Citrus Sinensis ID: 021609
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 310 | 2.2.26 [Sep-21-2011] | |||||||
| Q39963 | 309 | Probable pyridoxal biosyn | N/A | no | 0.996 | 1.0 | 0.941 | 1e-170 | |
| Q8L940 | 309 | Pyridoxal biosynthesis pr | yes | no | 0.996 | 1.0 | 0.909 | 1e-164 | |
| Q9FT25 | 312 | Pyridoxal biosynthesis pr | N/A | no | 0.993 | 0.987 | 0.912 | 1e-163 | |
| O80448 | 309 | Pyridoxal biosynthesis pr | no | no | 0.993 | 0.996 | 0.887 | 1e-157 | |
| Q69LA6 | 318 | Probable pyridoxal biosyn | yes | no | 0.993 | 0.968 | 0.847 | 1e-154 | |
| Q9AT63 | 309 | Probable pyridoxal biosyn | N/A | no | 0.996 | 1.0 | 0.848 | 1e-152 | |
| Q8W3D0 | 313 | Probable pyridoxal biosyn | no | no | 0.990 | 0.980 | 0.835 | 1e-149 | |
| B8G663 | 293 | Pyridoxal biosynthesis ly | yes | no | 0.932 | 0.986 | 0.754 | 1e-131 | |
| B9LIK3 | 293 | Pyridoxal biosynthesis ly | yes | no | 0.932 | 0.986 | 0.754 | 1e-131 | |
| A9WFT9 | 293 | Pyridoxal biosynthesis ly | yes | no | 0.932 | 0.986 | 0.754 | 1e-131 |
| >sp|Q39963|PDX1_HEVBR Probable pyridoxal biosynthesis protein PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 596 bits (1537), Expect = e-170, Method: Compositional matrix adjust.
Identities = 292/310 (94%), Positives = 305/310 (98%), Gaps = 1/310 (0%)
Query: 1 MAGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM 60
MAGTGVVAVYGN GAITETKKSPFSVKVGLAQMLRGGVIMDVV PEQAR+AEEAGACAVM
Sbjct: 1 MAGTGVVAVYGN-GAITETKKSPFSVKVGLAQMLRGGVIMDVVNPEQARIAEEAGACAVM 59
Query: 61 ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120
ALERVPADIR+QGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE
Sbjct: 60 ALERVPADIRAQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 119
Query: 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180
SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN+IEAVRH
Sbjct: 120 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRH 179
Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
VRSVMGDIR+LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVMGDIRLLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239
Query: 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300
MMQLGCDGVFVGSGVFKSGDP +RA+AIV+AVTHYSDP++LAEVSCGLGEAMVG+NL+D
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYSDPDMLAEVSCGLGEAMVGINLNDK 299
Query: 301 KVERFASRSE 310
KVERFA+RSE
Sbjct: 300 KVERFANRSE 309
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Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers. Hevea brasiliensis (taxid: 3981) |
| >sp|Q8L940|PDX13_ARATH Pyridoxal biosynthesis protein PDX1.3 OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 576 bits (1485), Expect = e-164, Method: Compositional matrix adjust.
Identities = 282/310 (90%), Positives = 299/310 (96%), Gaps = 1/310 (0%)
Query: 1 MAGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM 60
M GTGVVAVYGN GAITE KKSPFSVKVGLAQMLRGGVIMDVV EQAR+AEEAGACAVM
Sbjct: 1 MEGTGVVAVYGN-GAITEAKKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVM 59
Query: 61 ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120
ALERVPADIR+QGGVARMSDPQ+IKEIKQ+VTIPVMAKARIGHFVEAQILEAIGIDY+DE
Sbjct: 60 ALERVPADIRAQGGVARMSDPQMIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDE 119
Query: 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180
SEVLT ADE++HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH
Sbjct: 120 SEVLTLADEDHHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 179
Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
VRSV GDIRVLRNMDDDEVFTFAKK+AAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239
Query: 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300
MMQLGCDGVFVGSG+FKSGDP +RA+AIV+AVTHYSDPE+L EVSCGLGEAMVG+NL+D
Sbjct: 240 MMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLNDE 299
Query: 301 KVERFASRSE 310
KVERFA+RSE
Sbjct: 300 KVERFANRSE 309
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Involved in the production of pyridoxal (vitamin B6). Also plays an indirect role in osmotic or salt tolerance, and in resistance to singlet oxygen-generating photosensitizers. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FT25|PDX1_PHAVU Pyridoxal biosynthesis protein PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 575 bits (1482), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/308 (91%), Positives = 296/308 (96%)
Query: 3 GTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMAL 62
G+ VVA+Y +GAITETKKSPFSVKVGLAQMLRGGVIMDVV +QAR+AEEAGACAVMAL
Sbjct: 5 GSRVVALYDGNGAITETKKSPFSVKVGLAQMLRGGVIMDVVNADQARIAEEAGACAVMAL 64
Query: 63 ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122
ERVPADIR+QGGVARMSDPQLIKEIK++VTIPVMAKARIGHFVEAQILEAIGIDYVDESE
Sbjct: 65 ERVPADIRAQGGVARMSDPQLIKEIKRAVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 124
Query: 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR 182
VLT AD+ NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR
Sbjct: 125 VLTLADDANHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR 184
Query: 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242
SVM DIRVLRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA+MM
Sbjct: 185 SVMSDIRVLRNMDDDEVFTFAKSIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALMM 244
Query: 243 QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV 302
QLGCDGVFVGSGVFKSGDP KRA+AIV+AVTHYSDPE+LAEVSCGLGEAMVG+NLSD V
Sbjct: 245 QLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGINLSDTNV 304
Query: 303 ERFASRSE 310
ERFA+RSE
Sbjct: 305 ERFANRSE 312
|
Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers. Phaseolus vulgaris (taxid: 3885) |
| >sp|O80448|PDX11_ARATH Pyridoxal biosynthesis protein PDX1.1 OS=Arabidopsis thaliana GN=PDX11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 553 bits (1425), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/311 (88%), Positives = 297/311 (95%), Gaps = 3/311 (0%)
Query: 1 MAGTGVVAVYGNDGAITETK-KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAV 59
MAGTGVVAVYG +GA+TETK KSPFSVKVGLAQMLRGGVIMDVV EQAR+AEEAGACAV
Sbjct: 1 MAGTGVVAVYG-EGAMTETKQKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAV 59
Query: 60 MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119
MALERVPADIR+QGGVARMSDP++IKEIK +VTIPVMAKARIGHFVEAQILEAIG+DYVD
Sbjct: 60 MALERVPADIRAQGGVARMSDPEMIKEIKNAVTIPVMAKARIGHFVEAQILEAIGVDYVD 119
Query: 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVR 179
ESEVLT ADE+NHINKHNF+IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN++EAVR
Sbjct: 120 ESEVLTLADEDNHINKHNFKIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVVEAVR 179
Query: 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239
HVRSV G IR+LR+MDDDEVFT+AKKIAAPYDLV+QTK+LGRLPVV FAAGGVATPADAA
Sbjct: 180 HVRSVNGAIRLLRSMDDDEVFTYAKKIAAPYDLVVQTKELGRLPVVQFAAGGVATPADAA 239
Query: 240 MMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 299
+MMQLGCDGVFVGSGVFKSGDPVKRA+AIV+AVT+Y D VLAEVSCGLGEAMVGLNL D
Sbjct: 240 LMMQLGCDGVFVGSGVFKSGDPVKRAKAIVQAVTNYRDAAVLAEVSCGLGEAMVGLNLDD 299
Query: 300 HKVERFASRSE 310
KVERFASRSE
Sbjct: 300 -KVERFASRSE 309
|
Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q69LA6|PDX11_ORYSJ Probable pyridoxal biosynthesis protein PDX1.1 OS=Oryza sativa subsp. japonica GN=PDX11 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 543 bits (1398), Expect = e-154, Method: Compositional matrix adjust.
Identities = 266/314 (84%), Positives = 293/314 (93%), Gaps = 6/314 (1%)
Query: 3 GTGVVAVYG---NDGAITET---KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGA 56
GTGVV VYG N A+ E K + FSVKVGLAQMLRGGVIMDVVTPEQAR+AEEAGA
Sbjct: 5 GTGVVTVYGSGTNGAALLEPSNHKSATFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGA 64
Query: 57 CAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGID 116
CAVMALERVPADIR+QGGVARMSDP LI++IK++VTIPVMAKARIGHFVEAQILEAIG+D
Sbjct: 65 CAVMALERVPADIRAQGGVARMSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVD 124
Query: 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIE 176
YVDESEVLT AD+ +HINKHNFR+PFVCGCR+LGEALRRIREGAAMIRTKGEAGTGN++E
Sbjct: 125 YVDESEVLTLADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVE 184
Query: 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA 236
AVRHVRSVMGDIR LRNMDDDEVF++AK+IAAPYDLVMQTKQLGRLPVV FAAGGVATPA
Sbjct: 185 AVRHVRSVMGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPA 244
Query: 237 DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLN 296
DAA+MMQLGCDGVFVGSG+FKSGDP +RA+AIV+AVTHYSDP++LAEVS GLGEAMVG+N
Sbjct: 245 DAALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPKILAEVSSGLGEAMVGIN 304
Query: 297 LSDHKVERFASRSE 310
LSD KVERFA+RSE
Sbjct: 305 LSDPKVERFAARSE 318
|
Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9AT63|PDX1_GINBI Probable pyridoxal biosynthesis protein PDX1 OS=Ginkgo biloba GN=PDX1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 538 bits (1386), Expect = e-152, Method: Compositional matrix adjust.
Identities = 263/310 (84%), Positives = 288/310 (92%), Gaps = 1/310 (0%)
Query: 1 MAGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM 60
MA GVV VYG DGAIT+TK S ++VKVGLAQMLRGGVIMDVV EQAR+AEEAGA AVM
Sbjct: 1 MASDGVVTVYG-DGAITDTKVSSYAVKVGLAQMLRGGVIMDVVNAEQARIAEEAGATAVM 59
Query: 61 ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120
ALERVPADIR+QGGVARMSDP LIKEIK +VTIPVMAKARIGHFVEAQILEAIGIDY+DE
Sbjct: 60 ALERVPADIRAQGGVARMSDPGLIKEIKSAVTIPVMAKARIGHFVEAQILEAIGIDYIDE 119
Query: 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180
SEVLTPAD+ +HINKHNFRIPFVCGCRNLGEALRRI EGAAMIRTKGEAGTGN+IEAVRH
Sbjct: 120 SEVLTPADDXHHINKHNFRIPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGNVIEAVRH 179
Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
VRSV+GDIR L+++DDDEVF FAK+IAAPY+LV QTKQLGRLPVV+FAAGGVATPADAA+
Sbjct: 180 VRSVLGDIRKLQSLDDDEVFAFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAAL 239
Query: 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300
MMQLGCDGVFVGSGVFKSGDP +RA+AIV+AVTHY+DP +LAEVSC LGEAMVG+NL D
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDPHILAEVSCSLGEAMVGINLKDE 299
Query: 301 KVERFASRSE 310
KVER+A RSE
Sbjct: 300 KVERYAERSE 309
|
Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers. Ginkgo biloba (taxid: 3311) |
| >sp|Q8W3D0|PDX12_ORYSJ Probable pyridoxal biosynthesis protein PDX1.2 OS=Oryza sativa subsp. japonica GN=PDX12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 527 bits (1357), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/310 (83%), Positives = 288/310 (92%), Gaps = 3/310 (0%)
Query: 3 GTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMAL 62
GT VVA+YG ++ K FSVKVGLAQMLRGGVIMDVVTPEQAR+AEEAGACAVMAL
Sbjct: 5 GTDVVALYGGANGLSH-KSGSFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMAL 63
Query: 63 ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122
ERVPADIR+QGGVARMSDP LI++IK+SVTIPVMAKARIGH VEAQILEAIG+DYVDESE
Sbjct: 64 ERVPADIRAQGGVARMSDPGLIRDIKRSVTIPVMAKARIGHLVEAQILEAIGVDYVDESE 123
Query: 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR 182
VLT AD+ +HINK+NFR+PFVCGCR+LGEALRRIREGAAMIRTKGEAGTGN++EAVRHVR
Sbjct: 124 VLTLADDAHHINKNNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVR 183
Query: 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242
SVMGDIR LR+MDDDEVF++AK+IAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+MM
Sbjct: 184 SVMGDIRALRSMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMM 243
Query: 243 QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK- 301
QLGCDGVFVGSG+FKSGDP RA+AIV+AVTHYSDP++LAEVS GLGEAMVG+NLSD K
Sbjct: 244 QLGCDGVFVGSGIFKSGDPALRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSDPKI 303
Query: 302 -VERFASRSE 310
VERFA+RS+
Sbjct: 304 HVERFAARSD 313
|
Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|B8G663|PDXS_CHLAD Pyridoxal biosynthesis lyase PdxS OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pdxS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1202), Expect = e-131, Method: Compositional matrix adjust.
Identities = 218/289 (75%), Positives = 261/289 (90%)
Query: 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMS 79
+KS ++ KVGLAQML+GGVIMDVVTPEQAR+AEEAGA AVMALERVPADIR+QGGVARMS
Sbjct: 2 EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMS 61
Query: 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFR 139
DP+LI IKQ+VTIPVMAKARIGHFVEAQ+LEAIG+DY+DESEVLTPADEE+HINKH FR
Sbjct: 62 DPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFR 121
Query: 140 IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199
+PFVCGCRNLGEALRRI EGAAM+RTKGEAGTGN++EAVRH R+V +IR L++M++DE+
Sbjct: 122 VPFVCGCRNLGEALRRIAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDEL 181
Query: 200 FTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
FT+AK+I APY+LV Q G+LPVV+FAAGG+ATPADAA++MQLG DG+FVGSG+FKSG
Sbjct: 182 FTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSG 241
Query: 260 DPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 308
+P+KRA+AIV A THY+DPE++AEVS GLGEAMVG+N+ E+ +R
Sbjct: 242 NPIKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPAEQLMAR 290
|
Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring. Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427) EC: 4 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|B9LIK3|PDXS_CHLSY Pyridoxal biosynthesis lyase PdxS OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pdxS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1202), Expect = e-131, Method: Compositional matrix adjust.
Identities = 218/289 (75%), Positives = 261/289 (90%)
Query: 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMS 79
+KS ++ KVGLAQML+GGVIMDVVTPEQAR+AEEAGA AVMALERVPADIR+QGGVARMS
Sbjct: 2 EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMS 61
Query: 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFR 139
DP+LI IKQ+VTIPVMAKARIGHFVEAQ+LEAIG+DY+DESEVLTPADEE+HINKH FR
Sbjct: 62 DPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFR 121
Query: 140 IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199
+PFVCGCRNLGEALRR+ EGAAM+RTKGEAGTGN++EAVRH R+V +IR L++M++DE+
Sbjct: 122 VPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDEL 181
Query: 200 FTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
FT+AK+I APY+LV Q G+LPVV+FAAGG+ATPADAA++MQLG DG+FVGSG+FKSG
Sbjct: 182 FTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSG 241
Query: 260 DPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 308
DPVKRA+AIV A THY+DPE++AEVS GLGEAMVG+N+ ++ +R
Sbjct: 242 DPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMAR 290
|
Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring. Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) (taxid: 480224) EC: 4 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|A9WFT9|PDXS_CHLAA Pyridoxal biosynthesis lyase PdxS OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pdxS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1202), Expect = e-131, Method: Compositional matrix adjust.
Identities = 218/289 (75%), Positives = 261/289 (90%)
Query: 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMS 79
+KS ++ KVGLAQML+GGVIMDVVTPEQAR+AEEAGA AVMALERVPADIR+QGGVARMS
Sbjct: 2 EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMS 61
Query: 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFR 139
DP+LI IKQ+VTIPVMAKARIGHFVEAQ+LEAIG+DY+DESEVLTPADEE+HINKH FR
Sbjct: 62 DPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFR 121
Query: 140 IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199
+PFVCGCRNLGEALRR+ EGAAM+RTKGEAGTGN++EAVRH R+V +IR L++M++DE+
Sbjct: 122 VPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDEL 181
Query: 200 FTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
FT+AK+I APY+LV Q G+LPVV+FAAGG+ATPADAA++MQLG DG+FVGSG+FKSG
Sbjct: 182 FTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSG 241
Query: 260 DPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 308
DPVKRA+AIV A THY+DPE++AEVS GLGEAMVG+N+ ++ +R
Sbjct: 242 DPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMAR 290
|
Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring. Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602) EC: 4 EC: . EC: - EC: . EC: - EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 310 | ||||||
| 224139104 | 309 | predicted protein [Populus trichocarpa] | 0.996 | 1.0 | 0.948 | 1e-169 | |
| 2501578 | 309 | RecName: Full=Probable pyridoxal biosynt | 0.996 | 1.0 | 0.941 | 1e-168 | |
| 224087752 | 309 | predicted protein [Populus trichocarpa] | 0.996 | 1.0 | 0.935 | 1e-166 | |
| 72256517 | 310 | pyridoxine biosynthesis protein [Lotus j | 1.0 | 1.0 | 0.912 | 1e-164 | |
| 225434584 | 309 | PREDICTED: probable pyridoxal biosynthes | 0.996 | 1.0 | 0.912 | 1e-163 | |
| 449439894 | 308 | PREDICTED: probable pyridoxal biosynthes | 0.993 | 1.0 | 0.929 | 1e-163 | |
| 356549200 | 311 | PREDICTED: pyridoxal biosynthesis protei | 0.993 | 0.990 | 0.922 | 1e-163 | |
| 351723277 | 311 | pyridoxine biosynthesis protein [Glycine | 0.993 | 0.990 | 0.915 | 1e-162 | |
| 15240972 | 309 | Pyridoxal biosynthesis protein PDX1.3 [A | 0.996 | 1.0 | 0.909 | 1e-162 | |
| 45477167 | 312 | RecName: Full=Pyridoxal biosynthesis pro | 0.993 | 0.987 | 0.912 | 1e-162 |
| >gi|224139104|ref|XP_002322981.1| predicted protein [Populus trichocarpa] gi|222867611|gb|EEF04742.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/310 (94%), Positives = 306/310 (98%), Gaps = 1/310 (0%)
Query: 1 MAGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM 60
MAGTGVVAVYGN GAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQAR+AEEAGACAVM
Sbjct: 1 MAGTGVVAVYGN-GAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 59
Query: 61 ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120
ALERVPADIR+QGGVARMSDPQLIKEIKQ+VTIPVMAKARIGHFVEAQILEAIGIDY+DE
Sbjct: 60 ALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDE 119
Query: 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180
SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN+IEAVRH
Sbjct: 120 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRH 179
Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239
Query: 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300
MMQLGCDGVFVGSGVFKSGDPVKR +AIV+AVTHYSDP+VLAEVSCGLGEAMVGLNL+D
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPVKRGRAIVQAVTHYSDPQVLAEVSCGLGEAMVGLNLNDK 299
Query: 301 KVERFASRSE 310
K+ERFASRS+
Sbjct: 300 KIERFASRSD 309
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2501578|sp|Q39963.1|PDX1_HEVBR RecName: Full=Probable pyridoxal biosynthesis protein PDX1; AltName: Full=Ethylene-inducible protein HEVER gi|1209317|gb|AAA91063.1| ethylene-inducible protein [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 292/310 (94%), Positives = 305/310 (98%), Gaps = 1/310 (0%)
Query: 1 MAGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM 60
MAGTGVVAVYGN GAITETKKSPFSVKVGLAQMLRGGVIMDVV PEQAR+AEEAGACAVM
Sbjct: 1 MAGTGVVAVYGN-GAITETKKSPFSVKVGLAQMLRGGVIMDVVNPEQARIAEEAGACAVM 59
Query: 61 ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120
ALERVPADIR+QGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE
Sbjct: 60 ALERVPADIRAQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 119
Query: 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180
SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN+IEAVRH
Sbjct: 120 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRH 179
Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
VRSVMGDIR+LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVMGDIRLLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239
Query: 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300
MMQLGCDGVFVGSGVFKSGDP +RA+AIV+AVTHYSDP++LAEVSCGLGEAMVG+NL+D
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYSDPDMLAEVSCGLGEAMVGINLNDK 299
Query: 301 KVERFASRSE 310
KVERFA+RSE
Sbjct: 300 KVERFANRSE 309
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224087752|ref|XP_002308219.1| predicted protein [Populus trichocarpa] gi|222854195|gb|EEE91742.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 290/310 (93%), Positives = 303/310 (97%), Gaps = 1/310 (0%)
Query: 1 MAGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM 60
MAGTGVVAVYGN G ITETKKSPFSVKVGLAQMLRGGVIMDVVT EQAR+AEEAGACAVM
Sbjct: 1 MAGTGVVAVYGN-GTITETKKSPFSVKVGLAQMLRGGVIMDVVTAEQARIAEEAGACAVM 59
Query: 61 ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120
ALERVPADIR+QGGVARMSDPQLIKEIKQ+VTIPVMAKARIGHFVEAQILEAIG+DYVDE
Sbjct: 60 ALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGVDYVDE 119
Query: 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180
SEVLT ADE+NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN+IEAVRH
Sbjct: 120 SEVLTLADEDNHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRH 179
Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
VRSVMGDIR+LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVMGDIRMLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239
Query: 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300
MMQLGCDGVFVGSGVFKSGDPVKR +AIV+AVTHYSDPE+LAEVSCGLGEAMVGLNL+D
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPVKRGRAIVQAVTHYSDPELLAEVSCGLGEAMVGLNLNDK 299
Query: 301 KVERFASRSE 310
KVERFASRS+
Sbjct: 300 KVERFASRSD 309
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|72256517|gb|AAZ67141.1| pyridoxine biosynthesis protein [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 283/310 (91%), Positives = 299/310 (96%)
Query: 1 MAGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM 60
M G+GVV VYGN AITETKKSPFSVKVGLAQMLRGGVIMDVV +QAR+AEEAGACAVM
Sbjct: 1 MEGSGVVTVYGNGAAITETKKSPFSVKVGLAQMLRGGVIMDVVNAQQARIAEEAGACAVM 60
Query: 61 ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120
ALERVPADIR+QGGVARMSDPQLIKEIKQ+VTIPVMAKARIGHFVEAQILEAIG+DYVDE
Sbjct: 61 ALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
Query: 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180
SEVLT ADE+NHINKHNFRIPFVCGCRNLGEALRR+REGAAMIRTKGEAGTGNI+EAVRH
Sbjct: 121 SEVLTLADEDNHINKHNFRIPFVCGCRNLGEALRRVREGAAMIRTKGEAGTGNIVEAVRH 180
Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA+
Sbjct: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAL 240
Query: 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300
MMQLGCDGVFVGSGVFKSGDP KRA+AIV+AVTHYSDP +LAE+SCGLGEAMVGLNL+D
Sbjct: 241 MMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPGLLAEISCGLGEAMVGLNLNDS 300
Query: 301 KVERFASRSE 310
VERFA+RSE
Sbjct: 301 NVERFANRSE 310
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434584|ref|XP_002278391.1| PREDICTED: probable pyridoxal biosynthesis protein PDX1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 283/310 (91%), Positives = 302/310 (97%), Gaps = 1/310 (0%)
Query: 1 MAGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM 60
MAG+GVV VYGN GAITETKKSPFSVKVGLAQMLRGGVIMDVV EQAR+AEEAGACAVM
Sbjct: 1 MAGSGVVTVYGN-GAITETKKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVM 59
Query: 61 ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120
ALERVPADIR+QGGVARMSDP LIKEIKQ+VTIPVMAKARIGHFVEAQILEAIGIDYVDE
Sbjct: 60 ALERVPADIRAQGGVARMSDPSLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYVDE 119
Query: 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180
SEVLT ADE+NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNI+EAVRH
Sbjct: 120 SEVLTVADEDNHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIVEAVRH 179
Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
VRSVMG+IRVLRNMDDDEVFT+AKK++APYDLVMQTKQLGRLPVVHFAAGGVATPADAA+
Sbjct: 180 VRSVMGEIRVLRNMDDDEVFTYAKKLSAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAL 239
Query: 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300
MMQLGCDGVFVGSGVFKSGDP +RA+AIV+AVTHYSDP+VLAEVSCGLGEAMVG+NL+D
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYSDPDVLAEVSCGLGEAMVGINLNDD 299
Query: 301 KVERFASRSE 310
KVER+A+RSE
Sbjct: 300 KVERYANRSE 309
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439894|ref|XP_004137720.1| PREDICTED: probable pyridoxal biosynthesis protein PDX1-like [Cucumis sativus] gi|449523121|ref|XP_004168573.1| PREDICTED: probable pyridoxal biosynthesis protein PDX1-like [Cucumis sativus] gi|307135934|gb|ADN33796.1| pyridoxal biosynthesis protein [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 288/310 (92%), Positives = 303/310 (97%), Gaps = 2/310 (0%)
Query: 1 MAGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM 60
MAG+GVVAVYGN GA+TETK+SPFSVKVGLAQMLRGGVIMDVV EQARVAEEAGACAVM
Sbjct: 1 MAGSGVVAVYGN-GALTETKQSPFSVKVGLAQMLRGGVIMDVVNAEQARVAEEAGACAVM 59
Query: 61 ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120
ALERVPADIR+QGGVARMSDPQLIKEIKQ+VTIPVMAKARIGHFVEAQILEAIGIDYVDE
Sbjct: 60 ALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYVDE 119
Query: 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180
SEVLT ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH
Sbjct: 120 SEVLTLADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 179
Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
VRSVMGDIR+LRNMDDDEVFTFAKKIAAPYDLV+QTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVMGDIRLLRNMDDDEVFTFAKKIAAPYDLVLQTKQLGRLPVVQFAAGGVATPADAAL 239
Query: 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300
MMQLGCDGVFVGSGVFKSGDP +RA+AIV+AVTHY+DPEVLAEVSCGLGEAMVGLNL++
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDPEVLAEVSCGLGEAMVGLNLNE- 298
Query: 301 KVERFASRSE 310
KVERFA+RSE
Sbjct: 299 KVERFANRSE 308
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549200|ref|XP_003542985.1| PREDICTED: pyridoxal biosynthesis protein PDX1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 285/309 (92%), Positives = 299/309 (96%), Gaps = 1/309 (0%)
Query: 2 AGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMA 61
+G+GVV VYGN GAITETKKSPFSVKVGLAQMLRGGVIMDVV EQAR+AEEAGACAVMA
Sbjct: 4 SGSGVVTVYGN-GAITETKKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMA 62
Query: 62 LERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDES 121
LERVPADIR+QGGVARMSDPQLIK+IK++VTIPVMAKARIGHFVEAQILEAIGIDYVDES
Sbjct: 63 LERVPADIRAQGGVARMSDPQLIKDIKRAVTIPVMAKARIGHFVEAQILEAIGIDYVDES 122
Query: 122 EVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181
EVLT AD+ NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV
Sbjct: 123 EVLTLADDANHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 182
Query: 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM 241
RSVM DIRVLRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA+M
Sbjct: 183 RSVMSDIRVLRNMDDDEVFTFAKSIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALM 242
Query: 242 MQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK 301
MQLGCDGVFVGSGVFKSGDP KRA+AIV+AVTHYSDPEVLAEVSCGLGEAMVG+NL+D K
Sbjct: 243 MQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEVLAEVSCGLGEAMVGINLTDDK 302
Query: 302 VERFASRSE 310
VERFA+RSE
Sbjct: 303 VERFANRSE 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351723277|ref|NP_001238041.1| pyridoxine biosynthesis protein [Glycine max] gi|72256519|gb|AAZ67142.1| pyridoxine biosynthesis protein [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1487), Expect = e-162, Method: Compositional matrix adjust.
Identities = 283/309 (91%), Positives = 298/309 (96%), Gaps = 1/309 (0%)
Query: 2 AGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMA 61
+G+GVV VYGN GAITETKKSPFSVKVGLAQMLRGGVIMDVV EQAR+AEEAGACAVMA
Sbjct: 4 SGSGVVTVYGN-GAITETKKSPFSVKVGLAQMLRGGVIMDVVDAEQARIAEEAGACAVMA 62
Query: 62 LERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDES 121
LERVPADIR+QGGVARMSDPQLI +IK++VTIPVMAKARIGHFVEAQILEAIGIDYVDES
Sbjct: 63 LERVPADIRAQGGVARMSDPQLINDIKRAVTIPVMAKARIGHFVEAQILEAIGIDYVDES 122
Query: 122 EVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181
EVLT AD+ NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV
Sbjct: 123 EVLTLADDANHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 182
Query: 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM 241
RSVM DIRVLRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA+M
Sbjct: 183 RSVMSDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALM 242
Query: 242 MQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK 301
MQLGCDGVFVGSGVFKSGDP KRA+AIV+AVTHYSDPE+LAEVSCGLGEAMVG+NL+D K
Sbjct: 243 MQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGINLTDDK 302
Query: 302 VERFASRSE 310
VERFA+RSE
Sbjct: 303 VERFANRSE 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240972|ref|NP_195761.1| Pyridoxal biosynthesis protein PDX1.3 [Arabidopsis thaliana] gi|297806077|ref|XP_002870922.1| hypothetical protein ARALYDRAFT_908014 [Arabidopsis lyrata subsp. lyrata] gi|45477193|sp|Q8L940.2|PDX13_ARATH RecName: Full=Pyridoxal biosynthesis protein PDX1.3; Short=AtPDX1.3; Short=AtPDX1;1 gi|16226309|gb|AAL16130.1|AF428298_1 AT5g01410/T10O8_120 [Arabidopsis thaliana] gi|17933287|gb|AAL48227.1|AF446352_1 AT5g01410/T10O8_120 [Arabidopsis thaliana] gi|7320719|emb|CAB81924.1| pyridoxine biosynthesis protein-like [Arabidopsis thaliana] gi|20453411|gb|AAM19944.1| AT5g01410/T10O8_120 [Arabidopsis thaliana] gi|65329268|gb|AAY42123.1| pyridoxine biosynthesis protein [Arabidopsis thaliana] gi|110742648|dbj|BAE99236.1| pyridoxine biosynthesis protein - like [Arabidopsis thaliana] gi|297316759|gb|EFH47181.1| hypothetical protein ARALYDRAFT_908014 [Arabidopsis lyrata subsp. lyrata] gi|332002957|gb|AED90340.1| Pyridoxal biosynthesis protein PDX1.3 [Arabidopsis thaliana] gi|333108791|gb|AEF15886.1| pyridoxine biosynthesis protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 282/310 (90%), Positives = 299/310 (96%), Gaps = 1/310 (0%)
Query: 1 MAGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM 60
M GTGVVAVYGN GAITE KKSPFSVKVGLAQMLRGGVIMDVV EQAR+AEEAGACAVM
Sbjct: 1 MEGTGVVAVYGN-GAITEAKKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVM 59
Query: 61 ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120
ALERVPADIR+QGGVARMSDPQ+IKEIKQ+VTIPVMAKARIGHFVEAQILEAIGIDY+DE
Sbjct: 60 ALERVPADIRAQGGVARMSDPQMIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDE 119
Query: 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180
SEVLT ADE++HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH
Sbjct: 120 SEVLTLADEDHHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 179
Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
VRSV GDIRVLRNMDDDEVFTFAKK+AAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239
Query: 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300
MMQLGCDGVFVGSG+FKSGDP +RA+AIV+AVTHYSDPE+L EVSCGLGEAMVG+NL+D
Sbjct: 240 MMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLNDE 299
Query: 301 KVERFASRSE 310
KVERFA+RSE
Sbjct: 300 KVERFANRSE 309
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|45477167|sp|Q9FT25.1|PDX1_PHAVU RecName: Full=Pyridoxal biosynthesis protein PDX1; AltName: Full=pvPDX1 gi|10719739|gb|AAG17942.1| putative pyridoxine biosynthetic enzyme [Phaseolus vulgaris] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust.
Identities = 281/308 (91%), Positives = 296/308 (96%)
Query: 3 GTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMAL 62
G+ VVA+Y +GAITETKKSPFSVKVGLAQMLRGGVIMDVV +QAR+AEEAGACAVMAL
Sbjct: 5 GSRVVALYDGNGAITETKKSPFSVKVGLAQMLRGGVIMDVVNADQARIAEEAGACAVMAL 64
Query: 63 ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122
ERVPADIR+QGGVARMSDPQLIKEIK++VTIPVMAKARIGHFVEAQILEAIGIDYVDESE
Sbjct: 65 ERVPADIRAQGGVARMSDPQLIKEIKRAVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 124
Query: 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR 182
VLT AD+ NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR
Sbjct: 125 VLTLADDANHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR 184
Query: 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242
SVM DIRVLRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA+MM
Sbjct: 185 SVMSDIRVLRNMDDDEVFTFAKSIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALMM 244
Query: 243 QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV 302
QLGCDGVFVGSGVFKSGDP KRA+AIV+AVTHYSDPE+LAEVSCGLGEAMVG+NLSD V
Sbjct: 245 QLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGINLSDTNV 304
Query: 303 ERFASRSE 310
ERFA+RSE
Sbjct: 305 ERFANRSE 312
|
Source: Phaseolus vulgaris Species: Phaseolus vulgaris Genus: Phaseolus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 310 | ||||||
| TAIR|locus:2179142 | 309 | RSR4 "REDUCED SUGAR RESPONSE 4 | 0.996 | 1.0 | 0.835 | 3.8e-133 | |
| TAIR|locus:2042932 | 309 | PDX1.1 "pyridoxine biosynthesi | 0.993 | 0.996 | 0.810 | 2.6e-127 | |
| POMBASE|SPAC29B12.04 | 296 | snz1 "pyridoxine biosynthesis | 0.929 | 0.972 | 0.657 | 4.1e-97 | |
| DICTYBASE|DDB_G0288299 | 305 | pdx1 "vitamin B6 biosynthesis | 0.903 | 0.918 | 0.657 | 9.7e-96 | |
| ASPGD|ASPL0000069714 | 304 | pyroA [Emericella nidulans (ta | 0.948 | 0.967 | 0.631 | 3.8e-94 | |
| TIGR_CMR|CHY_2703 | 294 | CHY_2703 "pyridoxine biosynthe | 0.932 | 0.982 | 0.637 | 7.8e-94 | |
| UNIPROTKB|Q3Z9H3 | 293 | pdxS "Pyridoxal biosynthesis l | 0.919 | 0.972 | 0.621 | 1.1e-92 | |
| TIGR_CMR|DET_0380 | 293 | DET_0380 "pyridoxine biosynthe | 0.919 | 0.972 | 0.621 | 1.1e-92 | |
| TAIR|locus:2093427 | 314 | PDX1.2 "pyridoxine biosynthesi | 0.967 | 0.955 | 0.576 | 1.9e-90 | |
| UNIPROTKB|G4N4K3 | 319 | MGG_05980 "Pyridoxine biosynth | 0.958 | 0.931 | 0.596 | 6e-87 |
| TAIR|locus:2179142 RSR4 "REDUCED SUGAR RESPONSE 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1305 (464.4 bits), Expect = 3.8e-133, P = 3.8e-133
Identities = 259/310 (83%), Positives = 275/310 (88%)
Query: 1 MAGTGVVAVYGNDGAITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM 60
M GTGVVAVYGN GAITE KKSPFSVKVGLAQMLRGGVIMDVV EQAR+AEEAGACAVM
Sbjct: 1 MEGTGVVAVYGN-GAITEAKKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVM 59
Query: 61 ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120
ALERVPADIR+QGGVARMSDPQ+IKEIKQ+VTIPVMAKARIGHFVEAQILEAIGIDY+DE
Sbjct: 60 ALERVPADIRAQGGVARMSDPQMIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDE 119
Query: 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180
SEVLT ADE++HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH
Sbjct: 120 SEVLTLADEDHHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 179
Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXM 240
VRSV GDIRVLRNMDDDEVFTFAKK+AAPYDLVMQTKQLGRLPVV F +
Sbjct: 180 VRSVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239
Query: 241 MMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300
MMQLGCD DP +RA+AIV+AVTHYSDPE+L EVSCGLGEAMVG+NL+D
Sbjct: 240 MMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLNDE 299
Query: 301 KVERFASRSE 310
KVERFA+RSE
Sbjct: 300 KVERFANRSE 309
|
|
| TAIR|locus:2042932 PDX1.1 "pyridoxine biosynthesis 1.1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
Identities = 252/311 (81%), Positives = 273/311 (87%)
Query: 1 MAGTGVVAVYGNDGAITETK-KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAV 59
MAGTGVVAVYG +GA+TETK KSPFSVKVGLAQMLRGGVIMDVV EQAR+AEEAGACAV
Sbjct: 1 MAGTGVVAVYG-EGAMTETKQKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAV 59
Query: 60 MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119
MALERVPADIR+QGGVARMSDP++IKEIK +VTIPVMAKARIGHFVEAQILEAIG+DYVD
Sbjct: 60 MALERVPADIRAQGGVARMSDPEMIKEIKNAVTIPVMAKARIGHFVEAQILEAIGVDYVD 119
Query: 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVR 179
ESEVLT ADE+NHINKHNF+IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN++EAVR
Sbjct: 120 ESEVLTLADEDNHINKHNFKIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVVEAVR 179
Query: 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXX 239
HVRSV G IR+LR+MDDDEVFT+AKKIAAPYDLV+QTK+LGRLPVV F
Sbjct: 180 HVRSVNGAIRLLRSMDDDEVFTYAKKIAAPYDLVVQTKELGRLPVVQFAAGGVATPADAA 239
Query: 240 MMMQLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 299
+MMQLGCD DPVKRA+AIV+AVT+Y D VLAEVSCGLGEAMVGLNL D
Sbjct: 240 LMMQLGCDGVFVGSGVFKSGDPVKRAKAIVQAVTNYRDAAVLAEVSCGLGEAMVGLNLDD 299
Query: 300 HKVERFASRSE 310
KVERFASRSE
Sbjct: 300 -KVERFASRSE 309
|
|
| POMBASE|SPAC29B12.04 snz1 "pyridoxine biosynthesis protein" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
Identities = 190/289 (65%), Positives = 227/289 (78%)
Query: 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSD 80
K VK GLAQML+GGVIMDVV EQAR+AE AGACAVMALERVPADIR+QGGVARMSD
Sbjct: 6 KGSTQVKAGLAQMLKGGVIMDVVNAEQARIAEAAGACAVMALERVPADIRAQGGVARMSD 65
Query: 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRI 140
P +IKEI+ +V+IPVMAK RIGHFVEAQILE+IG+DY+DESEVLTPAD+ NHI K F +
Sbjct: 66 PSMIKEIQAAVSIPVMAKVRIGHFVEAQILESIGVDYIDESEVLTPADDINHIEKSKFTV 125
Query: 141 PFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF 200
PFVCG RNLGEALRRI EGAAMIRTKGEAGTG+++EAVRH R + G++R +++M DE++
Sbjct: 126 PFVCGSRNLGEALRRISEGAAMIRTKGEAGTGDVVEAVRHTRQMQGELRRVKSMSPDELY 185
Query: 201 TFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXD 260
T+AK+IAAP DLV + QLGRLPVV+F +MMQLGCD D
Sbjct: 186 TYAKEIAAPIDLVKECAQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFLSGD 245
Query: 261 PVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 308
P KRA+AIVRAVTHY+DP++LAEVS LG AMVG ++S + E+ A+R
Sbjct: 246 PAKRARAIVRAVTHYNDPKILAEVSENLGAAMVGRSVSSLEEKEKLATR 294
|
|
| DICTYBASE|DDB_G0288299 pdx1 "vitamin B6 biosynthesis protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
Identities = 184/280 (65%), Positives = 224/280 (80%)
Query: 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDP 81
SPF +K LAQML+GGVIMDVVTPEQAR+AEEAGACAVMALE++PADIR GGVARMSDP
Sbjct: 14 SPFRIKSSLAQMLKGGVIMDVVTPEQARIAEEAGACAVMALEKIPADIRHFGGVARMSDP 73
Query: 82 QLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIP 141
+IKEI +VTIPVMAK RIGHFVEAQIL+ IG+DY+DESEVLT AD ENHI+K F++P
Sbjct: 74 GMIKEIMNAVTIPVMAKVRIGHFVEAQILQEIGVDYIDESEVLTIADNENHIDKSEFKVP 133
Query: 142 FVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201
FVCGCRNLGEALRRI EGAAMIRTKGEAGTG+++EAVRH R+V +I+ ++NMD E++T
Sbjct: 134 FVCGCRNLGEALRRISEGAAMIRTKGEAGTGDVVEAVRHARAVNKEIKKIQNMDPHELYT 193
Query: 202 FAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDP 261
+AK+I AP +LV + K+LGRLPVV+F MMMQLG D DP
Sbjct: 194 YAKEIQAPLELVKEVKRLGRLPVVNFAAGGVATPADAAMMMQLGMDGVFVGSGIFKSGDP 253
Query: 262 VKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK 301
KRA+AIV+AVTH+++P+++A+VS LGEAMVG+N+ K
Sbjct: 254 AKRAKAIVQAVTHFNNPQIVAKVSENLGEAMVGINVDTLK 293
|
|
| ASPGD|ASPL0000069714 pyroA [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 937 (334.9 bits), Expect = 3.8e-94, P = 3.8e-94
Identities = 190/301 (63%), Positives = 229/301 (76%)
Query: 15 AITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGG 74
A T + F+VK GLAQML+GGVIMDVV EQAR+AEEAGA AVMALERVPADIR+QGG
Sbjct: 2 AATNGASNDFTVKAGLAQMLKGGVIMDVVNAEQARIAEEAGAAAVMALERVPADIRAQGG 61
Query: 75 VARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHIN 134
VARMSDP +IKEI ++VTIPVMAKARIGHFVE QILEAIG+DY+DESEVLTPAD H+
Sbjct: 62 VARMSDPSMIKEIMEAVTIPVMAKARIGHFVECQILEAIGVDYIDESEVLTPADNLYHVT 121
Query: 135 KHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIR----V 190
KHNF+ PFVCGCRNLGEALRRI EGAAMIRTKGEAGTG+++EAV+H+R+V +I +
Sbjct: 122 KHNFKAPFVCGCRNLGEALRRISEGAAMIRTKGEAGTGDVVEAVKHMRTVNAEIARARAI 181
Query: 191 LRNMDDDE--VFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDX 248
L++ D E + +A+++ APY+L+ + + GRLPVV+F +MMQLGCD
Sbjct: 182 LQSSPDPEPELRAYARELEAPYELLREAAEKGRLPVVNFAAGGVATPADAALMMQLGCDG 241
Query: 249 XXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE-RFAS 307
D KRA+AIV+AVTHY DP+VLAEVS GLGEAMVG+N+S K E + A
Sbjct: 242 VFVGSGIFKSGDAKKRAKAIVQAVTHYKDPKVLAEVSQGLGEAMVGINVSHMKDEDKLAK 301
Query: 308 R 308
R
Sbjct: 302 R 302
|
|
| TIGR_CMR|CHY_2703 CHY_2703 "pyridoxine biosynthesis protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
Identities = 185/290 (63%), Positives = 223/290 (76%)
Query: 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMS 79
+K + VK GLA+ML+GGVIMDV TPEQA++AEEAGACAVMALERVPADIR+ GGVARM+
Sbjct: 3 EKGTWVVKKGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARMA 62
Query: 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFR 139
DP +I I +VTIPVMAK RIGHFVEAQILEA+G+DY+DESEVLTPADE HI+KH F+
Sbjct: 63 DPNVILRIMDAVTIPVMAKVRIGHFVEAQILEALGVDYIDESEVLTPADELFHIDKHAFK 122
Query: 140 IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199
+PFVCG RNLGEALRRI EGAAMIRTKGE GTGN++EAVRH+R VMG+IR ++NM +E+
Sbjct: 123 VPFVCGARNLGEALRRIGEGAAMIRTKGEPGTGNVVEAVRHMRQVMGEIRRIQNMPREEL 182
Query: 200 FTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXX 259
T AK++ APYDLV+ + GRLPVV+F +MMQLG D
Sbjct: 183 MTAAKEMGAPYDLVLYVHEHGRLPVVNFAAGGIATPADAALMMQLGADGIFVGSGIFKSK 242
Query: 260 DPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 308
DPV RA+AIV A T+Y DP+VLAEVS GLGEAM G+++ + ER + R
Sbjct: 243 DPVGRAKAIVAATTYYDDPKVLAEVSKGLGEAMPGIDIKTISQTERMSER 292
|
|
| UNIPROTKB|Q3Z9H3 pdxS "Pyridoxal biosynthesis lyase PdxS" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 177/285 (62%), Positives = 224/285 (78%)
Query: 24 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQL 83
F VK GLAQML+GGVIMDV TPEQA++AEEAGACAVMALERVP+DIR+ GGVARM+DP +
Sbjct: 6 FKVKSGLAQMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPSDIRAAGGVARMADPTI 65
Query: 84 IKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFV 143
I++I + V+IPVMAK RIGHFVEAQILE++G+DY+DESEVLTPADE H+ KH+F++PFV
Sbjct: 66 IEKIMKVVSIPVMAKCRIGHFVEAQILESMGVDYIDESEVLTPADESFHVWKHDFKVPFV 125
Query: 144 CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203
CGCR+LGEALRRI EGAAMIRTKGEAGTGNI+EAVRH+RSVMG +R +++M DE+ +A
Sbjct: 126 CGCRDLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSADELSAYA 185
Query: 204 KKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVK 263
K+I AP +LV++ + G+LPVV+F +MMQLG D DP
Sbjct: 186 KEINAPLELVLELHKTGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSDPAA 245
Query: 264 RAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 308
A+A+V+AVTHY D +VLAE+S GLG+AM GL++ + ++ SR
Sbjct: 246 MAKAVVKAVTHYKDAKVLAEISKGLGDAMPGLDIKQIEPDKLISR 290
|
|
| TIGR_CMR|DET_0380 DET_0380 "pyridoxine biosynthesis protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 177/285 (62%), Positives = 224/285 (78%)
Query: 24 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQL 83
F VK GLAQML+GGVIMDV TPEQA++AEEAGACAVMALERVP+DIR+ GGVARM+DP +
Sbjct: 6 FKVKSGLAQMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPSDIRAAGGVARMADPTI 65
Query: 84 IKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFV 143
I++I + V+IPVMAK RIGHFVEAQILE++G+DY+DESEVLTPADE H+ KH+F++PFV
Sbjct: 66 IEKIMKVVSIPVMAKCRIGHFVEAQILESMGVDYIDESEVLTPADESFHVWKHDFKVPFV 125
Query: 144 CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203
CGCR+LGEALRRI EGAAMIRTKGEAGTGNI+EAVRH+RSVMG +R +++M DE+ +A
Sbjct: 126 CGCRDLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSADELSAYA 185
Query: 204 KKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVK 263
K+I AP +LV++ + G+LPVV+F +MMQLG D DP
Sbjct: 186 KEINAPLELVLELHKTGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSDPAA 245
Query: 264 RAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASR 308
A+A+V+AVTHY D +VLAE+S GLG+AM GL++ + ++ SR
Sbjct: 246 MAKAVVKAVTHYKDAKVLAEISKGLGDAMPGLDIKQIEPDKLISR 290
|
|
| TAIR|locus:2093427 PDX1.2 "pyridoxine biosynthesis 1.2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 902 (322.6 bits), Expect = 1.9e-90, P = 1.9e-90
Identities = 177/307 (57%), Positives = 231/307 (75%)
Query: 5 GVVAVYGNDGAITETKKS-PFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALE 63
G V +Y AIT+ KK+ PFSVKVGLAQ+LRGG I++V + QA++AE AGAC+V+ +
Sbjct: 12 GAVTLYSGT-AITDAKKNHPFSVKVGLAQVLRGGAIVEVSSVNQAKLAESAGACSVIVSD 70
Query: 64 RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEV 123
P +RS+GGV RM DP LIKE+K++V++PVMA+AR+GHFVEAQILE++ +DY+DESE+
Sbjct: 71 --P--VRSRGGVRRMPDPVLIKEVKRAVSVPVMARARVGHFVEAQILESLAVDYIDESEI 126
Query: 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHVR 182
++ AD+++ INKHNFR PF+CGCR+ GEALRRIREGAAMIR +G+ TGNI E V++VR
Sbjct: 127 ISVADDDHFINKHNFRSPFICGCRDTGEALRRIREGAAMIRIQGDLTATGNIAETVKNVR 186
Query: 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMM 242
S+MG++RVL NMDDDEVFTFAKKI+APYDLV QTKQ+GR+PVV F +MM
Sbjct: 187 SLMGEVRVLNNMDDDEVFTFAKKISAPYDLVAQTKQMGRVPVVQFASGGITTPADAALMM 246
Query: 243 QLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV 302
QLGCD DP K+ ++IV+AV HY+DP VLAE+S GL AM LN+ ++
Sbjct: 247 QLGCDGVFVGSEVFDGPDPFKKLRSIVQAVQHYNDPHVLAEMSSGLENAMESLNVRGDRI 306
Query: 303 ERFASRS 309
+ F S
Sbjct: 307 QDFGQGS 313
|
|
| UNIPROTKB|G4N4K3 MGG_05980 "Pyridoxine biosynthesis protein PDX1" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 183/307 (59%), Positives = 222/307 (72%)
Query: 8 AVYGNDGAITETKKSP-FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVP 66
A G++G T P F+VK GLAQML+GGVIMDV EQAR+AEEAGACAVMALERVP
Sbjct: 15 ATNGSNG----TSNIPSFAVKAGLAQMLKGGVIMDVTNAEQARIAEEAGACAVMALERVP 70
Query: 67 ADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTP 126
ADIR GGVARMSDP +I+EIK +VTIPVMAKARIGHFVEAQILE++ +DYVDESEVLTP
Sbjct: 71 ADIRRDGGVARMSDPAMIREIKAAVTIPVMAKARIGHFVEAQILESLEVDYVDESEVLTP 130
Query: 127 ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186
ADE+ HI K +F +PFVCGCRNLGEALRRI EGAAMIRTKGEAGTG++++AV H+R++
Sbjct: 131 ADEKYHIEKSDFAVPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGDVVQAVTHMRTLKA 190
Query: 187 DI-RVLRNMDDD---EVFTFAKKIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMM 242
DI R +++ + A+++ L+ QT LGRLPVV+F +MM
Sbjct: 191 DIARAKAALNEGGMPALRAIARELECDPALLKQTVDLGRLPVVNFAAGGIATPADAALMM 250
Query: 243 QLGCDXXXXXXXXXXXXDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL-SDHK 301
QLGCD DP KRA+AIV+A TH+ D ++LAE S GLGEAMVG+N S +
Sbjct: 251 QLGCDGVFVGSGIFKSGDPAKRAKAIVQATTHFRDAKMLAEYSSGLGEAMVGINCDSMQQ 310
Query: 302 VERFASR 308
E+ A R
Sbjct: 311 SEKLAVR 317
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A0QWG8 | PDXS_MYCS2 | 4, ., -, ., -, ., - | 0.6795 | 0.9129 | 0.9339 | yes | no |
| Q5NHE6 | PDXS_FRATT | 4, ., -, ., -, ., - | 0.6724 | 0.9161 | 0.9895 | yes | no |
| Q3ZZB8 | PDXS_DEHSC | 4, ., -, ., -, ., - | 0.6877 | 0.9193 | 0.9726 | yes | no |
| A9WFT9 | PDXS_CHLAA | 4, ., -, ., -, ., - | 0.7543 | 0.9322 | 0.9863 | yes | no |
| P60800 | PDXS_CORDI | 4, ., -, ., -, ., - | 0.6914 | 0.9096 | 0.9494 | yes | no |
| Q6AFB9 | PDXS_LEIXX | 4, ., -, ., -, ., - | 0.7007 | 0.8838 | 0.9163 | yes | no |
| A9B891 | PDXS_HERA2 | 4, ., -, ., -, ., - | 0.7410 | 0.8967 | 0.9488 | yes | no |
| Q69LA6 | PDX11_ORYSJ | No assigned EC number | 0.8471 | 0.9935 | 0.9685 | yes | no |
| A5UY94 | PDXS_ROSS1 | 4, ., -, ., -, ., - | 0.7805 | 0.8967 | 0.9488 | yes | no |
| B2SDL5 | PDXS_FRATM | 4, ., -, ., -, ., - | 0.6724 | 0.9161 | 0.9895 | yes | no |
| Q97LG7 | PDXS_CLOAB | 4, ., -, ., -, ., - | 0.6953 | 0.8967 | 0.9553 | yes | no |
| B0K4N7 | PDXS_THEPX | 4, ., -, ., -, ., - | 0.6933 | 0.9161 | 0.9726 | yes | no |
| B0TAQ4 | PDXS_HELMI | 4, ., -, ., -, ., - | 0.6993 | 0.9225 | 0.9694 | yes | no |
| A7NQB8 | PDXS_ROSCS | 4, ., -, ., -, ., - | 0.7761 | 0.8935 | 0.9453 | yes | no |
| A8LWZ4 | PDXS_SALAI | 4, ., -, ., -, ., - | 0.6725 | 0.9129 | 0.9248 | yes | no |
| A0Q5I1 | PDXS_FRATN | 4, ., -, ., -, ., - | 0.6724 | 0.9161 | 0.9895 | yes | no |
| Q73WF0 | PDXS_MYCPA | 4, ., -, ., -, ., - | 0.6725 | 0.9129 | 0.9339 | N/A | no |
| A7NDQ3 | PDXS_FRATF | 4, ., -, ., -, ., - | 0.6724 | 0.9161 | 0.9895 | yes | no |
| Q14IU8 | PDXS_FRAT1 | 4, ., -, ., -, ., - | 0.6724 | 0.9161 | 0.9895 | yes | no |
| Q9RUL7 | PDXS_DEIRA | 4, ., -, ., -, ., - | 0.6598 | 0.9451 | 0.9543 | yes | no |
| B8I363 | PDXS_CLOCE | 4, ., -, ., -, ., - | 0.6594 | 0.8903 | 0.9452 | yes | no |
| B2A2Z7 | PDXS_NATTJ | 4, ., -, ., -, ., - | 0.6931 | 0.9322 | 0.9796 | yes | no |
| Q9AT63 | PDX1_GINBI | No assigned EC number | 0.8483 | 0.9967 | 1.0 | N/A | no |
| O14027 | PDX1_SCHPO | No assigned EC number | 0.7335 | 0.9290 | 0.9729 | yes | no |
| B9LIK3 | PDXS_CHLSY | 4, ., -, ., -, ., - | 0.7543 | 0.9322 | 0.9863 | yes | no |
| Q9UW83 | PDX1_EMENI | No assigned EC number | 0.7076 | 0.9483 | 0.9671 | yes | no |
| B0KAS1 | PDXS_THEP3 | 4, ., -, ., -, ., - | 0.6898 | 0.9161 | 0.9726 | yes | no |
| Q9FT25 | PDX1_PHAVU | No assigned EC number | 0.9123 | 0.9935 | 0.9871 | N/A | no |
| O80448 | PDX11_ARATH | No assigned EC number | 0.8874 | 0.9935 | 0.9967 | no | no |
| Q2A260 | PDXS_FRATH | 4, ., -, ., -, ., - | 0.6724 | 0.9161 | 0.9895 | yes | no |
| Q0BKT2 | PDXS_FRATO | 4, ., -, ., -, ., - | 0.6724 | 0.9161 | 0.9895 | yes | no |
| Q72KG1 | PDXS_THET2 | 4, ., -, ., -, ., - | 0.7103 | 0.9322 | 0.9863 | yes | no |
| Q8W3D0 | PDX12_ORYSJ | No assigned EC number | 0.8354 | 0.9903 | 0.9808 | no | no |
| B8J2D5 | PDXS_DESDA | 4, ., -, ., -, ., - | 0.7069 | 0.8806 | 0.9317 | yes | no |
| O59905 | PDX1_CERNC | No assigned EC number | 0.6989 | 0.9290 | 0.8396 | N/A | no |
| Q8L940 | PDX13_ARATH | No assigned EC number | 0.9096 | 0.9967 | 1.0 | yes | no |
| B1KYX5 | PDXS_CLOBM | 4, ., -, ., -, ., - | 0.6701 | 0.9161 | 0.9793 | yes | no |
| A4IZB5 | PDXS_FRATW | 4, ., -, ., -, ., - | 0.6724 | 0.9161 | 0.9895 | yes | no |
| Q8RBJ3 | PDXS_THETN | 4, ., -, ., -, ., - | 0.6748 | 0.9193 | 0.9760 | yes | no |
| Q54J47 | PDX1_DICDI | No assigned EC number | 0.7050 | 0.9419 | 0.9573 | yes | no |
| B8G663 | PDXS_CHLAD | 4, ., -, ., -, ., - | 0.7543 | 0.9322 | 0.9863 | yes | no |
| Q5SKD9 | PDXS_THET8 | 4, ., -, ., -, ., - | 0.7103 | 0.9322 | 0.9863 | yes | no |
| Q9L286 | PDXS_STRCO | 4, ., -, ., -, ., - | 0.6690 | 0.9129 | 0.9339 | yes | no |
| A0QIC8 | PDXS_MYCA1 | 4, ., -, ., -, ., - | 0.6725 | 0.9129 | 0.9339 | yes | no |
| Q3Z9H3 | PDXS_DEHE1 | 4, ., -, ., -, ., - | 0.6982 | 0.9193 | 0.9726 | yes | no |
| Q39963 | PDX1_HEVBR | No assigned EC number | 0.9419 | 0.9967 | 1.0 | N/A | no |
| Q8WPW2 | PDX1_SUBDO | No assigned EC number | 0.6564 | 0.9451 | 0.9575 | N/A | no |
| B0TZ17 | PDXS_FRAP2 | 4, ., -, ., -, ., - | 0.6655 | 0.9161 | 0.9895 | yes | no |
| A5FS82 | PDXS_DEHSB | 4, ., -, ., -, ., - | 0.6877 | 0.9193 | 0.9726 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00161108 | hypothetical protein (309 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_Genewise1_v1.C_LG_IX4777 | glutaminase (EC-3.5.1.2) (255 aa) | • | • | • | • | • | 0.991 | |||
 | fgenesh4_pg.C_LG_II002252 | pyridoxal kinase (EC-2.7.1.35) (325 aa) | • | • | • | 0.927 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 310 | |||
| PRK04180 | 293 | PRK04180, PRK04180, pyridoxal biosynthesis lyase P | 0.0 | |
| cd04727 | 283 | cd04727, pdxS, PdxS is a subunit of the pyridoxal | 0.0 | |
| COG0214 | 296 | COG0214, SNZ1, Pyridoxine biosynthesis enzyme [Coe | 0.0 | |
| TIGR00343 | 287 | TIGR00343, TIGR00343, pyridoxal 5'-phosphate synth | 1e-160 | |
| pfam01680 | 197 | pfam01680, SOR_SNZ, SOR/SNZ family | 1e-128 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 3e-08 | |
| COG2022 | 262 | COG2022, ThiG, Uncharacterized enzyme of thiazole | 3e-07 | |
| pfam05690 | 246 | pfam05690, ThiG, Thiazole biosynthesis protein Thi | 5e-07 | |
| PRK00208 | 250 | PRK00208, thiG, thiazole synthase; Reviewed | 9e-07 | |
| cd04728 | 248 | cd04728, ThiG, Thiazole synthase (ThiG) is the tet | 1e-06 | |
| PRK11840 | 326 | PRK11840, PRK11840, bifunctional sulfur carrier pr | 4e-06 | |
| CHL00162 | 267 | CHL00162, thiG, thiamin biosynthesis protein G; Va | 1e-04 | |
| cd00564 | 196 | cd00564, TMP_TenI, Thiamine monophosphate synthase | 3e-04 | |
| cd04730 | 236 | cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD | 5e-04 | |
| TIGR00737 | 319 | TIGR00737, nifR3_yhdG, putative TIM-barrel protein | 6e-04 | |
| PRK00043 | 212 | PRK00043, thiE, thiamine-phosphate pyrophosphoryla | 0.001 | |
| cd02801 | 231 | cd02801, DUS_like_FMN, Dihydrouridine synthase-lik | 0.001 | |
| PRK07695 | 201 | PRK07695, PRK07695, transcriptional regulator TenI | 0.001 | |
| cd04729 | 219 | cd04729, NanE, N-acetylmannosamine-6-phosphate epi | 0.003 |
| >gnl|CDD|179769 PRK04180, PRK04180, pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Score = 561 bits (1449), Expect = 0.0
Identities = 207/284 (72%), Positives = 247/284 (86%), Gaps = 1/284 (0%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIK 85
VK G A+ML+GGVIMDVV EQA++AEEAGA AVMALERVPADIR+ GGVARM+DP++I+
Sbjct: 8 VKRGFAEMLKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIE 67
Query: 86 EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG 145
EI +V+IPVMAKARIGHFVEAQILEA+G+DY+DESEVLTPADEE HI+K +F +PFVCG
Sbjct: 68 EIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCG 127
Query: 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205
RNLGEALRRI EGAAMIRTKGEAGTGN++EAVRH+R + G+IR L +M +DE++T AK+
Sbjct: 128 ARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKE 187
Query: 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRA 265
+ APY+LV + +LGRLPVV+FAAGG+ATPADAA+MMQLG DGVFVGSG+FKSGDP KRA
Sbjct: 188 LQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRA 247
Query: 266 QAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 308
+AIV A THY DPEVLAEVS GLGEAMVG+++ + ER R
Sbjct: 248 RAIVEATTHYDDPEVLAEVSKGLGEAMVGIDIDELPPEERLQER 291
|
Length = 293 |
| >gnl|CDD|240078 cd04727, pdxS, PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Score = 531 bits (1371), Expect = 0.0
Identities = 207/283 (73%), Positives = 247/283 (87%), Gaps = 1/283 (0%)
Query: 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEI 87
G AQML+GGVIMDV EQAR+AEEAGA AVMALERVPADIR+ GGVARM+DP++IKEI
Sbjct: 1 RGFAQMLKGGVIMDVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEI 60
Query: 88 KQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR 147
+V+IPVMAK RIGHFVEAQILEA+G+D +DESEVLTPADEE+HI+KH F++PFVCG R
Sbjct: 61 MDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEHHIDKHKFKVPFVCGAR 120
Query: 148 NLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA 207
NLGEALRRI EGAAMIRTKGEAGTGN++EAVRH+R+V G+IR L++M ++E++ AK+I
Sbjct: 121 NLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQ 180
Query: 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQA 267
APY+LV +T +LGRLPVV+FAAGGVATPADAA+MMQLG DGVFVGSG+FKS +P KRA+A
Sbjct: 181 APYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARA 240
Query: 268 IVRAVTHYSDPEVLAEVSCGLGEAMVGLNL-SDHKVERFASRS 309
IV AVTHY DPE+LAEVS GLGEAMVG+++ S + ER R
Sbjct: 241 IVEAVTHYDDPEILAEVSEGLGEAMVGIDIASLKEEERMQERG 283
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. Length = 283 |
| >gnl|CDD|223292 COG0214, SNZ1, Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 510 bits (1316), Expect = 0.0
Identities = 207/293 (70%), Positives = 245/293 (83%), Gaps = 1/293 (0%)
Query: 17 TETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVA 76
E + VK G AQML+GGVIMDVV EQAR+AEEAGA AVMALERVPADIR+ GGVA
Sbjct: 2 EELRTGTERVKRGFAQMLKGGVIMDVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVA 61
Query: 77 RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKH 136
RM+DP++I+EI +V+IPVMAK RIGHFVEAQILEA+G+D +DESEVLTPADEE HINK
Sbjct: 62 RMADPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKW 121
Query: 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196
F +PFVCG RNLGEALRRI EGAAMIRTKGEAGTGN++EAVRH+R + G+IR L++M +
Sbjct: 122 KFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTE 181
Query: 197 DEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256
DE++ AK++ APY+LV + +LGRLPVV+FAAGGVATPADAA+MMQLG DGVFVGSG+F
Sbjct: 182 DELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 241
Query: 257 KSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 308
KS +P KRA+AIV A THY DPEVLAEVS GLGEAM G+++S+ ER R
Sbjct: 242 KSSNPEKRAKAIVEATTHYDDPEVLAEVSEGLGEAMKGIDISELPEEERLQER 294
|
Length = 296 |
| >gnl|CDD|129443 TIGR00343, TIGR00343, pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Score = 447 bits (1151), Expect = e-160
Identities = 193/274 (70%), Positives = 234/274 (85%), Gaps = 1/274 (0%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIK 85
+K GLAQML+GGVIMDVV PEQA++AEEAGA AVMALERVPADIR+ GGVARMSDP++IK
Sbjct: 1 LKKGLAQMLKGGVIMDVVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIK 60
Query: 86 EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG 145
EI +V+IPVMAK RIGHFVEAQILEA+G+DY+DESEVLTPAD HI+K F++PFVCG
Sbjct: 61 EIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVLTPADWTFHIDKKKFKVPFVCG 120
Query: 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF-TFAK 204
R+LGEALRRI EGAAMIRTKGEAGTGNI+EAVRH+R + +IR ++NM ++E AK
Sbjct: 121 ARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAK 180
Query: 205 KIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264
++ P +L+++ +LG+LPVV+FAAGGVATPADAA+MMQLG DGVFVGSG+FKS +P K
Sbjct: 181 ELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKL 240
Query: 265 AQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLS 298
A+AIV A THY +PE LAEVS LGEAM G+++S
Sbjct: 241 AKAIVEATTHYDNPEKLAEVSKDLGEAMKGISIS 274
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 287 |
| >gnl|CDD|201920 pfam01680, SOR_SNZ, SOR/SNZ family | Back alignment and domain information |
|---|
Score = 363 bits (933), Expect = e-128
Identities = 148/197 (75%), Positives = 175/197 (88%)
Query: 33 MLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT 92
ML+GGVIMDVV EQAR+AEEAGA AVMALERVPADIR+ GGVARMSDP++IKEI +V+
Sbjct: 1 MLKGGVIMDVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMNAVS 60
Query: 93 IPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEA 152
IPVMAK RIGHFVEAQILEAIG+DY+DESEVLTPADE HI+K F +PFVCG RNLGEA
Sbjct: 61 IPVMAKVRIGHFVEAQILEAIGVDYIDESEVLTPADEFFHIDKKKFTVPFVCGARNLGEA 120
Query: 153 LRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDL 212
LRRI EGAAMIRTKGEAGTGN++EAVRH+R + G+IR L++M +DE++T AK++AAPY+L
Sbjct: 121 LRRIWEGAAMIRTKGEAGTGNVVEAVRHMRLMNGEIRRLQSMSEDELYTVAKELAAPYEL 180
Query: 213 VMQTKQLGRLPVVHFAA 229
V Q +LG+LPVV+FAA
Sbjct: 181 VKQVAELGKLPVVNFAA 197
|
Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis. This family was formerly known as UPF0019. Length = 197 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-08
Identities = 48/220 (21%), Positives = 72/220 (32%), Gaps = 47/220 (21%)
Query: 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFV 105
E A+ A EAGA A++ R A D +++KE+ +P+ + I
Sbjct: 16 ELAKAAAEAGADAIIVGTRSSDPEE-----AETDDKEVLKEVAAETDLPLGVQLAINDAA 70
Query: 106 EAQ-----ILEAIGIDYVDESEVLTPADEENHINKHNFR-----IPFVCGCRNLGEALRR 155
A A G D V+ + E+ R + V GE
Sbjct: 71 AAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAA 130
Query: 156 --IREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLV 213
G + G G +AV + +
Sbjct: 131 AAEEAGVDEVGLGNGGGGGGGRDAVPIADLL----------------------------L 162
Query: 214 MQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
+ K+ ++PV A GG+ P DAA + LG DGV VGS
Sbjct: 163 ILAKRGSKVPV--IAGGGINDPEDAAEALALGADGVIVGS 200
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|224933 COG2022, ThiG, Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273
+PV+ A G+ TP+DAA M+LG D V + + + ++ DPV A+A AV
Sbjct: 182 DVPVIVDA--GIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232
|
Length = 262 |
| >gnl|CDD|147701 pfam05690, ThiG, Thiazole biosynthesis protein ThiG | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 5e-07
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
+PV+ A G+ TP+DAA M+LG D V + + + ++ DPV A+A AV
Sbjct: 174 DVPVIVDA--GIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFKLAV 223
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This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway. Length = 246 |
| >gnl|CDD|234687 PRK00208, thiG, thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 9e-07
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
G+ TP+DAA M+LG D V + + + +GDPV A+A AV
Sbjct: 183 GIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV 224
|
Length = 250 |
| >gnl|CDD|240079 cd04728, ThiG, Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 1e-06
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
G+ TP+DAA M+LG D V + + + K+ DPV A+A AV
Sbjct: 183 GIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV 224
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). Length = 248 |
| >gnl|CDD|236998 PRK11840, PRK11840, bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
+PV+ A GV T +DAA+ M+LGCDGV + + + ++ +PV A+A+ AV
Sbjct: 249 TVPVLVDA--GVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAV 298
|
Length = 326 |
| >gnl|CDD|214380 CHL00162, thiG, thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
++PV+ A G+ TP++A+ M+LG GV + + V ++ +P + A+A+ AV
Sbjct: 189 KIPVIIDA--GIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAV 238
|
Length = 267 |
| >gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270
+L+ + +L +PVV A GG+ TP +AA ++ G DGV V S + + DP A+ ++
Sbjct: 140 ELLREIAELVEIPVV--AIGGI-TPENAAEVLAAGADGVAVISAITGADDPAAAARELLA 196
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. Length = 196 |
| >gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 5e-04
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
+ LV + + +PV+ AAGG+A A + LG DGV +G+
Sbjct: 141 DIGTFALVPEVRDAVDIPVI--AAGGIADGRGIAAALALGADGVQMGT 186
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236 |
| >gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 55/244 (22%), Positives = 80/244 (32%), Gaps = 92/244 (37%)
Query: 43 VTPEQARVAEEAGACAVMALERVPAD--IRSQGGVARMSDPQLIKEIKQ----SVTIPVM 96
E A++ EE GA + P + G A + DP LI +I + +V IPV
Sbjct: 76 TMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVT 135
Query: 97 AKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRI 156
K RI G D + HIN
Sbjct: 136 VKIRI------------GWD-------------DAHIN-----------AVEAARIAED- 158
Query: 157 REGAAMI----RTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDL 212
GA + RT+ + +G A +D+
Sbjct: 159 -AGAQAVTLHGRTRAQGYSGE----------------------------------ANWDI 183
Query: 213 VMQTKQLGRLPVVHFAAGGVATPADA-AMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271
+ + KQ R+PV G + +P DA AM+ GCDGV +G G G+P + R
Sbjct: 184 IARVKQAVRIPV--IGNGDIFSPEDAKAMLETTGCDGVMIGRGAL--GNPW-----LFRQ 234
Query: 272 VTHY 275
+ Y
Sbjct: 235 IEQY 238
|
This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319 |
| >gnl|CDD|234590 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.001
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275
+G +P+V A GG+ TP +A +++ G DGV V S + + DP A+A++ A
Sbjct: 156 AAVGDIPIV--AIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRAA 211
|
Length = 212 |
| >gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.001
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 28/91 (30%)
Query: 48 ARVAEEAGACAVMALERVPADI----------RSQGGVARMSDPQLIKEI----KQSVTI 93
A++ EE GA + D+ + G A + DP+L+ EI +++V I
Sbjct: 73 AKIVEELGADGI--------DLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPI 124
Query: 94 PVMAKARIG-----HFVE-AQILEAIGIDYV 118
PV K R+G +E A+ LE G +
Sbjct: 125 PVTVKIRLGWDDEEETLELAKALEDAGASAL 155
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231 |
| >gnl|CDD|181086 PRK07695, PRK07695, transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270
+ + + +PV+ A GG+ TP + ++ G G+ V SG+F S +P +A+
Sbjct: 139 EELSDIARALSIPVI--AIGGI-TPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAE 195
Query: 271 AV 272
++
Sbjct: 196 SI 197
|
Length = 201 |
| >gnl|CDD|240080 cd04729, NanE, N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.003
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
++L+ + ++ +PV+ A G + +P AA ++LG D V VGS
Sbjct: 166 FELLKELRKALGIPVI--AEGRINSPEQAAKALELGADAVVVGS 207
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. Length = 219 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 310 | |||
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 100.0 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 100.0 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 100.0 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 100.0 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 100.0 | |
| PF01680 | 208 | SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p | 99.96 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 99.89 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 99.89 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 99.89 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 99.88 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 99.88 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 99.87 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 99.87 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 99.86 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 99.86 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 99.83 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 99.79 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 99.78 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.74 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.71 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 99.71 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.7 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 99.7 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.7 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 99.7 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 99.69 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 99.68 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.67 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 99.65 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.65 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 99.64 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 99.64 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.63 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.63 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.63 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 99.62 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 99.62 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 99.62 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 99.61 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 99.61 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 99.6 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 99.59 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 99.58 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 99.58 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 99.57 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 99.57 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 99.56 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 99.55 | |
| PLN02591 | 250 | tryptophan synthase | 99.55 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 99.54 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 99.53 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 99.53 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 99.53 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 99.52 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 99.52 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.51 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 99.51 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 99.51 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 99.5 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 99.5 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 99.49 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 99.49 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 99.48 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 99.48 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 99.48 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 99.48 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 99.47 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.47 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 99.47 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 99.46 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 99.46 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 99.45 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 99.45 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 99.44 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.44 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 99.43 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 99.43 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 99.43 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 99.43 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 99.42 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 99.42 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 99.41 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 99.41 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 99.4 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 99.4 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 99.39 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 99.39 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 99.39 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 99.39 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 99.39 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 99.38 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 99.38 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 99.37 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.36 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 99.35 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 99.34 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 99.33 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 99.33 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 99.33 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 99.32 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 99.3 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 99.3 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 99.3 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 99.3 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 99.3 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 99.29 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 99.29 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 99.28 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 99.28 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 99.28 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 99.27 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 99.27 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.26 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 99.26 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 99.25 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 99.25 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 99.22 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 99.21 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 99.2 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 99.19 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 99.18 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 99.18 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 99.16 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.13 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 99.13 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 99.12 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 99.12 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 99.11 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 99.09 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.07 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.06 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 99.06 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.05 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 99.04 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 99.03 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 99.03 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 99.03 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 99.01 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.01 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.0 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 98.99 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 98.97 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 98.96 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 98.95 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 98.95 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 98.93 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 98.93 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.93 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 98.92 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 98.92 | |
| PRK08005 | 210 | epimerase; Validated | 98.92 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 98.9 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 98.89 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 98.88 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 98.86 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 98.86 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 98.85 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 98.84 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 98.83 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 98.82 | |
| PLN02979 | 366 | glycolate oxidase | 98.81 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 98.79 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 98.78 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 98.78 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 98.78 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 98.77 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 98.76 | |
| PRK14057 | 254 | epimerase; Provisional | 98.74 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 98.73 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 98.73 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 98.71 | |
| PLN02535 | 364 | glycolate oxidase | 98.71 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 98.71 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 98.7 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 98.7 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 98.67 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 98.67 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 98.66 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 98.64 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 98.62 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 98.6 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 98.59 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 98.55 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 98.55 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 98.55 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 98.53 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 98.52 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 98.51 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 98.48 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 98.47 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 98.45 | |
| PRK06852 | 304 | aldolase; Validated | 98.45 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 98.43 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 98.41 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 98.4 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 98.37 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 98.36 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 98.33 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 98.29 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 98.26 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 98.25 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 98.25 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 98.19 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 98.19 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 98.15 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 98.14 | |
| PRK13305 | 218 | sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; | 98.14 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.12 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.12 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 98.11 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.09 | |
| COG1304 | 360 | idi Isopentenyl diphosphate isomerase (BS_ypgA, MT | 98.09 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 98.08 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.08 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 98.05 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.05 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 98.04 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 98.03 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 97.98 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.98 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 97.95 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 97.95 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 97.92 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.92 | |
| KOG0623 | 541 | consensus Glutamine amidotransferase/cyclase [Amin | 97.9 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 97.89 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 97.86 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 97.77 | |
| PF09370 | 268 | TIM-br_sig_trns: TIM-barrel signal transduction pr | 97.75 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 97.73 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.72 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 97.67 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 97.67 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 97.66 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 97.64 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 97.63 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 97.61 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 97.59 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.58 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 97.57 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 97.55 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 97.54 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 97.52 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.49 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 97.49 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 97.47 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 97.47 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 97.46 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 97.43 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 97.41 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.41 | |
| cd04725 | 216 | OMP_decarboxylase_like Orotidine 5'-phosphate deca | 97.39 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.36 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.35 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 97.35 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 97.35 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.32 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.32 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.3 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 97.29 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.29 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 97.28 | |
| COG0149 | 251 | TpiA Triosephosphate isomerase [Carbohydrate trans | 97.28 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 97.28 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 97.27 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 97.26 | |
| KOG2333 | 614 | consensus Uncharacterized conserved protein [Gener | 97.26 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.25 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 97.24 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.24 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 97.24 | |
| TIGR01740 | 213 | pyrF orotidine 5'-phosphate decarboxylase, subfami | 97.24 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 97.24 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 97.2 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 97.2 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 97.17 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 97.17 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.16 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 97.15 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 97.13 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 97.03 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 97.03 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 97.02 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 97.0 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 96.97 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.92 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 96.92 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.91 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 96.9 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 96.89 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 96.88 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 96.8 | |
| PRK10128 | 267 | 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | 96.8 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 96.79 | |
| PRK10558 | 256 | alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro | 96.78 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.76 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 96.75 | |
| COG0284 | 240 | PyrF Orotidine-5'-phosphate decarboxylase [Nucleot | 96.74 | |
| TIGR03239 | 249 | GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co | 96.71 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 96.7 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 96.69 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 96.68 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 96.68 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 96.68 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 96.67 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 96.64 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 96.64 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 96.64 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 96.63 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 96.59 | |
| COG3836 | 255 | HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola | 96.57 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 96.57 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 96.56 | |
| PRK05283 | 257 | deoxyribose-phosphate aldolase; Provisional | 96.56 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.56 | |
| KOG1799 | 471 | consensus Dihydropyrimidine dehydrogenase [Nucleot | 96.53 | |
| TIGR00875 | 213 | fsa_talC_mipB fructose-6-phosphate aldolase, TalC/ | 96.51 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.48 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 96.48 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 96.47 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 96.45 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 96.44 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 96.43 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 96.42 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 96.39 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 96.38 | |
| PF00215 | 226 | OMPdecase: Orotidine 5'-phosphate decarboxylase / | 96.36 | |
| COG5564 | 276 | Predicted TIM-barrel enzyme, possibly a dioxygenas | 96.35 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 96.35 | |
| KOG1436 | 398 | consensus Dihydroorotate dehydrogenase [Nucleotide | 96.33 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 96.33 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 96.32 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 96.3 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 96.28 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.28 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 96.17 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 96.1 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 96.1 | |
| TIGR02311 | 249 | HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola | 96.08 | |
| PRK11750 | 1485 | gltB glutamate synthase subunit alpha; Provisional | 96.05 | |
| COG0069 | 485 | GltB Glutamate synthase domain 2 [Amino acid trans | 96.03 | |
| PRK01362 | 214 | putative translaldolase; Provisional | 96.03 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 96.02 | |
| PLN02979 | 366 | glycolate oxidase | 96.01 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 96.01 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 96.0 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 95.99 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 95.98 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 95.96 | |
| TIGR02321 | 290 | Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f | 95.92 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 95.9 | |
| PRK00042 | 250 | tpiA triosephosphate isomerase; Provisional | 95.88 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 95.86 | |
| TIGR00419 | 205 | tim triosephosphate isomerase. Triosephosphate iso | 95.82 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 95.7 | |
| KOG2334 | 477 | consensus tRNA-dihydrouridine synthase [Translatio | 95.64 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 95.63 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 95.56 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 95.56 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 95.49 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 95.46 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 95.46 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 95.4 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 95.36 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 95.28 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 95.2 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 95.2 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 95.14 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 95.11 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 95.08 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.06 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 95.05 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 94.99 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 94.95 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.92 | |
| PRK12656 | 222 | fructose-6-phosphate aldolase; Reviewed | 94.89 | |
| PRK14565 | 237 | triosephosphate isomerase; Provisional | 94.86 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 94.85 | |
| cd00311 | 242 | TIM Triosephosphate isomerase (TIM) is a glycolyti | 94.81 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 94.81 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 94.8 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 94.79 | |
| PRK14567 | 253 | triosephosphate isomerase; Provisional | 94.76 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 94.74 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 94.66 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 94.6 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 94.55 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 94.54 | |
| COG3684 | 306 | LacD Tagatose-1,6-bisphosphate aldolase [Carbohydr | 94.53 | |
| KOG4013 | 255 | consensus Predicted Cu2+ homeostasis protein CutC | 94.42 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 94.33 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 94.31 | |
| PRK12653 | 220 | fructose-6-phosphate aldolase; Reviewed | 94.26 | |
| PRK12655 | 220 | fructose-6-phosphate aldolase; Reviewed | 94.25 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 94.2 | |
| cd01571 | 302 | NAPRTase_B Nicotinate phosphoribosyltransferase (N | 94.19 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 94.17 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 94.16 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 94.16 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 94.11 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 94.1 | |
| PTZ00333 | 255 | triosephosphate isomerase; Provisional | 94.09 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 94.01 | |
| COG2876 | 286 | AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate ( | 93.92 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 93.88 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 93.8 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 93.78 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 93.75 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 93.71 | |
| PLN02429 | 315 | triosephosphate isomerase | 93.6 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 93.56 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 93.49 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 93.49 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 93.42 | |
| PRK14905 | 355 | triosephosphate isomerase/PTS system glucose/sucro | 93.27 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 93.26 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 93.24 | |
| PRK05500 | 477 | bifunctional orotidine 5'-phosphate decarboxylase/ | 93.2 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 93.06 | |
| COG4981 | 717 | Enoyl reductase domain of yeast-type FAS1 [Lipid m | 93.02 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 92.95 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 92.92 | |
| TIGR00222 | 263 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 92.68 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 92.6 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 92.59 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 92.55 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 92.51 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 92.44 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 92.4 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 92.34 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 92.33 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 92.23 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 92.21 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 92.18 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 92.09 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 92.08 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 92.0 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 91.93 | |
| TIGR03326 | 412 | rubisco_III ribulose bisphosphate carboxylase, typ | 91.87 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 91.82 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 91.82 | |
| TIGR02127 | 261 | pyrF_sub2 orotidine 5'-phosphate decarboxylase, su | 91.81 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 91.78 | |
| PF01487 | 224 | DHquinase_I: Type I 3-dehydroquinase; InterPro: IP | 91.75 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 91.7 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 91.69 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 91.66 | |
| PRK06256 | 336 | biotin synthase; Validated | 91.64 | |
| PLN02535 | 364 | glycolate oxidase | 91.63 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 91.59 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 91.57 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 91.47 | |
| PRK12376 | 236 | putative translaldolase; Provisional | 91.41 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 91.39 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 91.32 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 91.19 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 91.18 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 91.13 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 91.02 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 90.99 | |
| PRK15452 | 443 | putative protease; Provisional | 90.93 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 90.89 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 90.75 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 90.71 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 90.7 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 90.53 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 90.48 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 90.38 | |
| PRK08508 | 279 | biotin synthase; Provisional | 90.35 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 90.19 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 90.19 | |
| TIGR00676 | 272 | fadh2 5,10-methylenetetrahydrofolate reductase, pr | 90.04 | |
| COG1465 | 376 | Predicted alternative 3-dehydroquinate synthase [A | 89.88 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 89.77 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 89.6 | |
| PLN02561 | 253 | triosephosphate isomerase | 89.59 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 89.55 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 89.55 | |
| cd00516 | 281 | PRTase_typeII Phosphoribosyltransferase (PRTase) t | 89.37 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 89.35 | |
| PRK13384 | 322 | delta-aminolevulinic acid dehydratase; Provisional | 89.33 | |
| cd08207 | 406 | RLP_NonPhot Ribulose bisphosphate carboxylase like | 89.29 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 89.2 | |
| PRK08662 | 343 | nicotinate phosphoribosyltransferase; Reviewed | 89.04 | |
| PRK09283 | 323 | delta-aminolevulinic acid dehydratase; Validated | 89.02 | |
| PF00809 | 210 | Pterin_bind: Pterin binding enzyme This Prosite en | 88.91 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 88.8 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 88.77 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 88.75 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 88.61 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 88.44 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 88.4 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 88.31 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 88.22 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 88.07 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 87.93 | |
| PF03328 | 221 | HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family | 87.9 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 87.73 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 87.62 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 87.61 |
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=336.95 Aligned_cols=295 Identities=82% Similarity=1.261 Sum_probs=284.2
Q ss_pred eeeec-cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcc
Q 021609 16 ITETK-KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIP 94 (310)
Q Consensus 16 ~~~~~-~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iP 94 (310)
+++.+ +++|+++.|+.|+|++|.|+++.++++|+.++++||.+++.|++.|.++|..+|.++|.++..+++|++++.+|
T Consensus 1 ~t~a~~k~pfsvK~GLAQmLkGGvImdVv~~eQA~iAE~aGACaVmalervPadiR~~GgV~RMsDP~mIKei~~aVsiP 80 (296)
T KOG1606|consen 1 ITEAKFKSPFSVKVGLAQMLKGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPRMIKEIKNAVSIP 80 (296)
T ss_pred CccccccCCchhhHHHHHHhcCCeEEEecCHHHHHHHHhcCcceEeeeccCCHhHHhcCCeeecCCHHHHHHHHHhccch
Confidence 35666 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcch
Q 021609 95 VMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNI 174 (310)
Q Consensus 95 v~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~ 174 (310)
+..|.+++++-.+|++++.|+|++..+..+++.+....++++++.+++.++|++.-|+.|-+..|+.+|.+.|..+||++
T Consensus 81 VMAk~RiGHFVEAQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v 160 (296)
T KOG1606|consen 81 VMAKVRIGHFVEAQILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDV 160 (296)
T ss_pred hhhhhhhhhhhHHHHHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999998899999
Q ss_pred HHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 175 IEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 175 ~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
.++++++|+....++.+...++|+++.|++....|++++++.++..++||+-+|+|||.||.|+.-++++|||||.|||.
T Consensus 161 ~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSg 240 (296)
T KOG1606|consen 161 SEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSG 240 (296)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccchhhhhcccCC
Q 021609 255 VFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERFASRSE 310 (310)
Q Consensus 255 i~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (310)
+++++||.+.++.+++++.+|.+|+.+.++++-+|++|.|++++++++++|+++|+
T Consensus 241 iFks~dP~k~a~aiVqAvthy~dp~~L~evS~~Lg~aM~g~~i~~~~~~~f~ngs~ 296 (296)
T KOG1606|consen 241 IFKSGDPVKRARAIVQAVTHYDDPAKLAEVSSGLGEAMVGISIQSIKEARFANGSR 296 (296)
T ss_pred cccCCCHHHHHHHHHHHHHccCCHHHHHHHhccHHHHhhcccccchhhhhccccCC
Confidence 99999999999999999999999999999999999999999999999999999985
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-44 Score=322.94 Aligned_cols=283 Identities=68% Similarity=1.052 Sum_probs=255.7
Q ss_pred eecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHH
Q 021609 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFV 105 (310)
Q Consensus 26 ~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~ 105 (310)
++.|+.++||+|+|++++++++|+.++++||.+++.|++.|.++|..||.+++.+++.|++|++.+++||+.+.+++++.
T Consensus 1 ~k~~~a~~~kggvimdv~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~kigh~~ 80 (287)
T TIGR00343 1 LKKGLAQMLKGGVIMDVVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVRIGHFV 80 (287)
T ss_pred CchhHHHHhcCCeEEEeCCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEeeccHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEeCCCCCch-hHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhh
Q 021609 106 EAQILEAIGIDYVDESEVLTPA-DEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSV 184 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~~~~-~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~ 184 (310)
+++.++++|+|+|..+..+.|. ++...+ ++.++++++++|.|++|++++.+.|+|+|.+.+.+||+++.++++|+|.+
T Consensus 81 Ea~~L~~~GvDiIDeTe~lrPade~~~~~-K~~f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~ 159 (287)
T TIGR00343 81 EAQILEALGVDYIDESEVLTPADWTFHID-KKKFKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKI 159 (287)
T ss_pred HHHHHHHcCCCEEEccCCCCcHHHHHHHH-HHHcCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHH
Confidence 9999999999999877666554 444444 34469999999999999999999999999999999999999999999988
Q ss_pred ccceEeeccc-ChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 185 MGDIRVLRNM-DDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 185 ~~~~~~l~~~-~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
....+.+..+ +.++++.+++...+++++++++++..++||+-||.|||.|++|+..++++|||||+|||+|++++||..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~ 239 (287)
T TIGR00343 160 NEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEK 239 (287)
T ss_pred HHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHH
Confidence 7776665554 345566667777888999999999889999745789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCChhhhhhhhhhcccchhcccCccchh-hhhcccC
Q 021609 264 RAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASRS 309 (310)
Q Consensus 264 ~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 309 (310)
.+++|++++++|.+|+.+.++++.+|++|+|++++.++- |||+.|.
T Consensus 240 ~akafv~ai~~~~~~~~~~e~s~~~~~~m~g~~~~~~~~~~~~~~r~ 286 (287)
T TIGR00343 240 LAKAIVEATTHYDNPEKLAEVSKDLGEAMKGISISSISEAERLQERG 286 (287)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHccccccCCCCccccCCHHHHhhhcC
Confidence 999999999999999999999999999999999999875 7888875
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=309.62 Aligned_cols=291 Identities=71% Similarity=1.097 Sum_probs=275.8
Q ss_pred eeccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 18 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
+.+.++..+++|+.+++|+|+|++++++++|+.++++||.+++.|+..|.++|+.||.++|.+++.+++|..++.+||..
T Consensus 3 ~~~~gt~~vK~g~a~m~KGGVIMDV~n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~eim~aVsIPVMA 82 (296)
T COG0214 3 ELRTGTERVKRGFAQMLKGGVIMDVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMA 82 (296)
T ss_pred ccccccHHHHhhHHHHhcCCeEEEecCHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHHHHHHhcccceee
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHH
Q 021609 98 KARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
|.+++++..++.+++.|+|.+..+..++|.+....+.++.|.+++.++++++-||.|-+..|+.+|.+.|-.+||++.++
T Consensus 83 KvRIGH~~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eA 162 (296)
T COG0214 83 KVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEA 162 (296)
T ss_pred eeecchhHHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHH
Confidence 99999999999999999999998888999999999988889999999999999999999999999999998899999999
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
++|+|.....++.+...+.|+++.++++...|+++++++++..++||+-+|.|||.||.|+.-++++|||||.|||.|++
T Consensus 163 VrHmr~i~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 163 VRHMRKINGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 99999998888888999999988788889999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccchh-hhhccc
Q 021609 258 SGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 308 (310)
Q Consensus 258 a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 308 (310)
++||.+.++.++++..+|.+|+.+.+++..+|++|+|++.+.+.- +|.+.|
T Consensus 243 S~~P~~~A~AIV~A~~~yddp~~laevs~~lg~~M~Gi~i~~l~~~~rlq~R 294 (296)
T COG0214 243 SSNPEKRAKAIVEATTHYDDPEVLAEVSEGLGEAMKGIDISELPEEERLQER 294 (296)
T ss_pred CCCHHHHHHHHHHHHHccCCHHHHHHHHHHhccccCCCChhhCCHHHHHHhc
Confidence 999999999999999999999999999999999999999999875 455554
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-44 Score=319.58 Aligned_cols=288 Identities=69% Similarity=1.080 Sum_probs=258.6
Q ss_pred ccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 20 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
+.++|.++.|+.++||+|+|++++++++|+..+++|++++ .+| .+|.+.+..+|.+++..++.++++++.+++||+.+
T Consensus 2 ~~~~~~~k~g~a~m~kggvimdv~~~~~a~iae~~g~~~v-~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVigk 80 (293)
T PRK04180 2 ETGTERVKRGFAEMLKGGVIMDVVNAEQAKIAEEAGAVAV-MALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAK 80 (293)
T ss_pred CCccHHHHHHHHHHhcCCeEEEeCCHHHHHHHHHhChHHH-HHccCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeEEe
Confidence 3578999999999999999999999999999999999997 554 88888888899999999999999999999999999
Q ss_pred cccCcHHHHHHHHHcCCCEEEeCCCCCchh-HHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHH
Q 021609 99 ARIGHFVEAQILEAIGIDYVDESEVLTPAD-EENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~-~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
.+++++.+++.++++|+|+|..+..+.|.+ +...+ ++.+++++++++.|++|++++.+.|+|+|.+.|-.+||++.++
T Consensus 81 ~Righ~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~-K~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~a 159 (293)
T PRK04180 81 ARIGHFVEAQILEALGVDYIDESEVLTPADEEYHID-KWDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEA 159 (293)
T ss_pred ehhhHHHHHHHHHHcCCCEEeccCCCCchHHHHHHH-HHHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHH
Confidence 999999999999999999998666665543 34444 4456999999999999999999999999999998899999999
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
++|+|.....++.+...+++....+++...+++++++++++..++||+-||.|||.|++|+..++++|||+|+|||+|++
T Consensus 160 v~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 160 VRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 99999988887777777776654445556788999999999889999734679999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccch-hhhhcccC
Q 021609 258 SGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK-VERFASRS 309 (310)
Q Consensus 258 a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 309 (310)
++||...+++|++++++|.+|+.+.++++.+|++|+|++++.++ -|+|+.|.
T Consensus 240 s~dP~~~akafv~ai~~~~~~~~~~~~s~~~~~~m~g~~~~~~~~~~~~~~r~ 292 (293)
T PRK04180 240 SGDPEKRARAIVEATTHYDDPEVLAEVSKGLGEAMVGIDIDELPPEERLQERG 292 (293)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHcccccccCCCccccCCHHHHhhhcC
Confidence 99999999999999999999999999999999999999999975 57888875
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=293.07 Aligned_cols=280 Identities=71% Similarity=1.117 Sum_probs=248.5
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHH
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEA 107 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a 107 (310)
+|+.++|++|.|++++++++|+.++++||.+++.|+..|.++|..+|.+++..++.|++|++.+++||+.+.+.++..++
T Consensus 1 ~~~~~~~~~g~~~~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea 80 (283)
T cd04727 1 RGFAQMLKGGVIMDVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVRIGHFVEA 80 (283)
T ss_pred CcHHHHhcCCeEEEeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeeehhHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999998888999
Q ss_pred HHHHHcCCCEEEeCCCCCc-hhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 108 QILEAIGIDYVDESEVLTP-ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~-~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
+.+.++|+|.|..+....| .++...++.. ++++++++|.|.+|++++.++|+|+|.+.+.+||+++.++++|.|....
T Consensus 81 ~~L~eaGvDiIDaT~r~rP~~~~~~~iK~~-~~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~ 159 (283)
T cd04727 81 QILEALGVDMIDESEVLTPADEEHHIDKHK-FKVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNG 159 (283)
T ss_pred HHHHHcCCCEEeccCCCCcHHHHHHHHHHH-cCCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 9999999999975555444 4566666554 4999999999999999999999999999999999998999999999887
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
.++.+...+++..+.+++...+++++++++++..++||+.||.|||.|++|+.+++++||++|+|||+|++++||...++
T Consensus 160 ~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk 239 (283)
T cd04727 160 EIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRAR 239 (283)
T ss_pred HHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHH
Confidence 76666666655432223334678999999999888999734679999999999999999999999999999999999999
Q ss_pred HHHHHHhccCChhhhhhhhhhcccchhcccCccchh-hhhccc
Q 021609 267 AIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 308 (310)
Q Consensus 267 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 308 (310)
+|++.+++|.+|..+.++++-+|.+|.|++++.+|. |||..|
T Consensus 240 ~f~~ai~~~~~~~~~~e~~~~~~~~m~~~~~~~~~~~~~~~~~ 282 (283)
T cd04727 240 AIVEAVTHYDDPEILAEVSEGLGEAMVGIDIASLKEEERMQER 282 (283)
T ss_pred HHHHHHHhcCCHHHHHHHHcccccCCCCcccccCCHHHHhccC
Confidence 999999999999999999999999999999998775 577654
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) [] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=208.74 Aligned_cols=206 Identities=76% Similarity=1.206 Sum_probs=174.3
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
++|.++.|+.++|++|.|++++++++|+.++++||.+++.|++.|.++|..||.++|.++..+++|.+++.+||+.|-++
T Consensus 1 g~~~~k~gla~mlkGGVIMDV~n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~aVsIPVMAK~RI 80 (208)
T PF01680_consen 1 GTFRVKRGLAQMLKGGVIMDVTNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDAVSIPVMAKVRI 80 (208)
T ss_dssp SCHHHHHHHHHTTTTEEEEEESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH-SSEEEEEEET
T ss_pred CchhHHhhHHHHhcCCeEEEecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHheEeceeecccc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHH
Q 021609 102 GHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181 (310)
Q Consensus 102 ~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~ 181 (310)
|++-.+|++++.|+|++..+..++|.+-...+.++.|.+++.++++++-||.|-+..|+.++.+.|-.+||++.++++|+
T Consensus 81 GHfvEAqiLealgVD~IDESEVLTpAD~~~HI~K~~F~vPFVcGarnLGEALRRI~EGAaMIRtKGEaGTGnvveAVrH~ 160 (208)
T PF01680_consen 81 GHFVEAQILEALGVDYIDESEVLTPADEENHIDKHNFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHM 160 (208)
T ss_dssp T-HHHHHHHHHTT-SEEEEETTS--S-SS----GGG-SS-EEEEESSHHHHHHHHHTT-SEEEEETTTTST-THHHHHHH
T ss_pred ceeehhhhHHHhCCceeccccccccccccccccchhCCCCeEecCCCHHHHHhhHHhhhhhhcccCCCCCCcHHHHHHHH
Confidence 99999999999999999999988998888899999999999999999999999999999999999988999999999999
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEe
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHF 227 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~i 227 (310)
|.....++.+..+++|+++.+++....|++++.++++..++||+-+
T Consensus 161 R~i~~eI~~l~~~~~~el~~~Ak~~~ap~eLv~~~~~~grLPVvnF 206 (208)
T PF01680_consen 161 RTINGEIRRLQNMDDEELFAFAKEIGAPYELVKEVAELGRLPVVNF 206 (208)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHHHTCGHHHHHHHHHHTSSSSEEE
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCcccC
Confidence 9998889999999999999999999999999999999999999744
|
Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A .... |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=178.57 Aligned_cols=189 Identities=22% Similarity=0.322 Sum_probs=151.2
Q ss_pred cccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCC
Q 021609 37 GVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGI 115 (310)
Q Consensus 37 g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGa 115 (310)
|++....++ ++|+.|+++||++++.+ ++.+.|+|+ ++.++.+++.+++||+.++++.+..++..+.++||
T Consensus 64 g~i~~~~~~~~~A~~~~~~GA~aisvl----te~~~f~g~-----~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GA 134 (260)
T PRK00278 64 GVIREDFDPVEIAKAYEAGGAACLSVL----TDERFFQGS-----LEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGA 134 (260)
T ss_pred CccCCCCCHHHHHHHHHhCCCeEEEEe----cccccCCCC-----HHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCC
Confidence 555555555 78999999999999665 566778777 89999999999999999999876667889999999
Q ss_pred CEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecc
Q 021609 116 DYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 116 d~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
|.|+ ....+++.++.++++. +..++.++++++|.+|+.++.++|+++++++++.. .+
T Consensus 135 D~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~rdl---------------------~~ 193 (260)
T PRK00278 135 DAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINNRNL---------------------KT 193 (260)
T ss_pred CEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCc---------------------cc
Confidence 9995 5555666677777766 55789999999999999999999999999986531 11
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
..++++...++.+.. ..|++ +.|||.+++|+.+++.+|+|+|+||++|++++||...+++|+
T Consensus 194 ------------~~~d~~~~~~l~~~~p~~~~vI--aegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~ 257 (260)
T PRK00278 194 ------------FEVDLETTERLAPLIPSDRLVV--SESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALRELL 257 (260)
T ss_pred ------------ccCCHHHHHHHHHhCCCCCEEE--EEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHh
Confidence 122234444444432 24776 779999999999999999999999999999999998887664
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=180.97 Aligned_cols=193 Identities=22% Similarity=0.323 Sum_probs=152.5
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccCcHHHHHHHHHc
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIGHFVEAQILEAI 113 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~~~~~a~~~~~a 113 (310)
+|+|....+| ++|+.|+++||.+|+.| ++.+.|+|+ ++.++++++. +++||++||++-+..++..+..+
T Consensus 132 kG~I~~~~dp~~iA~~Ye~~GA~aISVL----Td~~~F~Gs-----~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~ 202 (338)
T PLN02460 132 RGVLRENFDPVEIAQAYEKGGAACLSVL----TDEKYFQGS-----FENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSK 202 (338)
T ss_pred CCccCCCCCHHHHHHHHHhCCCcEEEEe----cCcCcCCCC-----HHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHc
Confidence 4777766677 78999999999999888 677889988 8999999998 99999999998754455556669
Q ss_pred CCCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHh-CCCEEEEcCCCCCcchHHHHHHHHhhccceEe
Q 021609 114 GIDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIRE-GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 114 Gad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~-Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
|||.|+ +...+++.++.++++. +..|+.+++.+||.+|+.++.++ |+++|+++++.
T Consensus 203 GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINNRd--------------------- 261 (338)
T PLN02460 203 GADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINNRS--------------------- 261 (338)
T ss_pred CCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCCC---------------------
Confidence 999996 7777887788777766 67899999999999999999998 99999999863
Q ss_pred ecccChhHHHHhhhccCCcHHHHH-----HHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVM-----QTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~-----~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a 265 (310)
+.++..| .....++.. .+.. .+ +++++++||+|++|+..+..+|+|+|+||++||+++||....
T Consensus 262 L~Tf~vD--------l~~t~~L~~~~~~~~i~~-~~--~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l 330 (338)
T PLN02460 262 LETFEVD--------ISNTKKLLEGERGEQIRE-KG--IIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGI 330 (338)
T ss_pred CCcceEC--------HHHHHHHhhhccccccCC-CC--eEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHH
Confidence 2232211 111122222 1110 12 333489999999999999999999999999999999998877
Q ss_pred HHHH
Q 021609 266 QAIV 269 (310)
Q Consensus 266 ~~l~ 269 (310)
++|+
T Consensus 331 ~~L~ 334 (338)
T PLN02460 331 AGLF 334 (338)
T ss_pred HHHh
Confidence 7664
|
|
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=173.85 Aligned_cols=191 Identities=23% Similarity=0.356 Sum_probs=153.0
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|+|....+| ++|+.|+++||.+++.| ++.++|.|+ ++.++.+++.+.+||++||++-+..++..+...|
T Consensus 59 ~G~ir~d~dp~~ia~~Ye~~GAa~iSVL----Td~~~F~Gs-----~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~G 129 (254)
T COG0134 59 KGLIREDFDPVEIAKAYEEGGAAAISVL----TDPKYFQGS-----FEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAG 129 (254)
T ss_pred CCcccccCCHHHHHHHHHHhCCeEEEEe----cCccccCCC-----HHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcC
Confidence 4666656666 67999999999999888 677888888 9999999999999999999988656667777799
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||.|+ +...++..++.+++.. +..|+.+++++||.+|+.++.++|+++|+++++.. .
T Consensus 130 ADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIGINnRdL---------------------~ 188 (254)
T COG0134 130 ADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIGINNRDL---------------------T 188 (254)
T ss_pred cccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEEEeCCCc---------------------c
Confidence 99996 7777777777777766 66899999999999999999999999999998632 2
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
++..| ......+...+.+ + +++|+.+||++++|+.++...|+||++||+++|+++||....+++
T Consensus 189 tf~vd--------l~~t~~la~~~p~--~--~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l 252 (254)
T COG0134 189 TLEVD--------LETTEKLAPLIPK--D--VILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALREL 252 (254)
T ss_pred hheec--------HHHHHHHHhhCCC--C--cEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHHh
Confidence 22211 1112233333332 1 333489999999999999999999999999999999998777655
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.9e-21 Score=169.86 Aligned_cols=190 Identities=18% Similarity=0.238 Sum_probs=150.8
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|.+....++ ++|+.|+++||.+|+.| ++.+.|+|+ ++.++.+++.+++||+.|+++.+..++..+..+|
T Consensus 54 ~G~i~~~~d~~~~A~~y~~~GA~aISVl----Te~~~F~Gs-----~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~G 124 (247)
T PRK13957 54 AGELRADYHPVQIAKTYETLGASAISVL----TDQSYFGGS-----LEDLKSVSSELKIPVLRKDFILDEIQIREARAFG 124 (247)
T ss_pred CCCcCCCCCHHHHHHHHHHCCCcEEEEE----cCCCcCCCC-----HHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcC
Confidence 4666666666 78999999999999766 566788888 8999999999999999999998766666667799
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||.|+ +...+++.++.+++.. +..|+.+++++||.+|+.++.++|+++|++++|.. .
T Consensus 125 ADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL---------------------~ 183 (247)
T PRK13957 125 ASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDL---------------------D 183 (247)
T ss_pred CCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCC---------------------c
Confidence 99996 7777887788877766 67899999999999999999999999999998732 2
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
++..| .....++...+.+ +..+| +++||+|++|+.++... +|||+||+++|+++||....++|
T Consensus 184 t~~vd--------~~~~~~L~~~ip~--~~~~I--sESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~~~l 246 (247)
T PRK13957 184 TFQIH--------QNLVEEVAAFLPP--NIVKV--GESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred cceEC--------HHHHHHHHhhCCC--CcEEE--EcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHHHHh
Confidence 22211 1112333333332 23333 89999999999998876 99999999999999998776654
|
|
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-22 Score=177.55 Aligned_cols=191 Identities=26% Similarity=0.381 Sum_probs=141.7
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|.+....++ ++|+.|+++||++|+.| ++.+.|+|+ ++.+..+++.+++|++.||++-+..++..+..+|
T Consensus 61 ~G~i~~~~d~~~~a~~y~~~GA~aiSVl----Te~~~F~Gs-----~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~G 131 (254)
T PF00218_consen 61 KGDIREDFDPAEIAKAYEEAGAAAISVL----TEPKFFGGS-----LEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAG 131 (254)
T ss_dssp TEESBSS-SHHHHHHHHHHTT-SEEEEE------SCCCHHH-----HHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT
T ss_pred CCccCccCCHHHHHHHHHhcCCCEEEEE----CCCCCCCCC-----HHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcC
Confidence 4667776677 78999999999999777 677888888 8999999999999999999987656666777799
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||+|+ +...+++..+.+++.. +..|+.+++.+||.+|+.++.++|+++++++++. +.
T Consensus 132 ADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGINnRd---------------------L~ 190 (254)
T PF00218_consen 132 ADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGINNRD---------------------LK 190 (254)
T ss_dssp -SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEESBC---------------------TT
T ss_pred CCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEeCcc---------------------cc
Confidence 99996 7777887777777766 6689999999999999999999999999999863 23
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
++..| .....++...+.+ ++.+ ++.+||++++|+.++..+|+|||+||++||+++||....++|
T Consensus 191 tf~vd--------~~~~~~l~~~ip~--~~~~--iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 191 TFEVD--------LNRTEELAPLIPK--DVIV--ISESGIKTPEDARRLARAGADAVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp TCCBH--------THHHHHHHCHSHT--TSEE--EEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred CcccC--------hHHHHHHHhhCcc--ceeE--EeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence 33221 1112333333332 2333 389999999999999999999999999999999998877654
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-21 Score=162.96 Aligned_cols=175 Identities=27% Similarity=0.387 Sum_probs=132.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc---C-------cHHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI---G-------HFVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~---~-------~~~~a~~~~~aGa 115 (310)
.+|++++.+||.+| |.++ ++.++.+++.+++|++.-... + ..++++.+.++|+
T Consensus 3 ~mA~Aa~~gGA~gi----------R~~~-------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGa 65 (192)
T PF04131_consen 3 RMAKAAEEGGAVGI----------RANG-------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGA 65 (192)
T ss_dssp HHHHHHHHCT-SEE----------EEES-------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-
T ss_pred HHHHHHHHCCceEE----------EcCC-------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCC
Confidence 57899999999997 6655 899999999999999873211 1 2588999999999
Q ss_pred CEE-E-eCCC---CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEe
Q 021609 116 DYV-D-ESEV---LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 116 d~V-i-~~~~---~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
|.| + .+.. .+..++.+.+++++ ..+++||.|.+|+..+.++|+|+|++...+||++.
T Consensus 66 dIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t---------------- 127 (192)
T PF04131_consen 66 DIIALDATDRPRPETLEELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYT---------------- 127 (192)
T ss_dssp SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTS----------------
T ss_pred CEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCC----------------
Confidence 999 3 4433 34556666666543 89999999999999999999999998877777641
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
+...+++++++++.+. ++||+ ++|+|++|+++.+++++||++|+|||+|++ |...+++|.+
T Consensus 128 -------------~~~~pD~~lv~~l~~~-~~pvI--aEGri~tpe~a~~al~~GA~aVVVGsAITr---P~~It~~F~~ 188 (192)
T PF04131_consen 128 -------------KGDGPDFELVRELVQA-DVPVI--AEGRIHTPEQAAKALELGAHAVVVGSAITR---PQEITKRFVD 188 (192)
T ss_dssp -------------TTSSHHHHHHHHHHHT-TSEEE--EESS--SHHHHHHHHHTT-SEEEE-HHHH----HHHHHHHHHH
T ss_pred -------------CCCCCCHHHHHHHHhC-CCcEe--ecCCCCCHHHHHHHHhcCCeEEEECcccCC---HHHHHHHHHH
Confidence 1235679999999885 89988 899999999999999999999999999997 9999999998
Q ss_pred HHhc
Q 021609 271 AVTH 274 (310)
Q Consensus 271 ~i~~ 274 (310)
++++
T Consensus 189 ai~~ 192 (192)
T PF04131_consen 189 AIKK 192 (192)
T ss_dssp HCHH
T ss_pred HHhC
Confidence 8763
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-20 Score=165.30 Aligned_cols=188 Identities=21% Similarity=0.304 Sum_probs=147.0
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|.+....++ ++|+.|+++||++|..+ .+...++|+ ++.++.+++.+++||++++++...++++.+.++|
T Consensus 24 ~~~~~~~~~~~~~A~~~~~~GA~~l~v~----~~~~~~~g~-----~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~G 94 (217)
T cd00331 24 KGLIREDFDPVEIAKAYEKAGAAAISVL----TEPKYFQGS-----LEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAG 94 (217)
T ss_pred CCcCCCCCCHHHHHHHHHHcCCCEEEEE----eCccccCCC-----HHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcC
Confidence 3566666677 79999999999998222 122344444 7899999998999999998766656899999999
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||+|+ ...++++.++.++++. ...++..++++++.+++.++.+.|++++.++++..+
T Consensus 95 ad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~~~~~--------------------- 153 (217)
T cd00331 95 ADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINNRDLK--------------------- 153 (217)
T ss_pred CCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeCCCcc---------------------
Confidence 99996 5555666666666655 446888899999999999999999999998754321
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQA 267 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~ 267 (310)
...++++.+.++++. .++|++ ++|||++++|+.+++++|||||+|||+|+++.||...+++
T Consensus 154 ------------~~~~~~~~~~~l~~~~~~~~pvi--a~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~ 216 (217)
T cd00331 154 ------------TFEVDLNTTERLAPLIPKDVILV--SESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALRE 216 (217)
T ss_pred ------------ccCcCHHHHHHHHHhCCCCCEEE--EEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHh
Confidence 112345667777665 468998 7899999999999999999999999999999999877664
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=187.13 Aligned_cols=197 Identities=24% Similarity=0.300 Sum_probs=159.1
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|.|....++ ++|+.|+++||++|+.| ++.+.|+|+ ++.++++++.+++||+.||++-+..++..+..+|
T Consensus 63 ~G~i~~~~d~~~~a~~y~~~GA~aiSVl----Te~~~F~Gs-----~~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~G 133 (695)
T PRK13802 63 KGHLSDIPDPAALAREYEQGGASAISVL----TEGRRFLGS-----LDDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHG 133 (695)
T ss_pred CCcCCCCCCHHHHHHHHHHcCCcEEEEe----cCcCcCCCC-----HHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcC
Confidence 4777777677 78999999999999777 677888888 8999999999999999999988655666677799
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||.|+ +...++..++.++++. +..++.+++.+||.+|+.++.++|+++|+++++. +.
T Consensus 134 ADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRd---------------------L~ 192 (695)
T PRK13802 134 ADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARN---------------------LK 192 (695)
T ss_pred CCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCC---------------------Cc
Confidence 99996 7777777778777766 6789999999999999999999999999999863 22
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
++..| .....++.+.+.+ ++.+| +++||++++|+..+..+|+|+|+||++||+++||....++|..+-
T Consensus 193 tf~vd--------~~~t~~L~~~ip~--~~~~V--sESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~~ 260 (695)
T PRK13802 193 DLKVD--------VNKYNELAADLPD--DVIKV--AESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKAG 260 (695)
T ss_pred cceeC--------HHHHHHHHhhCCC--CcEEE--EcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhcc
Confidence 22211 1122334443432 33344 899999999999999999999999999999999999988887665
Q ss_pred hc
Q 021609 273 TH 274 (310)
Q Consensus 273 ~~ 274 (310)
.+
T Consensus 261 ~~ 262 (695)
T PRK13802 261 AR 262 (695)
T ss_pred cc
Confidence 44
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-20 Score=156.85 Aligned_cols=195 Identities=28% Similarity=0.408 Sum_probs=157.6
Q ss_pred chhhhhhCcccccCCCH------------HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCccee
Q 021609 29 GLAQMLRGGVIMDVVTP------------EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVM 96 (310)
Q Consensus 29 ~~~~~~~~g~i~~~~~~------------~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~ 96 (310)
.+..++++|+|++++-. .+|++++++||.+| |.++ .+.++.+++.+++|++
T Consensus 8 ~~~~~~~gglIVSCQal~~~pl~~~~iv~~mA~Aa~~gGAvgi----------R~~g-------v~dIkai~~~v~vPII 70 (229)
T COG3010 8 KLKEQLKGGLIVSCQALPGEPLDSPEIVAAMALAAEQGGAVGI----------RIEG-------VEDIKAIRAVVDVPII 70 (229)
T ss_pred HHHHHhcCCeEEEeecCCCCCCcchhHHHHHHHHHHhCCcceE----------eecc-------hhhHHHHHhhCCCCeE
Confidence 44556788999999743 37999999999987 6554 6899999999999998
Q ss_pred ec---c------ccC-cHHHHHHHHHcCCCEEE--eCCCCCch-hHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCE
Q 021609 97 AK---A------RIG-HFVEAQILEAIGIDYVD--ESEVLTPA-DEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAM 162 (310)
Q Consensus 97 vk---~------~~~-~~~~a~~~~~aGad~Vi--~~~~~~~~-~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~ 162 (310)
.- + ++. +.++++.+.++|++.|- .+...-|. ++.++++. +.+++..++||.|++|...+.++|+|+
T Consensus 71 GIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~ 150 (229)
T COG3010 71 GIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDI 150 (229)
T ss_pred EEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcE
Confidence 63 2 222 25889999999999993 44433333 55566655 668899999999999999999999999
Q ss_pred EEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH
Q 021609 163 IRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 163 V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l 242 (310)
|++.-.+||++.. +...+++.+++++.+ .+++|| |+|.++||+++.+++
T Consensus 151 IGTTLsGYT~~~~----------------------------~~~~pDf~lvk~l~~-~~~~vI--AEGr~~tP~~Ak~a~ 199 (229)
T COG3010 151 IGTTLSGYTGYTE----------------------------KPTEPDFQLVKQLSD-AGCRVI--AEGRYNTPEQAKKAI 199 (229)
T ss_pred EecccccccCCCC----------------------------CCCCCcHHHHHHHHh-CCCeEE--eeCCCCCHHHHHHHH
Confidence 9977667766310 123677999999988 689998 899999999999999
Q ss_pred HcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 243 QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 243 ~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
+.||++|+||++|++ |...+++|.+++++
T Consensus 200 ~~Ga~aVvVGsAITR---p~~It~~F~~~ik~ 228 (229)
T COG3010 200 EIGADAVVVGSAITR---PEEITQWFVDAIKS 228 (229)
T ss_pred HhCCeEEEECcccCC---HHHHHHHHHHHHhc
Confidence 999999999999997 99999999998875
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-19 Score=172.09 Aligned_cols=218 Identities=21% Similarity=0.227 Sum_probs=166.5
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|.+....++ ++|+.| +.||.+++.| ++.+.|+|+ ++.++++++.+++|++.||++-+..++..+..+|
T Consensus 63 ~G~i~~~~d~~~~a~~y-~~gA~aiSVl----Te~~~F~Gs-----~~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~G 132 (454)
T PRK09427 63 KGLIRDDFDPAEIARVY-KHYASAISVL----TDEKYFQGS-----FDFLPIVRAIVTQPILCKDFIIDPYQIYLARYYG 132 (454)
T ss_pred CCccCCCCCHHHHHHHH-HcCCeEEEEe----cCcCcCCCC-----HHHHHHHHHhCCCCEEeccccCCHHHHHHHHHcC
Confidence 4666666676 789999 8889999777 677888888 8999999999999999999988655666677799
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||.|+ +...+++.++.++++. +..|+..++++||.+|+.++.++|+++|+++++.. .
T Consensus 133 ADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGiNnRdL---------------------~ 191 (454)
T PRK09427 133 ADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGINNRNL---------------------R 191 (454)
T ss_pred CCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEEeCCCC---------------------c
Confidence 99996 7777777777777766 67899999999999999999999999999998632 2
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
++..| .....++.+.+.+ ++.++ +++||+|++|+..+.. |+|||+||++||+++||....++|....
T Consensus 192 t~~vd--------~~~~~~l~~~ip~--~~~~v--seSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~~~~ 258 (454)
T PRK09427 192 DLSID--------LNRTRELAPLIPA--DVIVI--SESGIYTHAQVRELSP-FANGFLIGSSLMAEDDLELAVRKLILGE 258 (454)
T ss_pred cceEC--------HHHHHHHHhhCCC--CcEEE--EeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCHHHHHHHHhccc
Confidence 22211 1122334444432 33344 8999999999999754 7999999999999999999888886653
Q ss_pred hccC--ChhhhhhhhhhcccchhcccC
Q 021609 273 THYS--DPEVLAEVSCGLGEAMVGLNL 297 (310)
Q Consensus 273 ~~~~--~~~~~~~~~~~~~~~~~~~~~ 297 (310)
-+-+ ....-.......|-.+.|+-.
T Consensus 259 vKICGit~~eda~~a~~~GaD~lGfIf 285 (454)
T PRK09427 259 NKVCGLTRPQDAKAAYDAGAVYGGLIF 285 (454)
T ss_pred cccCCCCCHHHHHHHHhCCCCEEeeEe
Confidence 3322 222233455667888888853
|
|
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.9e-18 Score=147.31 Aligned_cols=183 Identities=21% Similarity=0.298 Sum_probs=142.8
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCC--CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVAR--MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~--~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
.+.++.+.++|++.+ +| |.++.+.. ....+.++.+++.+++|++++++ .+.+.+.|||+|. ++
T Consensus 24 ~~~ve~al~~Gv~~v-Ql-------R~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~------~dlA~~~~AdGVHlGq 89 (211)
T COG0352 24 LEWVEAALKGGVTAV-QL-------REKDLSDEEYLALAEKLRALCQKYGVPLIINDR------VDLALAVGADGVHLGQ 89 (211)
T ss_pred HHHHHHHHhCCCeEE-EE-------ecCCCChHHHHHHHHHHHHHHHHhCCeEEecCc------HHHHHhCCCCEEEcCC
Confidence 678889999999976 77 33332221 11234666677888999998875 4467799999996 77
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHH
Q 021609 122 EVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~ 201 (310)
++++..+.++.+ +.++.+++++|+.+|+.++.+.|+|||.+.. +++|.++++
T Consensus 90 ~D~~~~~ar~~~---~~~~iIG~S~h~~eea~~A~~~g~DYv~~Gp----------------------ifpT~tK~~--- 141 (211)
T COG0352 90 DDMPLAEARELL---GPGLIIGLSTHDLEEALEAEELGADYVGLGP----------------------IFPTSTKPD--- 141 (211)
T ss_pred cccchHHHHHhc---CCCCEEEeecCCHHHHHHHHhcCCCEEEECC----------------------cCCCCCCCC---
Confidence 777777776664 4678999999999999999999999999753 233333211
Q ss_pred hhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 202 FAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 202 ~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
.....++.++++++..++|+++| ||| +++++.+++++|++||.|-|+|++++||...++++.+.++.+
T Consensus 142 ---~~~~G~~~l~~~~~~~~iP~vAI--GGi-~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~~ 209 (211)
T COG0352 142 ---APPLGLEGLREIRELVNIPVVAI--GGI-NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALEDE 209 (211)
T ss_pred ---CCccCHHHHHHHHHhCCCCEEEE--cCC-CHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHhh
Confidence 01223778888888878999966 999 799999999999999999999999999999999999988754
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=147.61 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=159.6
Q ss_pred eeecchhhhhhCcccccCC----CH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGVIMDVV----TP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~~~----~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
-++.|.+++|.+|++.+-+ +| ++|+.|.+.||.++ ++|+ .++.|. ..+.+.++++.+.+++||.+
T Consensus 9 Dl~~G~~VRL~qGd~~~~~~y~~~P~~~a~~~~~~Ga~~lHlVDLd------gA~~g~--~~n~~~i~~i~~~~~~~vQv 80 (241)
T COG0106 9 DLKDGKVVRLVQGDYGKETVYSDDPLEVAKKWSDQGAEWLHLVDLD------GAKAGG--PRNLEAIKEILEATDVPVQV 80 (241)
T ss_pred EeeCCEEEEeecccCCcceEecCCHHHHHHHHHHcCCcEEEEeecc------ccccCC--cccHHHHHHHHHhCCCCEEe
Confidence 4667889999999987743 44 79999999999998 7886 233222 35689999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCC-chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCC-Ccch
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLT-PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG-TGNI 174 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~-~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~-~~~~ 174 (310)
...+...+.++.++++|++.|+ .+.+.. |.-+.+++++++-.+.+.+|++.. .+.++||.. ++
T Consensus 81 GGGIRs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g------------~vav~GW~e~s~-- 146 (241)
T COG0106 81 GGGIRSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDG------------KVAVSGWQEDSG-- 146 (241)
T ss_pred eCCcCCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCC------------cccccccccccc--
Confidence 9888888999999999999996 666655 445566666676347788888665 346788854 33
Q ss_pred HHHHHHHHhhccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-CCCEEE
Q 021609 175 IEAVRHVRSVMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVF 250 (310)
Q Consensus 175 ~~~~~~~r~~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~ 250 (310)
.+..+..+++... .-+++..++|+++ .++++++++++.+.+++|++ ++|||+|.+|+..+..+ |++|++
T Consensus 147 ~~~~~l~~~~~~~g~~~ii~TdI~~DGtl-----~G~n~~l~~~l~~~~~ipvi--aSGGv~s~~Di~~l~~~~G~~GvI 219 (241)
T COG0106 147 VELEELAKRLEEVGLAHILYTDISRDGTL-----SGPNVDLVKELAEAVDIPVI--ASGGVSSLDDIKALKELSGVEGVI 219 (241)
T ss_pred CCHHHHHHHHHhcCCCeEEEEeccccccc-----CCCCHHHHHHHHHHhCcCEE--EecCcCCHHHHHHHHhcCCCcEEE
Confidence 2344444444333 5566777877764 46779999999999999998 89999999999999999 899999
Q ss_pred EccccccC
Q 021609 251 VGSGVFKS 258 (310)
Q Consensus 251 VGsai~~a 258 (310)
+|+||+..
T Consensus 220 vG~ALy~g 227 (241)
T COG0106 220 VGRALYEG 227 (241)
T ss_pred EehHHhcC
Confidence 99999974
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-16 Score=139.59 Aligned_cols=177 Identities=23% Similarity=0.305 Sum_probs=129.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCccee---eccc------cC-cHHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVM---AKAR------IG-HFVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~---vk~~------~~-~~~~a~~~~~aGa 115 (310)
++|+++.++|+.++ .+ . .++.++++++.+++|++ .++. ++ ..++++.+.++||
T Consensus 27 ~~a~a~~~~G~~~~-~~-------~---------~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGa 89 (221)
T PRK01130 27 AMALAAVQGGAVGI-RA-------N---------GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGA 89 (221)
T ss_pred HHHHHHHHCCCeEE-Ec-------C---------CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCCHHHHHHHHHcCC
Confidence 67999999999887 22 1 17899999988999997 3331 11 3467899999999
Q ss_pred CEEEe--CCC-----CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccce
Q 021609 116 DYVDE--SEV-----LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 116 d~Vi~--~~~-----~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
|.|+. +.. .+..++.+.++++ .++++++++++.+++.++.+.|+|++.++..+.++.
T Consensus 90 d~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~--------------- 153 (221)
T PRK01130 90 DIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEE--------------- 153 (221)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecC---------------
Confidence 98752 211 2334555665544 789999999999999999999999998754322221
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.. . .....++.++++++..++|++ +.|||++++|+.+++++|||+|++||+|++.++ ..+.|
T Consensus 154 ---~~-~---------~~~~~~~~i~~i~~~~~iPvi--a~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~---~~~~~ 215 (221)
T PRK01130 154 ---TK-K---------PEEPDFALLKELLKAVGCPVI--AEGRINTPEQAKKALELGAHAVVVGGAITRPEE---ITKWF 215 (221)
T ss_pred ---CC-C---------CCCcCHHHHHHHHHhCCCCEE--EECCCCCHHHHHHHHHCCCCEEEEchHhcCCHH---HHHHH
Confidence 00 0 123346788888887789998 789999999999999999999999999997444 44556
Q ss_pred HHHHh
Q 021609 269 VRAVT 273 (310)
Q Consensus 269 ~~~i~ 273 (310)
.+.++
T Consensus 216 ~~~~~ 220 (221)
T PRK01130 216 VDALK 220 (221)
T ss_pred HHHhh
Confidence 55543
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-16 Score=139.06 Aligned_cols=205 Identities=17% Similarity=0.204 Sum_probs=148.9
Q ss_pred eeecchhhhhhCccccc----CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGVIMD----VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~----~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
-++.|.++++.+|.... ..+| ++|+.|.+.||+++ ++||.. ..| ...+.+.++++.+.+ .|+.+
T Consensus 8 Dl~~Gk~Vrl~~G~~~~~~~~~~dP~~~A~~~~~~ga~~lhivDLd~a------~~g--~~~n~~~i~~i~~~~-~~v~v 78 (241)
T PRK14114 8 DLFRGKVARMVKGKKENTIFYEKDPAELVEKLIEEGFTLIHVVDLSKA------IEN--SVENLPVLEKLSEFA-EHIQI 78 (241)
T ss_pred EEECCEEEEeeccccCcceEECCCHHHHHHHHHHCCCCEEEEEECCCc------ccC--CcchHHHHHHHHhhc-CcEEE
Confidence 35567777777776433 3577 78999999999998 677522 111 234578999998887 79999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCC-CcchH
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG-TGNII 175 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~-~~~~~ 175 (310)
...+...++++.+.++||+.|+ ++..++.+++.+.+.+++..+.+.+|++. | .+.++||.. ++ .
T Consensus 79 GGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~----------g--~v~~~gw~~~~~--~ 144 (241)
T PRK14114 79 GGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRG----------G--KVAFKGWLAEEE--I 144 (241)
T ss_pred ecCCCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccC----------C--EEeeCCCeecCC--C
Confidence 8888788999999999999985 77777777666666544323444455433 2 466778743 22 1
Q ss_pred HHHHHHHhhccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-----C-C
Q 021609 176 EAVRHVRSVMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-----G-C 246 (310)
Q Consensus 176 ~~~~~~r~~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-----G-a 246 (310)
+..++++++... .-+++++++|++ ..++++++++++++..++||+ ++|||++.+|+.++..+ | +
T Consensus 145 ~~~e~~~~~~~~g~~~ii~tdI~rdGt-----~~G~d~el~~~l~~~~~~pvi--asGGv~s~~Dl~~l~~~~~~~~g~v 217 (241)
T PRK14114 145 DPVSLLKRLKEYGLEEIVHTEIEKDGT-----LQEHDFSLTRKIAIEAEVKVF--AAGGISSENSLKTAQRVHRETNGLL 217 (241)
T ss_pred CHHHHHHHHHhcCCCEEEEEeechhhc-----CCCcCHHHHHHHHHHCCCCEE--EECCCCCHHHHHHHHhcccccCCcE
Confidence 244554444332 556677787775 257789999999988899998 89999999999999886 6 9
Q ss_pred CEEEEccccccCC
Q 021609 247 DGVFVGSGVFKSG 259 (310)
Q Consensus 247 dgV~VGsai~~a~ 259 (310)
+|+++|++|+.-.
T Consensus 218 ~gvivg~Al~~g~ 230 (241)
T PRK14114 218 KGVIVGRAFLEGI 230 (241)
T ss_pred EEEEEehHHHCCC
Confidence 9999999999743
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=136.97 Aligned_cols=210 Identities=22% Similarity=0.265 Sum_probs=155.6
Q ss_pred hhhhhhCcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHH
Q 021609 30 LAQMLRGGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQ 108 (310)
Q Consensus 30 ~~~~~~~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~ 108 (310)
+++..++-...+..+| ++|+.|.+.|||.++-|+ +.+.. ..+....+.++++.+.+.+|+.+...+...++++
T Consensus 17 VVKGv~F~~lrd~GDpVelA~~Y~e~GADElvFlD-----ItAs~-~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~ 90 (256)
T COG0107 17 VVKGVNFKNLRDAGDPVELAKRYNEEGADELVFLD-----ITASS-EGRETMLDVVERVAEQVFIPLTVGGGIRSVEDAR 90 (256)
T ss_pred EEecccccchhhcCChHHHHHHHHHcCCCeEEEEe-----ccccc-ccchhHHHHHHHHHhhceeeeEecCCcCCHHHHH
Confidence 3344444456666777 899999999999997775 22211 1123447899999999999999999888889999
Q ss_pred HHHHcCCCEE-EeCCCCCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHH--HhCCCEEEEcCC-CCCcchHHHHHHHHh
Q 021609 109 ILEAIGIDYV-DESEVLTPADEENHINKHNFR-IPFVCGCRNLGEALRRI--REGAAMIRTKGE-AGTGNIIEAVRHVRS 183 (310)
Q Consensus 109 ~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~--~~Gad~V~v~g~-~~~~~~~~~~~~~r~ 183 (310)
.++.+|||.| +.+.++..++++..+... ++ +++.+++. +++-. +.+-..|.++|. ..++ .++++|.++
T Consensus 91 ~ll~aGADKVSINsaAv~~p~lI~~~a~~-FGsQciVvaID----akr~~~g~~~~~~v~~~gGr~~t~--~d~~~Wa~~ 163 (256)
T COG0107 91 KLLRAGADKVSINSAAVKDPELITEAADR-FGSQCIVVAID----AKRVPDGENGWYEVFTHGGREDTG--LDAVEWAKE 163 (256)
T ss_pred HHHHcCCCeeeeChhHhcChHHHHHHHHH-hCCceEEEEEE----eeeccCCCCCcEEEEecCCCcCCC--cCHHHHHHH
Confidence 9999999999 577778777787766552 34 44444431 22211 222345777754 3343 468899988
Q ss_pred hccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCC
Q 021609 184 VMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSG 259 (310)
Q Consensus 184 ~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~ 259 (310)
...+ .-+++.++.|++ ..+.++++++.+++.+++||| ||||..+++|+.+++..| ||+++.+|-|...+
T Consensus 164 ~e~~GAGEIlLtsmD~DGt-----k~GyDl~l~~~v~~~v~iPvI--ASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~ 236 (256)
T COG0107 164 VEELGAGEILLTSMDRDGT-----KAGYDLELTRAVREAVNIPVI--ASGGAGKPEHFVEAFTEGKADAALAASIFHFGE 236 (256)
T ss_pred HHHcCCceEEEeeeccccc-----ccCcCHHHHHHHHHhCCCCEE--ecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCc
Confidence 6665 778888888765 357789999999999999998 999999999999999666 99999999888743
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=136.92 Aligned_cols=206 Identities=15% Similarity=0.157 Sum_probs=147.9
Q ss_pred ceeecchhhhhhCcccccCC----CH-HHHHHHHH-cCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcce
Q 021609 24 FSVKVGLAQMLRGGVIMDVV----TP-EQARVAEE-AGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPV 95 (310)
Q Consensus 24 ~~~~~~~~~~~~~g~i~~~~----~~-~~A~~~~~-~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv 95 (310)
..++.|.++++++|.....+ +| ++|+.|.+ .||+++ +||+... .| ...+.+.++++.+.+++|+
T Consensus 8 IDl~~G~~Vr~~~G~~~~~~~~~~dp~~~a~~~~~~~Ga~~l~ivDLd~a~------~~--~~~n~~~I~~i~~~~~~pi 79 (234)
T PRK13587 8 IDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAK------AQ--HAREFDYIKSLRRLTTKDI 79 (234)
T ss_pred EEccCCEEEEcCcccCCCceEeCCCHHHHHHHHHhccCCCEEEEEECcccc------cC--CcchHHHHHHHHhhcCCeE
Confidence 34667888888888766543 65 89999998 799998 6775221 11 1345889999999999999
Q ss_pred eeccccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcc
Q 021609 96 MAKARIGHFVEAQILEAIGIDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN 173 (310)
Q Consensus 96 ~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~ 173 (310)
++...+...++++.+.++||+.|+ .+..++.+++.+.+.+ ++-.+.+.+|.... .+.+++|.....
T Consensus 80 ~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g------------~v~~~gw~~~~~ 147 (234)
T PRK13587 80 EVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGE------------DIKVNGWEEDTE 147 (234)
T ss_pred EEcCCcCCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCC------------EEEecCCcccCC
Confidence 999888888999999999999996 6666666655444444 43234445554322 456777743111
Q ss_pred hHHHHHHHHhhccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 174 IIEAVRHVRSVMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 174 ~~~~~~~~r~~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
.+..++++++... .-+++..++|++ ..++++++++++.+..++|++ ++|||++++|+.+++++|+++|+
T Consensus 148 -~~~~~~~~~~~~~g~~~ii~tdi~~dGt-----~~G~~~~li~~l~~~~~ipvi--~~GGi~s~edi~~l~~~G~~~vi 219 (234)
T PRK13587 148 -LNLFSFVRQLSDIPLGGIIYTDIAKDGK-----MSGPNFELTGQLVKATTIPVI--ASGGIRHQQDIQRLASLNVHAAI 219 (234)
T ss_pred -CCHHHHHHHHHHcCCCEEEEecccCcCC-----CCccCHHHHHHHHHhCCCCEE--EeCCCCCHHHHHHHHHcCCCEEE
Confidence 1234444443222 345555565554 246778999999887889998 79999999999999999999999
Q ss_pred Ecccccc
Q 021609 251 VGSGVFK 257 (310)
Q Consensus 251 VGsai~~ 257 (310)
+|+++++
T Consensus 220 vG~a~~~ 226 (234)
T PRK13587 220 IGKAAHQ 226 (234)
T ss_pred EhHHHHh
Confidence 9999996
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=138.01 Aligned_cols=203 Identities=17% Similarity=0.194 Sum_probs=151.2
Q ss_pred eeecchhhhhhCccccc-----------C------CCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHH
Q 021609 25 SVKVGLAQMLRGGVIMD-----------V------VTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLI 84 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~-----------~------~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i 84 (310)
-++.|.+++|.+|.+.+ . .+| ++|+.|.+.||+++ ++|++ | ...+.+.+
T Consensus 8 Dl~~Gk~VrL~~G~~~~~~~~~~~~~~~~~~y~~~~dP~~~A~~~~~~Ga~~lHvVDLdg---------g--~~~n~~~i 76 (262)
T PLN02446 8 DIHKGKVKQIVGSTLKDSKDGSEDGSELVTNFESDKSAAEFAEMYKRDGLTGGHVIMLGA---------D--DASLAAAL 76 (262)
T ss_pred EeeCCEEEEeeCccccccccccccCCCceEEeCCCCCHHHHHHHHHHCCCCEEEEEECCC---------C--CcccHHHH
Confidence 36678888999998855 2 456 89999999999987 77742 1 23457899
Q ss_pred HHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCCCCC-----chhHHHHHHhcCCC-CcEEEecCCHHHHHHHHH
Q 021609 85 KEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVLT-----PADEENHINKHNFR-IPFVCGCRNLGEALRRIR 157 (310)
Q Consensus 85 ~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~-----~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~ 157 (310)
+++++ +++||.+...+.. ++++.++++||+.|+ ++.+++ |.-+.+++++++.+ +.+.+|+.. .
T Consensus 77 ~~i~~-~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~--------~ 146 (262)
T PLN02446 77 EALRA-YPGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK--------K 146 (262)
T ss_pred HHHHh-CCCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe--------c
Confidence 99998 8899999887764 999999999999996 665554 44445555556555 666677641 1
Q ss_pred hCCCEEEEcCCCC-CcchHHHHHHHHhhc---cceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCC
Q 021609 158 EGAAMIRTKGEAG-TGNIIEAVRHVRSVM---GDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVA 233 (310)
Q Consensus 158 ~Gad~V~v~g~~~-~~~~~~~~~~~r~~~---~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~ 233 (310)
.|-..|.++||.. ++ .+..+++.+.. ...-+++.+++|+++ .++++++++++.+.+++||+ |+|||+
T Consensus 147 ~g~~~Va~~GW~~~t~--~~~~e~~~~~~~~g~~eii~TdI~rDGtl-----~G~d~el~~~l~~~~~ipVI--ASGGv~ 217 (262)
T PLN02446 147 DGRYYVVTDRWQKFSD--LAVDEETLEFLAAYCDEFLVHGVDVEGKR-----LGIDEELVALLGEHSPIPVT--YAGGVR 217 (262)
T ss_pred CCCEEEEECCCcccCC--CCHHHHHHHHHHhCCCEEEEEEEcCCCcc-----cCCCHHHHHHHHhhCCCCEE--EECCCC
Confidence 2334788999954 33 22444433322 236677778888763 57789999999998999998 899999
Q ss_pred CHHHHHHHHHc--CCCEEEEcccc--cc
Q 021609 234 TPADAAMMMQL--GCDGVFVGSGV--FK 257 (310)
Q Consensus 234 t~~d~~~~l~~--GadgV~VGsai--~~ 257 (310)
+.+|+.++..+ |..++++|+|| |.
T Consensus 218 sleDi~~L~~~g~g~~gvIvGkAl~~y~ 245 (262)
T PLN02446 218 SLDDLERVKVAGGGRVDVTVGSALDIFG 245 (262)
T ss_pred CHHHHHHHHHcCCCCEEEEEEeeHHHhC
Confidence 99999999987 58999999999 75
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-15 Score=135.23 Aligned_cols=169 Identities=24% Similarity=0.344 Sum_probs=125.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee---ccc------cC-cHHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA---KAR------IG-HFVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v---k~~------~~-~~~~a~~~~~aGa 115 (310)
++++++.++|+..+ .. .+++.++.+++.+++|++. +++ ++ +.++++.+.++|+
T Consensus 31 ~~a~~~~~~G~~~~-~~----------------~~~~~~~~i~~~~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGa 93 (219)
T cd04729 31 AMALAAVQGGAVGI-RA----------------NGVEDIRAIRARVDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGA 93 (219)
T ss_pred HHHHHHHHCCCeEE-Ec----------------CCHHHHHHHHHhCCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCC
Confidence 57889999999875 21 1268889888888999974 332 12 2357899999999
Q ss_pred CEEEe--CC-----CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccce
Q 021609 116 DYVDE--SE-----VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 116 d~Vi~--~~-----~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
|.|+. .. .....++.+.+++.+ +++++++++|.+++.++.+.|+|++.++..+.++.
T Consensus 94 d~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~--------------- 157 (219)
T cd04729 94 DIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEE--------------- 157 (219)
T ss_pred CEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHHcCCCEEEccCcccccc---------------
Confidence 98852 11 123455666665555 68999999999999999999999997643322211
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
... .....++.++.+++..++|++ +.|||++++|+.+++++|||+|++||+|++.+||.
T Consensus 158 ----~~~---------~~~~~~~~l~~i~~~~~ipvi--a~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~ 216 (219)
T cd04729 158 ----TAK---------TEDPDFELLKELRKALGIPVI--AEGRINSPEQAAKALELGADAVVVGSAITRPEHIT 216 (219)
T ss_pred ----ccC---------CCCCCHHHHHHHHHhcCCCEE--EeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHh
Confidence 000 123457788888887789998 78999999999999999999999999999987775
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-16 Score=134.19 Aligned_cols=190 Identities=23% Similarity=0.280 Sum_probs=141.9
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh--cCcc---eeeccccCcHHHHHH
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS--VTIP---VMAKARIGHFVEAQI 109 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~--~~iP---v~vk~~~~~~~~a~~ 109 (310)
+|++.--.++ ++|.+|+++||..++.| ++.++|.|+ ++.+..+++. +..| ++.|+++- +..|+
T Consensus 84 kG~ik~d~~~ae~A~~Yak~GAs~iSVL----Te~k~FkGs-----ledL~~irk~~~~k~p~~~lL~KeFiv--d~~QI 152 (289)
T KOG4201|consen 84 KGIIKLDANAAEQALAYAKGGASCISVL----TEPKWFKGS-----LEDLVAIRKIAGVKCPPKCLLRKEFIV--DPYQI 152 (289)
T ss_pred CCccccccCHHHHHHHHHhcCceeeeee----cCchhhccc-----HHHHHHHHHHhcCcCChHhHhHHHHcc--CHHHH
Confidence 3444444444 89999999999999777 678999988 7788877754 3566 77888865 45555
Q ss_pred HHH--cCCCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhc
Q 021609 110 LEA--IGIDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVM 185 (310)
Q Consensus 110 ~~~--aGad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~ 185 (310)
+++ .|||.|+ +...++..++..+++- ...++...+.+|+.+|..++.+.|+..|+++++.
T Consensus 153 ~~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~raleiGakvvGvNNRn---------------- 216 (289)
T KOG4201|consen 153 YEARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEIGAKVVGVNNRN---------------- 216 (289)
T ss_pred HHHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHhCcEEEeecCCc----------------
Confidence 555 9999996 6665666666555544 4578999999999999999999999999999863
Q ss_pred cceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 021609 186 GDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 186 ~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a 265 (310)
+.++.- +......++..+++ .|++++..||.|++|+......|..+|+||.+++++.||.+.+
T Consensus 217 -----L~sFeV--------DlstTskL~E~i~k----Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i 279 (289)
T KOG4201|consen 217 -----LHSFEV--------DLSTTSKLLEGIPK----DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFI 279 (289)
T ss_pred -----cceeee--------chhhHHHHHhhCcc----ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHH
Confidence 222221 12222334443332 3555589999999999999999999999999999999999887
Q ss_pred HHHH
Q 021609 266 QAIV 269 (310)
Q Consensus 266 ~~l~ 269 (310)
+.+.
T Consensus 280 ~eL~ 283 (289)
T KOG4201|consen 280 HELF 283 (289)
T ss_pred HHHh
Confidence 7664
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=135.89 Aligned_cols=198 Identities=21% Similarity=0.240 Sum_probs=139.9
Q ss_pred ceeecchhhhhhCccccc---CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 24 FSVKVGLAQMLRGGVIMD---VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 24 ~~~~~~~~~~~~~g~i~~---~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
+-++.|.++++.+|.... ..+| ++|+.|.+.|++++ ++|+.. .+ ...+.+.++++.+.+++|+++
T Consensus 10 idl~~G~~V~~~~g~~~~~~~~~dp~~~a~~~~~~g~~~l~ivDLd~~------~g---~~~n~~~i~~i~~~~~~pv~v 80 (241)
T PRK14024 10 VDVVDGQAVRLVQGEAGSETSYGSPLDAALAWQRDGAEWIHLVDLDAA------FG---RGSNRELLAEVVGKLDVKVEL 80 (241)
T ss_pred EEeECCEEEEeecccccCceECCCHHHHHHHHHHCCCCEEEEEecccc------CC---CCccHHHHHHHHHHcCCCEEE
Confidence 345667777776665222 2366 89999999999998 677522 11 234679999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCCchhH-HHHHHhcCCCCcEEEecC--------------C-HHHHHHHHHhCC
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLTPADE-ENHINKHNFRIPFVCGCR--------------N-LGEALRRIREGA 160 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~-~~~i~~~~~~i~~~v~~~--------------t-~~ea~~~~~~Ga 160 (310)
...+...++++.+.++||+.+. ++..+..+++ .++++..+-.+.+.+++. + .+-+.++.+.|+
T Consensus 81 gGGirs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~ 160 (241)
T PRK14024 81 SGGIRDDESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGC 160 (241)
T ss_pred cCCCCCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCC
Confidence 9888888999999999999985 6666665555 444433322233333331 1 223444556777
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
+.+.+|+... +++ ..++++++++++++..++||+ ++|||+|++|+.+
T Consensus 161 ~~iiv~~~~~--------------------------~g~-----~~G~d~~~i~~i~~~~~ipvi--asGGi~s~~D~~~ 207 (241)
T PRK14024 161 SRYVVTDVTK--------------------------DGT-----LTGPNLELLREVCARTDAPVV--ASGGVSSLDDLRA 207 (241)
T ss_pred CEEEEEeecC--------------------------CCC-----ccCCCHHHHHHHHhhCCCCEE--EeCCCCCHHHHHH
Confidence 7777665432 221 125579999999988899998 8999999999999
Q ss_pred HHH---cCCCEEEEccccccCCCHHH
Q 021609 241 MMQ---LGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 241 ~l~---~GadgV~VGsai~~a~dp~~ 263 (310)
+.. .|+|||++|++++...-+..
T Consensus 208 l~~~~~~GvdgV~igra~~~g~~~~~ 233 (241)
T PRK14024 208 LAELVPLGVEGAIVGKALYAGAFTLP 233 (241)
T ss_pred HhhhccCCccEEEEeHHHHcCCCCHH
Confidence 864 59999999999998654443
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=141.43 Aligned_cols=190 Identities=18% Similarity=0.207 Sum_probs=145.2
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
..|++++|+++ +.|..++++++|.++.++|+-+++.... .......+.++++++.++.|+.++...
T Consensus 6 ~~lgi~~Pii~----apM~~~s~~~la~avs~aGglG~l~~~~----------~~~~~l~~~i~~~~~~t~~pfgvn~~~ 71 (307)
T TIGR03151 6 DLLGIEYPIFQ----GGMAWVATGSLAAAVSNAGGLGIIGAGN----------APPDVVRKEIRKVKELTDKPFGVNIML 71 (307)
T ss_pred HHhCCCCCEEc----CCCCCCCCHHHHHHHHhCCCcceecccc----------CCHHHHHHHHHHHHHhcCCCcEEeeec
Confidence 46899999999 5566799999999999999888644310 000111356777787788999888654
Q ss_pred C---cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 102 G---HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 102 ~---~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
. ..+.++.+.+.|++.|..+.. .+.++.+.+++. ++.+++.+.+.++++++.++|+|+|.++|+..+++.
T Consensus 72 ~~~~~~~~~~~~~~~~v~~v~~~~g-~p~~~i~~lk~~--g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~---- 144 (307)
T TIGR03151 72 LSPFVDELVDLVIEEKVPVVTTGAG-NPGKYIPRLKEN--GVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHI---- 144 (307)
T ss_pred CCCCHHHHHHHHHhCCCCEEEEcCC-CcHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCC----
Confidence 2 234557788999999965433 344566676654 678888999999999999999999999987544431
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
...+++.+++++++..++||+ ++|||.+++++.+++.+|||+|++||.|+-+
T Consensus 145 --------------------------g~~~~~~ll~~v~~~~~iPvi--aaGGI~~~~~~~~al~~GA~gV~iGt~f~~t 196 (307)
T TIGR03151 145 --------------------------GELTTMALVPQVVDAVSIPVI--AAGGIADGRGMAAAFALGAEAVQMGTRFLCA 196 (307)
T ss_pred --------------------------CCCcHHHHHHHHHHHhCCCEE--EECCCCCHHHHHHHHHcCCCEeecchHHhcc
Confidence 113457888889888889998 7899999999999999999999999999986
Q ss_pred CC
Q 021609 259 GD 260 (310)
Q Consensus 259 ~d 260 (310)
..
T Consensus 197 ~E 198 (307)
T TIGR03151 197 KE 198 (307)
T ss_pred cc
Confidence 53
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-15 Score=133.68 Aligned_cols=196 Identities=22% Similarity=0.247 Sum_probs=136.3
Q ss_pred eeecchhhhhhCcc----cccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGV----IMDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~----i~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
.++.|.++++.+|. .....+| +.++.+.+.|++++ .+++... .....+.+.++++++.+++|+++
T Consensus 10 dl~~g~~v~~~~g~~~~~~~~~~~~~e~a~~~~~~G~~~l~i~dl~~~~--------~~~~~~~~~i~~i~~~~~~~l~v 81 (241)
T PRK13585 10 DMKGGKCVQLVQGEPGTETVSYGDPVEVAKRWVDAGAETLHLVDLDGAF--------EGERKNAEAIEKIIEAVGVPVQL 81 (241)
T ss_pred EeECCeEEEeeccccCCceEECCCHHHHHHHHHHcCCCEEEEEechhhh--------cCCcccHHHHHHHHHHcCCcEEE
Confidence 45566666666663 2234566 78999999999998 2332110 01234578999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCCchhH-HHHHHhcCCC-CcEEEecC---------------C-HHHHHHHHHh
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLTPADE-ENHINKHNFR-IPFVCGCR---------------N-LGEALRRIRE 158 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~-~~~i~~~~~~-i~~~v~~~---------------t-~~ea~~~~~~ 158 (310)
...+...++++.+.++|||.|+ .+..++..++ .+..+..+.+ +.+.++++ + .+.++++.+.
T Consensus 82 ~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~ 161 (241)
T PRK13585 82 GGGIRSAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEEL 161 (241)
T ss_pred cCCcCCHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHc
Confidence 8877777889999999999996 5555543344 4444334433 44555543 2 3445556677
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~ 238 (310)
|++.+.++.....+. ..+.+++.++++++..++|++ ++|||++++|+
T Consensus 162 G~~~i~~~~~~~~g~-------------------------------~~g~~~~~i~~i~~~~~iPvi--a~GGI~~~~di 208 (241)
T PRK13585 162 GAGSILFTNVDVEGL-------------------------------LEGVNTEPVKELVDSVDIPVI--ASGGVTTLDDL 208 (241)
T ss_pred CCCEEEEEeecCCCC-------------------------------cCCCCHHHHHHHHHhCCCCEE--EeCCCCCHHHH
Confidence 888776654321110 124568889999888899998 78999999999
Q ss_pred HHHHHcCCCEEEEccccccCCCH
Q 021609 239 AMMMQLGCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 239 ~~~l~~GadgV~VGsai~~a~dp 261 (310)
.++..+||++|++||++++.+.+
T Consensus 209 ~~~~~~Ga~gv~vgsa~~~~~~~ 231 (241)
T PRK13585 209 RALKEAGAAGVVVGSALYKGKFT 231 (241)
T ss_pred HHHHHcCCCEEEEEHHHhcCCcC
Confidence 99989999999999999985443
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-15 Score=133.35 Aligned_cols=203 Identities=17% Similarity=0.208 Sum_probs=149.8
Q ss_pred eeecchhhhhhCcccccC------C-----CH--HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHh
Q 021609 25 SVKVGLAQMLRGGVIMDV------V-----TP--EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQ 89 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~~------~-----~~--~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~ 89 (310)
-+..|.++||.+|.+.+. + +| ++|+.|.+.||+++ ++| |. . +.+.++++.+
T Consensus 8 Dl~~Gk~VrL~qG~~~~~~~~~~~~~~y~~~pp~~~A~~~~~~Ga~~lHvVDL-----------g~--~-n~~~i~~i~~ 73 (253)
T TIGR02129 8 DIHNGKVKQIVGGTLTSKKGSVLKTNFVSDKPSSYYAKLYKDDGVKGCHVIML-----------GP--N-NDDAAKEALH 73 (253)
T ss_pred EeeCCEEEEeeCcCccccccCCcceEEecCCCHHHHHHHHHHcCCCEEEEEEC-----------CC--C-cHHHHHHHHH
Confidence 356788888998887766 4 34 79999999999998 555 11 2 5789999999
Q ss_pred hcCcceeeccccCcHHHHHHHHHcCCCEEE-eCCCCC-----chhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCE
Q 021609 90 SVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVLT-----PADEENHINKHNFR-IPFVCGCRNLGEALRRIREGAAM 162 (310)
Q Consensus 90 ~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~-----~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~ 162 (310)
.+++|+.+...+.. +.++.+.++||+.|+ ++..++ +..+.++.++++.+ +.+.+|++.. +.|-..
T Consensus 74 ~~~~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~-------~~g~~~ 145 (253)
T TIGR02129 74 AYPGGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT-------QDGRWI 145 (253)
T ss_pred hCCCCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc-------CCCcEE
Confidence 99999999888776 899999999999996 554433 44555555556555 6677776410 012347
Q ss_pred EEEcCCCC-Cc-chH-HHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 163 IRTKGEAG-TG-NII-EAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 163 V~v~g~~~-~~-~~~-~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
|.++||.. ++ ++. +..+...+. ...-+++.+++|+++ .++++++++++++.+++||+ |+||+++.+|+.
T Consensus 146 V~~~GW~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl-----~G~dlel~~~l~~~~~ipVI--ASGGv~s~eDi~ 217 (253)
T TIGR02129 146 VAMNKWQTITDLELNAETLEELSKY-CDEFLIHAADVEGLC-----KGIDEELVSKLGEWSPIPIT--YAGGAKSIDDLD 217 (253)
T ss_pred EEECCCcccCCCChHHHHHHHHHhh-CCEEEEeeecccCcc-----ccCCHHHHHHHHhhCCCCEE--EECCCCCHHHHH
Confidence 88899854 32 222 333333333 346677888888763 57789999999998999998 899999999999
Q ss_pred HHHHc--CCCEEEEcccccc
Q 021609 240 MMMQL--GCDGVFVGSGVFK 257 (310)
Q Consensus 240 ~~l~~--GadgV~VGsai~~ 257 (310)
++.+. |..++++|++|+.
T Consensus 218 ~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 218 LVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred HHHHhcCCCCcEEeeehHHH
Confidence 98655 6788999999985
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-14 Score=129.33 Aligned_cols=202 Identities=17% Similarity=0.180 Sum_probs=142.1
Q ss_pred eeecchhhhhhCcccc---cCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 25 SVKVGLAQMLRGGVIM---DVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~---~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
-++.|.++++++|... ...+| ++|+.|.+.||+++ ++||.. .+ ...+.+.++++.+.+..|+.+.
T Consensus 9 Dl~~G~~Vr~~~G~~~~~~~~~dP~~~a~~~~~~ga~~lhivDLd~a------~~---~~~n~~~i~~i~~~~~~~v~vG 79 (232)
T PRK13586 9 DISLGKAVKRIRGVKGTGLILGNPIEIASKLYNEGYTRIHVVDLDAA------EG---VGNNEMYIKEISKIGFDWIQVG 79 (232)
T ss_pred EEECCEEEEeeecCCCCceEcCCHHHHHHHHHHCCCCEEEEEECCCc------CC---CcchHHHHHHHHhhCCCCEEEe
Confidence 3556677777766431 22467 88999999999998 677522 11 1235789999988555699998
Q ss_pred cccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHH-HHHhcCCC-CcEEEec-CCHHHHHHHHHhCCCEEEEcCCCCCcch
Q 021609 99 ARIGHFVEAQILEAIGIDYVD-ESEVLTPADEEN-HINKHNFR-IPFVCGC-RNLGEALRRIREGAAMIRTKGEAGTGNI 174 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~-~i~~~~~~-i~~~v~~-~t~~ea~~~~~~Gad~V~v~g~~~~~~~ 174 (310)
..+...++++.+.+.||+.|+ ++..+..+++.+ .+++++.+ +.+-+|+ ++ ..|.++||..++
T Consensus 80 GGIrs~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~------------~~v~~~gw~~~~-- 145 (232)
T PRK13586 80 GGIRDIEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNT------------KRVLIRGWKEKS-- 145 (232)
T ss_pred CCcCCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCC------------CEEEccCCeeCC--
Confidence 888788999999999999996 666666555544 44444443 4455555 22 267788874433
Q ss_pred HHHHHHHHhhcc---ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 175 IEAVRHVRSVMG---DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 175 ~~~~~~~r~~~~---~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
.+..++++++.. ..-++++++.|++ ..++++++++.+++. ..|++ ++|||++.+|+.++.++|++|++|
T Consensus 146 ~~~~e~~~~l~~~g~~~ii~tdI~~dGt-----~~G~d~el~~~~~~~-~~~vi--asGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 146 MEVIDGIKKVNELELLGIIFTYISNEGT-----TKGIDYNVKDYARLI-RGLKE--YAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred CCHHHHHHHHHhcCCCEEEEeccccccc-----CcCcCHHHHHHHHhC-CCCEE--EECCCCCHHHHHHHHHCCCCEEEE
Confidence 123344444332 2456777777765 357789999998875 55666 799999999999999999999999
Q ss_pred cccccc
Q 021609 252 GSGVFK 257 (310)
Q Consensus 252 Gsai~~ 257 (310)
|+||+.
T Consensus 218 g~Aly~ 223 (232)
T PRK13586 218 GMAFYL 223 (232)
T ss_pred ehhhhc
Confidence 999995
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-14 Score=127.65 Aligned_cols=184 Identities=11% Similarity=0.054 Sum_probs=130.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+.++.+.++|+.+| +| |.++-+. +......+.++++.+++|++++++ ++.+.+.|+|+|. ...
T Consensus 23 ~~l~~~l~~G~~~v-qL-------R~k~~~~~~~~~la~~l~~~~~~~~~~liInd~------~~lA~~~~adGVHlg~~ 88 (211)
T PRK03512 23 QWIERLLDAGVRTL-QL-------RIKDRRDEEVEADVVAAIALGRRYQARLFINDY------WRLAIKHQAYGVHLGQE 88 (211)
T ss_pred HHHHHHHhCCCCEE-EE-------cCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCH------HHHHHHcCCCEEEcChH
Confidence 56888899999876 87 3322110 011123334455677899998764 5568889999995 555
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
++++.+..+. .+.+..+.+++|+.+++.++.+.|+||+.+.+ . ++|.++.+.
T Consensus 89 d~~~~~~r~~---~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lgp-v---------------------f~T~tK~~~--- 140 (211)
T PRK03512 89 DLETADLNAI---RAAGLRLGVSTHDDMEIDVALAARPSYIALGH-V---------------------FPTQTKQMP--- 140 (211)
T ss_pred hCCHHHHHHh---cCCCCEEEEeCCCHHHHHHHhhcCCCEEEECC-c---------------------cCCCCCCCC---
Confidence 5554444432 24567899999999999999999999998753 2 223222100
Q ss_pred hhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 203 AKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.....++.++++.+. .++||+++ ||| +++++.+++++|++||.+.|+|++++||...++++.+.+..+.
T Consensus 141 --~~~~G~~~l~~~~~~~~~~PV~Ai--GGI-~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~~~~~ 210 (211)
T PRK03512 141 --SAPQGLAQLARHVERLADYPTVAI--GGI-SLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELAEVGD 210 (211)
T ss_pred --CCCCCHHHHHHHHHhcCCCCEEEE--CCC-CHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHHhhcc
Confidence 011235556666554 47999955 999 6999999999999999999999999999999999999887654
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=128.73 Aligned_cols=182 Identities=15% Similarity=0.131 Sum_probs=129.8
Q ss_pred HHHHHHHHcC-CcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 46 EQARVAEEAG-ACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~G-a~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
+.++.+.++| +++| +| |.+.-+. +......++++++.+++|++++++ ++.+.+.|+|+|. ..
T Consensus 30 ~~l~~al~~G~v~~v-Ql-------R~K~l~~~~~~~~a~~l~~l~~~~gv~liINd~------~dlA~~~~adGVHLg~ 95 (221)
T PRK06512 30 KLLRAALQGGDVASV-IL-------PQYGLDEATFQKQAEKLVPVIQEAGAAALIAGD------SRIAGRVKADGLHIEG 95 (221)
T ss_pred HHHHHHHcCCCccEE-EE-------eCCCCCHHHHHHHHHHHHHHHHHhCCEEEEeCH------HHHHHHhCCCEEEECc
Confidence 6788888999 6876 77 3222110 111123445556667899998874 5568889999996 55
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHH
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~ 200 (310)
++....+.++. .+.+..++++ +++.+++..+.+.|+||+.+.+ .++. +.++
T Consensus 96 ~d~~~~~~r~~---~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gp-v~t~---------------------tK~~--- 147 (221)
T PRK06512 96 NLAALAEAIEK---HAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGK-LGAD---------------------NKPE--- 147 (221)
T ss_pred cccCHHHHHHh---cCCCCEEEecCCCCHHHHHHhhhcCCCEEEECC-CCCC---------------------CCCC---
Confidence 55555444443 2456778887 6778888888899999998754 2321 1100
Q ss_pred HhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 201 TFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 201 ~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
......+.++++++..++||++| ||| +++++.+++++|++||.+.|+|++++||...+++|.+.+..+.
T Consensus 148 ----~~p~gl~~l~~~~~~~~iPvvAI--GGI-~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~~~ 216 (221)
T PRK06512 148 ----AHPRNLSLAEWWAEMIEIPCIVQ--AGS-DLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDEKA 216 (221)
T ss_pred ----CCCCChHHHHHHHHhCCCCEEEE--eCC-CHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhhcc
Confidence 01223667777777788999955 999 7999999999999999999999999999999999999887654
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-14 Score=128.06 Aligned_cols=194 Identities=26% Similarity=0.335 Sum_probs=133.8
Q ss_pred eeecchhhhhhCccc----ccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGVI----MDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i----~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
-++.|.++++.+|.. ....+| +.|+.+.+.|++++ ++++.. +.+ ...+.+.++++++.+++|+++
T Consensus 7 dl~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~d~l~v~dl~~~------~~~--~~~~~~~i~~i~~~~~~pv~~ 78 (234)
T cd04732 7 DLKDGKCVRLYQGDYDKKTVYSDDPVEVAKKWEEAGAKWLHVVDLDGA------KGG--EPVNLELIEEIVKAVGIPVQV 78 (234)
T ss_pred EeECCEEEEeecccCCCCeEECCCHHHHHHHHHHcCCCEEEEECCCcc------ccC--CCCCHHHHHHHHHhcCCCEEE
Confidence 455667766666544 224566 78999999999998 344311 111 134578999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCCchhH-HHHHHhcCC-CCcEEEec---------------CCHHH-HHHHHHh
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLTPADE-ENHINKHNF-RIPFVCGC---------------RNLGE-ALRRIRE 158 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~-~~~i~~~~~-~i~~~v~~---------------~t~~e-a~~~~~~ 158 (310)
...+...++++.+.+.|||.|+ .+..+...++ .+..+..+. .+.+.+++ .+..+ +....+.
T Consensus 79 ~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T cd04732 79 GGGIRSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEEL 158 (234)
T ss_pred eCCcCCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHc
Confidence 9888888899999999999996 4444443443 444443333 23333332 12223 3334566
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~ 238 (310)
|++.+.++.....+ . ..++++++++++++..++|++ ++|||++++|+
T Consensus 159 ga~~iii~~~~~~g--------------------------~-----~~g~~~~~i~~i~~~~~ipvi--~~GGi~~~~di 205 (234)
T cd04732 159 GVKAIIYTDISRDG--------------------------T-----LSGPNFELYKELAAATGIPVI--ASGGVSSLDDI 205 (234)
T ss_pred CCCEEEEEeecCCC--------------------------c-----cCCCCHHHHHHHHHhcCCCEE--EecCCCCHHHH
Confidence 77777666432111 0 124668899999988899998 78999999999
Q ss_pred HHHHHcCCCEEEEccccccCC
Q 021609 239 AMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 239 ~~~l~~GadgV~VGsai~~a~ 259 (310)
.++++.|||+|++||+++...
T Consensus 206 ~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 206 KALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred HHHHHCCCCEEEEeHHHHcCC
Confidence 999999999999999999854
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-14 Score=127.88 Aligned_cols=193 Identities=23% Similarity=0.275 Sum_probs=130.2
Q ss_pred eecchhhhhhCccccc----CCCH-HHHHHHHHcCCcEEE--eccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 26 VKVGLAQMLRGGVIMD----VVTP-EQARVAEEAGACAVM--ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 26 ~~~~~~~~~~~g~i~~----~~~~-~~A~~~~~~Ga~~i~--~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
++.|.++++.+|.... ..+| +.|+.|.+.|++++. +++.. ..| ...+.+.++++++.+++|+++.
T Consensus 9 ~~~g~~v~~~~G~~~~~~~~~~~~~~~a~~~~~~g~~~i~v~dld~~------~~g--~~~~~~~i~~i~~~~~~pv~~~ 80 (233)
T PRK00748 9 LKDGKCVRLYQGDYDQATVYSDDPVAQAKAWEDQGAKWLHLVDLDGA------KAG--KPVNLELIEAIVKAVDIPVQVG 80 (233)
T ss_pred EECCeEEEccccccccceEecCCHHHHHHHHHHcCCCEEEEEeCCcc------ccC--CcccHHHHHHHHHHCCCCEEEc
Confidence 3455555555554333 2355 789999999999983 44211 111 1345889999999999999999
Q ss_pred cccCcHHHHHHHHHcCCCEEE-eCCCCCch-hHHHHHHhcCCCCcEEEecC---------------CHHH-HHHHHHhCC
Q 021609 99 ARIGHFVEAQILEAIGIDYVD-ESEVLTPA-DEENHINKHNFRIPFVCGCR---------------NLGE-ALRRIREGA 160 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~-~~~~~i~~~~~~i~~~v~~~---------------t~~e-a~~~~~~Ga 160 (310)
..+...++++.+.+.||+.|+ .+..++.. .+.+..+.....+.+.+++. +..+ ++.+.+.|+
T Consensus 81 GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~ 160 (233)
T PRK00748 81 GGIRSLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGV 160 (233)
T ss_pred CCcCCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCC
Confidence 988888999999999999996 55444433 34444443322344444542 1122 222334456
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
+.+.++.. ++++. ..++++++++++++..++|++ ++|||++++|+.+
T Consensus 161 ~~ii~~~~--------------------------~~~g~-----~~G~d~~~i~~l~~~~~ipvi--a~GGi~~~~di~~ 207 (233)
T PRK00748 161 KAIIYTDI--------------------------SRDGT-----LSGPNVEATRELAAAVPIPVI--ASGGVSSLDDIKA 207 (233)
T ss_pred CEEEEeee--------------------------cCcCC-----cCCCCHHHHHHHHHhCCCCEE--EeCCCCCHHHHHH
Confidence 55444432 22221 134678999999988889998 7999999999999
Q ss_pred HHHcC-CCEEEEccccccCC
Q 021609 241 MMQLG-CDGVFVGSGVFKSG 259 (310)
Q Consensus 241 ~l~~G-adgV~VGsai~~a~ 259 (310)
+++.| |+||++|++++...
T Consensus 208 ~~~~g~~~gv~vg~a~~~~~ 227 (233)
T PRK00748 208 LKGLGAVEGVIVGRALYEGK 227 (233)
T ss_pred HHHcCCccEEEEEHHHHcCC
Confidence 99988 99999999999743
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-14 Score=127.54 Aligned_cols=193 Identities=23% Similarity=0.286 Sum_probs=131.0
Q ss_pred eecchhhhhhCccccc----CCCH-HHHHHHHHcCCcEEE--eccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 26 VKVGLAQMLRGGVIMD----VVTP-EQARVAEEAGACAVM--ALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 26 ~~~~~~~~~~~g~i~~----~~~~-~~A~~~~~~Ga~~i~--~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
++.|.++++.+|.... ..+| +.|+.|.+.|+++++ +|+.. +.| ...+.+.++++++.+++|++++
T Consensus 7 ~~~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~dl~~~------~~g--~~~~~~~i~~i~~~~~~pi~~g 78 (230)
T TIGR00007 7 IKDGKCVRLYQGDYDKETVYGDDPVEAAKKWEEEGAERIHVVDLDGA------KEG--GPVNLPVIKKIVRETGVPVQVG 78 (230)
T ss_pred eeCCEEEEeeccccCcceEecCCHHHHHHHHHHcCCCEEEEEeCCcc------ccC--CCCcHHHHHHHHHhcCCCEEEe
Confidence 3445555444443222 2356 789999999999983 44311 111 1345789999999999999999
Q ss_pred cccCcHHHHHHHHHcCCCEEE-eCCCCC-chhHHHHHHhcCCC-CcEEEecC---------------C-HHHHHHHHHhC
Q 021609 99 ARIGHFVEAQILEAIGIDYVD-ESEVLT-PADEENHINKHNFR-IPFVCGCR---------------N-LGEALRRIREG 159 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi-~~~~~~-~~~~~~~i~~~~~~-i~~~v~~~---------------t-~~ea~~~~~~G 159 (310)
.++...++++.+.++|||.|+ .+..+. +..+.+..+..+.. +.+.++++ + .+-++++.+.|
T Consensus 79 gGI~~~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g 158 (230)
T TIGR00007 79 GGIRSLEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG 158 (230)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC
Confidence 988888999999999999996 444444 44445555544433 44433422 2 22234455667
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
++.+.++... .++. ..+.++++++++++..++|++ ++|||++++|+.
T Consensus 159 ~~~ii~~~~~--------------------------~~g~-----~~g~~~~~i~~i~~~~~ipvi--a~GGi~~~~di~ 205 (230)
T TIGR00007 159 LEGIIYTDIS--------------------------RDGT-----LSGPNFELTKELVKAVNVPVI--ASGGVSSIDDLI 205 (230)
T ss_pred CCEEEEEeec--------------------------CCCC-----cCCCCHHHHHHHHHhCCCCEE--EeCCCCCHHHHH
Confidence 7655544321 1111 124568889999888889998 799999999999
Q ss_pred HHHHcCCCEEEEccccccCC
Q 021609 240 MMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 240 ~~l~~GadgV~VGsai~~a~ 259 (310)
+++..|||+|++||+++...
T Consensus 206 ~~~~~Gadgv~ig~a~~~~~ 225 (230)
T TIGR00007 206 ALKKLGVYGVIVGKALYEGK 225 (230)
T ss_pred HHHHCCCCEEEEeHHHHcCC
Confidence 99999999999999999743
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=135.66 Aligned_cols=181 Identities=20% Similarity=0.226 Sum_probs=132.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+.+..+.++|+.+| +| |.+..+. +......+..+++.++++++++++ ++.+.+.|+|+|. ...
T Consensus 161 ~~l~~al~~Gv~~V-QL-------R~K~~~~~~~~~~a~~L~~l~~~~~~~lIIND~------vdlAl~~~aDGVHLgq~ 226 (347)
T PRK02615 161 EVVEAALKGGVTLV-QY-------RDKTADDRQRLEEAKKLKELCHRYGALFIVNDR------VDIALAVDADGVHLGQE 226 (347)
T ss_pred HHHHHHHHcCCCEE-EE-------CCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCh------HHHHHHcCCCEEEeChh
Confidence 45777888998875 77 3222110 111234556667778899998775 4578889999996 445
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
+++..+..+. .+++..+++++||.+++..+.+.|+|||.+.+-..| .++.+
T Consensus 227 dl~~~~aR~l---lg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf~T----------------------~tKp~---- 277 (347)
T PRK02615 227 DLPLAVARQL---LGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPVFPT----------------------PTKPG---- 277 (347)
T ss_pred hcCHHHHHHh---cCCCCEEEEecCCHHHHHHHHHcCCCEEEECCCcCC----------------------CCCCC----
Confidence 5554444433 356678999999999999999999999998642222 22110
Q ss_pred hhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 203 AKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
.....++.++.+++..++|++ |.||| +++++.+++.+|++||.|+++|++++||...++.|.+.++.
T Consensus 278 --~~~~Gle~l~~~~~~~~iPv~--AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~ 344 (347)
T PRK02615 278 --KAPAGLEYLKYAAKEAPIPWF--AIGGI-DKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSR 344 (347)
T ss_pred --CCCCCHHHHHHHHHhCCCCEE--EECCC-CHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhc
Confidence 012347788888877789999 45999 69999999999999999999999999999999988887764
|
|
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=138.13 Aligned_cols=186 Identities=15% Similarity=0.068 Sum_probs=133.3
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
.+.++.+.++|++.| +| |.+.-+. +......+.++.+.++++++++++ .+.+.+.|+|+|. +.
T Consensus 220 ~~~ve~aL~aGv~~V-QL-------ReK~ls~~el~~la~~l~~l~~~~gv~LiIND~------~dlAl~~gAdGVHLGQ 285 (437)
T PRK12290 220 VEWIERLLPLGINTV-QL-------RIKDPQQADLEQQIIRAIALGREYNAQVFINDY------WQLAIKHQAYGVHLGQ 285 (437)
T ss_pred HHHHHHHHhCCCCEE-EE-------eCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECH------HHHHHHcCCCEEEcCh
Confidence 367888999999976 88 3322110 011123344445667899998774 5678889999995 66
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHH
Q 021609 122 EVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~ 201 (310)
++++..+.++.+ +.+..+++++|+.+|+.++.+.|+|||.+.. +++|.++..-
T Consensus 286 eDL~~~~aR~il---g~~~iIGvStHs~eEl~~A~~~gaDYI~lGP----------------------IFpT~TK~~~-- 338 (437)
T PRK12290 286 EDLEEANLAQLT---DAGIRLGLSTHGYYELLRIVQIQPSYIALGH----------------------IFPTTTKQMP-- 338 (437)
T ss_pred HHcchhhhhhhc---CCCCEEEEecCCHHHHHHHhhcCCCEEEECC----------------------ccCCCCCCCC--
Confidence 666665555443 4578899999999999999999999998753 2334332100
Q ss_pred hhhccCCcHHHHHHHhhc---------CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 202 FAKKIAAPYDLVMQTKQL---------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 202 ~~~~~~~~~~~i~~i~~~---------~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
...-.++.++++++. .++|+++| ||| +++++.+++++|++||.|-|+|++++||...+++|.+.+
T Consensus 339 ---~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI--GGI-~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~ 412 (437)
T PRK12290 339 ---SKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI--GGI-DQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVM 412 (437)
T ss_pred ---CCCCCHHHHHHHHHHhhhccccccCCCCEEEE--CCc-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHH
Confidence 011225555544433 26999966 999 799999999999999999999999999999999999988
Q ss_pred hccCC
Q 021609 273 THYSD 277 (310)
Q Consensus 273 ~~~~~ 277 (310)
+....
T Consensus 413 ~~~~~ 417 (437)
T PRK12290 413 AENQL 417 (437)
T ss_pred hhcCC
Confidence 87654
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-14 Score=128.36 Aligned_cols=207 Identities=14% Similarity=0.062 Sum_probs=147.5
Q ss_pred eeecchhhhhhCcccccC---CCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 25 SVKVGLAQMLRGGVIMDV---VTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~~---~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
-++.|.++++.+|...+. .+| +.++.+.+.|+.++ ++|+.. .+ ...+.+.++++.+.+++|+.+.
T Consensus 10 Dl~~G~vVrl~~G~~~~~~~y~~p~~~a~~~~~~g~~~lhivDLd~a------~g---~~~n~~~i~~i~~~~~~~v~vg 80 (243)
T TIGR01919 10 DVNGGAAVRLQQGAGGSKTYYGSLESAAKWWEQGGAEWIHLVDLDAA------FG---GGNNEMMLEEVVKLLVVVEELS 80 (243)
T ss_pred EEECCEEEEeecCCCCCceecCCHHHHHHHHHhCCCeEEEEEECCCC------CC---CcchHHHHHHHHHHCCCCEEEc
Confidence 356777888887754333 355 67888999999887 566421 11 2345789999999999999999
Q ss_pred cccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhC-CCEEEEcCCCCCcchH
Q 021609 99 ARIGHFVEAQILEAIGIDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREG-AAMIRTKGEAGTGNII 175 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~G-ad~V~v~g~~~~~~~~ 175 (310)
..+...++++.+.+.|++.|+ ++..++.+++.+.+.+ ++..+.+.+|... -| -..+.++||..++ .
T Consensus 81 GGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~---------~g~~~~v~~~Gw~~~~--~ 149 (243)
T TIGR01919 81 GGRRDDSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLE---------DGEWHTLGNRGWSDGG--G 149 (243)
T ss_pred CCCCCHHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEec---------CCceEEEECCCeecCC--C
Confidence 888888999999999999996 6666666666544443 4323445555531 02 1256777885433 2
Q ss_pred HHHHHHHhhcc---ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH---HcCCCEE
Q 021609 176 EAVRHVRSVMG---DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM---QLGCDGV 249 (310)
Q Consensus 176 ~~~~~~r~~~~---~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l---~~GadgV 249 (310)
+..++++++.. ..-+++++++|++ ..++++++++++++.+++||+ ++|||++.+|+.++. ..|++||
T Consensus 150 ~~~~~~~~~~~~g~~~ii~tdI~~dGt-----~~G~d~~l~~~l~~~~~~pvi--asGGv~s~eDl~~l~~l~~~Gv~gv 222 (243)
T TIGR01919 150 DLEVLERLLDSGGCSRVVVTDSKKDGL-----SGGPNELLLEVVAARTDAIVA--ASGGSSLLDDLRAIKYLDEGGVSVA 222 (243)
T ss_pred cHHHHHHHHHhCCCCEEEEEecCCccc-----CCCcCHHHHHHHHhhCCCCEE--EECCcCCHHHHHHHHhhccCCeeEE
Confidence 34444444332 2566777787765 257789999999988899998 899999999999875 3599999
Q ss_pred EEccccccC
Q 021609 250 FVGSGVFKS 258 (310)
Q Consensus 250 ~VGsai~~a 258 (310)
++|++|+.-
T Consensus 223 ivg~Al~~g 231 (243)
T TIGR01919 223 IGGKLLYAR 231 (243)
T ss_pred EEhHHHHcC
Confidence 999999973
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-15 Score=135.33 Aligned_cols=207 Identities=28% Similarity=0.355 Sum_probs=145.6
Q ss_pred eeecchhhhhhCccc----ccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGVI----MDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i----~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
-++.|.++++.+|.. .+..+| ++|+.|.+.|++++ ++||... .| ...+.+.++++.+.+.+|+++
T Consensus 7 Dl~~G~~Vr~~~G~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLdaa~------~g--~~~n~~~i~~i~~~~~~~i~v 78 (229)
T PF00977_consen 7 DLKNGRVVRLVKGDRFSETVYSGDPVEVAKAFNEQGADELHIVDLDAAK------EG--RGSNLELIKEIAKETGIPIQV 78 (229)
T ss_dssp EEETTEEEEESTTCCSCEECECCCHHHHHHHHHHTT-SEEEEEEHHHHC------CT--HHHHHHHHHHHHHHSSSEEEE
T ss_pred EEECCEEEECCCeecceeeEECcCHHHHHHHHHHcCCCEEEEEEccCcc------cC--chhHHHHHHHHHhcCCccEEE
Confidence 456778888888865 445677 88999999999998 6775221 11 123468999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCC-chhHHHHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCC--c
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLT-PADEENHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGEAGT--G 172 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~-~~~~~~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~--~ 172 (310)
...+...++++.+.++||+.|+ .+..+. +..+.++.+.++. .+.+.+|++. | ..+.+++|... -
T Consensus 79 gGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~----------g-~~v~~~gw~~~~~~ 147 (229)
T PF00977_consen 79 GGGIRSIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARD----------G-YKVATNGWQESSGI 147 (229)
T ss_dssp ESSE-SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEE----------T-EEEEETTTTEEEEE
T ss_pred eCccCcHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeee----------c-eEEEecCccccCCc
Confidence 9888888999999999999986 555544 4445555555555 3666667644 2 35677887532 2
Q ss_pred chHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 173 NIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 173 ~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
++.+..+.+.+.....-++++++.|++ ..++++++++++++..++|++ ++|||++.+|+.++...|+++|++|
T Consensus 148 ~~~~~~~~~~~~g~~~ii~tdi~~dGt-----~~G~d~~~~~~l~~~~~~~vi--asGGv~~~~Dl~~l~~~G~~gvivg 220 (229)
T PF00977_consen 148 DLEEFAKRLEELGAGEIILTDIDRDGT-----MQGPDLELLKQLAEAVNIPVI--ASGGVRSLEDLRELKKAGIDGVIVG 220 (229)
T ss_dssp EHHHHHHHHHHTT-SEEEEEETTTTTT-----SSS--HHHHHHHHHHHSSEEE--EESS--SHHHHHHHHHTTECEEEES
T ss_pred CHHHHHHHHHhcCCcEEEEeeccccCC-----cCCCCHHHHHHHHHHcCCCEE--EecCCCCHHHHHHHHHCCCcEEEEe
Confidence 334444444444444557777777765 356789999999887899998 7999999999999999999999999
Q ss_pred ccccc
Q 021609 253 SGVFK 257 (310)
Q Consensus 253 sai~~ 257 (310)
++|+.
T Consensus 221 ~al~~ 225 (229)
T PF00977_consen 221 SALHE 225 (229)
T ss_dssp HHHHT
T ss_pred hHhhC
Confidence 99985
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-13 Score=124.59 Aligned_cols=180 Identities=19% Similarity=0.240 Sum_probs=128.8
Q ss_pred CH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 44 TP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 44 ~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
++ +.++.+++.|+++++.++-. + .|.....+.+.++++++.+++|+++...+...++++.+.+.|++.|+ .+
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~----~--~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~ 101 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDIT----A--SSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINS 101 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCC----c--ccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECc
Confidence 55 88999999999988433311 0 11112346789999999999999999888888899999999999996 44
Q ss_pred CCCC-chhHHHHHHhcCCC-CcEEEecC---------------------CHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 122 EVLT-PADEENHINKHNFR-IPFVCGCR---------------------NLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 122 ~~~~-~~~~~~~i~~~~~~-i~~~v~~~---------------------t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
..+. |..+.++.+..+.+ +.+.+++. +.+.++.+.+.|++++.+++....+.
T Consensus 102 ~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~----- 176 (243)
T cd04731 102 AAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT----- 176 (243)
T ss_pred hhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCC-----
Confidence 4443 43344444443322 44444432 23445667778999888876432111
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEcccccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFK 257 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~ 257 (310)
..+.++++++++++..++||+ ++|||++++|+.++++. |||+|++|++++.
T Consensus 177 --------------------------~~g~~~~~i~~i~~~~~~pvi--a~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 177 --------------------------KKGYDLELIRAVSSAVNIPVI--ASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred --------------------------CCCCCHHHHHHHHhhCCCCEE--EeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 124568889999888899998 78999999999999986 9999999999998
Q ss_pred CCCHH
Q 021609 258 SGDPV 262 (310)
Q Consensus 258 a~dp~ 262 (310)
.....
T Consensus 229 ~~~~~ 233 (243)
T cd04731 229 GEYTI 233 (243)
T ss_pred CCCCH
Confidence 55543
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-13 Score=124.01 Aligned_cols=205 Identities=21% Similarity=0.277 Sum_probs=140.4
Q ss_pred eeecchhhhhhCcccc----------cCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhc
Q 021609 25 SVKVGLAQMLRGGVIM----------DVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSV 91 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~----------~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~ 91 (310)
-++.|.++++.+|... +..+| ++|+.|.+.|++++ ++|+.. .+ ...+.+.++++.+.+
T Consensus 7 Dl~~G~~V~~~~G~~~~~~p~~~~~~~~~dp~~~a~~~~~~g~~~l~i~DLd~~------~~---~~~n~~~i~~i~~~~ 77 (233)
T cd04723 7 DLKDGVVVHGVGGDRDNYRPITSNLCSTSDPLDVARAYKELGFRGLYIADLDAI------MG---RGDNDEAIRELAAAW 77 (233)
T ss_pred ECcCCEEEEeeccChhhccccccCcccCCCHHHHHHHHHHCCCCEEEEEeCccc------cC---CCccHHHHHHHHHhC
Confidence 4556777777776632 23466 79999999999998 677522 11 234588999999999
Q ss_pred CcceeeccccCcHHHHHHHHHcCCCEEE-eCCCCCchhHH-HHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCC
Q 021609 92 TIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVLTPADEE-NHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 92 ~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~-~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
.+|+++...+...++++.+..+||+.|+ .+..+.. ++. +.+++++. .+.+.++++..+ +. . .
T Consensus 78 ~~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~------------~~-~-~ 142 (233)
T cd04723 78 PLGLWVDGGIRSLENAQEWLKRGASRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQ------------LL-K-P 142 (233)
T ss_pred CCCEEEecCcCCHHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCe------------ec-c-c
Confidence 9999998888788999999999999986 6666666 554 44444433 355555654320 00 0 0
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
....++.+..+...+. ...-++.+++.++. ..++++++++++.+..++|++ ++|||++.+|+.+++.+|+++
T Consensus 143 ~~~~~~~~~~~~~~~~-~~~li~~di~~~G~-----~~g~~~~~~~~i~~~~~ipvi--~~GGi~s~edi~~l~~~G~~~ 214 (233)
T cd04723 143 TDFIGPEELLRRLAKW-PEELIVLDIDRVGS-----GQGPDLELLERLAARADIPVI--AAGGVRSVEDLELLKKLGASG 214 (233)
T ss_pred cCcCCHHHHHHHHHHh-CCeEEEEEcCcccc-----CCCcCHHHHHHHHHhcCCCEE--EeCCCCCHHHHHHHHHcCCCE
Confidence 0111233444444444 33334444444332 245678899999888899998 789999999999999999999
Q ss_pred EEEccccccCCCH
Q 021609 249 VFVGSGVFKSGDP 261 (310)
Q Consensus 249 V~VGsai~~a~dp 261 (310)
|++||+++...-+
T Consensus 215 vivGsal~~g~~~ 227 (233)
T cd04723 215 ALVASALHDGGLT 227 (233)
T ss_pred EEEehHHHcCCCC
Confidence 9999999985433
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-14 Score=133.38 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=136.8
Q ss_pred cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc
Q 021609 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR 100 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~ 100 (310)
-..|+|++|+++ +.|.+++++++|.++.++|.-+++.....+. ....+.++++++.++-|+.++..
T Consensus 5 t~~lgi~~PIiq----apM~~is~~~LaaAVs~aGglG~l~~~~~~~----------~~l~~~i~~~~~~t~~pfgvnl~ 70 (330)
T PF03060_consen 5 TELLGIKYPIIQ----APMGGISTPELAAAVSNAGGLGFLGAGGLTP----------EQLREEIRKIRALTDKPFGVNLF 70 (330)
T ss_dssp HHHHT-SSSEEE-------TTTSSHHHHHHHHHTTSBEEEECTTSSH----------HHHHHHHHHHHHH-SS-EEEEEE
T ss_pred HHHhCCCcCEEc----CCCCCCChHHHHHHHHhCCCEeeccccccCh----------HHHHHHHHHHHhhcccccccccc
Confidence 356899999999 5667799999999999999998754311100 01135777778888889998765
Q ss_pred cCc---HHH------------HHHHHHcCCC--------------EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHH
Q 021609 101 IGH---FVE------------AQILEAIGID--------------YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGE 151 (310)
Q Consensus 101 ~~~---~~~------------a~~~~~aGad--------------~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~e 151 (310)
... ... .+...+.|+. .|..+...++.+..+.++. .++.++..+.|.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~--~gi~v~~~v~s~~~ 148 (330)
T PF03060_consen 71 LPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPPEVIERLHA--AGIKVIPQVTSVRE 148 (330)
T ss_dssp TTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-HHHHHHHHH--TT-EEEEEESSHHH
T ss_pred ccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccchHHHHHHHHH--cCCccccccCCHHH
Confidence 421 111 2344455555 8876666666777777654 57889999999999
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGG 231 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GG 231 (310)
++++.+.|+|.|.+.|+..+||.- ......+.++.++++..++||+ ++||
T Consensus 149 A~~a~~~G~D~iv~qG~eAGGH~g----------------------------~~~~~~~~L~~~v~~~~~iPVi--aAGG 198 (330)
T PF03060_consen 149 ARKAAKAGADAIVAQGPEAGGHRG----------------------------FEVGSTFSLLPQVRDAVDIPVI--AAGG 198 (330)
T ss_dssp HHHHHHTT-SEEEEE-TTSSEE-------------------------------SSG-HHHHHHHHHHH-SS-EE--EESS
T ss_pred HHHhhhcCCCEEEEeccccCCCCC----------------------------ccccceeeHHHHHhhhcCCcEE--EecC
Confidence 999999999999999887666621 0112347788889888899998 7899
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 232 I~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
|.+.+++..++.+|||||++||+|+-++... ....+++.+.+
T Consensus 199 I~dg~~iaaal~lGA~gV~~GTrFl~t~Es~-~~~~~K~~l~~ 240 (330)
T PF03060_consen 199 IADGRGIAAALALGADGVQMGTRFLATEESG-ASDAYKQALVD 240 (330)
T ss_dssp --SHHHHHHHHHCT-SEEEESHHHHTSTTS--S-HHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCEeecCCeEEeccccc-ChHHHHHHHHh
Confidence 9999999999999999999999999865422 22335555543
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-13 Score=123.80 Aligned_cols=183 Identities=19% Similarity=0.210 Sum_probs=125.9
Q ss_pred ccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCC
Q 021609 40 MDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 40 ~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad 116 (310)
.+..+| +.|+.+++.|++++ .++++.. .....+.+.++++++.+++|+++...+...++++.+.+.|++
T Consensus 27 ~~~~d~~~~a~~~~~~G~~~i~i~dl~~~~--------~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~ 98 (253)
T PRK02083 27 RDAGDPVELAKRYNEEGADELVFLDITASS--------EGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGAD 98 (253)
T ss_pred eecCCHHHHHHHHHHcCCCEEEEEeCCccc--------ccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCC
Confidence 345566 88999999999998 3443210 111345889999999999999998888888999999999999
Q ss_pred EEE-eCCCCCchhH-HHHHHhcCCC-CcEEEecCC----------------------HHHHHHHHHhCCCEEEEcCCCCC
Q 021609 117 YVD-ESEVLTPADE-ENHINKHNFR-IPFVCGCRN----------------------LGEALRRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 117 ~Vi-~~~~~~~~~~-~~~i~~~~~~-i~~~v~~~t----------------------~~ea~~~~~~Gad~V~v~g~~~~ 171 (310)
.|+ .+..+..+++ .+..+..+.+ +.+.+++.+ .+.+.++.+.|++.+.++..
T Consensus 99 ~Viigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i--- 175 (253)
T PRK02083 99 KVSINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSM--- 175 (253)
T ss_pred EEEEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCC---
Confidence 996 4444443344 4444334323 444555432 22334455566666555432
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVF 250 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~ 250 (310)
+++++ ..++++++++++++..++|++ ++|||++++|+.++++ .|+++|+
T Consensus 176 -----------------------~~~g~-----~~g~d~~~i~~~~~~~~ipvi--a~GGv~s~~d~~~~~~~~G~~gvi 225 (253)
T PRK02083 176 -----------------------DRDGT-----KNGYDLELTRAVSDAVNVPVI--ASGGAGNLEHFVEAFTEGGADAAL 225 (253)
T ss_pred -----------------------cCCCC-----CCCcCHHHHHHHHhhCCCCEE--EECCCCCHHHHHHHHHhCCccEEe
Confidence 11111 134568899999888889998 7899999999999996 5999999
Q ss_pred EccccccCCCHHH
Q 021609 251 VGSGVFKSGDPVK 263 (310)
Q Consensus 251 VGsai~~a~dp~~ 263 (310)
+|++++.-..+..
T Consensus 226 vg~al~~~~~~~~ 238 (253)
T PRK02083 226 AASIFHFGEITIG 238 (253)
T ss_pred EhHHHHcCCCCHH
Confidence 9999997544443
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-13 Score=122.83 Aligned_cols=195 Identities=15% Similarity=0.242 Sum_probs=124.3
Q ss_pred CCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 43 VTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 43 ~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.+| ++|+.|.+.|++++ ++|+.. +.....+.+.++++.+.+++|+++...+...++++.+.+.|++.|+
T Consensus 30 ~dp~~~a~~~~~~g~~~l~i~Dl~~~--------~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vv 101 (258)
T PRK01033 30 GDPINAVRIFNEKEVDELIVLDIDAS--------KRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVS 101 (258)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCC--------cCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEE
Confidence 466 78999999999998 455311 1112456899999999899999998887777889999999999996
Q ss_pred -eCCCCCchhH-HHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCC-Cc-chHHHHHHHHhhccceEeeccc
Q 021609 120 -ESEVLTPADE-ENHINKHNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAG-TG-NIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 120 -~~~~~~~~~~-~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~-~~-~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
.+..++..++ .++++..+.+ +.+.++++.. ..|...+.++||.. +. .+.+..+...+.....-+++..
T Consensus 102 igs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g-------~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i 174 (258)
T PRK01033 102 INTAALEDPDLITEAAERFGSQSVVVSIDVKKN-------LGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSI 174 (258)
T ss_pred EChHHhcCHHHHHHHHHHhCCCcEEEEEEEecC-------CCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEcc
Confidence 5544454444 4444444322 4444454321 00111233333311 00 1111111111111112222333
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCC
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~ 259 (310)
+.+++ ..++++++++++++..++||+ ++|||++.+|+.+++ ..|+|||++|++|.-.+
T Consensus 175 ~~~G~-----~~G~d~~~i~~~~~~~~ipvI--asGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~ 233 (258)
T PRK01033 175 DRDGT-----MKGYDLELLKSFRNALKIPLI--ALGGAGSLDDIVEAILNLGADAAAAGSLFVFKG 233 (258)
T ss_pred CCCCC-----cCCCCHHHHHHHHhhCCCCEE--EeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCc
Confidence 33332 135679999999988899998 899999999999999 79999999999999863
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=135.20 Aligned_cols=147 Identities=31% Similarity=0.458 Sum_probs=114.0
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcC-cceeeccccCcHHHHHHHHHcCCCE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVT-IPVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~-iPv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
+.|+.+++.|++.| +|| |+++..+...|++++.+++.+.++ +++++ +||.+|.|+|+.+.
T Consensus 83 eaA~~~~~~g~~~I-dlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~----------- 150 (323)
T COG0042 83 EAAKIAEELGADII-DLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDD----------- 150 (323)
T ss_pred HHHHHHHhcCCCEE-eeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcc-----------
Confidence 56788899998876 998 888888888899999999877765 56674 99999999986321
Q ss_pred EEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChh
Q 021609 118 VDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d 197 (310)
+ ....+-++.+.+.|++.+.+|+++... .+
T Consensus 151 ----------~-----------------~~~~~ia~~~~~~g~~~ltVHgRtr~~-------------------~y---- 180 (323)
T COG0042 151 ----------D-----------------ILALEIARILEDAGADALTVHGRTRAQ-------------------GY---- 180 (323)
T ss_pred ----------c-----------------ccHHHHHHHHHhcCCCEEEEecccHHh-------------------cC----
Confidence 0 011223555667899999999975210 00
Q ss_pred HHHHhhhccCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHH
Q 021609 198 EVFTFAKKIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~a 265 (310)
....+++.++++++..+ +||+ ++|+|.|++|+.++++ .|+||||+|++.+. ||+...
T Consensus 181 -------~~~ad~~~I~~vk~~~~~ipvi--~NGdI~s~~~a~~~l~~tg~DgVMigRga~~--nP~l~~ 239 (323)
T COG0042 181 -------LGPADWDYIKELKEAVPSIPVI--ANGDIKSLEDAKEMLEYTGADGVMIGRGALG--NPWLFR 239 (323)
T ss_pred -------CCccCHHHHHHHHHhCCCCeEE--eCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc--CCcHHH
Confidence 12357999999999877 9998 8999999999999996 68999999999997 777544
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-13 Score=122.63 Aligned_cols=172 Identities=26% Similarity=0.360 Sum_probs=132.0
Q ss_pred HHHHHHHHcCCCEEEe----CC--CCCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh-----CCCEEE--EcCC--
Q 021609 105 VEAQILEAIGIDYVDE----SE--VLTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE-----GAAMIR--TKGE-- 168 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~----~~--~~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~-----Gad~V~--v~g~-- 168 (310)
...+.+.++|++.|.. .+ ......+.+.+...++. ++++.+|+|.+||.+.+++ |-++|+ +.+.
T Consensus 24 ~~~~ai~aSg~~ivTva~rR~~~~~~~~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~ 103 (248)
T cd04728 24 IMKEAIEASGAEIVTVALRRVNIGDPGGESFLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDK 103 (248)
T ss_pred HHHHHHHHhCCCEEEEEEEecccCCCCcchHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence 3345666788888841 11 12345667777655555 8999999999999987653 668887 4443
Q ss_pred CCCcchHHHHHHHHhhccc-eEeecccChhHHHHhh------hccC------------CcHHHHHHHhhcCCCCEEEeCC
Q 021609 169 AGTGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTFA------KKIA------------APYDLVMQTKQLGRLPVVHFAA 229 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~~------~~~~------------~~~~~i~~i~~~~~iPVi~iA~ 229 (310)
...+++.+++++.+++... |.++|++.+|....-. .-.. ...++++.+++..++||+ +.
T Consensus 104 ~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI--~e 181 (248)
T cd04728 104 TLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVI--VD 181 (248)
T ss_pred ccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEE--Ee
Confidence 2366788999999998777 9999999988776210 0011 136788888887789998 78
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCCh
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~ 278 (310)
|||++++|+.+++++|||+|++||+|++++||..+++.|..+++.++..
T Consensus 182 gGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr~a 230 (248)
T cd04728 182 AGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGRLA 230 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876543
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-13 Score=122.42 Aligned_cols=171 Identities=26% Similarity=0.359 Sum_probs=131.0
Q ss_pred HHHHHHHHcCCCEEEeC----CC-CCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh-----CCCEEE--EcCC--C
Q 021609 105 VEAQILEAIGIDYVDES----EV-LTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE-----GAAMIR--TKGE--A 169 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~----~~-~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~-----Gad~V~--v~g~--~ 169 (310)
...+.+.++|++.|..+ +. -....+.+.+...++. ++++.+|+|.+||.+.+++ |-++|+ |.+. .
T Consensus 25 ~~~~ai~asg~~ivTvalrR~~~~~~~~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~ 104 (250)
T PRK00208 25 VMQEAIEASGAEIVTVALRRVNLGQGGDNLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKT 104 (250)
T ss_pred HHHHHHHHhCCCeEEEEEEeecCCCCcchHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCC
Confidence 33456677888888411 11 1335677777655555 8999999999999987653 667877 3443 2
Q ss_pred CCcchHHHHHHHHhhccc-eEeecccChhHHHHhh------hccC------------CcHHHHHHHhhcCCCCEEEeCCC
Q 021609 170 GTGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTFA------KKIA------------APYDLVMQTKQLGRLPVVHFAAG 230 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~~------~~~~------------~~~~~i~~i~~~~~iPVi~iA~G 230 (310)
..+++.++++..+++... +.++|++.+|....-. .-.. ...+.++.+++..++||+ +.|
T Consensus 105 llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~~vpVI--vea 182 (250)
T PRK00208 105 LLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQADVPVI--VDA 182 (250)
T ss_pred CCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhcCCeEE--EeC
Confidence 266788999999998777 9999999888775210 0011 136778888887789998 789
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
||++++|+.+++++|||+|+|||+|++++||..+++.|..+++.++.
T Consensus 183 GI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr~ 229 (250)
T PRK00208 183 GIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGRL 229 (250)
T ss_pred CCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987654
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-13 Score=121.02 Aligned_cols=200 Identities=18% Similarity=0.216 Sum_probs=124.7
Q ss_pred CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 42 VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 42 ~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
..+| +.|+.+.+.|++++ +++++.. .....+.+.++++++.+++|+++...+...++++.+..+|++.|
T Consensus 29 ~~dp~~~a~~~~~~G~~~l~v~Dl~~~~--------~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~v 100 (254)
T TIGR00735 29 AGDPVELAQRYDEEGADELVFLDITASS--------EGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKV 100 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEcCCccc--------ccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 3466 89999999999998 4553221 11234588999999999999999888878899999999999999
Q ss_pred E-eCCCCCchhHHHHHHh-cCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhcc---ceEeec
Q 021609 119 D-ESEVLTPADEENHINK-HNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG---DIRVLR 192 (310)
Q Consensus 119 i-~~~~~~~~~~~~~i~~-~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~---~~~~l~ 192 (310)
+ ++..+..+++.+.+.. ++.+ +.+.+++...+.- ..+...|.+.+|..... .+..++++.+.. ..-.++
T Consensus 101 ivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~----~~~~~~v~i~gw~~~~~-~~~~~~~~~l~~~G~~~iivt 175 (254)
T TIGR00735 101 SINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVN----SYCWYEVYIYGGRESTG-LDAVEWAKEVEKLGAGEILLT 175 (254)
T ss_pred EEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCC----CCccEEEEEeCCcccCC-CCHHHHHHHHHHcCCCEEEEe
Confidence 6 5555554444444433 4323 5555554311000 00001233333321000 011122222111 111222
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDP 261 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp 261 (310)
..++++. ..++++++++++++..++||+ ++|||++++|+.+++..| +|+|++|++++...-+
T Consensus 176 ~i~~~g~-----~~g~~~~~~~~i~~~~~ipvi--a~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~ 238 (254)
T TIGR00735 176 SMDKDGT-----KSGYDLELTKAVSEAVKIPVI--ASGGAGKPEHFYEAFTKGKADAALAASVFHYREIT 238 (254)
T ss_pred CcCcccC-----CCCCCHHHHHHHHHhCCCCEE--EeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCC
Confidence 2222221 235668899999988899998 789999999999999887 9999999999974443
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=125.08 Aligned_cols=182 Identities=18% Similarity=0.245 Sum_probs=125.3
Q ss_pred CHHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHHhhcCcceeeccccC------cH
Q 021609 44 TPEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIKQSVTIPVMAKARIG------HF 104 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~------~~ 104 (310)
+.+.++.+.++|+|.+ +|. |. |..+++. .|.+....++.++++|+..++|+++....+ ..
T Consensus 18 ~~~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~ 96 (250)
T PLN02591 18 TAEALRLLDACGADVI-ELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGID 96 (250)
T ss_pred HHHHHHHHHHCCCCEE-EECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHH
Confidence 3467889999999976 664 21 2222222 255444567888888877899988765443 34
Q ss_pred HHHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHH-HHHHHHhCCCEEEEcCCCC-CcchHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGE-ALRRIREGAAMIRTKGEAG-TGNIIEAVRH 180 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~e-a~~~~~~Gad~V~v~g~~~-~~~~~~~~~~ 180 (310)
.+.+.+.++|+|+++.++.. +..++.+.+++++...+.+++.+|.++ .++..+....+|.+-+..+ ||. .
T Consensus 97 ~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~-~----- 170 (250)
T PLN02591 97 KFMATIKEAGVHGLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGA-R----- 170 (250)
T ss_pred HHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCC-C-----
Confidence 67899999999999988742 233555666667777777777666544 4555566556665433322 221 0
Q ss_pred HHhhccceEeecccChhHHHHhhhccCC-cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAA-PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
..... ..+.++.+++..++|++ .+.||++++|+.++++.|||||+|||+|++
T Consensus 171 -----------------------~~~~~~~~~~i~~vk~~~~~Pv~--vGFGI~~~e~v~~~~~~GADGvIVGSalVk 223 (250)
T PLN02591 171 -----------------------ASVSGRVESLLQELKEVTDKPVA--VGFGISKPEHAKQIAGWGADGVIVGSAMVK 223 (250)
T ss_pred -----------------------cCCchhHHHHHHHHHhcCCCceE--EeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 01111 24568888888899998 589999999999999999999999999987
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-14 Score=124.55 Aligned_cols=170 Identities=27% Similarity=0.386 Sum_probs=118.4
Q ss_pred HHHHHHHcCCCEEEeC----CC---CCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh-----CCCEEEE--cCCCC
Q 021609 106 EAQILEAIGIDYVDES----EV---LTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE-----GAAMIRT--KGEAG 170 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~----~~---~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~-----Gad~V~v--~g~~~ 170 (310)
..+.+.++|++.|..+ +. .....+.+.+...++. ++++.+|+|.+||.+.+++ |-++|++ ++...
T Consensus 24 m~~ai~aSg~evvTvalRR~~~~~~~~~~~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~ 103 (247)
T PF05690_consen 24 MREAIEASGAEVVTVALRRVNLGSKPGGDNILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDK 103 (247)
T ss_dssp HHHHHHHTT-SEEEEECCGSTTTS-TTCHHCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TT
T ss_pred HHHHHHHhCCcEEEEEEecccCCCCCCCccHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 3456677888888421 11 1234555666544555 7889999999999987653 7788884 45433
Q ss_pred --CcchHHHHHHHHhhccc-eEeecccChhHHHHh------h-------------hccCCcHHHHHHHhhcCCCCEEEeC
Q 021609 171 --TGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTF------A-------------KKIAAPYDLVMQTKQLGRLPVVHFA 228 (310)
Q Consensus 171 --~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~------~-------------~~~~~~~~~i~~i~~~~~iPVi~iA 228 (310)
.+++.+++++.+.+... |.++||+++|.++.. | ++.. +...++.+.+..++|||+
T Consensus 104 ~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlgsPIGSg~Gi~-n~~~l~~i~~~~~vPvIv-- 180 (247)
T PF05690_consen 104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLGSPIGSGRGIQ-NPYNLRIIIERADVPVIV-- 180 (247)
T ss_dssp T--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBSSSTTT---SS-THHHHHHHHHHGSSSBEE--
T ss_pred CcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecccccccCcCCC-CHHHHHHHHHhcCCcEEE--
Confidence 57888999999999888 999999999998731 0 1122 245677777777999994
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCCh
Q 021609 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~ 278 (310)
.+||.+++|+.+++++|||+|++.|+|.+++||..+++.|..+++.++..
T Consensus 181 DAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AGR~a 230 (247)
T PF05690_consen 181 DAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEAGRLA 230 (247)
T ss_dssp ES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999876543
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-12 Score=115.32 Aligned_cols=172 Identities=19% Similarity=0.215 Sum_probs=124.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc-cCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR-IGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~-~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++++.++|...+ ++ +... ....+.++++++.+..++.+.-. +-..++++.+.++|+++++.+..
T Consensus 26 ~~~~a~~~gGi~~i-Ev-------t~~~----~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~- 92 (206)
T PRK09140 26 AHVGALIEAGFRAI-EI-------PLNS----PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT- 92 (206)
T ss_pred HHHHHHHHCCCCEE-EE-------eCCC----ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC-
Confidence 57888899999976 55 2111 11256888888887655444322 12358899999999999974432
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..++.+... ..+++++++++|.+|+..+.+.|+||+++++..
T Consensus 93 -~~~v~~~~~--~~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa~----------------------------------- 134 (206)
T PRK09140 93 -DPEVIRRAV--ALGMVVMPGVATPTEAFAALRAGAQALKLFPAS----------------------------------- 134 (206)
T ss_pred -CHHHHHHHH--HCCCcEEcccCCHHHHHHHHHcCCCEEEECCCC-----------------------------------
Confidence 234444433 357889999999999999999999999985421
Q ss_pred ccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC----CCHHHHHHHHHHHHh
Q 021609 205 KIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS----GDPVKRAQAIVRAVT 273 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a----~dp~~~a~~l~~~i~ 273 (310)
....+.++.+++.. ++|++ +.||| +++++.+++++|++++.++|+|+++ +++...++++++.++
T Consensus 135 --~~G~~~l~~l~~~~~~~ipvv--aiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~~~~ 204 (206)
T PRK09140 135 --QLGPAGIKALRAVLPPDVPVF--AVGGV-TPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVAAYR 204 (206)
T ss_pred --CCCHHHHHHHHhhcCCCCeEE--EECCC-CHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHHHHh
Confidence 01244566666544 49998 56999 7999999999999999999999986 677777777766654
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.4e-13 Score=116.72 Aligned_cols=181 Identities=23% Similarity=0.280 Sum_probs=122.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHH---HHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKE---IKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~---i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~ 122 (310)
+.++.+.++|++++ +++ ....+ .....+.+++ ++..+++|+++. ++++.+.++|+|+|+.+.
T Consensus 25 ~~~~~~~~~gv~~v-~lr-------~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~a~~~gad~vh~~~ 89 (212)
T PRK00043 25 EVVEAALEGGVTLV-QLR-------EKGLD-TRERLELARALKELCRRYGVPLIVN------DRVDLALAVGADGVHLGQ 89 (212)
T ss_pred HHHHHHHhcCCCEE-EEe-------CCCCC-HHHHHHHHHHHHHHHHHhCCeEEEe------ChHHHHHHcCCCEEecCc
Confidence 56778889999987 663 11000 0001223333 334567888764 356778899999996433
Q ss_pred -CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHH
Q 021609 123 -VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 123 -~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~ 201 (310)
........ . ..+.+..++++++|.+++.++.+.|+|+|.+++...+. +...
T Consensus 90 ~~~~~~~~~-~--~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~----------------------~~~~--- 141 (212)
T PRK00043 90 DDLPVADAR-A--LLGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTP----------------------TKKD--- 141 (212)
T ss_pred ccCCHHHHH-H--HcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCC----------------------CCCC---
Confidence 22222221 1 13466788899999999999999999999876432111 1000
Q ss_pred hhhccCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 202 FAKKIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 202 ~~~~~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
......++.++++++..+ +||+ +.||| +++++.+++++|++++++||+|++++||...++++.+.++.
T Consensus 142 --~~~~~g~~~~~~~~~~~~~~~v~--a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~ 210 (212)
T PRK00043 142 --AKAPQGLEGLREIRAAVGDIPIV--AIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRA 210 (212)
T ss_pred --CCCCCCHHHHHHHHHhcCCCCEE--EECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhh
Confidence 000112677777776655 9998 67999 69999999999999999999999999999888888776653
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-13 Score=119.42 Aligned_cols=170 Identities=19% Similarity=0.295 Sum_probs=131.5
Q ss_pred HHHHHHHcCCCEEE----eCC-C--CCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHH----h-------CCCEEE--
Q 021609 106 EAQILEAIGIDYVD----ESE-V--LTPADEENHINKHNFR-IPFVCGCRNLGEALRRIR----E-------GAAMIR-- 164 (310)
Q Consensus 106 ~a~~~~~aGad~Vi----~~~-~--~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~----~-------Gad~V~-- 164 (310)
..+.+.++|++.|. ..+ . .....+.+.+...+.. ++++.+|+|.+||.+.++ + +-++|+
T Consensus 32 ~~~ai~aSg~evvTvalRR~~~~~~~~~~~~l~~i~~~~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLE 111 (267)
T CHL00162 32 AIQSIEASGCEIVTVAIRRLNNNLLNDNSNLLNGLDWNKLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLE 111 (267)
T ss_pred HHHHHHHhCCcEEEEEEEEeccCcCCCcchHHHhhchhccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEE
Confidence 34566778888884 112 1 1235677777655555 899999999999988653 3 357877
Q ss_pred EcCC--CCCcchHHHHHHHHhhccc-eEeecccChhHHHHh------h-------------hccCCcHHHHHHHhhcCCC
Q 021609 165 TKGE--AGTGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTF------A-------------KKIAAPYDLVMQTKQLGRL 222 (310)
Q Consensus 165 v~g~--~~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~------~-------------~~~~~~~~~i~~i~~~~~i 222 (310)
|.+. ...+++.+++++.+.+... |.++||+++|.++.. | ++. .....++.+.+..++
T Consensus 112 Vi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl-~n~~~l~~i~e~~~v 190 (267)
T CHL00162 112 VISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGL-QNLLNLQIIIENAKI 190 (267)
T ss_pred EeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCC-CCHHHHHHHHHcCCC
Confidence 4442 3477888999999999988 999999999998731 0 111 124567888887889
Q ss_pred CEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCCh
Q 021609 223 PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278 (310)
Q Consensus 223 PVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~ 278 (310)
||+ ..+||++++|+.+++++|||||++.|+|++++||..+++.|..+++.++..
T Consensus 191 pVi--vdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AGR~A 244 (267)
T CHL00162 191 PVI--IDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAGRLA 244 (267)
T ss_pred cEE--EeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHHHHH
Confidence 999 469999999999999999999999999999999999999999999876543
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-12 Score=116.26 Aligned_cols=174 Identities=18% Similarity=0.248 Sum_probs=122.9
Q ss_pred CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 42 VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 42 ~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
..+| ++|+.+.+.|++++ .+|+. .+.....+.+.++++++.+++|+++...+...++++.+.+.|++.|
T Consensus 29 ~~dp~~~a~~~~~~g~~~i~i~dl~~--------~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~v 100 (232)
T TIGR03572 29 IGDPVNAARIYNAKGADELIVLDIDA--------SKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKV 100 (232)
T ss_pred CCCHHHHHHHHHHcCCCEEEEEeCCC--------cccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 3466 78999999999988 34531 1111235688999999999999999887777788888999999999
Q ss_pred E-eCCCCCchhHHHHHHh-cCCC-CcEEEecCC----------------------HHHHHHHHHhCCCEEEEcCCCCCcc
Q 021609 119 D-ESEVLTPADEENHINK-HNFR-IPFVCGCRN----------------------LGEALRRIREGAAMIRTKGEAGTGN 173 (310)
Q Consensus 119 i-~~~~~~~~~~~~~i~~-~~~~-i~~~v~~~t----------------------~~ea~~~~~~Gad~V~v~g~~~~~~ 173 (310)
+ .+..++..++.+.+.+ ++.. +.+.+++.. .+.++++.+.|++.+.+++....+.
T Consensus 101 ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~ 180 (232)
T TIGR03572 101 SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGT 180 (232)
T ss_pred EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 6 5555555555444433 3322 444444322 2444556667777777765321110
Q ss_pred hHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH-HHHcCCCEEEEc
Q 021609 174 IIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM-MMQLGCDGVFVG 252 (310)
Q Consensus 174 ~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~-~l~~GadgV~VG 252 (310)
..++++++++++++..++||+ ++|||++++|+.+ +...|||+|++|
T Consensus 181 -------------------------------~~g~~~~~~~~i~~~~~ipvi--a~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 181 -------------------------------MKGYDLELIKTVSDAVSIPVI--ALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred -------------------------------cCCCCHHHHHHHHhhCCCCEE--EECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 134568899999988899998 7899999999999 668999999999
Q ss_pred cccc
Q 021609 253 SGVF 256 (310)
Q Consensus 253 sai~ 256 (310)
++|-
T Consensus 228 ~a~h 231 (232)
T TIGR03572 228 SLFH 231 (232)
T ss_pred hhhh
Confidence 9873
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-13 Score=131.28 Aligned_cols=216 Identities=16% Similarity=0.190 Sum_probs=146.5
Q ss_pred cccccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcH---------
Q 021609 37 GVIMDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHF--------- 104 (310)
Q Consensus 37 g~i~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~--------- 104 (310)
..+.++.+| ++|+.|.+.|||+| ++|+... . +-.....+.+.++++.+.+.+|+.+...+...
T Consensus 261 ~~~~~~gdPve~a~~y~~~Gadel~~~Di~~~~----~-~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~ 335 (538)
T PLN02617 261 REVRNLGKPVELAGQYYKDGADEVAFLNITGFR----D-FPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYS 335 (538)
T ss_pred cCCCcCCCHHHHHHHHHHcCCCEEEEEECCCCc----C-CcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccc
Confidence 346677788 89999999999998 4553110 0 00001233789999999999999998777653
Q ss_pred --HHHHHHHHcCCCEEE-eCCCCCc------------hhHHHHHHh-cCCC-CcEEEecCCHH--H-------HHHHHH-
Q 021609 105 --VEAQILEAIGIDYVD-ESEVLTP------------ADEENHINK-HNFR-IPFVCGCRNLG--E-------ALRRIR- 157 (310)
Q Consensus 105 --~~a~~~~~aGad~Vi-~~~~~~~------------~~~~~~i~~-~~~~-i~~~v~~~t~~--e-------a~~~~~- 157 (310)
++++.++.+|||.|+ .+.++.. +++++.+.+ ++.. +.+.+|++... + -.++..
T Consensus 336 ~~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~ 415 (538)
T PLN02617 336 SLEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNP 415 (538)
T ss_pred hHHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCcccccccccccccc
Confidence 678999999999995 5544432 355555444 5444 55555654220 0 000000
Q ss_pred --hCC----CEEEEcCCCC-CcchHHHHHHHHhhccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEe
Q 021609 158 --EGA----AMIRTKGEAG-TGNIIEAVRHVRSVMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHF 227 (310)
Q Consensus 158 --~Ga----d~V~v~g~~~-~~~~~~~~~~~r~~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~i 227 (310)
.|- ..+.++||.. ++ .++.++++++... .-++++++.|++ ..++++++++.+++.+++|||
T Consensus 416 ~~~~~~~~~~~v~~~gg~~~~~--~~~~~~~~~~~~~Gageil~t~id~DGt-----~~G~d~~l~~~v~~~~~ipvi-- 486 (538)
T PLN02617 416 GPNGEEYAWYQCTVKGGREGRP--IGAYELAKAVEELGAGEILLNCIDCDGQ-----GKGFDIELVKLVSDAVTIPVI-- 486 (538)
T ss_pred CcCcccceEEEEEEecCcccCC--CCHHHHHHHHHhcCCCEEEEeecccccc-----ccCcCHHHHHHHHhhCCCCEE--
Confidence 111 2377888753 33 3466666665444 667777887775 257789999999998999998
Q ss_pred CCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHH
Q 021609 228 AAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 228 A~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~a~ 266 (310)
|+||+.+++|+.+++. .|+|+++.++.|...+.+....+
T Consensus 487 asGG~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k 526 (538)
T PLN02617 487 ASSGAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVK 526 (538)
T ss_pred EECCCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHH
Confidence 8999999999999996 67999999999988665544333
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=116.27 Aligned_cols=202 Identities=17% Similarity=0.232 Sum_probs=134.8
Q ss_pred eecchhhhhhCcccccCC---CH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecc
Q 021609 26 VKVGLAQMLRGGVIMDVV---TP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKA 99 (310)
Q Consensus 26 ~~~~~~~~~~~g~i~~~~---~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~ 99 (310)
++.|.++++.+|...... +| ++|+.|.+. ++++ ++++.. ..| ...+.+.++++.+.+++|+++..
T Consensus 10 ~~~G~vVr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~ivDldga------~~g--~~~n~~~i~~i~~~~~~pv~~gG 80 (228)
T PRK04128 10 LMNGKAVRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHVVDLDGA------FEG--KPKNLDVVKNIIRETGLKVQVGG 80 (228)
T ss_pred eECCEEEEEEeccccCceECCCHHHHHHHHHHh-CCEEEEEECcch------hcC--CcchHHHHHHHHhhCCCCEEEcC
Confidence 345555555566533322 66 788999887 9987 455311 111 12458899999988999999998
Q ss_pred ccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCC-Cc-chHH
Q 021609 100 RIGHFVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG-TG-NIIE 176 (310)
Q Consensus 100 ~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~-~~-~~~~ 176 (310)
.+...++++.+.+.|++.++ ++...++.-+.+..++++ ++.+.+|.+.. .+.+.||.. ++ .+.+
T Consensus 81 GIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~~g-~ivvslD~~~g------------~v~~~gw~~~~~~~~~~ 147 (228)
T PRK04128 81 GLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSEFE-GITVSLDVKGG------------RIAVKGWLEESSIKVED 147 (228)
T ss_pred CCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHHcC-CEEEEEEccCC------------eEecCCCeEcCCCCHHH
Confidence 88888999999999999986 666664444444444443 35555555332 455667632 22 3345
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
..++..+. ...-+++++++|+++ .+++ ++.+. ..++||+ ++|||++.+|+.++...|++||++|++|+
T Consensus 148 ~~~~~~~~-~~~ii~t~i~~dGt~-----~G~d-~l~~~---~~~~pvi--asGGv~~~~Dl~~l~~~g~~gvivg~al~ 215 (228)
T PRK04128 148 AYEMLKNY-VNRFIYTSIERDGTL-----TGIE-EIERF---WGDEEFI--YAGGVSSAEDVKKLAEIGFSGVIIGKALY 215 (228)
T ss_pred HHHHHHHH-hCEEEEEeccchhcc-----cCHH-HHHHh---cCCCCEE--EECCCCCHHHHHHHHHCCCCEEEEEhhhh
Confidence 55666555 334577777777653 2333 33222 2478998 89999999999999999999999999999
Q ss_pred cCCCH
Q 021609 257 KSGDP 261 (310)
Q Consensus 257 ~a~dp 261 (310)
...-+
T Consensus 216 ~g~~~ 220 (228)
T PRK04128 216 EGRIS 220 (228)
T ss_pred cCCcC
Confidence 75433
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=129.25 Aligned_cols=152 Identities=25% Similarity=0.324 Sum_probs=110.4
Q ss_pred HHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 47 QARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.|+.+.+.|+++| +|| |+++..+...|+.++++++.+.++ ++++++|+.+|.+.++...
T Consensus 82 aa~~~~~~g~d~I-dlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~------------- 147 (321)
T PRK10415 82 AARINVESGAQII-DINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPE------------- 147 (321)
T ss_pred HHHHHHHCCCCEE-EEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCC-------------
Confidence 4666677899986 998 666666777799999988877765 5557899999998774210
Q ss_pred eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
..+. .+-+..+.+.|++.+.+|++...+.
T Consensus 148 ------~~~~-------------------~~~a~~le~~G~d~i~vh~rt~~~~-------------------------- 176 (321)
T PRK10415 148 ------HRNC-------------------VEIAQLAEDCGIQALTIHGRTRACL-------------------------- 176 (321)
T ss_pred ------cchH-------------------HHHHHHHHHhCCCEEEEecCccccc--------------------------
Confidence 0011 1224456678999999998642110
Q ss_pred HHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 200 FTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.....+++.++++++.+++||+ ++|||.|++|+.++++ .|||+|++|++++. ||+... ++.+.+
T Consensus 177 ----~~G~a~~~~i~~ik~~~~iPVI--~nGgI~s~~da~~~l~~~gadgVmiGR~~l~--nP~if~-~~~~~~ 241 (321)
T PRK10415 177 ----FNGEAEYDSIRAVKQKVSIPVI--ANGDITDPLKARAVLDYTGADALMIGRAAQG--RPWIFR-EIQHYL 241 (321)
T ss_pred ----cCCCcChHHHHHHHHhcCCcEE--EeCCCCCHHHHHHHHhccCCCEEEEChHhhc--CChHHH-HHHHHH
Confidence 0123568899999988899998 7999999999999996 79999999999997 787433 244433
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.8e-13 Score=124.00 Aligned_cols=200 Identities=18% Similarity=0.193 Sum_probs=129.0
Q ss_pred eccCc-ceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 19 TKKSP-FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 19 ~~~~~-~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
++... ++++.|++. +.+.+++++++|.++.++|.-+++..+-.+ ....+.+++++....+...+
T Consensus 25 t~l~~~~~l~~Piv~----apM~~vt~~~ma~ava~~GglGvi~~~~~~-----------~~~~~~i~~vk~~l~v~~~~ 89 (325)
T cd00381 25 TKLTKNITLNIPLVS----APMDTVTESEMAIAMARLGGIGVIHRNMSI-----------EEQAEEVRKVKGRLLVGAAV 89 (325)
T ss_pred EEecCccccCCCEEe----cCCCcCCcHHHHHHHHHCCCEEEEeCCCCH-----------HHHHHHHHHhccCceEEEec
Confidence 34433 888999988 778889999999999999988774432000 00123444444322222221
Q ss_pred ccccCcHHHHHHHHHcCCCEEEe--CCCC--CchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCc
Q 021609 98 KARIGHFVEAQILEAIGIDYVDE--SEVL--TPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTG 172 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi~--~~~~--~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~ 172 (310)
.......+.++.+.++|+|.+.. +..- ...+.++.+++..+++++++ .+.|.++++.+.++|+|+|.++...++.
T Consensus 90 ~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~ 169 (325)
T cd00381 90 GTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSI 169 (325)
T ss_pred CCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcC
Confidence 11112346788899999999852 2222 23455666655445577776 5889999999999999999986432211
Q ss_pred chHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 173 NIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 173 ~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
. .. +.... ...+.+..+..+.+. .++||+ ++|||.++.|+.+++.+|||+|
T Consensus 170 ~--~t-----------~~~~g-----------~g~p~~~~i~~v~~~~~~~~vpVI--A~GGI~~~~di~kAla~GA~~V 223 (325)
T cd00381 170 C--TT-----------RIVTG-----------VGVPQATAVADVAAAARDYGVPVI--ADGGIRTSGDIVKALAAGADAV 223 (325)
T ss_pred c--cc-----------ceeCC-----------CCCCHHHHHHHHHHHHhhcCCcEE--ecCCCCCHHHHHHHHHcCCCEE
Confidence 1 00 01000 012334445544433 369998 8999999999999999999999
Q ss_pred EEccccccCC
Q 021609 250 FVGSGVFKSG 259 (310)
Q Consensus 250 ~VGsai~~a~ 259 (310)
++||.|..++
T Consensus 224 miGt~fa~t~ 233 (325)
T cd00381 224 MLGSLLAGTD 233 (325)
T ss_pred Eecchhcccc
Confidence 9999999854
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.1e-13 Score=122.37 Aligned_cols=182 Identities=12% Similarity=0.155 Sum_probs=124.3
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHHhhcCcceeeccccC------cHH
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIKQSVTIPVMAKARIG------HFV 105 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~------~~~ 105 (310)
.+.++.+.++|||.+ +|. |. |..+++. +|.+....++.++++|+..++|+++....+ ...
T Consensus 32 ~~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~ 110 (263)
T CHL00200 32 KKALKILDKKGADII-ELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINK 110 (263)
T ss_pred HHHHHHHHHCCCCEE-EECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHH
Confidence 367889999999976 664 21 2222222 345444557888888877899987765443 346
Q ss_pred HHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHH-HHHhCCCEEEEcCC-CCCcchHHHHHHH
Q 021609 106 EAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGEALR-RIREGAAMIRTKGE-AGTGNIIEAVRHV 181 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~-~~~~Gad~V~v~g~-~~~~~~~~~~~~~ 181 (310)
+++.+.++|+|+++.++.. +..++.+.+++++.....++..+|.++..+ ..+..-.+|.+-.. +.||. .
T Consensus 111 F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~-~------ 183 (263)
T CHL00200 111 FIKKISQAGVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGL-K------ 183 (263)
T ss_pred HHHHHHHcCCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCC-C------
Confidence 7899999999999887742 344556677777777777888777655554 44443346554222 22331 0
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
... ...-.+.++.+++.+++|+. ..+||++++++.++...|||||+|||+|++
T Consensus 184 ----------~~~-----------~~~~~~~i~~ir~~t~~Pi~--vGFGI~~~e~~~~~~~~GADGvVVGSalv~ 236 (263)
T CHL00200 184 ----------TEL-----------DKKLKKLIETIKKMTNKPII--LGFGISTSEQIKQIKGWNINGIVIGSACVQ 236 (263)
T ss_pred ----------ccc-----------cHHHHHHHHHHHHhcCCCEE--EECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 000 01124567778888899998 589999999999999999999999999964
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=124.77 Aligned_cols=196 Identities=14% Similarity=0.184 Sum_probs=128.3
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-----------
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS----------- 90 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~----------- 90 (310)
..|++..|+++ +.+.+++++++|.++.++|.-+++..+-.+.++ .+.++++++.
T Consensus 37 ~~l~l~iPIvs----ApMd~Vt~~~lA~AvA~aGGlGvI~~~~~~e~l-----------~~eI~~vk~~~~~~~i~~~~d 101 (404)
T PRK06843 37 KNISLNIPFLS----SAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQ-----------RKEIEKVKTYKFQKTINTNGD 101 (404)
T ss_pred hccCCCCCEec----CCCCCCCCHHHHHHHHHCCCEEEecCCCCHHHH-----------HHHHHHHHhhcCCCceeeccc
Confidence 57888999998 667889999999999999988875543111111 1122222211
Q ss_pred ---------------------------cCcce---------ee--ccccC--cHHHHHHHHHcCCCEEE--eCCC--CCc
Q 021609 91 ---------------------------VTIPV---------MA--KARIG--HFVEAQILEAIGIDYVD--ESEV--LTP 126 (310)
Q Consensus 91 ---------------------------~~iPv---------~v--k~~~~--~~~~a~~~~~aGad~Vi--~~~~--~~~ 126 (310)
-..|- .+ -.... ..+.++.+.++|+|.|. .++. ...
T Consensus 102 ~~~~~~~~~t~~~~~~~~~~~~d~~~~~~~~~a~~d~~~~l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~ 181 (404)
T PRK06843 102 TNEQKPEIFTAKQHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRI 181 (404)
T ss_pred ccccchhheeccccchHHHHHhhhhhhhhcchhhhhhhcCeEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhH
Confidence 11121 11 11111 23678999999999995 4443 345
Q ss_pred hhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+..+.++++.+++.+++ .+.|.++++.+.++|+|+|.+. .+. +.+++. +.+...
T Consensus 182 ~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG-~g~-Gs~c~t-----------r~~~g~----------- 237 (404)
T PRK06843 182 IELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVG-IGP-GSICTT-----------RIVAGV----------- 237 (404)
T ss_pred HHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEEC-CCC-CcCCcc-----------eeecCC-----------
Confidence 566777766556776655 7999999999999999999873 221 111110 111111
Q ss_pred cCCcHHHH---HHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLV---MQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i---~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
..+.+..+ .++.+..++||| |.|||+++.|+.+++.+||++|++|++|..+
T Consensus 238 g~p~ltai~~v~~~~~~~~vpVI--AdGGI~~~~Di~KALalGA~aVmvGs~~agt 291 (404)
T PRK06843 238 GVPQITAICDVYEVCKNTNICII--ADGGIRFSGDVVKAIAAGADSVMIGNLFAGT 291 (404)
T ss_pred CCChHHHHHHHHHHHhhcCCeEE--EeCCCCCHHHHHHHHHcCCCEEEEcceeeee
Confidence 01223333 444444579998 8999999999999999999999999999984
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-12 Score=114.31 Aligned_cols=191 Identities=15% Similarity=0.156 Sum_probs=121.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE--eC-
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD--ES- 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi--~~- 121 (310)
+.++.+.++|++++ +++-.. ..+. .+..-.++.++.+++.++.|+.+...+. ..+.++.+.++|||+|+ ..
T Consensus 24 ~~l~~~~~~g~~~i-hld~~d---~~f~-~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q 98 (229)
T PLN02334 24 EEAKRVLDAGADWL-HVDVMD---GHFV-PNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQ 98 (229)
T ss_pred HHHHHHHHcCCCEE-EEeccc---CCcC-CccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeecc
Confidence 57888899999987 774110 0000 0011114788888887777766655542 24667888999999994 22
Q ss_pred -CCCCchhHHHHHHhcCCCCcEEEecC--CHHHHHHHH-HhC-CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 122 -EVLTPADEENHINKHNFRIPFVCGCR--NLGEALRRI-REG-AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 122 -~~~~~~~~~~~i~~~~~~i~~~v~~~--t~~ea~~~~-~~G-ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
..-.+....+.++ +.++.++++++ |..+..+.. +.| +|++.+.+- .++.+.
T Consensus 99 ~~~d~~~~~~~~i~--~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v----------------------~pg~~~ 154 (229)
T PLN02334 99 ASTIHLHRLIQQIK--SAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSV----------------------EPGFGG 154 (229)
T ss_pred ccchhHHHHHHHHH--HCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEE----------------------ecCCCc
Confidence 1112333333333 35667777775 555555544 443 999865421 111111
Q ss_pred hHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
. +......+.++++++. .++|+. +.||| +++++.++.++|+|++++||+|++++||...+++|++.+++
T Consensus 155 ~------~~~~~~~~~i~~~~~~~~~~~I~--a~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~ 224 (229)
T PLN02334 155 Q------SFIPSMMDKVRALRKKYPELDIE--VDGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEK 224 (229)
T ss_pred c------ccCHHHHHHHHHHHHhCCCCcEE--EeCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence 0 0011124556666654 457888 56999 79999999999999999999999999999999988877654
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.3e-13 Score=120.52 Aligned_cols=180 Identities=23% Similarity=0.270 Sum_probs=120.4
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---cccccc-----cCCCCCCCCHHHHHHHHhh-cCcceeeccccCc------H
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRS-----QGGVARMSDPQLIKEIKQS-VTIPVMAKARIGH------F 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~-----~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~~------~ 104 (310)
.+.++++.++|||.| +|. |. |..+++ .+|.+....++.++++++. +++|+......+. .
T Consensus 27 ~~~~~~l~~~Gad~i-ElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e 105 (256)
T TIGR00262 27 LEIIKTLIEAGADAL-ELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVE 105 (256)
T ss_pred HHHHHHHHHcCCCEE-EECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHH
Confidence 367889999999987 664 21 222222 1355555567888999876 7999876544432 5
Q ss_pred HHHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCC-HHHHHHHHHh--CCCEEE-EcCCCCCcchHHHH
Q 021609 105 VEAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRN-LGEALRRIRE--GAAMIR-TKGEAGTGNIIEAV 178 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t-~~ea~~~~~~--Gad~V~-v~g~~~~~~~~~~~ 178 (310)
.+++.+.++|+|+++.++.. +..++.+.+++++.....++..+| .+.+....+. |.-|+. +.| .||.-
T Consensus 106 ~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G--~TG~~---- 179 (256)
T TIGR00262 106 EFYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAG--VTGAR---- 179 (256)
T ss_pred HHHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCC--CCCCc----
Confidence 66899999999999877642 234556666666666555566555 4444444444 343432 232 23310
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.. -.....+.++++++..+.|++ ..|||+|++++.++.+.|||+|+|||+|++
T Consensus 180 -------------~~-----------~~~~~~~~i~~lr~~~~~pi~--vgfGI~~~e~~~~~~~~GADgvVvGSaiv~ 232 (256)
T TIGR00262 180 -------------NR-----------AASALNELVKRLKAYSAKPVL--VGFGISKPEQVKQAIDAGADGVIVGSAIVK 232 (256)
T ss_pred -------------cc-----------CChhHHHHHHHHHhhcCCCEE--EeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 00 012236778888887788988 689999999999999999999999999996
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=114.17 Aligned_cols=175 Identities=22% Similarity=0.291 Sum_probs=117.9
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEe-CC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE-SE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~-~~ 122 (310)
+....+.+.|++++ +|. .+.-+. .......+..+++..+.|+++++ +++.+.+.|+|+|.. ..
T Consensus 17 ~~~~~~~~~g~~~v-~lR-------~~~~~~~~~~~~~~~l~~~~~~~~~~l~i~~------~~~la~~~g~~GvHl~~~ 82 (196)
T TIGR00693 17 NRVEAALKGGVTLV-QLR-------DKGSNTRERLALAEKLQELCRRYGVPFIVND------RVDLALALGADGVHLGQD 82 (196)
T ss_pred HHHHHHHhcCCCEE-EEe-------cCCCCHHHHHHHHHHHHHHHHHhCCeEEEEC------HHHHHHHcCCCEEecCcc
Confidence 55667888999876 763 221010 01112334444556688988755 356788999999964 33
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
.+......+. .+.+..+.+++|+.+++.++.+.|+||+.+.... ++.++.+
T Consensus 83 ~~~~~~~r~~---~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~----------------------~t~~k~~---- 133 (196)
T TIGR00693 83 DLPASEARAL---LGPDKIIGVSTHNLEELAEAEAEGADYIGFGPIF----------------------PTPTKKD---- 133 (196)
T ss_pred cCCHHHHHHh---cCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCcc----------------------CCCCCCC----
Confidence 3443333333 2356789999999999999999999999875321 1111100
Q ss_pred hhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 021609 203 AKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQA 267 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~ 267 (310)
......++.++++.+. .++||+ +.||| +++++.+++++|+++|++|++|++++||...+++
T Consensus 134 -~~~~~g~~~l~~~~~~~~~~pv~--a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~ 195 (196)
T TIGR00693 134 -PAPPAGVELLREIAATSIDIPIV--AIGGI-TLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQ 195 (196)
T ss_pred -CCCCCCHHHHHHHHHhcCCCCEE--EECCc-CHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHh
Confidence 0011236677777654 358998 66999 6999999999999999999999999999877664
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=114.96 Aligned_cols=195 Identities=18% Similarity=0.247 Sum_probs=127.7
Q ss_pred eeecchhhhhhCccccc----------CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhc
Q 021609 25 SVKVGLAQMLRGGVIMD----------VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSV 91 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~----------~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~ 91 (310)
-++.|.++++.+|.... ..+| ++|+.|.+.|++++ +||+.. .+ ...+.+.++++.+.
T Consensus 8 Dl~~g~~Vr~~~G~~~~~~~~~~~~~~~~dP~~~a~~~~~~g~~~l~ivDLd~~------~~---~~~n~~~i~~i~~~- 77 (221)
T TIGR00734 8 DLKDGIAVAGKSGERESYPPLESVSRLSSSPDDAAKVIEEIGARFIYIADLDRI------VG---LGDNFSLLSKLSKR- 77 (221)
T ss_pred EeeCCEEEEccccCcccccccccceecCCCHHHHHHHHHHcCCCEEEEEEcccc------cC---CcchHHHHHHHHhh-
Confidence 34566677776665333 4576 78999999999998 577521 11 23458899999876
Q ss_pred CcceeeccccCcHHHHHHHHH--cCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCC
Q 021609 92 TIPVMAKARIGHFVEAQILEA--IGIDYVD-ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 92 ~iPv~vk~~~~~~~~a~~~~~--aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
+|+.+...+...++++.+.. .||+.|+ ++..++.+++.+.+. +.+.++.++. .+..++|
T Consensus 78 -~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~p~~l~~~~-----~vvslD~~~g------------~v~~~g~ 139 (221)
T TIGR00734 78 -VELIADCGVRSPEDLETLPFTLEFASRVVVATETLDITELLRECY-----TVVSLDFKEK------------FLDASGL 139 (221)
T ss_pred -CcEEEcCccCCHHHHHHHHhhhccceEEeecChhhCCHHHHHHhh-----hEEEEEeECC------------ccccccc
Confidence 49998887777777877754 3699995 777666555543321 2333343221 1112333
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
.. ...+..++....-. --++.+++.|++ ..++++++++++++..++|++ ++|||++++|+.++...|+|+
T Consensus 140 ~~--~~~~~~~~~~~~g~-~ii~tdI~~dGt-----~~G~d~eli~~i~~~~~~pvi--a~GGi~s~ed~~~l~~~Ga~~ 209 (221)
T TIGR00734 140 FE--SLEEVRDFLNSFDY-GLIVLDIHSVGT-----MKGPNLELLTKTLELSEHPVM--LGGGISGVEDLELLKEMGVSA 209 (221)
T ss_pred cc--cHHHHHHHHHhcCC-EEEEEECCcccc-----CCCCCHHHHHHHHhhCCCCEE--EeCCCCCHHHHHHHHHCCCCE
Confidence 21 11222232222111 234455565543 246779999999998899998 899999999999988999999
Q ss_pred EEEcccccc
Q 021609 249 VFVGSGVFK 257 (310)
Q Consensus 249 V~VGsai~~ 257 (310)
|++|++|+.
T Consensus 210 vivgsal~~ 218 (221)
T TIGR00734 210 VLVATAVHK 218 (221)
T ss_pred EEEhHHhhC
Confidence 999999985
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-12 Score=112.49 Aligned_cols=175 Identities=15% Similarity=0.204 Sum_probs=119.3
Q ss_pred HHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHcCCCEEE-eCCCCCch
Q 021609 51 AEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVLTPA 127 (310)
Q Consensus 51 ~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~ 127 (310)
..++|++++ +| |....+. ......++++.+.. ..++++++ +.+.+...|+|+|. ........
T Consensus 23 ~~~~g~~~i-ql-------R~k~~~~-~~~~~~~~~l~~~~~~~~~liin~------~~~la~~~~~~gvHl~~~~~~~~ 87 (201)
T PRK07695 23 QIHSEVDYI-HI-------REREKSA-KELYEGVESLLKKGVPASKLIIND------RVDIALLLNIHRVQLGYRSFSVR 87 (201)
T ss_pred HHhCCCCEE-EE-------cCCCCCH-HHHHHHHHHHHHhCCCCCeEEEEC------HHHHHHHcCCCEEEeCcccCCHH
Confidence 678899976 77 3322110 01123344444321 22355444 35678889999996 33333333
Q ss_pred hHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC
Q 021609 128 DEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA 207 (310)
Q Consensus 128 ~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~ 207 (310)
++++. .++..+++++++.+++.++.+.|+||+.++ +.+ ++.+..+ ...
T Consensus 88 ~~r~~----~~~~~ig~s~~s~e~a~~a~~~Gadyi~~g-~v~---------------------~t~~k~~------~~~ 135 (201)
T PRK07695 88 SVREK----FPYLHVGYSVHSLEEAIQAEKNGADYVVYG-HVF---------------------PTDCKKG------VPA 135 (201)
T ss_pred HHHHh----CCCCEEEEeCCCHHHHHHHHHcCCCEEEEC-CCC---------------------CCCCCCC------CCC
Confidence 33322 246778999999999999999999999753 221 1111100 012
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
..++.++++.+..++||+ +.||| +++++.+++++|+++|++||+|+.++||...++.+.+.+++|
T Consensus 136 ~g~~~l~~~~~~~~ipvi--a~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~~ 200 (201)
T PRK07695 136 RGLEELSDIARALSIPVI--AIGGI-TPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKKW 200 (201)
T ss_pred CCHHHHHHHHHhCCCCEE--EEcCC-CHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhhc
Confidence 236777888777789999 67999 899999999999999999999999999999999999988776
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.5e-14 Score=130.88 Aligned_cols=146 Identities=29% Similarity=0.458 Sum_probs=98.9
Q ss_pred HHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 47 QARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.|+.+.+.|+++| +|| |+++..+...|+.++++++.+.++ ++++++||.+|.++++.+.
T Consensus 71 aa~~~~~~~~~~I-DlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~------------- 136 (309)
T PF01207_consen 71 AAEIVAELGFDGI-DLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDS------------- 136 (309)
T ss_dssp HHHHHCCTT-SEE-EEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT---------------
T ss_pred HHHhhhccCCcEE-eccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccc-------------
Confidence 4555566699987 998 888888887899999999876665 6678999999999885311
Q ss_pred eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
..+.. +-++.+.+.|++.|.+|+++....
T Consensus 137 ------~~~~~-------------------~~~~~l~~~G~~~i~vH~Rt~~q~-------------------------- 165 (309)
T PF01207_consen 137 ------PEETI-------------------EFARILEDAGVSAITVHGRTRKQR-------------------------- 165 (309)
T ss_dssp ------CHHHH-------------------HHHHHHHHTT--EEEEECS-TTCC--------------------------
T ss_pred ------hhHHH-------------------HHHHHhhhcccceEEEecCchhhc--------------------------
Confidence 11121 235566788999999999853211
Q ss_pred HHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHH
Q 021609 200 FTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~a 265 (310)
....++|+.++++++..++||+ ++|||.|++|+.++++ .|+||||+|++.+. ||+...
T Consensus 166 ----~~~~a~w~~i~~i~~~~~ipvi--~NGdI~s~~d~~~~~~~tg~dgvMigRgal~--nP~lf~ 224 (309)
T PF01207_consen 166 ----YKGPADWEAIAEIKEALPIPVI--ANGDIFSPEDAERMLEQTGADGVMIGRGALG--NPWLFR 224 (309)
T ss_dssp ----CTS---HHHHHHCHHC-TSEEE--EESS--SHHHHHHHCCCH-SSEEEESHHHCC---CCHHC
T ss_pred ----CCcccchHHHHHHhhcccceeE--EcCccCCHHHHHHHHHhcCCcEEEEchhhhh--cCHHhh
Confidence 0235679999999998899998 8999999999999985 59999999999997 777554
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=122.89 Aligned_cols=146 Identities=26% Similarity=0.378 Sum_probs=108.1
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----Hhhc--CcceeeccccCcHHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSV--TIPVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~--~iPv~vk~~~~~~~~a~~~~~aGad 116 (310)
+.|+.+++.|+++| +|| |.++..+..+|+.++++++.+.++ ++++ ++||.+|.++++.+.
T Consensus 79 ~aA~~~~~~g~d~I-diN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~---------- 147 (312)
T PRK10550 79 ENAARAVELGSWGV-DLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSG---------- 147 (312)
T ss_pred HHHHHHHHcCCCEE-EEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCc----------
Confidence 45777888999986 888 666676766788888888766665 5556 499999999874110
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
.+. .+-+..+.+.|+|++.+|+++....
T Consensus 148 ----------~~~-------------------~~~a~~l~~~Gvd~i~Vh~Rt~~~~----------------------- 175 (312)
T PRK10550 148 ----------ERK-------------------FEIADAVQQAGATELVVHGRTKEDG----------------------- 175 (312)
T ss_pred ----------hHH-------------------HHHHHHHHhcCCCEEEECCCCCccC-----------------------
Confidence 011 1224556678999999998753110
Q ss_pred hHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHH
Q 021609 197 DEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 197 d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a 265 (310)
| ... ..++.++++++..++||+ ++|||.|++|+.+++ ..|||+|++|++++. ||+...
T Consensus 176 -----y--~g~~~~~~~i~~ik~~~~iPVi--~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~--nP~lf~ 235 (312)
T PRK10550 176 -----Y--RAEHINWQAIGEIRQRLTIPVI--ANGEIWDWQSAQQCMAITGCDAVMIGRGALN--IPNLSR 235 (312)
T ss_pred -----C--CCCcccHHHHHHHHhhcCCcEE--EeCCcCCHHHHHHHHhccCCCEEEEcHHhHh--CcHHHH
Confidence 0 112 257889999998899998 799999999999999 579999999999997 787443
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-12 Score=113.94 Aligned_cols=186 Identities=21% Similarity=0.261 Sum_probs=129.1
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-----C
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-----G 102 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-----~ 102 (310)
.|+++ +.+-.+++++.++.+.+.|+-+++.. +. .+.....+.++++++.++.|+.++... +
T Consensus 3 ~pi~~----a~m~g~~~~~~~~~~~~~G~ig~i~~-------~~---~~~~~~~~~~~~i~~~~~~~~~v~~i~~~~~~~ 68 (236)
T cd04730 3 YPIIQ----APMAGVSTPELAAAVSNAGGLGFIGA-------GY---LTPEALRAEIRKIRALTDKPFGVNLLVPSSNPD 68 (236)
T ss_pred CCEEC----CCCCCCCCHHHHHHHHhCCCccccCC-------CC---CCHHHHHHHHHHHHHhcCCCeEEeEecCCCCcC
Confidence 45555 44666789999999999996554321 00 000111345666666555566665443 2
Q ss_pred cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHH
Q 021609 103 HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR 182 (310)
Q Consensus 103 ~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r 182 (310)
..+.++.+.++|+|+|..... .+.++.+.+++ .++.++..+++.+++.++.+.|+|++.+++...+++..
T Consensus 69 ~~~~~~~~~~~g~d~v~l~~~-~~~~~~~~~~~--~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~~------- 138 (236)
T cd04730 69 FEALLEVALEEGVPVVSFSFG-PPAEVVERLKA--AGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHRG------- 138 (236)
T ss_pred HHHHHHHHHhCCCCEEEEcCC-CCHHHHHHHHH--cCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCCC-------
Confidence 345688999999999975554 45555555544 46778888889999999889999999887653222100
Q ss_pred hhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~d 260 (310)
. .....+++++++++..++|++ +.|||++++|+.+++..|+|+|++||+++++.+
T Consensus 139 ------------~---------~~~~~~~~i~~i~~~~~~Pvi--~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e 193 (236)
T cd04730 139 ------------T---------FDIGTFALVPEVRDAVDIPVI--AAGGIADGRGIAAALALGADGVQMGTRFLATEE 193 (236)
T ss_pred ------------c---------cccCHHHHHHHHHHHhCCCEE--EECCCCCHHHHHHHHHcCCcEEEEchhhhcCcc
Confidence 0 002346778888877789998 679999999999999999999999999998654
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.6e-13 Score=124.29 Aligned_cols=199 Identities=24% Similarity=0.291 Sum_probs=145.7
Q ss_pred eeccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 18 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
.+....|++++|++| |.+.+++++++|.+..++|.-+++..+..+. ....+.++++++.+..|...
T Consensus 5 ~~~~~~~~i~~PIiq----~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~----------e~l~~~i~~~~~~~~~p~~~ 70 (336)
T COG2070 5 TRFILLLGIKYPIIQ----GGMAGVSTPELAAAVSNAGGLGIIASGGLPA----------EQLRAEIRKIRALTDKPFVA 70 (336)
T ss_pred chhhcccCccCCeec----CCccccCcHHHHHHHhccCCccccccccCCH----------HHHHHHHHHHHHhcCCcchh
Confidence 344778999999999 4455599999999999999887643321110 11236777788777777322
Q ss_pred ccc----------------cCcHHHHHHHHHc-CCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCC
Q 021609 98 KAR----------------IGHFVEAQILEAI-GIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGA 160 (310)
Q Consensus 98 k~~----------------~~~~~~a~~~~~a-Gad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Ga 160 (310)
..+ -.+.+.++.+.+. |+-.+..+....+.+....++. .+..++..+.+..+++++.+.|+
T Consensus 71 ~~f~~~~~~v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~--~g~~v~~~v~~~~~A~~~~~~G~ 148 (336)
T COG2070 71 NNFGSAPAPVNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKA--AGIKVIHSVITVREALKAERAGA 148 (336)
T ss_pred cccccccccchhheecccccchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHH--cCCeEEEEeCCHHHHHHHHhCCC
Confidence 111 1123444555554 8888876666667778777765 67889999999999999999999
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAA 239 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d~~ 239 (310)
|.|...|...+||.. ... .......+++++.+..+ +||+ |+|||.+.+++.
T Consensus 149 d~vI~~g~eAGGH~g------------------~~~--------~~~~t~~Lv~ev~~~~~~iPVi--AAGGI~dg~~i~ 200 (336)
T COG2070 149 DAVIAQGAEAGGHRG------------------GVD--------LEVSTFALVPEVVDAVDGIPVI--AAGGIADGRGIA 200 (336)
T ss_pred CEEEecCCcCCCcCC------------------CCC--------CCccHHHHHHHHHHHhcCCCEE--EecCccChHHHH
Confidence 999988875555511 000 01233678999998888 9999 899999999999
Q ss_pred HHHHcCCCEEEEccccccCCC
Q 021609 240 MMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 240 ~~l~~GadgV~VGsai~~a~d 260 (310)
.++.+||++|.+||+|+-+..
T Consensus 201 AAlalGA~gVq~GT~Fl~t~E 221 (336)
T COG2070 201 AALALGADGVQMGTRFLATKE 221 (336)
T ss_pred HHHHhccHHHHhhhhhhcccc
Confidence 999999999999999998654
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=118.07 Aligned_cols=181 Identities=24% Similarity=0.322 Sum_probs=127.1
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---cccccc----c-CCCCCCCCHHHHHHHHhh-cCcceeeccccC------cH
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRS----Q-GGVARMSDPQLIKEIKQS-VTIPVMAKARIG------HF 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~----~-~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~------~~ 104 (310)
.+.++.+.++|||.| +|. |. |+.+++ . +|.+....++.++++++. .++|+++....+ ..
T Consensus 34 ~e~i~~L~~~GaD~i-ELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie 112 (265)
T COG0159 34 LEIIKTLVEAGADIL-ELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIE 112 (265)
T ss_pred HHHHHHHHhCCCCEE-EecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHH
Confidence 367888899999987 664 21 332222 2 266666778899999865 799999876554 24
Q ss_pred HHHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHHHH-HhCCCEEEEcCCCC-CcchHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGEALRRI-REGAAMIRTKGEAG-TGNIIEAVRH 180 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~-~~Gad~V~v~g~~~-~~~~~~~~~~ 180 (310)
.+++.+.++|+|+++.+|.. +..++...+++++...+.++..+|.++..+.. +..-.++..-+..+ ||.
T Consensus 113 ~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~------- 185 (265)
T COG0159 113 KFLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGA------- 185 (265)
T ss_pred HHHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCC-------
Confidence 66899999999999988752 34456677777888888888887776665544 44334443322211 221
Q ss_pred HHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+ . + ......++++++++..++|++ ...||++++++.++.+. ||||+|||+|++
T Consensus 186 -~-------~-~------------~~~~~~~~v~~vr~~~~~Pv~--vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 186 -R-------N-P------------VSADVKELVKRVRKYTDVPVL--VGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred -C-------c-c------------cchhHHHHHHHHHHhcCCCeE--EecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 0 0 0 001135678889998899998 68999999999999999 999999999996
|
|
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-13 Score=125.34 Aligned_cols=190 Identities=23% Similarity=0.253 Sum_probs=123.8
Q ss_pred HHHHHHHHcCCcEEEecc-CC-cccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc---HHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAVMALE-RV-PADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH---FVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~-~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad~Vi~ 120 (310)
+.++.++++|+++| +|| .+ +......+........+.++.+++.+++||++|..... .+.++.+.++|+|+++.
T Consensus 116 ~~a~~~~~~gad~i-ElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~ 194 (325)
T cd04739 116 DYARQIEEAGADAL-ELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVL 194 (325)
T ss_pred HHHHHHHhcCCCEE-EEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence 56888889999987 777 33 22222212111011236777888888999999987542 35667788888888853
Q ss_pred CCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHH
Q 021609 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 121 ~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~ 200 (310)
......... +..+. ..+ .+++.++..
T Consensus 195 ~nt~~~~~i---------------d~~~~-----------~~~--~~~glSG~~-------------------------- 220 (325)
T cd04739 195 FNRFYQPDI---------------DLETL-----------EVV--PNLLLSSPA-------------------------- 220 (325)
T ss_pred EcCcCCCCc---------------ccccc-----------cee--cCCCcCCcc--------------------------
Confidence 332100000 00000 000 011112210
Q ss_pred HhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhh
Q 021609 201 TFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEV 280 (310)
Q Consensus 201 ~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~ 280 (310)
.....++++.++++..++||+ +.|||.|++|+.+.+.+|||+|++||+++. ..|. ...++.+.+++|++.++
T Consensus 221 ----~~~~al~~v~~v~~~~~ipIi--g~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~-~gp~-~~~~i~~~L~~~l~~~g 292 (325)
T cd04739 221 ----EIRLPLRWIAILSGRVKASLA--ASGGVHDAEDVVKYLLAGADVVMTTSALLR-HGPD-YIGTLLAGLEAWMEEHG 292 (325)
T ss_pred ----chhHHHHHHHHHHcccCCCEE--EECCCCCHHHHHHHHHcCCCeeEEehhhhh-cCch-HHHHHHHHHHHHHHHcC
Confidence 001235667778777789998 789999999999999999999999999997 3454 66679999999999999
Q ss_pred hhhhhhhcccchhcccCcc
Q 021609 281 LAEVSCGLGEAMVGLNLSD 299 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~ 299 (310)
+.++++..|. |-..++++
T Consensus 293 ~~~i~e~~G~-~~~~~~~~ 310 (325)
T cd04739 293 YESVQQLRGS-MSQKNVPD 310 (325)
T ss_pred CCCHHHHhcc-cccccCCC
Confidence 9999999994 33334444
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=127.92 Aligned_cols=189 Identities=22% Similarity=0.257 Sum_probs=126.7
Q ss_pred HHHHHHHHcCCcEEEecc-CCcc-cccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCc---HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALE-RVPA-DIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGH---FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~-~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~---~~~a~~~~~aGad 116 (310)
+.|+.+++.|+++| +|| .+|. ......|+.+..+++.+.++ ++.+++||++|++.+. .+.++.++++|||
T Consensus 117 ~~a~~~~~~g~d~i-elN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gad 195 (420)
T PRK08318 117 EIAPLVEETGADGI-ELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGAD 195 (420)
T ss_pred HHHHHHHhcCCCEE-EEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCC
Confidence 46778888999987 888 4544 32233456666667665554 5567899999998652 3566888899999
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCC----CCcchHHHHHHHHhhccceEeec
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEA----GTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~----~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
+++..+.+..... ++..+. .+ .-.+|++. ++|..
T Consensus 196 gi~~~Nt~~~~~~--------------id~~~~--------~~--~p~~~~~~~~gg~SG~a------------------ 233 (420)
T PRK08318 196 AVSLINTINSITG--------------VDLDRM--------IP--MPIVNGKSSHGGYCGPA------------------ 233 (420)
T ss_pred EEEEecccCcccc--------------cccccc--------CC--CceecCCCCcccccchh------------------
Confidence 9963332111000 000000 00 00123221 11110
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcC---CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLG---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~---~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
...-.++++.++++.. ++||+ ++|||.|++|+.+.+.+|||+|+++|+++. .+| ...+++.
T Consensus 234 ------------~~p~~l~~v~~~~~~~~~~~ipIi--g~GGI~s~~da~e~i~aGA~~Vqi~ta~~~-~gp-~ii~~I~ 297 (420)
T PRK08318 234 ------------VKPIALNMVAEIARDPETRGLPIS--GIGGIETWRDAAEFILLGAGTVQVCTAAMQ-YGF-RIVEDMI 297 (420)
T ss_pred ------------hhHHHHHHHHHHHhccccCCCCEE--eecCcCCHHHHHHHHHhCCChheeeeeecc-CCc-hhHHHHH
Confidence 0011367788887765 79998 889999999999999999999999999997 344 5777799
Q ss_pred HHHhccCChhhhhhhhhhcccchh
Q 021609 270 RAVTHYSDPEVLAEVSCGLGEAMV 293 (310)
Q Consensus 270 ~~i~~~~~~~~~~~~~~~~~~~~~ 293 (310)
..+.++++..++.++++.+|.+..
T Consensus 298 ~~L~~~l~~~g~~si~e~iG~~~~ 321 (420)
T PRK08318 298 SGLSHYMDEKGFASLEDMVGLAVP 321 (420)
T ss_pred HHHHHHHHHcCcchHHHHhccccc
Confidence 999999998888899999986553
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.5e-13 Score=125.49 Aligned_cols=190 Identities=22% Similarity=0.254 Sum_probs=123.5
Q ss_pred HHHHHHHHcCCcEEEecc-CC-cccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc---HHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAVMALE-RV-PADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH---FVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~-~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad~Vi~ 120 (310)
+.++.++++|+++| +|| .+ |......++.......+.++++++.+++||++|...+. .+.++.+.++|+|+|..
T Consensus 118 ~~a~~~~~agad~i-elN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~ 196 (334)
T PRK07565 118 DYARQIEQAGADAL-ELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLVL 196 (334)
T ss_pred HHHHHHHHcCCCEE-EEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEE
Confidence 56788889999987 776 23 22222112111111246778888889999999977542 35567778888888853
Q ss_pred CCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHH
Q 021609 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 121 ~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~ 200 (310)
......... +.+... . ..+++.++..
T Consensus 197 ~n~~~~~~~------------------d~~~~~--------~--~~~~glsg~~-------------------------- 222 (334)
T PRK07565 197 FNRFYQPDI------------------DLETLE--------V--VPGLVLSTPA-------------------------- 222 (334)
T ss_pred ECCcCCCCc------------------Chhhcc--------c--ccCCCCCCch--------------------------
Confidence 322100000 000000 0 0011122110
Q ss_pred HhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhh
Q 021609 201 TFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEV 280 (310)
Q Consensus 201 ~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~ 280 (310)
.....++.+.++++..++||+ ++|||.|++|+.+++.+|||+|+++|+++. +.| ...+++.+.+++++...+
T Consensus 223 ----~~~~al~~v~~~~~~~~ipIi--g~GGI~s~~Da~e~l~aGA~~V~v~t~~~~-~g~-~~~~~i~~~L~~~l~~~g 294 (334)
T PRK07565 223 ----ELRLPLRWIAILSGRVGADLA--ATTGVHDAEDVIKMLLAGADVVMIASALLR-HGP-DYIGTILRGLEDWMERHG 294 (334)
T ss_pred ----hhhHHHHHHHHHHhhcCCCEE--EECCCCCHHHHHHHHHcCCCceeeehHHhh-hCc-HHHHHHHHHHHHHHHHcC
Confidence 001124567777777789998 789999999999999999999999999997 345 466779999999999999
Q ss_pred hhhhhhhcccchhcccCcc
Q 021609 281 LAEVSCGLGEAMVGLNLSD 299 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~ 299 (310)
+.++++..| .+.-.|..+
T Consensus 295 ~~~i~e~~g-~~~~~~~~~ 312 (334)
T PRK07565 295 YESLQQFRG-SMSQKNVPD 312 (334)
T ss_pred CCCHHHHhc-ccccccCCC
Confidence 999999999 454455555
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.8e-12 Score=110.49 Aligned_cols=168 Identities=25% Similarity=0.336 Sum_probs=128.6
Q ss_pred HHHHHHcCCCEEE----eCC--CCCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh-----CCCEEE--EcCC--CC
Q 021609 107 AQILEAIGIDYVD----ESE--VLTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE-----GAAMIR--TKGE--AG 170 (310)
Q Consensus 107 a~~~~~aGad~Vi----~~~--~~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~-----Gad~V~--v~g~--~~ 170 (310)
.+.+..+|.+.|. ..+ .-.-..+.+.+...++- +++..+|+|.+||.+.+++ +-++|+ |.+. ..
T Consensus 33 ~~av~asg~~ivTvAlRR~~~~~~~~~~~l~~l~~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tL 112 (262)
T COG2022 33 AEAVRASGSEIVTVALRRVNATRPGGDGILDLLIPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTL 112 (262)
T ss_pred HHHHHhcCCceEEEEEEeecccCCCcchHHHHhhhcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCccc
Confidence 4555667777763 111 11244566666665665 8999999999999887643 667877 3343 34
Q ss_pred CcchHHHHHHHHhhccc-eEeecccChhHHHHh------h-------------hccCCcHHHHHHHhhcCCCCEEEeCCC
Q 021609 171 TGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTF------A-------------KKIAAPYDLVMQTKQLGRLPVVHFAAG 230 (310)
Q Consensus 171 ~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~------~-------------~~~~~~~~~i~~i~~~~~iPVi~iA~G 230 (310)
.++..+++++.+.+.+. |.++||+++|+++.- | .+.. ....++.+.+..++|||+ ..
T Consensus 113 lPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIGSg~G~~-n~~~l~iiie~a~VPviV--DA 189 (262)
T COG2022 113 LPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIGSGLGLQ-NPYNLEIIIEEADVPVIV--DA 189 (262)
T ss_pred CCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHHhcCceEeccccccccCCcCcC-CHHHHHHHHHhCCCCEEE--eC
Confidence 77888999999998888 999999999998731 0 1111 234567777777999994 69
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
||.++.|+..++++|||+|++.++|.++.||..+|+.|..+++.++.
T Consensus 190 GiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~AGrl 236 (262)
T COG2022 190 GIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVEAGRL 236 (262)
T ss_pred CCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999987654
|
|
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=109.47 Aligned_cols=170 Identities=16% Similarity=0.239 Sum_probs=121.2
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC----cceeeccccCcHHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT----IPVMAKARIGHFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~----iPv~vk~~~~~~~~a~~~~~aGad~Vi~ 120 (310)
+.++++.++|...+ +-++ . ...++.++++++.+. +.+.+... -..++++.+.++|+++++.
T Consensus 29 ~~~~al~~~Gi~~iEit~~-------~------~~a~~~i~~l~~~~~~~p~~~vGaGTV-~~~~~~~~a~~aGA~Fivs 94 (213)
T PRK06552 29 KISLAVIKGGIKAIEVTYT-------N------PFASEVIKELVELYKDDPEVLIGAGTV-LDAVTARLAILAGAQFIVS 94 (213)
T ss_pred HHHHHHHHCCCCEEEEECC-------C------ccHHHHHHHHHHHcCCCCCeEEeeeeC-CCHHHHHHHHHcCCCEEEC
Confidence 46888899998876 2231 0 112678888887763 33333333 2458899999999999974
Q ss_pred CCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHH
Q 021609 121 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 121 ~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~ 200 (310)
+. -..++.+..+ ..+++++.+++|+.|+..+.+.|+|+|++++....
T Consensus 95 P~--~~~~v~~~~~--~~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~~----------------------------- 141 (213)
T PRK06552 95 PS--FNRETAKICN--LYQIPYLPGCMTVTEIVTALEAGSEIVKLFPGSTL----------------------------- 141 (213)
T ss_pred CC--CCHHHHHHHH--HcCCCEECCcCCHHHHHHHHHcCCCEEEECCcccC-----------------------------
Confidence 43 2455655554 36899999999999999999999999999753211
Q ss_pred HhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC------CCHHHHHHHHHHHHh
Q 021609 201 TFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS------GDPVKRAQAIVRAVT 273 (310)
Q Consensus 201 ~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a------~dp~~~a~~l~~~i~ 273 (310)
+ .+.++.++... ++|++ +.||| +++++.+++++|++++.+||.++.+ +++...++++.+.++
T Consensus 142 ------G--~~~ik~l~~~~p~ip~~--atGGI-~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 142 ------G--PSFIKAIKGPLPQVNVM--VTGGV-NLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred ------C--HHHHHHHhhhCCCCEEE--EECCC-CHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 1 33455555433 48998 67999 6999999999999999999999976 355556665555543
|
|
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.8e-12 Score=117.20 Aligned_cols=188 Identities=17% Similarity=0.187 Sum_probs=130.3
Q ss_pred ecchhhhhhCcccccCCC-HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeecccc---
Q 021609 27 KVGLAQMLRGGVIMDVVT-PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARI--- 101 (310)
Q Consensus 27 ~~~~~~~~~~g~i~~~~~-~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~--- 101 (310)
++|++| |.|.++++ +++|.++.++|+-+++.+...+.+ ..-+.++++++. ++.|+.++...
T Consensus 2 ~yPIiq----gpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e----------~l~~~i~~~~~l~tdkPfGVnl~~~~~ 67 (320)
T cd04743 2 RYPIVQ----GPMTRVSDVAEFAVAVAEGGGLPFIALALMRGE----------QVKALLEETAELLGDKPWGVGILGFVD 67 (320)
T ss_pred CCCEEC----CCcCCCCCcHHHHHHHHhCCccccCCCCCCCHH----------HHHHHHHHHHHhccCCCeEEEEeccCC
Confidence 588888 77889988 899999999998876444211100 012356666764 68899998632
Q ss_pred C--cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHH
Q 021609 102 G--HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVR 179 (310)
Q Consensus 102 ~--~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~ 179 (310)
. ..+.++.+.+.++..|+.+... |.. .+.++ ..++.++..+.|+.+++++.+.|+|.|.+.|+..+||+-
T Consensus 68 ~~~~~~~l~vi~e~~v~~V~~~~G~-P~~-~~~lk--~~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G---- 139 (320)
T cd04743 68 TELRAAQLAVVRAIKPTFALIAGGR-PDQ-ARALE--AIGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVG---- 139 (320)
T ss_pred CcchHHHHHHHHhcCCcEEEEcCCC-hHH-HHHHH--HCCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCC----
Confidence 1 2356788889999999755432 333 34444 357888889999999999999999999999886666521
Q ss_pred HHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh------hcCCCCEEEeCCCCCCCHHHHHHHHHcCC-------
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK------QLGRLPVVHFAAGGVATPADAAMMMQLGC------- 246 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~------~~~~iPVi~iA~GGI~t~~d~~~~l~~Ga------- 246 (310)
.++++ ......+..+. ...++||+ ++|||.+...+..++.+||
T Consensus 140 ----------~~~t~------------~L~~~v~~~l~~~~~~~~~~~iPVi--AAGGI~dgr~~aaalaLGA~~~~~Ga 195 (320)
T cd04743 140 ----------PRSSF------------VLWESAIDALLAANGPDKAGKIHLL--FAGGIHDERSAAMVSALAAPLAERGA 195 (320)
T ss_pred ----------CCCch------------hhHHHHHHHHHHhhcccccCCccEE--EEcCCCCHHHHHHHHHcCCccccccc
Confidence 00000 00011222222 11379998 7899999999999999998
Q ss_pred -CEEEEccccccCCC
Q 021609 247 -DGVFVGSGVFKSGD 260 (310)
Q Consensus 247 -dgV~VGsai~~a~d 260 (310)
+||.+||+|+-++.
T Consensus 196 ~~GV~mGTrFl~t~E 210 (320)
T cd04743 196 KVGVLMGTAYLFTEE 210 (320)
T ss_pred ccEEEEccHHhcchh
Confidence 89999999998543
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-11 Score=115.02 Aligned_cols=196 Identities=20% Similarity=0.281 Sum_probs=129.3
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc---------C
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV---------T 92 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~---------~ 92 (310)
..+....|++. ..+..++++++|+++.+.|..+++..|-..++ ..+.++++++.+ .
T Consensus 32 ~~~~l~iPivs----a~MDtVte~~mAiama~~Gglgvih~~~~~e~-----------q~~~v~~vK~~~~~a~~d~~~~ 96 (352)
T PF00478_consen 32 RNITLKIPIVS----APMDTVTESEMAIAMARLGGLGVIHRNMSIEE-----------QAEEVKKVKRYYPNASKDEKGR 96 (352)
T ss_dssp TSEEESSSEEE-----SSTTTSSHHHHHHHHHTTSEEEEESSSCHHH-----------HHHHHHHHHTHHTTHHBHTTSC
T ss_pred CCEeecCceEe----cCccccchHHHHHHHHHhcCCceecCCCCHHH-----------HHHHHhhhcccccccccccccc
Confidence 56667778887 66888999999999999998888666411111 134566665431 3
Q ss_pred cceeecccc--CcHHHHHHHHHcCCCEEE--eCCCCC--chhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEE
Q 021609 93 IPVMAKARI--GHFVEAQILEAIGIDYVD--ESEVLT--PADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRT 165 (310)
Q Consensus 93 iPv~vk~~~--~~~~~a~~~~~aGad~Vi--~~~~~~--~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v 165 (310)
+.+.+-... ...+.++.+.++|+|.++ .++.-+ ..+..+.+++..++++++++ +-|.+-++.++++|+|.|.+
T Consensus 97 l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkV 176 (352)
T PF00478_consen 97 LLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKV 176 (352)
T ss_dssp BCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEE
T ss_pred ceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEE
Confidence 333333322 246788999999999995 444432 33556667665567888887 88999999999999999998
Q ss_pred cCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHH---hhcCCCCEEEeCCCCCCCHHHHHHH
Q 021609 166 KGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQT---KQLGRLPVVHFAAGGVATPADAAMM 241 (310)
Q Consensus 166 ~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i---~~~~~iPVi~iA~GGI~t~~d~~~~ 241 (310)
.-. .|.+|++- ... ..+.| ...+.+. ++...+||| |.|||++..|+.++
T Consensus 177 GiG--pGsiCtTr-----------~v~------------GvG~PQ~tAv~~~a~~a~~~~v~iI--ADGGi~~sGDi~KA 229 (352)
T PF00478_consen 177 GIG--PGSICTTR-----------EVT------------GVGVPQLTAVYECAEAARDYGVPII--ADGGIRTSGDIVKA 229 (352)
T ss_dssp SSS--SSTTBHHH-----------HHH------------SBSCTHHHHHHHHHHHHHCTTSEEE--EESS-SSHHHHHHH
T ss_pred ecc--CCcccccc-----------ccc------------ccCCcHHHHHHHHHHHhhhccCcee--ecCCcCcccceeee
Confidence 632 23444321 111 22222 3333333 233579998 88999999999999
Q ss_pred HHcCCCEEEEccccccCC
Q 021609 242 MQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 242 l~~GadgV~VGsai~~a~ 259 (310)
+.+|||+||+|+.|..++
T Consensus 230 la~GAd~VMlG~llAgt~ 247 (352)
T PF00478_consen 230 LAAGADAVMLGSLLAGTD 247 (352)
T ss_dssp HHTT-SEEEESTTTTTBT
T ss_pred eeecccceeechhhccCc
Confidence 999999999999999864
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=123.08 Aligned_cols=145 Identities=32% Similarity=0.534 Sum_probs=103.8
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHH----HHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIK----EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~----~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.++|+|+| +|| |.+...+.++|+.++.+++.+. .+++.+++||.+|.+.++.+.
T Consensus 79 ~aa~~~~~~G~d~I-elN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~------------ 145 (319)
T TIGR00737 79 EAAKINEELGADII-DINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDA------------ 145 (319)
T ss_pred HHHHHHHhCCCCEE-EEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCC------------
Confidence 45777788999997 887 5555556667776666665544 456677899999988663110
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhH
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~ 198 (310)
.. ...+-+.++.+.|+|++.+|++...+.
T Consensus 146 -------~~-------------------~~~~~a~~l~~~G~d~i~vh~r~~~~~------------------------- 174 (319)
T TIGR00737 146 -------HI-------------------NAVEAARIAEDAGAQAVTLHGRTRAQG------------------------- 174 (319)
T ss_pred -------cc-------------------hHHHHHHHHHHhCCCEEEEEccccccc-------------------------
Confidence 00 011234556678999999987532110
Q ss_pred HHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHH
Q 021609 199 VFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 199 ~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~ 263 (310)
+ .....++.++++++..++||+ ++|||.+++|+.+++ ..|||+|++|++++. ||+.
T Consensus 175 ---~--~~~~~~~~i~~i~~~~~ipvi--~nGgI~~~~da~~~l~~~gad~VmigR~~l~--~P~l 231 (319)
T TIGR00737 175 ---Y--SGEANWDIIARVKQAVRIPVI--GNGDIFSPEDAKAMLETTGCDGVMIGRGALG--NPWL 231 (319)
T ss_pred ---C--CCchhHHHHHHHHHcCCCcEE--EeCCCCCHHHHHHHHHhhCCCEEEEChhhhh--CChH
Confidence 0 123457888999988899998 789999999999999 689999999999997 7763
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.5e-12 Score=126.01 Aligned_cols=183 Identities=21% Similarity=0.274 Sum_probs=128.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+.++.+.++|+.+| +|. .+.-+. .....+.+.++.+..+++++++++ .+.+.+.|+|+|. ...
T Consensus 311 ~~l~~~l~~Gv~~v-qlR-------~k~~~~~~~~~~a~~l~~~~~~~~~~liind~------~~lA~~~~adGvHl~~~ 376 (502)
T PLN02898 311 DAVRAAIEGGATIV-QLR-------EKEAETREFIEEAKACLAICRSYGVPLLINDR------VDVALACDADGVHLGQS 376 (502)
T ss_pred HHHHHHHHcCCCEE-EEc-------cCCCCHHHHHHHHHHHHHHHHHhCCEEEEcCh------HHHHHhcCCCEEEeChH
Confidence 46778889999876 773 221110 001122333344556889887764 4567889999996 444
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
+++..+.++. .+.+..+++++|+.+++.++.+.|+|||.+.. . +++.++..
T Consensus 377 d~~~~~~r~~---~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gp-i---------------------f~t~tk~~---- 427 (502)
T PLN02898 377 DMPVRLARSL---LGPGKIIGVSCKTPEQAEQAWKDGADYIGCGG-V---------------------FPTNTKAN---- 427 (502)
T ss_pred hcCHHHHHHh---cCCCCEEEEeCCCHHHHHHHhhcCCCEEEECC-e---------------------ecCCCCCC----
Confidence 4544444332 34668899999999999999999999998753 2 22222110
Q ss_pred hhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCC---EEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 203 AKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD---GVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gad---gV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.....++.++++.+..++||++ .||| +++++.+++++|++ +|.++++|++++||...++++.+.++..+
T Consensus 428 --~~~~g~~~~~~~~~~~~~Pv~a--iGGI-~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~~~~ 499 (502)
T PLN02898 428 --NKTIGLDGLREVCEASKLPVVA--IGGI-SASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILTEAL 499 (502)
T ss_pred --CCCCCHHHHHHHHHcCCCCEEE--ECCC-CHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHHHHh
Confidence 1122367778877777899994 5999 69999999999999 99999999999999999999988876533
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=120.74 Aligned_cols=154 Identities=22% Similarity=0.262 Sum_probs=106.4
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+++.|+++| +|| |+++..+...|+.++.+++.+.++ ++++++||.+|.++++.+.
T Consensus 71 ~aA~~~~~~g~d~I-DlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~------------ 137 (318)
T TIGR00742 71 KCAKIAEKRGYDEI-NLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPL------------ 137 (318)
T ss_pred HHHHHHHhCCCCEE-EEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCc------------
Confidence 45667778899987 888 666655555588888888766665 5667899999999874211
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCC--CcchHHHHHHHHhhccceEeecccCh
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG--TGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~--~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
.+..+. .+-+..+.+.|++.|.+|+++. ++. +.
T Consensus 138 -----~~~~~~-------------------~~~~~~l~~~G~~~itvHgRt~~~qg~---------------------sg 172 (318)
T TIGR00742 138 -----DSYEFL-------------------CDFVEIVSGKGCQNFIVHARKAWLSGL---------------------SP 172 (318)
T ss_pred -----chHHHH-------------------HHHHHHHHHcCCCEEEEeCCchhhcCC---------------------Cc
Confidence 000011 1224556678999999998752 110 00
Q ss_pred hHHHHhhhcc-CCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 021609 197 DEVFTFAKKI-AAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 197 d~~~~~~~~~-~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
... ... ...++.+.++++.. ++||+ ++|||.|++|+.+++. |||+||+|++++. ||+...+
T Consensus 173 ~~~----~~~~~~~~~~i~~vk~~~~~ipVi--~NGdI~s~~da~~~l~-g~dgVMigRgal~--nP~if~~ 235 (318)
T TIGR00742 173 KEN----REIPPLRYERVYQLKKDFPHLTIE--INGGIKNSEQIKQHLS-HVDGVMVGREAYE--NPYLLAN 235 (318)
T ss_pred ccc----ccCCchhHHHHHHHHHhCCCCcEE--EECCcCCHHHHHHHHh-CCCEEEECHHHHh--CCHHHHH
Confidence 000 001 22477788887765 89998 7999999999999886 9999999999997 8885443
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-12 Score=118.44 Aligned_cols=77 Identities=19% Similarity=0.364 Sum_probs=68.9
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcc
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLG 289 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~ 289 (310)
++.++++++..++||+ +.|||.+++|+.+++.+|||+|++||+++. +| ...+++.+.+.++++.+++.++++..|
T Consensus 223 l~~v~~i~~~~~ipvi--~~GGI~s~~da~~~l~~GAd~V~igr~~l~--~p-~~~~~i~~~l~~~~~~~g~~~~~e~~g 297 (300)
T TIGR01037 223 LRMVYDVYKMVDIPII--GVGGITSFEDALEFLMAGASAVQVGTAVYY--RG-FAFKKIIEGLIAFLKAEGFTSIEELIG 297 (300)
T ss_pred HHHHHHHHhcCCCCEE--EECCCCCHHHHHHHHHcCCCceeecHHHhc--Cc-hHHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 4677788887889998 789999999999999999999999999997 67 466779999999999999999999998
Q ss_pred cc
Q 021609 290 EA 291 (310)
Q Consensus 290 ~~ 291 (310)
.+
T Consensus 298 ~~ 299 (300)
T TIGR01037 298 IA 299 (300)
T ss_pred cC
Confidence 75
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-11 Score=107.65 Aligned_cols=179 Identities=18% Similarity=0.252 Sum_probs=119.8
Q ss_pred cCCCH----HHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccCc--HHHHHHHHH
Q 021609 41 DVVTP----EQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIGH--FVEAQILEA 112 (310)
Q Consensus 41 ~~~~~----~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~~--~~~a~~~~~ 112 (310)
|+.++ +.++.+.+. ++++ .+. +. ...++ ++.++.+++. .++|+.+.....+ ...++.+.+
T Consensus 8 d~~~~~~~~~~~~~l~~~-i~~i-eig~~~---~~~~g-------~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~ 75 (202)
T cd04726 8 DLLDLEEALELAKKVPDG-VDII-EAGTPL---IKSEG-------MEAVRALREAFPDKIIVADLKTADAGALEAEMAFK 75 (202)
T ss_pred cCCCHHHHHHHHHHhhhc-CCEE-EcCCHH---HHHhC-------HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHh
Confidence 44555 355666666 7765 432 11 12223 6888888876 5889888544322 245788999
Q ss_pred cCCCEEEeCCCCC---chhHHHHHHhcCCCCcEE---EecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 113 IGIDYVDESEVLT---PADEENHINKHNFRIPFV---CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 113 aGad~Vi~~~~~~---~~~~~~~i~~~~~~i~~~---v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
+|+|+++.+.... ..++.+.+++ .++.++ .++.|.+++.++...|+|++.++.. +.+.
T Consensus 76 aGad~i~~h~~~~~~~~~~~i~~~~~--~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~~~-~~~~------------- 139 (202)
T cd04726 76 AGADIVTVLGAAPLSTIKKAVKAAKK--YGKEVQVDLIGVEDPEKRAKLLKLGVDIVILHRG-IDAQ------------- 139 (202)
T ss_pred cCCCEEEEEeeCCHHHHHHHHHHHHH--cCCeEEEEEeCCCCHHHHHHHHHCCCCEEEEcCc-cccc-------------
Confidence 9999997443222 3345555554 355554 5788999999888889999988532 1110
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
+ .+.....+.++++++..++|+. +.||| +++++.++++.|+|++++||+|++++||....+
T Consensus 140 ------~----------~~~~~~~~~i~~~~~~~~~~i~--~~GGI-~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 140 ------A----------AGGWWPEDDLKKVKKLLGVKVA--VAGGI-TPDTLPEFKKAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred ------c----------cCCCCCHHHHHHHHhhcCCCEE--EECCc-CHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHh
Confidence 0 0011234566666654678998 67999 599999999999999999999999999876654
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-11 Score=108.34 Aligned_cols=184 Identities=14% Similarity=0.165 Sum_probs=119.2
Q ss_pred HHHHHHHHHcCCcEEEecc--CCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-CcHHHHHHHHHcCCCEEEeC
Q 021609 45 PEQARVAEEAGACAVMALE--RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-GHFVEAQILEAIGIDYVDES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-~~~~~a~~~~~aGad~Vi~~ 121 (310)
.+.++.+.++|++.| +++ ..+... + ....++.++++++.++.|+.+.... +..+.++.+.++|+|+|+.+
T Consensus 14 ~~~~~~~~~~g~d~i-~~~~~Dg~~~~----~--~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh 86 (210)
T TIGR01163 14 GEEVKAVEEAGADWI-HVDVMDGHFVP----N--LTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVH 86 (210)
T ss_pred HHHHHHHHHcCCCEE-EEcCCCCCCCC----C--cccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence 378899999999987 442 111100 1 1123789999997777886543322 33466788889999998654
Q ss_pred CCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecccChh
Q 021609 122 EVL--TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 122 ~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~~~~d 197 (310)
... ......+.+++.+..+.+++++++..+..+....++|++.+.+. +.++. ..
T Consensus 87 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-------------------~~--- 144 (210)
T TIGR01163 87 PEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQ-------------------KF--- 144 (210)
T ss_pred cCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcc-------------------cc---
Confidence 432 23344455555555555666777777777777778998765432 11221 00
Q ss_pred HHHHhhhccCCcHHHHHHHhhc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 198 EVFTFAKKIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
....++.++++++. .++|+. +.||| +++++.++++.|+|++++||+|++++||...++++
T Consensus 145 --------~~~~~~~i~~i~~~~~~~~~~~~i~--v~GGI-~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 145 --------IPDTLEKIREVRKMIDENGLSILIE--VDGGV-NDDNARELAEAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred --------cHHHHHHHHHHHHHHHhcCCCceEE--EECCc-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 01112334444332 136887 56999 58999999999999999999999999998887754
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.2e-12 Score=109.11 Aligned_cols=162 Identities=22% Similarity=0.275 Sum_probs=108.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+.+.++.++|++.+ +|+ .+..+. +....+.+.++.+..++|++++++ .+.+.+.|+|+|. ...
T Consensus 16 ~~l~~~~~~gv~~v-~lR-------~k~~~~~~~~~~a~~l~~~~~~~~~~liin~~------~~la~~~~~dGvHl~~~ 81 (180)
T PF02581_consen 16 EQLEAALAAGVDLV-QLR-------EKDLSDEELLELARRLAELCQKYGVPLIINDR------VDLALELGADGVHLGQS 81 (180)
T ss_dssp HHHHHHHHTT-SEE-EEE--------SSS-HHHHHHHHHHHHHHHHHTTGCEEEES-------HHHHHHCT-SEEEEBTT
T ss_pred HHHHHHHHCCCcEE-EEc-------CCCCCccHHHHHHHHHHHHhhcceEEEEecCC------HHHHHhcCCCEEEeccc
Confidence 56778889998876 773 221010 011123444445567899998774 4568889999996 555
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
.++..+..+.+ +.+..+.++||+.+|+..+.+.|+||+.+.+- +++.++.+
T Consensus 82 ~~~~~~~r~~~---~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpv----------------------f~T~sk~~---- 132 (180)
T PF02581_consen 82 DLPPAEARKLL---GPDKIIGASCHSLEEAREAEELGADYVFLGPV----------------------FPTSSKPG---- 132 (180)
T ss_dssp SSSHHHHHHHH---TTTSEEEEEESSHHHHHHHHHCTTSEEEEETS----------------------S--SSSSS----
T ss_pred ccchHHhhhhc---ccceEEEeecCcHHHHHHhhhcCCCEEEECCc----------------------cCCCCCcc----
Confidence 56666665544 45789999999999999999999999987642 22222110
Q ss_pred hhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccc
Q 021609 203 AKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai 255 (310)
.....++.+.++++..++||+++ ||| +++++.++.++|++||.+.|+|
T Consensus 133 --~~~~g~~~l~~~~~~~~~pv~Al--GGI-~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 133 --APPLGLDGLREIARASPIPVYAL--GGI-TPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp ---TTCHHHHHHHHHHHTSSCEEEE--SS---TTTHHHHHHTT-SEEEESHHH
T ss_pred --ccccCHHHHHHHHHhCCCCEEEE--cCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence 01223677778887788999954 999 7999999999999999999875
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-12 Score=116.54 Aligned_cols=182 Identities=25% Similarity=0.367 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHH----HHHHHHhhcCcceeeccccCc---HHHHHHHHHcCCCE
Q 021609 46 EQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQ----LIKEIKQSVTIPVMAKARIGH---FVEAQILEAIGIDY 117 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~----~i~~i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad~ 117 (310)
+.|+.++++|+|+| +|| .+|...+ .|..+..+++ .++.+++.+++||.+|...+. .+.++.+.++|+|+
T Consensus 106 ~~a~~~~~~G~d~i-ElN~~cP~~~~--~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~ 182 (296)
T cd04740 106 EVAEKLADAGADAI-ELNISCPNVKG--GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADG 182 (296)
T ss_pred HHHHHHHHcCCCEE-EEECCCCCCCC--CcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCE
Confidence 46888889999987 777 4443211 1333444454 455667777999999986542 24456677778877
Q ss_pred EEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEE-cCCCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 118 VDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRT-KGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v-~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
+...+...- .. ++.++.. ..+.. .++ .++..
T Consensus 183 i~~~nt~~g-----------~~----~~~~~~~----------~~~~~~~gg-~sg~~---------------------- 214 (296)
T cd04740 183 LTLINTLKG-----------MA----IDIETRK----------PILGNVTGG-LSGPA---------------------- 214 (296)
T ss_pred EEEECCCcc-----------cc----cccccCc----------eeecCCcce-ecCcc----------------------
Confidence 642211000 00 0000000 00000 000 01100
Q ss_pred hHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.....+++++++++..++||+ +.|||.+++|+.+++++|||+|++||+++. ||.. .+++.+.+.+++
T Consensus 215 --------~~~~~~~~i~~i~~~~~ipii--~~GGI~~~~da~~~l~~GAd~V~igra~l~--~p~~-~~~i~~~l~~~~ 281 (296)
T cd04740 215 --------IKPIALRMVYQVYKAVEIPII--GVGGIASGEDALEFLMAGASAVQVGTANFV--DPEA-FKEIIEGLEAYL 281 (296)
T ss_pred --------cchHHHHHHHHHHHhcCCCEE--EECCCCCHHHHHHHHHcCCCEEEEchhhhc--ChHH-HHHHHHHHHHHH
Confidence 001235677888887789998 789999999999999999999999999997 8864 455999999999
Q ss_pred Chhhhhhhhhhcccc
Q 021609 277 DPEVLAEVSCGLGEA 291 (310)
Q Consensus 277 ~~~~~~~~~~~~~~~ 291 (310)
+.+++.++++..|.+
T Consensus 282 ~~~g~~~~~~~~g~~ 296 (296)
T cd04740 282 DEEGIKSIEELVGLA 296 (296)
T ss_pred HHcCCCCHHHHhCcC
Confidence 999999999988853
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.8e-12 Score=123.15 Aligned_cols=229 Identities=20% Similarity=0.218 Sum_probs=127.7
Q ss_pred ceeEEEeeCCce-eeeec-cCcceeecchhhhhhCcccccC-------CCHH-HHHHHHHcCCcEE-EeccCCccccccc
Q 021609 4 TGVVAVYGNDGA-ITETK-KSPFSVKVGLAQMLRGGVIMDV-------VTPE-QARVAEEAGACAV-MALERVPADIRSQ 72 (310)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~i~~~-------~~~~-~A~~~~~~Ga~~i-~~L~~~~~~~~~~ 72 (310)
+|+...+||.++ +..++ ...|.+.+...+ .+.++.++ .+++ ..++.+..+|+++ +.+|+........
T Consensus 89 ~G~~~~~Gs~~~~~~~~~~~~~~~~vr~~~p--~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~ 166 (352)
T PRK05437 89 LGIAMGVGSQRAALKDPELADSFSVVRKVAP--DGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPE 166 (352)
T ss_pred cCCCeEecccHhhccChhhHHHHHHHHHHCC--CceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCC
Confidence 688899999998 55555 566665444432 01122222 1244 4445566788887 5666322222221
Q ss_pred CCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHH
Q 021609 73 GGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEA 152 (310)
Q Consensus 73 ~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea 152 (310)
+...+....+.++++++.+++||++|..... .+.+++
T Consensus 167 g~~~f~~~le~i~~i~~~~~vPVivK~~g~g-------------------------------------------~s~~~a 203 (352)
T PRK05437 167 GDRDFRGWLDNIAEIVSALPVPVIVKEVGFG-------------------------------------------ISKETA 203 (352)
T ss_pred CcccHHHHHHHHHHHHHhhCCCEEEEeCCCC-------------------------------------------CcHHHH
Confidence 1111111236888889889999999975210 223456
Q ss_pred HHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCC
Q 021609 153 LRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGG 231 (310)
Q Consensus 153 ~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GG 231 (310)
+.+.+.|+|+|.++|+++++-. ..+.+|.... ....++.. | ..+....+.++++. .++||+ ++||
T Consensus 204 ~~l~~~Gvd~I~Vsg~GGt~~~--~ie~~R~~~~--~~~~~~~~-----~---g~pt~~~l~~i~~~~~~ipvi--a~GG 269 (352)
T PRK05437 204 KRLADAGVKAIDVAGAGGTSWA--AIENYRARDD--RLASYFAD-----W---GIPTAQSLLEARSLLPDLPII--ASGG 269 (352)
T ss_pred HHHHHcCCCEEEECCCCCCCcc--chhhhhhhcc--cccccccc-----c---cCCHHHHHHHHHHhcCCCeEE--EECC
Confidence 6666667777777665443311 1122221000 00011110 0 12234566666665 479998 7899
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccC--C-CHH---HHHHHHHHHHhccCChhhhhhhhhhcccc
Q 021609 232 VATPADAAMMMQLGCDGVFVGSGVFKS--G-DPV---KRAQAIVRAVTHYSDPEVLAEVSCGLGEA 291 (310)
Q Consensus 232 I~t~~d~~~~l~~GadgV~VGsai~~a--~-dp~---~~a~~l~~~i~~~~~~~~~~~~~~~~~~~ 291 (310)
|+++.|+.+++.+|||+|.+|++++.+ . .+. ...+.+...++..+..-++.+++++.+..
T Consensus 270 I~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~ 335 (352)
T PRK05437 270 IRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRKVP 335 (352)
T ss_pred CCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCCC
Confidence 999999999999999999999999973 1 122 23334445555544444445555554443
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=120.02 Aligned_cols=144 Identities=22% Similarity=0.353 Sum_probs=105.8
Q ss_pred HHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 47 QARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+|+.+... +|+| +|| |+.-..+..-|+.++.+++++.++ ++.+++||.+|.|++...+
T Consensus 91 Aa~lv~~y-~D~i-dlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~------------- 155 (358)
T KOG2335|consen 91 AARLVQPY-CDGI-DLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLE------------- 155 (358)
T ss_pred HHHHhhhh-cCcc-cccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHH-------------
Confidence 44444444 4987 888 543333433488888888877765 5668999999999873111
Q ss_pred eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
.|.+.++.+.++|++.+.|||++... ..
T Consensus 156 ---------------------------kTvd~ak~~e~aG~~~ltVHGRtr~~-------------------kg------ 183 (358)
T KOG2335|consen 156 ---------------------------KTVDYAKMLEDAGVSLLTVHGRTREQ-------------------KG------ 183 (358)
T ss_pred ---------------------------HHHHHHHHHHhCCCcEEEEecccHHh-------------------cC------
Confidence 24567888889999999999985210 00
Q ss_pred HHhhhccCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHH
Q 021609 200 FTFAKKIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~ 264 (310)
.+....+++.++.+++... +||+ |+|+|.+.+|+.++++ +|+||||+|++++. ||+.+
T Consensus 184 ---~~~~pad~~~i~~v~~~~~~ipvi--aNGnI~~~~d~~~~~~~tG~dGVM~arglL~--NPa~F 243 (358)
T KOG2335|consen 184 ---LKTGPADWEAIKAVRENVPDIPVI--ANGNILSLEDVERCLKYTGADGVMSARGLLY--NPALF 243 (358)
T ss_pred ---CCCCCcCHHHHHHHHHhCcCCcEE--eeCCcCcHHHHHHHHHHhCCceEEecchhhc--Cchhh
Confidence 0123556899999988766 9998 8999999999999997 99999999999997 56543
|
|
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-11 Score=108.16 Aligned_cols=163 Identities=23% Similarity=0.315 Sum_probs=116.0
Q ss_pred HHHHHHHHhhcCcceeecccc----C---cHHHHHHHHHcCCCEEEeCCC---CCchhHHHHHHh-cCCCCcEEEecCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARI----G---HFVEAQILEAIGIDYVDESEV---LTPADEENHINK-HNFRIPFVCGCRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~----~---~~~~a~~~~~aGad~Vi~~~~---~~~~~~~~~i~~-~~~~i~~~v~~~t~ 149 (310)
+..+..+++.+++|+.+++.. + ....++.+.++|+|+|+..+. +...++.+.+.. ...++.+++++++.
T Consensus 45 ~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~~ 124 (223)
T PRK04302 45 ALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNNP 124 (223)
T ss_pred HHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 677888888889999986432 1 134578899999999986553 445555555544 44688888899999
Q ss_pred HHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEE
Q 021609 150 GEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVH 226 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~ 226 (310)
+++.++.+.+.++|.+.+. .+++.. ..+..++ ...+..+.+++. .++|++
T Consensus 125 ~~~~~~~~~~~~~I~~~p~~~igt~~~----------------~~~~~~~----------~i~~~~~~ir~~~~~~pvi- 177 (223)
T PRK04302 125 ETSAAAAALGPDYVAVEPPELIGTGIP----------------VSKAKPE----------VVEDAVEAVKKVNPDVKVL- 177 (223)
T ss_pred HHHHHHhcCCCCEEEEeCccccccCCC----------------CCcCCHH----------HHHHHHHHHHhccCCCEEE-
Confidence 9999888889999987652 222200 0000000 012344445553 368998
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
++|||++++++.++++.|+|||+|||++++++||....++|...
T Consensus 178 -~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~~ 221 (223)
T PRK04302 178 -CGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVSP 221 (223)
T ss_pred -EECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHhh
Confidence 68999999999999999999999999999999998887777654
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-11 Score=128.66 Aligned_cols=191 Identities=17% Similarity=0.208 Sum_probs=131.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+..+.+.++|+++| +| |.+.-+. .......+.++++..+++++++++ ++.+.+.|+| |. ...
T Consensus 23 ~~l~~~l~~g~~~i-ql-------R~K~~~~~~~~~~a~~l~~l~~~~~~~liind~------~~la~~~~~d-VHlg~~ 87 (755)
T PRK09517 23 GIVDSAISGGVSVV-QL-------RDKNAGVEDVRAAAKELKELCDARGVALVVNDR------LDVAVELGLH-VHIGQG 87 (755)
T ss_pred HHHHHHHhcCCCEE-EE-------eCCCCCHHHHHHHHHHHHHHHHHhCCeEEEeCh------HHHHHHcCCC-eecCCC
Confidence 56677888999876 77 3222110 111123444455667899998774 5678889999 85 555
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHH----h---CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccC
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIR----E---GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~----~---Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
+++....++.+ +.+..++++||+.+++.++.. . |+||+.+.+- +++.+
T Consensus 88 dl~~~~~r~~~---~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpv----------------------f~T~t 142 (755)
T PRK09517 88 DTPYTQARRLL---PAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPV----------------------ASTAT 142 (755)
T ss_pred cCCHHHHHHhc---CCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCc----------------------cccCC
Confidence 55544444332 456789999999999876432 2 4999987532 22222
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcCC---CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLGR---LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~~---iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+.+. .....++.++++++..+ +||++| ||| +++++.+++++|++||.+.|+|++++||...++++.+++
T Consensus 143 K~~~-----~~~lG~~~l~~~~~~~~~~~iPv~Ai--GGI-~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~ 214 (755)
T PRK09517 143 KPDA-----PPALGVDGIAEIAAVAQDHGIASVAI--GGV-GLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAF 214 (755)
T ss_pred CCCC-----CCCCCHHHHHHHHHhcCcCCCCEEEE--CCC-CHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHH
Confidence 2100 01123677777777666 999955 999 799999999999999999999999999999999999999
Q ss_pred hccCChhhhhhh
Q 021609 273 THYSDPEVLAEV 284 (310)
Q Consensus 273 ~~~~~~~~~~~~ 284 (310)
+....++...++
T Consensus 215 ~~~~~~~~~~~~ 226 (755)
T PRK09517 215 QPTRSPETQTEL 226 (755)
T ss_pred HHhhcccccccc
Confidence 887666553333
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-12 Score=114.34 Aligned_cols=130 Identities=20% Similarity=0.213 Sum_probs=97.1
Q ss_pred HHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHHHh---hcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCC
Q 021609 52 EEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEIKQ---SVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLT 125 (310)
Q Consensus 52 ~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i~~---~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~ 125 (310)
...++++| +|| |+++..+...|+.++++++.+.++-+ ..++||.+|.+.+..+.
T Consensus 89 v~~~~d~I-diN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~------------------- 148 (231)
T TIGR00736 89 IAEHADII-EINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPL------------------- 148 (231)
T ss_pred HhcCCCEE-EEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcc-------------------
Confidence 34588976 888 77777777789999999987777643 34899999999763100
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+.+-++++.+.|+|.|.++... .+.
T Consensus 149 ---------------------~~~~~a~~l~~aGad~i~Vd~~~-~g~-------------------------------- 174 (231)
T TIGR00736 149 ---------------------DELIDALNLVDDGFDGIHVDAMY-PGK-------------------------------- 174 (231)
T ss_pred ---------------------hHHHHHHHHHHcCCCEEEEeeCC-CCC--------------------------------
Confidence 11233555667788888776421 110
Q ss_pred cCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 206 IAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
....++.++++++..+ +||| ++|||.|++|+.+++++|||+|++||++++
T Consensus 175 ~~a~~~~I~~i~~~~~~ipII--gNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 175 PYADMDLLKILSEEFNDKIII--GNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred chhhHHHHHHHHHhcCCCcEE--EECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 0135788999988774 9998 899999999999999999999999999986
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.9e-12 Score=113.72 Aligned_cols=179 Identities=26% Similarity=0.315 Sum_probs=122.3
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHH-hhcCcceeeccccC------cH
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIK-QSVTIPVMAKARIG------HF 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~-~~~~iPv~vk~~~~------~~ 104 (310)
.+.++.+.+.|||.| +|. |. |..+++. +|.+....++.+++++ +..++|+++....+ ..
T Consensus 29 ~~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e 107 (258)
T PRK13111 29 LEIIKALVEAGADII-ELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVE 107 (258)
T ss_pred HHHHHHHHHCCCCEE-EECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHH
Confidence 367888999999987 664 21 2222221 2444444578888888 45789988765443 34
Q ss_pred HHHHHHHHcCCCEEEeCCCCCch---hHHHHHHhcCCCCcEEEecCCH-HHHHHHHHhCCCEEEEcCCCC-CcchHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEVLTPA---DEENHINKHNFRIPFVCGCRNL-GEALRRIREGAAMIRTKGEAG-TGNIIEAVR 179 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~~~~---~~~~~i~~~~~~i~~~v~~~t~-~ea~~~~~~Gad~V~v~g~~~-~~~~~~~~~ 179 (310)
.+.+.+.++|+|+++.++. +++ ++.+.+++++.....+++.++. +.+....+...++|.+-+..+ ||. .
T Consensus 108 ~f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~-~---- 181 (258)
T PRK13111 108 RFAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGA-R---- 181 (258)
T ss_pred HHHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCc-c----
Confidence 6689999999999988764 344 4445555566676677777775 445556666667775432222 331 0
Q ss_pred HHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
... ....+.++.+++..++|++ .++||++++|+.+++.. ||||+|||+|++
T Consensus 182 ------------------------~~~~~~~~~~i~~vk~~~~~pv~--vGfGI~~~e~v~~~~~~-ADGviVGSaiv~ 233 (258)
T PRK13111 182 ------------------------SADAADLAELVARLKAHTDLPVA--VGFGISTPEQAAAIAAV-ADGVIVGSALVK 233 (258)
T ss_pred ------------------------cCCCccHHHHHHHHHhcCCCcEE--EEcccCCHHHHHHHHHh-CCEEEEcHHHHH
Confidence 011 2235688889988899998 58999999999999976 999999999996
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=112.99 Aligned_cols=172 Identities=23% Similarity=0.373 Sum_probs=132.5
Q ss_pred HHHHHHHHcCCCEEE----eCC--CCCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh-----CCCEEE--EcCC--
Q 021609 105 VEAQILEAIGIDYVD----ESE--VLTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE-----GAAMIR--TKGE-- 168 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi----~~~--~~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~-----Gad~V~--v~g~-- 168 (310)
...+.+.++|++.|. ..+ .-....+.+.+...++. ++++.+|+|.+||.+.+++ |-++|+ +.+.
T Consensus 98 ~~~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~ 177 (326)
T PRK11840 98 ETAAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAK 177 (326)
T ss_pred HHHHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCC
Confidence 344677889999994 112 11235777888765566 8999999999999987653 668887 4442
Q ss_pred CCCcchHHHHHHHHhhccc-eEeecccChhHHHHhh-hc-----cCC------------cHHHHHHHhhcCCCCEEEeCC
Q 021609 169 AGTGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTFA-KK-----IAA------------PYDLVMQTKQLGRLPVVHFAA 229 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~~-~~-----~~~------------~~~~i~~i~~~~~iPVi~iA~ 229 (310)
...+++.+++++.+++... +.+++++.+|....-. .+ .-| ..+.++.+.+..++||+ ..
T Consensus 178 ~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVi--vd 255 (326)
T PRK11840 178 TLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVL--VD 255 (326)
T ss_pred CcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCCCCCCCHHHHHHHHHcCCCcEE--Ee
Confidence 3366788999999998777 8999999988775210 00 001 35677777777789998 57
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCCh
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~ 278 (310)
+||++++|+.+++++|||||++.|++.+++||..+|+.|..+++.++..
T Consensus 256 AGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aGr~a 304 (326)
T PRK11840 256 AGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAGRLA 304 (326)
T ss_pred CCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876543
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-12 Score=116.94 Aligned_cols=180 Identities=22% Similarity=0.304 Sum_probs=121.9
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHH-hhcCcceeeccccC------cH
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIK-QSVTIPVMAKARIG------HF 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~-~~~~iPv~vk~~~~------~~ 104 (310)
.+.++.+.++|+|.+ +|. |. |..+++. .|......++.+++++ +..++|+++....+ ..
T Consensus 27 ~~~~~~l~~~GaD~i-EiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e 105 (259)
T PF00290_consen 27 LEILKALEEAGADII-EIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIE 105 (259)
T ss_dssp HHHHHHHHHTTBSSE-EEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HH
T ss_pred HHHHHHHHHcCCCEE-EECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchH
Confidence 478899999999976 553 21 2222221 3555445567888898 67899999875543 34
Q ss_pred HHHHHHHHcCCCEEEeCCC--CCchhHHHHHHhcCCCCcEEEecCCHHHHHH-HHHhCCCEEEEcCCCC-CcchHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEV--LTPADEENHINKHNFRIPFVCGCRNLGEALR-RIREGAAMIRTKGEAG-TGNIIEAVRH 180 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~--~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~-~~~~Gad~V~v~g~~~-~~~~~~~~~~ 180 (310)
.+++.+.++|+|+++++|. .+..++.+.+++++..++.+++.+|.++..+ ..+....+|.+-...+ ||.-
T Consensus 106 ~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~------ 179 (259)
T PF00290_consen 106 RFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSR------ 179 (259)
T ss_dssp HHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTT------
T ss_pred HHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCc------
Confidence 6788999999999998885 2344666667677788888888877666555 4566667776543322 3320
Q ss_pred HHhhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
. ... .-.+.++.+++..++|++ .+.||++++++.++. .|||||+|||+|++
T Consensus 180 ------------~-----------~~~~~l~~~i~~ik~~~~~Pv~--vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~ 231 (259)
T PF00290_consen 180 ------------T-----------ELPDELKEFIKRIKKHTDLPVA--VGFGISTPEQAKKLA-AGADGVIVGSAFVK 231 (259)
T ss_dssp ------------S-----------SCHHHHHHHHHHHHHTTSS-EE--EESSS-SHHHHHHHH-TTSSEEEESHHHHH
T ss_pred ------------c-----------cchHHHHHHHHHHHhhcCcceE--EecCCCCHHHHHHHH-ccCCEEEECHHHHH
Confidence 0 000 114678888888899998 689999999999988 99999999999997
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.2e-11 Score=103.03 Aligned_cols=156 Identities=15% Similarity=0.218 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcc-eeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIP-VMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iP-v~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++.+.++|++.+ ++ |.+. ....+.++.+++....- +.....+ ..++++.+.++|||+++.+..
T Consensus 28 ~~~~~~~~~Gv~~v-ql-------r~k~----~~~~e~~~~~~~~~~~~~~g~gtvl-~~d~~~~A~~~gAdgv~~p~~- 93 (187)
T PRK07455 28 QMAEAVAAGGMRLI-EI-------TWNS----DQPAELISQLREKLPECIIGTGTIL-TLEDLEEAIAAGAQFCFTPHV- 93 (187)
T ss_pred HHHHHHHHCCCCEE-EE-------eCCC----CCHHHHHHHHHHhCCCcEEeEEEEE-cHHHHHHHHHcCCCEEECCCC-
Confidence 46888889999976 76 3222 11145566665543321 1111221 238899999999999974442
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+..+..+.. ++..+++++|..|+.++.+.|+||++++.. ..
T Consensus 94 -~~~~~~~~~~~--~~~~i~G~~t~~e~~~A~~~Gadyv~~Fpt---~~------------------------------- 136 (187)
T PRK07455 94 -DPELIEAAVAQ--DIPIIPGALTPTEIVTAWQAGASCVKVFPV---QA------------------------------- 136 (187)
T ss_pred -CHHHHHHHHHc--CCCEEcCcCCHHHHHHHHHCCCCEEEECcC---Cc-------------------------------
Confidence 12333333333 345666799999999999999999998542 10
Q ss_pred ccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 205 KIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
....+.++.++... ++|++ +.||| +++++.+++++|+++|.++|+|++
T Consensus 137 --~~G~~~l~~~~~~~~~ipvv--aiGGI-~~~n~~~~l~aGa~~vav~s~i~~ 185 (187)
T PRK07455 137 --VGGADYIKSLQGPLGHIPLI--PTGGV-TLENAQAFIQAGAIAVGLSGQLFP 185 (187)
T ss_pred --ccCHHHHHHHHhhCCCCcEE--EeCCC-CHHHHHHHHHCCCeEEEEehhccc
Confidence 11245677777655 69999 56999 799999999999999999999996
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.2e-11 Score=102.53 Aligned_cols=176 Identities=24% Similarity=0.294 Sum_probs=117.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHh---hcCcceeeccccCcHHHHHHHHHcCCCEEEeCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQ---SVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~---~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~ 122 (310)
+..+.+.+.|++++ +++ ...++ ...+...++++++ .+++++++.. ..+.+.++|+|++....
T Consensus 16 ~~l~~l~~~g~~~i-~lr-------~~~~~-~~~~~~~~~~i~~~~~~~~~~l~~~~------~~~~a~~~g~~~vh~~~ 80 (196)
T cd00564 16 EVVEAALKGGVTLV-QLR-------EKDLS-ARELLELARALRELCRKYGVPLIIND------RVDLALAVGADGVHLGQ 80 (196)
T ss_pred HHHHHHHhcCCCEE-EEe-------CCCCC-HHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEEecCc
Confidence 56778888899986 663 11111 1111234444443 3467777543 45678899999996443
Q ss_pred -CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHH
Q 021609 123 -VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 123 -~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~ 201 (310)
......+.+. ...+..+.++++|.+++.++.+.|+|++.+.....+. +...
T Consensus 81 ~~~~~~~~~~~---~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~~----------------------~~~~--- 132 (196)
T cd00564 81 DDLPVAEARAL---LGPDLIIGVSTHSLEEALRAEELGADYVGFGPVFPTP----------------------TKPG--- 132 (196)
T ss_pred ccCCHHHHHHH---cCCCCEEEeeCCCHHHHHHHhhcCCCEEEECCccCCC----------------------CCCC---
Confidence 2222222222 3456788889999999999999999999875321111 1000
Q ss_pred hhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 202 FAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 202 ~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
......++.++++++..++|++ +.||| +.+++.+++.+|+|++++||+|++++||....+++.
T Consensus 133 --~~~~~~~~~~~~~~~~~~~pv~--a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 133 --AGPPLGLELLREIAELVEIPVV--AIGGI-TPENAAEVLAAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred --CCCCCCHHHHHHHHHhCCCCEE--EECCC-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence 0012336677777776789998 67999 589999999999999999999999999987776653
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=115.03 Aligned_cols=183 Identities=23% Similarity=0.332 Sum_probs=118.6
Q ss_pred HHHHHHHHcC-CcEEEecc-CCcccccccCCCCCCCCHH----HHHHHHhhcCcceeeccccCc---HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAG-ACAVMALE-RVPADIRSQGGVARMSDPQ----LIKEIKQSVTIPVMAKARIGH---FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~G-a~~i~~L~-~~~~~~~~~~G~~~~~~~~----~i~~i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad 116 (310)
+.|+.++++| +|+| +|| .+|.. ..+|.....+++ .++.+++.+++||.+|...+. .+.++.+.++|+|
T Consensus 108 ~~a~~~~~aG~~D~i-ElN~~cP~~--~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d 184 (301)
T PRK07259 108 EVAEKLSKAPNVDAI-ELNISCPNV--KHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGAD 184 (301)
T ss_pred HHHHHHhccCCcCEE-EEECCCCCC--CCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCC
Confidence 4677888898 9987 887 44432 122444444444 555567778999999987542 2445677778888
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
++...+... +.. .+..+. ...+.....+.++..
T Consensus 185 ~i~~~nt~~-----------g~~----~~~~~~----------~~~~~~~~gg~sg~~---------------------- 217 (301)
T PRK07259 185 GLSLINTLK-----------GMA----IDIKTR----------KPILANVTGGLSGPA---------------------- 217 (301)
T ss_pred EEEEEcccc-----------ccc----cccccC----------ceeecCCcCccCCcC----------------------
Confidence 774221100 000 000000 000000000011100
Q ss_pred hHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.....+++++++++.+++||+ +.|||.|++|+.+++.+|||+|++||+++. ||. ..+.+.+.+++|+
T Consensus 218 --------~~p~~l~~v~~i~~~~~ipvi--~~GGI~~~~da~~~l~aGAd~V~igr~ll~--~P~-~~~~i~~~l~~~~ 284 (301)
T PRK07259 218 --------IKPIALRMVYQVYQAVDIPII--GMGGISSAEDAIEFIMAGASAVQVGTANFY--DPY-AFPKIIEGLEAYL 284 (301)
T ss_pred --------cccccHHHHHHHHHhCCCCEE--EECCCCCHHHHHHHHHcCCCceeEcHHHhc--CcH-HHHHHHHHHHHHH
Confidence 012246778888887899998 789999999999999999999999999997 775 5566999999999
Q ss_pred Chhhhhhhhhhcccc
Q 021609 277 DPEVLAEVSCGLGEA 291 (310)
Q Consensus 277 ~~~~~~~~~~~~~~~ 291 (310)
+.+++.++++..|.+
T Consensus 285 ~~~g~~~i~~~~g~~ 299 (301)
T PRK07259 285 DKYGIKSIEEIVGIA 299 (301)
T ss_pred HHcCCCCHHHHhCcc
Confidence 999999999988854
|
|
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=117.19 Aligned_cols=196 Identities=20% Similarity=0.226 Sum_probs=125.1
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccc-cccCCCCCCCCHHHHHHH----HhhcCcceeeccccCc---HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALE-RVPADI-RSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGH---FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~-~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~---~~~a~~~~~aGad 116 (310)
+.++.+++.|||+| +|| .+|... ....|.....+++.++++ ++.+++||++|+..+. .+.++.+.++|||
T Consensus 131 ~~a~~~e~~GaD~i-ELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gad 209 (385)
T PLN02495 131 EIIERVEETGVDAL-EINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCE 209 (385)
T ss_pred HHHHHHHhcCCCEE-EEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCC
Confidence 57888999999987 887 444322 122355556677877655 6667899999987642 3567888999999
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEE---cCCC-CCcchHHHHHHHHhhccceEeec
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRT---KGEA-GTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v---~g~~-~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
+|+..+.+... ..++..+... ...+ ++.+ .+|. +++.+
T Consensus 210 gi~liNT~~~~--------------~~ID~~t~~p----------~~~~~~~~~~GGlSG~---alkpi----------- 251 (385)
T PLN02495 210 GVAAINTIMSV--------------MGINLDTLRP----------EPCVEGYSTPGGYSSK---AVRPI----------- 251 (385)
T ss_pred EEEEecccCcc--------------cccccccCcc----------ccccCCCCCCCCccch---hhhHH-----------
Confidence 99633321100 0001111000 0000 1111 1221 11110
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
.+...+++.+.+... .++|++ +.|||.|.+|+.+.+.+||+.|+|+|+++. .-| ...+++.+
T Consensus 252 ------------Al~~v~~i~~~~~~~~~~~ipIi--GvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~-~Gp-~vi~~i~~ 315 (385)
T PLN02495 252 ------------ALAKVMAIAKMMKSEFPEDRSLS--GIGGVETGGDAAEFILLGADTVQVCTGVMM-HGY-PLVKNLCA 315 (385)
T ss_pred ------------HHHHHHHHHHHHhhhccCCCcEE--EECCCCCHHHHHHHHHhCCCceeEeeeeee-cCc-HHHHHHHH
Confidence 000112223333211 158998 789999999999999999999999999997 235 46777999
Q ss_pred HHhccCChhhhhhhhhhcccchhccc
Q 021609 271 AVTHYSDPEVLAEVSCGLGEAMVGLN 296 (310)
Q Consensus 271 ~i~~~~~~~~~~~~~~~~~~~~~~~~ 296 (310)
.+++|++.+++.++++..|.+.+.+.
T Consensus 316 ~L~~~m~~~G~~si~e~~G~~~~~~~ 341 (385)
T PLN02495 316 ELQDFMKKHNFSSIEDFRGASLPYFT 341 (385)
T ss_pred HHHHHHHHcCCCCHHHHhCcCCcccC
Confidence 99999999999999999999987764
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.2e-11 Score=112.48 Aligned_cols=207 Identities=22% Similarity=0.316 Sum_probs=128.8
Q ss_pred eccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEec------cCCccccccc-CCC-------------CCC
Q 021609 19 TKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMAL------ERVPADIRSQ-GGV-------------ARM 78 (310)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L------~~~~~~~~~~-~G~-------------~~~ 78 (310)
.....|.+..|++. +.+.++++++++.++.++|+.+++.. ++.+...... .+. ...
T Consensus 39 ~~~~~~~i~~Piv~----a~M~gVt~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P 114 (368)
T PRK08649 39 WQIDAYRFEIPIIA----SPMDAVVSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEP 114 (368)
T ss_pred eeecceeccCcEec----cCCcccCCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCC
Confidence 44667888999998 77889999999999999999776552 1111110000 000 000
Q ss_pred CCHH----HHHHHHhhcCcceeecccc-CcHHHHHHHHHcCCCEEEeCC---------CC-CchhHHHHHHhcCCCCcEE
Q 021609 79 SDPQ----LIKEIKQSVTIPVMAKARI-GHFVEAQILEAIGIDYVDESE---------VL-TPADEENHINKHNFRIPFV 143 (310)
Q Consensus 79 ~~~~----~i~~i~~~~~iPv~vk~~~-~~~~~a~~~~~aGad~Vi~~~---------~~-~~~~~~~~i~~~~~~i~~~ 143 (310)
..++ .+++++++ ++++.++... ...+.++.+.++|+|.|..+. .. .+.++.+.+++ .+++++
T Consensus 115 ~~p~l~~~iv~~~~~~-~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~--~~ipVI 191 (368)
T PRK08649 115 IKPELITERIAEIRDA-GVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE--LDVPVI 191 (368)
T ss_pred CCHHHHHHHHHHHHhC-eEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH--CCCCEE
Confidence 1122 23333432 3444333321 235778999999999996321 11 35556666554 467887
Q ss_pred E-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHHhh---
Q 021609 144 C-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQTKQ--- 218 (310)
Q Consensus 144 v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i~~--- 218 (310)
+ .+.|.++++.+.+.|+|.|.+. .+. +..+++ +... +.+.| ...+.+..+
T Consensus 192 aG~V~t~e~A~~l~~aGAD~V~VG-~G~-Gs~~~t-----------~~~~------------g~g~p~~~ai~~~~~a~~ 246 (368)
T PRK08649 192 VGGCVTYTTALHLMRTGAAGVLVG-IGP-GAACTS-----------RGVL------------GIGVPMATAIADVAAARR 246 (368)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEEC-CCC-CcCCCC-----------cccC------------CCCcCHHHHHHHHHHHHH
Confidence 7 6999999999999999999874 332 111100 0000 11112 222222221
Q ss_pred -----c--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 219 -----L--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 219 -----~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
. .++||| |+|||+++.|+.+++.+|||+|++|+.|+.++
T Consensus 247 ~~l~~~~~~~vpVI--AdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~ 292 (368)
T PRK08649 247 DYLDETGGRYVHVI--ADGGIGTSGDIAKAIACGADAVMLGSPLARAA 292 (368)
T ss_pred HhhhhhcCCCCeEE--EeCCCCCHHHHHHHHHcCCCeecccchhcccc
Confidence 1 158998 89999999999999999999999999999843
|
|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-10 Score=102.41 Aligned_cols=180 Identities=16% Similarity=0.215 Sum_probs=111.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCC---CCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGV---ARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~---~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~ 121 (310)
+.++.+.++|++++ +++ ...+. .....++.++++++.++.|+.+..... ..+.++.+.++|+|+|+.+
T Consensus 16 ~~~~~~~~~G~~~i-~l~-------~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh 87 (211)
T cd00429 16 EELKRLEEAGADWI-HID-------VMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFH 87 (211)
T ss_pred HHHHHHHHcCCCEE-EEe-------cccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEC
Confidence 67888999999987 663 00110 001125788888876656665544433 2356788889999998644
Q ss_pred CCC--CchhHHHHHHhcCCCCcEEEecC--CHHHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecccC
Q 021609 122 EVL--TPADEENHINKHNFRIPFVCGCR--NLGEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 122 ~~~--~~~~~~~~i~~~~~~i~~~v~~~--t~~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
... ...+..+.+++ .++.++.+++ +..+..+....++|++.+.+. +.++. ..
T Consensus 88 ~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~-------------------~~- 145 (211)
T cd00429 88 AEATDHLHRTIQLIKE--LGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQ-------------------KF- 145 (211)
T ss_pred ccchhhHHHHHHHHHH--CCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCc-------------------cc-
Confidence 432 22333344433 4555555543 344444444455898865432 11111 00
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcC-----CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.....+.++++++.. ++|++ +.|||+ ++++.++.+.|+|++++||+|++++||...++++
T Consensus 146 ----------~~~~~~~i~~~~~~~~~~~~~~pi~--v~GGI~-~env~~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 146 ----------IPEVLEKIRKLRELIPENNLNLLIE--VDGGIN-LETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred ----------CHHHHHHHHHHHHHHHhcCCCeEEE--EECCCC-HHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 011133344444332 47987 569995 7999999999999999999999999998887765
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-10 Score=101.72 Aligned_cols=155 Identities=23% Similarity=0.240 Sum_probs=103.1
Q ss_pred HHHHHHHHhhc-Ccceeecccc-Cc-HHHHHHHHHcCCCEEEeCCCCC---chhHHHHHHhcCCCCcEEEec---CC-HH
Q 021609 81 PQLIKEIKQSV-TIPVMAKARI-GH-FVEAQILEAIGIDYVDESEVLT---PADEENHINKHNFRIPFVCGC---RN-LG 150 (310)
Q Consensus 81 ~~~i~~i~~~~-~iPv~vk~~~-~~-~~~a~~~~~aGad~Vi~~~~~~---~~~~~~~i~~~~~~i~~~v~~---~t-~~ 150 (310)
++.++++++.+ +.++.+...+ +. ...++.+.++|||.+..+...+ +.++.+.+++ .++.+++++ .+ .+
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~--~g~~~~~~~~~~~t~~~ 117 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDATIKGAVKAAKK--HGKEVQVDLINVKDKVK 117 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHH--cCCEEEEEecCCCChHH
Confidence 67888888774 5556654322 21 1357889999999996332222 3455556554 467776654 33 36
Q ss_pred HHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC-CCEEEeCC
Q 021609 151 EALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR-LPVVHFAA 229 (310)
Q Consensus 151 ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~-iPVi~iA~ 229 (310)
++..+.+.|+|+|.+++ ++.+. .......+.++++++..+ .++. +.
T Consensus 118 ~~~~~~~~g~d~v~~~p-g~~~~------------------------------~~~~~~~~~i~~l~~~~~~~~i~--v~ 164 (206)
T TIGR03128 118 RAKELKELGADYIGVHT-GLDEQ------------------------------AKGQNPFEDLQTILKLVKEARVA--VA 164 (206)
T ss_pred HHHHHHHcCCCEEEEcC-CcCcc------------------------------cCCCCCHHHHHHHHHhcCCCcEE--EE
Confidence 77778888999999863 22111 001123445555555433 4444 36
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
||| +++++.+++++|+|++++||+|++++||...++.+++.
T Consensus 165 GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 165 GGI-NLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred CCc-CHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 999 79999999999999999999999999998888877643
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=107.62 Aligned_cols=198 Identities=19% Similarity=0.169 Sum_probs=124.4
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-c----HHHHHHHHHcCCCEEE
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-H----FVEAQILEAIGIDYVD 119 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~----~~~a~~~~~aGad~Vi 119 (310)
..+|+.+.+.|+...+.- .. ...++.+++. ...|+.+++... . .+.++.+.+.|++.+.
T Consensus 84 ~~la~aa~~~g~~~~~~~---------~~----~~~~~~i~~~---~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~ 147 (299)
T cd02809 84 LATARAAAAAGIPFTLST---------VS----TTSLEEVAAA---APGPRWFQLYVPRDREITEDLLRRAEAAGYKALV 147 (299)
T ss_pred HHHHHHHHHcCCCEEecC---------CC----cCCHHHHHHh---cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEE
Confidence 367888899998754221 00 1124544433 346888876543 2 2345666789999996
Q ss_pred eCCCCCc------hhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 120 ESEVLTP------ADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 120 ~~~~~~~------~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
.+-+.+. .+..+.+++. .++++++- +.+.++++++.+.|+|.|.++++++...
T Consensus 148 l~~~~p~~~~~~~~~~i~~l~~~-~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~~------------------- 207 (299)
T cd02809 148 LTVDTPVLGRRLTWDDLAWLRSQ-WKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQL------------------- 207 (299)
T ss_pred EecCCCCCCCCCCHHHHHHHHHh-cCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCCC-------------------
Confidence 3332222 2444555442 34565554 7899999999999999999987653210
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
+ ...++++.+.++++.. ++||+ ++|||+++.|+.+++.+|||+|++|++++.+. ...=.+
T Consensus 208 ~-----------~g~~~~~~l~~i~~~~~~~ipvi--a~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~-----~~~g~~ 269 (299)
T cd02809 208 D-----------GAPATIDALPEIVAAVGGRIEVL--LDGGIRRGTDVLKALALGADAVLIGRPFLYGL-----AAGGEA 269 (299)
T ss_pred C-----------CCcCHHHHHHHHHHHhcCCCeEE--EeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHH-----HhcCHH
Confidence 0 1234467777776644 59998 89999999999999999999999999777411 000000
Q ss_pred HHhccCChhhhhhhhhhcccchhcccCccch
Q 021609 271 AVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 271 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
.+ .+.+..+.+.+...|..+|.+.++
T Consensus 270 ~v-----~~~i~~l~~el~~~m~~~G~~~i~ 295 (299)
T cd02809 270 GV-----AHVLEILRDELERAMALLGCASLA 295 (299)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHCCCCHH
Confidence 00 223445666666667666665543
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-11 Score=116.58 Aligned_cols=195 Identities=22% Similarity=0.274 Sum_probs=105.0
Q ss_pred ceeEEEeeCCce-eeeec-cCcceeecchhhhhhCcc-cccC---C----CHHH-HHHHHHcCCcEE-EeccCCcccccc
Q 021609 4 TGVVAVYGNDGA-ITETK-KSPFSVKVGLAQMLRGGV-IMDV---V----TPEQ-ARVAEEAGACAV-MALERVPADIRS 71 (310)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~-i~~~---~----~~~~-A~~~~~~Ga~~i-~~L~~~~~~~~~ 71 (310)
+|++...||.++ +.+++ ...|...+.... .+. +.++ + +++. .+.....+|+++ +.+|+.......
T Consensus 81 ~g~~~~~Gs~~~~~~~~e~~~~~~~vr~~~~---~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~ 157 (326)
T cd02811 81 LGIAMGVGSQRAALEDPELAESFTVVREAPP---NGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQP 157 (326)
T ss_pred cCCCeEecCchhhccChhhhhHHHHHHHhCC---CceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCC
Confidence 577788898876 55555 455554333222 111 1111 1 4444 444455788887 566632222121
Q ss_pred cCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHH
Q 021609 72 QGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGE 151 (310)
Q Consensus 72 ~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~e 151 (310)
.+...+....+.++.+++.+++||++|.... ..+.++
T Consensus 158 ~~~~df~~~~~~i~~l~~~~~vPVivK~~g~-------------------------------------------g~s~~~ 194 (326)
T cd02811 158 EGDRDFRGWLERIEELVKALSVPVIVKEVGF-------------------------------------------GISRET 194 (326)
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEEecCC-------------------------------------------CCCHHH
Confidence 1111111123678888888999999986421 012344
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcC-CCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLG-RLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~-~iPVi~iA~ 229 (310)
++++.+.|+|.|.++|.+++... ..+.+|...........+ .+. .+....+.++++.. ++||+ ++
T Consensus 195 a~~l~~~Gvd~I~vsG~GGt~~~--~ie~~r~~~~~~~~~~~~---------~~~g~~t~~~l~~~~~~~~~ipIi--as 261 (326)
T cd02811 195 AKRLADAGVKAIDVAGAGGTSWA--RVENYRAKDSDQRLAEYF---------ADWGIPTAASLLEVRSALPDLPLI--AS 261 (326)
T ss_pred HHHHHHcCCCEEEECCCCCCccc--cccccccccccccccccc---------ccccccHHHHHHHHHHHcCCCcEE--EE
Confidence 55555566666666554332210 011111000000000000 011 12244555565544 79998 89
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
|||+++.|+.+++.+|||+|.+|+++++
T Consensus 262 GGIr~~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 262 GGIRNGLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred CCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence 9999999999999999999999999886
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-10 Score=99.09 Aligned_cols=162 Identities=18% Similarity=0.270 Sum_probs=114.1
Q ss_pred HHHHHHHHhhc-CcceeeccccCc--HHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-cCCCCcEEE---ecCCHHHHH
Q 021609 81 PQLIKEIKQSV-TIPVMAKARIGH--FVEAQILEAIGIDYVDESEVLTPADEENHINK-HNFRIPFVC---GCRNLGEAL 153 (310)
Q Consensus 81 ~~~i~~i~~~~-~iPv~vk~~~~~--~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~~~~i~~~v---~~~t~~ea~ 153 (310)
.+.++++|+.+ +.++++....-+ ...++.+.++|||.+......+...+...++. +.++..+.+ ...|++++.
T Consensus 44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~ 123 (217)
T COG0269 44 MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRA 123 (217)
T ss_pred HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHH
Confidence 57888998875 677777665432 35789999999999964333334444444433 334544444 467788877
Q ss_pred HHHH-hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC--CCEEEeCCC
Q 021609 154 RRIR-EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR--LPVVHFAAG 230 (310)
Q Consensus 154 ~~~~-~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~--iPVi~iA~G 230 (310)
+-.+ +|+|++.+|-.. + .. +.+....++.+..+++..+ .++. ..|
T Consensus 124 ~~l~~~gvd~~~~H~g~---D-----------------~q----------~~G~~~~~~~l~~ik~~~~~g~~vA--VaG 171 (217)
T COG0269 124 KWLKELGVDQVILHRGR---D-----------------AQ----------AAGKSWGEDDLEKIKKLSDLGAKVA--VAG 171 (217)
T ss_pred HHHHHhCCCEEEEEecc---c-----------------Hh----------hcCCCccHHHHHHHHHhhccCceEE--Eec
Confidence 7665 999999998421 1 00 0122333556666666544 4665 479
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
|| +++++..+...|++.++|||+|+++.||...++.|.+.++.+
T Consensus 172 GI-~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~~ 215 (217)
T COG0269 172 GI-TPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDKI 215 (217)
T ss_pred CC-CHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhcc
Confidence 99 799999999999999999999999999999999999988643
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3e-10 Score=102.81 Aligned_cols=174 Identities=16% Similarity=0.142 Sum_probs=109.8
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccccccCCCCC----C-----CCHHHHHHHHhhcCcceeecccc-----CcHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALE-RVPADIRSQGGVAR----M-----SDPQLIKEIKQSVTIPVMAKARI-----GHFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~----~-----~~~~~i~~i~~~~~iPv~vk~~~-----~~~~~a~~~ 110 (310)
+.++.++++ ++.+ +|| |.+..... | ... . ..++.++++++.+++|+.+.... +....++.+
T Consensus 22 ~~~~~l~~~-ad~i-Elgip~sdp~ad-G-~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~ 97 (244)
T PRK13125 22 EFIIGLVEL-VDIL-ELGIPPKYPKYD-G-PVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMA 97 (244)
T ss_pred HHHHHHHhh-CCEE-EECCCCCCCCCC-C-HHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHH
Confidence 567778787 9976 887 43321111 1 000 0 01468888888889998643211 334567899
Q ss_pred HHcCCCEEEeCCC-C----CchhHHHHHHhcCCCCcEEEecCC-HHHHHHHHHhCCCEE--EEcCCCCCcchHHHHHHHH
Q 021609 111 EAIGIDYVDESEV-L----TPADEENHINKHNFRIPFVCGCRN-LGEALRRIREGAAMI--RTKGEAGTGNIIEAVRHVR 182 (310)
Q Consensus 111 ~~aGad~Vi~~~~-~----~~~~~~~~i~~~~~~i~~~v~~~t-~~ea~~~~~~Gad~V--~v~g~~~~~~~~~~~~~~r 182 (310)
.++|+|+++.++. . ...++.+.+++++....+.+..+| .++.....+....++ ++++..++ .+
T Consensus 98 ~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g~-~~-------- 168 (244)
T PRK13125 98 RDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATGV-PL-------- 168 (244)
T ss_pred HHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCCC-Cc--------
Confidence 9999999987653 2 233455566655555555556555 455555666555554 45443321 10
Q ss_pred hhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.....+.++++++.. +.|++ ..|||++++++.+++++|||++++||+|++
T Consensus 169 -----------------------~~~~~~~i~~lr~~~~~~~i~--v~gGI~~~e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 169 -----------------------PVSVERNIKRVRNLVGNKYLV--VGFGLDSPEDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred -----------------------hHHHHHHHHHHHHhcCCCCEE--EeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 011133556666654 47887 689999999999999999999999999997
|
|
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=112.28 Aligned_cols=190 Identities=19% Similarity=0.188 Sum_probs=121.3
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-c-Ccceeecc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS-V-TIPVMAKA 99 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~-~iPv~vk~ 99 (310)
..|+|++|+++ +++...+++++++.++.++|.-+++.. ++.......+.|+++++. + +.|+.++.
T Consensus 8 ~~lgiryPii~---gpMa~Giss~eLVaAvs~AGgLG~lga----------g~l~~e~l~~~I~~ir~~lt~~~PfGVNL 74 (418)
T cd04742 8 EDYGLRYAYVA---GAMARGIASAELVVAMGKAGMLGFFGA----------GGLPLDEVEQAIERIQAALGNGEPYGVNL 74 (418)
T ss_pred HHhCCCccEEC---CcccCCCCCHHHHHHHHhCCCeeeecC----------CCCCHHHHHHHHHHHHHhccCCCCeEEee
Confidence 46899999999 555447999999999999998776332 111111113466667775 4 78999987
Q ss_pred ccCc------HHHHHHHHHcCCCEEEeCCC--CCchhHHHHHHhcCCC----------CcEEEecC--------------
Q 021609 100 RIGH------FVEAQILEAIGIDYVDESEV--LTPADEENHINKHNFR----------IPFVCGCR-------------- 147 (310)
Q Consensus 100 ~~~~------~~~a~~~~~aGad~Vi~~~~--~~~~~~~~~i~~~~~~----------i~~~v~~~-------------- 147 (310)
.... .+.++.+.+.|+..|..+.- .++. +. ..+..+.. ..++..+.
T Consensus 75 ~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p~-~~-~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~ 152 (418)
T cd04742 75 IHSPDEPELEEGLVDLFLRHGVRVVEASAFMQLTPA-LV-RYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPE 152 (418)
T ss_pred ecCCCCchhHHHHHHHHHHcCCCEEEeccccCCCcc-hh-hHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCH
Confidence 6421 23467888999998864431 2221 11 22222110 11333322
Q ss_pred ------------CHHHHHHHHHhC-CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc---HH
Q 021609 148 ------------NLGEALRRIREG-AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP---YD 211 (310)
Q Consensus 148 ------------t~~ea~~~~~~G-ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~---~~ 211 (310)
|.+||..+.+.| +|.|.+. ...+||.- ..+. +.
T Consensus 153 ~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g------------------------------~~~~~~Llp 201 (418)
T cd04742 153 RILKKLLAEGKITEEQAELARRVPVADDITVE-ADSGGHTD------------------------------NRPLSVLLP 201 (418)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCC------------------------------CccHHhHHH
Confidence 678888888888 5999887 43344410 0111 12
Q ss_pred HHHHHhhcC--------CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 212 LVMQTKQLG--------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 212 ~i~~i~~~~--------~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+..+++.. ++||+ |+|||.|++++..++.+|||+|++||.+.-+.
T Consensus 202 ~v~~l~d~v~~~~~~~~~ipVi--AAGGI~tg~~vaAA~alGAd~V~~GT~flat~ 255 (418)
T cd04742 202 TIIRLRDELAARYGYRRPIRVG--AAGGIGTPEAAAAAFALGADFIVTGSINQCTV 255 (418)
T ss_pred HHHHHHHHHhhccccCCCceEE--EECCCCCHHHHHHHHHcCCcEEeeccHHHhCc
Confidence 222222222 58998 88999999999999999999999999999754
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-10 Score=101.34 Aligned_cols=189 Identities=15% Similarity=0.145 Sum_probs=121.8
Q ss_pred HHHHHHHHcCCcEE-Eec-cCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccC-cHHHHHHHHHcCCCEEEe-
Q 021609 46 EQARVAEEAGACAV-MAL-ERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIG-HFVEAQILEAIGIDYVDE- 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~- 120 (310)
+..++++++|++++ +|+ +.....--.++ ++.++.+++. +++|+-+.+-.. ....++.+.++|+|.+..
T Consensus 16 ~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg-------~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~H 88 (220)
T PRK08883 16 EDVEKVLAAGADVVHFDVMDNHYVPNLTFG-------APICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFH 88 (220)
T ss_pred HHHHHHHHcCCCEEEEecccCcccCccccC-------HHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEc
Confidence 67888899999998 443 11111111233 7899999987 689988876543 456678899999999952
Q ss_pred CCC-CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecccChh
Q 021609 121 SEV-LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 121 ~~~-~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d 197 (310)
... ..+....+.+++.+...-+.....|..+...-.-.-+|+|.+.+ ++++|- ..
T Consensus 89 ~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq---------------~f------- 146 (220)
T PRK08883 89 VEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQ---------------SF------- 146 (220)
T ss_pred ccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCc---------------ee-------
Confidence 222 23456667776655544445555565554443333456654332 222220 00
Q ss_pred HHHHhhhccCCcHHHHHHHhhcC-----CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 198 EVFTFAKKIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.....+.++++++.. ++|+. +.||| +.+++.++.++|||++++||+|++++||...++++++.+
T Consensus 147 --------i~~~lekI~~l~~~~~~~~~~~~I~--vdGGI-~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~ 215 (220)
T PRK08883 147 --------IPHTLDKLRAVRKMIDESGRDIRLE--IDGGV-KVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAEL 215 (220)
T ss_pred --------cHhHHHHHHHHHHHHHhcCCCeeEE--EECCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence 111233444444432 47887 45999 599999999999999999999999999999988888766
Q ss_pred hc
Q 021609 273 TH 274 (310)
Q Consensus 273 ~~ 274 (310)
++
T Consensus 216 ~~ 217 (220)
T PRK08883 216 AK 217 (220)
T ss_pred Hh
Confidence 53
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.6e-11 Score=106.57 Aligned_cols=180 Identities=21% Similarity=0.256 Sum_probs=116.9
Q ss_pred HHHHHHHHcCCcEEEecc-CC-------ccccccc-----CCCCCCCCHHHHHHHHhhcCcceeeccccC------cHHH
Q 021609 46 EQARVAEEAGACAVMALE-RV-------PADIRSQ-----GGVARMSDPQLIKEIKQSVTIPVMAKARIG------HFVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~-------~~~~~~~-----~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~------~~~~ 106 (310)
+.++.++++|+|++ +++ |. +...+.. .|.+....++.++++++.+++|+.+....+ ....
T Consensus 18 ~~~~~l~~~Gad~i-el~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~f 96 (242)
T cd04724 18 EILKALVEAGADII-ELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLERF 96 (242)
T ss_pred HHHHHHHHCCCCEE-EECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHH
Confidence 67889999999987 665 21 1111110 133323447888899988899987744433 2566
Q ss_pred HHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHH-HHHHHHhCCCEEEEcCC-CCCcchHHHHHHHH
Q 021609 107 AQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGE-ALRRIREGAAMIRTKGE-AGTGNIIEAVRHVR 182 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~e-a~~~~~~Gad~V~v~g~-~~~~~~~~~~~~~r 182 (310)
++.+.++|+|+++.++.- +..++.+.+++++.....++..+|..+ .+...+...++|.+.+. +.+|.-
T Consensus 97 i~~~~~aG~~giiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~-------- 168 (242)
T cd04724 97 LRDAKEAGVDGLIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGAR-------- 168 (242)
T ss_pred HHHHHHCCCcEEEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCc--------
Confidence 899999999999876641 223445555556666556666666544 44455545555443221 112210
Q ss_pred hhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+ . ......+.++++++..++|++ ..|||++++++.++.++ ||+++|||+|++
T Consensus 169 ----------~-~---------~~~~~~~~i~~lr~~~~~pI~--vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 169 ----------T-E---------LPDDLKELIKRIRKYTDLPIA--VGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred ----------c-C---------CChhHHHHHHHHHhcCCCcEE--EEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 0 0 012235678888887789998 58999999999999999 999999999996
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.8e-11 Score=112.71 Aligned_cols=159 Identities=24% Similarity=0.319 Sum_probs=104.5
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHH----HHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKE----IKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~----i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.++|+|+| +|| |.++..+...|+.++.+++.+.+ +++++++||.+|.+++..+.
T Consensus 81 ~aA~~~~~~g~d~I-dlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~------------ 147 (333)
T PRK11815 81 EAAKLAEDWGYDEI-NLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQ------------ 147 (333)
T ss_pred HHHHHHHhcCCCEE-EEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCC------------
Confidence 45777788999987 888 55554444447777777765554 56667999999998763110
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCC--CcchHHHHHHHHhhccceEeecccCh
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG--TGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~--~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
.+..+.. +-+..+.+.|++.+.+|++.. ++. . ..
T Consensus 148 -----~t~~~~~-------------------~~~~~l~~aG~d~i~vh~Rt~~~~g~------------------~--~~ 183 (333)
T PRK11815 148 -----DSYEFLC-------------------DFVDTVAEAGCDTFIVHARKAWLKGL------------------S--PK 183 (333)
T ss_pred -----cCHHHHH-------------------HHHHHHHHhCCCEEEEcCCchhhcCC------------------C--cc
Confidence 0001111 123445678999999987642 110 0 00
Q ss_pred hHHHHhhhc-cCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 197 DEVFTFAKK-IAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 197 d~~~~~~~~-~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.. .. ....++.++++++.. ++||+ ++|||.|++|+.++++ |||+|++|++++. ||+...+ +.+.+
T Consensus 184 ~~-----~~~~~~~~~~i~~v~~~~~~iPVI--~nGgI~s~eda~~~l~-~aDgVmIGRa~l~--nP~~~~~-~~~~~ 250 (333)
T PRK11815 184 EN-----REIPPLDYDRVYRLKRDFPHLTIE--INGGIKTLEEAKEHLQ-HVDGVMIGRAAYH--NPYLLAE-VDREL 250 (333)
T ss_pred cc-----ccCCCcCHHHHHHHHHhCCCCeEE--EECCcCCHHHHHHHHh-cCCEEEEcHHHHh--CCHHHHH-HHHHh
Confidence 00 00 123478888888764 89998 7899999999999886 7999999999997 8874443 44433
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=7e-11 Score=110.04 Aligned_cols=163 Identities=26% Similarity=0.298 Sum_probs=101.0
Q ss_pred HHHHHHHHcCCcEEEecc-CCccc-ccccCCCCCCCCHHHHHH----HHhhcCcceeeccccCc---HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALE-RVPAD-IRSQGGVARMSDPQLIKE----IKQSVTIPVMAKARIGH---FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~-~~~~~G~~~~~~~~~i~~----i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad 116 (310)
+.|+.+++.|+++| +|| .+|.. .+...|+..+.+++.+.+ +++.+++||++|.+.+. .+.++.+.++|+|
T Consensus 117 ~~a~~~~~~gad~i-elN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gad 195 (299)
T cd02940 117 ELAKLVEEAGADAL-ELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGAD 195 (299)
T ss_pred HHHHHHHhcCCCEE-EEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCC
Confidence 45777777899987 887 44432 223345666666665554 45667899999988642 3567888889999
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
+|+..+..... ..++..+. .....+|+++..+.. . .+
T Consensus 196 gi~~~Nt~~~~--------------~~id~~~~----------~~~~~~~~~~~~gg~-----------------s--G~ 232 (299)
T cd02940 196 GVSAINTVNSL--------------MGVDLDGT----------PPAPGVEGKTTYGGY-----------------S--GP 232 (299)
T ss_pred EEEEecccccc--------------cccccccC----------CccccccCCCCcCcc-----------------c--CC
Confidence 98633321000 00000000 001112332111100 0 00
Q ss_pred hHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
......++.+.++++.. ++||+ ++|||.+.+|+.+++.+|||+|++||+++.. .|.
T Consensus 233 -------a~~p~~l~~v~~~~~~~~~~ipIi--g~GGI~~~~da~~~l~aGA~~V~i~ta~~~~-g~~ 290 (299)
T cd02940 233 -------AVKPIALRAVSQIARAPEPGLPIS--GIGGIESWEDAAEFLLLGASVVQVCTAVMNQ-GFT 290 (299)
T ss_pred -------CcchHHHHHHHHHHHhcCCCCcEE--EECCCCCHHHHHHHHHcCCChheEceeeccc-CCc
Confidence 00112367888888877 89998 8899999999999999999999999999983 554
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-10 Score=100.22 Aligned_cols=187 Identities=14% Similarity=0.131 Sum_probs=110.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++.+.++|+++| +++-... .+. .+....++.++++++.+..|+.+..... ..+.++.+.++|+|++..+...
T Consensus 20 ~~~~~~~~~G~~~i-~l~~~d~---~~~-~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~vh~~~ 94 (220)
T PRK05581 20 EEVKAVEAAGADWI-HVDVMDG---HFV-PNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITFHVEA 94 (220)
T ss_pred HHHHHHHHcCCCEE-EEeCccC---CcC-CCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEeecc
Confidence 68889999999987 6631000 000 0001136788888876654543433332 2345677789999997544322
Q ss_pred --CchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecccChhH
Q 021609 125 --TPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 125 --~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~ 198 (310)
.+.+..+.++. .++.+++.+ +|..+..+....++|++.+.+. +.++. ..
T Consensus 95 ~~~~~~~~~~~~~--~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-------------------~~---- 149 (220)
T PRK05581 95 SEHIHRLLQLIKS--AGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQ-------------------KF---- 149 (220)
T ss_pred chhHHHHHHHHHH--cCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcc-------------------cc----
Confidence 22333344433 455555554 4555555555556888765432 22221 00
Q ss_pred HHHhhhccCCcHHHHHHHhhcC---CCC--EEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 199 VFTFAKKIAAPYDLVMQTKQLG---RLP--VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 199 ~~~~~~~~~~~~~~i~~i~~~~---~iP--Vi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.....+.++++++.. ++| +. +.||| +++++.++.+.|+|+|++||+|++++||...+++|.+.+
T Consensus 150 -------~~~~~~~i~~~~~~~~~~~~~~~i~--v~GGI-~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~~ 218 (220)
T PRK05581 150 -------IPEVLEKIRELRKLIDERGLDILIE--VDGGI-NADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAEL 218 (220)
T ss_pred -------cHHHHHHHHHHHHHHHhcCCCceEE--EECCC-CHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHh
Confidence 011123333333321 222 43 46999 579999999999999999999999999999988887653
|
|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=109.16 Aligned_cols=162 Identities=16% Similarity=0.146 Sum_probs=110.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+.+.++.++|++++ +| |.+.-+. +....+.++++++.+++++++++. ++.+.+.|+|+|. ...
T Consensus 148 ~~~~~~l~~g~~~v-ql-------R~k~~~~~~~~~~~~~l~~~~~~~~~~liind~------~~la~~~~~~GvHl~~~ 213 (312)
T PRK08999 148 ARLERALAAGIRLI-QL-------RAPQLPPAAYRALARAALGLCRRAGAQLLLNGD------PELAEDLGADGVHLTSA 213 (312)
T ss_pred HHHHHHHHCCCcEE-EE-------eCCCCCHHHHHHHHHHHHHHHHHhCCEEEEECc------HHHHHhcCCCEEEcChh
Confidence 34566678898876 76 2221110 111133444555667899998764 4578889999996 444
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
++...+.++ .+.+..++++|||.+++.++.+.|+||+.+..- ++|.++.+
T Consensus 214 d~~~~~~r~----~~~~~~ig~S~h~~~~~~~a~~~~~dyi~~gpv----------------------f~t~tk~~---- 263 (312)
T PRK08999 214 QLAALAARP----LPAGRWVAASCHDAEELARAQRLGVDFAVLSPV----------------------QPTASHPG---- 263 (312)
T ss_pred hcChHhhcc----CCCCCEEEEecCCHHHHHHHHhcCCCEEEECCC----------------------cCCCCCCC----
Confidence 444333321 345688999999999999999999999987542 22222210
Q ss_pred hhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 203 AKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
.....++.++++++..++||+++ ||| +++++.+++++|++||.+-|+|.
T Consensus 264 --~~~~g~~~~~~~~~~~~~Pv~Ai--GGI-~~~~~~~~~~~g~~gva~i~~~~ 312 (312)
T PRK08999 264 --AAPLGWEGFAALIAGVPLPVYAL--GGL-GPGDLEEAREHGAQGIAGIRGLW 312 (312)
T ss_pred --CCCCCHHHHHHHHHhCCCCEEEE--CCC-CHHHHHHHHHhCCCEEEEEEEeC
Confidence 01223667777887788999955 999 79999999999999999998874
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=114.52 Aligned_cols=192 Identities=21% Similarity=0.245 Sum_probs=106.3
Q ss_pred ceeEEEeeCCce-eeeec-cCcceeecchhhhhhCcccccCC-------CHH-HHHHHHHcCCcEE-EeccCCccccccc
Q 021609 4 TGVVAVYGNDGA-ITETK-KSPFSVKVGLAQMLRGGVIMDVV-------TPE-QARVAEEAGACAV-MALERVPADIRSQ 72 (310)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~i~~~~-------~~~-~A~~~~~~Ga~~i-~~L~~~~~~~~~~ 72 (310)
+|+...+||.++ +.+++ .+.|...+.... ...++.++. +++ ..++....+|+++ +.+|+.++.....
T Consensus 82 ~g~~~~~Gs~~~~~~~~~~~~~~~~vr~~~~--~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~ 159 (333)
T TIGR02151 82 LGIPMGVGSQRAALKDPETADTFEVVREEAP--NGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPE 159 (333)
T ss_pred cCCCeEEcCchhhccChhhHhHHHHHHHhCC--CCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCC
Confidence 578889999886 66666 555543333222 122233221 132 3444455667766 4666322222222
Q ss_pred CCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHH
Q 021609 73 GGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEA 152 (310)
Q Consensus 73 ~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea 152 (310)
+...+....+.++.+++.+++||++|..... .+.+.+
T Consensus 160 g~~~f~~~le~i~~i~~~~~vPVivK~~g~g-------------------------------------------~~~~~a 196 (333)
T TIGR02151 160 GDRNFKGWLEKIAEICSQLSVPVIVKEVGFG-------------------------------------------ISKEVA 196 (333)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEecCCC-------------------------------------------CCHHHH
Confidence 2111111237888899999999999964210 123445
Q ss_pred HHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEee--cccChhHHHHhhhcc-CCcHHHHHHHhh-cCCCCEEEeC
Q 021609 153 LRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVL--RNMDDDEVFTFAKKI-AAPYDLVMQTKQ-LGRLPVVHFA 228 (310)
Q Consensus 153 ~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l--~~~~~d~~~~~~~~~-~~~~~~i~~i~~-~~~iPVi~iA 228 (310)
+++.++|+|+|.++|++++... ..+..|.. +.. .++. +. .+..+.+.++++ ..++||+ +
T Consensus 197 ~~L~~aGvd~I~Vsg~gGt~~~--~ie~~r~~----~~~~~~~~~---------~~g~~t~~~l~~~~~~~~~ipVI--a 259 (333)
T TIGR02151 197 KLLADAGVSAIDVAGAGGTSWA--QVENYRAK----GSNLASFFN---------DWGIPTAASLLEVRSDAPDAPII--A 259 (333)
T ss_pred HHHHHcCCCEEEECCCCCCccc--chhhhccc----ccccchhhh---------cccHhHHHHHHHHHhcCCCCeEE--E
Confidence 5556666666666665433210 11111100 000 0000 11 112334555554 3579998 8
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 229 AGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+|||+++.|+.+++.+|||+|++|++++.
T Consensus 260 sGGI~~~~di~kaLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 260 SGGLRTGLDVAKAIALGADAVGMARPFLK 288 (333)
T ss_pred ECCCCCHHHHHHHHHhCCCeehhhHHHHH
Confidence 99999999999999999999999999995
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-10 Score=105.49 Aligned_cols=190 Identities=15% Similarity=0.131 Sum_probs=123.6
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHH
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFV 105 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~ 105 (310)
.|++. .-+..+++.++|..+.+.|.-.+++-+ +. .....+.+++++... .+.+.+.....+.+
T Consensus 47 iPii~----AnMdTV~~~~mA~~la~~g~~~~iHk~--------~~---~e~~~~fv~~~~~~~~~~~~vavG~~~~d~e 111 (346)
T PRK05096 47 VPIIA----ANMDTVGTFEMAKALASFDILTAVHKH--------YS---VEEWAAFVNNSSADVLKHVMVSTGTSDADFE 111 (346)
T ss_pred CceEe----cCCCccccHHHHHHHHHCCCeEEEecC--------CC---HHHHHHHHHhccccccceEEEEecCCHHHHH
Confidence 56666 457788999999999999877654421 11 000022333333222 22233333323467
Q ss_pred HHHHHHH--cCCCEEE--eCCCC--CchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 106 EAQILEA--IGIDYVD--ESEVL--TPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 106 ~a~~~~~--aGad~Vi--~~~~~--~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.++.+.+ +|+|.++ .++.- ...+.++.+++..+++.++++ +-|.+-++.++++|+|.|++.- +.|.+|++
T Consensus 112 r~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGI--GpGSiCtT- 188 (346)
T PRK05096 112 KTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGI--GPGSVCTT- 188 (346)
T ss_pred HHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcc--cCCccccC-
Confidence 7888887 5999995 45543 345667777776678888887 8899999999999999998752 22333321
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHHh---hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQTK---QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i~---~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
++... .+.| +..+.+.. ...++||| |.|||+++-|+.+++.+|||.||+|+.
T Consensus 189 ----------r~vtG------------vG~PQltAV~~~a~~a~~~gvpiI--ADGGi~~sGDI~KAlaaGAd~VMlGsl 244 (346)
T PRK05096 189 ----------RVKTG------------VGYPQLSAVIECADAAHGLGGQIV--SDGGCTVPGDVAKAFGGGADFVMLGGM 244 (346)
T ss_pred ----------ccccc------------cChhHHHHHHHHHHHHHHcCCCEE--ecCCcccccHHHHHHHcCCCEEEeChh
Confidence 12222 2222 22333322 23578998 899999999999999999999999999
Q ss_pred cccCC
Q 021609 255 VFKSG 259 (310)
Q Consensus 255 i~~a~ 259 (310)
|..++
T Consensus 245 lAGt~ 249 (346)
T PRK05096 245 LAGHE 249 (346)
T ss_pred hcCcc
Confidence 98754
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.9e-10 Score=105.50 Aligned_cols=190 Identities=18% Similarity=0.213 Sum_probs=123.9
Q ss_pred ceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC
Q 021609 24 FSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG 102 (310)
Q Consensus 24 ~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~ 102 (310)
+.+..|++- --|....+.++|+.+.+.|.-.++ + | . +++......+.. +..+.++...+
T Consensus 34 ~~l~~P~~i----nAM~t~iN~~LA~~a~~~G~~~~~-~-------k-~-------~~e~~~~~~r~~~~~~l~v~~~vg 93 (326)
T PRK05458 34 RTFKLPVVP----ANMQTIIDEKIAEWLAENGYFYIM-H-------R-F-------DPEARIPFIKDMHEQGLIASISVG 93 (326)
T ss_pred cEecCcEEE----ecccchhHHHHHHHHHHcCCEEEE-e-------c-C-------CHHHHHHHHHhccccccEEEEEec
Confidence 344455555 112234556899999888866542 2 2 1 134433333333 22334443332
Q ss_pred ----cHHHHHHHHHcCC--CEEE--eCCC--CCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCC
Q 021609 103 ----HFVEAQILEAIGI--DYVD--ESEV--LTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 103 ----~~~~a~~~~~aGa--d~Vi--~~~~--~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~ 171 (310)
..+.+..+.++|+ |.+. .++. ....++++.+++..+++++++ ++.|.++++.+.++|+|++.+++..++
T Consensus 94 ~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~ 173 (326)
T PRK05458 94 VKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGK 173 (326)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCc
Confidence 3477888999965 9984 4443 335567777776667788888 499999999999999999988765442
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHH--HHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYD--LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~--~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
..+ + +... ....++|. .+..+.+..++||| |+|||+++.|+.+++.+|||+|
T Consensus 174 ~~~-t------------~~~~-----------g~~~~~w~l~ai~~~~~~~~ipVI--AdGGI~~~~Di~KaLa~GA~aV 227 (326)
T PRK05458 174 VCI-T------------KIKT-----------GFGTGGWQLAALRWCAKAARKPII--ADGGIRTHGDIAKSIRFGATMV 227 (326)
T ss_pred ccc-c------------cccc-----------CCCCCccHHHHHHHHHHHcCCCEE--EeCCCCCHHHHHHHHHhCCCEE
Confidence 110 0 0000 01133333 47777776789998 8999999999999999999999
Q ss_pred EEccccccCC
Q 021609 250 FVGSGVFKSG 259 (310)
Q Consensus 250 ~VGsai~~a~ 259 (310)
++|++|++..
T Consensus 228 ~vG~~~~~~~ 237 (326)
T PRK05458 228 MIGSLFAGHE 237 (326)
T ss_pred EechhhcCCc
Confidence 9999999643
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.7e-10 Score=96.77 Aligned_cols=155 Identities=17% Similarity=0.186 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++.+.++|++++ ++. ... ....+.++.+++.+. +++.+.... ..+.++.+.++|+|++..+..
T Consensus 20 ~~~~~l~~~G~~~v-ev~-------~~~----~~~~~~i~~l~~~~~~~~iGag~v~-~~~~~~~a~~~Ga~~i~~p~~- 85 (190)
T cd00452 20 ALAEALIEGGIRAI-EIT-------LRT----PGALEAIRALRKEFPEALIGAGTVL-TPEQADAAIAAGAQFIVSPGL- 85 (190)
T ss_pred HHHHHHHHCCCCEE-EEe-------CCC----hhHHHHHHHHHHHCCCCEEEEEeCC-CHHHHHHHHHcCCCEEEcCCC-
Confidence 57888899999987 552 111 112568888887764 555544432 247889999999999974332
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..++.+..+. .++.+++++.|.+|+.++.+.|+|++.++....
T Consensus 86 -~~~~~~~~~~--~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p~~~---------------------------------- 128 (190)
T cd00452 86 -DPEVVKAANR--AGIPLLPGVATPTEIMQALELGADIVKLFPAEA---------------------------------- 128 (190)
T ss_pred -CHHHHHHHHH--cCCcEECCcCCHHHHHHHHHCCCCEEEEcCCcc----------------------------------
Confidence 3455555443 467788899999999999999999999853210
Q ss_pred ccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 205 KIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
. ..+.++.++... ++|++ +.||| +++++.+++++|++++.+++.+++
T Consensus 129 --~-g~~~~~~l~~~~~~~p~~--a~GGI-~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 129 --V-GPAYIKALKGPFPQVRFM--PTGGV-SLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred --c-CHHHHHHHHhhCCCCeEE--EeCCC-CHHHHHHHHHCCCEEEEEchhcch
Confidence 1 244566665543 58998 67999 899999999999999999999993
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-10 Score=109.25 Aligned_cols=184 Identities=20% Similarity=0.229 Sum_probs=124.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc-c--CcHHHHHHHHHcCCCEEEeCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR-I--GHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~-~--~~~~~a~~~~~aGad~Vi~~~ 122 (310)
+.++.+.+.|++++ +.+ .|.. ..+ ..+.++++++.+..+.++.+. . ....+++.+.++|+|+|+...
T Consensus 20 ~~~~~~~~~Gv~~i-e~g-~p~~-~~~-------~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g 89 (430)
T PRK07028 20 EIAKEAVAGGADWI-EAG-TPLI-KSE-------GMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVCILG 89 (430)
T ss_pred HHHHHHHhcCCcEE-EeC-CHHH-HHh-------hHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEEEec
Confidence 45666677899987 542 1110 111 157888888877667766541 1 123478899999999997432
Q ss_pred C---CCchhHHHHHHhcCCCCcEEE---ecCC-HHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccC
Q 021609 123 V---LTPADEENHINKHNFRIPFVC---GCRN-LGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 123 ~---~~~~~~~~~i~~~~~~i~~~v---~~~t-~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
. ....+..+.++++ ++.+++ +++| .+.+..+.+.|+|+|.++. ++++.
T Consensus 90 ~~~~~~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p-g~~~~---------------------- 144 (430)
T PRK07028 90 LADDSTIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVHV-GIDQQ---------------------- 144 (430)
T ss_pred CCChHHHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe-ccchh----------------------
Confidence 1 1233455555554 444443 5555 4556777889999998763 22110
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
......++.++++++..++|++ +.||| +.+++.+++++|+|++++||+|++++||...++.|++.++++
T Consensus 145 --------~~~~~~~~~l~~l~~~~~iPI~--a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~~ 213 (430)
T PRK07028 145 --------MLGKDPLELLKEVSEEVSIPIA--VAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDSG 213 (430)
T ss_pred --------hcCCChHHHHHHHHhhCCCcEE--EECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhcc
Confidence 0012235677778776679998 56999 699999999999999999999999999999999999988764
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-10 Score=106.97 Aligned_cols=242 Identities=22% Similarity=0.336 Sum_probs=148.2
Q ss_pred cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEecc------CCcc--cccccC-----------------CC
Q 021609 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALE------RVPA--DIRSQG-----------------GV 75 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~------~~~~--~~~~~~-----------------G~ 75 (310)
.+.|.+..|++. ..+..++++.++..+.+.|+.+++..+ ..+. ..+-++ +.
T Consensus 38 i~~~~l~~Pivl----APMagVtd~~fr~~~~~~Galgvvsaegl~~~~~~~~~~~~QI~g~~~~~~~a~aa~~~~e~~~ 113 (369)
T TIGR01304 38 IDAYRFELPFIA----HPMDALVSPEFAIELGELGGLGVLNLEGLWGRHEDPDPAIAKIAEAYEEGDQAAATRLLQELHA 113 (369)
T ss_pred EcceecCCceee----cCCCcccCHHHHHHHHHcCCcccccchHHHhcCCCHHHHHHHHhhcCCChHHHHHHHHHHHcCC
Confidence 456667778777 778889999999999999997664432 0000 000000 00
Q ss_pred CCCCCHHHH----HHHHhhcCcceeeccccC---cHHHHHHHHHcCCCEEEeC----------CCCCchhHHHHHHhcCC
Q 021609 76 ARMSDPQLI----KEIKQSVTIPVMAKARIG---HFVEAQILEAIGIDYVDES----------EVLTPADEENHINKHNF 138 (310)
Q Consensus 76 ~~~~~~~~i----~~i~~~~~iPv~vk~~~~---~~~~a~~~~~aGad~Vi~~----------~~~~~~~~~~~i~~~~~ 138 (310)
....++.+ +++++. .+.++.+++ ..+.++.+.++|+|.+... ..-++.++.+.++. .
T Consensus 114 -~~~~p~l~~~ii~~vr~a---~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~--~ 187 (369)
T TIGR01304 114 -APLKPELLGERIAEVRDS---GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE--L 187 (369)
T ss_pred -CccChHHHHHHHHHHHhc---ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH--C
Confidence 11224443 344443 377777664 3577899999999999632 11235555565543 4
Q ss_pred CCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHH
Q 021609 139 RIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQT 216 (310)
Q Consensus 139 ~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i 216 (310)
++++++ ++.|.++++++.+.|+|.|.. +++++.. . +... .. .+....+..+
T Consensus 188 ~IPVI~G~V~t~e~A~~~~~aGaDgV~~-G~gg~~~-~-------------~~~l------------g~~~p~~~ai~d~ 240 (369)
T TIGR01304 188 DVPVIAGGVNDYTTALHLMRTGAAGVIV-GPGGANT-T-------------RLVL------------GIEVPMATAIADV 240 (369)
T ss_pred CCCEEEeCCCCHHHHHHHHHcCCCEEEE-CCCCCcc-c-------------cccc------------CCCCCHHHHHHHH
Confidence 678877 799999999999999999873 3322110 0 0000 00 1112222222
Q ss_pred h--------hcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCC-HHHHH--------------------
Q 021609 217 K--------QLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD-PVKRA-------------------- 265 (310)
Q Consensus 217 ~--------~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~d-p~~~a-------------------- 265 (310)
. +.. .+||| |+|||.+..|+.+++.+|||+|++|++|+.+.. |-.-.
T Consensus 241 ~~a~~~~~~e~g~r~vpVI--AdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~ 318 (369)
T TIGR01304 241 AAARRDYLDETGGRYVHVI--ADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESG 318 (369)
T ss_pred HHHHHHHHHhcCCCCceEE--EeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCcccccccc
Confidence 1 111 38998 899999999999999999999999999998542 21100
Q ss_pred --H---HHHHHHhcc-CChhhhhhhhhhcccchhcccCccch
Q 021609 266 --Q---AIVRAVTHY-SDPEVLAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 266 --~---~l~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
- .+.+.+..- ..+.+..++---+.++|--.|.+|+|
T Consensus 319 ~~~~~~~~~~~~~gp~~~~~~~~n~~g~~~~~~~~~g~~~~~ 360 (369)
T TIGR01304 319 TVGEAPTLEEILHGPSTLPDGVENFEGGLKRAMAKCGYTDLK 360 (369)
T ss_pred ccCCCCcHHHHeeCCCCCCcchhhhHHHHHHHHHHcCchhhh
Confidence 0 122222211 23445566667777888888888876
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=108.23 Aligned_cols=183 Identities=22% Similarity=0.323 Sum_probs=121.1
Q ss_pred HHHHHHHHcC-CcEEEecc-CCcccccccCCCCCCCCHHHHH----HHHhhcCcceeeccccCc---HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAG-ACAVMALE-RVPADIRSQGGVARMSDPQLIK----EIKQSVTIPVMAKARIGH---FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~G-a~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~----~i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad 116 (310)
+.+..+++.+ ++.+ .|| .+|... +|.....+++.+. .+++.+.+||.+|+.... .+.++.+.++|+|
T Consensus 113 d~~~~~~~~~~ad~i-elNiScPnt~---g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~D 188 (310)
T COG0167 113 DYARLLEEAGDADAI-ELNISCPNTP---GGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGAD 188 (310)
T ss_pred HHHHHHHhcCCCCEE-EEEccCCCCC---ChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCc
Confidence 4677888888 8876 888 555422 2333333455444 556677999999987642 3556888889999
Q ss_pred EEEeCCCCCchh-HHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCC-CCcchHHHHHHHHhhccceEeeccc
Q 021609 117 YVDESEVLTPAD-EENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEA-GTGNIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 117 ~Vi~~~~~~~~~-~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~-~~~~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
+++..+...... +. ..+. +. +--+..+ .+|...
T Consensus 189 gl~~~NT~~~~~~id---------------~~~~---------~~--~~~~~~GGLSG~~i------------------- 223 (310)
T COG0167 189 GLIAINTTKSGMKID---------------LETK---------KP--VLANETGGLSGPPL------------------- 223 (310)
T ss_pred EEEEEeecccccccc---------------cccc---------cc--ccCcCCCCcCcccc-------------------
Confidence 996333211000 00 0000 00 0001111 122100
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
..-...+++++.+.. ++|+| +.|||.|.+|+.+.+.+||+.|+|+|+++.. -| ...+++.+.+
T Consensus 224 -----------kp~al~~v~~l~~~~~~~ipII--GvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~-Gp-~i~~~I~~~l 288 (310)
T COG0167 224 -----------KPIALRVVAELYKRLGGDIPII--GVGGIETGEDALEFILAGASAVQVGTALIYK-GP-GIVKEIIKGL 288 (310)
T ss_pred -----------hHHHHHHHHHHHHhcCCCCcEE--EecCcCcHHHHHHHHHcCCchheeeeeeeee-Cc-hHHHHHHHHH
Confidence 011256777777764 49998 7899999999999999999999999999983 24 4667799999
Q ss_pred hccCChhhhhhhhhhcccch
Q 021609 273 THYSDPEVLAEVSCGLGEAM 292 (310)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~ 292 (310)
.++++++++.++++..|.+.
T Consensus 289 ~~~l~~~g~~si~d~iG~~~ 308 (310)
T COG0167 289 ARWLEEKGFESIQDIIGSAL 308 (310)
T ss_pred HHHHHHcCCCCHHHHhchhc
Confidence 99999999999999999764
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-09 Score=100.93 Aligned_cols=192 Identities=11% Similarity=0.085 Sum_probs=126.1
Q ss_pred eecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC--cceeeccccCc
Q 021609 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT--IPVMAKARIGH 103 (310)
Q Consensus 26 ~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--iPv~vk~~~~~ 103 (310)
...|++. .-+..+++.++|..+.+.|.-.+++-+ +. .....+.+++...... +.+.+.....+
T Consensus 44 ~~iPii~----AnMdtv~~~~mA~~la~~g~~~~iHk~--------~~---~e~~~~~v~~~~~~~~~~~~vsvG~~~~d 108 (343)
T TIGR01305 44 SGVPIIA----ANMDTVGTFEMAAALSQHSIFTAIHKH--------YS---VDEWKAFATNSSPDCLQNVAVSSGSSDND 108 (343)
T ss_pred eCCceEe----cCCCcccCHHHHHHHHHCCCeEEEeeC--------CC---HHHHHHHHHhhcccccceEEEEeccCHHH
Confidence 3466666 557788999999999999877664421 11 0000123333222222 22333333235
Q ss_pred HHHHHHHHHcC--CCEEE--eCCCC--CchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHH
Q 021609 104 FVEAQILEAIG--IDYVD--ESEVL--TPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIE 176 (310)
Q Consensus 104 ~~~a~~~~~aG--ad~Vi--~~~~~--~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~ 176 (310)
.+.++.+.++| +|.++ .++.- ...+.++.+++..++..++.+ +-|.+.++.++++|+|.|.+.-.. |.++.
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGp--GSict 186 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGP--GSVCT 186 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccC--CCccc
Confidence 68888899885 99985 44443 345667777776678888888 999999999999999999876211 12221
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
+ |.+. ..+ +.+..+.++.+. .++||+ +.|||++..|+.+++.+|||+||+|
T Consensus 187 t-----------R~~~------------Gvg~pqltAv~~~a~aa~~~~v~VI--aDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 187 T-----------RTKT------------GVGYPQLSAVIECADAAHGLKGHII--SDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred C-----------ceeC------------CCCcCHHHHHHHHHHHhccCCCeEE--EcCCcCchhHHHHHHHcCCCEEEEC
Confidence 0 1221 122 345555555443 368998 7899999999999999999999999
Q ss_pred cccccCC
Q 021609 253 SGVFKSG 259 (310)
Q Consensus 253 sai~~a~ 259 (310)
+.+...+
T Consensus 242 ~llAG~~ 248 (343)
T TIGR01305 242 GMFAGHT 248 (343)
T ss_pred HhhhCcC
Confidence 8887744
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.4e-09 Score=91.72 Aligned_cols=156 Identities=13% Similarity=0.165 Sum_probs=113.7
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
+.++++.++|.+.+ +-++ . ....+.++++++.+. +.+.+.... ..++++.+.++||++++.+..
T Consensus 24 ~~~~al~~~Gi~~iEit~~-------t------~~a~~~i~~l~~~~~~~~vGAGTVl-~~~~a~~a~~aGA~FivsP~~ 89 (204)
T TIGR01182 24 PLAKALIEGGLRVLEVTLR-------T------PVALDAIRLLRKEVPDALIGAGTVL-NPEQLRQAVDAGAQFIVSPGL 89 (204)
T ss_pred HHHHHHHHcCCCEEEEeCC-------C------ccHHHHHHHHHHHCCCCEEEEEeCC-CHHHHHHHHHcCCCEEECCCC
Confidence 56888899999976 2221 0 111578888887763 334433332 458899999999999975543
Q ss_pred CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
..++.+..++ .+++++.++.|+.|+..+.++|+++|++++....+
T Consensus 90 --~~~v~~~~~~--~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~G------------------------------- 134 (204)
T TIGR01182 90 --TPELAKHAQD--HGIPIIPGVATPSEIMLALELGITALKLFPAEVSG------------------------------- 134 (204)
T ss_pred --CHHHHHHHHH--cCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcC-------------------------------
Confidence 4566666654 57899999999999999999999999998643111
Q ss_pred hccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 204 KKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 204 ~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
...+++.++. ..++|++ +.||| +++++.+++++|+.++.+||.|++.
T Consensus 135 -----G~~yikal~~plp~i~~~--ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~ 182 (204)
T TIGR01182 135 -----GVKMLKALAGPFPQVRFC--PTGGI-NLANVRDYLAAPNVACGGGSWLVPK 182 (204)
T ss_pred -----CHHHHHHHhccCCCCcEE--ecCCC-CHHHHHHHHhCCCEEEEEChhhcCc
Confidence 0123344433 2468898 89999 6999999999999999999999963
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-10 Score=100.61 Aligned_cols=128 Identities=23% Similarity=0.291 Sum_probs=85.7
Q ss_pred HHHHHHHHHcCCCEEEe---CCCCCch----hHHHHHHh-cCCCCcEEEecCC----------HHH----HHHHHHhCCC
Q 021609 104 FVEAQILEAIGIDYVDE---SEVLTPA----DEENHINK-HNFRIPFVCGCRN----------LGE----ALRRIREGAA 161 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~---~~~~~~~----~~~~~i~~-~~~~i~~~v~~~t----------~~e----a~~~~~~Gad 161 (310)
...++.+.+.||+.+.. ....+.. ++.+..+. +..+++++++... .++ ++.+.+.|+|
T Consensus 79 ~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD 158 (235)
T cd00958 79 VASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGAD 158 (235)
T ss_pred hcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCC
Confidence 34578889999998831 1122211 22222222 3467777776532 333 3336688999
Q ss_pred EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCC--CCHHH--
Q 021609 162 MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGV--ATPAD-- 237 (310)
Q Consensus 162 ~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI--~t~~d-- 237 (310)
||++... + +.+.++++.+..++||+ ++||+ .|+++
T Consensus 159 ~Ik~~~~---~------------------------------------~~~~~~~i~~~~~~pvv--~~GG~~~~~~~~~l 197 (235)
T cd00958 159 IVKTKYT---G------------------------------------DAESFKEVVEGCPVPVV--IAGGPKKDSEEEFL 197 (235)
T ss_pred EEEecCC---C------------------------------------CHHHHHHHHhcCCCCEE--EeCCCCCCCHHHHH
Confidence 9998521 1 23446666666779987 45776 55654
Q ss_pred --HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 238 --AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 238 --~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+.+++++|++|+.+|++|++++||...++++...+
T Consensus 198 ~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 198 KMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred HHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHHh
Confidence 88889999999999999999999999988887654
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-10 Score=101.47 Aligned_cols=132 Identities=24% Similarity=0.304 Sum_probs=90.6
Q ss_pred HHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 47 QARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.|+.+++ +++.| +|| |+++..+...|+.++++++.+.++ ++ .++||.+|.+.++.+
T Consensus 90 aa~~~~~-~~~~i-elN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~pVsvKir~g~~~-------------- 152 (233)
T cd02911 90 AAALVAK-NAAIL-EINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVPVSVKIRAGVDV-------------- 152 (233)
T ss_pred HHHHHhh-cCCEE-EEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCCEEEEEcCCcCc--------------
Confidence 4555555 45755 888 666555666688888888766655 44 589999999976310
Q ss_pred eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
.+.+-++.+.++|+|++.++.. +.+
T Consensus 153 ---------------------------~~~~la~~l~~aG~d~ihv~~~-~~g--------------------------- 177 (233)
T cd02911 153 ---------------------------DDEELARLIEKAGADIIHVDAM-DPG--------------------------- 177 (233)
T ss_pred ---------------------------CHHHHHHHHHHhCCCEEEECcC-CCC---------------------------
Confidence 0112244556778887644321 111
Q ss_pred HHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 021609 200 FTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~ 264 (310)
...+++.+++++ .++||+ ++|||.|++|+.+++..|||+|++|++ .+|+..
T Consensus 178 ------~~ad~~~I~~i~--~~ipVI--gnGgI~s~eda~~~l~~GaD~VmiGR~----~~p~~~ 228 (233)
T cd02911 178 ------NHADLKKIRDIS--TELFII--GNNSVTTIESAKEMFSYGADMVSVARA----SLPENI 228 (233)
T ss_pred ------CCCcHHHHHHhc--CCCEEE--EECCcCCHHHHHHHHHcCCCEEEEcCC----CCchHH
Confidence 123466777776 579998 889999999999999999999999999 378743
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.5e-10 Score=99.74 Aligned_cols=143 Identities=27% Similarity=0.465 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHH----HHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQ----LIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~----~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.++|+++| +|| |.+...+...|+.....++ .++++++.+++|+.+|.+.++..
T Consensus 71 ~aa~~~~~aG~d~i-eln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~------------- 136 (231)
T cd02801 71 EAAKIVEELGADGI-DLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDD------------- 136 (231)
T ss_pred HHHHHHHhcCCCEE-EEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCC-------------
Confidence 46778888999997 776 4433323333455555554 45556667778999998765310
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhH
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~ 198 (310)
..+.. +-+..+.+.|++++.++++.....
T Consensus 137 -------~~~~~-------------------~~~~~l~~~Gvd~i~v~~~~~~~~------------------------- 165 (231)
T cd02801 137 -------EEETL-------------------ELAKALEDAGASALTVHGRTREQR------------------------- 165 (231)
T ss_pred -------chHHH-------------------HHHHHHHHhCCCEEEECCCCHHHc-------------------------
Confidence 00111 123445567999999887531000
Q ss_pred HHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHH
Q 021609 199 VFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 199 ~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~a~dp~ 262 (310)
......++.++++++..++||+ ++|||.+++|+.+++.. |||+|++|++++. ||.
T Consensus 166 -----~~~~~~~~~~~~i~~~~~ipvi--~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~--~P~ 221 (231)
T cd02801 166 -----YSGPADWDYIAEIKEAVSIPVI--ANGDIFSLEDALRCLEQTGVDGVMIGRGALG--NPW 221 (231)
T ss_pred -----CCCCCCHHHHHHHHhCCCCeEE--EeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh--CCH
Confidence 0123457888889888899998 78999999999999987 8999999999997 776
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-10 Score=109.08 Aligned_cols=133 Identities=19% Similarity=0.196 Sum_probs=95.7
Q ss_pred HHHHHHHHHcCCCEEE--eCCCCCch--hHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVD--ESEVLTPA--DEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi--~~~~~~~~--~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.|. .++.-+.. +.++.+++..+++.+++ ++.|.++++.+.++|+|.|.+....+ .++.+
T Consensus 250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G--~~~~t- 326 (505)
T PLN02274 250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSG--SICTT- 326 (505)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCC--ccccC-
Confidence 5788999999999994 55554444 67778877556777765 69999999999999999998753222 11100
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+...... ......+..+.++.+..++||| +.|||+++.|+.+++.+||++|++|++|+..
T Consensus 327 ----------~~~~~~g--------~~~~~~i~~~~~~~~~~~vpVI--adGGI~~~~di~kAla~GA~~V~vGs~~~~t 386 (505)
T PLN02274 327 ----------QEVCAVG--------RGQATAVYKVASIAAQHGVPVI--ADGGISNSGHIVKALTLGASTVMMGSFLAGT 386 (505)
T ss_pred ----------ccccccC--------CCcccHHHHHHHHHHhcCCeEE--EeCCCCCHHHHHHHHHcCCCEEEEchhhccc
Confidence 0000000 0011234456666666789998 8999999999999999999999999999985
Q ss_pred C
Q 021609 259 G 259 (310)
Q Consensus 259 ~ 259 (310)
.
T Consensus 387 ~ 387 (505)
T PLN02274 387 T 387 (505)
T ss_pred c
Confidence 4
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.7e-09 Score=100.51 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=108.7
Q ss_pred HHHHHHHHhh-cCcceeeccccCc--HHHHHHHHHcCCCEEEeCCCCC---chhHHHHHHhcCCCCcEEEe---cCCHHH
Q 021609 81 PQLIKEIKQS-VTIPVMAKARIGH--FVEAQILEAIGIDYVDESEVLT---PADEENHINKHNFRIPFVCG---CRNLGE 151 (310)
Q Consensus 81 ~~~i~~i~~~-~~iPv~vk~~~~~--~~~a~~~~~aGad~Vi~~~~~~---~~~~~~~i~~~~~~i~~~v~---~~t~~e 151 (310)
++.++++++. .+.|+.+.+.+.+ ...++.+.++|+|.+..+.... .....+.+++ .++.++++ ++|..+
T Consensus 214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk--~GikvgVD~lnp~tp~e 291 (391)
T PRK13307 214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQK--TGIYSILDMLNVEDPVK 291 (391)
T ss_pred HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHH--cCCEEEEEEcCCCCHHH
Confidence 6889999887 5788888765532 1226778899999996433222 3344455544 45666664 556666
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAG 230 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~G 230 (310)
..+....++|+|.+|.....+ ...+.++.++++++. .++++. ..|
T Consensus 292 ~i~~l~~~vD~Vllht~vdp~--------------------------------~~~~~~~kI~~ikk~~~~~~I~--VdG 337 (391)
T PRK13307 292 LLESLKVKPDVVELHRGIDEE--------------------------------GTEHAWGNIKEIKKAGGKILVA--VAG 337 (391)
T ss_pred HHHHhhCCCCEEEEccccCCC--------------------------------cccchHHHHHHHHHhCCCCcEE--EEC
Confidence 666557899999887321100 012234455666653 467787 579
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
|| +++++.+++++|+|.+++||+|++++||...+++|.+.+
T Consensus 338 GI-~~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i 378 (391)
T PRK13307 338 GV-RVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL 378 (391)
T ss_pred Cc-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence 99 599999999999999999999999999999999988877
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-09 Score=94.08 Aligned_cols=188 Identities=13% Similarity=0.132 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC-cHHHHHHHHHcCCCEEEeC
Q 021609 46 EQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG-HFVEAQILEAIGIDYVDES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~ 121 (310)
+..+.++++|++++ +|+- ......-.+| ++.++.+++.+ ++|+-++.-.. ....++.+.++|+|.+...
T Consensus 23 ~~~~~l~~~~~~~~H~DimDg~fvpn~~~G-------~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH 95 (228)
T PTZ00170 23 DEAQDVLSGGADWLHVDVMDGHFVPNLSFG-------PPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTFH 95 (228)
T ss_pred HHHHHHHHcCCCEEEEecccCccCCCcCcC-------HHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEEe
Confidence 67888999999988 4431 1111011223 78999999887 89998887654 3456688999999999532
Q ss_pred -CCC-C-chhHHHHHHhcCCCCcEEEec---CCHHHHHHHHH-hCCCEE---EEcCCCCCcchHHHHHHHHhhccceEee
Q 021609 122 -EVL-T-PADEENHINKHNFRIPFVCGC---RNLGEALRRIR-EGAAMI---RTKGEAGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 122 -~~~-~-~~~~~~~i~~~~~~i~~~v~~---~t~~ea~~~~~-~Gad~V---~v~g~~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
... . +....+.+++. +..+++.. .+.++.....+ ...|+| .++. ++.+-.
T Consensus 96 ~ea~~~~~~~~l~~ik~~--G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~p-G~~gq~----------------- 155 (228)
T PTZ00170 96 IEATEDDPKAVARKIREA--GMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEP-GFGGQS----------------- 155 (228)
T ss_pred ccCCchHHHHHHHHHHHC--CCeEEEEECCCCCHHHHHHHHccchhhhHHhhhccc-CCCCcE-----------------
Confidence 221 1 34445555443 33343432 23344443332 224554 3331 111100
Q ss_pred cccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
......+.++++++.. +..+. ..||| +++++..+.++|+|.+++||+|++++||...++++.+
T Consensus 156 -------------~~~~~~~ki~~~~~~~~~~~I~--VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~ 219 (228)
T PTZ00170 156 -------------FMHDMMPKVRELRKRYPHLNIQ--VDGGI-NLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRE 219 (228)
T ss_pred -------------ecHHHHHHHHHHHHhcccCeEE--ECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence 0011234445555432 34454 58999 6999999999999999999999999999999999998
Q ss_pred HHhccC
Q 021609 271 AVTHYS 276 (310)
Q Consensus 271 ~i~~~~ 276 (310)
.++.++
T Consensus 220 ~~~~~~ 225 (228)
T PTZ00170 220 SVQKHL 225 (228)
T ss_pred HHHHHh
Confidence 887644
|
|
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-09 Score=103.48 Aligned_cols=191 Identities=22% Similarity=0.213 Sum_probs=117.7
Q ss_pred cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCc-c-eeec
Q 021609 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTI-P-VMAK 98 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~i-P-v~vk 98 (310)
...|++++|+++ +++...+++++++.++.++|.-+++.. ++.......+.|+++++.++- | +.++
T Consensus 12 ~~~lgiryPiiq---gpMa~GiSs~eLVaAVs~AGgLG~lga----------g~l~~e~l~~~I~~ir~~~~~~p~fGVN 78 (444)
T TIGR02814 12 REDYGVRYAYVA---GAMANGIASAELVIAMGRAGILGFFGA----------GGLPLEEVEQAIHRIQQALPGGPAYGVN 78 (444)
T ss_pred HHHhCCCCcEEC---ccccCCCCCHHHHHHHHhCCceeeeCC----------CCCCHHHHHHHHHHHHHhcCCCCceEEE
Confidence 356899999999 554447999999999999998876332 111111113466667776644 6 8888
Q ss_pred cccCc------HHHHHHHHHcCCCEEEeCCC--CCchhHHHHHHhcCC----------CCcEEEec--------------
Q 021609 99 ARIGH------FVEAQILEAIGIDYVDESEV--LTPADEENHINKHNF----------RIPFVCGC-------------- 146 (310)
Q Consensus 99 ~~~~~------~~~a~~~~~aGad~Vi~~~~--~~~~~~~~~i~~~~~----------~i~~~v~~-------------- 146 (310)
..... .+.++.+.+.|+..|..+.. .++... ..+..+. ...++..+
T Consensus 79 L~~~~~~~~~e~~~v~l~l~~~V~~veasa~~~~~p~~v--~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p 156 (444)
T TIGR02814 79 LIHSPSDPALEWGLVDLLLRHGVRIVEASAFMQLTPALV--RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAP 156 (444)
T ss_pred ecccCCCcccHHHHHHHHHHcCCCEEEeccccCCCcchh--hhhhccccccccccccccceEEEecCCHHHHHHhcCCCc
Confidence 65431 23457788899998864422 122111 1111111 01222222
Q ss_pred ------------CCHHHHHHHHHhC-CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHH
Q 021609 147 ------------RNLGEALRRIREG-AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLV 213 (310)
Q Consensus 147 ------------~t~~ea~~~~~~G-ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i 213 (310)
.|.+||..+.+.| +|.|.+. ...+||. +..+.+.++
T Consensus 157 ~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~EAGGHt------------------------------g~~~~~~Ll 205 (444)
T TIGR02814 157 AHILQKLLAEGRITREEAELARRVPVADDICVE-ADSGGHT------------------------------DNRPLVVLL 205 (444)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-ccCCCCC------------------------------CCCcHHHHH
Confidence 2556676677777 5888776 4333441 001122333
Q ss_pred HHHh---hcC--------CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 214 MQTK---QLG--------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 214 ~~i~---~~~--------~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
..+. +.. ++||+ |+|||.|++++..++.+|||+|++||.+.-+.
T Consensus 206 p~i~~lrd~v~~~~~y~~~VpVi--AAGGI~t~~~vaAAlaLGAdgV~~GT~flat~ 260 (444)
T TIGR02814 206 PAIIRLRDTLMRRYGYRKPIRVG--AAGGIGTPEAAAAAFMLGADFIVTGSVNQCTV 260 (444)
T ss_pred HHHHHHHHHHhhcccCCCCceEE--EeCCCCCHHHHHHHHHcCCcEEEeccHHHhCc
Confidence 3332 222 68888 88999999999999999999999999999754
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.7e-09 Score=90.95 Aligned_cols=173 Identities=23% Similarity=0.264 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-----CcceeeccccCcHHHHHHHHHcCCC
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-----TIPVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-----~iPv~vk~~~~~~~~a~~~~~aGad 116 (310)
+++++.++.+.++|++++ ++. ....+.+..+++..+++++.+ .++|++++.. .+..+.+.+.|+|
T Consensus 6 i~~~ed~~~a~~~Gvd~i-g~i-------~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~--~~i~~ia~~~~~d 75 (203)
T cd00405 6 ITTLEDALAAAEAGADAI-GFI-------FAPKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDL--EEILEIAEELGLD 75 (203)
T ss_pred CCCHHHHHHHHHcCCCEE-EEe-------cCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCH--HHHHHHHHhcCCC
Confidence 678899999999999987 652 112232333467777776544 3555555542 2445678889999
Q ss_pred EEEeCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHH--HHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecc
Q 021609 117 YVDESEVLTPADEENHINK-HNFRIPFVCGCRNLGEA--LRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea--~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
+|...... +.+..+.+++ .+..+...+.+.+..+. ..+...++||+.+........
T Consensus 76 ~Vqlhg~e-~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~-------------------- 134 (203)
T cd00405 76 VVQLHGDE-SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGG-------------------- 134 (203)
T ss_pred EEEECCCC-CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCC--------------------
Confidence 99544332 3334444443 23344423454444333 344557899986543211000
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccC
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKS 258 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a 258 (310)
. ..+...+++.++++. .++|++ +.||| |++++.++++.| ++||.|+|++..+
T Consensus 135 -G-------g~g~~~~~~~l~~~~--~~~Pvi--laGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 135 -G-------GTGKTFDWSLLRGLA--SRKPVI--LAGGL-TPDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred -C-------CCcceEChHHhhccc--cCCCEE--EECCC-ChHHHHHHHHhcCCCEEEcCCcccCC
Confidence 0 001123466666655 468998 56999 899999999998 9999999999986
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.4e-08 Score=88.06 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=117.9
Q ss_pred HHHHHHHHcCCcEE-Eec-cCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccC-cHHHHHHHHHcCCCEEEe-
Q 021609 46 EQARVAEEAGACAV-MAL-ERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIG-HFVEAQILEAIGIDYVDE- 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~- 120 (310)
+..+.++++|++++ +|+ +......-.++ ++.++.+++. +++|+-+.+-+. ....++.+.++|+|.+..
T Consensus 20 ~~i~~l~~~g~d~lHiDimDG~FVPN~tfg-------~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~H 92 (223)
T PRK08745 20 EEVDNVLKAGADWVHFDVMDNHYVPNLTIG-------PMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISFH 92 (223)
T ss_pred HHHHHHHHcCCCEEEEecccCccCCCcccC-------HHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEEc
Confidence 67888999999998 443 11111111233 7899999988 699988876553 455678899999999952
Q ss_pred CCC-CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEc--CCCCCcchHHHHHHHHhhccceEeecccChh
Q 021609 121 SEV-LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTK--GEAGTGNIIEAVRHVRSVMGDIRVLRNMDDD 197 (310)
Q Consensus 121 ~~~-~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~--g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d 197 (310)
... ..+....+.+++.+...-+...+.|.-+...-.-.-+|+|.+. .+++.|-- .
T Consensus 93 ~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~---------------f------- 150 (223)
T PRK08745 93 PEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQA---------------F------- 150 (223)
T ss_pred ccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCcc---------------c-------
Confidence 222 2355666777765544444444555544444333346665433 22332210 0
Q ss_pred HHHHhhhccCCcHHHHHHHhhc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 198 EVFTFAKKIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 198 ~~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
....++-++++++. .++.+- ..||| +.+++.++.++|||.+++||+|++++||...++.+++.+
T Consensus 151 --------i~~~l~KI~~l~~~~~~~~~~~~Ie--VDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 151 --------IPSALDKLRAIRKKIDALGKPIRLE--IDGGV-KADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAV 219 (223)
T ss_pred --------cHHHHHHHHHHHHHHHhcCCCeeEE--EECCC-CHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHH
Confidence 01112223333221 133344 57999 699999999999999999999999999998888887765
Q ss_pred h
Q 021609 273 T 273 (310)
Q Consensus 273 ~ 273 (310)
.
T Consensus 220 ~ 220 (223)
T PRK08745 220 A 220 (223)
T ss_pred H
Confidence 4
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=107.30 Aligned_cols=129 Identities=19% Similarity=0.277 Sum_probs=97.3
Q ss_pred HHHHHHHHcCCCEEE--eCCC--CCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHH
Q 021609 105 VEAQILEAIGIDYVD--ESEV--LTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVR 179 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi--~~~~--~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~ 179 (310)
+.++.+.++|+|.|. .++. ....+.++.+++..+++.+++ .+.|.++++.+.++|+|.|.+. .++|.+|++
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vg--ig~gsictt-- 305 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVG--VGPGAMCTT-- 305 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEEC--ccCCccccc--
Confidence 667888889999984 4443 345677788877667889888 6999999999999999999875 233454432
Q ss_pred HHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
+.+... ..+.+..+.++++ ..++||| |.|||+++.|+.+++.+||++|++|+.|.
T Consensus 306 ---------~~~~~~-----------~~p~~~av~~~~~~~~~~~~~vi--a~ggi~~~~~~~~al~~ga~~v~~g~~~a 363 (479)
T PRK07807 306 ---------RMMTGV-----------GRPQFSAVLECAAAARELGAHVW--ADGGVRHPRDVALALAAGASNVMIGSWFA 363 (479)
T ss_pred ---------ccccCC-----------chhHHHHHHHHHHHHHhcCCcEE--ecCCCCCHHHHHHHHHcCCCeeeccHhhc
Confidence 111111 1234666666655 3579998 89999999999999999999999999998
Q ss_pred cCC
Q 021609 257 KSG 259 (310)
Q Consensus 257 ~a~ 259 (310)
.++
T Consensus 364 g~~ 366 (479)
T PRK07807 364 GTY 366 (479)
T ss_pred cCc
Confidence 854
|
|
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-09 Score=88.06 Aligned_cols=171 Identities=26% Similarity=0.364 Sum_probs=107.6
Q ss_pred HHHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc-HHH----HHHHHHcCCC
Q 021609 45 PEQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH-FVE----AQILEAIGID 116 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~-~~~----a~~~~~aGad 116 (310)
.++++.+.+.|++.+ .+. ..+.... ....+.+..+++.++.|+.+...... .+. ++.+.++|+|
T Consensus 15 ~~~~~~~~~~G~~~v-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d 86 (200)
T cd04722 15 VELAKAAAEAGADAI-IVGTRSSDPEEAE-------TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGAD 86 (200)
T ss_pred HHHHHHHHcCCCCEE-EEeeEEECcccCC-------CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCC
Confidence 478889999999987 331 1111100 00013477777778999999876542 222 3578899999
Q ss_pred EEEeCCCCC-----chhHHHHHHhcCCCCcEEEecCCHHHHHH--HHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceE
Q 021609 117 YVDESEVLT-----PADEENHINKHNFRIPFVCGCRNLGEALR--RIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIR 189 (310)
Q Consensus 117 ~Vi~~~~~~-----~~~~~~~i~~~~~~i~~~v~~~t~~ea~~--~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~ 189 (310)
.|....... ..+..+.+++..+++++++.++...+... +.+.|++++.++++..++..
T Consensus 87 ~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~--------------- 151 (200)
T cd04722 87 GVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGG--------------- 151 (200)
T ss_pred EEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCC---------------
Confidence 996433322 33444455443236777777765544444 46889999998765432210
Q ss_pred eecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 190 VLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
.. ........+..++...++|++ ++|||.+++++.+++++|||++++||
T Consensus 152 ----~~---------~~~~~~~~~~~~~~~~~~pi~--~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 152 ----RD---------AVPIADLLLILAKRGSKVPVI--AGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred ----cc---------CchhHHHHHHHHHhcCCCCEE--EECCCCCHHHHHHHHHhCCCEEEecC
Confidence 00 000012344455555789998 68999999999999999999999997
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-10 Score=107.17 Aligned_cols=66 Identities=23% Similarity=0.366 Sum_probs=54.2
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPE 279 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~ 279 (310)
+++++++++.. ++||+ ++|||.|++|+.+++.+|||+|++||+++. ++|. ..+++.+.+++|++++
T Consensus 276 l~~v~~l~~~~~~~ipIi--g~GGI~s~eda~e~l~aGAd~V~v~~~~~~-~gP~-~~~~i~~~L~~~l~~~ 343 (344)
T PRK05286 276 TEVIRRLYKELGGRLPII--GVGGIDSAEDAYEKIRAGASLVQIYSGLIY-EGPG-LVKEIVRGLARLLRRD 343 (344)
T ss_pred HHHHHHHHHHhCCCCCEE--EECCCCCHHHHHHHHHcCCCHHHHHHHHHH-hCch-HHHHHHHHHHHHHHhc
Confidence 56777787766 79998 789999999999999999999999999985 3576 4455888888877643
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-08 Score=88.70 Aligned_cols=154 Identities=16% Similarity=0.236 Sum_probs=109.1
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhc--Ccc---eeeccccCcHHHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIP---VMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iP---v~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+.++++.++|...+ +-++ . ....+.++++++.. ..| +.+... -..++++.+.++||++++
T Consensus 31 ~~~~al~~gGi~~iEiT~~-------t------p~a~~~i~~l~~~~~~~~p~~~vGaGTV-l~~e~a~~a~~aGA~FiV 96 (222)
T PRK07114 31 KVIKACYDGGARVFEFTNR-------G------DFAHEVFAELVKYAAKELPGMILGVGSI-VDAATAALYIQLGANFIV 96 (222)
T ss_pred HHHHHHHHCCCCEEEEeCC-------C------CcHHHHHHHHHHHHHhhCCCeEEeeEeC-cCHHHHHHHHHcCCCEEE
Confidence 56888899999876 2221 0 11156677665432 223 333332 245889999999999997
Q ss_pred eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
.+. -..++.+..++ .+++++.++.|+.|+..+.++|+++|++++....|
T Consensus 97 sP~--~~~~v~~~~~~--~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G--------------------------- 145 (222)
T PRK07114 97 TPL--FNPDIAKVCNR--RKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYG--------------------------- 145 (222)
T ss_pred CCC--CCHHHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccC---------------------------
Confidence 554 24556666543 68999999999999999999999999998642111
Q ss_pred HHhhhccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCH--HHHHHHHHcCCCEEEEcccccc
Q 021609 200 FTFAKKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATP--ADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~--~d~~~~l~~GadgV~VGsai~~ 257 (310)
...++.++. +.++|++ +.|||+ + +++.+++++|+.+|.+||.++.
T Consensus 146 ----------~~~ikal~~p~p~i~~~--ptGGV~-~~~~n~~~yl~aGa~avg~Gs~L~~ 193 (222)
T PRK07114 146 ----------PGFVKAIKGPMPWTKIM--PTGGVE-PTEENLKKWFGAGVTCVGMGSKLIP 193 (222)
T ss_pred ----------HHHHHHHhccCCCCeEE--eCCCCC-cchhcHHHHHhCCCEEEEEChhhcC
Confidence 223444443 2467888 899995 5 8999999999999999999985
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=100.46 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=43.7
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCC-HH
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD-PV 262 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~d-p~ 262 (310)
+++++++++.. ++||+ +.|||.+++|+.+++.+|||+|++||+++. | |.
T Consensus 230 ~~~v~~i~~~~~~~ipii--a~GGI~~~~da~~~l~~GAd~V~vg~a~~~--~GP~ 281 (289)
T cd02810 230 LRWVARLAARLQLDIPII--GVGGIDSGEDVLEMLMAGASAVQVATALMW--DGPD 281 (289)
T ss_pred HHHHHHHHHhcCCCCCEE--EECCCCCHHHHHHHHHcCccHheEcHHHHh--cCcc
Confidence 56778887776 89998 789999999999999999999999999997 5 65
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=89.27 Aligned_cols=156 Identities=19% Similarity=0.288 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++++.++|...+ ++- .+. ....+.++++++.+ ++-+.+... -..++++.+.++||++++.+.
T Consensus 24 ~~~~al~~gGi~~i-EiT-----~~t------~~a~~~I~~l~~~~p~~~vGAGTV-~~~e~a~~a~~aGA~FivSP~-- 88 (196)
T PF01081_consen 24 PIAEALIEGGIRAI-EIT-----LRT------PNALEAIEALRKEFPDLLVGAGTV-LTAEQAEAAIAAGAQFIVSPG-- 88 (196)
T ss_dssp HHHHHHHHTT--EE-EEE-----TTS------TTHHHHHHHHHHHHTTSEEEEES---SHHHHHHHHHHT-SEEEESS--
T ss_pred HHHHHHHHCCCCEE-EEe-----cCC------ccHHHHHHHHHHHCCCCeeEEEec-cCHHHHHHHHHcCCCEEECCC--
Confidence 67889999998876 431 010 01157888887765 333333332 245889999999999998664
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
-.+++.+..++ .+++++.++.|+.|+..+.++|+++|++++...-|
T Consensus 89 ~~~~v~~~~~~--~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~G-------------------------------- 134 (196)
T PF01081_consen 89 FDPEVIEYARE--YGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALG-------------------------------- 134 (196)
T ss_dssp --HHHHHHHHH--HTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTT--------------------------------
T ss_pred CCHHHHHHHHH--cCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcC--------------------------------
Confidence 24566666654 57899999999999999999999999998653211
Q ss_pred ccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 205 KIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 205 ~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
....++.++. ..++|++ +.||| +++++.+++++|+.++.+||.+++
T Consensus 135 ----G~~~ik~l~~p~p~~~~~--ptGGV-~~~N~~~~l~ag~~~vg~Gs~L~~ 181 (196)
T PF01081_consen 135 ----GPSYIKALRGPFPDLPFM--PTGGV-NPDNLAEYLKAGAVAVGGGSWLFP 181 (196)
T ss_dssp ----HHHHHHHHHTTTTT-EEE--EBSS---TTTHHHHHTSTTBSEEEESGGGS
T ss_pred ----cHHHHHHHhccCCCCeEE--EcCCC-CHHHHHHHHhCCCEEEEECchhcC
Confidence 1224455544 2467887 78999 689999999999999999999996
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.6e-10 Score=103.99 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=65.5
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCG 287 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~ 287 (310)
+.++.++.+.. ++||+ +.|||.|.+|+.+++.+||+.|+++|+++. .+|. ...++.+.+++|++.+++.++++.
T Consensus 228 l~~v~~~~~~~~~~ipIi--g~GGI~s~~da~e~i~aGA~~Vqv~ta~~~-~gp~-~~~~i~~~L~~~l~~~g~~si~e~ 303 (310)
T PRK02506 228 LANVRAFYQRLNPSIQII--GTGGVKTGRDAFEHILCGASMVQVGTALHK-EGPA-VFERLTKELKAIMAEKGYQSLEDF 303 (310)
T ss_pred HHHHHHHHHhcCCCCCEE--EECCCCCHHHHHHHHHcCCCHHhhhHHHHH-hChH-HHHHHHHHHHHHHHHhCCCCHHHH
Confidence 44566665554 69998 789999999999999999999999999997 3564 556699999999999999999999
Q ss_pred ccc
Q 021609 288 LGE 290 (310)
Q Consensus 288 ~~~ 290 (310)
.|.
T Consensus 304 ~G~ 306 (310)
T PRK02506 304 RGK 306 (310)
T ss_pred hCh
Confidence 993
|
|
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-08 Score=86.84 Aligned_cols=190 Identities=24% Similarity=0.385 Sum_probs=127.7
Q ss_pred HHHHHHHHcCCcEEEecc----CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEE-E
Q 021609 46 EQARVAEEAGACAVMALE----RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYV-D 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~----~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~V-i 119 (310)
..|.+++++|+|+++.-| |-+++++..- ++-| ...++++++.+.+|+.++.--+ ...-+.++...|+++| +
T Consensus 38 ~dA~~leegG~DavivEN~gD~Pf~k~v~~~t-vaaM--a~iv~~v~r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRV 114 (263)
T COG0434 38 RDAAALEEGGVDAVIVENYGDAPFLKDVGPET-VAAM--AVIVREVVREVSIPVGVNVLRNDAVAALAIAYAVGADFIRV 114 (263)
T ss_pred HHHHHHHhCCCcEEEEeccCCCCCCCCCChHH-HHHH--HHHHHHHHHhccccceeeeeccccHHHHHHHHhcCCCEEEE
Confidence 468899999999985545 4444332211 1111 3466777888899999986544 3455678889999999 2
Q ss_pred e--C-----C-C-CC--chhHHHHHHhcCCCCcEEEecC----------CHHHHHH--HHHhCCCEEEEcCCCCCcchHH
Q 021609 120 E--S-----E-V-LT--PADEENHINKHNFRIPFVCGCR----------NLGEALR--RIREGAAMIRTKGEAGTGNIIE 176 (310)
Q Consensus 120 ~--~-----~-~-~~--~~~~~~~i~~~~~~i~~~v~~~----------t~~ea~~--~~~~Gad~V~v~g~~~~~~~~~ 176 (310)
. + + . ++ ..++.++....+.++.++++++ +.+++.+ ....++|.|.+.|+. ||
T Consensus 115 N~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~-TG---- 189 (263)
T COG0434 115 NVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSR-TG---- 189 (263)
T ss_pred EeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEeccc-CC----
Confidence 1 1 1 1 12 2355555544455677887765 4555544 234577888887763 12
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
..++.+.++.+++..+.||+ ++.|+ +++++..+++. |||++|||.|-
T Consensus 190 -----------------------------~~~d~~el~~a~~~~~~pvl--vGSGv-~~eN~~~~l~~-adG~IvgT~lK 236 (263)
T COG0434 190 -----------------------------SPPDLEELKLAKEAVDTPVL--VGSGV-NPENIEELLKI-ADGVIVGTSLK 236 (263)
T ss_pred -----------------------------CCCCHHHHHHHHhccCCCEE--EecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence 24457778888888889998 68999 79999999998 99999999998
Q ss_pred cCC---CH--HHHHHHHHHHHhccC
Q 021609 257 KSG---DP--VKRAQAIVRAVTHYS 276 (310)
Q Consensus 257 ~a~---dp--~~~a~~l~~~i~~~~ 276 (310)
+.. || ...+++|++..++..
T Consensus 237 ~~G~~~n~VD~~Rv~~~v~~a~~~~ 261 (263)
T COG0434 237 KGGVTWNPVDLERVRRFVEAARRLR 261 (263)
T ss_pred cCCEecCccCHHHHHHHHHHHHHhc
Confidence 865 22 245566777766543
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-08 Score=88.63 Aligned_cols=188 Identities=24% Similarity=0.381 Sum_probs=120.2
Q ss_pred HHHHHHHHcCCcEEEecc--CCccccccc-CCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-e
Q 021609 46 EQARVAEEAGACAVMALE--RVPADIRSQ-GGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-E 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~--~~~~~~~~~-~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~ 120 (310)
+.|+.++++|+|+++.-| ..|-..+.. ...+.| ...+.++++.+++|+.++.-.+ .......+.++|+|+|- .
T Consensus 33 ~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM--~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~ 110 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAM--ARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGADFIRVN 110 (254)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHH--HHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEEEec
Confidence 568999999999984444 222111100 000001 2355567788899999986543 34556788889999993 1
Q ss_pred -------CC-C-CC--chhHHHHHHhcCCCCcEEEecC----------CHHHHHH-H-HHhCCCEEEEcCCCCCcchHHH
Q 021609 121 -------SE-V-LT--PADEENHINKHNFRIPFVCGCR----------NLGEALR-R-IREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 121 -------~~-~-~~--~~~~~~~i~~~~~~i~~~v~~~----------t~~ea~~-~-~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
++ . .+ ..++.++-+..+.++.++.+++ +.++..+ + ...++|.|.+.|.. ||
T Consensus 111 ~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~-TG----- 184 (254)
T PF03437_consen 111 VFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKA-TG----- 184 (254)
T ss_pred CEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcc-cC-----
Confidence 11 1 11 2344444333344566777665 3444433 3 35688988887642 11
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
..++.+.++++++..++||+ .++|+ |++++.+.+.. |||++|||.|-+
T Consensus 185 ----------------------------~~~~~~~l~~vr~~~~~PVl--vGSGv-t~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 185 ----------------------------EPPDPEKLKRVREAVPVPVL--VGSGV-TPENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred ----------------------------CCCCHHHHHHHHhcCCCCEE--EecCC-CHHHHHHHHHh-CCEEEEeeeeee
Confidence 24457778888888779998 58999 79999999977 999999999987
Q ss_pred CCC---H--HHHHHHHHHHHh
Q 021609 258 SGD---P--VKRAQAIVRAVT 273 (310)
Q Consensus 258 a~d---p--~~~a~~l~~~i~ 273 (310)
.++ | ...+++|.+.++
T Consensus 233 ~G~~~n~VD~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 233 DGKWENPVDPERVRRFMEAVK 253 (254)
T ss_pred CCEeCCcCCHHHHHHHHHHhh
Confidence 542 3 246666777665
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.4e-08 Score=86.66 Aligned_cols=155 Identities=15% Similarity=0.158 Sum_probs=109.4
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
+.++++.++|.+.+ +-++ ... -.+.++++++.+. +-+.+.... ..++++.+.++||++++.+.
T Consensus 31 ~i~~al~~~Gi~~iEitl~------~~~-------~~~~I~~l~~~~p~~~IGAGTVl-~~~~a~~a~~aGA~FivsP~- 95 (212)
T PRK05718 31 PLAKALVAGGLPVLEVTLR------TPA-------ALEAIRLIAKEVPEALIGAGTVL-NPEQLAQAIEAGAQFIVSPG- 95 (212)
T ss_pred HHHHHHHHcCCCEEEEecC------Ccc-------HHHHHHHHHHHCCCCEEEEeecc-CHHHHHHHHHcCCCEEECCC-
Confidence 46888889999976 2231 111 1678888887663 334434333 34789999999999997554
Q ss_pred CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+.+ ++.+...+ .+++++.++.|+.|+..+.++|+++|++++....
T Consensus 96 ~~~-~vi~~a~~--~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~~-------------------------------- 140 (212)
T PRK05718 96 LTP-PLLKAAQE--GPIPLIPGVSTPSELMLGMELGLRTFKFFPAEAS-------------------------------- 140 (212)
T ss_pred CCH-HHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEEccchhc--------------------------------
Confidence 233 66666544 6788999999999999999999999999753210
Q ss_pred hccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 204 KKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 204 ~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+ ....++.++. ..++|++ +.||| +++++.+++++|+..++.||.+++
T Consensus 141 ---g-g~~~lk~l~~p~p~~~~~--ptGGV-~~~ni~~~l~ag~v~~vggs~L~~ 188 (212)
T PRK05718 141 ---G-GVKMLKALAGPFPDVRFC--PTGGI-SPANYRDYLALPNVLCIGGSWMVP 188 (212)
T ss_pred ---c-CHHHHHHHhccCCCCeEE--EeCCC-CHHHHHHHHhCCCEEEEEChHhCC
Confidence 0 1233444443 2458888 78999 699999999999777777888875
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-07 Score=83.23 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=111.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++++.++|...+ ++- ... ...++.++++++.+. +-+.+... -..++++.+.++|+++++.+.
T Consensus 20 ~ia~al~~gGi~~i-Eit-------~~t----p~a~~~I~~l~~~~~~~~vGAGTV-l~~e~a~~ai~aGA~FivSP~-- 84 (201)
T PRK06015 20 PLARALAAGGLPAI-EIT-------LRT----PAALDAIRAVAAEVEEAIVGAGTI-LNAKQFEDAAKAGSRFIVSPG-- 84 (201)
T ss_pred HHHHHHHHCCCCEE-EEe-------CCC----ccHHHHHHHHHHHCCCCEEeeEeC-cCHHHHHHHHHcCCCEEECCC--
Confidence 57888899999976 431 000 111678888887663 22332222 245889999999999997554
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
-..++.+..++ .+++++.++.|+.|+..+.++|+++|++++...-+
T Consensus 85 ~~~~vi~~a~~--~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~G-------------------------------- 130 (201)
T PRK06015 85 TTQELLAAAND--SDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAG-------------------------------- 130 (201)
T ss_pred CCHHHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhC--------------------------------
Confidence 24556666543 68999999999999999999999999998642110
Q ss_pred ccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 205 KIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 205 ~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
...+++.++. ..++|++ +.||| +++++.+++++|+..++.||.++.
T Consensus 131 ----G~~yikal~~plp~~~l~--ptGGV-~~~n~~~~l~ag~~~~~ggs~l~~ 177 (201)
T PRK06015 131 ----GAAFLKALSSPLAGTFFC--PTGGI-SLKNARDYLSLPNVVCVGGSWVAP 177 (201)
T ss_pred ----CHHHHHHHHhhCCCCcEE--ecCCC-CHHHHHHHHhCCCeEEEEchhhCC
Confidence 0123444443 2468898 89999 699999999999888888999985
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=97.38 Aligned_cols=62 Identities=23% Similarity=0.265 Sum_probs=49.4
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
+..++++++.. ++||+ ++|||.|.+|+.+++.+|||+|+++|+++. .+|+. .+++.+.+++|
T Consensus 230 l~~v~~~~~~~~~~ipIi--g~GGI~s~~da~e~l~aGA~~Vqv~ta~~~-~gp~~-~~~i~~~L~~~ 293 (294)
T cd04741 230 LGNVRTFRRLLPSEIQII--GVGGVLDGRGAFRMRLAGASAVQVGTALGK-EGPKV-FARIEKELEDI 293 (294)
T ss_pred HHHHHHHHHhcCCCCCEE--EeCCCCCHHHHHHHHHcCCCceeEchhhhh-cCchH-HHHHHHHHHhh
Confidence 45667776665 59998 889999999999999999999999999995 36763 34466666654
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.2e-09 Score=102.47 Aligned_cols=133 Identities=20% Similarity=0.273 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCEEE--eCCC--CCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVD--ESEV--LTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi--~~~~--~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.+. .++. ....+.++.++...++++++++ +.|.+.++.+.++|+|+|.+.+..++ +|++
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs--~~tt- 303 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGA--MCTT- 303 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCc--cccC-
Confidence 4778899999999995 4443 2344566677665568999999 99999999999999999998765432 2211
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+.+...... ...+..+..+..++ .++||| |+|||+++.|+.+++.+||++|++|+.|...
T Consensus 304 ----------r~~~~~g~~-------~~~a~~~~~~~~~~-~~~~vi--adGgi~~~~di~kala~GA~~vm~g~~~ag~ 363 (475)
T TIGR01303 304 ----------RMMTGVGRP-------QFSAVLECAAEARK-LGGHVW--ADGGVRHPRDVALALAAGASNVMVGSWFAGT 363 (475)
T ss_pred ----------ccccCCCCc-------hHHHHHHHHHHHHH-cCCcEE--EeCCCCCHHHHHHHHHcCCCEEeechhhccc
Confidence 111111110 01222344443444 379998 8999999999999999999999999999875
Q ss_pred C
Q 021609 259 G 259 (310)
Q Consensus 259 ~ 259 (310)
+
T Consensus 364 ~ 364 (475)
T TIGR01303 364 Y 364 (475)
T ss_pred c
Confidence 3
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.3e-08 Score=100.01 Aligned_cols=129 Identities=21% Similarity=0.278 Sum_probs=91.0
Q ss_pred HHHHHHHHHcCCCEEE--eCCC--CCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHH
Q 021609 104 FVEAQILEAIGIDYVD--ESEV--LTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEA 177 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi--~~~~--~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~ 177 (310)
.+.++.+.++|+|.+. .++. ....+.++.++++.+++++++ .+.|.++++.+.++|+|+|.+. |++++ +.+
T Consensus 226 ~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~---~~t 302 (450)
T TIGR01302 226 KERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSI---CTT 302 (450)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcC---Ccc
Confidence 4778899999999995 3322 334455666666556788777 6899999999999999999875 23221 100
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh---hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK---QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~---~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
+.+... ..+.+..+.++. +..++||+ |.|||+++.|+.+++.+||++|++|+.
T Consensus 303 -----------~~~~~~-----------g~p~~~~i~~~~~~~~~~~vpvi--adGGi~~~~di~kAla~GA~~V~~G~~ 358 (450)
T TIGR01302 303 -----------RIVAGV-----------GVPQITAVYDVAEYAAQSGIPVI--ADGGIRYSGDIVKALAAGADAVMLGSL 358 (450)
T ss_pred -----------ceecCC-----------CccHHHHHHHHHHHHhhcCCeEE--EeCCCCCHHHHHHHHHcCCCEEEECch
Confidence 111110 112234444443 23578998 899999999999999999999999999
Q ss_pred cccCC
Q 021609 255 VFKSG 259 (310)
Q Consensus 255 i~~a~ 259 (310)
|...+
T Consensus 359 ~a~~~ 363 (450)
T TIGR01302 359 LAGTT 363 (450)
T ss_pred hhcCC
Confidence 99854
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.2e-09 Score=101.05 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=65.9
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCG 287 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~ 287 (310)
.+.+.++.+.. ++||+ +.|||.|.+|+.+.+.+||+.|+++|+++. ..| ...+++.+.+.++++.+++.++++.
T Consensus 328 l~~v~~l~~~~~~~ipII--gvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~-~Gp-~~i~~I~~eL~~~l~~~G~~si~e~ 403 (409)
T PLN02826 328 TEVLREMYRLTRGKIPLV--GCGGVSSGEDAYKKIRAGASLVQLYTAFAY-EGP-ALIPRIKAELAACLERDGFKSIQEA 403 (409)
T ss_pred HHHHHHHHHHhCCCCcEE--EECCCCCHHHHHHHHHhCCCeeeecHHHHh-cCH-HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 45666666554 68998 789999999999999999999999999987 346 4667799999999999999999999
Q ss_pred cccc
Q 021609 288 LGEA 291 (310)
Q Consensus 288 ~~~~ 291 (310)
.|.+
T Consensus 404 iG~~ 407 (409)
T PLN02826 404 VGAD 407 (409)
T ss_pred hCcC
Confidence 8854
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.2e-08 Score=90.49 Aligned_cols=191 Identities=16% Similarity=0.166 Sum_probs=120.3
Q ss_pred cceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHH-HHHHHhh--cCcceeecc
Q 021609 23 PFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQL-IKEIKQS--VTIPVMAKA 99 (310)
Q Consensus 23 ~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~-i~~i~~~--~~iPv~vk~ 99 (310)
.+....|++- --|....+.++|+.+.+.|.-.+ .+ + + +++. ...+++. ..+++.+..
T Consensus 30 ~~~l~~P~~i----nAM~t~in~~LA~~a~~~G~~~i-~h-------K-~-------~~E~~~sfvrk~k~~~L~v~~Sv 89 (321)
T TIGR01306 30 KHKFKLPVVP----ANMQTIIDEKLAEQLAENGYFYI-MH-------R-F-------DEESRIPFIKDMQERGLFASISV 89 (321)
T ss_pred CcEecCcEEe----eccchhhhHHHHHHHHHcCCEEE-Ee-------c-C-------CHHHHHHHHHhccccccEEEEEc
Confidence 4455566665 11233556689999999886654 22 1 1 1222 2223322 134444333
Q ss_pred ccC--cHHHHHHHHHcC--CCEEE--eCCCC--CchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEc-CCC
Q 021609 100 RIG--HFVEAQILEAIG--IDYVD--ESEVL--TPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTK-GEA 169 (310)
Q Consensus 100 ~~~--~~~~a~~~~~aG--ad~Vi--~~~~~--~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~-g~~ 169 (310)
... ..+.+..+.++| +|.|. .++.- ...+..+.+++..+...++.+ +.|.+.++.+.++|+|.|.++ |++
T Consensus 90 G~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G 169 (321)
T TIGR01306 90 GVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPG 169 (321)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCC
Confidence 332 246778888999 79884 44432 244556666664455657776 889999999999999999987 332
Q ss_pred CCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 170 GTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
.+ +.+ ++.... ... +.+..+.++++..++||+ +.|||++..|+.+++.+|||+
T Consensus 170 ~~---~~t-----------r~~~g~----------g~~~~~l~ai~ev~~a~~~pVI--adGGIr~~~Di~KALa~GAd~ 223 (321)
T TIGR01306 170 KV---CIT-----------KIKTGF----------GTGGWQLAALRWCAKAARKPII--ADGGIRTHGDIAKSIRFGASM 223 (321)
T ss_pred cc---ccc-----------eeeecc----------CCCchHHHHHHHHHHhcCCeEE--EECCcCcHHHHHHHHHcCCCE
Confidence 21 100 111110 111 123456667776789998 889999999999999999999
Q ss_pred EEEccccccCC
Q 021609 249 VFVGSGVFKSG 259 (310)
Q Consensus 249 V~VGsai~~a~ 259 (310)
|++|+.|...+
T Consensus 224 Vmig~~~ag~~ 234 (321)
T TIGR01306 224 VMIGSLFAGHE 234 (321)
T ss_pred EeechhhcCcc
Confidence 99999998754
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.3e-09 Score=98.05 Aligned_cols=114 Identities=20% Similarity=0.193 Sum_probs=79.3
Q ss_pred cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC--CCC
Q 021609 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLP 223 (310)
Q Consensus 146 ~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iP 223 (310)
+.+.++++++.++|+|.|.+.++++.. +. ...++++.+.++++.. ++|
T Consensus 236 v~~~eda~~a~~~Gvd~I~VS~HGGrq------------------~~------------~~~a~~~~L~ei~~av~~~i~ 285 (367)
T TIGR02708 236 PQCPEDADRALKAGASGIWVTNHGGRQ------------------LD------------GGPAAFDSLQEVAEAVDKRVP 285 (367)
T ss_pred CCCHHHHHHHHHcCcCEEEECCcCccC------------------CC------------CCCcHHHHHHHHHHHhCCCCc
Confidence 556678888888888877666654311 00 1234467777776654 599
Q ss_pred EEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccch
Q 021609 224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 224 Vi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
|+ ++|||++..|+.+++.+|||+|++|+.++.. .+..=.+.+ .+.+..+.+++...|-.+|.++++
T Consensus 286 vi--~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~-----la~~G~~gv-----~~~l~~l~~El~~~M~l~G~~~i~ 351 (367)
T TIGR02708 286 IV--FDSGVRRGQHVFKALASGADLVALGRPVIYG-----LALGGSQGA-----RQVFEYLNKELKRVMQLTGTQTIE 351 (367)
T ss_pred EE--eeCCcCCHHHHHHHHHcCCCEEEEcHHHHHH-----HHhcCHHHH-----HHHHHHHHHHHHHHHHHhCCCCHH
Confidence 98 7999999999999999999999999988751 111001111 233556778888888888888765
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-07 Score=85.67 Aligned_cols=69 Identities=32% Similarity=0.386 Sum_probs=56.0
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCC--CHHHHHHH----HHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhh
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVA--TPADAAMM----MQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVL 281 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~--t~~d~~~~----l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~ 281 (310)
+.++++.+..++||+ ++|||+ |.+++.+. +++||+|+.+|++|++++||...++.|...+++....+..
T Consensus 186 ~~l~~~~~~~~ipV~--a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~~~~~~ea 260 (267)
T PRK07226 186 ESFREVVEGCPVPVV--IAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHEGASVEEA 260 (267)
T ss_pred HHHHHHHHhCCCCEE--EEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhCCCCHHHH
Confidence 345555554579998 679998 76666555 4999999999999999999999999999999988875543
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=92.16 Aligned_cols=68 Identities=31% Similarity=0.412 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCC--C----HHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChh
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVA--T----PADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPE 279 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~--t----~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~ 279 (310)
.+.++++.+..++||+ +.|||+ | .+++.+++++|++|+.+|++|++++||...+++|...+++....+
T Consensus 181 ~~~l~~~~~~~~iPVv--a~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~~~i~~~~~~~ 254 (258)
T TIGR01949 181 IDSFRDVVKGCPAPVV--VAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVCKIVHENADVE 254 (258)
T ss_pred HHHHHHHHHhCCCcEE--EecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHHHHHhCCCCHH
Confidence 4456666665679998 569998 4 666777779999999999999999999999999999998887654
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-07 Score=80.05 Aligned_cols=183 Identities=16% Similarity=0.233 Sum_probs=115.8
Q ss_pred HHHHHHHHcCCcEEEecc-----CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAVMALE-----RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-----~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi 119 (310)
+.+++++++|++++ .++ -+|+ -.+| +..++.+++.+..|+-+.+-+. .+..++.+.++|||.+.
T Consensus 20 ~el~~~~~agad~i-H~DVMDghFVPN--iTfG-------p~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It 89 (220)
T COG0036 20 EELKALEAAGADLI-HIDVMDGHFVPN--ITFG-------PPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIIT 89 (220)
T ss_pred HHHHHHHHcCCCEE-EEeccCCCcCCC--cccC-------HHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEE
Confidence 78899999999998 443 1222 1234 7899999998899998876554 35567899999999995
Q ss_pred -eCC-CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEc--CCCCCcchHHHHHHHHhhccceEeecccC
Q 021609 120 -ESE-VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTK--GEAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 120 -~~~-~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~--g~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
... ........+.+++.+...-+.....|+-+...-.-.-+|+|.+. +++++|- ..+
T Consensus 90 ~H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ---------------~Fi---- 150 (220)
T COG0036 90 FHAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQ---------------KFI---- 150 (220)
T ss_pred EEeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCccc---------------ccC----
Confidence 333 33466777777765444444445667777766554557765433 2333331 000
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcCC--CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLGR--LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~~--iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
...++-++++++... -++.+-..||| +.+++.++.++|||.+++||++++.+|-....+.+.
T Consensus 151 -----------~~~l~Ki~~lr~~~~~~~~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~ 214 (220)
T COG0036 151 -----------PEVLEKIRELRAMIDERLDILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADDYKATIRELR 214 (220)
T ss_pred -----------HHHHHHHHHHHHHhcccCCeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHH
Confidence 111222333332211 03322258999 699999999999999999999999777333434343
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.4e-08 Score=91.25 Aligned_cols=120 Identities=17% Similarity=0.289 Sum_probs=80.7
Q ss_pred CCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
++++++ ++.+.++++++.+.|+|.|.+.+++++.. . ...++.+.+.++.
T Consensus 213 ~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~~------------------d------------~~~~~~~~L~~i~ 262 (344)
T cd02922 213 KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQL------------------D------------TAPAPIEVLLEIR 262 (344)
T ss_pred CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCcccC------------------C------------CCCCHHHHHHHHH
Confidence 455444 58899999999999999999888654320 0 0122333344443
Q ss_pred hc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH-HHHHHHHHHhccCChhhhhhhhhhcccc
Q 021609 218 QL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK-RAQAIVRAVTHYSDPEVLAEVSCGLGEA 291 (310)
Q Consensus 218 ~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~-~a~~l~~~i~~~~~~~~~~~~~~~~~~~ 291 (310)
+. .++||+ ++|||++..|+.+++.+||++|.+|++++.+ +.. -.+.+ .+-+..+..++...
T Consensus 263 ~~~~~~~~~~~vi--~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~--l~~~G~~gv---------~~~l~~l~~EL~~~ 329 (344)
T cd02922 263 KHCPEVFDKIEVY--VDGGVRRGTDVLKALCLGAKAVGLGRPFLYA--LSAYGEEGV---------EKAIQILKDEIETT 329 (344)
T ss_pred HHHHHhCCCceEE--EeCCCCCHHHHHHHHHcCCCEEEECHHHHHH--HhhccHHHH---------HHHHHHHHHHHHHH
Confidence 31 258998 7899999999999999999999999999962 211 00111 12344566677777
Q ss_pred hhcccCccch
Q 021609 292 MVGLNLSDHK 301 (310)
Q Consensus 292 ~~~~~~~~~~ 301 (310)
|-.+|.++++
T Consensus 330 m~l~G~~~i~ 339 (344)
T cd02922 330 MRLLGVTSLD 339 (344)
T ss_pred HHHhCCCCHH
Confidence 7777766543
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.8e-07 Score=82.49 Aligned_cols=181 Identities=15% Similarity=0.156 Sum_probs=112.4
Q ss_pred HHHHHHHHcCCcEE-Eec-cC--CcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAV-MAL-ER--VPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~--~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~ 120 (310)
+.+++++++|++++ +|+ +. .|. -.++ ++.++.+++.++.|+-+.+-.. ....++.+.++|+|.+..
T Consensus 17 ~el~~l~~~g~d~lHiDvMDG~FVPN--~tfG-------~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~ 87 (210)
T PRK08005 17 EALTALHDAPLGSLHLDIEDTSFINN--ITFG-------MKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFI 87 (210)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCc--cccC-------HHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence 67888999999998 443 11 121 1223 7899999988889988776543 456678899999999952
Q ss_pred C-CC-CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 121 S-EV-LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 121 ~-~~-~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
+ .. ..+....+.+++.+...-+.+...|.-+...-.-.-+|+|.+.. +++.|- ..
T Consensus 88 H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ---------------~f------ 146 (210)
T PRK08005 88 HAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQ---------------QF------ 146 (210)
T ss_pred cccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccc---------------ee------
Confidence 2 22 23456667776655444444445455444332222466654332 232221 00
Q ss_pred hHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
....++-++++++.. +..+- ..||| +.+++.++.++|||.+++||++++++|+....+.+
T Consensus 147 ---------~~~~~~KI~~l~~~~~~~~I~--VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~ 207 (210)
T PRK08005 147 ---------IAAMCEKVSQSREHFPAAECW--ADGGI-TLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQF 207 (210)
T ss_pred ---------cHHHHHHHHHHHHhcccCCEE--EECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHH
Confidence 011133344444321 23455 57999 69999999999999999999999888876665544
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.1e-09 Score=98.73 Aligned_cols=50 Identities=20% Similarity=0.403 Sum_probs=43.4
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
++.++++++.. ++||+ ++|||.|++|+.+++.+|||+|++||+++. ++|.
T Consensus 267 l~~v~~l~~~~~~~ipIi--~~GGI~t~~da~e~l~aGAd~V~vg~~~~~-~gP~ 318 (327)
T cd04738 267 TEVLRELYKLTGGKIPII--GVGGISSGEDAYEKIRAGASLVQLYTGLVY-EGPG 318 (327)
T ss_pred HHHHHHHHHHhCCCCcEE--EECCCCCHHHHHHHHHcCCCHHhccHHHHh-hCcH
Confidence 56777787766 79998 789999999999999999999999999986 3576
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.5e-07 Score=82.86 Aligned_cols=189 Identities=22% Similarity=0.305 Sum_probs=118.1
Q ss_pred HHHHHHHHcCCcEEEecc--CCccccccc-CCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEE-E-
Q 021609 46 EQARVAEEAGACAVMALE--RVPADIRSQ-GGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYV-D- 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~--~~~~~~~~~-~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~V-i- 119 (310)
+.|++++++|+|+++.-| ..|...+.. ...+.| ...+.++++.+.+|+.++.-.+ ...-...+.++|+|+| +
T Consensus 32 ~ea~~l~~~GvD~viveN~~d~P~~~~~~p~tva~m--~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 32 KDAMALEEGGVDAVMFENFFDAPFLKEVDPETVAAM--AVIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCcCCCCHHHHHHH--HHHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence 568899999999985444 222211000 000001 2355667788899998875543 3445678888999999 2
Q ss_pred ---eC---C-CC---CchhHHHHHHhcCCCCcEEEecC----------CHHHHHH-HHHhC-CCEEEEcCCCCCcchHHH
Q 021609 120 ---ES---E-VL---TPADEENHINKHNFRIPFVCGCR----------NLGEALR-RIREG-AAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 120 ---~~---~-~~---~~~~~~~~i~~~~~~i~~~v~~~----------t~~ea~~-~~~~G-ad~V~v~g~~~~~~~~~~ 177 (310)
.+ + .+ ...++.++-+..+.++.++.+++ +.+|..+ +...+ +|.|.+.|.. ||
T Consensus 110 ~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~-TG----- 183 (257)
T TIGR00259 110 VLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKT-TG----- 183 (257)
T ss_pred cEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCC-CC-----
Confidence 11 1 11 13345444444334466666543 4455444 44444 8999888753 22
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
...+++.++.+++. .+.|++ .+||+ +++++.++++. |||+.|||.|-
T Consensus 184 ----------------------------~~~d~~~l~~vr~~~~~~Pvl--lggGv-t~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 184 ----------------------------TEVDLELLKLAKETVKDTPVL--AGSGV-NLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred ----------------------------CCCCHHHHHHHHhccCCCeEE--EECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence 23457778888763 468998 58999 79999999987 99999999987
Q ss_pred cCC------CHHHHHHHHHHHHhcc
Q 021609 257 KSG------DPVKRAQAIVRAVTHY 275 (310)
Q Consensus 257 ~a~------dp~~~a~~l~~~i~~~ 275 (310)
+.+ || ...++|.+.+++.
T Consensus 232 ~~G~~~n~~D~-~rV~~Fm~~v~~~ 255 (257)
T TIGR00259 232 KDGVFNNFVDQ-ARVSQFVEKVAHG 255 (257)
T ss_pred cCCccCCCcCH-HHHHHHHHHHHHh
Confidence 533 33 3556677776544
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.6e-08 Score=97.78 Aligned_cols=130 Identities=18% Similarity=0.233 Sum_probs=90.3
Q ss_pred HHHHHHHHHcCCCEEEe--CCC--CCchhHHHHHHhcCCCCcEE-EecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVDE--SEV--LTPADEENHINKHNFRIPFV-CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~--~~~--~~~~~~~~~i~~~~~~i~~~-v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.+.. ++. ....+..+.++++.++++++ -++.|.++++.+.++|+|+|.+....+ .++.+
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~g--s~~~~- 306 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPG--SICTT- 306 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCC--ccccc-
Confidence 57788999999998752 222 23445566666554576655 458999999999999999998753222 11110
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai 255 (310)
+.+... ..+.+..+.++.+. .++||| ++|||+++.|+.+++.+|||+|++|++|
T Consensus 307 ----------r~~~~~-----------g~p~~~~~~~~~~~~~~~~~~vi--adGGi~~~~di~kAla~GA~~v~~G~~~ 363 (486)
T PRK05567 307 ----------RIVAGV-----------GVPQITAIADAAEAAKKYGIPVI--ADGGIRYSGDIAKALAAGASAVMLGSML 363 (486)
T ss_pred ----------eeecCC-----------CcCHHHHHHHHHHHhccCCCeEE--EcCCCCCHHHHHHHHHhCCCEEEECccc
Confidence 111111 12345566555442 468998 8999999999999999999999999999
Q ss_pred ccCC
Q 021609 256 FKSG 259 (310)
Q Consensus 256 ~~a~ 259 (310)
.+..
T Consensus 364 a~~~ 367 (486)
T PRK05567 364 AGTE 367 (486)
T ss_pred cccc
Confidence 9853
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-08 Score=94.62 Aligned_cols=131 Identities=19% Similarity=0.203 Sum_probs=94.9
Q ss_pred HHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 129 EENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 129 ~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
.++.+++.-....++-++.+.++++++.+.|+|.|.+.+++++.- + ...+
T Consensus 227 ~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrql---------------------d---------~~~~ 276 (361)
T cd04736 227 DLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQL---------------------D---------DAIA 276 (361)
T ss_pred HHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCCC---------------------c---------CCcc
Confidence 445555533345566679999999999999999999988765321 0 1234
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGL 288 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~ 288 (310)
+.+.+.++.+..++||+ ++|||++..|+.+++.+||++|++|++++. ..+..=.+.+ .+.+..+.+++
T Consensus 277 ~~~~L~ei~~~~~~~vi--~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~-----~la~~G~~gv-----~~~l~~l~~el 344 (361)
T cd04736 277 PIEALAEIVAATYKPVL--IDSGIRRGSDIVKALALGANAVLLGRATLY-----GLAARGEAGV-----SEVLRLLKEEI 344 (361)
T ss_pred HHHHHHHHHHHhCCeEE--EeCCCCCHHHHHHHHHcCCCEEEECHHHHH-----HHHhcCHHHH-----HHHHHHHHHHH
Confidence 57777777776679998 789999999999999999999999999884 1111011111 23456788888
Q ss_pred ccchhcccCccch
Q 021609 289 GEAMVGLNLSDHK 301 (310)
Q Consensus 289 ~~~~~~~~~~~~~ 301 (310)
...|-.+|.++++
T Consensus 345 ~~~m~l~G~~~i~ 357 (361)
T cd04736 345 DRTLALIGCPDIA 357 (361)
T ss_pred HHHHHHhCCCCHH
Confidence 8899988887764
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.2e-07 Score=80.00 Aligned_cols=184 Identities=16% Similarity=0.077 Sum_probs=110.5
Q ss_pred HHHHHHHHcCCcEE-Eec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeC-
Q 021609 46 EQARVAEEAGACAV-MAL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDES- 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~- 121 (310)
+..++++++|++++ +|+ +......-.++ +..++.+++ +.|+-+.+-+. ....++.+.++|+|.+..+
T Consensus 29 ~el~~l~~~g~d~lHiDVMDG~FVPNitfG-------p~~i~~i~~--~~~~DvHLMv~~P~~~i~~~~~aGad~It~H~ 99 (228)
T PRK08091 29 ETLTTLSENQLRLLHFDIADGQFSPFFTVG-------AIAIKQFPT--HCFKDVHLMVRDQFEVAKACVAAGADIVTLQV 99 (228)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccC-------HHHHHHhCC--CCCEEEEeccCCHHHHHHHHHHhCCCEEEEcc
Confidence 67889999999998 443 11111111223 678888874 67877765443 4566789999999999522
Q ss_pred CC-CCchhHHHHHHhcCC--CCcEEEecCCHHHHHH-HHHhCCCEEEEc--CCCCCcchHHHHHHHHhhccceEeecccC
Q 021609 122 EV-LTPADEENHINKHNF--RIPFVCGCRNLGEALR-RIREGAAMIRTK--GEAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 122 ~~-~~~~~~~~~i~~~~~--~i~~~v~~~t~~ea~~-~~~~Gad~V~v~--g~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
.. ..+....+.+++.+. ..-+...+.|.-+... ... -+|+|.+. .+++.|-. .
T Consensus 100 Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~-~vD~VLiMtV~PGfgGQ~---------------f----- 158 (228)
T PRK08091 100 EQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD-QIDLIQILTLDPRTGTKA---------------P----- 158 (228)
T ss_pred cCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh-hcCEEEEEEECCCCCCcc---------------c-----
Confidence 22 234566677776655 3333334445433333 333 46765433 22332210 0
Q ss_pred hhHHHHhhhccCCcHHHHHHHhh---c--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQ---L--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~---~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
....++-++++++ . .++.+- ..||| +.+++.++.++|||.+++||++++++|+....+.+++
T Consensus 159 ----------~~~~l~KI~~lr~~~~~~~~~~~Ie--VDGGI-~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~~ 225 (228)
T PRK08091 159 ----------SDLILDRVIQVENRLGNRRVEKLIS--IDGSM-TLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKS 225 (228)
T ss_pred ----------cHHHHHHHHHHHHHHHhcCCCceEE--EECCC-CHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence 0011222222222 1 233444 57999 6999999999999999999999998888777777765
Q ss_pred HH
Q 021609 271 AV 272 (310)
Q Consensus 271 ~i 272 (310)
.+
T Consensus 226 ~~ 227 (228)
T PRK08091 226 SL 227 (228)
T ss_pred hh
Confidence 43
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-08 Score=93.98 Aligned_cols=121 Identities=21% Similarity=0.232 Sum_probs=83.2
Q ss_pred CCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
++++++- +.+.++++++.+.|+|.|.+.++++.. +. ....+++.+.+++
T Consensus 221 ~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr~------------------ld------------~~~~~~~~l~~i~ 270 (351)
T cd04737 221 GLPVIVKGIQSPEDADVAINAGADGIWVSNHGGRQ------------------LD------------GGPASFDSLPEIA 270 (351)
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCcc------------------CC------------CCchHHHHHHHHH
Confidence 4566654 778899999999999999996654311 00 1123456667776
Q ss_pred hcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcc
Q 021609 218 QLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGL 295 (310)
Q Consensus 218 ~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 295 (310)
+.. ++||+ ++|||++..|+.+++.+||++|++|++++.. .+..=.+.+ .+.+..+..++.+.|-.+
T Consensus 271 ~a~~~~i~vi--~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~-----la~~G~~gv-----~~~l~~l~~El~~~m~l~ 338 (351)
T cd04737 271 EAVNHRVPII--FDSGVRRGEHVFKALASGADAVAVGRPVLYG-----LALGGAQGV-----ASVLEHLNKELKIVMQLA 338 (351)
T ss_pred HHhCCCCeEE--EECCCCCHHHHHHHHHcCCCEEEECHHHHHH-----HhhchHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 554 69998 7899999999999999999999999988851 111001111 233456677777777777
Q ss_pred cCccch
Q 021609 296 NLSDHK 301 (310)
Q Consensus 296 ~~~~~~ 301 (310)
|.++++
T Consensus 339 G~~~i~ 344 (351)
T cd04737 339 GTRTIE 344 (351)
T ss_pred CCCCHH
Confidence 776653
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.8e-07 Score=79.23 Aligned_cols=185 Identities=16% Similarity=0.215 Sum_probs=112.4
Q ss_pred HHHHHHHHcCCcEE-Eec-cC--CcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-
Q 021609 46 EQARVAEEAGACAV-MAL-ER--VPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD- 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~--~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi- 119 (310)
+..+.+++ |++++ +|+ +. +|. -.++ +..++.+++.+++|+-+.+-.. ....++.+.++|+|.+.
T Consensus 19 ~el~~l~~-g~d~lH~DiMDG~FVPN--~tfg-------~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~ 88 (229)
T PRK09722 19 EQIEFLNS-KADYFHIDIMDGHFVPN--LTLS-------PFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITL 88 (229)
T ss_pred HHHHHHHh-CCCEEEEecccCccCCC--cccC-------HHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence 45667777 89998 443 11 121 1233 7899999988889988765443 45667889999999995
Q ss_pred eCCCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecccC
Q 021609 120 ESEVL--TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 120 ~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
..... .+....+.+++.+...-+...+.|.-+...-.-.-+|+|-+.. ++++|-. .
T Consensus 89 H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~---------------f----- 148 (229)
T PRK09722 89 HPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQP---------------F----- 148 (229)
T ss_pred CccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchh---------------c-----
Confidence 33322 3556667776655544445555565454443323467654332 2332210 0
Q ss_pred hhHHHHhhhccCCcHHHHHHHhh---cC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc-cccc-CCCHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQ---LG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS-GVFK-SGDPVKRAQAI 268 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~---~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs-ai~~-a~dp~~~a~~l 268 (310)
....++-++++++ .- ++.+- ..||| +.+++.++.++|||.+++|| ++++ ++|+....+.+
T Consensus 149 ----------i~~~l~KI~~lr~~~~~~~~~~~Ie--VDGGI-~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l 215 (229)
T PRK09722 149 ----------IPEMLDKIAELKALRERNGLEYLIE--VDGSC-NQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIM 215 (229)
T ss_pred ----------cHHHHHHHHHHHHHHHhcCCCeEEE--EECCC-CHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHH
Confidence 0011222222222 11 33344 57999 59999999999999999995 5987 56888787777
Q ss_pred HHHHh
Q 021609 269 VRAVT 273 (310)
Q Consensus 269 ~~~i~ 273 (310)
++.++
T Consensus 216 ~~~~~ 220 (229)
T PRK09722 216 TAQIE 220 (229)
T ss_pred HHHHH
Confidence 76554
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.6e-08 Score=95.46 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCCEEE--eCCCCC--chhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHH
Q 021609 104 FVEAQILEAIGIDYVD--ESEVLT--PADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEA 177 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi--~~~~~~--~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~ 177 (310)
.+.++.+.++|+|.|. .++.-+ ..+.++.+++..+++++++ .+.|.++++.+.++|+|+|.+. |++.+ +.+
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~---~~t 319 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSI---CIT 319 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcc---ccc
Confidence 3678899999999995 333322 2356677766556788877 5889999999999999999874 22211 100
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccC-CcHHHHHH---HhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQ---TKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~---i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
+.+. +.+ +.+..+.. +.+..++|++ ++|||+++.|+.+++.+|||+|++|+
T Consensus 320 -----------~~~~------------~~g~p~~~ai~~~~~~~~~~~v~vI--adGGi~~~~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 320 -----------QEVC------------AVGRPQASAVYHVARYARERGVPCI--ADGGIKNSGDICKALALGADCVMLGS 374 (495)
T ss_pred -----------chhc------------cCCCChHHHHHHHHHHHhhcCCeEE--ecCCCCCHHHHHHHHHcCCCEEEECc
Confidence 0111 112 22333333 3333578998 89999999999999999999999999
Q ss_pred ccccCC
Q 021609 254 GVFKSG 259 (310)
Q Consensus 254 ai~~a~ 259 (310)
.|....
T Consensus 375 ~~a~~~ 380 (495)
T PTZ00314 375 LLAGTE 380 (495)
T ss_pred hhcccc
Confidence 999843
|
|
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7e-07 Score=78.09 Aligned_cols=155 Identities=17% Similarity=0.240 Sum_probs=110.7
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-CcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-GHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
.+++++.++|.+.+ +-+| . ..-.+.|+.+++.+. -+++.-.. -+-++++.+.++|+++++.+..
T Consensus 29 ~~a~Ali~gGi~~IEITl~-------s------p~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~ 94 (211)
T COG0800 29 PLAKALIEGGIPAIEITLR-------T------PAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL 94 (211)
T ss_pred HHHHHHHHcCCCeEEEecC-------C------CCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC
Confidence 46888999999987 3332 0 111578888888775 33333221 2357889999999999975542
Q ss_pred CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
..++.+... ..+++++.++.|.-|+..+.++|++.+++++....|.
T Consensus 95 --~~ev~~~a~--~~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg------------------------------ 140 (211)
T COG0800 95 --NPEVAKAAN--RYGIPYIPGVATPTEIMAALELGASALKFFPAEVVGG------------------------------ 140 (211)
T ss_pred --CHHHHHHHH--hCCCcccCCCCCHHHHHHHHHcChhheeecCccccCc------------------------------
Confidence 345555554 4689999999999999999999999999886532221
Q ss_pred hccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 204 KKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 204 ~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
...++.+.. ...+++. ..||| +++++.+++.+|+.+|.+||.++.
T Consensus 141 ------~~~~ka~~gP~~~v~~~--pTGGV-s~~N~~~yla~gv~avG~Gs~l~~ 186 (211)
T COG0800 141 ------PAMLKALAGPFPQVRFC--PTGGV-SLDNAADYLAAGVVAVGLGSWLVP 186 (211)
T ss_pred ------HHHHHHHcCCCCCCeEe--ecCCC-CHHHHHHHHhCCceEEecCccccC
Confidence 112222221 1346676 78999 699999999999999999999996
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.5e-07 Score=86.48 Aligned_cols=121 Identities=24% Similarity=0.284 Sum_probs=83.3
Q ss_pred CCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 138 FRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 138 ~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
.++++++ ++.+.+++.++.+.|+|.|.+.|+++... . ...++.+.+.++
T Consensus 222 ~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql------------------d------------~~p~t~~~L~ei 271 (366)
T PLN02979 222 TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL------------------D------------YVPATISALEEV 271 (366)
T ss_pred cCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCCC------------------C------------CchhHHHHHHHH
Confidence 3566665 48899999999999999999988765220 0 112345566666
Q ss_pred hhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhc
Q 021609 217 KQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVG 294 (310)
Q Consensus 217 ~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 294 (310)
.+. .++||+ ++|||++..|+.+++.+|||+|.+|+.++.+ .+..=.+.+ .+.+..+.+++-..|..
T Consensus 272 ~~~~~~~~~Vi--~dGGIr~G~Di~KALALGAdaV~iGrp~L~~-----la~~G~~Gv-----~~~l~~l~~El~~~m~l 339 (366)
T PLN02979 272 VKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVFS-----LAAEGEAGV-----RKVLQMLRDEFELTMAL 339 (366)
T ss_pred HHHhCCCCeEE--EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHH-----HHhcCHHHH-----HHHHHHHHHHHHHHHHH
Confidence 553 358998 7999999999999999999999999988841 111001111 23345666777777777
Q ss_pred ccCccc
Q 021609 295 LNLSDH 300 (310)
Q Consensus 295 ~~~~~~ 300 (310)
+|.+++
T Consensus 340 ~G~~~i 345 (366)
T PLN02979 340 SGCRSL 345 (366)
T ss_pred hCCCCH
Confidence 775554
|
|
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.5e-08 Score=93.18 Aligned_cols=122 Identities=23% Similarity=0.311 Sum_probs=82.9
Q ss_pred CCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 138 FRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 138 ~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
.++++++ ++.+.+++.++.+.|++.|.+.|++++.. + ...++.+.+.++
T Consensus 224 ~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~---------------------d---------~~~~~~~~L~~i 273 (356)
T PF01070_consen 224 WKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQL---------------------D---------WGPPTIDALPEI 273 (356)
T ss_dssp CSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSS---------------------T---------TS-BHHHHHHHH
T ss_pred cCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccC---------------------c---------cccccccccHHH
Confidence 3455444 46788899999999999999988776431 0 123446666666
Q ss_pred hhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhc
Q 021609 217 KQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVG 294 (310)
Q Consensus 217 ~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 294 (310)
++. .++||+ ++|||++..|+.+++.+||++|.+|+.++. ..+..=.+.+. +.+..+.+++-..|..
T Consensus 274 ~~~~~~~~~i~--~dgGir~g~Dv~kalaLGA~~v~igr~~l~-----~l~~~g~~gv~-----~~~~~l~~el~~~m~l 341 (356)
T PF01070_consen 274 RAAVGDDIPII--ADGGIRRGLDVAKALALGADAVGIGRPFLY-----ALAAGGEEGVE-----RVLEILKEELKRAMFL 341 (356)
T ss_dssp HHHHTTSSEEE--EESS--SHHHHHHHHHTT-SEEEESHHHHH-----HHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HhhhcCCeeEE--EeCCCCCHHHHHHHHHcCCCeEEEccHHHH-----HHHHhhHHHHH-----HHHHHHHHHHHHHHHH
Confidence 653 369998 799999999999999999999999999885 22222223332 3356788888899999
Q ss_pred ccCccch
Q 021609 295 LNLSDHK 301 (310)
Q Consensus 295 ~~~~~~~ 301 (310)
+|.++++
T Consensus 342 ~G~~~~~ 348 (356)
T PF01070_consen 342 LGARSIA 348 (356)
T ss_dssp HT-SBGG
T ss_pred HCCCCHH
Confidence 9988875
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.2e-08 Score=92.72 Aligned_cols=121 Identities=22% Similarity=0.225 Sum_probs=86.0
Q ss_pred CCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
++++++ ++.+.++++++.+.|+|.|.+.++++... . ...++.+.+.+++
T Consensus 253 ~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~~------------------d------------~~~~t~~~L~ei~ 302 (383)
T cd03332 253 DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQV------------------D------------GSIAALDALPEIV 302 (383)
T ss_pred CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcCC------------------C------------CCcCHHHHHHHHH
Confidence 455554 47889999999999999999887654210 0 1234466777776
Q ss_pred hcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcc
Q 021609 218 QLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGL 295 (310)
Q Consensus 218 ~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 295 (310)
+.. ++||+ ++|||++..|+.+++.+|||+|.+|+.++. ..+..=.+.+ .+-+..+..++...|-.+
T Consensus 303 ~~~~~~~~vi--~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~-----~l~~~G~~gv-----~~~l~~l~~El~~~m~l~ 370 (383)
T cd03332 303 EAVGDRLTVL--FDSGVRTGADIMKALALGAKAVLIGRPYAY-----GLALGGEDGV-----EHVLRNLLAELDLTMGLA 370 (383)
T ss_pred HHhcCCCeEE--EeCCcCcHHHHHHHHHcCCCEEEEcHHHHH-----HHHhccHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 543 59998 789999999999999999999999999884 1111001111 233456778888888888
Q ss_pred cCccch
Q 021609 296 NLSDHK 301 (310)
Q Consensus 296 ~~~~~~ 301 (310)
|.++++
T Consensus 371 G~~~i~ 376 (383)
T cd03332 371 GIRSIA 376 (383)
T ss_pred CCCCHH
Confidence 888764
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.7e-07 Score=81.43 Aligned_cols=193 Identities=17% Similarity=0.212 Sum_probs=122.7
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+..-|+++.+. ..+..+ . ......+....+...+||.+.+--+ ..+.++.+.+.|+
T Consensus 24 n~~n~e~~~avi~aAe~~~~Pvii~~~~~--~~~~~~-~--~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~ 98 (281)
T PRK06806 24 SVANMEMVMGAIKAAEELNSPIILQIAEV--RLNHSP-L--HLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGF 98 (281)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcCcc--hhccCC-h--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 4455554 445577777766666321 111111 1 0012345555667799999875333 5678899999999
Q ss_pred CEE-EeCCCCCch-------hHHHHHHhcCC------C-C--------cEEEecCCHHHHHHHHH-hCCCEEEEc-CCC-
Q 021609 116 DYV-DESEVLTPA-------DEENHINKHNF------R-I--------PFVCGCRNLGEALRRIR-EGAAMIRTK-GEA- 169 (310)
Q Consensus 116 d~V-i~~~~~~~~-------~~~~~i~~~~~------~-i--------~~~v~~~t~~ea~~~~~-~Gad~V~v~-g~~- 169 (310)
+.| +-...++.. ++.++.++++. + + .+..++++++++.+..+ .|+|++.+. |..
T Consensus 99 tsVm~d~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~h 178 (281)
T PRK06806 99 TSVMFDGSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAH 178 (281)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCC
Confidence 999 422223322 33344443321 0 1 12345789999999874 599999873 221
Q ss_pred CCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 170 GTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
++. + ....-.++.++++++..++|++++.+.|| +.+++.++++.|+++|
T Consensus 179 g~~-------------------~-----------~~~~l~~~~L~~i~~~~~iPlV~hG~SGI-~~e~~~~~i~~G~~ki 227 (281)
T PRK06806 179 GMY-------------------N-----------GDPNLRFDRLQEINDVVHIPLVLHGGSGI-SPEDFKKCIQHGIRKI 227 (281)
T ss_pred CCC-------------------C-----------CCCccCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHHcCCcEE
Confidence 111 0 01233578899999888999997733399 6999999999999999
Q ss_pred EEccccccCCCHHHHHHHHHHH
Q 021609 250 FVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 250 ~VGsai~~a~dp~~~a~~l~~~ 271 (310)
.|.|.|.. +|...++++++.
T Consensus 228 nv~T~i~~--a~~~a~~~~~~~ 247 (281)
T PRK06806 228 NVATATFN--SVITAVNNLVLN 247 (281)
T ss_pred EEhHHHHH--HHHHHHHHHHHh
Confidence 99999997 677777766543
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=90.34 Aligned_cols=170 Identities=21% Similarity=0.228 Sum_probs=100.8
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCC--CC-CHHHHHHHHhhcCcceeeccccCcHHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSVTIPVMAKARIGHFVEAQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~ 109 (310)
..|+.+.++|+|+| +|+ | .++..+.+||+-. .+ ..+.++.++++++.++.++.+++..+..
T Consensus 145 ~AA~ra~~aGfDgV-eih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~-- 221 (343)
T cd04734 145 DAARRCQAGGLDGV-ELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDT-- 221 (343)
T ss_pred HHHHHHHHcCCCEE-EEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhcc--
Confidence 35778889999997 665 1 2333344566521 11 2256777788888777777776632210
Q ss_pred HHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhC-CCEEEEcCCCCCcchHHHHHHHHhhccce
Q 021609 110 LEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREG-AAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~G-ad~V~v~g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
....+..+..+ -+..+.+.| +|++.++++....... ..
T Consensus 222 -----------~~G~~~~e~~~-------------------~~~~l~~~G~vd~i~vs~g~~~~~~~---~~-------- 260 (343)
T cd04734 222 -----------EGGLSPDEALE-------------------IAARLAAEGLIDYVNVSAGSYYTLLG---LA-------- 260 (343)
T ss_pred -----------CCCCCHHHHHH-------------------HHHHHHhcCCCCEEEeCCCCCCcccc---cc--------
Confidence 01112222221 234455677 8999886543211000 00
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQA 267 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~ 267 (310)
...+... ......++..+.+++.+++||+ +.|||.+++++.++++.| +|.|++|++++. ||.
T Consensus 261 ~~~~~~~--------~~~~~~~~~~~~ik~~~~ipvi--~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la--dP~----- 323 (343)
T cd04734 261 HVVPSMG--------MPPGPFLPLAARIKQAVDLPVF--HAGRIRDPAEAEQALAAGHADMVGMTRAHIA--DPH----- 323 (343)
T ss_pred cccCCCC--------CCcchhHHHHHHHHHHcCCCEE--eeCCCCCHHHHHHHHHcCCCCeeeecHHhHh--Ccc-----
Confidence 0000000 0112236777888888899998 789999999999999764 999999999997 776
Q ss_pred HHHHHhccC
Q 021609 268 IVRAVTHYS 276 (310)
Q Consensus 268 l~~~i~~~~ 276 (310)
|.+.+.+..
T Consensus 324 l~~k~~~g~ 332 (343)
T cd04734 324 LVAKAREGR 332 (343)
T ss_pred HHHHHHcCC
Confidence 444444443
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-07 Score=87.60 Aligned_cols=156 Identities=21% Similarity=0.266 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCC--CC-CHHHHHHHHhhc--CcceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVAR--MS-DPQLIKEIKQSV--TIPVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~--~~-~~~~i~~i~~~~--~iPv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| +|+ |. +...+.+||+.. .+ ..+.++++++.+ ++||.++.......
T Consensus 145 ~aA~~a~~aGfDgv-eih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~-- 221 (327)
T cd02803 145 AAARRAKEAGFDGV-EIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFV-- 221 (327)
T ss_pred HHHHHHHHcCCCEE-EEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccC--
Confidence 36888899999997 654 11 334444555521 11 135677778777 67888876543100
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
....+..+..+ -+.++.+.|+|+|.++++......
T Consensus 222 -------------~~g~~~~e~~~-------------------la~~l~~~G~d~i~vs~g~~~~~~------------- 256 (327)
T cd02803 222 -------------PGGLTLEEAIE-------------------IAKALEEAGVDALHVSGGSYESPP------------- 256 (327)
T ss_pred -------------CCCCCHHHHHH-------------------HHHHHHHcCCCEEEeCCCCCcccc-------------
Confidence 00011111111 244456779999988765432110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~a~dp~ 262 (310)
...+... ......++.++.+++..++||+ +.|||.+++++.++++. |||.|++||+++. ||.
T Consensus 257 -~~~~~~~--------~~~~~~~~~~~~ir~~~~iPVi--~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la--dP~ 319 (327)
T cd02803 257 -PIIPPPY--------VPEGYFLELAEKIKKAVKIPVI--AVGGIRDPEVAEEILAEGKADLVALGRALLA--DPD 319 (327)
T ss_pred -cccCCCC--------CCcchhHHHHHHHHHHCCCCEE--EeCCCCCHHHHHHHHHCCCCCeeeecHHHHh--Ccc
Confidence 0000000 0012235677888888899998 78999999999999987 7999999999997 664
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=89.47 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCC--CC-CHHHHHHHHhhcCcceeeccccCcHHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSVTIPVMAKARIGHFVEAQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~ 109 (310)
..|+.+.++|+|+| +|+ | .++..+.+||+-. ++ ..+.++.||++++.||.++.......
T Consensus 146 ~aA~~a~~aGfDgV-eih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~---- 220 (337)
T PRK13523 146 QAAVRAKEAGFDVI-EIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYH---- 220 (337)
T ss_pred HHHHHHHHcCCCEE-EEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccC----
Confidence 35888899999997 664 2 2456666677631 22 23577778888888888877643100
Q ss_pred HHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceE
Q 021609 110 LEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIR 189 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~ 189 (310)
....++.+..++ +..+.+.|+|+|.++++.....
T Consensus 221 -----------~~G~~~~e~~~i-------------------~~~l~~~gvD~i~vs~g~~~~~---------------- 254 (337)
T PRK13523 221 -----------PGGLTVQDYVQY-------------------AKWMKEQGVDLIDVSSGAVVPA---------------- 254 (337)
T ss_pred -----------CCCCCHHHHHHH-------------------HHHHHHcCCCEEEeCCCCCCCC----------------
Confidence 011122222222 3345567999999986532110
Q ss_pred eecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHH
Q 021609 190 VLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l 268 (310)
... ......+++.+++++..++||+ +.|+|.+++++.++++.| ||.|++|++++. ||.. .+.+
T Consensus 255 ---~~~--------~~~~~~~~~~~~ik~~~~ipVi--~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia--dP~~-~~k~ 318 (337)
T PRK13523 255 ---RID--------VYPGYQVPFAEHIREHANIATG--AVGLITSGAQAEEILQNNRADLIFIGRELLR--NPYF-PRIA 318 (337)
T ss_pred ---CCC--------CCccccHHHHHHHHhhcCCcEE--EeCCCCCHHHHHHHHHcCCCChHHhhHHHHh--CccH-HHHH
Confidence 000 0012246677888888899998 679999999999999876 999999999997 7752 3334
Q ss_pred HHHHhcc
Q 021609 269 VRAVTHY 275 (310)
Q Consensus 269 ~~~i~~~ 275 (310)
.+.+...
T Consensus 319 ~~~~~~~ 325 (337)
T PRK13523 319 AKELGFE 325 (337)
T ss_pred HHHcCCC
Confidence 4444433
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-06 Score=76.69 Aligned_cols=187 Identities=13% Similarity=0.094 Sum_probs=109.8
Q ss_pred HHHHHHHHcCCcEE-Eec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eC
Q 021609 46 EQARVAEEAGACAV-MAL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~ 121 (310)
+..+.++++|++++ +|+ +......-.++ ++.++.+++ ++|+-+.+-+. ....++.+.++|+|.|. ..
T Consensus 36 ~el~~l~~~g~d~lHiDVMDG~FVPNitfG-------p~~i~~i~~--~~p~DvHLMV~~P~~~i~~~~~aGad~It~H~ 106 (254)
T PRK14057 36 RYLQQLEALNQPLLHLDLMDGQFCPQFTVG-------PWAVGQLPQ--TFIKDVHLMVADQWTAAQACVKAGAHCITLQA 106 (254)
T ss_pred HHHHHHHHCCCCEEEEeccCCccCCccccC-------HHHHHHhcc--CCCeeEEeeeCCHHHHHHHHHHhCCCEEEEee
Confidence 67888999999998 443 11111001223 788888875 57766654433 45667889999999995 22
Q ss_pred CC-CCchhHHHHHHhcCCC---------CcEEEecCCHHHHHHHHHhCCCEEEEc--CCCCCcchHHHHHHHHhhccceE
Q 021609 122 EV-LTPADEENHINKHNFR---------IPFVCGCRNLGEALRRIREGAAMIRTK--GEAGTGNIIEAVRHVRSVMGDIR 189 (310)
Q Consensus 122 ~~-~~~~~~~~~i~~~~~~---------i~~~v~~~t~~ea~~~~~~Gad~V~v~--g~~~~~~~~~~~~~~r~~~~~~~ 189 (310)
.. ..+....+.+++.+.. .-+...+.|.-+...-.-.-+|+|.+. .+++.|--
T Consensus 107 Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~--------------- 171 (254)
T PRK14057 107 EGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKM--------------- 171 (254)
T ss_pred ccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchh---------------
Confidence 32 2345566667665431 223333445444333222236765433 12322210
Q ss_pred eecccChhHHHHhhhccCCcHHHHHHHhh---c--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 021609 190 VLRNMDDDEVFTFAKKIAAPYDLVMQTKQ---L--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~~i~~i~~---~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~ 264 (310)
. ....++-++++++ . .++.+- ..||| +.+++.++.++|||.+++||++++++|+.+.
T Consensus 172 F---------------i~~~l~KI~~lr~~~~~~~~~~~Ie--VDGGI-~~~ti~~l~~aGad~~V~GSalF~~~d~~~~ 233 (254)
T PRK14057 172 R---------------SSDLHERVAQLLCLLGDKREGKIIV--IDGSL-TQDQLPSLIAQGIDRVVSGSALFRDDRLVEN 233 (254)
T ss_pred c---------------cHHHHHHHHHHHHHHHhcCCCceEE--EECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHH
Confidence 0 0111222222222 1 133444 57999 6999999999999999999999998888888
Q ss_pred HHHHHHHHhc
Q 021609 265 AQAIVRAVTH 274 (310)
Q Consensus 265 a~~l~~~i~~ 274 (310)
.+.+++.+..
T Consensus 234 i~~l~~~~~~ 243 (254)
T PRK14057 234 TRSWRAMFKV 243 (254)
T ss_pred HHHHHHHHhh
Confidence 7777655443
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-06 Score=74.57 Aligned_cols=186 Identities=16% Similarity=0.216 Sum_probs=113.1
Q ss_pred HHHHHHHHcCCcEEEecc---C--CcccccccCCCCCCCCHHHHHHHHhhcCcce--eecccc-CcHHHHHHHHHcCCCE
Q 021609 46 EQARVAEEAGACAVMALE---R--VPADIRSQGGVARMSDPQLIKEIKQSVTIPV--MAKARI-GHFVEAQILEAIGIDY 117 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~--~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv--~vk~~~-~~~~~a~~~~~aGad~ 117 (310)
+.++++.++|+||+ .|+ . .|+. .+| +-.++.+|+.++.|- -+..-. ...+-+.....+||+.
T Consensus 21 ~e~~~~l~~Gadwl-HlDVMDg~FVpNi--T~G-------~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~ 90 (224)
T KOG3111|consen 21 AECKKMLDAGADWL-HLDVMDGHFVPNI--TFG-------PPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASL 90 (224)
T ss_pred HHHHHHHHcCCCeE-EEeeecccccCCc--ccc-------hHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcce
Confidence 57889999999998 554 1 1221 123 568889998887763 222222 3345567888999999
Q ss_pred EE-eCCC-CCchhHHHHHHhcCCCCcEEEecCCH-HHHHHHHHhCCCEEEEc--CCCCCcchHHHHHHHHhhccceEeec
Q 021609 118 VD-ESEV-LTPADEENHINKHNFRIPFVCGCRNL-GEALRRIREGAAMIRTK--GEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 118 Vi-~~~~-~~~~~~~~~i~~~~~~i~~~v~~~t~-~ea~~~~~~Gad~V~v~--g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
+. .... -++.++.+.+++.+...-+.+-..|. +++.... .-.|++-+. -++++|- .++.+
T Consensus 91 ~tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~-~~~D~vLvMtVePGFGGQ-----kFme~--------- 155 (224)
T KOG3111|consen 91 FTFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLA-EHVDMVLVMTVEPGFGGQ-----KFMED--------- 155 (224)
T ss_pred EEEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhh-ccccEEEEEEecCCCchh-----hhHHH---------
Confidence 95 2222 23678888887654332222223333 3333322 234554322 1232221 00000
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHh-hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTK-QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~-~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
-..-++.++ +..++-+- ..||+ +++++.++.++||+.++.||+++++.||....+.+++.
T Consensus 156 ----------------mm~KV~~lR~kyp~l~ie--vDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~ 216 (224)
T KOG3111|consen 156 ----------------MMPKVEWLREKYPNLDIE--VDGGV-GPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNS 216 (224)
T ss_pred ----------------HHHHHHHHHHhCCCceEE--ecCCc-CcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHH
Confidence 012244454 33444443 37999 69999999999999999999999999999998888777
Q ss_pred Hhcc
Q 021609 272 VTHY 275 (310)
Q Consensus 272 i~~~ 275 (310)
+..+
T Consensus 217 v~~a 220 (224)
T KOG3111|consen 217 VEKA 220 (224)
T ss_pred Hhhh
Confidence 7644
|
|
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.9e-06 Score=75.10 Aligned_cols=178 Identities=22% Similarity=0.241 Sum_probs=118.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC--
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE-- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~-- 122 (310)
..+++.+.+||+.+ |+ - .++++++.+++..++|+.+--. ..+..-.+.++|||.|- +.-
T Consensus 31 ~i~~AA~~ggAt~v-DI-------A--------adp~LV~~~~~~s~lPICVSaV--ep~~f~~aV~AGAdliEIGNfDs 92 (242)
T PF04481_consen 31 AIVKAAEIGGATFV-DI-------A--------ADPELVKLAKSLSNLPICVSAV--EPELFVAAVKAGADLIEIGNFDS 92 (242)
T ss_pred HHHHHHHccCCceE-Ee-------c--------CCHHHHHHHHHhCCCCeEeecC--CHHHHHHHHHhCCCEEEecchHH
Confidence 46788888999975 54 1 2389999999999999987643 22455678899999994 331
Q ss_pred ------CCCchhHHHHHHh---cCCCCcEEEecC-CH------HHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 123 ------VLTPADEENHINK---HNFRIPFVCGCR-NL------GEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 123 ------~~~~~~~~~~i~~---~~~~i~~~v~~~-t~------~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
.++.+++.++.++ .-++++..+.+. +. +-|..+.++|+|++-+.|.+.... .
T Consensus 93 FY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p-~----------- 160 (242)
T PF04481_consen 93 FYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKP-T----------- 160 (242)
T ss_pred HHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCC-C-----------
Confidence 2455555555544 336666666643 22 346667788999998776432110 0
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a 265 (310)
.-..-++++ ...+.+.....+.+.+++||+ ++.|+ +.-.+..++.+||.||.|||++-+-.|...+.
T Consensus 161 ------~~g~lglIe---kaapTLAaay~ISr~v~iPVl--cASGl-S~vT~PmAiaaGAsGVGVGSavn~Ln~~~aMv 227 (242)
T PF04481_consen 161 ------SPGILGLIE---KAAPTLAAAYAISRAVSIPVL--CASGL-SAVTAPMAIAAGASGVGVGSAVNRLNDEVAMV 227 (242)
T ss_pred ------CcchHHHHH---HHhHHHHHHHHHHhccCCceE--eccCc-chhhHHHHHHcCCcccchhHHhhhcccHHHHH
Confidence 000001110 113345566677777899999 68999 57889999999999999999999866655443
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.2e-07 Score=90.22 Aligned_cols=128 Identities=23% Similarity=0.267 Sum_probs=85.0
Q ss_pred HHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 130 ENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 130 ~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
.+.+++. .++++++ ++.+.++++++.+.|+|.|.+.|+++... . ...+
T Consensus 216 i~wlr~~-~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrql------------------d------------~~~~ 264 (367)
T PLN02493 216 VQWLQTI-TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQL------------------D------------YVPA 264 (367)
T ss_pred HHHHHhc-cCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCCC------------------C------------Cchh
Confidence 3444432 3456555 47889999999999999999988765210 0 1123
Q ss_pred cHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhh
Q 021609 209 PYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSC 286 (310)
Q Consensus 209 ~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~ 286 (310)
+.+.+.++.+. .++||+ ++|||++..|+.+++.+||++|.+|+.++.. .+..=.+.+ .+.+..+.+
T Consensus 265 t~~~L~ei~~av~~~~~vi--~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~-----l~~~G~~gv-----~~~l~~l~~ 332 (367)
T PLN02493 265 TISALEEVVKATQGRIPVF--LDGGVRRGTDVFKALALGASGIFIGRPVVFS-----LAAEGEAGV-----RKVLQMLRD 332 (367)
T ss_pred HHHHHHHHHHHhCCCCeEE--EeCCcCcHHHHHHHHHcCCCEEEEcHHHHHH-----HHhcCHHHH-----HHHHHHHHH
Confidence 46666666553 358998 7899999999999999999999999988841 110000111 233445666
Q ss_pred hcccchhcccCccc
Q 021609 287 GLGEAMVGLNLSDH 300 (310)
Q Consensus 287 ~~~~~~~~~~~~~~ 300 (310)
.+-..|..+|.+++
T Consensus 333 el~~~m~l~G~~~i 346 (367)
T PLN02493 333 EFELTMALSGCRSL 346 (367)
T ss_pred HHHHHHHHhCCCCH
Confidence 66677777665544
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-07 Score=89.96 Aligned_cols=88 Identities=25% Similarity=0.372 Sum_probs=67.6
Q ss_pred CCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 138 FRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 138 ~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
.++++++ ++.+.++++++.+.|+|.|.+.|.++.. +. ...++.+.+.++
T Consensus 222 ~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~------------------~d------------~~~~t~~~L~ev 271 (364)
T PLN02535 222 TNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQ------------------LD------------YSPATISVLEEV 271 (364)
T ss_pred cCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCC------------------CC------------CChHHHHHHHHH
Confidence 4566666 4889999999999999999988765311 00 012235566666
Q ss_pred hhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 217 KQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 217 ~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.+.. ++||+ ++|||++..|+.+++.+||++|++|++++.
T Consensus 272 ~~av~~~ipVi--~dGGIr~g~Dv~KALalGA~aV~vGr~~l~ 312 (364)
T PLN02535 272 VQAVGGRVPVL--LDGGVRRGTDVFKALALGAQAVLVGRPVIY 312 (364)
T ss_pred HHHHhcCCCEE--eeCCCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 5533 69998 799999999999999999999999999986
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-08 Score=93.54 Aligned_cols=50 Identities=22% Similarity=0.363 Sum_probs=41.0
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
..++.++.+.. ++|++ +.|||.|++|+.+++.+||+.|++||+++. .+|.
T Consensus 275 l~~v~~~~~~~~~~ipii--g~GGI~~~~da~e~l~aGA~~Vqv~ta~~~-~Gp~ 326 (335)
T TIGR01036 275 TEIIRRLYAELQGRLPII--GVGGISSAQDALEKIRAGASLLQIYSGFIY-WGPP 326 (335)
T ss_pred HHHHHHHHHHhCCCCCEE--EECCCCCHHHHHHHHHcCCcHHHhhHHHHH-hCch
Confidence 44566665544 68998 789999999999999999999999999986 2454
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.2e-08 Score=91.50 Aligned_cols=152 Identities=21% Similarity=0.228 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCC--CC-CHHHHHHHHhhcC----cceeeccccCcHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSVT----IPVMAKARIGHFV 105 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~~----iPv~vk~~~~~~~ 105 (310)
+.|+.+.++|+|+| +|+ | .+...+.+||+-. .+ ..+.++.++++++ .++.++.+++..+
T Consensus 148 ~aA~~a~~aGfDgV-eih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~ 226 (353)
T cd04735 148 EATRRAIEAGFDGV-EIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE 226 (353)
T ss_pred HHHHHHHHcCCCEE-EEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc
Confidence 46888899999997 554 3 2344556677731 11 2356677788775 4555555554321
Q ss_pred HHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhc
Q 021609 106 EAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVM 185 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~ 185 (310)
.. ....+..+..+ -+..+.+.|+|+|.++++.++...
T Consensus 227 ~~-------------~~g~~~ee~~~-------------------i~~~L~~~GvD~I~Vs~g~~~~~~----------- 263 (353)
T cd04735 227 PE-------------EPGIRMEDTLA-------------------LVDKLADKGLDYLHISLWDFDRKS----------- 263 (353)
T ss_pred cc-------------CCCCCHHHHHH-------------------HHHHHHHcCCCEEEeccCcccccc-----------
Confidence 10 01122222222 234456779999999865432210
Q ss_pred cceEeecccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 186 GDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 186 ~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
.. .........+.+++.. ++||+ +.|||.|++++.++++.|||.|++|++++. ||.
T Consensus 264 ------~~-----------~~~~~~~~~~~ik~~~~~~iPVi--~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia--dPd 321 (353)
T cd04735 264 ------RR-----------GRDDNQTIMELVKERIAGRLPLI--AVGSINTPDDALEALETGADLVAIGRGLLV--DPD 321 (353)
T ss_pred ------cc-----------CCcchHHHHHHHHHHhCCCCCEE--EECCCCCHHHHHHHHHcCCChHHHhHHHHh--Ccc
Confidence 00 0011233444455443 78998 679999999999999889999999999998 564
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-07 Score=92.29 Aligned_cols=128 Identities=15% Similarity=0.174 Sum_probs=87.7
Q ss_pred HHHHHHHHHcCCCEEEe--CCCCC--chhHHHHHHhcCCC-CcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHH
Q 021609 104 FVEAQILEAIGIDYVDE--SEVLT--PADEENHINKHNFR-IPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~--~~~~~--~~~~~~~i~~~~~~-i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
.+.++.+.++|+|.+.. ++.-+ ..+.++.+++..++ +.++++ +-|.+.++.+.++|+|+|.+....+ .+|++
T Consensus 244 ~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~G--s~c~t 321 (502)
T PRK07107 244 AERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGG--SICIT 321 (502)
T ss_pred HHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCC--cCccc
Confidence 47788999999999953 22222 24556666654333 666665 7899999999999999998853332 33321
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhc---------CCCCEEEeCCCCCCCHHHHHHHHHcCCC
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQL---------GRLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~---------~~iPVi~iA~GGI~t~~d~~~~l~~Gad 247 (310)
|... +. .+.+..+.++.+. .++||| +.|||++..|+.+++.+|||
T Consensus 322 -----------r~~~------------~~g~~~~~ai~~~~~a~~~~~~~~g~~~~vi--adgGir~~gdi~KAla~GA~ 376 (502)
T PRK07107 322 -----------REQK------------GIGRGQATALIEVAKARDEYFEETGVYIPIC--SDGGIVYDYHMTLALAMGAD 376 (502)
T ss_pred -----------cccc------------CCCccHHHHHHHHHHHHHHHHhhcCCcceEE--EcCCCCchhHHHHHHHcCCC
Confidence 1111 12 2224444444332 138998 88999999999999999999
Q ss_pred EEEEccccccC
Q 021609 248 GVFVGSGVFKS 258 (310)
Q Consensus 248 gV~VGsai~~a 258 (310)
+||+|+.|..+
T Consensus 377 ~vm~G~~~ag~ 387 (502)
T PRK07107 377 FIMLGRYFARF 387 (502)
T ss_pred eeeeChhhhcc
Confidence 99999999874
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-07 Score=89.32 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=85.6
Q ss_pred CCc-EEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIP-FVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~-~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
+.+ ++-++.+.++++++.+.|+|.|.+.+.+++.. . ...++.+.+.++.
T Consensus 245 ~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~~------------------d------------~~~~t~~~L~~i~ 294 (381)
T PRK11197 245 DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQL------------------D------------GVLSSARALPAIA 294 (381)
T ss_pred CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCCC------------------C------------CcccHHHHHHHHH
Confidence 444 45568999999999999999999988755320 0 1123345555554
Q ss_pred hc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcc
Q 021609 218 QL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGL 295 (310)
Q Consensus 218 ~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 295 (310)
+. .++||+ ++|||++..|+.+++.+||++|++|+.++.. .+..=.+.+ .+.+..+.+++...|..+
T Consensus 295 ~a~~~~~~vi--~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~-----la~~G~~gv-----~~~l~~l~~El~~~m~l~ 362 (381)
T PRK11197 295 DAVKGDITIL--ADSGIRNGLDVVRMIALGADTVLLGRAFVYA-----LAAAGQAGV-----ANLLDLIEKEMRVAMTLT 362 (381)
T ss_pred HHhcCCCeEE--eeCCcCcHHHHHHHHHcCcCceeEhHHHHHH-----HHhccHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 43 368998 7999999999999999999999999998851 111111111 234567778888888888
Q ss_pred cCccch
Q 021609 296 NLSDHK 301 (310)
Q Consensus 296 ~~~~~~ 301 (310)
|.++++
T Consensus 363 G~~~i~ 368 (381)
T PRK11197 363 GAKSIS 368 (381)
T ss_pred CCCCHH
Confidence 877764
|
|
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.4e-09 Score=96.24 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=48.1
Q ss_pred HHHHHHHhhcCC--CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 210 YDLVMQTKQLGR--LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 210 ~~~i~~i~~~~~--iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
+.++.++++..+ +||+ +.|||.|++|+.+++.+||+.|+++|+++. .+| ...+++.+.+++|
T Consensus 231 L~~V~~~~~~~~~~i~Ii--g~GGI~s~~da~e~l~aGA~~Vqv~Sal~~-~Gp-~~~~~i~~~L~~~ 294 (295)
T PF01180_consen 231 LRWVRELRKALGQDIPII--GVGGIHSGEDAIEFLMAGASAVQVCSALIY-RGP-GVIRRINRELEEW 294 (295)
T ss_dssp HHHHHHHHHHTTTSSEEE--EESS--SHHHHHHHHHHTESEEEESHHHHH-HGT-THHHHHHHHHHHH
T ss_pred HHHHHHHHhccccceEEE--EeCCcCCHHHHHHHHHhCCCHheechhhhh-cCc-HHHHHHHHHHHhh
Confidence 456666766655 9998 789999999999999999999999999965 255 4566688877765
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-07 Score=78.59 Aligned_cols=180 Identities=19% Similarity=0.242 Sum_probs=113.0
Q ss_pred HHHHHHHHcCCcEEEecc-----C---Cccccccc-----CCCCCCCCHHHHHHHHhh-cCcceeeccccC------cHH
Q 021609 46 EQARVAEEAGACAVMALE-----R---VPADIRSQ-----GGVARMSDPQLIKEIKQS-VTIPVMAKARIG------HFV 105 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-----~---~~~~~~~~-----~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~------~~~ 105 (310)
..-+-+.+.|++.| +|. | -|+....+ .|..+-...+.+++.+.. +.+|++....++ ...
T Consensus 36 kilkglq~gG~dII-ELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~ 114 (268)
T KOG4175|consen 36 KILKGLQSGGSDII-ELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVEN 114 (268)
T ss_pred HHHHHHhcCCcCeE-EecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHH
Confidence 44555677888854 764 1 23322221 233332333455555544 789999875543 345
Q ss_pred HHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHHHH-HhCCCEEEEcCCCC-CcchHHHHHHH
Q 021609 106 EAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGEALRRI-REGAAMIRTKGEAG-TGNIIEAVRHV 181 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~-~~Gad~V~v~g~~~-~~~~~~~~~~~ 181 (310)
.++.+.++||+++++.+.. +...+++.+++++..+..++...|.++...+. +.--.+|.+-.+.+ +|. .+.+
T Consensus 115 ~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvVSrmG~TG~-~~sv--- 190 (268)
T KOG4175|consen 115 YIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVVSRMGVTGT-RESV--- 190 (268)
T ss_pred HHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEEEecccccc-HHHH---
Confidence 6789999999999877742 24456777877888877777777776666654 33223554443432 331 0000
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
. ..-..+++++++.. +.|+. ...||++++++.+.-.. +|||+|||.+.+
T Consensus 191 -------------n-----------~~l~~L~qrvrk~t~dtPlA--VGFGvst~EHf~qVgsv-aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 191 -------------N-----------EKLQSLLQRVRKATGDTPLA--VGFGVSTPEHFKQVGSV-ADGVVVGSKIVK 240 (268)
T ss_pred -------------H-----------HHHHHHHHHHHHhcCCCcee--EeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence 0 01145778888875 78998 57899999999988777 999999998874
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.5e-06 Score=77.10 Aligned_cols=183 Identities=14% Similarity=0.197 Sum_probs=114.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeecccc-CcHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARI-GHFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~-~~~~~a~~~~~aG 114 (310)
++.+.+. .+++++.+..-|+++.+. ..+..+|. ......++.+++..+ +||.+..-- ...+.++.+.+.|
T Consensus 22 n~~n~e~~~avi~aAe~~~~PvIl~~~~~--~~~~~~~~--~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~G 97 (282)
T TIGR01859 22 NFNNLEWTQAILEAAEEENSPVIIQVSEG--AIKYMGGY--KMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAG 97 (282)
T ss_pred EECCHHHHHHHHHHHHHhCCCEEEEcCcc--hhhccCcH--HHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcC
Confidence 4455654 445566777766565311 11211111 112345666677777 999987432 3567888999999
Q ss_pred CCEEE-eCCCCCch-------hHHHHHHhcCCCCc-------------EE--EecCCHHHHHHHHH-hCCCEEEEc-CCC
Q 021609 115 IDYVD-ESEVLTPA-------DEENHINKHNFRIP-------------FV--CGCRNLGEALRRIR-EGAAMIRTK-GEA 169 (310)
Q Consensus 115 ad~Vi-~~~~~~~~-------~~~~~i~~~~~~i~-------------~~--v~~~t~~ea~~~~~-~Gad~V~v~-g~~ 169 (310)
++.|- -...++.. ++.++.+..+..+. +. .+.++++++....+ .|+|++.+. |..
T Consensus 98 f~sVmid~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~ 177 (282)
T TIGR01859 98 FSSVMIDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTS 177 (282)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCcc
Confidence 99994 22223333 22333333222111 01 34779999999886 899999864 331
Q ss_pred CCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 170 GTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
.. .++ +...-+++.++++++..++|++++.+.|| +.+++.+++++|+++|
T Consensus 178 hg------------------~~~-----------~~~~l~~e~L~~i~~~~~iPlv~hGgSGi-~~e~i~~~i~~Gi~ki 227 (282)
T TIGR01859 178 HG------------------KYK-----------GEPGLDFERLKEIKELTNIPLVLHGASGI-PEEQIKKAIKLGIAKI 227 (282)
T ss_pred cc------------------ccC-----------CCCccCHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHcCCCEE
Confidence 10 000 01223478899999888999997733399 6899999999999999
Q ss_pred EEcccccc
Q 021609 250 FVGSGVFK 257 (310)
Q Consensus 250 ~VGsai~~ 257 (310)
-++|.+..
T Consensus 228 Nv~T~l~~ 235 (282)
T TIGR01859 228 NIDTDCRI 235 (282)
T ss_pred EECcHHHH
Confidence 99999875
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-06 Score=75.13 Aligned_cols=161 Identities=12% Similarity=0.153 Sum_probs=94.3
Q ss_pred HHHHHHHHhh-cCcceeeccccCc--HHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-cCCCCcEEEecC---CHHHHH
Q 021609 81 PQLIKEIKQS-VTIPVMAKARIGH--FVEAQILEAIGIDYVDESEVLTPADEENHINK-HNFRIPFVCGCR---NLGEAL 153 (310)
Q Consensus 81 ~~~i~~i~~~-~~iPv~vk~~~~~--~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~~~~i~~~v~~~---t~~ea~ 153 (310)
+..++++++. .+.|+.+...+.+ ...++.+.++|+|.+..+..-....+...++. ...+..++++.. +.+++.
T Consensus 44 ~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~ 123 (216)
T PRK13306 44 MKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQ 123 (216)
T ss_pred HHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHH
Confidence 6788899887 5888888765432 23334578999999964432233333333332 223444555533 334443
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc--HHHHHHHhhcCCCCEEEeCCCC
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP--YDLVMQTKQLGRLPVVHFAAGG 231 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~--~~~i~~i~~~~~iPVi~iA~GG 231 (310)
...+.+.+.+.+|-... +.+ + -....+ .+.++++++. +..+. ..||
T Consensus 124 ~~~~~~~~~~vl~~a~~---------------------~~~--~------G~v~s~~~~~~ir~~~~~-~~~i~--V~gG 171 (216)
T PRK13306 124 QWRDAGISQVIYHRSRD---------------------AQL--A------GVAWGEKDLNKVKKLSDM-GFKVS--VTGG 171 (216)
T ss_pred HHHcCChhhhhhhhhhh---------------------hhh--c------CCCCCHHHHHHHHHHhcC-CCeEE--EcCC
Confidence 33344443333321100 000 0 001222 2344444431 22244 4799
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 232 VATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 232 I~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
| +++.+....+.|+|.+++||+|++++||...++++.+.+++
T Consensus 172 I-~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~~i~~ 213 (216)
T PRK13306 172 L-VVEDLKLFKGIPVKTFIAGRAIRGAADPAAAARAFKDEIAK 213 (216)
T ss_pred C-CHhhHHHHhcCCCCEEEECCcccCCCCHHHHHHHHHHHHHh
Confidence 9 58888887888999999999999999999999999998864
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.1e-06 Score=76.62 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=123.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
++.+.+. .+++++.+..-|+++.+. ..+..+|. ......++.+.+.. ++||.+.+--+..+.++.+.+.|
T Consensus 24 N~~n~e~~~avi~aAe~~~sPvIlq~s~~--~~~~~~~~--~~~~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~G 99 (293)
T PRK07315 24 NTNNLEWTQAILRAAEAKKAPVLIQTSMG--AAKYMGGY--KVCKNLIENLVESMGITVPVAIHLDHGHYEDALECIEVG 99 (293)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcc--HHhhcCcH--HHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcC
Confidence 4455654 445566777766666311 11111111 01134555566666 78999975444567889999999
Q ss_pred CCEE-EeCCCCCchh-------HHHHHHhcCC------C-------CcEEEec-CCHHHHHHHHHhCCCEEEEc-CCCCC
Q 021609 115 IDYV-DESEVLTPAD-------EENHINKHNF------R-------IPFVCGC-RNLGEALRRIREGAAMIRTK-GEAGT 171 (310)
Q Consensus 115 ad~V-i~~~~~~~~~-------~~~~i~~~~~------~-------i~~~v~~-~t~~ea~~~~~~Gad~V~v~-g~~~~ 171 (310)
++.| +-...++..+ +.++...++. + ..+..++ ++++++.+..+.|+|++.+. |...
T Consensus 100 ftSVm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vH- 178 (293)
T PRK07315 100 YTSIMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIH- 178 (293)
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeecccccc-
Confidence 9999 4222233332 2333332211 1 1123344 89999999889999999875 1210
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
..+++.+ ..-.++.++++++.. ++|++++.+.|| +.+++.++++.|++.|-
T Consensus 179 -----------------G~y~t~~----------k~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiN 230 (293)
T PRK07315 179 -----------------GPYPENW----------EGLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQEAIKLGVAKVN 230 (293)
T ss_pred -----------------ccCCCCC----------CcCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHHHHHcCCCEEE
Confidence 0111111 123478899998887 599997744449 69999999999999999
Q ss_pred EccccccCCCHHHHHHHHHHHH
Q 021609 251 VGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 251 VGsai~~a~dp~~~a~~l~~~i 272 (310)
++|.+.. ++...++++++..
T Consensus 231 v~T~i~~--~~~~~~~~~~~~~ 250 (293)
T PRK07315 231 VNTECQI--AFANATRKFARDY 250 (293)
T ss_pred EccHHHH--HHHHHHHHHHHhc
Confidence 9999997 7777777776654
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-06 Score=83.07 Aligned_cols=131 Identities=20% Similarity=0.254 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCCEEE--eCCC--CCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHH
Q 021609 105 VEAQILEAIGIDYVD--ESEV--LTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVR 179 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi--~~~~--~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~ 179 (310)
+....+.++|+|.|+ .+.. .-..+.++++++..+.+.++.+ +-|.+.+..++++|+|.+.+. .++|.+|.+-
T Consensus 254 ~rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVG--MGsGSiCiTq- 330 (503)
T KOG2550|consen 254 ERLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVG--MGSGSICITQ- 330 (503)
T ss_pred HHHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEec--cccCceeeec-
Confidence 445677889999996 3333 2355778888888888887776 778899999999999999874 2344544210
Q ss_pred HHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
-+..+.+. ...+..+ ..+......+|+| |.|||+++.++.+++.+||+.||+|+-+...
T Consensus 331 ----------evma~Grp-------Q~TAVy~-va~~A~q~gvpvi--ADGGiq~~Ghi~KAl~lGAstVMmG~lLAgt 389 (503)
T KOG2550|consen 331 ----------KVMACGRP-------QGTAVYK-VAEFANQFGVPCI--ADGGIQNVGHVVKALGLGASTVMMGGLLAGT 389 (503)
T ss_pred ----------eeeeccCC-------cccchhh-HHHHHHhcCCcee--ecCCcCccchhHhhhhcCchhheecceeeee
Confidence 00011100 0111122 2233334679998 8999999999999999999999999988874
|
|
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-06 Score=81.92 Aligned_cols=149 Identities=19% Similarity=0.160 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCC--CC-CHHHHHHHHhhcCc-ceeeccccCcHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSVTI-PVMAKARIGHFVEAQ 108 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~~i-Pv~vk~~~~~~~~a~ 108 (310)
+.|+.+.++|+|+| +|+ | .++..+++||+-. ++ ..+.++.||++++. ||.++.....+.
T Consensus 156 ~aA~~a~~aGfDgV-eih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~--- 231 (338)
T cd02933 156 QAARNAIEAGFDGV-EIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTF--- 231 (338)
T ss_pred HHHHHHHHcCCCEE-EEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccC---
Confidence 36888899999998 654 2 4566667777731 22 23567777877754 777665432100
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccce
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
.| .....+..+..+ -++.+.+.|+|++.+..+.....
T Consensus 232 ----~~-----~~~~~~~ee~~~-------------------~~~~l~~~g~d~i~vs~g~~~~~--------------- 268 (338)
T cd02933 232 ----ND-----MGDSDPEATFSY-------------------LAKELNKRGLAYLHLVEPRVAGN--------------- 268 (338)
T ss_pred ----CC-----CCCCCCHHHHHH-------------------HHHHHHHcCCcEEEEecCCCCCc---------------
Confidence 00 000011122211 23445567999998843321110
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
.....+++.+.+++..++||+ +.|||. ++++.++++.| ||.|.+|++++. ||.
T Consensus 269 ----------------~~~~~~~~~~~ik~~~~ipvi--~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la--dP~ 322 (338)
T cd02933 269 ----------------PEDQPPDFLDFLRKAFKGPLI--AAGGYD-AESAEAALADGKADLVAFGRPFIA--NPD 322 (338)
T ss_pred ----------------ccccchHHHHHHHHHcCCCEE--EECCCC-HHHHHHHHHcCCCCEEEeCHhhhh--CcC
Confidence 012346677788888899998 679996 99999999875 999999999997 775
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-06 Score=74.53 Aligned_cols=60 Identities=32% Similarity=0.563 Sum_probs=50.8
Q ss_pred CcHHHHHHHhhcCCC-CEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRL-PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 208 ~~~~~i~~i~~~~~i-PVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
.+.+.++.+++..+. |++ .+|||++++++.+++..|||+|+|||++.+ ||.++.+++++.
T Consensus 170 ~~~e~I~~v~~~~~~~pvi--vGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~ 230 (232)
T PRK04169 170 VPPEMVKAVKKALDITPLI--YGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKA 230 (232)
T ss_pred CCHHHHHHHHHhcCCCcEE--EECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhh
Confidence 447889999988887 998 689999999999999999999999999996 777555555544
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-06 Score=78.10 Aligned_cols=69 Identities=23% Similarity=0.301 Sum_probs=52.3
Q ss_pred HHHhhcCCCCEEEeCCCCCCC-HH----HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhh
Q 021609 214 MQTKQLGRLPVVHFAAGGVAT-PA----DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEV 284 (310)
Q Consensus 214 ~~i~~~~~iPVi~iA~GGI~t-~~----d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~ 284 (310)
+++.+...+||++ +||=+. .+ .+..+++.||.|+.+||-+++++||..+++.+...+++....+...++
T Consensus 185 ~~vv~a~~vPVvi--aGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~~~s~~eA~~~ 258 (264)
T PRK08227 185 ERITAGCPVPIVI--AGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHENETAKEAYEL 258 (264)
T ss_pred HHHHHcCCCcEEE--eCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3344456789983 566553 33 355566789999999999999999999999999999988876654333
|
|
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.9e-06 Score=83.05 Aligned_cols=176 Identities=19% Similarity=0.223 Sum_probs=101.4
Q ss_pred HHHHHHHHcCCcEEEecc-------------C-CcccccccCCCCC--CC-CHHHHHHHHhhc--CcceeeccccCcHHH
Q 021609 46 EQARVAEEAGACAVMALE-------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSV--TIPVMAKARIGHFVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~--~iPv~vk~~~~~~~~ 106 (310)
+.|+.+.++|+|+| +|+ | .+...+++||+-. ++ ..+.+++|++++ +.||.++..... .
T Consensus 154 ~AA~ra~~AGfDgV-Eih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~--~ 230 (382)
T cd02931 154 ESAVIAKEAGFDGV-EIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKS--Y 230 (382)
T ss_pred HHHHHHHHcCCCEE-EEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechh--h
Confidence 36888899999998 443 1 3455566666531 22 236777788877 578888765321 0
Q ss_pred HHHHHH---cCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHh
Q 021609 107 AQILEA---IGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRS 183 (310)
Q Consensus 107 a~~~~~---aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~ 183 (310)
...... .+.+.. ...+++.+.. +-++.+.+.|+|+|.+++..+.....
T Consensus 231 ~~~~~~~~~~~~~~~--~~g~~~e~~~-------------------~~~~~l~~~gvD~l~vs~g~~~~~~~-------- 281 (382)
T cd02931 231 IKDLRQGALPGEEFQ--EKGRDLEEGL-------------------KAAKILEEAGYDALDVDAGSYDAWYW-------- 281 (382)
T ss_pred ccccccccccccccc--cCCCCHHHHH-------------------HHHHHHHHhCCCEEEeCCCCCccccc--------
Confidence 000000 000000 0011112111 12334556799999998654211000
Q ss_pred hccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 184 VMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 184 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..+.. + ......+++.+.+++.+++||+ +.|||.+++++.++++.| ||.|++|++++. ||.
T Consensus 282 ------~~~~~-------~-~~~~~~~~~~~~ik~~~~~pvi--~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la--dP~ 343 (382)
T cd02931 282 ------NHPPM-------Y-QKKGMYLPYCKALKEVVDVPVI--MAGRMEDPELASEAINEGIADMISLGRPLLA--DPD 343 (382)
T ss_pred ------ccCCc-------c-CCcchhHHHHHHHHHHCCCCEE--EeCCCCCHHHHHHHHHcCCCCeeeechHhHh--Ccc
Confidence 00000 0 0011124567778888899998 789999999999999865 999999999998 776
Q ss_pred HHHHHHHHHHhccC
Q 021609 263 KRAQAIVRAVTHYS 276 (310)
Q Consensus 263 ~~a~~l~~~i~~~~ 276 (310)
|.+.+.++.
T Consensus 344 -----l~~k~~~g~ 352 (382)
T cd02931 344 -----VVNKIRRGR 352 (382)
T ss_pred -----HHHHHHcCC
Confidence 455555554
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.1e-06 Score=77.10 Aligned_cols=171 Identities=20% Similarity=0.316 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCcEE-Eec-c--CCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-CcHHHHHHHHHcCCCEEE-
Q 021609 46 EQARVAEEAGACAV-MAL-E--RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-GHFVEAQILEAIGIDYVD- 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~--~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-~~~~~a~~~~~aGad~Vi- 119 (310)
+.++.++++|++++ +|+ + -+|.. .++ ++.++.+++.+++|+-+.+-. +....++.+.++|+|.|.
T Consensus 16 ~~i~~l~~~g~d~lHiDiMDg~fvpn~--~~g-------~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~ 86 (201)
T PF00834_consen 16 EEIKRLEEAGADWLHIDIMDGHFVPNL--TFG-------PDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITF 86 (201)
T ss_dssp HHHHHHHHTT-SEEEEEEEBSSSSSSB---B--------HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHcCCCEEEEeecccccCCcc--cCC-------HHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEE
Confidence 67889999999998 443 1 12211 122 789999999999999887544 345677889999999995
Q ss_pred eCCC-CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 120 ESEV-LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 120 ~~~~-~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
.... ..+.+..+.+++.+...-+.+...|.-+...-.-.-+|+|.+.. ++++|-..
T Consensus 87 H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f--------------------- 145 (201)
T PF00834_consen 87 HAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKF--------------------- 145 (201)
T ss_dssp EGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB-----------------------
T ss_pred cccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccc---------------------
Confidence 2233 24556677776654433334444454332221112467665443 22222100
Q ss_pred hHHHHhhhccCCcHHHHHHHhhc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
....++-++++++. .++.+. ..||| +.+++.++.++|+|.+++||+++++
T Consensus 146 ---------~~~~~~KI~~l~~~~~~~~~~~~I~--vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~ 200 (201)
T PF00834_consen 146 ---------IPEVLEKIRELRKLIPENGLDFEIE--VDGGI-NEENIKQLVEAGADIFVAGSAIFKA 200 (201)
T ss_dssp ---------HGGHHHHHHHHHHHHHHHTCGSEEE--EESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred ---------cHHHHHHHHHHHHHHHhcCCceEEE--EECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence 01112222222221 346666 57999 6899999999999999999999974
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.1e-06 Score=80.27 Aligned_cols=159 Identities=18% Similarity=0.214 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCC--CC-CHHHHHHHHhhc--CcceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVAR--MS-DPQLIKEIKQSV--TIPVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~--~~-~~~~i~~i~~~~--~iPv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| +|+ |. +...+.+||+-. ++ ..+.+++||+++ ++||.++.... +.
T Consensus 153 ~aA~ra~~aGfDgV-eih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~--~~- 228 (338)
T cd04733 153 HAARLAQEAGFDGV-QIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSA--DF- 228 (338)
T ss_pred HHHHHHHHcCCCEE-EEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHH--Hc-
Confidence 46888899999997 664 22 344455666621 11 225677778877 47788775421 10
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
.. ...++.+.. +-+..+.+.|+|++.++++.+.....
T Consensus 229 ---~~---------~g~~~eea~-------------------~ia~~Le~~Gvd~iev~~g~~~~~~~------------ 265 (338)
T cd04733 229 ---QR---------GGFTEEDAL-------------------EVVEALEEAGVDLVELSGGTYESPAM------------ 265 (338)
T ss_pred ---CC---------CCCCHHHHH-------------------HHHHHHHHcCCCEEEecCCCCCCccc------------
Confidence 00 001111111 12334556789999888754321100
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
....... . .......++..+++++.+++||+ +.|+|.+++++.++++.| ||.|.+|++++. ||.
T Consensus 266 -~~~~~~~---~---~~~~~~~~~~~~~ik~~v~iPVi--~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia--dP~ 330 (338)
T cd04733 266 -AGAKKES---T---IAREAYFLEFAEKIRKVTKTPLM--VTGGFRTRAAMEQALASGAVDGIGLARPLAL--EPD 330 (338)
T ss_pred -cccccCC---c---cccchhhHHHHHHHHHHcCCCEE--EeCCCCCHHHHHHHHHcCCCCeeeeChHhhh--Ccc
Confidence 0000000 0 00011125677788888899998 689999999999999876 999999999997 776
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.2e-06 Score=72.79 Aligned_cols=51 Identities=29% Similarity=0.500 Sum_probs=45.6
Q ss_pred CcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
.+.+.++.+++.. ++|++ .+|||+|++++.+++++|||+|++||++++ ||.
T Consensus 161 ~~~e~I~~v~~~~~~~pl~--vGGGIrs~e~a~~l~~aGAD~VVVGsai~~--~p~ 212 (219)
T cd02812 161 GPPEVVRAVKKVLGDTPLI--VGGGIRSGEQAKEMAEAGADTIVVGNIVEE--DPN 212 (219)
T ss_pred CCHHHHHHHHHhcCCCCEE--EeCCCCCHHHHHHHHHcCCCEEEECchhhC--CHH
Confidence 4578899998877 89998 589999999999999999999999999997 564
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.7e-06 Score=79.59 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCCCCC----HHHHHHHHhhc--CcceeeccccCcHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVARMSD----PQLIKEIKQSV--TIPVMAKARIGHFVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~~~~----~~~i~~i~~~~--~iPv~vk~~~~~~~~ 106 (310)
+.|+.+.++|+|+| +|+ | .+...+.+||+ +... .+.++.+++.+ +.||.++.....+.
T Consensus 158 ~aA~~a~~aGfDgV-ei~~~~gyLl~qFlsp~~N~R~D~yGgs-l~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~- 234 (336)
T cd02932 158 AAARRAVEAGFDVI-EIHAAHGYLLHQFLSPLSNKRTDEYGGS-LENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV- 234 (336)
T ss_pred HHHHHHHHcCCCEE-EEccccccHHHHhcCCccCCCCcccCCC-HHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC-
Confidence 35888899999997 665 2 23333444554 2222 35667778887 78888876532100
Q ss_pred HHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 107 AQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
....++.+..+ -+..+.+.|+|++.++.+..+..
T Consensus 235 --------------~~g~~~~e~~~-------------------ia~~Le~~gvd~iev~~g~~~~~------------- 268 (336)
T cd02932 235 --------------EGGWDLEDSVE-------------------LAKALKELGVDLIDVSSGGNSPA------------- 268 (336)
T ss_pred --------------CCCCCHHHHHH-------------------HHHHHHHcCCCEEEECCCCCCcc-------------
Confidence 00011111111 13344567899998875433211
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..... ......+..+++++.+++||+ +.|||.+++++.++++.| +|.|++|++++. ||.
T Consensus 269 ---~~~~~----------~~~~~~~~~~~ir~~~~iPVi--~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~--dP~ 328 (336)
T cd02932 269 ---QKIPV----------GPGYQVPFAERIRQEAGIPVI--AVGLITDPEQAEAILESGRADLVALGRELLR--NPY 328 (336)
T ss_pred ---cccCC----------CccccHHHHHHHHhhCCCCEE--EeCCCCCHHHHHHHHHcCCCCeehhhHHHHh--Ccc
Confidence 00000 011124677788888899998 789999999999999887 999999999998 665
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-05 Score=72.99 Aligned_cols=181 Identities=27% Similarity=0.352 Sum_probs=108.2
Q ss_pred ccccCCCHH-HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccC--------c---
Q 021609 38 VIMDVVTPE-QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIG--------H--- 103 (310)
Q Consensus 38 ~i~~~~~~~-~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~--------~--- 103 (310)
++...-|++ .++.+.++|++++ .. . +-.++.....+ ++|++++..-. +
T Consensus 38 p~~gl~d~e~~v~~v~~~g~dav-~~--------~---------~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~ 99 (265)
T COG1830 38 PIEGLEDPENIVAKVAEAGADAV-AM--------T---------PGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVL 99 (265)
T ss_pred CcccccCHHHHHHHHHhcCCCEE-Ee--------c---------HhHHhhcCccccCCcCEEEEeccccccCCCccccee
Confidence 555667775 5667788999987 22 0 22344443332 68888863211 1
Q ss_pred HHHHHHHHHcCCCEEE-----eCCC--CCchhHHHHHHh-cCCCCcEEEe-------c-----CCHH---H-HHHHHHhC
Q 021609 104 FVEAQILEAIGIDYVD-----ESEV--LTPADEENHINK-HNFRIPFVCG-------C-----RNLG---E-ALRRIREG 159 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi-----~~~~--~~~~~~~~~i~~-~~~~i~~~v~-------~-----~t~~---e-a~~~~~~G 159 (310)
.-.++.+...|+|+|- ++.. ....++.+.... +..+++.++- . .+.+ . ++.+.++|
T Consensus 100 ~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelG 179 (265)
T COG1830 100 VATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELG 179 (265)
T ss_pred eeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhc
Confidence 2346778899999993 2221 112233333333 4567766652 1 1111 1 22356789
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCC--HH-
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVAT--PA- 236 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t--~~- 236 (310)
+|+|++. + +++ .+..+++.+...+||+ .+||=++ .+
T Consensus 180 ADIiK~~-y--tg~------------------------------------~e~F~~vv~~~~vpVv--iaGG~k~~~~~~ 218 (265)
T COG1830 180 ADIIKTK-Y--TGD------------------------------------PESFRRVVAACGVPVV--IAGGPKTETERE 218 (265)
T ss_pred CCeEeec-C--CCC------------------------------------hHHHHHHHHhCCCCEE--EeCCCCCCChHH
Confidence 9999875 2 221 1122333333458998 4677666 22
Q ss_pred ---HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 237 ---DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 237 ---d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
-...+++.|+.|+.+||-|+++++|..+.+.+...+.+...
T Consensus 219 ~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe~~~ 262 (265)
T COG1830 219 FLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHENAS 262 (265)
T ss_pred HHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcCCCC
Confidence 24455678999999999999999999988877777766544
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-05 Score=73.50 Aligned_cols=188 Identities=20% Similarity=0.194 Sum_probs=110.4
Q ss_pred cccCCCHH-HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccC--------------
Q 021609 39 IMDVVTPE-QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIG-------------- 102 (310)
Q Consensus 39 i~~~~~~~-~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~-------------- 102 (310)
+....+++ ..+.+.++|++++ .+. .-.++..... .++|++++..-+
T Consensus 55 ~~gl~dp~~~i~~~~~~g~dav-~~~-----------------~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~ 116 (304)
T PRK06852 55 AKDDADPEHLFRIASKAKIGVF-ATQ-----------------LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSR 116 (304)
T ss_pred CcccCCHHHHHHHHHhcCCCEE-EeC-----------------HHHHHhhccccCCCcEEEEECCCCCcCCcccCCcccc
Confidence 55667775 6777788999997 331 1233332211 367777763211
Q ss_pred cHHHHHHHHHcC------CCEEEeC----CCCC---chhHHHHHHh-cCCCCcEEEe--cC--------C---HHH-HHH
Q 021609 103 HFVEAQILEAIG------IDYVDES----EVLT---PADEENHINK-HNFRIPFVCG--CR--------N---LGE-ALR 154 (310)
Q Consensus 103 ~~~~a~~~~~aG------ad~Vi~~----~~~~---~~~~~~~i~~-~~~~i~~~v~--~~--------t---~~e-a~~ 154 (310)
.+-.++.+.+.| ||+|..+ +..+ ..++.+...+ +..++++++- .. + ... ++.
T Consensus 117 l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRi 196 (304)
T PRK06852 117 QLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGV 196 (304)
T ss_pred ceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHH
Confidence 122367788888 8888311 1112 2233333333 4567776641 11 1 122 333
Q ss_pred HHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCC
Q 021609 155 RIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVA 233 (310)
Q Consensus 155 ~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~ 233 (310)
+.++|||+|++.-.+. ....+.+..+++.+.. ++||++ +||=+
T Consensus 197 aaELGADIVKv~y~~~----------------------------------~~~g~~e~f~~vv~~~g~vpVvi--aGG~k 240 (304)
T PRK06852 197 AACLGADFVKVNYPKK----------------------------------EGANPAELFKEAVLAAGRTKVVC--AGGSS 240 (304)
T ss_pred HHHHcCCEEEecCCCc----------------------------------CCCCCHHHHHHHHHhCCCCcEEE--eCCCC
Confidence 5689999999863210 0011122333444444 789883 56655
Q ss_pred -CHHH----HHHHHH-cCCCEEEEccccccCCCH--HHHHHHHHHHHhccCChhh
Q 021609 234 -TPAD----AAMMMQ-LGCDGVFVGSGVFKSGDP--VKRAQAIVRAVTHYSDPEV 280 (310)
Q Consensus 234 -t~~d----~~~~l~-~GadgV~VGsai~~a~dp--~~~a~~l~~~i~~~~~~~~ 280 (310)
+.++ +..+++ .|+.|+++||-++++++| ..+++.+...+++....+.
T Consensus 241 ~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~~~s~~e 295 (304)
T PRK06852 241 TDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITVEDKSVEE 295 (304)
T ss_pred CCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHhCCCCHHH
Confidence 3333 455556 899999999999999999 8888989988887776554
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-06 Score=81.39 Aligned_cols=58 Identities=22% Similarity=0.244 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.+..+++++.+++||+ +.|++.+++++.++++.| +|.|++|++++. ||. |.+.+.++.
T Consensus 265 ~~~~~~ik~~v~iPVi--~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~--dP~-----~~~k~~~g~ 323 (353)
T cd02930 265 AWATAKLKRAVDIPVI--ASNRINTPEVAERLLADGDADMVSMARPFLA--DPD-----FVAKAAAGR 323 (353)
T ss_pred HHHHHHHHHhCCCCEE--EcCCCCCHHHHHHHHHCCCCChhHhhHHHHH--Ccc-----HHHHHHhCC
Confidence 4566788888899998 789999999999999865 999999999997 776 445555554
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.7e-06 Score=82.26 Aligned_cols=104 Identities=23% Similarity=0.325 Sum_probs=64.3
Q ss_pred HHHHHHhcCCCCcEEEec---CCHHHHHHHHHhC-CCEEEEcCCCC-CcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 129 EENHINKHNFRIPFVCGC---RNLGEALRRIREG-AAMIRTKGEAG-TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 129 ~~~~i~~~~~~i~~~v~~---~t~~ea~~~~~~G-ad~V~v~g~~~-~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
+++.+++...+.++++-. .+.+++.++.+.+ +|+|.+.|..+ ++.. ......
T Consensus 204 ~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~---------------~~~~~~-------- 260 (392)
T cd02808 204 LIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAA---------------PLTFID-------- 260 (392)
T ss_pred HHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCC---------------cccccc--------
Confidence 344444433324554431 2567777777665 99999988744 3310 000000
Q ss_pred hcc-CCcHHHHHHHhhc-------CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 204 KKI-AAPYDLVMQTKQL-------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 204 ~~~-~~~~~~i~~i~~~-------~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+. .+....+.++.+. .++||+ ++|||+++.|+.+++.+|||+|.+|++++.+
T Consensus 261 -~~g~pt~~~L~~v~~~~~~~~~~~~i~vi--asGGI~~g~Dv~kalaLGAd~V~ig~~~l~a 320 (392)
T cd02808 261 -HVGLPTELGLARAHQALVKNGLRDRVSLI--ASGGLRTGADVAKALALGADAVGIGTAALIA 320 (392)
T ss_pred -cCCccHHHHHHHHHHHHHHcCCCCCCeEE--EECCCCCHHHHHHHHHcCCCeeeechHHHHh
Confidence 01 1222333333321 368998 7899999999999999999999999999954
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=79.72 Aligned_cols=94 Identities=26% Similarity=0.445 Sum_probs=70.6
Q ss_pred HHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc
Q 021609 131 NHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 209 (310)
Q Consensus 131 ~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~ 209 (310)
++++.. -.+|+++ ++-+.+||+.|.+.|++.|.|.++++.. +. ...++
T Consensus 216 ~wLr~~-T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGgRQ------------------lD------------~vpAt 264 (363)
T KOG0538|consen 216 KWLRSI-TKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGGRQ------------------LD------------YVPAT 264 (363)
T ss_pred HHHHhc-CcCCeEEEeecccHHHHHHHHhCCceEEEeCCCccc------------------cC------------cccch
Confidence 444432 3566555 6899999999999999998888775411 11 12445
Q ss_pred HHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 210 YDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 210 ~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
++.+.++.+. .++||. ..|||++..|+.+++.+||.+|.+|+.++=
T Consensus 265 I~~L~Evv~aV~~ri~V~--lDGGVR~G~DVlKALALGAk~VfiGRP~v~ 312 (363)
T KOG0538|consen 265 IEALPEVVKAVEGRIPVF--LDGGVRRGTDVLKALALGAKGVFIGRPIVW 312 (363)
T ss_pred HHHHHHHHHHhcCceEEE--EecCcccchHHHHHHhcccceEEecCchhe
Confidence 6666666554 369998 579999999999999999999999998873
|
|
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.8e-06 Score=77.76 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
++..+.+++.+++||+ +.|||.+++++.++++.| ||.|++|++++. ||. |.+.++++.
T Consensus 278 ~~~~~~ik~~~~~pvi--~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la--dP~-----l~~k~~~g~ 336 (370)
T cd02929 278 EPYIKFVKQVTSKPVV--GVGRFTSPDKMVEVVKSGILDLIGAARPSIA--DPF-----LPKKIREGR 336 (370)
T ss_pred HHHHHHHHHHCCCCEE--EeCCCCCHHHHHHHHHcCCCCeeeechHhhh--Cch-----HHHHHHcCC
Confidence 5667778888899998 679999999999999876 999999999997 786 555555554
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.6e-06 Score=86.06 Aligned_cols=152 Identities=17% Similarity=0.190 Sum_probs=94.9
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCC--CCCC-HHHHHHHHhhc--CcceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVA--RMSD-PQLIKEIKQSV--TIPVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~--~~~~-~~~i~~i~~~~--~iPv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| +++ |. ++..+.+||+- +++. .+.++.|++.+ +.||.++.....+..
T Consensus 555 ~aA~~a~~aGfDgv-eih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~- 632 (765)
T PRK08255 555 AAARRAAEAGFDWL-ELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVE- 632 (765)
T ss_pred HHHHHHHHcCCCEE-EEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccC-
Confidence 35788899999997 664 32 34555667762 2332 36777778876 578888876431100
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
...+..+.. +-++.+.+.|+|+|.+++......
T Consensus 633 --------------~g~~~~~~~-------------------~~~~~l~~~g~d~i~vs~g~~~~~-------------- 665 (765)
T PRK08255 633 --------------GGNTPDDAV-------------------EIARAFKAAGADLIDVSSGQVSKD-------------- 665 (765)
T ss_pred --------------CCCCHHHHH-------------------HHHHHHHhcCCcEEEeCCCCCCcC--------------
Confidence 011112211 223445677999999874321110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..+.. .......+.+++++..++||+ +.|+|.+++++.++++.| ||.|++|++++. ||.
T Consensus 666 --~~~~~----------~~~~~~~~~~~ik~~~~~pv~--~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~--dP~ 725 (765)
T PRK08255 666 --EKPVY----------GRMYQTPFADRIRNEAGIATI--AVGAISEADHVNSIIAAGRADLCALARPHLA--DPA 725 (765)
T ss_pred --CCCCc----------CccccHHHHHHHHHHcCCEEE--EeCCCCCHHHHHHHHHcCCcceeeEcHHHHh--Ccc
Confidence 00000 011123456677777889998 689999999999999765 999999999998 774
|
|
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.5e-05 Score=67.04 Aligned_cols=44 Identities=27% Similarity=0.495 Sum_probs=38.6
Q ss_pred CCCCCCHH-----------HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 229 AGGVATPA-----------DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 229 ~GGI~t~~-----------d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
.+||+ +. ...++++.|+|+++|||+|++++||...++++.+.+.
T Consensus 174 ~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 174 TPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred cCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 68985 44 5777889999999999999999999999999988775
|
|
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.8e-05 Score=67.36 Aligned_cols=46 Identities=28% Similarity=0.500 Sum_probs=39.2
Q ss_pred CCCCCCH-HHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 229 AGGVATP-ADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 229 ~GGI~t~-~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
.|||+.. .++..++++|+|++++||+|++++||...+++|.+.+++
T Consensus 168 dgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 168 SPGIGAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEIRG 214 (215)
T ss_pred eCCcCCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHHhc
Confidence 5999643 258888999999999999999999999999999887653
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.5e-05 Score=67.86 Aligned_cols=51 Identities=25% Similarity=0.408 Sum_probs=44.8
Q ss_pred cHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 209 PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 209 ~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
+.+.++.+++.. ++|++ .+|||++++++.+++.+|||+|++||.+.+ ||..
T Consensus 166 ~~e~i~~v~~~~~~~pl~--vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~--dp~~ 217 (223)
T TIGR01768 166 PPELVAEVKKVLDKARLF--VGGGIRSVEKAREMAEAGADTIVTGNVIEE--DVDK 217 (223)
T ss_pred CHHHHHHHHHHcCCCCEE--EecCCCCHHHHHHHHHcCCCEEEECcHHhh--CHHH
Confidence 367888888876 89998 589999999999999999999999999997 6643
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00018 Score=64.83 Aligned_cols=168 Identities=21% Similarity=0.293 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC--c-----------HHHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG--H-----------FVEAQ 108 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~--~-----------~~~a~ 108 (310)
+.+++-|..++++||+.| +||..- . .+| +.+++..++.+++.+++|+.+..|.. + ..+++
T Consensus 8 v~s~~~a~~A~~~GAdRi-ELc~~L---~-~GG--lTPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~ 80 (248)
T PRK11572 8 CYSMECALTAQQAGADRI-ELCAAP---K-EGG--LTPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIA 80 (248)
T ss_pred ECCHHHHHHHHHcCCCEE-EEccCc---C-CCC--cCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 356788999999999998 886221 1 122 35668899999999999998876542 1 25678
Q ss_pred HHHHcCCCEEE-e--C-C-CCCchhHHHHHHhcCCCCcEEE----e-cCCHHHHHH-HHHhCCCEEEEcCCCCCcchHHH
Q 021609 109 ILEAIGIDYVD-E--S-E-VLTPADEENHINKHNFRIPFVC----G-CRNLGEALR-RIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 109 ~~~~aGad~Vi-~--~-~-~~~~~~~~~~i~~~~~~i~~~v----~-~~t~~ea~~-~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
.+.+.|+|+|+ + + + .+....+.++++..+ +++++. | +.+..++.. +.++|++-|-++|... ..
T Consensus 81 ~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~-~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~--~a--- 154 (248)
T PRK11572 81 TVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG-PLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ--DA--- 154 (248)
T ss_pred HHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc-CCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC--CH---
Confidence 88889999996 2 2 2 234444455554422 222221 2 335555444 6678888887765321 10
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
....+.++++.+. .+.-|+ ++||| +++++.++..+|+..+-....
T Consensus 155 -----------------------------~~g~~~L~~lv~~a~~~~Im--~GgGV-~~~Nv~~l~~tG~~~~H~s~~ 200 (248)
T PRK11572 155 -----------------------------EQGLSLIMELIAASDGPIIM--AGAGV-RLSNLHKFLDAGVREVHSSAG 200 (248)
T ss_pred -----------------------------HHHHHHHHHHHHhcCCCEEE--eCCCC-CHHHHHHHHHcCCCEEeeCCC
Confidence 0113344444332 232244 79999 699999988999998885543
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=75.90 Aligned_cols=49 Identities=33% Similarity=0.450 Sum_probs=41.5
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCC------------------CCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGV------------------ATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI------------------~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
+.+.+.+++..++||+ +.||| .|++++.++++.| ||.|++|++++. ||.
T Consensus 269 ~~~~~~~k~~~~~pv~--~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia--dP~ 336 (361)
T cd04747 269 LNLAGWTKKLTGLPTI--TVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS--DPA 336 (361)
T ss_pred hhHHHHHHHHcCCCEE--EECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh--CcH
Confidence 4556667777889998 67998 5899999999865 999999999997 786
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.3e-05 Score=73.33 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=62.2
Q ss_pred HHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 130 ENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 130 ~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
.+.+++ .+++..+.++++|.++++.+.+.|+|||.+.+... +++
T Consensus 168 v~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~~~--------------------------e~l--------- 212 (265)
T TIGR00078 168 VKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNMKP--------------------------EEI--------- 212 (265)
T ss_pred HHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCCH--------------------------HHH---------
Confidence 444444 34568899999999999999999999998854210 000
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+..+.+. ..+|+. |+||| +++++.++.++|+|++.+ ++++.+
T Consensus 213 -k~~v~~~~--~~ipi~--AsGGI-~~~ni~~~a~~Gvd~Isv-gait~s 255 (265)
T TIGR00078 213 -KEAVQLLK--GRVLLE--ASGGI-TLDNLEEYAETGVDVISS-GALTHS 255 (265)
T ss_pred -HHHHHHhc--CCCcEE--EECCC-CHHHHHHHHHcCCCEEEe-CHHHcC
Confidence 11111122 137988 67999 799999999999999999 666653
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00017 Score=66.67 Aligned_cols=193 Identities=16% Similarity=0.148 Sum_probs=116.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.++.-|+++.+. ..+. .| .......++.+.+..++||.+.+--+ ..+.++.+.+.|+
T Consensus 24 n~~n~e~~~avi~AAe~~~~PvIl~~~~~--~~~~-~~--~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~Gf 98 (286)
T PRK06801 24 NVLDSHFLRALFAAAKQERSPFIINIAEV--HFKY-IS--LESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGF 98 (286)
T ss_pred eeCCHHHHHHHHHHHHHHCCCEEEEeCcc--hhhc-CC--HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCC
Confidence 3445654 445577778766666321 1111 11 01123456666777899999975433 4688899999999
Q ss_pred CEE-E-eCCCCCch-------hHHHHHHhcCCCC----cE-------------EEe-cCCHHHHHHHH-HhCCCEEEEcC
Q 021609 116 DYV-D-ESEVLTPA-------DEENHINKHNFRI----PF-------------VCG-CRNLGEALRRI-REGAAMIRTKG 167 (310)
Q Consensus 116 d~V-i-~~~~~~~~-------~~~~~i~~~~~~i----~~-------------~v~-~~t~~ea~~~~-~~Gad~V~v~g 167 (310)
+.| + .+. ++.+ ++.++.+.++..+ -. ..+ -++++++.+.. +.|+|++.+.-
T Consensus 99 tSVm~D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvai 177 (286)
T PRK06801 99 SSVMFDGST-LEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAI 177 (286)
T ss_pred cEEEEcCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEecc
Confidence 999 3 332 3322 2333333332111 00 001 23558888877 67999988732
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCC
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gad 247 (310)
++-+- .++ .....+++.++++++..++|+++..+.|| +.+++.+++++|++
T Consensus 178 --Gt~Hg---------------~y~-----------~~~~l~~e~l~~i~~~~~~PLVlHGGSgi-~~e~~~~~i~~Gi~ 228 (286)
T PRK06801 178 --GNAHG---------------KYK-----------GEPKLDFARLAAIHQQTGLPLVLHGGSGI-SDADFRRAIELGIH 228 (286)
T ss_pred --CCCCC---------------CCC-----------CCCCCCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHHcCCc
Confidence 11110 000 01134588899998888899997744449 58999999999999
Q ss_pred EEEEccccccCCCHHHHHHHHHHHHh
Q 021609 248 GVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 248 gV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
.|-++|.+.. ...+.+.+.+.
T Consensus 229 KINv~T~~~~-----a~~~~~~~~~~ 249 (286)
T PRK06801 229 KINFYTGMSQ-----AALAAVEQRMT 249 (286)
T ss_pred EEEehhHHHH-----HHHHHHHHHHH
Confidence 9999999985 33444545443
|
|
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.5e-05 Score=72.85 Aligned_cols=164 Identities=21% Similarity=0.287 Sum_probs=97.3
Q ss_pred HHHHHHHHcCCcEEEec--------c-----CCcccccccCCCC--CCC-CHHHHHHHHhhcC--cceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMAL--------E-----RVPADIRSQGGVA--RMS-DPQLIKEIKQSVT--IPVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L--------~-----~~~~~~~~~~G~~--~~~-~~~~i~~i~~~~~--iPv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| ++ + ..+...+++|||- +++ ..+.++.++++++ .||.++.....+..
T Consensus 153 ~AA~rA~~AGFDgV-EIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~- 230 (363)
T COG1902 153 RAARRAKEAGFDGV-EIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFD- 230 (363)
T ss_pred HHHHHHHHcCCCEE-EEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCC-
Confidence 46888999999998 43 1 2345556667763 222 2356677787774 45666544321100
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhC-CCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREG-AAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~G-ad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
....+..+.. +-++.+.+.| +|++-+.++.....
T Consensus 231 -------------~~g~~~~e~~-------------------~la~~L~~~G~~d~i~vs~~~~~~~------------- 265 (363)
T COG1902 231 -------------GGGLTIEEAV-------------------ELAKALEEAGLVDYIHVSEGGYERG------------- 265 (363)
T ss_pred -------------CCCCCHHHHH-------------------HHHHHHHhcCCccEEEeecccccCC-------------
Confidence 0001111111 2244455678 69988776543110
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a 265 (310)
.... + ............++...++|++ +.|+|.+++.+.++++.| ||-|.+|++++. ||.
T Consensus 266 -----~~~~------~-~~~~~~~~~a~~i~~~~~~pvi--~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la--dP~--- 326 (363)
T COG1902 266 -----GTIT------V-SGPGYQVEFAARIKKAVRIPVI--AVGGINDPEQAEEILASGRADLVAMGRPFLA--DPD--- 326 (363)
T ss_pred -----CCcc------c-cccchhHHHHHHHHHhcCCCEE--EeCCCCCHHHHHHHHHcCCCCEEEechhhhc--Ccc---
Confidence 0000 0 0012224455667776779999 679999999999999997 999999999998 775
Q ss_pred HHHHHHHhccCC
Q 021609 266 QAIVRAVTHYSD 277 (310)
Q Consensus 266 ~~l~~~i~~~~~ 277 (310)
|.+.+++...
T Consensus 327 --~~~k~~~g~~ 336 (363)
T COG1902 327 --LVLKAAEGRE 336 (363)
T ss_pred --HHHHHHcCCC
Confidence 4444544443
|
|
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-05 Score=72.00 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=64.3
Q ss_pred HHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 130 ENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 130 ~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
.+.+++ .+++..+.++++|.+++..+.+.|+|||.+.+..
T Consensus 172 v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~~--------------------------------------- 212 (268)
T cd01572 172 VRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNMS--------------------------------------- 212 (268)
T ss_pred HHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCcC---------------------------------------
Confidence 444444 3346789999999999999999999999875321
Q ss_pred cHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++++.+.. ++|+. |+||| +++++.++.++|+|++.+|+....+
T Consensus 213 -~e~l~~~~~~~~~~ipi~--AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 213 -PEELREAVALLKGRVLLE--ASGGI-TLENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred -HHHHHHHHHHcCCCCcEE--EECCC-CHHHHHHHHHcCCCEEEEEeeecCC
Confidence 11223332222 58998 67999 7999999999999999999977643
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.4e-05 Score=66.13 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=92.0
Q ss_pred HHHHHHHHhhc-CcceeeccccCc--HHHHHHHHHcCCCEEEeCCCCCchhHHHHHH---hcCCC-CcEEEecCCHHHHH
Q 021609 81 PQLIKEIKQSV-TIPVMAKARIGH--FVEAQILEAIGIDYVDESEVLTPADEENHIN---KHNFR-IPFVCGCRNLGEAL 153 (310)
Q Consensus 81 ~~~i~~i~~~~-~iPv~vk~~~~~--~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~---~~~~~-i~~~v~~~t~~ea~ 153 (310)
++.++++++.+ +.++.+...+.+ ...++.+.++|+|.+.....-....+....+ +++.. .+-+..+.|..++.
T Consensus 44 ~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~t~~~~~ 123 (218)
T PRK13305 44 LGAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNWTLDDAR 123 (218)
T ss_pred HHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEecCcchHH
Confidence 67888888765 678888665532 2345667799999774222222332222222 11212 22333444444444
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc-cCCcHHHHHHHhhcC--CCCEEEeCCC
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK-IAAPYDLVMQTKQLG--RLPVVHFAAG 230 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~-~~~~~~~i~~i~~~~--~iPVi~iA~G 230 (310)
...+.|.+.+.+|-. . + ....+ .+++.+ ++.+++.. +.++. ..|
T Consensus 124 ~l~~~g~~~~v~h~a--------------~-------------~---a~~~G~v~s~~e-~~~ir~~~~~~~~i~--Vtp 170 (218)
T PRK13305 124 DWHRIGVRQAIYHRG--------------R-------------D---AQASGQQWGEAD-LARMKALSDIGLELS--ITG 170 (218)
T ss_pred HHHHcCCHHHHHHHH--------------H-------------H---HHHhCCCCCHHH-HHHHHHHhCCCCcEE--EeC
Confidence 444555542222210 0 0 00001 123333 34444432 34455 479
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
||+ ++.....-+.+.|.++|||+|++++||..+++++.+.++.
T Consensus 171 GIr-~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 171 GIT-PADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHAQIDA 213 (218)
T ss_pred CcC-ccccccccccCCCEEEECCcccCCCCHHHHHHHHHHHHHH
Confidence 995 8888777788999999999999999999999999888854
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.8e-05 Score=71.59 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=64.0
Q ss_pred hhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+..+.+++ .++...+.++++|.++++.+.+.|+|||.+... +
T Consensus 175 ~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~~--------------------------~---------- 218 (277)
T PRK08072 175 TKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDNR--------------------------T---------- 218 (277)
T ss_pred HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECCC--------------------------C----------
Confidence 344444444 344578999999999999999999999987321 0
Q ss_pred cCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++++.+.. ++|+. |.||| +++++.++.++|+|++.+|+....+
T Consensus 219 ----~e~l~~~~~~~~~~i~i~--AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 219 ----PDEIREFVKLVPSAIVTE--ASGGI-TLENLPAYGGTGVDYISLGFLTHSV 266 (277)
T ss_pred ----HHHHHHHHHhcCCCceEE--EECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 12233333322 35666 67999 7999999999999999999866643
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00019 Score=63.17 Aligned_cols=43 Identities=21% Similarity=0.458 Sum_probs=38.4
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.+.+.++++++..++|++ .+|||++++++.++++.|||+|++|
T Consensus 163 v~~e~i~~Vk~~~~~Pv~--vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 163 VNPETISLVKKASGIPLI--VGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred CCHHHHHHHHHhhCCCEE--EeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 347788889888899998 6899999999999989999999997
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00033 Score=61.42 Aligned_cols=166 Identities=23% Similarity=0.310 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--Cc-----------HHHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--GH-----------FVEAQ 108 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~-----------~~~a~ 108 (310)
+.+++.+..++++||+.| .||... . .+| +.+++..++.+++.+++|+.+..|. ++ .++++
T Consensus 7 v~s~~~a~~A~~~GAdRi-ELc~~l---~-~GG--lTPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~ 79 (201)
T PF03932_consen 7 VESLEDALAAEAGGADRI-ELCSNL---E-VGG--LTPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIR 79 (201)
T ss_dssp ESSHHHHHHHHHTT-SEE-EEEBTG---G-GT---B---HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEE-EECCCc---c-CCC--cCcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHH
Confidence 356788999999999998 776221 1 122 3466889999999999999887655 21 26678
Q ss_pred HHHHcCCCEEE-e---CCC-CCchhHHHHHHhcCCCCcEEE----e-cCCHHHHHH-HHHhCCCEEEEcCCCCCcchHHH
Q 021609 109 ILEAIGIDYVD-E---SEV-LTPADEENHINKHNFRIPFVC----G-CRNLGEALR-RIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 109 ~~~~aGad~Vi-~---~~~-~~~~~~~~~i~~~~~~i~~~v----~-~~t~~ea~~-~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
.+.+.|+|+++ + .+. +....+.+++...+ +++++. | +.+..++.. +.++|++-|-++|...+
T Consensus 80 ~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~-~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~------ 152 (201)
T PF03932_consen 80 MLRELGADGFVFGALTEDGEIDEEALEELIEAAG-GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPT------ 152 (201)
T ss_dssp HHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT-TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSS------
T ss_pred HHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC-CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCC------
Confidence 88889999996 2 222 33344455554422 333221 1 345555554 45788888877764211
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVG 252 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VG 252 (310)
.....+.++++.+. .++.++ ++||| +++++..+.+ +|+..+-.+
T Consensus 153 ----------------------------a~~g~~~L~~lv~~a~~~i~Im--~GgGv-~~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 153 ----------------------------ALEGIENLKELVEQAKGRIEIM--PGGGV-RAENVPELVEETGVREIHGS 199 (201)
T ss_dssp ----------------------------TTTCHHHHHHHHHHHTTSSEEE--EESS---TTTHHHHHHHHT-SEEEET
T ss_pred ----------------------------HHHHHHHHHHHHHHcCCCcEEE--ecCCC-CHHHHHHHHHhhCCeEEeec
Confidence 01123444444332 356676 78999 6999999986 899887643
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.5e-05 Score=70.52 Aligned_cols=61 Identities=21% Similarity=0.382 Sum_probs=50.5
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+..+++++++++..++|++ ++|||++.+|+.+++..||++|++|+++++ ||.. .+++.+.+
T Consensus 57 ~~~~~~i~~i~~~~~~pv~--~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~--~p~~-~~~i~~~~ 117 (243)
T cd04731 57 ETMLDVVERVAEEVFIPLT--VGGGIRSLEDARRLLRAGADKVSINSAAVE--NPEL-IREIAKRF 117 (243)
T ss_pred cccHHHHHHHHHhCCCCEE--EeCCCCCHHHHHHHHHcCCceEEECchhhh--ChHH-HHHHHHHc
Confidence 4457888999888889998 789999999999999999999999999997 7753 33355544
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=9.5e-06 Score=77.20 Aligned_cols=118 Identities=22% Similarity=0.174 Sum_probs=83.2
Q ss_pred EEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC
Q 021609 142 FVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR 221 (310)
Q Consensus 142 ~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~ 221 (310)
+..++.+++|+..+...|++.|.+.++++. .+ ....++.+.+.++.+..+
T Consensus 222 v~kGV~~~~D~~~a~~tg~~~I~vsnhggr------------------ql------------D~g~st~~~L~ei~~av~ 271 (360)
T COG1304 222 VLKGILAPEDAAGAGGTGADGIEVSNHGGR------------------QL------------DWGISTADSLPEIVEAVG 271 (360)
T ss_pred HHhCCCCHHHHHhhccCCceEEEEEcCCCc------------------cc------------cCCCChHHHHHHHHHHhC
Confidence 444677889999999999999888765431 00 012455777777877654
Q ss_pred --CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCcc
Q 021609 222 --LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 299 (310)
Q Consensus 222 --iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (310)
+||+ ++|||++..|+.+++.+||++|.+|+.++. + .+..=...+ .+.+..+.+++-.+|...|.+.
T Consensus 272 ~~~~vi--~dGGiR~G~Dv~KAlALGA~~v~igrp~L~---~--l~~~g~~GV-----~~~le~~~~El~~~M~L~G~~~ 339 (360)
T COG1304 272 DRIEVI--ADGGIRSGLDVAKALALGADAVGIGRPFLY---G--LAAGGEAGV-----ERVLEIIRKELKIAMALTGAKN 339 (360)
T ss_pred CCeEEE--ecCCCCCHHHHHHHHHhCCchhhhhHHHHH---H--HHhccHHHH-----HHHHHHHHHHHHHHHHhcCCCc
Confidence 8888 899999999999999999999999998885 1 111111111 1334567777778888888776
Q ss_pred ch
Q 021609 300 HK 301 (310)
Q Consensus 300 ~~ 301 (310)
++
T Consensus 340 i~ 341 (360)
T COG1304 340 IE 341 (360)
T ss_pred HH
Confidence 64
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0003 Score=60.57 Aligned_cols=153 Identities=24% Similarity=0.283 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc---CcceeeccccC--------cHHHHHHHHHcC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV---TIPVMAKARIG--------HFVEAQILEAIG 114 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~---~iPv~vk~~~~--------~~~~a~~~~~aG 114 (310)
++++.+.+.|++++ .++ .+.++.+++.+ .+|++++.... ..+.++.+.++|
T Consensus 17 ~~~~~~~~~gv~gi-~~~-----------------g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~G 78 (201)
T cd00945 17 KLCDEAIEYGFAAV-CVN-----------------PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLG 78 (201)
T ss_pred HHHHHHHHhCCcEE-EEC-----------------HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence 56778888999987 321 24555555443 48888865332 136678889999
Q ss_pred CCEEEeC-C-C--CC--chhHHHHHHh---c-CCCCcEEEecC-----CHHHHHH----HHHhCCCEEEEcCCCCCcchH
Q 021609 115 IDYVDES-E-V--LT--PADEENHINK---H-NFRIPFVCGCR-----NLGEALR----RIREGAAMIRTKGEAGTGNII 175 (310)
Q Consensus 115 ad~Vi~~-~-~--~~--~~~~~~~i~~---~-~~~i~~~v~~~-----t~~ea~~----~~~~Gad~V~v~g~~~~~~~~ 175 (310)
+|++... . . .+ ...+.+.+++ . ..++++++... +.++..+ +.+.|++.|+.......+
T Consensus 79 ad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~--- 155 (201)
T cd00945 79 ADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGG--- 155 (201)
T ss_pred CCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCC---
Confidence 9999632 2 1 11 2333333332 2 13566665433 4444433 346799999876321100
Q ss_pred HHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 176 ~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
..+++.++.+.+.. ++|++ +.||+.+++++..++..|++|+++|
T Consensus 156 -------------------------------~~~~~~~~~i~~~~~~~~~v~--~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 156 -------------------------------GATVEDVKLMKEAVGGRVGVK--AAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred -------------------------------CCCHHHHHHHHHhcccCCcEE--EECCCCCHHHHHHHHHhccceeecC
Confidence 11233444454433 56887 5699988999999999999999875
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.4e-05 Score=71.31 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=67.8
Q ss_pred hhHHHHHHhc-CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINKH-NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~~-~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+....+++. ++...+.++++|.+|+..+.++|+|+|.+.+... +++
T Consensus 183 ~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~~~--------------------------e~l------ 230 (288)
T PRK07428 183 GEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNMPV--------------------------DLM------ 230 (288)
T ss_pred HHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCCCH--------------------------HHH------
Confidence 3444455542 3457899999999999999999999998864321 111
Q ss_pred cCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 206 IAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 206 ~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+.+..+++ ..++|+. |+||| +++++.++.++|+|++.+|+.+.+++
T Consensus 231 ----~~av~~~~~~~~~i~le--AsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 231 ----QQAVQLIRQQNPRVKIE--ASGNI-TLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred ----HHHHHHHHhcCCCeEEE--EECCC-CHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 111222221 2467877 78999 79999999999999999999998754
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.7e-05 Score=71.60 Aligned_cols=90 Identities=21% Similarity=0.239 Sum_probs=63.3
Q ss_pred hHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC
Q 021609 128 DEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA 207 (310)
Q Consensus 128 ~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~ 207 (310)
+..+.+++..++..+.++++|.+++.++.+.|+|+|.+.+...+ .
T Consensus 172 ~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld~~~p~-~---------------------------------- 216 (272)
T cd01573 172 KALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLDKFSPE-E---------------------------------- 216 (272)
T ss_pred HHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEECCCCHH-H----------------------------------
Confidence 34445544444567899999999999999999999998642110 0
Q ss_pred CcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 208 APYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 208 ~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
..+.++.+++. .++|++ |+||| +++++.++.++|+|+++ .++++.
T Consensus 217 -l~~~~~~~~~~~~~i~i~--AsGGI-~~~ni~~~~~~Gvd~I~-vsai~~ 262 (272)
T cd01573 217 -LAELVPKLRSLAPPVLLA--AAGGI-NIENAAAYAAAGADILV-TSAPYY 262 (272)
T ss_pred -HHHHHHHHhccCCCceEE--EECCC-CHHHHHHHHHcCCcEEE-EChhhc
Confidence 01233334332 368988 67999 79999999999999995 455554
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.9e-05 Score=70.61 Aligned_cols=89 Identities=18% Similarity=0.241 Sum_probs=64.0
Q ss_pred HHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 129 EENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 129 ~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
..+.+++..++..+.++++|.+++..+.+.|+|+|.+.+.+ ++++
T Consensus 179 av~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~~~--------------------------~e~l--------- 223 (277)
T PRK05742 179 AVAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDELS--------------------------LDDM--------- 223 (277)
T ss_pred HHHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH---------
Confidence 34444444456789999999999999999999999774321 1110
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.++ .++|+. |+||| +++++.++.++|+|++.+|+....+
T Consensus 224 -~~~v~~~~--~~i~le--AsGGI-t~~ni~~~a~tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 224 -REAVRLTA--GRAKLE--ASGGI-NESTLRVIAETGVDYISIGAMTKDV 267 (277)
T ss_pred -HHHHHHhC--CCCcEE--EECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 01111121 368998 77999 7999999999999999999977654
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.8e-05 Score=70.56 Aligned_cols=91 Identities=21% Similarity=0.258 Sum_probs=64.1
Q ss_pred hHHHHHHhc-CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc
Q 021609 128 DEENHINKH-NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI 206 (310)
Q Consensus 128 ~~~~~i~~~-~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~ 206 (310)
...+.+++. +++..+.++++|.+|+..+.+.|+|+|.+.+... +.+
T Consensus 169 ~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~~--------------------------e~l------- 215 (269)
T cd01568 169 EAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMSP--------------------------EEL------- 215 (269)
T ss_pred HHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCH--------------------------HHH-------
Confidence 334555553 3468899999999999999999999999854211 000
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.+.++.+++..++|+. ++||| +++++.++.++|+|++.+|+.+..
T Consensus 216 ---~~~v~~i~~~~~i~i~--asGGI-t~~ni~~~a~~Gad~Isvgal~~s 260 (269)
T cd01568 216 ---KEAVKLLKGLPRVLLE--ASGGI-TLENIRAYAETGVDVISTGALTHS 260 (269)
T ss_pred ---HHHHHHhccCCCeEEE--EECCC-CHHHHHHHHHcCCCEEEEcHHHcC
Confidence 1122223222367887 67999 799999999999999999655544
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0023 Score=56.70 Aligned_cols=184 Identities=23% Similarity=0.274 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC--c-ceeeccccCcHHHHHHHHHcCCCE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT--I-PVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--i-Pv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
+++++.|+.+.++|++.+ +.+. ..|.+.-+++..+++.+.+. + +|.+-......+-.+.+.+.+.|.
T Consensus 10 i~~~eda~~~~~~Gad~iGfI~~---------~~S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~ 80 (210)
T PRK01222 10 ITTPEDAEAAAELGADAIGFVFY---------PKSPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDL 80 (210)
T ss_pred CCcHHHHHHHHHcCCCEEEEccC---------CCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCE
Confidence 688999999999999987 3221 12323345778888876653 2 333322212234446778899999
Q ss_pred EEeCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHH--hCCCEEEEcCC----CCCcchHHHHHHHHhhccceEe
Q 021609 118 VDESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIR--EGAAMIRTKGE----AGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~--~Gad~V~v~g~----~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
|-.+...++..+ +.++. .+..+.-.+.+.+..+...+.+ ..+|++-+... +++|
T Consensus 81 vQLHg~e~~~~~-~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG------------------ 141 (210)
T PRK01222 81 LQLHGDETPEFC-RQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTG------------------ 141 (210)
T ss_pred EEECCCCCHHHH-HHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCC------------------
Confidence 954444444333 44443 2233444445554433333322 25677665432 1222
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccC---CCHHHHHH
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS---GDPVKRAQ 266 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a---~dp~~~a~ 266 (310)
..-+|..+. .+ .+.|++ .+||| +++++.+++. .+++||=+.|.+=.+ .|+. ..+
T Consensus 142 ---------------~~~dw~~l~--~~-~~~p~~--LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~~G~KD~~-ki~ 199 (210)
T PRK01222 142 ---------------KTFDWSLLP--AG-LAKPWI--LAGGL-NPDNVAEAIRQVRPYGVDVSSGVESAPGIKDPE-KIR 199 (210)
T ss_pred ---------------CccchHHhh--hc-cCCCEE--EECCC-CHHHHHHHHHhcCCCEEEecCceECCCCCcCHH-HHH
Confidence 122354441 12 246898 47999 7999999996 599999999999863 3654 444
Q ss_pred HHHHHHhcc
Q 021609 267 AIVRAVTHY 275 (310)
Q Consensus 267 ~l~~~i~~~ 275 (310)
+|++.++.+
T Consensus 200 ~f~~~~~~~ 208 (210)
T PRK01222 200 AFIEAVKSA 208 (210)
T ss_pred HHHHHHHhh
Confidence 576666543
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.9e-05 Score=69.70 Aligned_cols=61 Identities=20% Similarity=0.331 Sum_probs=50.4
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
..+++.++++++..++|++ ++|||++.+|+.+++..||++|++|+.+++ ||.. .+++.+.+
T Consensus 60 ~~~~~~i~~i~~~~~ipv~--~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~--~p~~-~~ei~~~~ 120 (253)
T PRK02083 60 DTMLDVVERVAEQVFIPLT--VGGGIRSVEDARRLLRAGADKVSINSAAVA--NPEL-ISEAADRF 120 (253)
T ss_pred cchHHHHHHHHHhCCCCEE--eeCCCCCHHHHHHHHHcCCCEEEEChhHhh--CcHH-HHHHHHHc
Confidence 4568889999888889998 789999999999999999999999999997 6753 33344443
|
|
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00037 Score=61.72 Aligned_cols=58 Identities=28% Similarity=0.541 Sum_probs=44.9
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+.+.++++.+. .|++ -.|||+++++++++.++|||.+++|+.+.+ +| ..+.+.+.+++
T Consensus 181 ~~e~v~~v~~~--~~Li--vGGGIrs~E~A~~~a~agAD~IVtG~iiee--~~-~~~~~~v~~~k 238 (240)
T COG1646 181 PVEMVSRVLSD--TPLI--VGGGIRSPEQAREMAEAGADTIVTGTIIEE--DP-DKALETVEAIK 238 (240)
T ss_pred CHHHHHHhhcc--ceEE--EcCCcCCHHHHHHHHHcCCCEEEECceeec--CH-HHHHHHHHHhh
Confidence 35666666653 3787 589999999999999999999999999997 66 44444665554
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0014 Score=60.60 Aligned_cols=184 Identities=16% Similarity=0.143 Sum_probs=111.3
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+..-|+++.+. ..+. .|. .....++.+.+..++||.+.+--+ ..+.++.+.+.|.
T Consensus 19 N~~n~e~~~avi~AAee~~sPvIl~~~~~--~~~~-~~~---~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf 92 (283)
T PRK08185 19 NVADSCFLRAVVEEAEANNAPAIIAIHPN--ELDF-LGD---NFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGF 92 (283)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEeCcc--hhhh-ccH---HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 3445554 445677888876666321 1111 111 124566666777899999875433 5688899999999
Q ss_pred CEEE-eCCCCCchh-------HHHHHHhcCC------C-C-------cEEEe---cCCHHHHHHHHHh-CCCEEEEcCCC
Q 021609 116 DYVD-ESEVLTPAD-------EENHINKHNF------R-I-------PFVCG---CRNLGEALRRIRE-GAAMIRTKGEA 169 (310)
Q Consensus 116 d~Vi-~~~~~~~~~-------~~~~i~~~~~------~-i-------~~~v~---~~t~~ea~~~~~~-Gad~V~v~g~~ 169 (310)
+.|. -...++..+ +.++.+.++. + + ....+ .++++++.+..+. |+|++.+.-.+
T Consensus 93 ~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt 172 (283)
T PRK08185 93 TSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGT 172 (283)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCc
Confidence 9994 222244332 2233333221 1 1 00111 4588999998865 99999873111
Q ss_pred CCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 170 GTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
-.+ ++++-. ...-+++.++++++..++|+++..+.|+ ..+++.++...|..=|
T Consensus 173 ~HG-----------------~y~~~~---------kp~L~~e~l~~I~~~~~iPLVlHGgsg~-~~e~~~~ai~~GI~Ki 225 (283)
T PRK08185 173 AHG-----------------IYPKDK---------KPELQMDLLKEINERVDIPLVLHGGSAN-PDAEIAESVQLGVGKI 225 (283)
T ss_pred ccC-----------------CcCCCC---------CCCcCHHHHHHHHHhhCCCEEEECCCCC-CHHHHHHHHHCCCeEE
Confidence 000 111100 1123488999999888999997744444 3578889999999999
Q ss_pred EEcccccc
Q 021609 250 FVGSGVFK 257 (310)
Q Consensus 250 ~VGsai~~ 257 (310)
=+++.+..
T Consensus 226 Ni~T~l~~ 233 (283)
T PRK08185 226 NISSDMKY 233 (283)
T ss_pred EeChHHHH
Confidence 99998875
|
|
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0001 Score=70.60 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=44.6
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
..+.+.+++.+++||+ +.|++ +++.+.++++.| ||.|.+|++++. ||. |.+.+.+..+
T Consensus 281 ~~~~~~ik~~~~~pv~--~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia--dPd-----~~~k~~~g~~ 339 (362)
T PRK10605 281 DAFREKVRARFHGVII--GAGAY-TAEKAETLIGKGLIDAVAFGRDYIA--NPD-----LVARLQRKAE 339 (362)
T ss_pred HHHHHHHHHHCCCCEE--EeCCC-CHHHHHHHHHcCCCCEEEECHHhhh--Ccc-----HHHHHhcCCC
Confidence 3455677777788998 56886 899999999887 999999999997 775 4444555443
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.6e-05 Score=68.81 Aligned_cols=52 Identities=23% Similarity=0.438 Sum_probs=46.4
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
...+++++++++..++||+ ++|||++.+|+.+++.+||+.|++|+++++ ||.
T Consensus 60 ~~n~~~i~~i~~~~~~pv~--~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~--~p~ 111 (254)
T TIGR00735 60 TTMIDVVERTAETVFIPLT--VGGGIKSIEDVDKLLRAGADKVSINTAAVK--NPE 111 (254)
T ss_pred hhhHHHHHHHHHhcCCCEE--EECCCCCHHHHHHHHHcCCCEEEEChhHhh--ChH
Confidence 3457788889888889998 789999999999999999999999999997 775
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=8e-05 Score=68.39 Aligned_cols=94 Identities=18% Similarity=0.250 Sum_probs=66.3
Q ss_pred chhHHHHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 126 PADEENHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+..+.++...+ ...+.+++.|.+|+..+.++|+|+|.+-+.. ++.+
T Consensus 168 i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~~--------------------------~e~l----- 216 (273)
T PRK05848 168 LKEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNMS--------------------------VEEI----- 216 (273)
T ss_pred HHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH-----
Confidence 3455566655444 4789999999999999999999999875421 0000
Q ss_pred ccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.++. ..++.+. |+||| |++++.++.++|+|.+.+|+.+..+
T Consensus 217 -----~~~v~~~~~~~~~~~ie--AsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa 263 (273)
T PRK05848 217 -----KEVVAYRNANYPHVLLE--ASGNI-TLENINAYAKSGVDAISSGSLIHQA 263 (273)
T ss_pred -----HHHHHHhhccCCCeEEE--EECCC-CHHHHHHHHHcCCCEEEeChhhcCC
Confidence 111222221 1234455 89999 8999999999999999999988864
|
|
| >KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00045 Score=64.21 Aligned_cols=205 Identities=20% Similarity=0.234 Sum_probs=117.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccC-CCCCCCCHHHHHHHHhhcCcceeeccccCc-----------HHHHHHHHHc
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQG-GVARMSDPQLIKEIKQSVTIPVMAKARIGH-----------FVEAQILEAI 113 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~-G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~-----------~~~a~~~~~a 113 (310)
++|..|-+.|||.++-||-.. .|..- +. .+.++.+++..+.+.+|+.+...+.+ .+.+..+...
T Consensus 273 ~Laq~Yyq~GADEv~FLNITs--FRdcPl~D--~PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFRS 348 (541)
T KOG0623|consen 273 DLAQQYYQDGADEVSFLNITS--FRDCPLGD--LPMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFRS 348 (541)
T ss_pred HHHHHHHhcCCceeEEEeecc--ccCCCccc--ChHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHhc
Confidence 789999999999997787111 11111 11 11234555555667899998654421 3667889999
Q ss_pred CCCEE-EeCCCCCc-------------hhHHHHHHh-cCCCCcEEEec--C-----CHHHHH----HHHHhCC------C
Q 021609 114 GIDYV-DESEVLTP-------------ADEENHINK-HNFRIPFVCGC--R-----NLGEAL----RRIREGA------A 161 (310)
Q Consensus 114 Gad~V-i~~~~~~~-------------~~~~~~i~~-~~~~i~~~v~~--~-----t~~ea~----~~~~~Ga------d 161 (310)
|||.| +++++... ..-++.+.+ ++. ..+.+++ + .+++.. +....|+ |
T Consensus 349 GADKvSIGsDAVyAAEkyye~G~k~~Gks~iEtISkaYGn-QAVViSvDPkRvYVn~p~Dtk~kV~~t~~pGPNGE~YcW 427 (541)
T KOG0623|consen 349 GADKVSIGSDAVYAAEKYYESGVKGTGKSSIETISKAYGN-QAVVISVDPKRVYVNHPDDTKYKVIRTTNPGPNGEEYCW 427 (541)
T ss_pred CCceeeechhHHHHHHHHHHhccCCCCcChHHHHHHHhCC-eeEEEEeCCceeeecCCccCcceEEEecCCCCCCceeEE
Confidence 99999 46654211 112233333 332 2233322 1 222211 1112222 1
Q ss_pred E-EEEcC-CCCCc-chHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHH
Q 021609 162 M-IRTKG-EAGTG-NIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 162 ~-V~v~g-~~~~~-~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~ 238 (310)
| ..+.| +.+.+ ...+.-+++.++-...-++..++.|+ .+.+.++++++.+++.+++||| |+.|-.+|++.
T Consensus 428 YQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNCiD~DG-----sn~GyDieLv~lvkdsV~IPVI--ASSGAG~P~HF 500 (541)
T KOG0623|consen 428 YQCTVKGGREGRDIGVFELTRACEALGAGEILLNCIDCDG-----SNKGYDIELVKLVKDSVGIPVI--ASSGAGTPDHF 500 (541)
T ss_pred EEEEEcCCcccCccchhhHHHHHHHhCcchheeeeeccCC-----CCCCcchhHHHHhhcccCCceE--ecCCCCCcHHH
Confidence 2 12332 22211 11233344433333344555544432 1346679999999999999998 89999999999
Q ss_pred HHHH-HcCCCEEEEccccccCCCHH
Q 021609 239 AMMM-QLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 239 ~~~l-~~GadgV~VGsai~~a~dp~ 262 (310)
.++. +..||+.+....|.+.+-|.
T Consensus 501 eEvF~kT~adAaLaAGiFHR~e~~i 525 (541)
T KOG0623|consen 501 EEVFEKTNADAALAAGIFHRKEVPI 525 (541)
T ss_pred HHHHHhcCchhhhhccceecCccch
Confidence 9998 68899998887777755543
|
|
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.003 Score=55.65 Aligned_cols=184 Identities=26% Similarity=0.297 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cc-eeeccccCcHHHHHHHHHcCCCEE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IP-VMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iP-v~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+++++.|+.+.++||+.+ +...+ .|-+..+++..+++.+... ++ |.+...-...+..+.+.+.+.|.|
T Consensus 9 lt~~eda~~a~~~gad~iG~If~~---------~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~V 79 (208)
T COG0135 9 LTRLEDAKAAAKAGADYIGFIFVP---------KSPRYVSPEQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAV 79 (208)
T ss_pred CCCHHHHHHHHHcCCCEEEEEEcC---------CCCCcCCHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEE
Confidence 688999999999999987 22211 1223445788888877654 33 222221112234467778999999
Q ss_pred EeCCCCCchhHHHHHHhcC-CCCcEEEecCCHHH--HHHHHHhCCCEEEEcCC-----CCCcchHHHHHHHHhhccceEe
Q 021609 119 DESEVLTPADEENHINKHN-FRIPFVCGCRNLGE--ALRRIREGAAMIRTKGE-----AGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~-~~i~~~v~~~t~~e--a~~~~~~Gad~V~v~g~-----~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
-.+...+++.+ +.++... ..+.-.+.+....+ .......-+|.+-+-.. +++|
T Consensus 80 QlHG~e~~~~~-~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG------------------ 140 (208)
T COG0135 80 QLHGDEDPEYI-DQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTG------------------ 140 (208)
T ss_pred EECCCCCHHHH-HHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCC------------------
Confidence 54444444444 4444432 33443444443212 22222334566655432 2222
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCC-CEEEEccccccC---CCHHHHHH
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC-DGVFVGSGVFKS---GDPVKRAQ 266 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Ga-dgV~VGsai~~a---~dp~~~a~ 266 (310)
..-+|..+... ....|++ .+||+ +++|+.++++.++ .||=+.|.+=.+ .||.+ .+
T Consensus 141 ---------------~~fDW~~l~~~--~~~~~~~--LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~k-v~ 199 (208)
T COG0135 141 ---------------QTFDWNLLPKL--RLSKPVM--LAGGL-NPDNVAEAIALGPPYGVDVSSGVESSPGIKDPAK-VK 199 (208)
T ss_pred ---------------cEECHHHhccc--cccCCEE--EECCC-CHHHHHHHHHhcCCceEEeccccccCCCCCCHHH-HH
Confidence 12246655544 2456887 47999 7999999999988 999999999876 37654 34
Q ss_pred HHHHHHhc
Q 021609 267 AIVRAVTH 274 (310)
Q Consensus 267 ~l~~~i~~ 274 (310)
+|++.++.
T Consensus 200 ~f~~~vk~ 207 (208)
T COG0135 200 AFFEAVKR 207 (208)
T ss_pred HHHHHHhc
Confidence 47766653
|
|
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00051 Score=64.65 Aligned_cols=196 Identities=19% Similarity=0.213 Sum_probs=105.7
Q ss_pred cCCCHH-HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh--cCcceeeccccC------------cHH
Q 021609 41 DVVTPE-QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS--VTIPVMAKARIG------------HFV 105 (310)
Q Consensus 41 ~~~~~~-~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~--~~iPv~vk~~~~------------~~~ 105 (310)
...+++ ..+.+.++|++++ .+. .-.++..... .++|++++..-+ .+-
T Consensus 89 gl~dp~~~i~~a~~~g~dAv-~~~-----------------~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~ 150 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAV-AST-----------------LGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTA 150 (348)
T ss_pred cccCHHHHHHHHHhcCCCEE-EeC-----------------HHHHHhccccccCCCCEEEEeCCCCCCCCCCCCccccee
Confidence 455665 6677788999997 220 1233332211 257777763211 123
Q ss_pred HHHHHHHcCCCEEEeC----CCCC---chhHHHHHHh-cCCCCcEEEe--cC-----CH----------HH-HHHHHHhC
Q 021609 106 EAQILEAIGIDYVDES----EVLT---PADEENHINK-HNFRIPFVCG--CR-----NL----------GE-ALRRIREG 159 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~----~~~~---~~~~~~~i~~-~~~~i~~~v~--~~-----t~----------~e-a~~~~~~G 159 (310)
.++.+.+.|||+|-.+ +..+ ..++.+...+ +..++++++- .. +. .. ++.+.++|
T Consensus 151 sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELG 230 (348)
T PRK09250 151 SVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIG 230 (348)
T ss_pred cHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHc
Confidence 4788999999999411 1111 2344444433 4567776652 11 11 11 34456899
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccc--eEeecccChhHHHHhhhccCCcHHHHHHHhhcC---CCCEEEeCCCCCC-
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGD--IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG---RLPVVHFAAGGVA- 233 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~--~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~---~iPVi~iA~GGI~- 233 (310)
+|+|++.-++ +.. ..+.+ -... .+.+.. .....+.+..+.+.+.. ++||+ .+||=+
T Consensus 231 ADIVKv~yp~---~~~-~f~~v--~~~~~~~~~~~~----------~~~~~~~~~~~~~V~ac~ag~vpVv--iAGG~k~ 292 (348)
T PRK09250 231 ADIIKQKLPT---NNG-GYKAI--NFGKTDDRVYSK----------LTSDHPIDLVRYQVANCYMGRRGLI--NSGGASK 292 (348)
T ss_pred CCEEEecCCC---Chh-hHHHh--hccccccccccc----------ccccchHHHHHHHHHhhccCCceEE--EeCCCCC
Confidence 9999986432 100 00000 0000 000000 01233445555555544 78998 356655
Q ss_pred CH----HHHHHH---HHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 234 TP----ADAAMM---MQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 234 t~----~d~~~~---l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
+. +.+..+ ++.|+.|+++||-+++++++... +|.+++..
T Consensus 293 ~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~ea~--~~~~~i~~ 338 (348)
T PRK09250 293 GEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAEGV--KLLNAIQD 338 (348)
T ss_pred CHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCcHHHH--HHHHHHHH
Confidence 33 335667 77899999999999999887633 35555554
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0012 Score=65.80 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=33.2
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEecc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALE 63 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~ 63 (310)
..+++++|+++ +.|.++++.++|.++.++|.-+++.-|
T Consensus 45 ~~~~l~~Pii~----a~M~~vt~~~ma~a~a~~GglGvi~~~ 82 (495)
T PTZ00314 45 RNIRLKIPIVS----SPMDTVTEHKMAIAMALMGGIGVIHNN 82 (495)
T ss_pred CCcccCCceee----cCccccccHHHHHHHHHCCCeEEecCC
Confidence 46789999998 789999999999999999999886544
|
|
| >PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART) | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0031 Score=57.19 Aligned_cols=192 Identities=22% Similarity=0.223 Sum_probs=97.5
Q ss_pred CCHHHHHHHHHcCCcEEEeccCCcccccccC-CCC--CC---CCHHHHHHH----Hhhc-CcceeeccccC-----cHHH
Q 021609 43 VTPEQARVAEEAGACAVMALERVPADIRSQG-GVA--RM---SDPQLIKEI----KQSV-TIPVMAKARIG-----HFVE 106 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~-G~~--~~---~~~~~i~~i----~~~~-~iPv~vk~~~~-----~~~~ 106 (310)
.+--.|+..+++|+|-|+.+|.-. .|..| ||- ++ ...+.+.++ --.+ ++||++...-. ....
T Consensus 23 GtGlsAk~ae~gGaDlI~~ynsGr--fR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPViaGv~atDP~~~~~~f 100 (268)
T PF09370_consen 23 GTGLSAKCAEKGGADLILIYNSGR--FRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVIAGVCATDPFRDMDRF 100 (268)
T ss_dssp SSHHHHHHHHHTT-SEEEE-HHHH--HHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EEEEE-TT-TT--HHHH
T ss_pred ccchhhHHHHhcCCCEEEEecchh--HhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEEEEecCcCCCCcHHHH
Confidence 344678899999999888887110 01111 110 11 112333333 2233 69999864321 2466
Q ss_pred HHHHHHcCCCEEEeCC----------------CCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEc-CC
Q 021609 107 AQILEAIGIDYVDESE----------------VLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTK-GE 168 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~----------------~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~-g~ 168 (310)
.+.+.+.|..+|..-. .+....-+++++. +..++..+.-+.|.+++++..++|+|++.+| |+
T Consensus 101 l~~lk~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~Gl 180 (268)
T PF09370_consen 101 LDELKELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGL 180 (268)
T ss_dssp HHHHHHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS
T ss_pred HHHHHHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCc
Confidence 7889999999996211 1222333455555 5567778888899999999999999999988 44
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHH-c-C
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQ-L-G 245 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~-~-G 245 (310)
+..+.+- + -+..+-++ + .....++.+..++. .++-+++ -.|-|.+|+|+..+++ + |
T Consensus 181 T~gG~~G-a-------------~~~~sl~~----a--~~~~~~i~~aa~~v~~dii~l~-hGGPI~~p~D~~~~l~~t~~ 239 (268)
T PF09370_consen 181 TTGGSIG-A-------------KTALSLEE----A--AERIQEIFDAARAVNPDIIVLC-HGGPIATPEDAQYVLRNTKG 239 (268)
T ss_dssp ------------------------S--HHH----H--HHHHHHHHHHHHCC-TT-EEEE-ECTTB-SHHHHHHHHHH-TT
T ss_pred cCCCCcC-c-------------cccCCHHH----H--HHHHHHHHHHHHHhCCCeEEEE-eCCCCCCHHHHHHHHhcCCC
Confidence 4333211 0 00000000 0 00001122222222 2344443 4778999999999995 3 5
Q ss_pred CCEEEEcccccc
Q 021609 246 CDGVFVGSGVFK 257 (310)
Q Consensus 246 adgV~VGsai~~ 257 (310)
++|..-||++=+
T Consensus 240 ~~Gf~G~Ss~ER 251 (268)
T PF09370_consen 240 IHGFIGASSMER 251 (268)
T ss_dssp EEEEEESTTTTH
T ss_pred CCEEecccchhh
Confidence 899999999886
|
Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C. |
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0012 Score=60.78 Aligned_cols=126 Identities=14% Similarity=0.083 Sum_probs=81.8
Q ss_pred Ccceee--ccccCcHHHHHHHHHcCCCEEE---eCCC--------------CCchhHHHHHHhcCCCCcEEEecCCHHHH
Q 021609 92 TIPVMA--KARIGHFVEAQILEAIGIDYVD---ESEV--------------LTPADEENHINKHNFRIPFVCGCRNLGEA 152 (310)
Q Consensus 92 ~iPv~v--k~~~~~~~~a~~~~~aGad~Vi---~~~~--------------~~~~~~~~~i~~~~~~i~~~v~~~t~~ea 152 (310)
++.+.. |...+.....+.+..+|..... .++. .+..+..+.+++..+...+.+++.|.+++
T Consensus 122 ~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea 201 (277)
T TIGR01334 122 MAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQA 201 (277)
T ss_pred CCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHH
Confidence 344444 3333444556677777776654 1222 02344555555544567799999999999
Q ss_pred HHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh-cCCCCEEEeCCCC
Q 021609 153 LRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ-LGRLPVVHFAAGG 231 (310)
Q Consensus 153 ~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~-~~~iPVi~iA~GG 231 (310)
..+.++|+|+|.+++.. ++++ .+.++.+++ ..++.+. ++||
T Consensus 202 ~ea~~~GaDiI~lDn~~--------------------------~e~l----------~~~v~~l~~~~~~~~le--asGG 243 (277)
T TIGR01334 202 LTVLQASPDILQLDKFT--------------------------PQQL----------HHLHERLKFFDHIPTLA--AAGG 243 (277)
T ss_pred HHHHHcCcCEEEECCCC--------------------------HHHH----------HHHHHHHhccCCCEEEE--EECC
Confidence 99999999999987531 1111 122333332 1233444 7999
Q ss_pred CCCHHHHHHHHHcCCCEEEEccccc
Q 021609 232 VATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 232 I~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
| +++++.+...+|+|.+++|+..+
T Consensus 244 I-~~~ni~~ya~~GvD~is~gal~~ 267 (277)
T TIGR01334 244 I-NPENIADYIEAGIDLFITSAPYY 267 (277)
T ss_pred C-CHHHHHHHHhcCCCEEEeCccee
Confidence 9 79999999999999999988644
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00029 Score=62.95 Aligned_cols=60 Identities=20% Similarity=0.465 Sum_probs=48.7
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
...++.++++++..++|+. ..|||++++++.++++.|||.|++|+..+. ||.. .+++.+.
T Consensus 59 ~~~~~~i~~i~~~~~~pv~--~~GgI~~~e~~~~~~~~Gad~vvigs~~l~--dp~~-~~~i~~~ 118 (234)
T cd04732 59 PVNLELIEEIVKAVGIPVQ--VGGGIRSLEDIERLLDLGVSRVIIGTAAVK--NPEL-VKELLKE 118 (234)
T ss_pred CCCHHHHHHHHHhcCCCEE--EeCCcCCHHHHHHHHHcCCCEEEECchHHh--ChHH-HHHHHHH
Confidence 3457788888887889998 689999999999999999999999999996 6653 3334443
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0062 Score=53.92 Aligned_cols=165 Identities=26% Similarity=0.338 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--Cc-----------HHHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--GH-----------FVEAQ 108 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~-----------~~~a~ 108 (310)
+.+++-+..++++||+.+ +||.... .||. .+++-.++.+++..++|+....|. ++ .++++
T Consensus 8 ven~~~l~~A~~~GAdRi-ELC~~La----~GG~--TPSyG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~ 80 (241)
T COG3142 8 VENVEGLLAAQAAGADRI-ELCDALA----EGGL--TPSYGVIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIR 80 (241)
T ss_pred ccCHhhHHHHHHcCCcee-ehhhccc----cCCC--CCCHHHHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHH
Confidence 356788899999999997 8863221 1333 456789999888899999887554 21 36778
Q ss_pred HHHHcCCCEEE----eCCC-CCchhHHHHHHh-cCCCCcE---EEecCCHHHHHH-HHHhCCCEEEEcCCCCCcchHHHH
Q 021609 109 ILEAIGIDYVD----ESEV-LTPADEENHINK-HNFRIPF---VCGCRNLGEALR-RIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 109 ~~~~aGad~Vi----~~~~-~~~~~~~~~i~~-~~~~i~~---~v~~~t~~ea~~-~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++|+++|+ .++. +..+-+.+++.. .+.++.+ +=.+.++.++.. +.++|+.-|-++|... + +
T Consensus 81 ~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~~--s---a- 154 (241)
T COG3142 81 LARELGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGKA--S---A- 154 (241)
T ss_pred HHHHcCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCcC--c---h-
Confidence 88999999995 2232 344444555544 2333221 112455655544 6788998777765321 1 0
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEE
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMM-QLGCDGVF 250 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~ 250 (310)
....+.++++-+. .++-|+ +.||| +++++..+. .+|+.-+-
T Consensus 155 ----------------------------~eg~~~l~~li~~a~gri~Im--~GaGV-~~~N~~~l~~~tg~~e~H 198 (241)
T COG3142 155 ----------------------------LEGLDLLKRLIEQAKGRIIIM--AGAGV-RAENIAELVLLTGVTEVH 198 (241)
T ss_pred ----------------------------hhhHHHHHHHHHHhcCCEEEE--eCCCC-CHHHHHHHHHhcCchhhh
Confidence 0112233333222 233344 79999 699999985 67776555
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0038 Score=62.38 Aligned_cols=40 Identities=33% Similarity=0.501 Sum_probs=33.7
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
++.++++++. .+++|+ .|+|.|++++..+.++|||+|.||
T Consensus 277 ~~~i~~ik~~~p~~~vi---~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 277 LEMIKYIKKTYPELDVI---GGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred HHHHHHHHHhCCCCcEE---EecCCCHHHHHHHHHcCcCEEEEC
Confidence 5678888875 357775 489999999999999999999886
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0012 Score=63.29 Aligned_cols=74 Identities=22% Similarity=0.246 Sum_probs=50.4
Q ss_pred CHHHHHHHHHhCCCEEEEcCCCC-CcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE
Q 021609 148 NLGEALRRIREGAAMIRTKGEAG-TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH 226 (310)
Q Consensus 148 t~~ea~~~~~~Gad~V~v~g~~~-~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~ 226 (310)
..+.+..+.++|+|+|.+|+++- +.+ ......+..+.++.+..++||+
T Consensus 143 ~~e~a~~l~eaGvd~I~vhgrt~~~~h------------------------------~~~~~~~~~i~~~ik~~~ipVI- 191 (368)
T PRK08649 143 AQELAPTVVEAGVDLFVIQGTVVSAEH------------------------------VSKEGEPLNLKEFIYELDVPVI- 191 (368)
T ss_pred HHHHHHHHHHCCCCEEEEeccchhhhc------------------------------cCCcCCHHHHHHHHHHCCCCEE-
Confidence 34556667789999999998631 110 0011122223334333689997
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
+ |+|.|++++.+++++|||+|++|..
T Consensus 192 -a-G~V~t~e~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 192 -V-GGCVTYTTALHLMRTGAAGVLVGIG 217 (368)
T ss_pred -E-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 4 8899999999999999999999943
|
|
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.8e-05 Score=70.42 Aligned_cols=49 Identities=33% Similarity=0.564 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
......+++..++||+ +.|||.+++.+.++++.| ||.|.+|++++. ||.
T Consensus 280 ~~~a~~ik~~~~~pvi--~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la--dPd 329 (341)
T PF00724_consen 280 LDLAEAIKKAVKIPVI--GVGGIRTPEQAEKALEEGKADLVAMGRPLLA--DPD 329 (341)
T ss_dssp HHHHHHHHHHHSSEEE--EESSTTHHHHHHHHHHTTSTSEEEESHHHHH---TT
T ss_pred hhhhhhhhhhcCceEE--EEeeecchhhhHHHHhcCCceEeeccHHHHh--Cch
Confidence 4566777777789998 679999999999999876 999999999998 664
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00094 Score=59.56 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=27.3
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
.+++|. ++|||+|.+|+.+++++||+-+-..+
T Consensus 178 ~~~~IK--asGGIrt~~~a~~~i~aGA~riGtS~ 209 (221)
T PRK00507 178 PRVGVK--ASGGIRTLEDALAMIEAGATRLGTSA 209 (221)
T ss_pred CCceEE--eeCCcCCHHHHHHHHHcCcceEccCc
Confidence 357887 89999999999999999999886543
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00022 Score=68.00 Aligned_cols=36 Identities=33% Similarity=0.700 Sum_probs=27.9
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
++.++ ++||+.|+.|+.+++.+|||+|.+|++.|-+
T Consensus 274 ~V~Li--~sGgl~t~~dv~kalaLGAD~v~igt~~liA 309 (368)
T PF01645_consen 274 RVSLI--ASGGLRTGDDVAKALALGADAVYIGTAALIA 309 (368)
T ss_dssp CSEEE--EESS--SHHHHHHHHHCT-SEEE-SHHHHHH
T ss_pred ceEEE--EeCCccCHHHHHHHHhcCCCeeEecchhhhh
Confidence 46666 7999999999999999999999999988743
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0074 Score=55.76 Aligned_cols=179 Identities=14% Similarity=0.178 Sum_probs=107.2
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.++.-|+++.+. ..+..+ . ......++...+..++||.+.+--+ .++.++.+.++|.
T Consensus 24 N~~n~e~~~avi~AAe~~~sPvIl~~~~~--~~~~~g-~--~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~Gf 98 (283)
T PRK07998 24 NTTNLETTISILNAIERSGLPNFIQIAPT--NAQLSG-Y--DYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGF 98 (283)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECcHh--HHhhCC-H--HHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCC
Confidence 3445543 445677788766665211 111111 1 0112355566677899999975433 4678889999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCCcE------E--E---------ecCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRIPF------V--C---------GCRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i~~------~--v---------~~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+.|- .+. ++.+ ++.++.... ++.+ + . .-++++++.+-. +.|+|.+.+.-.
T Consensus 99 tSVM~DgS~-l~~eeNi~~T~~vve~Ah~~--gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiG 175 (283)
T PRK07998 99 TSVMIDGAA-LPFEENIAFTKEAVDFAKSY--GVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIG 175 (283)
T ss_pred CEEEEeCCC-CCHHHHHHHHHHHHHHHHHc--CCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhcc
Confidence 9993 333 3322 233333332 3221 1 0 024677777754 568888765421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
.--| .+ +...-+++.++++++..++|+++=.+.|+ +.+++.+++.+|+.-
T Consensus 176 t~HG-----------------~Y------------~~p~l~~~~l~~I~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~K 225 (283)
T PRK07998 176 NVHG-----------------LE------------DIPRIDIPLLKRIAEVSPVPLVIHGGSGI-PPEILRSFVNYKVAK 225 (283)
T ss_pred cccc-----------------CC------------CCCCcCHHHHHHHHhhCCCCEEEeCCCCC-CHHHHHHHHHcCCcE
Confidence 1101 00 01123478899999888999885455565 458899999999999
Q ss_pred EEEcccccc
Q 021609 249 VFVGSGVFK 257 (310)
Q Consensus 249 V~VGsai~~ 257 (310)
|=++|.+..
T Consensus 226 iNi~Tel~~ 234 (283)
T PRK07998 226 VNIASDLRK 234 (283)
T ss_pred EEECHHHHH
Confidence 999998875
|
|
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0006 Score=60.92 Aligned_cols=59 Identities=17% Similarity=0.387 Sum_probs=48.5
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
..++.++++.+.+++|++ ++|||++.+|+.+++.+||+.|++|++++. +|.. .+++.+.
T Consensus 61 ~~~~~i~~i~~~~~~pv~--~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~--~~~~-l~ei~~~ 119 (233)
T PRK00748 61 VNLELIEAIVKAVDIPVQ--VGGGIRSLETVEALLDAGVSRVIIGTAAVK--NPEL-VKEACKK 119 (233)
T ss_pred ccHHHHHHHHHHCCCCEE--EcCCcCCHHHHHHHHHcCCCEEEECchHHh--CHHH-HHHHHHH
Confidence 457788888887889998 689999999999999999999999999997 5532 3334443
|
|
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.029 Score=49.49 Aligned_cols=183 Identities=19% Similarity=0.172 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC--c-ceeeccccCcHHHHHHHHHcCCCE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT--I-PVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--i-Pv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
+++++.|+.+.++|||++ +.+. ..|.+.-+++..+++.+.+. + +|.+-......+..+.+...|.|.
T Consensus 8 it~~eda~~~~~~GaD~iGfIf~---------~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~ 78 (207)
T PRK13958 8 FTTIKDVTAASQLPIDAIGFIHY---------EKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINT 78 (207)
T ss_pred CCcHHHHHHHHHcCCCEEEEecC---------CCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCE
Confidence 688999999999999987 2221 12333445788888877553 2 233322212234446777899999
Q ss_pred EEeCCCCCchhHHHHHHhcCCCCcEEEecC-CHHHHHHHH--HhCCCEEEEcCC----CCCcchHHHHHHHHhhccceEe
Q 021609 118 VDESEVLTPADEENHINKHNFRIPFVCGCR-NLGEALRRI--REGAAMIRTKGE----AGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~~ea~~~~--~~Gad~V~v~g~----~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
|-.+...+ .+..+.++...+.+.++-..+ +......+. ...+|++-+... +++|
T Consensus 79 vQLHG~e~-~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG------------------ 139 (207)
T PRK13958 79 IQLHGTES-IDFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGTG------------------ 139 (207)
T ss_pred EEECCCCC-HHHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcCC------------------
Confidence 95444333 444444543323333332221 112211111 223676655432 1222
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH--cCCCEEEEccccccC--CCHHHHHH
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ--LGCDGVFVGSGVFKS--GDPVKRAQ 266 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~--~GadgV~VGsai~~a--~dp~~~a~ 266 (310)
..-+|++++.+ .+.|++ .+||+ +|+++.+++. .+.+||=+.|.+=.. .|+.+ .+
T Consensus 140 ---------------~~~dw~~~~~~---~~~p~i--LAGGL-~peNV~~a~~~~~~p~gVDvsSGVE~~G~KD~~k-i~ 197 (207)
T PRK13958 140 ---------------QTYDWTILKHI---KDIPYL--IAGGI-NSENIQTVEQLKLSHQGYDIASGIETNGRKDINK-MT 197 (207)
T ss_pred ---------------cEeChHHhhhc---cCCCEE--EECCC-CHHHHHHHHhcCCCCCEEEcccccCCCCCCCHHH-HH
Confidence 12346666544 245887 47999 7999999874 588999999988642 36643 44
Q ss_pred HHHHHHhc
Q 021609 267 AIVRAVTH 274 (310)
Q Consensus 267 ~l~~~i~~ 274 (310)
+|++.+++
T Consensus 198 ~f~~~v~~ 205 (207)
T PRK13958 198 AIVNIVKG 205 (207)
T ss_pred HHHHHHHh
Confidence 57777654
|
|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00062 Score=58.20 Aligned_cols=94 Identities=21% Similarity=0.271 Sum_probs=64.6
Q ss_pred chhHHHHHHhcCCCC-cEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 126 PADEENHINKHNFRI-PFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i-~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+..+.+++..+.. .+.+++.+.+++..+.++|+|.|.+-... ++++
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~~--------------------------~~~~----- 114 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNMS--------------------------PEDL----- 114 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES-C--------------------------HHHH-----
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCcC--------------------------HHHH-----
Confidence 455566666654554 49999999999999999999999876431 1111
Q ss_pred ccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.++.. .++.+. ++||| +++++.++.++|+|.+.+|+..+.+
T Consensus 115 -----~~~v~~l~~~~~~v~ie--~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a 161 (169)
T PF01729_consen 115 -----KEAVEELRELNPRVKIE--ASGGI-TLENIAEYAKTGVDVISVGSLTHSA 161 (169)
T ss_dssp -----HHHHHHHHHHTTTSEEE--EESSS-STTTHHHHHHTT-SEEEECHHHHSB
T ss_pred -----HHHHHHHhhcCCcEEEE--EECCC-CHHHHHHHHhcCCCEEEcChhhcCC
Confidence 1223333222 234444 79999 7999999999999999999988764
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0026 Score=58.77 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=76.8
Q ss_pred ccccCcHHHHHHHHHcCCCEEE---eCCCC--------------CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCC
Q 021609 98 KARIGHFVEAQILEAIGIDYVD---ESEVL--------------TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGA 160 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi---~~~~~--------------~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Ga 160 (310)
|...+.....+.+..+|-.... .++.. +..+..+.+++..+...+.+++.|.++++.+.++|+
T Consensus 131 KT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~aga 210 (284)
T PRK06096 131 KAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQP 210 (284)
T ss_pred cCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCC
Confidence 3444444555666677765553 22222 233445555544455669999999999999999999
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~ 239 (310)
|+|.+.+.. ++++ .+.++.+++ ..++.+- ++||| |++++.
T Consensus 211 DiI~LDn~~--------------------------~e~l----------~~av~~~~~~~~~~~le--aSGGI-~~~ni~ 251 (284)
T PRK06096 211 DVLQLDKFS--------------------------PQQA----------TEIAQIAPSLAPHCTLS--LAGGI-NLNTLK 251 (284)
T ss_pred CEEEECCCC--------------------------HHHH----------HHHHHHhhccCCCeEEE--EECCC-CHHHHH
Confidence 999876532 1111 112222221 1244444 89999 799999
Q ss_pred HHHHcCCCEEEEccccccC
Q 021609 240 MMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 240 ~~l~~GadgV~VGsai~~a 258 (310)
+...+|+|.+.+|.- +.+
T Consensus 252 ~yA~tGvD~Is~gal-~~a 269 (284)
T PRK06096 252 NYADCGIRLFITSAP-YYA 269 (284)
T ss_pred HHHhcCCCEEEECcc-ccC
Confidence 999999999987764 554
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00078 Score=60.56 Aligned_cols=163 Identities=21% Similarity=0.253 Sum_probs=92.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh--cCcceeeccccC------c-----HHHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS--VTIPVMAKARIG------H-----FVEAQILEA 112 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~--~~iPv~vk~~~~------~-----~~~a~~~~~ 112 (310)
...+.+.+.|++++ .++|. + .....+.-.. ..++++++...+ . ...++.+.+
T Consensus 23 ~~~~~a~~~~~~av-~v~p~------~--------~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~ 87 (236)
T PF01791_consen 23 KLCREAIEYGFDAV-CVTPG------Y--------VKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR 87 (236)
T ss_dssp HHHHHHHHHTSSEE-EEEGG------G--------HHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH
T ss_pred HHHHHHHHhCCCEE-EECHH------H--------HHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHH
Confidence 45677788899987 33110 0 2223322222 245666654332 1 355788899
Q ss_pred cCCCEEE--eCC----CCC----chhHHHHHHh-cCCCCcEEEec-CCHHH------------HHH-HHHhCCCEEEEcC
Q 021609 113 IGIDYVD--ESE----VLT----PADEENHINK-HNFRIPFVCGC-RNLGE------------ALR-RIREGAAMIRTKG 167 (310)
Q Consensus 113 aGad~Vi--~~~----~~~----~~~~~~~i~~-~~~~i~~~v~~-~t~~e------------a~~-~~~~Gad~V~v~g 167 (310)
.|||.|. ..- .-. ..++....+. +..++++++.+ .+.++ +.+ +.++|+|+|++.-
T Consensus 88 ~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~t 167 (236)
T PF01791_consen 88 LGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTST 167 (236)
T ss_dssp TT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-
T ss_pred cCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecC
Confidence 9999994 111 111 2233333333 45667776662 22233 222 4678999999863
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCC----EEEeCCCCC------CCHHH
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLP----VVHFAAGGV------ATPAD 237 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iP----Vi~iA~GGI------~t~~d 237 (310)
....+.. ..+.+.++++.+...+| |. ++||| ++.++
T Consensus 168 g~~~~~t--------------------------------~~~~~~~~~~~~~~~~p~~~~Vk--~sGGi~~~~~~~~l~~ 213 (236)
T PF01791_consen 168 GKPVGAT--------------------------------PEDVELMRKAVEAAPVPGKVGVK--ASGGIDAEDFLRTLED 213 (236)
T ss_dssp SSSSCSH--------------------------------HHHHHHHHHHHHTHSSTTTSEEE--EESSSSHHHHHHSHHH
T ss_pred Ccccccc--------------------------------HHHHHHHHHHHHhcCCCcceEEE--EeCCCChHHHHHHHHH
Confidence 3111110 01133444444445678 87 68999 99999
Q ss_pred HHHHHHcCC--CEEEEcccccc
Q 021609 238 AAMMMQLGC--DGVFVGSGVFK 257 (310)
Q Consensus 238 ~~~~l~~Ga--dgV~VGsai~~ 257 (310)
+.+++++|| .|+..|+.|++
T Consensus 214 a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 214 ALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp HHHHHHTTHSEEEEEEHHHHHT
T ss_pred HHHHHHcCChhHHHHHHHHHHc
Confidence 999999999 99999999886
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00099 Score=60.18 Aligned_cols=60 Identities=15% Similarity=0.306 Sum_probs=49.5
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
....++++++.+...+|+. ++|||+|.+|+.+++.+||+-+++||++++ ||... +++.+.
T Consensus 61 ~~n~~~i~~i~~~~~~pv~--vgGGirs~edv~~~l~~Ga~kvviGs~~l~--~p~l~-~~i~~~ 120 (241)
T PRK14024 61 GSNRELLAEVVGKLDVKVE--LSGGIRDDESLEAALATGCARVNIGTAALE--NPEWC-ARVIAE 120 (241)
T ss_pred CccHHHHHHHHHHcCCCEE--EcCCCCCHHHHHHHHHCCCCEEEECchHhC--CHHHH-HHHHHH
Confidence 3446788899887889998 689999999999999999999999999997 77543 334443
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00096 Score=59.70 Aligned_cols=52 Identities=21% Similarity=0.475 Sum_probs=45.8
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
+.+.+.++++.+..++|++ ++|||++.+|+.+++..|++.|++|+++++ ||.
T Consensus 60 ~~n~~~~~~i~~~~~~pv~--~~ggi~~~~d~~~~~~~G~~~vilg~~~l~--~~~ 111 (232)
T TIGR03572 60 EPLFELISNLAEECFMPLT--VGGGIRSLEDAKKLLSLGADKVSINTAALE--NPD 111 (232)
T ss_pred CCCHHHHHHHHHhCCCCEE--EECCCCCHHHHHHHHHcCCCEEEEChhHhc--CHH
Confidence 4457788888887889998 689999999999999999999999999997 664
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.023 Score=56.00 Aligned_cols=181 Identities=18% Similarity=0.187 Sum_probs=103.8
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcc-eeeccccCcHHHHHHHHHcCCCEEE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIP-VMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iP-v~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+++++.|+.+.++|||++ +.+. ..|.+.-+++..+++.+.+.+. |.+-......+..+.+.+++.|.|-
T Consensus 264 it~~eda~~a~~~GaD~lGfIf~---------~~SpR~V~~~~a~~i~~~l~v~~VgVfv~~~~~~i~~i~~~~~lD~vQ 334 (454)
T PRK09427 264 LTRPQDAKAAYDAGAVYGGLIFV---------EKSPRYVSLEQAQEIIAAAPLRYVGVFRNADIEDIVDIAKQLSLAAVQ 334 (454)
T ss_pred CCCHHHHHHHHhCCCCEEeeEeC---------CCCCCCCCHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHcCCCEEE
Confidence 578899999999999987 2221 1122334577888887765421 2222111222344667889999985
Q ss_pred eCCCCCchhHHHHHHhc-CCCCcEE--EecCCHHHHHHHHHhCCCEEEEcCC-CCCcchHHHHHHHHhhccceEeecccC
Q 021609 120 ESEVLTPADEENHINKH-NFRIPFV--CGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~-~~~i~~~--v~~~t~~ea~~~~~~Gad~V~v~g~-~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
.+...++..+ +.++.. ..++.++ +.+.+..+. ....++|++-+... +++|.
T Consensus 335 LHG~e~~~~~-~~l~~~~~~~~~iikai~v~~~~~~--~~~~~~d~~LlDs~~GGtG~---------------------- 389 (454)
T PRK09427 335 LHGDEDQAYI-DALREALPKTCQIWKAISVGDTLPA--RDLQHVDRYLLDNGQGGTGQ---------------------- 389 (454)
T ss_pred eCCCCCHHHH-HHHHhhcCCCCeEEEEeecCchhhh--hhhcCCCEEEEcCCCCCCCC----------------------
Confidence 4444444433 344432 2222222 223222221 11235777665531 22331
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC---CCHHHHHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS---GDPVKRAQAIVRAV 272 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a---~dp~~~a~~l~~~i 272 (310)
.-+|.++... .+.|++ .+||+ +|+|+.+++..+.+||=|.|.+=.+ .|+. ..++|++.+
T Consensus 390 -----------~~DW~~l~~~---~~~p~i--LAGGL-~peNV~~ai~~~P~gVDVsSGVE~~pG~KD~~-Ki~~Fi~~v 451 (454)
T PRK09427 390 -----------TFDWSLLPGQ---SLDNVL--LAGGL-NPDNCQQAAQLGCAGLDFNSGVESAPGIKDAQ-KLASVFQTL 451 (454)
T ss_pred -----------ccChHHhhhc---ccCCEE--EECCC-CHHHHHHHHhcCCCEEEeCCcccCCCCCcCHH-HHHHHHHHH
Confidence 2235444321 256888 47999 7999999999999999999999754 4765 444577776
Q ss_pred hc
Q 021609 273 TH 274 (310)
Q Consensus 273 ~~ 274 (310)
+.
T Consensus 452 r~ 453 (454)
T PRK09427 452 RA 453 (454)
T ss_pred hh
Confidence 54
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0096 Score=54.61 Aligned_cols=179 Identities=19% Similarity=0.184 Sum_probs=99.6
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc--CCccc--ccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc------HHHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE--RVPAD--IRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH------FVEAQ 108 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~--~~~~~--~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~------~~~a~ 108 (310)
+..+-|+-.|+.++++|++++ .+. +.... ....+-..+......+++|.+.+++||++..-.|+ -..++
T Consensus 22 ~pg~~d~~sA~la~~aGF~al-~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~ 100 (289)
T COG2513 22 LPGAWDAGSALLAERAGFKAL-YLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVR 100 (289)
T ss_pred ecCCcCHHHHHHHHHcCCeEE-EeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHH
Confidence 334456678999999999998 332 00000 00001111122345777788889999999743332 35678
Q ss_pred HHHHcCCCEEEeCC--------------CCCchhHHHHHHh---cCCCCcEEEecCCH-------H----HHHHHHHhCC
Q 021609 109 ILEAIGIDYVDESE--------------VLTPADEENHINK---HNFRIPFVCGCRNL-------G----EALRRIREGA 160 (310)
Q Consensus 109 ~~~~aGad~Vi~~~--------------~~~~~~~~~~i~~---~~~~i~~~v~~~t~-------~----ea~~~~~~Ga 160 (310)
.++++|+.++.+-| ..+..+....++. ...+..+++-.+|- + .++...++|+
T Consensus 101 ~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGA 180 (289)
T COG2513 101 ELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGA 180 (289)
T ss_pred HHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCC
Confidence 89999999994211 1233444444433 11222333322221 2 2333346677
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATPADAA 239 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~~d~~ 239 (310)
|.|...+. .+.+.+..+++.+++|+.+ +-.+|-.-.-++.
T Consensus 181 D~if~~al---------------------------------------~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~ 221 (289)
T COG2513 181 DAIFPEAL---------------------------------------TDLEEIRAFAEAVPVPLPANITEFGKTPLLTVA 221 (289)
T ss_pred cEEccccC---------------------------------------CCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHH
Confidence 77765431 1244566666666645443 2345543335566
Q ss_pred HHHHcCCCEEEEcccccc
Q 021609 240 MMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 240 ~~l~~GadgV~VGsai~~ 257 (310)
++-++|..-|..|...++
T Consensus 222 ~L~~~Gv~~V~~~~~~~r 239 (289)
T COG2513 222 ELAELGVKRVSYGLTAFR 239 (289)
T ss_pred HHHhcCceEEEECcHHHH
Confidence 667899999999988886
|
|
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0033 Score=58.63 Aligned_cols=111 Identities=20% Similarity=0.120 Sum_probs=76.3
Q ss_pred HHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC-
Q 021609 46 EQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~- 122 (310)
++++.+.+.|+++| +.++ |++.. + ...+.++++++.+++|+++|.. ...++++.+.++|+|+|..+.
T Consensus 133 ~~i~~~~~~g~~~i~l~~~~p~~~~-~--------~~~~~i~~l~~~~~~pvivK~v-~s~~~a~~a~~~G~d~I~v~~~ 202 (299)
T cd02809 133 DLLRRAEAAGYKALVLTVDTPVLGR-R--------LTWDDLAWLRSQWKGPLILKGI-LTPEDALRAVDAGADGIVVSNH 202 (299)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCC-C--------CCHHHHHHHHHhcCCCEEEeec-CCHHHHHHHHHCCCCEEEEcCC
Confidence 46677788999987 3333 33211 1 2368999999999999999965 335789999999999996321
Q ss_pred -------CCCchhHHHHHHh-cCCCCcEEEe--cCCHHHHHHHHHhCCCEEEEc
Q 021609 123 -------VLTPADEENHINK-HNFRIPFVCG--CRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 123 -------~~~~~~~~~~i~~-~~~~i~~~v~--~~t~~ea~~~~~~Gad~V~v~ 166 (310)
.....+....+.+ ...+++++++ +++..++.++..+|||.|.+.
T Consensus 203 gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 203 GGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIG 256 (299)
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 1122233333333 2224666664 899999999999999999875
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.005 Score=54.23 Aligned_cols=103 Identities=18% Similarity=0.252 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCCEEEeC-CCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHH
Q 021609 104 FVEAQILEAIGIDYVDES-EVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~~-~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~ 181 (310)
.+.++.+.+.|++.+-.+ ......+.++.++++.+++.++++ +.|.++++.+.++|++++. .+ ..
T Consensus 23 ~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fiv-sP-~~----------- 89 (204)
T TIGR01182 23 LPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIV-SP-GL----------- 89 (204)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEE-CC-CC-----------
Confidence 355788899999999533 333445556666655557888876 8899999999999999984 22 11
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+.+.++..++ .++|++ =|+.|+.++..++++||+.|=+
T Consensus 90 ---------------------------~~~v~~~~~~-~~i~~i----PG~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 90 ---------------------------TPELAKHAQD-HGIPII----PGVATPSEIMLALELGITALKL 127 (204)
T ss_pred ---------------------------CHHHHHHHHH-cCCcEE----CCCCCHHHHHHHHHCCCCEEEE
Confidence 1223333333 578887 3888999999999999998853
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0016 Score=57.66 Aligned_cols=29 Identities=34% Similarity=0.489 Sum_probs=25.4
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
++||. ++|||+|.+++.+++++|++-+-.
T Consensus 175 ~v~IK--aaGGirt~~~a~~~i~aGa~riGt 203 (211)
T TIGR00126 175 TIGVK--ASGGVRTAEDAIAMIEAGASRIGA 203 (211)
T ss_pred CCeEE--EeCCCCCHHHHHHHHHHhhHHhCc
Confidence 58888 799999999999999999987643
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00049 Score=61.70 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=44.8
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
+.+++++++.+..++|+. ++|||++.+|+.+++.+|+++|++|++.+ ||.
T Consensus 60 ~n~~~i~~i~~~~~~pv~--~gGGIrs~edv~~l~~~G~~~vivGtaa~---~~~ 109 (228)
T PRK04128 60 KNLDVVKNIIRETGLKVQ--VGGGLRTYESIKDAYEIGVENVIIGTKAF---DLE 109 (228)
T ss_pred chHHHHHHHHhhCCCCEE--EcCCCCCHHHHHHHHHCCCCEEEECchhc---CHH
Confidence 457888898887889998 79999999999999999999999999998 464
|
|
| >cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.01 Score=52.75 Aligned_cols=43 Identities=23% Similarity=0.446 Sum_probs=34.9
Q ss_pred CCCEEEeCCCCCCCHH----------HHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 021609 221 RLPVVHFAAGGVATPA----------DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQA 267 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~----------d~~~~l~~GadgV~VGsai~~a~dp~~~a~~ 267 (310)
+.+++ ..||+ +. +..+++..|++.+++||+|++++||...+++
T Consensus 163 ~~~~l---tPGI~-~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~ 215 (216)
T cd04725 163 DFLIL---TPGIG-AQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA 215 (216)
T ss_pred CCeEE---cCCcC-CCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence 45543 68986 44 6777789999999999999999999887764
|
In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0097 Score=52.79 Aligned_cols=124 Identities=13% Similarity=0.108 Sum_probs=81.8
Q ss_pred HHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeCC-CCCchhHHHHHHh-cC--CCCcEEEe-cCCHHHHHHHH
Q 021609 83 LIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDESE-VLTPADEENHINK-HN--FRIPFVCG-CRNLGEALRRI 156 (310)
Q Consensus 83 ~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~~-~~~~~~~~~~i~~-~~--~~i~~~v~-~~t~~ea~~~~ 156 (310)
.++.+.+.-=+||+...... ....++.+.+.|+..+-.+. .....+.++.+++ ++ +++.++++ +.|.++++++.
T Consensus 6 ~~~~l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~ 85 (213)
T PRK06552 6 ILTKLKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAI 85 (213)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHH
Confidence 34555544345555433222 13556888899999995333 2334455555554 32 35778776 78999999999
Q ss_pred HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHH
Q 021609 157 REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA 236 (310)
Q Consensus 157 ~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~ 236 (310)
++|++|+.. + .. ..+.++..+ ..++|++ =|+.|++
T Consensus 86 ~aGA~Fivs-P-~~--------------------------------------~~~v~~~~~-~~~i~~i----PG~~T~~ 120 (213)
T PRK06552 86 LAGAQFIVS-P-SF--------------------------------------NRETAKICN-LYQIPYL----PGCMTVT 120 (213)
T ss_pred HcCCCEEEC-C-CC--------------------------------------CHHHHHHHH-HcCCCEE----CCcCCHH
Confidence 999999862 1 11 122333333 3578987 4888999
Q ss_pred HHHHHHHcCCCEEEE
Q 021609 237 DAAMMMQLGCDGVFV 251 (310)
Q Consensus 237 d~~~~l~~GadgV~V 251 (310)
++.++++.|+|.+-+
T Consensus 121 E~~~A~~~Gad~vkl 135 (213)
T PRK06552 121 EIVTALEAGSEIVKL 135 (213)
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999997
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=58.96 Aligned_cols=60 Identities=22% Similarity=0.429 Sum_probs=48.4
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
...+.++++++..++|++ .+|||++.+|+..++.+|||.|++|+..++ +|.. .+++.+.+
T Consensus 63 ~~~~~i~~i~~~~~~~l~--v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~--~~~~-~~~i~~~~ 122 (241)
T PRK13585 63 KNAEAIEKIIEAVGVPVQ--LGGGIRSAEDAASLLDLGVDRVILGTAAVE--NPEI-VRELSEEF 122 (241)
T ss_pred ccHHHHHHHHHHcCCcEE--EcCCcCCHHHHHHHHHcCCCEEEEChHHhh--ChHH-HHHHHHHh
Confidence 446778888887789998 589999999999999999999999999986 6643 33344443
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0027 Score=60.87 Aligned_cols=73 Identities=23% Similarity=0.273 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeC
Q 021609 149 LGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFA 228 (310)
Q Consensus 149 ~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA 228 (310)
.+-+..+.++|+|+|.+|++.-... | .....++..+.++.+..++||+ +
T Consensus 145 ~e~a~~l~eAGad~I~ihgrt~~q~----------------------------~-~sg~~~p~~l~~~i~~~~IPVI--~ 193 (369)
T TIGR01304 145 REIAPIVVKAGADLLVIQGTLVSAE----------------------------H-VSTSGEPLNLKEFIGELDVPVI--A 193 (369)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhh----------------------------c-cCCCCCHHHHHHHHHHCCCCEE--E
Confidence 3555667799999999998641100 0 0011234445555555789998 3
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 229 AGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
|+|.|.+++.+++++|||+|++|+
T Consensus 194 -G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 194 -GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred -eCCCCHHHHHHHHHcCCCEEEECC
Confidence 899999999999999999999885
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0018 Score=59.05 Aligned_cols=61 Identities=20% Similarity=0.361 Sum_probs=49.9
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
++.+++++++.+..++|+. ++|||++.+|+.+++..|+++|++|+++++ +|. ..+++.+.+
T Consensus 60 ~~n~~~i~~i~~~~~~pv~--~gGGi~s~~d~~~l~~~G~~~vvigs~~~~--~~~-~~~~~~~~~ 120 (258)
T PRK01033 60 EPNYELIENLASECFMPLC--YGGGIKTLEQAKKIFSLGVEKVSINTAALE--DPD-LITEAAERF 120 (258)
T ss_pred cccHHHHHHHHHhCCCCEE--ECCCCCCHHHHHHHHHCCCCEEEEChHHhc--CHH-HHHHHHHHh
Confidence 4568889999887889998 799999999999999999999999999996 664 333344443
|
|
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.01 Score=53.00 Aligned_cols=126 Identities=16% Similarity=0.132 Sum_probs=81.7
Q ss_pred HHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeCCC-CCchhHHHHH----HhcCCCCcEEEe-cCCHHHHH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDESEV-LTPADEENHI----NKHNFRIPFVCG-CRNLGEAL 153 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~~~-~~~~~~~~~i----~~~~~~i~~~v~-~~t~~ea~ 153 (310)
.+.++.+.+.-=+||+...... -.+.++.+.+.|...+-.+.. ....+.++.+ .+..+++.++++ +.|.++++
T Consensus 6 ~~~~~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~ 85 (222)
T PRK07114 6 IAVLTAMKATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAA 85 (222)
T ss_pred HHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHH
Confidence 4555666654446666544322 135567889999999953332 2223333333 233456778776 78999999
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCC
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVA 233 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~ 233 (310)
.+.++|++|+..=+. +.++++..++ .++|++ =|+.
T Consensus 86 ~a~~aGA~FiVsP~~----------------------------------------~~~v~~~~~~-~~i~~i----PG~~ 120 (222)
T PRK07114 86 LYIQLGANFIVTPLF----------------------------------------NPDIAKVCNR-RKVPYS----PGCG 120 (222)
T ss_pred HHHHcCCCEEECCCC----------------------------------------CHHHHHHHHH-cCCCEe----CCCC
Confidence 999999999863111 1223333333 578887 5888
Q ss_pred CHHHHHHHHHcCCCEEEE
Q 021609 234 TPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 234 t~~d~~~~l~~GadgV~V 251 (310)
|+.++.+++++|++.|=+
T Consensus 121 TpsEi~~A~~~Ga~~vKl 138 (222)
T PRK07114 121 SLSEIGYAEELGCEIVKL 138 (222)
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 999999999999998854
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.011 Score=52.51 Aligned_cols=124 Identities=20% Similarity=0.280 Sum_probs=82.6
Q ss_pred HHHHHHhhcCcceeeccccCc-HHHHHHHHHcCCCEEEeCCC-CCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhC
Q 021609 83 LIKEIKQSVTIPVMAKARIGH-FVEAQILEAIGIDYVDESEV-LTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREG 159 (310)
Q Consensus 83 ~i~~i~~~~~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~~~~-~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~G 159 (310)
.++.+.+.-=+||+....... ...++.+.+.|++.+-.+.. ....+.++.+++..+++.++++ +.+.++++.+.++|
T Consensus 8 ~~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aG 87 (212)
T PRK05718 8 IEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAG 87 (212)
T ss_pred HHHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcC
Confidence 344555444466664443221 35568888899999953322 2334455555554567878876 78889999999999
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
++++..-+. +.+.++...+ ..+|++ =|+.|+.++.
T Consensus 88 A~FivsP~~----------------------------------------~~~vi~~a~~-~~i~~i----PG~~TptEi~ 122 (212)
T PRK05718 88 AQFIVSPGL----------------------------------------TPPLLKAAQE-GPIPLI----PGVSTPSELM 122 (212)
T ss_pred CCEEECCCC----------------------------------------CHHHHHHHHH-cCCCEe----CCCCCHHHHH
Confidence 999975321 0123333333 567886 4888999999
Q ss_pred HHHHcCCCEEEE
Q 021609 240 MMMQLGCDGVFV 251 (310)
Q Consensus 240 ~~l~~GadgV~V 251 (310)
+++++|++.|-+
T Consensus 123 ~a~~~Ga~~vKl 134 (212)
T PRK05718 123 LGMELGLRTFKF 134 (212)
T ss_pred HHHHCCCCEEEE
Confidence 999999999987
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0022 Score=59.09 Aligned_cols=94 Identities=17% Similarity=0.280 Sum_probs=65.6
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+..+.++...+...+.+.+.+.+++..+.++|+|+|.+.+.. ++++
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~~leea~~a~~agaDiI~LDn~~--------------------------~e~l------ 216 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAGADIIMLDNMT--------------------------PEEI------ 216 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCcCEEEECCCC--------------------------HHHH------
Confidence 33445555555556779999999999999999999999876431 1111
Q ss_pred cCCcHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.+..+++. .++.+. ++||| +++++.+..++|+|.+.+|+....+
T Consensus 217 ----~~~v~~l~~~~~~~~~~le--aSGGI-~~~ni~~yA~tGvD~Is~galt~sa 265 (278)
T PRK08385 217 ----REVIEALKREGLRERVKIE--VSGGI-TPENIEEYAKLDVDVISLGALTHSV 265 (278)
T ss_pred ----HHHHHHHHhcCcCCCEEEE--EECCC-CHHHHHHHHHcCCCEEEeChhhcCC
Confidence 1122223221 234444 89999 7999999999999999999877643
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0076 Score=52.93 Aligned_cols=102 Identities=16% Similarity=0.178 Sum_probs=72.9
Q ss_pred HHHHHHHHcCCCEEEeCC-CCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESE-VLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR 182 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~-~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r 182 (310)
+.++.+.+.|...+-.+. .....+.++.++++.+++.++++ +.|.++++++.++|++++.. + ..
T Consensus 20 ~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS-P-~~------------ 85 (201)
T PRK06015 20 PLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS-P-GT------------ 85 (201)
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC-C-CC------------
Confidence 556888999999995333 33344555666554567888876 78999999999999999863 1 11
Q ss_pred hhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+.+.++..++ .++|++ =|+.||.++..++++|++.|=+
T Consensus 86 --------------------------~~~vi~~a~~-~~i~~i----PG~~TptEi~~A~~~Ga~~vK~ 123 (201)
T PRK06015 86 --------------------------TQELLAAAND-SDVPLL----PGAATPSEVMALREEGYTVLKF 123 (201)
T ss_pred --------------------------CHHHHHHHHH-cCCCEe----CCCCCHHHHHHHHHCCCCEEEE
Confidence 1223433333 578887 5888999999999999998853
|
|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0025 Score=58.97 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=65.6
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+.++.+++..+...+.+.+.|.+|+..+.++|+|+|.+-+.. ++++
T Consensus 186 i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~gaDiI~LDnm~--------------------------~e~v------ 233 (289)
T PRK07896 186 VVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAEGAELVLLDNFP--------------------------VWQT------ 233 (289)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHcCCCEEEeCCCC--------------------------HHHH------
Confidence 34455555554455779999999999999999999999876431 1111
Q ss_pred cCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.++.. .++.+. ++||| |++++.+..++|+|.+.+|+....+
T Consensus 234 ----k~av~~~~~~~~~v~ie--aSGGI-~~~ni~~yA~tGvD~Is~galt~sa 280 (289)
T PRK07896 234 ----QEAVQRRDARAPTVLLE--SSGGL-TLDTAAAYAETGVDYLAVGALTHSV 280 (289)
T ss_pred ----HHHHHHHhccCCCEEEE--EECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 1122222221 234444 89999 7999999999999999999877653
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.046 Score=50.82 Aligned_cols=174 Identities=16% Similarity=0.217 Sum_probs=97.9
Q ss_pred ccCCCHHHHHHHHHcCCcEEEecc---------CCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--Cc----H
Q 021609 40 MDVVTPEQARVAEEAGACAVMALE---------RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--GH----F 104 (310)
Q Consensus 40 ~~~~~~~~A~~~~~~Ga~~i~~L~---------~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~----~ 104 (310)
..+-|.--|+.++++|++++ .+. ..| |. +-..+....+.+++|.+.+++||++..-. +. .
T Consensus 22 p~~~Da~SAri~e~~Gf~ai-~~Sg~~~a~~~lG~P-D~---g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~ 96 (292)
T PRK11320 22 VGTINAYHALLAERAGFKAI-YLSGGGVAAASLGLP-DL---GITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIA 96 (292)
T ss_pred cCCCCHHHHHHHHHcCCCEE-EeCHHHHHhHhcCCC-CC---CCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHH
Confidence 34456677899999999987 221 111 10 00011112356666777889999996322 22 3
Q ss_pred HHHHHHHHcCCCEEEeCCC--------------CCchhHHHHHHh-----cCCCCcEEEecC-----CHHHH----HHHH
Q 021609 105 VEAQILEAIGIDYVDESEV--------------LTPADEENHINK-----HNFRIPFVCGCR-----NLGEA----LRRI 156 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~--------------~~~~~~~~~i~~-----~~~~i~~~v~~~-----t~~ea----~~~~ 156 (310)
..++.+.++||-++.+-|. .+..+....++. .+.++.+++-+. ..+|+ ++..
T Consensus 97 r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~ 176 (292)
T PRK11320 97 RTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYV 176 (292)
T ss_pred HHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHH
Confidence 5578899999999953221 233344433332 122333333221 13333 3334
Q ss_pred HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCH
Q 021609 157 REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP 235 (310)
Q Consensus 157 ~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~ 235 (310)
++|||.|.+.+.. +.+.++++.+..+.|+++ ...+|-.-.
T Consensus 177 eAGAD~ifi~~~~---------------------------------------~~~~i~~~~~~~~~Pl~~n~~~~~~~p~ 217 (292)
T PRK11320 177 EAGADMIFPEAMT---------------------------------------ELEMYRRFADAVKVPILANITEFGATPL 217 (292)
T ss_pred HcCCCEEEecCCC---------------------------------------CHHHHHHHHHhcCCCEEEEeccCCCCCC
Confidence 6788888776421 234455565556678843 134553211
Q ss_pred HHHHHHHHcCCCEEEEcccccc
Q 021609 236 ADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 236 ~d~~~~l~~GadgV~VGsai~~ 257 (310)
-++.++.++|+.-|..|...++
T Consensus 218 ~s~~~L~~lGv~~v~~~~~~~~ 239 (292)
T PRK11320 218 FTTEELASAGVAMVLYPLSAFR 239 (292)
T ss_pred CCHHHHHHcCCcEEEEChHHHH
Confidence 3566667899999999988876
|
|
| >COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0035 Score=56.60 Aligned_cols=47 Identities=28% Similarity=0.469 Sum_probs=36.7
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 220 GRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
.++||+ ..|+|+ ++++.+++ +.++||++||++-++++|+....+.+.
T Consensus 201 ~~v~Il--YGGSV~-~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~~~~ 248 (251)
T COG0149 201 EKVRIL--YGGSVK-PGNAAELAAQPDIDGALVGGASLKADDFLAILEALA 248 (251)
T ss_pred CCeEEE--EeCCcC-hhHHHHHhcCCCCCeEEEcceeecchhHHHHHHHHh
Confidence 368888 579995 55555555 789999999999999989877666543
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0025 Score=55.97 Aligned_cols=28 Identities=43% Similarity=0.662 Sum_probs=24.6
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
.++||. ++|||+|.+++.+++.+|++-+
T Consensus 173 ~~v~ik--~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 173 GRVGVK--AAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred CCceEE--EeCCCCCHHHHHHHHHhChhhc
Confidence 468888 7899999999999999999855
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00024 Score=63.41 Aligned_cols=46 Identities=26% Similarity=0.609 Sum_probs=37.5
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.+..+..+...++|++ -+|||+|.+++.++.++|||.|++|++|.+
T Consensus 171 ~~v~~~~~~~~~~~Li--vGGGIrs~e~A~~~~~aGAD~IVvGn~iee 216 (230)
T PF01884_consen 171 EEVIAAVKKLSDIPLI--VGGGIRSPEQAREMAEAGADTIVVGNAIEE 216 (230)
T ss_dssp HHHHHHHHHSSSSEEE--EESS--SHHHHHHHHCTTSSEEEESCHHHH
T ss_pred HHHHHHHHhcCCccEE--EeCCcCCHHHHHHHHHCCCCEEEECCEEEE
Confidence 4455555666789998 589999999999999999999999999997
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.048 Score=49.33 Aligned_cols=178 Identities=20% Similarity=0.207 Sum_probs=100.7
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccC--Ccc--cccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc------HHHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALER--VPA--DIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH------FVEAQ 108 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~--~~~--~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~------~~~a~ 108 (310)
+..+-|+-.|+.++++|++++ .+.. ... .....+...+......++.|.+.+++|+++....++ ...++
T Consensus 13 ~~~~~D~~sA~~~e~~G~~ai-~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~ 91 (243)
T cd00377 13 LPGAWDALSARLAERAGFKAI-YTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVR 91 (243)
T ss_pred ecCCCCHHHHHHHHHcCCCEE-EeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHH
Confidence 334456678999999999987 2210 000 000000000111235666677788999999755432 23467
Q ss_pred HHHHcCCCEEEeCC--------------CCCchhHHHHHHh-----cC-CCCcEEEe-----c--CCHHHHH----HHHH
Q 021609 109 ILEAIGIDYVDESE--------------VLTPADEENHINK-----HN-FRIPFVCG-----C--RNLGEAL----RRIR 157 (310)
Q Consensus 109 ~~~~aGad~Vi~~~--------------~~~~~~~~~~i~~-----~~-~~i~~~v~-----~--~t~~ea~----~~~~ 157 (310)
.+.++|+++|.+-+ .++.++..+.++. .+ .++.+++- . ...+++. ...+
T Consensus 92 ~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~ 171 (243)
T cd00377 92 ELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAE 171 (243)
T ss_pred HHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHH
Confidence 77889999995311 1244444443332 12 24555544 2 3344433 3456
Q ss_pred hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHH
Q 021609 158 EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD 237 (310)
Q Consensus 158 ~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d 237 (310)
+|+|.+.+.+.. +.+.++.+.+..+.|+++....+-. .-+
T Consensus 172 AGAD~v~v~~~~---------------------------------------~~~~~~~~~~~~~~Pl~~~~~~~~~-~~~ 211 (243)
T cd00377 172 AGADGIFVEGLK---------------------------------------DPEEIRAFAEAPDVPLNVNMTPGGN-LLT 211 (243)
T ss_pred cCCCEEEeCCCC---------------------------------------CHHHHHHHHhcCCCCEEEEecCCCC-CCC
Confidence 788888876431 2345666666678898875333321 123
Q ss_pred HHHHHHcCCCEEEEcccccc
Q 021609 238 AAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~~ 257 (310)
..++.++|+.-+..|..+++
T Consensus 212 ~~~l~~lG~~~v~~~~~~~~ 231 (243)
T cd00377 212 VAELAELGVRRVSYGLALLR 231 (243)
T ss_pred HHHHHHCCCeEEEEChHHHH
Confidence 44456789999999988875
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >KOG2333 consensus Uncharacterized conserved protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0034 Score=61.01 Aligned_cols=136 Identities=21% Similarity=0.325 Sum_probs=86.2
Q ss_pred cCCcEEEecc-CCcc--cccccCCCCCCCCHHHHHHHHhh----c-CcceeeccccCcHHHHHHHHHcCCCEEEeCCCCC
Q 021609 54 AGACAVMALE-RVPA--DIRSQGGVARMSDPQLIKEIKQS----V-TIPVMAKARIGHFVEAQILEAIGIDYVDESEVLT 125 (310)
Q Consensus 54 ~Ga~~i~~L~-~~~~--~~~~~~G~~~~~~~~~i~~i~~~----~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~ 125 (310)
.-+|. ++|| .+|- ..+..+|++++..+..+.++-+. . .+|+.+|.+.+..+.. . -
T Consensus 345 ~~VDF-IDlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg~--------~--------~ 407 (614)
T KOG2333|consen 345 CDVDF-IDLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEGH--------P--------V 407 (614)
T ss_pred cceee-eeccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccCc--------h--------h
Confidence 44554 5898 4544 44777899988877666655332 2 5799999998742210 0 0
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHH-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRI-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+++. +.. +-|++.|++||+.-+. . |
T Consensus 408 a~~Li~----------------------~i~newg~savTlHGRSRqQ-------------------R---------Y-- 435 (614)
T KOG2333|consen 408 AHELIP----------------------RIVNEWGASAVTLHGRSRQQ-------------------R---------Y-- 435 (614)
T ss_pred HHHHHH----------------------HHhhccCcceEEecCchhhh-------------------h---------h--
Confidence 111111 122 4578899999974211 0 1
Q ss_pred ccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHH-HcC-CCEEEEccccccCCCHH
Q 021609 205 KIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMM-QLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l-~~G-adgV~VGsai~~a~dp~ 262 (310)
.-.++|+.+.++.+.. .+|++ .+|.|.|.+|-.+-+ ..+ .|+|||++.-+- .||
T Consensus 436 TK~AnWdYi~e~a~~ak~~l~li--GNGDi~S~eDw~~~~~~~p~v~svMIaRGALI--KPW 493 (614)
T KOG2333|consen 436 TKSANWDYIEECADKAKSALPLI--GNGDILSWEDWYERLNQNPNVDSVMIARGALI--KPW 493 (614)
T ss_pred hcccChHHHHHHHHhcccCceeE--ecCccccHHHHHHHhhcCCCcceEEeeccccc--cch
Confidence 1245688888876543 38888 899999999966655 444 899999986654 477
|
|
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0041 Score=57.55 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=66.2
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+..+.+++..+...+-+.+.|.+++..+.++|+|+|.+.+.. ++++
T Consensus 192 i~~av~~~r~~~~~~kIeVEvetleea~eA~~aGaDiImLDnms--------------------------pe~l------ 239 (294)
T PRK06978 192 VGAALDAAFALNAGVPVQIEVETLAQLETALAHGAQSVLLDNFT--------------------------LDMM------ 239 (294)
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH------
Confidence 45566666654445678899999999999999999999876531 1111
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+.++.++. ++.+- ++||| |++++.+..++|+|.+.+|+....++
T Consensus 240 ----~~av~~~~~--~~~lE--aSGGI-t~~ni~~yA~tGVD~IS~galthsa~ 284 (294)
T PRK06978 240 ----REAVRVTAG--RAVLE--VSGGV-NFDTVRAFAETGVDRISIGALTKDVR 284 (294)
T ss_pred ----HHHHHhhcC--CeEEE--EECCC-CHHHHHHHHhcCCCEEEeCccccCCc
Confidence 112222222 33444 89999 79999999999999999998777643
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0052 Score=53.79 Aligned_cols=119 Identities=19% Similarity=0.217 Sum_probs=74.9
Q ss_pred HHhhcCcceeeccccCc-HHHHHHHHHcCCCEEEeC-CCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEE
Q 021609 87 IKQSVTIPVMAKARIGH-FVEAQILEAIGIDYVDES-EVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMI 163 (310)
Q Consensus 87 i~~~~~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~~-~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V 163 (310)
+++.-=+||+....... .+.++.+.+.|...+-.+ ......+.++.++++.+++.++++ +.|.++++++.++|++++
T Consensus 5 l~~~~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~Fi 84 (196)
T PF01081_consen 5 LKENKIIAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFI 84 (196)
T ss_dssp HHHHSEEEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEE
T ss_pred HhhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEE
Confidence 33333356654433222 356788999999998433 333445666666665578888886 789999999999999998
Q ss_pred EEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH
Q 021609 164 RTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ 243 (310)
Q Consensus 164 ~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~ 243 (310)
..=+ . +.+.++..++ .++|++ =|+.|+.++.++++
T Consensus 85 vSP~--~--------------------------------------~~~v~~~~~~-~~i~~i----PG~~TptEi~~A~~ 119 (196)
T PF01081_consen 85 VSPG--F--------------------------------------DPEVIEYARE-YGIPYI----PGVMTPTEIMQALE 119 (196)
T ss_dssp EESS------------------------------------------HHHHHHHHH-HTSEEE----EEESSHHHHHHHHH
T ss_pred ECCC--C--------------------------------------CHHHHHHHHH-cCCccc----CCcCCHHHHHHHHH
Confidence 6421 1 1223333333 468887 47889999999999
Q ss_pred cCCCEEE
Q 021609 244 LGCDGVF 250 (310)
Q Consensus 244 ~GadgV~ 250 (310)
+||+.|=
T Consensus 120 ~G~~~vK 126 (196)
T PF01081_consen 120 AGADIVK 126 (196)
T ss_dssp TT-SEEE
T ss_pred CCCCEEE
Confidence 9999985
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0027 Score=56.69 Aligned_cols=60 Identities=18% Similarity=0.439 Sum_probs=48.5
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.+++.++++.+..++|+. ..|||++.+|+.+++.+|||.|++|+.+++ ||.. ..++.+.+
T Consensus 59 ~~~~~i~~i~~~~~~pi~--~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~--d~~~-~~~~~~~~ 118 (230)
T TIGR00007 59 VNLPVIKKIVRETGVPVQ--VGGGIRSLEDVEKLLDLGVDRVIIGTAAVE--NPDL-VKELLKEY 118 (230)
T ss_pred CcHHHHHHHHHhcCCCEE--EeCCcCCHHHHHHHHHcCCCEEEEChHHhh--CHHH-HHHHHHHh
Confidence 357788888887889998 589999999999999999999999999997 6643 23344444
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0043 Score=60.07 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=43.9
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.+.+.+++..++||+ +.||| +++++.++++.| ||.|.+|++++. ||. |.+.+++..
T Consensus 303 ~~a~~ik~~v~~pvi--~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia--dPd-----l~~k~~~g~ 359 (391)
T PLN02411 303 QLMRTLRRAYQGTFM--CSGGF-TRELGMQAVQQGDADLVSYGRLFIS--NPD-----LVLRFKLNA 359 (391)
T ss_pred HHHHHHHHHcCCCEE--EECCC-CHHHHHHHHHcCCCCEEEECHHHHh--Ccc-----HHHHHhcCC
Confidence 355677887889998 67999 689999999888 999999999998 665 444444443
|
|
| >TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0086 Score=53.01 Aligned_cols=112 Identities=21% Similarity=0.353 Sum_probs=62.2
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc-eEeecccChhH----------HHHhhh---cc-----CCcHHHHH
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD-IRVLRNMDDDE----------VFTFAK---KI-----AAPYDLVM 214 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~----------~~~~~~---~~-----~~~~~~i~ 214 (310)
...+.|+|++.+|+..+...+..+++..++.-.. +-+...++++. ++..++ .. ....+.+.
T Consensus 71 ~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v~~~~~~~ 150 (213)
T TIGR01740 71 SKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPVCSAEEAK 150 (213)
T ss_pred HHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEEeCHHHHH
Confidence 3567899999999865543344455544432211 22222222211 111111 11 11123355
Q ss_pred HHhhcCC-CCEEEeCCCCCCCHH--H--------HHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 215 QTKQLGR-LPVVHFAAGGVATPA--D--------AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 215 ~i~~~~~-iPVi~iA~GGI~t~~--d--------~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.+++..+ .++ ...||+-.. . +..+.+.|+|.+++||+|++++||...++++
T Consensus 151 ~ir~~~~~~~~---vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~~~~ 212 (213)
T TIGR01740 151 EIRKFTGDFLI---LTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAAKRI 212 (213)
T ss_pred HHHHhcCCceE---EeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHh
Confidence 5555432 233 368886321 2 2677889999999999999999998877654
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein. |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.003 Score=59.90 Aligned_cols=49 Identities=22% Similarity=0.445 Sum_probs=36.2
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCCCHHHHH----HHHHcCC--CEEEEccccccCCCH
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVATPADAA----MMMQLGC--DGVFVGSGVFKSGDP 261 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~t~~d~~----~~l~~Ga--dgV~VGsai~~a~dp 261 (310)
+..+++.+...+|+++ ++||+ +.+++. .++++|+ .||++||++.+...+
T Consensus 231 ~~f~~~~~a~~~P~vv-lsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~ 285 (340)
T PRK12858 231 KLFREQSDATDLPFIF-LSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGIE 285 (340)
T ss_pred HHHHHHHhhCCCCEEE-ECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhc
Confidence 3455566667899986 69998 555544 4557899 999999999986544
|
|
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0047 Score=57.29 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=63.8
Q ss_pred hhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc
Q 021609 127 ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI 206 (310)
Q Consensus 127 ~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~ 206 (310)
.+.++.++...+...+.+.+.|.+++..+.++|+|+|-+-+.. ++++
T Consensus 196 ~~av~~~r~~~~~~kIeVEv~sleea~ea~~~gaDiI~LDn~s--------------------------~e~~------- 242 (296)
T PRK09016 196 RQAVEKAFWLHPDVPVEVEVENLDELDQALKAGADIIMLDNFT--------------------------TEQM------- 242 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEeCCCC--------------------------hHHH-------
Confidence 3444444444456779999999999999999999999876431 1111
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.++. ++.+. ++||| +++++.+..++|+|.+.+|+....+
T Consensus 243 ---~~av~~~~~--~~~ie--aSGGI-~~~ni~~yA~tGVD~Is~galthsa 286 (296)
T PRK09016 243 ---REAVKRTNG--RALLE--VSGNV-TLETLREFAETGVDFISVGALTKHV 286 (296)
T ss_pred ---HHHHHhhcC--CeEEE--EECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 112222222 34444 89999 7999999999999999999865543
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.026 Score=52.30 Aligned_cols=176 Identities=19% Similarity=0.238 Sum_probs=96.5
Q ss_pred cCCCHHHHHHHHHcCCcEEEecc--CCcccccccC-CC-CCCCCHHHHHHHHhhcCcceeecccc--Cc----HHHHHHH
Q 021609 41 DVVTPEQARVAEEAGACAVMALE--RVPADIRSQG-GV-ARMSDPQLIKEIKQSVTIPVMAKARI--GH----FVEAQIL 110 (310)
Q Consensus 41 ~~~~~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~~-G~-~~~~~~~~i~~i~~~~~iPv~vk~~~--~~----~~~a~~~ 110 (310)
.+-|.--|+.++++|++++ .+. .........- |. .+....+.+++|.+.+++||++..-. +. ...++.+
T Consensus 19 ~~~Da~SAri~e~aGf~Ai-~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~ 97 (285)
T TIGR02317 19 GAINAMAALLAERAGFEAI-YLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREM 97 (285)
T ss_pred CCCCHHHHHHHHHcCCCEE-EEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHH
Confidence 4456677889999999987 221 0000000000 10 01112345666677889999996332 22 3457899
Q ss_pred HHcCCCEEEeCCC--------------CCchhHHHHHHh---c--CCCCcEEEecC-----CHHHH----HHHHHhCCCE
Q 021609 111 EAIGIDYVDESEV--------------LTPADEENHINK---H--NFRIPFVCGCR-----NLGEA----LRRIREGAAM 162 (310)
Q Consensus 111 ~~aGad~Vi~~~~--------------~~~~~~~~~i~~---~--~~~i~~~v~~~-----t~~ea----~~~~~~Gad~ 162 (310)
.++|+.++.+-|. .+..+....++. . +.++.+++-+. ..+|+ +...++|+|.
T Consensus 98 ~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~ 177 (285)
T TIGR02317 98 EDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADM 177 (285)
T ss_pred HHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCE
Confidence 9999999953221 233344433332 1 12222222211 13333 2234668888
Q ss_pred EEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCH-HHHHH
Q 021609 163 IRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP-ADAAM 240 (310)
Q Consensus 163 V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~-~d~~~ 240 (310)
|.+.+.. +.+.++++.+..+.|+++ +..+|- ++ -++.+
T Consensus 178 vfi~g~~---------------------------------------~~e~i~~~~~~i~~Pl~~n~~~~~~-~p~~s~~e 217 (285)
T TIGR02317 178 IFPEALT---------------------------------------SLEEFRQFAKAVKVPLLANMTEFGK-TPLFTADE 217 (285)
T ss_pred EEeCCCC---------------------------------------CHHHHHHHHHhcCCCEEEEeccCCC-CCCCCHHH
Confidence 8775421 133455565555678742 134553 33 35777
Q ss_pred HHHcCCCEEEEcccccc
Q 021609 241 MMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 241 ~l~~GadgV~VGsai~~ 257 (310)
+.++|+.-|..|..++.
T Consensus 218 L~~lGv~~v~~~~~~~~ 234 (285)
T TIGR02317 218 LREAGYKMVIYPVTAFR 234 (285)
T ss_pred HHHcCCcEEEEchHHHH
Confidence 78899999999998886
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0023 Score=56.72 Aligned_cols=51 Identities=27% Similarity=0.467 Sum_probs=45.7
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
..+++++++.+...+|+- ..|||++.+|+.+++.+|||-|.+.|+-++ ||.
T Consensus 61 ~~~~vv~r~A~~vfiPlt--VGGGI~s~eD~~~ll~aGADKVSINsaAv~--~p~ 111 (256)
T COG0107 61 TMLDVVERVAEQVFIPLT--VGGGIRSVEDARKLLRAGADKVSINSAAVK--DPE 111 (256)
T ss_pred hHHHHHHHHHhhceeeeE--ecCCcCCHHHHHHHHHcCCCeeeeChhHhc--ChH
Confidence 347788888888899998 589999999999999999999999999997 775
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0027 Score=56.23 Aligned_cols=31 Identities=35% Similarity=0.522 Sum_probs=25.1
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
++.|= |+|||+|.+|+..++++|++-+-..+
T Consensus 183 ~vgvK--aSGGIrt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 183 RVGVK--ASGGIRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred Cceee--ccCCcCCHHHHHHHHHHhHHHhcccc
Confidence 46676 89999999999999999976665443
|
|
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0053 Score=56.75 Aligned_cols=92 Identities=13% Similarity=0.058 Sum_probs=64.2
Q ss_pred chhHHHHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 126 PADEENHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+..+.+++..+ ...+.+.+.|.+++..+.++|+|+|-+-+.. ++++
T Consensus 183 i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDnms--------------------------pe~l----- 231 (290)
T PRK06559 183 VQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNMS--------------------------LEQI----- 231 (290)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH-----
Confidence 3444555554333 5779999999999999999999999876431 1111
Q ss_pred ccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.+++ ++.+. ++||| +++++.+...+|+|.+.+|+....+
T Consensus 232 -----~~av~~~~~--~~~le--aSGGI-~~~ni~~yA~tGVD~Is~galthsa 275 (290)
T PRK06559 232 -----EQAITLIAG--RSRIE--CSGNI-DMTTISRFRGLAIDYVSSGSLTHSA 275 (290)
T ss_pred -----HHHHHHhcC--ceEEE--EECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 112222222 34444 89999 7999999999999999999866543
|
|
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=97.15 E-value=0.011 Score=51.04 Aligned_cols=110 Identities=21% Similarity=0.249 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE-- 122 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~-- 122 (310)
.+.+..+.++|++.+ .|+.. ...|. ....+.++++++.+ .+++... ...+++..+.++|+|.|-.+.
T Consensus 54 ~~ev~~l~~aGadII-AlDaT-~R~Rp------~~l~~li~~i~~~~-~l~MADi--st~ee~~~A~~~G~D~I~TTLsG 122 (192)
T PF04131_consen 54 LKEVDALAEAGADII-ALDAT-DRPRP------ETLEELIREIKEKY-QLVMADI--STLEEAINAAELGFDIIGTTLSG 122 (192)
T ss_dssp HHHHHHHHHCT-SEE-EEE-S-SSS-S------S-HHHHHHHHHHCT-SEEEEE---SSHHHHHHHHHTT-SEEE-TTTT
T ss_pred HHHHHHHHHcCCCEE-EEecC-CCCCC------cCHHHHHHHHHHhC-cEEeeec--CCHHHHHHHHHcCCCEEEccccc
Confidence 478999999999965 66411 01111 12257888999887 5555544 356899999999999994221
Q ss_pred ----CC-C--chhHHHHHHhcCCCCcEEEe--cCCHHHHHHHHHhCCCEEEEcC
Q 021609 123 ----VL-T--PADEENHINKHNFRIPFVCG--CRNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 123 ----~~-~--~~~~~~~i~~~~~~i~~~v~--~~t~~ea~~~~~~Gad~V~v~g 167 (310)
.. . .-++.+.+.. .+++++++ .++++++.++.++|++.|.+.+
T Consensus 123 YT~~t~~~~pD~~lv~~l~~--~~~pvIaEGri~tpe~a~~al~~GA~aVVVGs 174 (192)
T PF04131_consen 123 YTPYTKGDGPDFELVRELVQ--ADVPVIAEGRIHTPEQAAKALELGAHAVVVGS 174 (192)
T ss_dssp SSTTSTTSSHHHHHHHHHHH--TTSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred CCCCCCCCCCCHHHHHHHHh--CCCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence 11 1 2244444443 36778776 8999999999999999998864
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.16 Score=46.40 Aligned_cols=182 Identities=21% Similarity=0.224 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC---c-ceeeccccCcHHHHHHHHHcCCC
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT---I-PVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~---i-Pv~vk~~~~~~~~a~~~~~aGad 116 (310)
+++++.|+.+.++|||.+ +.+. ..|.+.-+++..+++.+.+. + +|.+-......+..+.+.+.|.|
T Consensus 54 it~~eda~~a~~~GaD~iGfIf~---------~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld 124 (256)
T PLN02363 54 ITSARDAAMAVEAGADFIGMILW---------PKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLE 124 (256)
T ss_pred CCcHHHHHHHHHcCCCEEEEecC---------CCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCC
Confidence 688999999999999987 2221 12223345778888876542 1 23332221223445677889999
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHH-HHHHH---hCCCEEEEcCC-CCCcchHHHHHHHHhhccceEee
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEA-LRRIR---EGAAMIRTKGE-AGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea-~~~~~---~Gad~V~v~g~-~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
.|-.+...++. ..+.++. ...+.-.+.+.+..+. ..... ..+|++-+... +++|.
T Consensus 125 ~VQLHG~e~~~-~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~~GGtG~------------------ 184 (256)
T PLN02363 125 LVQLHGNGSRA-AFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSATGGSGK------------------ 184 (256)
T ss_pred EEEECCCCCHH-HHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeCCCCCCCC------------------
Confidence 99544443333 3333332 1233333333332221 11211 23676655533 22331
Q ss_pred cccChhHHHHhhhccCCcHHHHH--HHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccC----CCHHHH
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVM--QTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS----GDPVKR 264 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~--~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a----~dp~~~ 264 (310)
.-+|..+. .+. ...|++ .+||| +++++.+++. .+..||=|.|.+=.+ .|+. .
T Consensus 185 ---------------t~DW~~l~~~~~~--~~~p~i--LAGGL-~peNV~~ai~~~~P~GVDVsSGVE~~pG~~KD~~-K 243 (256)
T PLN02363 185 ---------------GFNWQNFKLPSVR--SRNGWL--LAGGL-TPENVHEAVSLLKPTGVDVSSGICGPDGIRKDPS-K 243 (256)
T ss_pred ---------------ccCHHHhcccccc--cCCCEE--EECCC-CHHHHHHHHHhcCCcEEEeCCcccCCCCcccCHH-H
Confidence 12243332 111 245887 47999 7999999985 799999999999753 4654 3
Q ss_pred HHHHHHHHh
Q 021609 265 AQAIVRAVT 273 (310)
Q Consensus 265 a~~l~~~i~ 273 (310)
.++|++.++
T Consensus 244 I~~fv~~vr 252 (256)
T PLN02363 244 ISSFISAVK 252 (256)
T ss_pred HHHHHHHHH
Confidence 344666664
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.1 Score=46.20 Aligned_cols=177 Identities=17% Similarity=0.173 Sum_probs=102.1
Q ss_pred cccCCCHHHHHHHHHcCC-cEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc----HHHHHHHHHc
Q 021609 39 IMDVVTPEQARVAEEAGA-CAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH----FVEAQILEAI 113 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga-~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~----~~~a~~~~~a 113 (310)
+.|-.|.+..+.+.+.|. +++ --||. ..+..+ . ....+.++++++...-||.+..+..+ .+.++.+.+.
T Consensus 3 ~lDsa~~~ei~~~~~~~~i~Gv-TTNPs--ll~k~~-~--~~~~~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~l~~~ 76 (211)
T cd00956 3 FLDTADLEEIKKASETGLLDGV-TTNPS--LIAKSG-R--IDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASL 76 (211)
T ss_pred EecCCCHHHHHHHHhcCCcCcc-ccCHH--HHHhcC-C--cCHHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHHHHHh
Confidence 345566777787877665 444 33432 222212 1 12246777777776777776554322 3556666665
Q ss_pred CCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcC-CCCCcchHHHHHHHHhhccceEe
Q 021609 114 GIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKG-EAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 114 Gad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g-~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
+-..++ ++....-.+..+.+++. ++.+.+ .+.|.+.+..+.++|++||...- +.
T Consensus 77 ~~~~~iKIP~T~~gl~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~--------------------- 133 (211)
T cd00956 77 GGNVVVKIPVTEDGLKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYVSPFVGRI--------------------- 133 (211)
T ss_pred CCCEEEEEcCcHhHHHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEEEEecChH---------------------
Confidence 334444 44333333444555443 555444 48899999999999999987652 21
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
... ...+.+.++++.+ ..+.|.-+ ...|++++.++.+++.+|||.|-+.-.+++
T Consensus 134 -~~~-----------g~dg~~~i~~i~~~~~~~~~~tki-l~As~r~~~ei~~a~~~Gad~vTv~~~vl~ 190 (211)
T cd00956 134 -DDL-----------GGDGMELIREIRTIFDNYGFDTKI-LAASIRNPQHVIEAALAGADAITLPPDVLE 190 (211)
T ss_pred -hhc-----------CCCHHHHHHHHHHHHHHcCCCceE-EecccCCHHHHHHHHHcCCCEEEeCHHHHH
Confidence 000 1122333333322 23344221 247999999999999999999988755543
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.2 Score=45.03 Aligned_cols=186 Identities=21% Similarity=0.183 Sum_probs=105.6
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC--cceeec--cccC-c---HHHHHH
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT--IPVMAK--ARIG-H---FVEAQI 109 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--iPv~vk--~~~~-~---~~~a~~ 109 (310)
+..++.+.+.|+.+.++|+|.| ++ ++.. .|+--...+..+++|++.+. .|++.. +... . ...+..
T Consensus 3 lLvSvr~~eEA~~Al~~GaDiI-Dv----K~P~--~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~ 75 (238)
T PRK02227 3 LLVSVRNLEEALEALAGGADII-DV----KNPK--EGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALG 75 (238)
T ss_pred eeeccCCHHHHHHHHhcCCCEE-Ec----cCCC--CCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHH
Confidence 4567889999999999999965 87 2222 23322345789999988764 788774 3221 1 122344
Q ss_pred HHHcCCCEE-EeCCCC-CchhHHH-------HHHhcCCCCcEE-E---ecC-----CHHH-HHHHHHhCCCEEEEcCCCC
Q 021609 110 LEAIGIDYV-DESEVL-TPADEEN-------HINKHNFRIPFV-C---GCR-----NLGE-ALRRIREGAAMIRTKGEAG 170 (310)
Q Consensus 110 ~~~aGad~V-i~~~~~-~~~~~~~-------~i~~~~~~i~~~-v---~~~-----t~~e-a~~~~~~Gad~V~v~g~~~ 170 (310)
+..+|+|+| ++-... ...+..+ .++.+..+..++ + +-. +..+ ...+.++|++.+.+.....
T Consensus 76 ~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~K 155 (238)
T PRK02227 76 AAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIK 155 (238)
T ss_pred HHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccC
Confidence 555899999 532221 2222222 222222332222 1 211 2333 3345678999888765544
Q ss_pred CcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 171 TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 171 ~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
.+. +.+..++.+++ .+++++.++. .+-.- ..|-+ ..+|+..+..+++|.+-
T Consensus 156 dg~---------------~Lfd~l~~~~L----------~~Fv~~ar~~-Gl~~g--LAGSL-~~~dip~L~~l~pD~lG 206 (238)
T PRK02227 156 DGK---------------SLFDHMDEEEL----------AEFVAEARSH-GLMSA--LAGSL-KFEDIPALKRLGPDILG 206 (238)
T ss_pred CCc---------------chHhhCCHHHH----------HHHHHHHHHc-ccHhH--hcccC-chhhHHHHHhcCCCEEE
Confidence 332 12222222221 2345545543 22222 25777 59999999999999999
Q ss_pred EccccccCC
Q 021609 251 VGSGVFKSG 259 (310)
Q Consensus 251 VGsai~~a~ 259 (310)
+=+++....
T Consensus 207 fRgavC~g~ 215 (238)
T PRK02227 207 VRGAVCGGG 215 (238)
T ss_pred echhccCCC
Confidence 999999655
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.019 Score=54.67 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=61.9
Q ss_pred CHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--C------CCchh----HHHHHHhcCCCCcEEEe--
Q 021609 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE--V------LTPAD----EENHINKHNFRIPFVCG-- 145 (310)
Q Consensus 80 ~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~--~------~~~~~----~~~~i~~~~~~i~~~v~-- 145 (310)
..+.++.+++.+++|+++|.. ...++++.+.++|+|+|+.+. . .++.+ +.......+..++++++
T Consensus 201 ~~~~i~~l~~~~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GG 279 (344)
T cd02922 201 TWDDIKWLRKHTKLPIVLKGV-QTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGG 279 (344)
T ss_pred CHHHHHHHHHhcCCcEEEEcC-CCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 457899999999999999965 557889999999999996221 1 12222 22222122224666665
Q ss_pred cCCHHHHHHHHHhCCCEEEEc
Q 021609 146 CRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 146 ~~t~~ea~~~~~~Gad~V~v~ 166 (310)
+.+..++.++..+|++.|.+.
T Consensus 280 Ir~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 280 VRRGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 899999999999999999875
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.037 Score=55.17 Aligned_cols=40 Identities=35% Similarity=0.473 Sum_probs=33.0
Q ss_pred HHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 210 YDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 210 ~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.+.++++++.. ++||+ + |+|.|.+++..+.++|||+|.+|
T Consensus 257 l~~i~~i~~~~p~~~vi--~-g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 257 LDRVREIKAKYPDVQII--A-GNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred HHHHHHHHhhCCCCCEE--E-eccCCHHHHHHHHHcCCCEEEEC
Confidence 55677777654 78987 2 88889999999999999999886
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.036 Score=50.00 Aligned_cols=172 Identities=23% Similarity=0.271 Sum_probs=96.2
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc--------CCcccccccCCCCCCCCHHHHHHHHhhcCcceeecc--ccCc-----
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE--------RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKA--RIGH----- 103 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~--------~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~--~~~~----- 103 (310)
+..+-|.--|+.++++|++++ .+. ..| |. +.-.+......+++|.+.+++||++.. .++.
T Consensus 13 ~p~~~D~~SAr~~e~~Gf~ai-~~sg~~~a~s~G~p-D~---~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v 87 (238)
T PF13714_consen 13 LPNVWDALSARLAERAGFDAI-ATSGAGVAASLGYP-DG---GLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENV 87 (238)
T ss_dssp EEEESSHHHHHHHHHTT-SEE-EEHHHHHHHHTTS--SS---S-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHH
T ss_pred eCCCcCHHHHHHHHHcCCCEE-EechHHHHHHcCCC-CC---CCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHH
Confidence 334556678999999999987 221 111 00 100011123466667788899999963 3232
Q ss_pred HHHHHHHHHcCCCEEEeCCC---------CCchhHHHHHHh-----cCCCCcEEEecCC-------HHH----HHHHHHh
Q 021609 104 FVEAQILEAIGIDYVDESEV---------LTPADEENHINK-----HNFRIPFVCGCRN-------LGE----ALRRIRE 158 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~~~~---------~~~~~~~~~i~~-----~~~~i~~~v~~~t-------~~e----a~~~~~~ 158 (310)
...++.+.++|+.++.+-|. .++++....++. ...++.+++-+.. .+| ++...++
T Consensus 88 ~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eA 167 (238)
T PF13714_consen 88 ARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEA 167 (238)
T ss_dssp HHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHc
Confidence 46678999999999952221 234444444433 2345444443322 122 2333568
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~ 238 (310)
|+|.|.+.+.. +.+.++++.+..+.|+.+...++- -++
T Consensus 168 GAD~ifi~~~~---------------------------------------~~~~i~~~~~~~~~Pl~v~~~~~~---~~~ 205 (238)
T PF13714_consen 168 GADMIFIPGLQ---------------------------------------SEEEIERIVKAVDGPLNVNPGPGT---LSA 205 (238)
T ss_dssp T-SEEEETTSS---------------------------------------SHHHHHHHHHHHSSEEEEETTSSS---S-H
T ss_pred CCCEEEeCCCC---------------------------------------CHHHHHHHHHhcCCCEEEEcCCCC---CCH
Confidence 99998876531 122244454444689887543332 556
Q ss_pred HHHHHcCCCEEEEcccccc
Q 021609 239 AMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 239 ~~~l~~GadgV~VGsai~~ 257 (310)
.++.++|+.-|..|..+++
T Consensus 206 ~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 206 EELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp HHHHHTTESEEEETSHHHH
T ss_pred HHHHHCCCcEEEEcHHHHH
Confidence 6668899999999998885
|
... |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=54.57 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=64.1
Q ss_pred hhHHHHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+.++.++++.+ ...+.+.+.|.+++..+.++|+|+|.+-+.. ++++
T Consensus 181 ~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~s--------------------------~e~l------ 228 (281)
T PRK06106 181 REAIRRARAGVGHLVKIEVEVDTLDQLEEALELGVDAVLLDNMT--------------------------PDTL------ 228 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCCC--------------------------HHHH------
Confidence 344455554333 4779999999999999999999999876431 1111
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.+. .+.|+- ++||| +++++.+..++|+|.+.+|+....+
T Consensus 229 ----~~av~~~~--~~~~le--aSGGI-~~~ni~~yA~tGVD~Is~Galthsa 272 (281)
T PRK06106 229 ----REAVAIVA--GRAITE--ASGRI-TPETAPAIAASGVDLISVGWLTHSA 272 (281)
T ss_pred ----HHHHHHhC--CCceEE--EECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence 11222222 245665 89999 7999999999999999999866543
|
|
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.012 Score=54.31 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=63.2
Q ss_pred hhHHHHHHhcCC-CCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINKHNF-RIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~~~~-~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+..+.+++..+ ...+.+++.|.+++..+.++|+|+|.+-+.. ++++
T Consensus 180 ~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn~s--------------------------~e~l------ 227 (281)
T PRK06543 180 TEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNFS--------------------------LDDL------ 227 (281)
T ss_pred HHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECCCC--------------------------HHHH------
Confidence 344444444333 4779999999999999999999999876431 1111
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.+..+++ +..+. ++||| |++++.+...+|+|.+.+|+....+
T Consensus 228 ----~~av~~~~~--~~~le--aSGgI-~~~ni~~yA~tGVD~Is~galths~ 271 (281)
T PRK06543 228 ----REGVELVDG--RAIVE--ASGNV-NLNTVGAIASTGVDVISVGALTHSV 271 (281)
T ss_pred ----HHHHHHhCC--CeEEE--EECCC-CHHHHHHHHhcCCCEEEeCccccCC
Confidence 112222332 23344 89999 7999999999999999999866653
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0029 Score=56.98 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=45.6
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
...++++++.+.+.+|+. ..|||+|.+|+.+++.+||+-|++||..++ ||.
T Consensus 63 ~n~~~I~~i~~~~~~pi~--vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~--~~~ 113 (234)
T PRK13587 63 REFDYIKSLRRLTTKDIE--VGGGIRTKSQIMDYFAAGINYCIVGTKGIQ--DTD 113 (234)
T ss_pred chHHHHHHHHhhcCCeEE--EcCCcCCHHHHHHHHHCCCCEEEECchHhc--CHH
Confidence 457788899887889998 689999999999999999999999999997 775
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.038 Score=49.90 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=52.0
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc-CC-cccccccCC--CCCCCCHHHHHHHHhhcC-cceeeccccCc-------HHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE-RV-PADIRSQGG--VARMSDPQLIKEIKQSVT-IPVMAKARIGH-------FVE 106 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~-~~-~~~~~~~~G--~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~-------~~~ 106 (310)
+..+-|+-.|+.++++|++++ .+. .. ........+ ..+......++.+++.+. .||++..-.++ ...
T Consensus 16 ~~~ayD~~sA~i~e~aG~dai-~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~ 94 (240)
T cd06556 16 TLTAYDYSMAKQFADAGLNVM-LVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFEL 94 (240)
T ss_pred EecCCCHHHHHHHHHcCCCEE-EEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHH
Confidence 444557788999999999987 221 00 000000000 001112345666677764 79999754442 233
Q ss_pred HHHHHHcCCCEEEeCCCCCchhHHHHHH
Q 021609 107 AQILEAIGIDYVDESEVLTPADEENHIN 134 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~~~~~~~~~~i~ 134 (310)
++.+.++||++|.+-+..+..+.++.+.
T Consensus 95 ~~~l~~aGa~gv~iED~~~~~~~i~ai~ 122 (240)
T cd06556 95 AKTFMRAGAAGVKIEGGEWHIETLQMLT 122 (240)
T ss_pred HHHHHHcCCcEEEEcCcHHHHHHHHHHH
Confidence 6778889999996544433333334443
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.025 Score=49.71 Aligned_cols=123 Identities=19% Similarity=0.240 Sum_probs=83.1
Q ss_pred HHHHHHhhcCcceeeccccCc-HHHHHHHHHcCCCEEEeCC-CCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhC
Q 021609 83 LIKEIKQSVTIPVMAKARIGH-FVEAQILEAIGIDYVDESE-VLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREG 159 (310)
Q Consensus 83 ~i~~i~~~~~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~~~-~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~G 159 (310)
....+++.-=+||+..+.... ...++.+.+.|.+.+-++. .....+.++.+.+..++..++++ +-|.+++..+.++|
T Consensus 6 ~~~~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aG 85 (211)
T COG0800 6 ILSKLKAQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAG 85 (211)
T ss_pred HHHHHHHCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcC
Confidence 344444444567775554332 3557889999999995443 33456677777665557777776 77889999999999
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
++++.. + .. +.+.++ .+...++|++ =|+.|+..+.
T Consensus 86 a~fiVs-P-~~--------------------------------------~~ev~~-~a~~~~ip~~----PG~~TptEi~ 120 (211)
T COG0800 86 AQFIVS-P-GL--------------------------------------NPEVAK-AANRYGIPYI----PGVATPTEIM 120 (211)
T ss_pred CCEEEC-C-CC--------------------------------------CHHHHH-HHHhCCCccc----CCCCCHHHHH
Confidence 999853 1 11 122333 3333578886 5889999999
Q ss_pred HHHHcCCCEEE
Q 021609 240 MMMQLGCDGVF 250 (310)
Q Consensus 240 ~~l~~GadgV~ 250 (310)
.++++|++.+=
T Consensus 121 ~Ale~G~~~lK 131 (211)
T COG0800 121 AALELGASALK 131 (211)
T ss_pred HHHHcChhhee
Confidence 99999998763
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.21 Score=46.33 Aligned_cols=193 Identities=12% Similarity=0.097 Sum_probs=115.0
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+...|+++.+. ..+..+ . ......++.+.+..++||.+.+--+ .++.+..+.++|.
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIlq~s~~--~~~~~~-~--~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GF 98 (286)
T PRK12738 24 NIHNAETIQAILEVCSEMRSPVILAGTPG--TFKHIA-L--EEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGV 98 (286)
T ss_pred EeCCHHHHHHHHHHHHHHCCCEEEEcCcc--hhhhCC-H--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 4455654 445577788766665311 111111 1 1113455566677899999975433 5788899999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCC----cEE---------Ee----cCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRI----PFV---------CG----CRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i----~~~---------v~----~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- .+. ++.+ ++.++....+..+ -.+ -+ -++++++.+-. +.|+|.+.+.-.
T Consensus 99 tSVM~DgS~-lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG 177 (286)
T PRK12738 99 RSAMIDGSH-FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIG 177 (286)
T ss_pred CeEeecCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccC
Confidence 9993 333 3322 3344443322110 000 00 34677787765 468888776421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+ -| ..++ ....-+++.++++++.+++|+++=.+.|+. .+++.++.+.|..=
T Consensus 178 t--~H---------------G~Y~-----------~~p~Ldfd~l~~I~~~~~vPLVLHGgSG~~-~e~~~kai~~GI~K 228 (286)
T PRK12738 178 T--AH---------------GLYS-----------KTPKIDFQRLAEIREVVDVPLVLHGASDVP-DEFVRRTIELGVTK 228 (286)
T ss_pred c--cc---------------CCCC-----------CCCcCCHHHHHHHHHHhCCCEEEeCCCCCC-HHHHHHHHHcCCeE
Confidence 1 11 0010 012335889999999889998865677874 79999999999999
Q ss_pred EEEccccccCCCHHHHHHHHHHHHh
Q 021609 249 VFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 249 V~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|=++|.+.. ...+.+.+.+.
T Consensus 229 iNi~T~l~~-----a~~~~~~~~~~ 248 (286)
T PRK12738 229 VNVATELKI-----AFAGAVKAWFA 248 (286)
T ss_pred EEeCcHHHH-----HHHHHHHHHHH
Confidence 999998875 33444555443
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.22 Score=46.06 Aligned_cols=193 Identities=13% Similarity=0.134 Sum_probs=114.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.++.-|+++.+. ..+..+ . ......++.+.+..++||.+.+--+ .++.+..+.++|.
T Consensus 22 N~~n~e~~~avi~AAee~~sPvIlq~s~~--~~~~~~-~--~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GF 96 (282)
T TIGR01858 22 NIHNLETIQAVVETAAEMRSPVILAGTPG--TFKHAG-T--EYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGV 96 (282)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEeCcc--HHhhCC-H--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 4455554 445577778766666311 111111 1 0112455556677899999975433 5688999999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCC----cEE-------------EecCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRI----PFV-------------CGCRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i----~~~-------------v~~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- .+. ++.+ ++.++....+..+ -.+ ...++++++.+-. +.|+|.+.+.-.
T Consensus 97 tSVM~DgS~-lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG 175 (282)
T TIGR01858 97 RSAMIDGSH-FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIG 175 (282)
T ss_pred CEEeecCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccC
Confidence 9993 333 3322 3334433333110 000 0034667777755 568888775421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+--| .++ ....-+++.++++++.+++|++.=.+.|+ ..+++.++...|..=
T Consensus 176 t~HG-----------------~yk-----------~~p~Ldf~~L~~I~~~~~iPLVlHGgSG~-~~e~~~~ai~~Gi~K 226 (282)
T TIGR01858 176 TAHG-----------------LYK-----------KTPKLDFDRLAEIREVVDVPLVLHGASDV-PDEDVRRTIELGICK 226 (282)
T ss_pred cccc-----------------CcC-----------CCCccCHHHHHHHHHHhCCCeEEecCCCC-CHHHHHHHHHcCCeE
Confidence 1101 000 01234588999999888999886567777 478999999999999
Q ss_pred EEEccccccCCCHHHHHHHHHHHHh
Q 021609 249 VFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 249 V~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|=++|.+.. ...+.+.+.+.
T Consensus 227 iNi~T~l~~-----a~~~~~~~~~~ 246 (282)
T TIGR01858 227 VNVATELKI-----AFSGAVKAYFA 246 (282)
T ss_pred EEeCcHHHH-----HHHHHHHHHHH
Confidence 999999885 33444544443
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.13 Score=47.23 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=57.4
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCH-HHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDP-QLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~-~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
|.+....++..++.+...|.|++ +|++ +|....... ..++.+ +..+++.++...-+....++.++++|
T Consensus 21 G~~~~~~sp~~~E~~a~~GfD~v~iD~E---------Hg~~~~~~l~~~i~a~-~~~g~~~lVRvp~~~~~~i~r~LD~G 90 (267)
T PRK10128 21 GLWLSSTTSYMAEIAATSGYDWLLIDGE---------HAPNTIQDLYHQLQAI-APYASQPVIRPVEGSKPLIKQVLDIG 90 (267)
T ss_pred EEEecCCCcHHHHHHHHcCCCEEEEccc---------cCCCCHHHHHHHHHHH-HhcCCCeEEECCCCCHHHHHHHhCCC
Confidence 45666778899999999999998 5553 211111111 223322 34566666665545557788999999
Q ss_pred CCEEEeCCCCCchhHHHHHHh
Q 021609 115 IDYVDESEVLTPADEENHINK 135 (310)
Q Consensus 115 ad~Vi~~~~~~~~~~~~~i~~ 135 (310)
|++|+.+...+.++..+.++.
T Consensus 91 A~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 91 AQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred CCeeEecCcCCHHHHHHHHHh
Confidence 999987766666666555544
|
|
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.018 Score=53.62 Aligned_cols=98 Identities=14% Similarity=0.140 Sum_probs=64.7
Q ss_pred chhHHHHHHh----cCCCCcEEEecCCHHHHHHHHH------hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccC
Q 021609 126 PADEENHINK----HNFRIPFVCGCRNLGEALRRIR------EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 126 ~~~~~~~i~~----~~~~i~~~v~~~t~~ea~~~~~------~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
..+..+.+++ ..+...+.+.+.|.+++..+.+ +|+|+|.+-+...++.
T Consensus 186 i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~---------------------- 243 (308)
T PLN02716 186 ITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLE---------------------- 243 (308)
T ss_pred HHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCccccc----------------------
Confidence 3444455543 2244679999999999999999 9999998765411110
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+...+.+.+++..+. .+.|+- ++||| +++++.+...+|+|.+.+|.....
T Consensus 244 ---------~~~~~~e~l~~av~~~~~~~~lE--aSGGI-t~~ni~~yA~tGVD~Is~Galths 295 (308)
T PLN02716 244 ---------NGDVDVSMLKEAVELINGRFETE--ASGNV-TLDTVHKIGQTGVTYISSGALTHS 295 (308)
T ss_pred ---------ccCCCHHHHHHHHHhhCCCceEE--EECCC-CHHHHHHHHHcCCCEEEeCccccC
Confidence 011112222222111 235665 89999 799999999999999999986654
|
|
| >PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.11 Score=47.35 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=57.7
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHH---HhhcCcceeeccccCcHHHHHHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEI---KQSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i---~~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
|.+....++..++.+...|.|++ +|++ +|.. +.+.+..+ .+..+++.++.........++.+++
T Consensus 22 g~~~~~~sp~~~e~~a~~G~D~v~iD~E---------Hg~~---~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r~LD 89 (256)
T PRK10558 22 GCWSALANPITTEVLGLAGFDWLVLDGE---------HAPN---DVSTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLD 89 (256)
T ss_pred EEEEcCCCcHHHHHHHhcCCCEEEEccc---------cCCC---CHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhC
Confidence 45667778899999999999998 5553 2221 12333332 3446777777766555677888999
Q ss_pred cCCCEEEeCCCCCchhHHHHHH
Q 021609 113 IGIDYVDESEVLTPADEENHIN 134 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i~ 134 (310)
+|+++|+.+...+.++..+.++
T Consensus 90 ~Ga~giivP~v~tae~a~~~v~ 111 (256)
T PRK10558 90 IGFYNFLIPFVETAEEARRAVA 111 (256)
T ss_pred CCCCeeeecCcCCHHHHHHHHH
Confidence 9999998776655555555443
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.3 Score=45.23 Aligned_cols=182 Identities=15% Similarity=0.135 Sum_probs=109.7
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.++..|+++.+. ..+. .|. ......++.+.+..++||.+.+--+ +.+.+..+.++|.
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~--~~~~-~g~--~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~Gf 98 (284)
T PRK12737 24 NIHNLETLQVVVETAAELRSPVILAGTPG--TFSY-AGT--DYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGI 98 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcCcc--HHhh-CCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 4455554 445577788766665311 1111 111 0112345566777899999875433 4688899999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCCc----EE--E-----------ecCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRIP----FV--C-----------GCRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i~----~~--v-----------~~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- .+. ++.. +..++....+..+. .+ . .-+++++|.+-. +.|+|.+.+.-.
T Consensus 99 tSVMiDgS~-lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiG 177 (284)
T PRK12737 99 RSVMIDGSH-LSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIG 177 (284)
T ss_pred CeEEecCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccC
Confidence 9993 333 3322 33444443322110 00 0 034677888755 468888776421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+--| .++ ....-+++.++++++.+++|++.=.+.|+ ..+++.++.+.|..=
T Consensus 178 t~HG-----------------~y~-----------~~p~Ld~~~L~~I~~~~~iPLVlHGgSG~-~~e~~~kai~~Gi~K 228 (284)
T PRK12737 178 TAHG-----------------LYK-----------GEPKLDFERLAEIREKVSIPLVLHGASGV-PDEDVKKAISLGICK 228 (284)
T ss_pred cccc-----------------ccC-----------CCCcCCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHCCCeE
Confidence 1101 010 01234588899999888999876566777 478899999999999
Q ss_pred EEEcccccc
Q 021609 249 VFVGSGVFK 257 (310)
Q Consensus 249 V~VGsai~~ 257 (310)
|=++|.+-.
T Consensus 229 iNi~T~l~~ 237 (284)
T PRK12737 229 VNVATELKI 237 (284)
T ss_pred EEeCcHHHH
Confidence 999998874
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.015 Score=52.10 Aligned_cols=52 Identities=19% Similarity=0.422 Sum_probs=46.1
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
...+.++++.+..++||- .+|||+|.+++..++.+|++-|++||.-.+ ||..
T Consensus 62 ~n~~~i~~i~~~~~~~vQ--vGGGIRs~~~v~~ll~~G~~rViiGt~av~--~p~~ 113 (241)
T COG0106 62 RNLEAIKEILEATDVPVQ--VGGGIRSLEDVEALLDAGVARVIIGTAAVK--NPDL 113 (241)
T ss_pred ccHHHHHHHHHhCCCCEE--eeCCcCCHHHHHHHHHCCCCEEEEecceec--CHHH
Confidence 346788999888899999 589999999999999999999999999986 7753
|
|
| >COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.018 Score=51.97 Aligned_cols=117 Identities=24% Similarity=0.338 Sum_probs=66.4
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhc---cceEeecccChhH-------------HHHhhhc--------cCCc
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVM---GDIRVLRNMDDDE-------------VFTFAKK--------IAAP 209 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~---~~~~~l~~~~~d~-------------~~~~~~~--------~~~~ 209 (310)
.+.+.|+|++.+|++.+...+..+++...+.. -....++.++..+ +..+++. ....
T Consensus 84 ~~~~~g~d~vtvH~~~G~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~ 163 (240)
T COG0284 84 AAADLGADAVTVHAFGGFDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCS 163 (240)
T ss_pred HhhhcCCcEEEEeCcCCHHHHHHHHHHHhhcCceEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceEEEcC
Confidence 35678999999998766444444555554431 1134444444321 1111111 1111
Q ss_pred HHHHHHHhhcC--CCCEEEe---C------CCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 210 YDLVMQTKQLG--RLPVVHF---A------AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~i---A------~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
.+..+.+++.. +.+++.. + .+++.++.++ ...|+|.++|||.|+.++||...++++.+.+.
T Consensus 164 ~~e~~~ir~~~g~~~~iltPGIg~~~~~gdQ~~~~t~~~A---~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~ 235 (240)
T COG0284 164 AEEVAAIREILGPDFLILTPGIGAGSQGGDQGRVMTPGEA---VRAGADYIVVGRPITQAGDPVAAARAIAREIA 235 (240)
T ss_pred HHHHHHHHHhcCCCcEEECCCcCcCcCCCCcccccCHHHH---HhcCCCEEEEChhhhcCCChHHHHHHHHHHHH
Confidence 23344454443 2334321 3 3444445555 66899999999999999999988887766554
|
|
| >TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.1 Score=47.45 Aligned_cols=85 Identities=15% Similarity=0.030 Sum_probs=57.1
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHH---HhhcCcceeeccccCcHHHHHHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEI---KQSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i---~~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
|.+....+|..++.+...|.|++ +|++ +|.. +.+.+..+ .+..+++.++.........++.+++
T Consensus 15 G~~~~~~sp~~~e~~a~~G~D~v~iD~E---------Hg~~---~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD 82 (249)
T TIGR03239 15 GCWSALGNPITTEVLGLAGFDWLLLDGE---------HAPN---DVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLD 82 (249)
T ss_pred EEEEcCCCcHHHHHHHhcCCCEEEEecc---------cCCC---CHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhc
Confidence 45667788899999999999998 5553 2111 13333333 3345777777765555677889999
Q ss_pred cCCCEEEeCCCCCchhHHHHH
Q 021609 113 IGIDYVDESEVLTPADEENHI 133 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i 133 (310)
+|+++|+.+...+.++..+.+
T Consensus 83 ~Ga~gIivP~v~taeea~~~v 103 (249)
T TIGR03239 83 IGFYNFLIPFVESAEEAERAV 103 (249)
T ss_pred CCCCEEEecCcCCHHHHHHHH
Confidence 999999866655555555544
|
In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which |
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.016 Score=52.17 Aligned_cols=77 Identities=27% Similarity=0.332 Sum_probs=61.6
Q ss_pred Ccc--cccC-CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHH
Q 021609 36 GGV--IMDV-VTPEQARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 36 ~g~--i~~~-~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~ 111 (310)
.|+ +.++ .|+..|+++++.|+.+++-| ...-||.+ ..++..++.+++..++||++.-.++.-+++..+.
T Consensus 136 eGF~VlPY~~~D~v~a~rLed~Gc~aVMPl-------gsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~~Am 208 (267)
T CHL00162 136 KGFTVLPYINADPMLAKHLEDIGCATVMPL-------GSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAM 208 (267)
T ss_pred CCCEEeecCCCCHHHHHHHHHcCCeEEeec-------cCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHHHHH
Confidence 554 3344 36789999999999998666 22234544 5688999999999999999998888888999999
Q ss_pred HcCCCEEE
Q 021609 112 AIGIDYVD 119 (310)
Q Consensus 112 ~aGad~Vi 119 (310)
+.|+|+|+
T Consensus 209 ElGaDgVL 216 (267)
T CHL00162 209 ELGASGVL 216 (267)
T ss_pred HcCCCEEe
Confidence 99999997
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0056 Score=55.41 Aligned_cols=53 Identities=13% Similarity=0.089 Sum_probs=45.8
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
+...+.++++.+...+|+- ..|||+|.+|+..++..|++-|++||..++ ||..
T Consensus 60 ~~n~~~i~~i~~~~~~~v~--vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~--~p~~ 112 (243)
T TIGR01919 60 GNNEMMLEEVVKLLVVVEE--LSGGRRDDSSLRAALTGGRARVNGGTAALE--NPWW 112 (243)
T ss_pred cchHHHHHHHHHHCCCCEE--EcCCCCCHHHHHHHHHcCCCEEEECchhhC--CHHH
Confidence 3446788888887788998 589999999999999999999999999997 7763
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.11 Score=51.71 Aligned_cols=40 Identities=30% Similarity=0.470 Sum_probs=33.3
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.+.++++++. .+++|+ .|.|.|.+.+..++++|||+|-||
T Consensus 256 ~~~i~~ik~~~p~~~v~---agnv~t~~~a~~l~~aGad~v~vg 296 (479)
T PRK07807 256 LEALRAVRALDPGVPIV---AGNVVTAEGTRDLVEAGADIVKVG 296 (479)
T ss_pred HHHHHHHHHHCCCCeEE---eeccCCHHHHHHHHHcCCCEEEEC
Confidence 5678888765 467886 599999999999999999999854
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.065 Score=46.49 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHH
Q 021609 104 FVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~ 181 (310)
.+.++.+.+.|++.+- ........+..+.+++..+++.++++ +.+.+++..+.++|++++..-+.
T Consensus 19 ~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~~------------- 85 (190)
T cd00452 19 LALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPGL------------- 85 (190)
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCCC-------------
Confidence 3567888899999994 33333344455555554445666664 67789999999999999853210
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+.+..+..+. .+.|++ =|+.|++++.++++.|||.+.+
T Consensus 86 ---------------------------~~~~~~~~~~-~~~~~i----~gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 86 ---------------------------DPEVVKAANR-AGIPLL----PGVATPTEIMQALELGADIVKL 123 (190)
T ss_pred ---------------------------CHHHHHHHHH-cCCcEE----CCcCCHHHHHHHHHCCCCEEEE
Confidence 0122222232 456776 3888999999999999999997
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.038 Score=53.56 Aligned_cols=67 Identities=19% Similarity=0.316 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEe
Q 021609 149 LGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHF 227 (310)
Q Consensus 149 ~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~i 227 (310)
.+++..+.++|+|+|.+-...+ + .....+.++++++. .+++++
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~g--~--------------------------------~~~~~~~v~~ik~~~p~~~vi-- 198 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAHG--H--------------------------------STRIIELVKKIKTKYPNLDLI-- 198 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCCC--C--------------------------------ChhHHHHHHHHHhhCCCCcEE--
Confidence 3667777888999988654321 1 01124567777664 367775
Q ss_pred CCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 228 AAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 228 A~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.|+|.|++++..++++|+|+|.+|
T Consensus 199 -~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 199 -AGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred -EEecCCHHHHHHHHHcCCCEEEEC
Confidence 489999999999999999999987
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.027 Score=51.51 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=64.9
Q ss_pred chhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 126 PADEENHINKHNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+.++..++.-+. ..+-+++.|.+++.++.++|+|+|.+.+.. ++++
T Consensus 174 i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm~--------------------------~e~~----- 222 (280)
T COG0157 174 ITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNMS--------------------------PEEL----- 222 (280)
T ss_pred HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCCC--------------------------HHHH-----
Confidence 45566666554344 448899999999999999999999886542 1111
Q ss_pred ccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.+. ..-.+++=+|||| |++++.....+|.|.+.+|.-...+
T Consensus 223 -----~~av~~l~--~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galths~ 268 (280)
T COG0157 223 -----KEAVKLLG--LAGRALLEASGGI-TLENIREYAETGVDVISVGALTHSA 268 (280)
T ss_pred -----HHHHHHhc--cCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccccCC
Confidence 11222221 1113443489999 7999999999999999999766653
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0024 Score=57.93 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=41.6
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
..+.++++.+.+++|+. ..|||++ +++.+++++||+.|++||+++..
T Consensus 64 n~~~i~~i~~~~~~~v~--vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~ 110 (253)
T TIGR02129 64 NDDAAKEALHAYPGGLQ--VGGGIND-TNAQEWLDEGASHVIVTSWLFTK 110 (253)
T ss_pred cHHHHHHHHHhCCCCEE--EeCCcCH-HHHHHHHHcCCCEEEECcHHHhC
Confidence 46778888877889998 6899986 99999999999999999999973
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.025 Score=53.20 Aligned_cols=124 Identities=16% Similarity=0.146 Sum_probs=76.3
Q ss_pred cCcceee--ccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-c-CCCCcEEEe--c--CCHHHHHHHHHh--CC
Q 021609 91 VTIPVMA--KARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINK-H-NFRIPFVCG--C--RNLGEALRRIRE--GA 160 (310)
Q Consensus 91 ~~iPv~v--k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~-~~~i~~~v~--~--~t~~ea~~~~~~--Ga 160 (310)
+++|++. .+..+.++.+..+.+.|-=.++ +.-+++++..+++++ . .....+.++ + .+.+.+..+.++ ++
T Consensus 44 ~~iPii~AnMdtv~~~~mA~~la~~g~~~~i-Hk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~ 122 (343)
T TIGR01305 44 SGVPIIAANMDTVGTFEMAAALSQHSIFTAI-HKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQL 122 (343)
T ss_pred eCCceEecCCCcccCHHHHHHHHHCCCeEEE-eeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCC
Confidence 5899887 3555667778888877766554 333455665666644 1 112222223 2 233445556666 48
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~ 239 (310)
|+|.+....+ +. ....+.++++++.. +.+|+ .|.|-|++++.
T Consensus 123 d~iviD~AhG--hs--------------------------------~~~i~~ik~ir~~~p~~~vi---aGNV~T~e~a~ 165 (343)
T TIGR01305 123 KFICLDVANG--YS--------------------------------EHFVEFVKLVREAFPEHTIM---AGNVVTGEMVE 165 (343)
T ss_pred CEEEEECCCC--cH--------------------------------HHHHHHHHHHHhhCCCCeEE---EecccCHHHHH
Confidence 9988764322 20 11244566776653 45554 47799999999
Q ss_pred HHHHcCCCEEEEc
Q 021609 240 MMMQLGCDGVFVG 252 (310)
Q Consensus 240 ~~l~~GadgV~VG 252 (310)
.++++|||++.||
T Consensus 166 ~Li~aGAD~ikVg 178 (343)
T TIGR01305 166 ELILSGADIVKVG 178 (343)
T ss_pred HHHHcCCCEEEEc
Confidence 9999999999887
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.066 Score=50.56 Aligned_cols=124 Identities=19% Similarity=0.250 Sum_probs=77.8
Q ss_pred cCcceeec--cccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEec----CCHHHHHHHHHhCCCEEE
Q 021609 91 VTIPVMAK--ARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGC----RNLGEALRRIREGAAMIR 164 (310)
Q Consensus 91 ~~iPv~vk--~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~----~t~~ea~~~~~~Gad~V~ 164 (310)
.++|++.. +.....+.+..+.++|.=+++... +++.++.+.+++....+.+.+.+ .+.+.+..+.+.|+++|.
T Consensus 33 l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~~-~~~~~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~ 111 (325)
T cd00381 33 LNIPLVSAPMDTVTESEMAIAMARLGGIGVIHRN-MSIEEQAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVDVIV 111 (325)
T ss_pred cCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeCC-CCHHHHHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCCEEE
Confidence 46888763 333445667777778876666432 45566666665522223333322 334556667788999987
Q ss_pred EcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHH
Q 021609 165 TKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQ 243 (310)
Q Consensus 165 v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~ 243 (310)
+....+ + .....+.++++++.. ++||+ .|.+.|++++..+.+
T Consensus 112 vd~~~G--~--------------------------------~~~~~~~i~~ik~~~p~v~Vi---~G~v~t~~~A~~l~~ 154 (325)
T cd00381 112 IDSAHG--H--------------------------------SVYVIEMIKFIKKKYPNVDVI---AGNVVTAEAARDLID 154 (325)
T ss_pred EECCCC--C--------------------------------cHHHHHHHHHHHHHCCCceEE---ECCCCCHHHHHHHHh
Confidence 753221 1 011245667776643 47776 288999999999999
Q ss_pred cCCCEEEEc
Q 021609 244 LGCDGVFVG 252 (310)
Q Consensus 244 ~GadgV~VG 252 (310)
+|+|++.+|
T Consensus 155 aGaD~I~vg 163 (325)
T cd00381 155 AGADGVKVG 163 (325)
T ss_pred cCCCEEEEC
Confidence 999999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.013 Score=52.22 Aligned_cols=77 Identities=31% Similarity=0.405 Sum_probs=54.4
Q ss_pred Ccc--cccC-CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHH
Q 021609 36 GGV--IMDV-VTPEQARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 36 ~g~--i~~~-~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~ 111 (310)
.|+ +-++ .|+..|+++++.|+.+++-+. ..-|+.+ ..++..++.+++..++||++.-.++.-.++..+.
T Consensus 122 eGF~VlPY~~~D~v~akrL~d~GcaavMPlg-------sPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~AM 194 (247)
T PF05690_consen 122 EGFVVLPYCTDDPVLAKRLEDAGCAAVMPLG-------SPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM 194 (247)
T ss_dssp TT-EEEEEE-S-HHHHHHHHHTT-SEBEEBS-------SSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHHHHH
T ss_pred CCCEEeecCCCCHHHHHHHHHCCCCEEEecc-------cccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHH
Confidence 554 3344 357899999999999886662 2234443 5678999999999999999998888778899999
Q ss_pred HcCCCEEE
Q 021609 112 AIGIDYVD 119 (310)
Q Consensus 112 ~aGad~Vi 119 (310)
+.|+|+|+
T Consensus 195 ElG~daVL 202 (247)
T PF05690_consen 195 ELGADAVL 202 (247)
T ss_dssp HTT-SEEE
T ss_pred HcCCceee
Confidence 99999997
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.038 Score=51.99 Aligned_cols=125 Identities=18% Similarity=0.140 Sum_probs=80.6
Q ss_pred hcCcceeecc--ccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCC-CCcEEEecC-CHHHHHH---HHHhC--C
Q 021609 90 SVTIPVMAKA--RIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNF-RIPFVCGCR-NLGEALR---RIREG--A 160 (310)
Q Consensus 90 ~~~iPv~vk~--~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~-~i~~~v~~~-t~~ea~~---~~~~G--a 160 (310)
..+.|+.++- .....+.++.+.+.|.-.++.- +++++..+++++... ++.+.+++. +.++..+ +.++| +
T Consensus 32 ~l~~P~~inAM~t~in~~LA~~a~~~G~~~i~hK--~~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~ 109 (321)
T TIGR01306 32 KFKLPVVPANMQTIIDEKLAEQLAENGYFYIMHR--FDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTP 109 (321)
T ss_pred EecCcEEeeccchhhhHHHHHHHHHcCCEEEEec--CCHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 3578888752 2223567888888887777533 456666666666433 455666643 3333333 45667 6
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
|+|.+....+ +. ..-++.++++++..+.|.+ ..|+|.+++++..
T Consensus 110 d~i~~D~ahg--~s--------------------------------~~~~~~i~~i~~~~p~~~v--i~GnV~t~e~a~~ 153 (321)
T TIGR01306 110 EYITIDIAHG--HS--------------------------------NSVINMIKHIKTHLPDSFV--IAGNVGTPEAVRE 153 (321)
T ss_pred CEEEEeCccC--ch--------------------------------HHHHHHHHHHHHhCCCCEE--EEecCCCHHHHHH
Confidence 8887654321 20 1124567777776666755 2588999999999
Q ss_pred HHHcCCCEEEEc
Q 021609 241 MMQLGCDGVFVG 252 (310)
Q Consensus 241 ~l~~GadgV~VG 252 (310)
++++|||++.||
T Consensus 154 l~~aGad~I~V~ 165 (321)
T TIGR01306 154 LENAGADATKVG 165 (321)
T ss_pred HHHcCcCEEEEC
Confidence 999999999988
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.18 Score=45.14 Aligned_cols=187 Identities=22% Similarity=0.226 Sum_probs=98.5
Q ss_pred CcccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
=|.+..+.+|=+++.+..+|.||+ ++-+..|.+.+. ....++.+...-.-|++ ....+....++.+++.|
T Consensus 19 iGlw~~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~s--------l~~qL~a~~~~~~~pvV-R~p~g~~~~Ikq~LD~G 89 (255)
T COG3836 19 IGLWLSLPDPYMAEILATAGFDWLLIDGEHAPNDLQS--------LLHQLQAVAAYASPPVV-RPPVGDPVMIKQLLDIG 89 (255)
T ss_pred EEeeecCCcHHHHHHHHhcCCCEEEecccccCccHHH--------HHHHHHHhhccCCCCee-eCCCCCHHHHHHHHccc
Confidence 457888888889999999999998 444333322211 12333333332344554 33345567789999999
Q ss_pred CCEEEeCCCCCchhHHHH------------------------------HHhcCCCCcEEEecCCHHHHHH--HH--HhCC
Q 021609 115 IDYVDESEVLTPADEENH------------------------------INKHNFRIPFVCGCRNLGEALR--RI--REGA 160 (310)
Q Consensus 115 ad~Vi~~~~~~~~~~~~~------------------------------i~~~~~~i~~~v~~~t~~ea~~--~~--~~Ga 160 (310)
|..++.+-.-+.++.... +...+-++++++.+.|.+-... ++ -.|+
T Consensus 90 AqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaaveGV 169 (255)
T COG3836 90 AQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDAIAAVEGV 169 (255)
T ss_pred cceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHHHHccCCC
Confidence 999975433233332222 2222223555565555432222 11 1377
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
|.|.+.+. ++... +...-..+-+++. ......+..++...+..-++ -.+++++.+
T Consensus 170 DgvFiGPa----DLaas----------~G~~gn~~hpeV~------~aI~~~~~~i~aaGKaagil-----~~~p~~a~~ 224 (255)
T COG3836 170 DGVFIGPA----DLAAS----------LGHLGNPGHPEVQ------AAIEHIIARIRAAGKAAGIL-----AADPADARR 224 (255)
T ss_pred CeEEECHH----HHHHH----------cCCCCCCCCHHHH------HHHHHHHHHHHhcCCccccc-----cCCHHHHHH
Confidence 87766432 11000 0000001111110 01122344455555544432 147899999
Q ss_pred HHHcCCCEEEEccccc
Q 021609 241 MMQLGCDGVFVGSGVF 256 (310)
Q Consensus 241 ~l~~GadgV~VGsai~ 256 (310)
++++||.-|.+|+-.+
T Consensus 225 yl~lGa~fvavG~D~~ 240 (255)
T COG3836 225 YLALGATFVAVGSDTG 240 (255)
T ss_pred HHHhCCeEEEEeccHH
Confidence 9999999999997544
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.019 Score=51.58 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=43.4
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
....+.++++.+...+|+. ..|||++.+|+.+++.+||+-|++||..++
T Consensus 64 ~~n~~~i~~i~~~~~~~v~--vgGGir~~edv~~~l~~Ga~~viigt~~~~ 112 (233)
T cd04723 64 GDNDEAIRELAAAWPLGLW--VDGGIRSLENAQEWLKRGASRVIVGTETLP 112 (233)
T ss_pred CccHHHHHHHHHhCCCCEE--EecCcCCHHHHHHHHHcCCCeEEEcceecc
Confidence 3447788888887789998 689999999999999999999999999987
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.034 Score=54.86 Aligned_cols=113 Identities=19% Similarity=0.271 Sum_probs=76.7
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE---e
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD---E 120 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi---~ 120 (310)
.+.+..+.++|++.| .++.. .|.+ ....+.++++++.+ ++||+++... ..+.++.+.++|||+|. +
T Consensus 226 ~~r~~~L~~aG~d~I-~vd~a-------~g~~-~~~~~~i~~i~~~~~~~~vi~G~v~-t~~~a~~l~~aGad~i~vg~g 295 (450)
T TIGR01302 226 KERAEALVKAGVDVI-VIDSS-------HGHS-IYVIDSIKEIKKTYPDLDIIAGNVA-TAEQAKALIDAGADGLRVGIG 295 (450)
T ss_pred HHHHHHHHHhCCCEE-EEECC-------CCcH-hHHHHHHHHHHHhCCCCCEEEEeCC-CHHHHHHHHHhCCCEEEECCC
Confidence 477889999999976 44311 1111 12367888898884 8999986543 35789999999999993 1
Q ss_pred CCC---------C--CchhHHHHHHh--cCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEcC
Q 021609 121 SEV---------L--TPADEENHINK--HNFRIPFVC--GCRNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 121 ~~~---------~--~~~~~~~~i~~--~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~g 167 (310)
+.. . +.......+.+ +..++++++ ++++..++.++..+||+.|.+.+
T Consensus 296 ~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 296 PGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGS 357 (450)
T ss_pred CCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 210 1 11122222222 235788888 69999999999999999998764
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK05283 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.02 Score=52.08 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=21.2
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
++.|- |+|||+|.+++.+++.+|.+-
T Consensus 195 ~vgIK--AsGGIrt~~~A~~~i~ag~~~ 220 (257)
T PRK05283 195 TVGFK--PAGGVRTAEDAAQYLALADEI 220 (257)
T ss_pred CeeEE--ccCCCCCHHHHHHHHHHHHHH
Confidence 35565 899999999999999886553
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.019 Score=51.93 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=43.2
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
...+.++++.+.. .|+- ..|||+|.+|+.+++.+||+-|++||..++ ||.
T Consensus 61 ~n~~~i~~i~~~~-~~v~--vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~--~p~ 110 (241)
T PRK14114 61 ENLPVLEKLSEFA-EHIQ--IGGGIRSLDYAEKLRKLGYRRQIVSSKVLE--DPS 110 (241)
T ss_pred chHHHHHHHHhhc-CcEE--EecCCCCHHHHHHHHHCCCCEEEECchhhC--CHH
Confidence 3467788887765 6987 589999999999999999999999999997 775
|
|
| >KOG1799 consensus Dihydropyrimidine dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0036 Score=58.48 Aligned_cols=69 Identities=22% Similarity=0.326 Sum_probs=56.9
Q ss_pred CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhc
Q 021609 222 LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVG 294 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~ 294 (310)
.|+. +.|||.+..|...++.+|++-|.|.++++-++- -..+.+...+++.+.-+.+.++.++-|..+.+
T Consensus 357 F~l~--~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~~~--~~V~~~Ca~LK~~m~~~~~~ti~~~~G~SL~~ 425 (471)
T KOG1799|consen 357 FSLS--GIGGVETGYDAAEFILLGSNTVQVCTGVMMHGY--GHVKTLCAELKDFMKQHNFSTIEEFRGHSLQY 425 (471)
T ss_pred Cccc--cccCcccccchhhHhhcCCcHhhhhhHHHhcCc--chHHHHHHHHHHHHHHcCchhhhhccCcchhh
Confidence 5787 669999999999999999999999999997543 45677888888888777788888887776543
|
|
| >TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.49 Score=42.00 Aligned_cols=174 Identities=21% Similarity=0.178 Sum_probs=101.2
Q ss_pred cccCCCHHHHHHHHHcCC-cEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC----cHHHHHHHHHc
Q 021609 39 IMDVVTPEQARVAEEAGA-CAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG----HFVEAQILEAI 113 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga-~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~----~~~~a~~~~~a 113 (310)
+.|-.|.+..+.+.+.|. +++ --||. ..+..+ . ...+.++++++..+-||.+..... ..++++.+.+.
T Consensus 4 ~lDsAd~~~i~~~~~~~~i~Gv-TTNPs--ll~k~g-~---~~~~~~~~i~~~~~g~vs~qv~~~~~~~mi~~a~~l~~~ 76 (213)
T TIGR00875 4 FLDTANVEEIKKAAELGILAGV-TTNPS--LIAKEG-R---SFWEVLKEIQEAVEGPVSAETISLDAEGMVEEAKELAKL 76 (213)
T ss_pred EEcCCCHHHHHHHHhcCCcceE-eCCHH--HHHhcC-C---CHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHHHHh
Confidence 345566777888888775 454 44433 122211 1 124677777766555666543222 24566777777
Q ss_pred CCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccceEe
Q 021609 114 GIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 114 Gad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
+-+.++ ++....=....+.+++ .++.+.+ .+-+.+.+..+.++|++||... |+..
T Consensus 77 ~~~i~iKIP~T~~Gl~A~~~L~~--~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~-------------------- 134 (213)
T TIGR00875 77 APNIVVKIPMTSEGLKAVKILKK--EGIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLD-------------------- 134 (213)
T ss_pred CCCeEEEeCCCHHHHHHHHHHHH--CCCceeEEEecCHHHHHHHHHcCCCEEEeecchHH--------------------
Confidence 666555 4432222234444444 3544433 3789999999999999999864 2210
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHh----hc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTK----QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~----~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.. ...+.+.++++. .. .+..|+ ...++++.++.++..+|||.+-+.-.+++
T Consensus 135 --d~-----------g~dg~~~v~~~~~~~~~~~~~tkIl---aAS~r~~~~v~~~~~~G~d~vTip~~vl~ 190 (213)
T TIGR00875 135 --DI-----------GGDGMKLIEEVKTIFENHAPDTEVI---AASVRHPRHVLEAALIGADIATMPLDVMQ 190 (213)
T ss_pred --Hc-----------CCCHHHHHHHHHHHHHHcCCCCEEE---EeccCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence 00 112233333332 22 356665 46889999999999999999987755443
|
This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth. |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.52 Score=43.68 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=110.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+..-|+++.+. ..+. .|. ......++.+.+..++||.+.+--+ .++.+..+.++|.
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~--~~~~-~g~--~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~Gf 98 (284)
T PRK09195 24 NIHNLETMQVVVETAAELHSPVIIAGTPG--TFSY-AGT--EYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGV 98 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcChh--HHhh-CCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 3445554 445567777766666311 1111 111 0113456666777899999875333 5788899999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCCc----EE-------------EecCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRIP----FV-------------CGCRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i~----~~-------------v~~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- .+. ++.+ ++.++....+..+. .+ ..-++++++.+-. +.|+|.+.+.-.
T Consensus 99 tSVM~DgS~-l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiG 177 (284)
T PRK09195 99 RSVMIDGSH-LPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIG 177 (284)
T ss_pred CEEEeCCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccC
Confidence 9993 333 3322 33444433331100 00 0035777888855 468888776421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+ -+ ..++. ...-+++.++++++..++|+++=.+.|+ ..+++.++.+.|..=
T Consensus 178 t--~H---------------G~y~~-----------~p~Ld~~~L~~I~~~~~vPLVLHGgSG~-~~e~~~~ai~~Gi~K 228 (284)
T PRK09195 178 T--AH---------------GMYKG-----------EPKLDFDRLENIRQWVNIPLVLHGASGL-PTKDIQQTIKLGICK 228 (284)
T ss_pred c--cc---------------cccCC-----------CCcCCHHHHHHHHHHhCCCeEEecCCCC-CHHHHHHHHHcCCeE
Confidence 1 11 01110 1234588999998888999886567787 478999999999999
Q ss_pred EEEcccccc
Q 021609 249 VFVGSGVFK 257 (310)
Q Consensus 249 V~VGsai~~ 257 (310)
|=++|.+..
T Consensus 229 iNi~T~l~~ 237 (284)
T PRK09195 229 VNVATELKI 237 (284)
T ss_pred EEeCcHHHH
Confidence 999998874
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.021 Score=54.25 Aligned_cols=124 Identities=21% Similarity=0.298 Sum_probs=75.9
Q ss_pred cCcceee--ccccCcHHHHHHHHHcCCCEEEeCCCCCchh---HHHHHHhc--------CCCCcEEEec--C--CHHHHH
Q 021609 91 VTIPVMA--KARIGHFVEAQILEAIGIDYVDESEVLTPAD---EENHINKH--------NFRIPFVCGC--R--NLGEAL 153 (310)
Q Consensus 91 ~~iPv~v--k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~---~~~~i~~~--------~~~i~~~v~~--~--t~~ea~ 153 (310)
.++|++. .+.....+.+..+...|.=+|+... .+.++ ..+.+++. ...+.+.+.+ . +.+.+.
T Consensus 36 l~iPivsa~MDtVte~~mAiama~~Gglgvih~~-~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~ 114 (352)
T PF00478_consen 36 LKIPIVSAPMDTVTESEMAIAMARLGGLGVIHRN-MSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAE 114 (352)
T ss_dssp ESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEESS-SCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHH
T ss_pred ecCceEecCccccchHHHHHHHHHhcCCceecCC-CCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHH
Confidence 5889887 3455556778778888777775332 23332 33333321 1235555543 3 255666
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCC
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGV 232 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI 232 (310)
.+.++|+|++.+....+ +.. ...+.++++++. .++||+ .|.|
T Consensus 115 ~L~~agvD~ivID~a~g--~s~--------------------------------~~~~~ik~ik~~~~~~~vi---aGNV 157 (352)
T PF00478_consen 115 ALVEAGVDVIVIDSAHG--HSE--------------------------------HVIDMIKKIKKKFPDVPVI---AGNV 157 (352)
T ss_dssp HHHHTT-SEEEEE-SST--TSH--------------------------------HHHHHHHHHHHHSTTSEEE---EEEE
T ss_pred HHHHcCCCEEEccccCc--cHH--------------------------------HHHHHHHHHHHhCCCceEE---eccc
Confidence 67789999998864422 100 013456666654 458887 4999
Q ss_pred CCHHHHHHHHHcCCCEEEEc
Q 021609 233 ATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 233 ~t~~d~~~~l~~GadgV~VG 252 (310)
-|.+.+..++++|||+|-||
T Consensus 158 ~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 158 VTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp -SHHHHHHHHHTT-SEEEES
T ss_pred CCHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999999
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.62 Score=43.27 Aligned_cols=183 Identities=13% Similarity=0.149 Sum_probs=106.1
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccC-cHHHHHHHHHc
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIG-HFVEAQILEAI 113 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~-~~~~a~~~~~a 113 (310)
++.+.+. .+++++.++.-|+++.+. ..+...|. ......++...+.. ++||.+.+--+ .++.+..+.++
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIlq~~~~--~~~~~~g~--~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~ 99 (288)
T TIGR00167 24 NINNLETINAVLEAAAEEKSPVIIQFSNG--AAKYIAGL--GAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKA 99 (288)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEECCcc--hhhccCCH--HHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHc
Confidence 3445554 445677788866666311 11110111 00123444445556 89999875433 56888999999
Q ss_pred CCCEEE--eCCCCCch-------hHHHHHHhcCCCCc----EE---------E----ecCCHHHHHHHH-HhCCCEEEEc
Q 021609 114 GIDYVD--ESEVLTPA-------DEENHINKHNFRIP----FV---------C----GCRNLGEALRRI-REGAAMIRTK 166 (310)
Q Consensus 114 Gad~Vi--~~~~~~~~-------~~~~~i~~~~~~i~----~~---------v----~~~t~~ea~~~~-~~Gad~V~v~ 166 (310)
|.+-|- .+. ++.+ ++.++....+..+. .+ . .-++++++.+-. +.|+|.+.+.
T Consensus 100 GftSVMiDgS~-lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 178 (288)
T TIGR00167 100 GFSSVMIDGSH-EPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAA 178 (288)
T ss_pred CCCEEEecCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeec
Confidence 999993 333 3322 33333332221110 00 0 034667777755 4588887754
Q ss_pred CCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC
Q 021609 167 GEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG 245 (310)
Q Consensus 167 g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G 245 (310)
-.+--| .++ .... -+++.++++++.+++|++.=.+.|+ ..+++.++...|
T Consensus 179 iGt~HG-----------------~y~-----------~~p~~Ld~~~L~~I~~~v~vPLVlHGgSG~-~~e~~~~ai~~G 229 (288)
T TIGR00167 179 IGNVHG-----------------VYK-----------GEPKGLDFERLEEIQKYVNLPLVLHGGSGI-PDEEIKKAISLG 229 (288)
T ss_pred cCcccc-----------------ccC-----------CCCCccCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcC
Confidence 211101 000 0112 4688999999988999885456666 458999999999
Q ss_pred CCEEEEcccccc
Q 021609 246 CDGVFVGSGVFK 257 (310)
Q Consensus 246 adgV~VGsai~~ 257 (310)
..=|=++|.+..
T Consensus 230 i~KiNi~T~l~~ 241 (288)
T TIGR00167 230 VVKVNIDTELQI 241 (288)
T ss_pred CeEEEcChHHHH
Confidence 999999998874
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.04 Score=51.88 Aligned_cols=124 Identities=17% Similarity=0.225 Sum_probs=78.2
Q ss_pred cCcceee--ccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcC--C-C-CcEEEecC--CHHHHHHHHH--hCC
Q 021609 91 VTIPVMA--KARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHN--F-R-IPFVCGCR--NLGEALRRIR--EGA 160 (310)
Q Consensus 91 ~~iPv~v--k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~--~-~-i~~~v~~~--t~~ea~~~~~--~Ga 160 (310)
+++|++. .+..+.++.+..+.+.|.=.++ +.-+++++..+++++.. . + +.+.+++. +.+.+..+.+ +|+
T Consensus 45 ~giPii~AnMdTV~~~~mA~~la~~g~~~~i-Hk~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~ 123 (346)
T PRK05096 45 SGVPIIAANMDTVGTFEMAKALASFDILTAV-HKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPAL 123 (346)
T ss_pred cCCceEecCCCccccHHHHHHHHHCCCeEEE-ecCCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCC
Confidence 4699887 3555667888888888866664 33345566666665422 1 2 22222322 2333444555 489
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~ 239 (310)
|+|.+....+ +. ....+.++++++. .+++|+ .|.|-|++.+.
T Consensus 124 D~iviD~AhG--hs--------------------------------~~~i~~ik~ik~~~P~~~vI---aGNV~T~e~a~ 166 (346)
T PRK05096 124 NFICIDVANG--YS--------------------------------EHFVQFVAKAREAWPDKTIC---AGNVVTGEMVE 166 (346)
T ss_pred CEEEEECCCC--cH--------------------------------HHHHHHHHHHHHhCCCCcEE---EecccCHHHHH
Confidence 9998764321 20 1124567777664 467876 59999999999
Q ss_pred HHHHcCCCEEEEc
Q 021609 240 MMMQLGCDGVFVG 252 (310)
Q Consensus 240 ~~l~~GadgV~VG 252 (310)
.++.+|||++-||
T Consensus 167 ~Li~aGAD~vKVG 179 (346)
T PRK05096 167 ELILSGADIVKVG 179 (346)
T ss_pred HHHHcCCCEEEEc
Confidence 9999999999766
|
|
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.64 Score=42.90 Aligned_cols=194 Identities=13% Similarity=0.145 Sum_probs=113.3
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+...|+++.+. ..+. .|. ......++.+.+...+||.+.+--+ .++.+..+.++|.
T Consensus 19 N~~n~e~~~avi~AAe~~~sPvIi~~~~~--~~~~-~~~--~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~Gf 93 (276)
T cd00947 19 NINNLETLKAILEAAEETRSPVILQISEG--AIKY-AGL--ELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGF 93 (276)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEEcCcc--hhhh-CCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCC
Confidence 3445543 445577788866666321 1111 110 1113455566677899999975433 4688889999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCCc----EE--E---------ecCCHHHHHHHH-HhCCCEEEEcCCCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRIP----FV--C---------GCRNLGEALRRI-REGAAMIRTKGEAG 170 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i~----~~--v---------~~~t~~ea~~~~-~~Gad~V~v~g~~~ 170 (310)
+-|- .+. ++.. ++.++.+..+..+. .+ . .-++++++.+-. +.|+|.+.+.-.+
T Consensus 94 tSVMiD~S~-l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt- 171 (276)
T cd00947 94 SSVMIDGSH-LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGT- 171 (276)
T ss_pred CEEEeCCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCc-
Confidence 9993 332 3322 33344433322110 01 0 134677787765 4588887754211
Q ss_pred CcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 171 TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 171 ~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
-+ ..++. ....-+++.++++.+..++|++.=.+.|+ ..+++.++.+.|..=|=
T Consensus 172 -~H---------------G~Y~~----------~~p~L~~~~L~~i~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~KiN 224 (276)
T cd00947 172 -SH---------------GAYKG----------GEPKLDFDRLKEIAERVNVPLVLHGGSGI-PDEQIRKAIKLGVCKIN 224 (276)
T ss_pred -cc---------------cccCC----------CCCccCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcCCeEEE
Confidence 01 00000 01234588999999888999885456666 46889999999999999
Q ss_pred EccccccCCCHHHHHHHHHHHHh
Q 021609 251 VGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 251 VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
++|.+.. ...+.+.+.++
T Consensus 225 i~T~l~~-----a~~~~~~~~~~ 242 (276)
T cd00947 225 INTDLRL-----AFTAALREYLA 242 (276)
T ss_pred eChHHHH-----HHHHHHHHHHH
Confidence 9999874 33444555543
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.055 Score=51.04 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=79.2
Q ss_pred cCcceeeccc--cCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCC-CCcEEEecC----CHHHHHHHHHhCC--C
Q 021609 91 VTIPVMAKAR--IGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNF-RIPFVCGCR----NLGEALRRIREGA--A 161 (310)
Q Consensus 91 ~~iPv~vk~~--~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~-~i~~~v~~~----t~~ea~~~~~~Ga--d 161 (310)
.+.|+.++-- ....+.++.+.+.|.-.++.- +++++...+.++..+ ++.+.+++. +.+++..+.++|+ |
T Consensus 36 l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k--~~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d 113 (326)
T PRK05458 36 FKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR--FDPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPE 113 (326)
T ss_pred ecCcEEEecccchhHHHHHHHHHHcCCEEEEec--CCHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCC
Confidence 5678877522 123466788888887777533 455655666655433 455555543 2355666677855 9
Q ss_pred EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHH
Q 021609 162 MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 162 ~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~ 240 (310)
+|.+....+ +. ....++++++++.. ++||+ .|.|.|.+++..
T Consensus 114 ~i~iD~a~g--h~--------------------------------~~~~e~I~~ir~~~p~~~vi---~g~V~t~e~a~~ 156 (326)
T PRK05458 114 YITIDIAHG--HS--------------------------------DSVINMIQHIKKHLPETFVI---AGNVGTPEAVRE 156 (326)
T ss_pred EEEEECCCC--ch--------------------------------HHHHHHHHHHHhhCCCCeEE---EEecCCHHHHHH
Confidence 998854321 10 11245677787654 47776 367999999999
Q ss_pred HHHcCCCEEEEc
Q 021609 241 MMQLGCDGVFVG 252 (310)
Q Consensus 241 ~l~~GadgV~VG 252 (310)
+.++|+|++.||
T Consensus 157 l~~aGad~i~vg 168 (326)
T PRK05458 157 LENAGADATKVG 168 (326)
T ss_pred HHHcCcCEEEEC
Confidence 999999999987
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.77 Score=42.59 Aligned_cols=194 Identities=13% Similarity=0.158 Sum_probs=112.0
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC--cceeeccccC-cHHHHHHHHHc
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT--IPVMAKARIG-HFVEAQILEAI 113 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--iPv~vk~~~~-~~~~a~~~~~a 113 (310)
++.+.+. .+++++.+...|+++.+. ..+..+|. ......++.+.+... +||.+.+--+ .++.++.+.++
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIl~~~~~--~~~~~~~~--~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~ 99 (286)
T PRK08610 24 NLNNLEFTQAILEASQEENAPVILGVSEG--AARYMSGF--YTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDA 99 (286)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcc--HHhhcCcH--HHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHc
Confidence 4455554 445577788876666321 11111111 011335555555555 8999875333 57888999999
Q ss_pred CCCEEE--eCCCCCch-------hHHHHHHhcCCCC----cEE--E------e---cCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 114 GIDYVD--ESEVLTPA-------DEENHINKHNFRI----PFV--C------G---CRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 114 Gad~Vi--~~~~~~~~-------~~~~~i~~~~~~i----~~~--v------~---~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
|.+-|- .+. ++.+ ++.++....+..+ -.+ . + -++++++.+-. +.|+|.+.+.-.
T Consensus 100 GftSVM~DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiG 178 (286)
T PRK08610 100 GFTSVMIDASH-SPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALG 178 (286)
T ss_pred CCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecc
Confidence 999993 443 3322 3334433322110 000 0 0 25778888755 458888765421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+--| .++ ....-+++.++++++..++|+++=.+.|+ ..+++.++...|..=
T Consensus 179 t~HG-----------------~Y~-----------~~p~Ld~~~L~~I~~~~~vPLVLHGgSG~-~~e~~~~ai~~GI~K 229 (286)
T PRK08610 179 SVHG-----------------PYK-----------GEPKLGFKEMEEIGLSTGLPLVLHGGTGI-PTKDIQKAIPFGTAK 229 (286)
T ss_pred cccc-----------------ccC-----------CCCCCCHHHHHHHHHHHCCCEEEeCCCCC-CHHHHHHHHHCCCeE
Confidence 1101 010 01233588899998888999885455666 358899999999999
Q ss_pred EEEccccccCCCHHHHHHHHHHHHh
Q 021609 249 VFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 249 V~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|=++|.+-. ...+.+.+.++
T Consensus 230 iNi~T~l~~-----a~~~~~~~~~~ 249 (286)
T PRK08610 230 INVNTENQI-----ASAKAVRDVLN 249 (286)
T ss_pred EEeccHHHH-----HHHHHHHHHHH
Confidence 999998874 33444555443
|
|
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.036 Score=49.85 Aligned_cols=70 Identities=31% Similarity=0.437 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 43 VTPEQARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.|+..|+++++.|++.+.-+- ..+ |+.. ..+++.++.+++..++||++..+++.-+++..+.+.|+|+|+
T Consensus 132 dd~~~ar~l~~~G~~~vmPlg---~pI----Gsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVl 202 (248)
T cd04728 132 DDPVLAKRLEDAGCAAVMPLG---SPI----GSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVL 202 (248)
T ss_pred CCHHHHHHHHHcCCCEeCCCC---cCC----CCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 568999999999999873221 112 2222 446899999998889999999988888999999999999997
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.039 Score=49.72 Aligned_cols=72 Identities=33% Similarity=0.365 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEe
Q 021609 43 VTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~ 120 (310)
.|+..++++++.|++.+.-+. .-+..+. -..+++.++.+++..++||++..+++.-+++..+.+.|+|+|+.
T Consensus 132 ~d~~~ak~l~~~G~~~vmPlg---~pIGsg~---gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 132 DDPVLAKRLEEAGCAAVMPLG---APIGSGL---GLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred CCHHHHHHHHHcCCCEeCCCC---cCCCCCC---CCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 567999999999999873221 1122111 13458899999988899999999888889999999999999973
|
|
| >PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.028 Score=50.09 Aligned_cols=39 Identities=36% Similarity=0.519 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHHH
Q 021609 229 AGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 229 ~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.||+. .....+.. ..|+|.++|||+|++++||...++++
T Consensus 187 ~~~~~-~~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i 226 (226)
T PF00215_consen 187 AGGQK-RATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI 226 (226)
T ss_dssp CSSHH-CHHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred ccccc-ccccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence 34443 34344444 47999999999999999999988864
|
In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A .... |
| >COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.2 Score=44.25 Aligned_cols=150 Identities=18% Similarity=0.237 Sum_probs=85.4
Q ss_pred Ccceeecccc-----CcHHHHHHHHHcCCCEEEe-C-----CC----------CCchhHHHHHHh-cCCCCcEEEecCCH
Q 021609 92 TIPVMAKARI-----GHFVEAQILEAIGIDYVDE-S-----EV----------LTPADEENHINK-HNFRIPFVCGCRNL 149 (310)
Q Consensus 92 ~iPv~vk~~~-----~~~~~a~~~~~aGad~Vi~-~-----~~----------~~~~~~~~~i~~-~~~~i~~~v~~~t~ 149 (310)
++||.....- ...++.+.+..+|..+|.. + |. +....-.++++. +..++....-+.++
T Consensus 87 ~tpv~aGv~~~DPf~~~~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~ 166 (276)
T COG5564 87 QTPVLAGVNGTDPFCRMVDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSF 166 (276)
T ss_pred cCcceecccCCCcchhHHHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCH
Confidence 5677664221 1246668888899999841 0 11 112223455554 55566666677899
Q ss_pred HHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeC
Q 021609 150 GEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFA 228 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA 228 (310)
+||+.+.++|+|+|..| ||.-+|.+ ..-+..+.++..+.. ....+..+.+++- -+|+. -
T Consensus 167 ~eAqa~~~aGadiiv~hmg~ttgG~I--------------gar~~~Sl~~~vel~---~~~~~aar~v~kd-~i~l~--~ 226 (276)
T COG5564 167 EEAQAMTKAGADIIVAHMGLTTGGLI--------------GARSALSLADCVELI---ELAAEAARGVRKD-VIPLC--H 226 (276)
T ss_pred HHHHHHHHcCcceeeeccccccccee--------------ccccccCHHHHHHHH---HHHHHHHhhhhhc-eeeec--c
Confidence 99999999999999877 55433321 111222222111000 0001222222221 14554 4
Q ss_pred CCCCCCHHHHHHHHH--cCCCEEEEccccccCCCHHH
Q 021609 229 AGGVATPADAAMMMQ--LGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~--~GadgV~VGsai~~a~dp~~ 263 (310)
.|=|.+|+|..-.+. .||||..=+|.+-+ -|.+
T Consensus 227 GGPi~~p~da~yi~d~c~~~~gfygassmer--lp~e 261 (276)
T COG5564 227 GGPISMPEDARYILDRCPGCDGFYGASSMER--LPAE 261 (276)
T ss_pred CCCcCCchhhHHHHhhCCCCCcccccchhhc--cchH
Confidence 566999999988774 49999998887776 4543
|
|
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.17 Score=47.04 Aligned_cols=174 Identities=17% Similarity=0.220 Sum_probs=96.7
Q ss_pred ccCCCHHHHHHHHHcCCcEEEecc---------CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc--cCc----H
Q 021609 40 MDVVTPEQARVAEEAGACAVMALE---------RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR--IGH----F 104 (310)
Q Consensus 40 ~~~~~~~~A~~~~~~Ga~~i~~L~---------~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~--~~~----~ 104 (310)
..+-|.--|+.++++|++++ .+. ..| |. +-..+......+++|.+.+++||++..- ++. .
T Consensus 21 p~v~Da~SArl~e~aGf~ai-~~sg~~~~as~lG~p-D~---g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~ 95 (294)
T TIGR02319 21 PSAYDALSAKVIQQAGFPAV-HMTGSGTSASMLGLP-DL---GFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVW 95 (294)
T ss_pred ecCcCHHHHHHHHHcCCCEE-EecHHHHHHHHcCCC-Cc---CCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHH
Confidence 34556677899999999988 221 111 10 0000111235666677888999999632 221 3
Q ss_pred HHHHHHHHcCCCEEEeCCC--------------CCchhHHHHHHh-----cCCCCcEEEe--c---CCHHHH----HHHH
Q 021609 105 VEAQILEAIGIDYVDESEV--------------LTPADEENHINK-----HNFRIPFVCG--C---RNLGEA----LRRI 156 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~--------------~~~~~~~~~i~~-----~~~~i~~~v~--~---~t~~ea----~~~~ 156 (310)
..++.+.++|+.++.+-|. .+..+....++. ...++.+++- + ...+++ ....
T Consensus 96 r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~ 175 (294)
T TIGR02319 96 RATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYV 175 (294)
T ss_pred HHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHH
Confidence 4578999999999953221 233333333322 1123333332 1 123333 2334
Q ss_pred HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCH
Q 021609 157 REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP 235 (310)
Q Consensus 157 ~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~ 235 (310)
++|+|.|.+.+.. +.+.++.+.+..+.|++. +..||-.-.
T Consensus 176 eAGAD~ifi~~~~---------------------------------------~~~ei~~~~~~~~~P~~~nv~~~~~~p~ 216 (294)
T TIGR02319 176 AAGADCIFLEAML---------------------------------------DVEEMKRVRDEIDAPLLANMVEGGKTPW 216 (294)
T ss_pred HhCCCEEEecCCC---------------------------------------CHHHHHHHHHhcCCCeeEEEEecCCCCC
Confidence 6788888776421 123355555555667621 123443222
Q ss_pred HHHHHHHHcCCCEEEEcccccc
Q 021609 236 ADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 236 ~d~~~~l~~GadgV~VGsai~~ 257 (310)
-++.++.++|++-|..+..++.
T Consensus 217 ~s~~eL~~lG~~~v~~~~~~~~ 238 (294)
T TIGR02319 217 LTTKELESIGYNLAIYPLSGWM 238 (294)
T ss_pred CCHHHHHHcCCcEEEEcHHHHH
Confidence 4677778899999999988886
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >KOG1436 consensus Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0018 Score=59.72 Aligned_cols=77 Identities=21% Similarity=0.351 Sum_probs=61.8
Q ss_pred HHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhc
Q 021609 211 DLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGL 288 (310)
Q Consensus 211 ~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~ 288 (310)
+.++.+... .+|||| .+|||+|..|+.+-+++||+-|.+++++.. +-| ...+++...+...++..++.++++.+
T Consensus 319 ~~vR~mY~lt~g~IpiI--G~GGV~SG~DA~EkiraGASlvQlyTal~y-eGp-~i~~kIk~El~~ll~~kG~t~v~d~i 394 (398)
T KOG1436|consen 319 NTVRAMYTLTRGKIPII--GCGGVSSGKDAYEKIRAGASLVQLYTALVY-EGP-AIIEKIKRELSALLKAKGFTSVDDAI 394 (398)
T ss_pred HHHHHHHHhccCCCceE--eecCccccHhHHHHHhcCchHHHHHHHHhh-cCc-hhHHHHHHHHHHHHHhcCCCcHHHhc
Confidence 344444433 579998 899999999999999999999999999998 333 46677888888888888888888887
Q ss_pred ccc
Q 021609 289 GEA 291 (310)
Q Consensus 289 ~~~ 291 (310)
|..
T Consensus 395 G~~ 397 (398)
T KOG1436|consen 395 GKD 397 (398)
T ss_pred cCC
Confidence 753
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.89 Score=42.16 Aligned_cols=194 Identities=15% Similarity=0.177 Sum_probs=112.7
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC--cceeeccccC-cHHHHHHHHHc
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT--IPVMAKARIG-HFVEAQILEAI 113 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--iPv~vk~~~~-~~~~a~~~~~a 113 (310)
++.+.+. .+++++.++..|+++.+. ..+...|. ......++.+.+..+ +||.+.+--+ .++.+..+.++
T Consensus 24 N~~n~e~~~avi~AAe~~~sPvIiq~~~~--~~~~~~~~--~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~ 99 (285)
T PRK07709 24 NMNNLEWTQAILAAAEEEKSPVILGVSEG--AARHMTGF--KTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDA 99 (285)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcc--hhhhcCCH--HHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHc
Confidence 4455654 445567788877676321 11110111 011235555555554 8999875433 56888999999
Q ss_pred CCCEEE--eCCCCCch-------hHHHHHHhcCCCCc----E--EE-------e--cCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 114 GIDYVD--ESEVLTPA-------DEENHINKHNFRIP----F--VC-------G--CRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 114 Gad~Vi--~~~~~~~~-------~~~~~i~~~~~~i~----~--~v-------~--~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
|.+-|- .+. ++.+ ++.++....+..+. . .. . .+++++|.+-. +.|+|.+.+.-.
T Consensus 100 GftSVM~DgS~-lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiG 178 (285)
T PRK07709 100 GFTSVMIDASH-HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALG 178 (285)
T ss_pred CCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeec
Confidence 999993 443 3322 33344433221110 0 00 0 35778888855 468888775421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+--| .++ ....-+++.++++++.+++|+++=.+.|+ ..+++.++.+.|..=
T Consensus 179 t~HG-----------------~Y~-----------~~p~L~~~~L~~I~~~~~iPLVLHGgSG~-~~e~~~~ai~~Gi~K 229 (285)
T PRK07709 179 SVHG-----------------PYK-----------GEPNLGFAEMEQVRDFTGVPLVLHGGTGI-PTADIEKAISLGTSK 229 (285)
T ss_pred cccc-----------------CcC-----------CCCccCHHHHHHHHHHHCCCEEEeCCCCC-CHHHHHHHHHcCCeE
Confidence 1101 010 01233578899998888999885456666 468999999999999
Q ss_pred EEEccccccCCCHHHHHHHHHHHHh
Q 021609 249 VFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 249 V~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|=++|.+.. ...+.+.+.+.
T Consensus 230 iNi~T~l~~-----a~~~~~~~~~~ 249 (285)
T PRK07709 230 INVNTENQI-----EFTKAVREVLN 249 (285)
T ss_pred EEeChHHHH-----HHHHHHHHHHH
Confidence 999998874 33444544443
|
|
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.008 Score=52.13 Aligned_cols=57 Identities=25% Similarity=0.516 Sum_probs=49.8
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~ 264 (310)
.+++.+++..+.....-||+ .+|||+..+|+..+..+|++||+||+++.+-..|.+.
T Consensus 166 ~G~~~E~l~~~~~~s~~pVl--lGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~ 222 (229)
T COG1411 166 SGPDYELLTKVLELSEHPVL--LGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEV 222 (229)
T ss_pred cCCCHHHHHHHHHhccCcee--ecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHH
Confidence 35678888888887788998 5899999999999989999999999999998787654
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.005 Score=55.19 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=42.5
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
..++++++.+...+|+. ..|||++.+|+.+++..||+-|++||..++ ||.
T Consensus 61 n~~~i~~i~~~~~~~i~--vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~--~~~ 110 (229)
T PF00977_consen 61 NLELIKEIAKETGIPIQ--VGGGIRSIEDAERLLDAGADRVVIGTEALE--DPE 110 (229)
T ss_dssp HHHHHHHHHHHSSSEEE--EESSE-SHHHHHHHHHTT-SEEEESHHHHH--CCH
T ss_pred HHHHHHHHHhcCCccEE--EeCccCcHHHHHHHHHhCCCEEEeChHHhh--chh
Confidence 46788888887789998 589999999999999999999999999997 665
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.87 Score=42.19 Aligned_cols=182 Identities=15% Similarity=0.183 Sum_probs=107.9
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+..-|+++.+. ..+. .|. ......++...+...+||.+.+--+ .++.+..+.++|.
T Consensus 24 Nv~n~e~~~avi~AAee~~sPvIlq~~~~--~~~~-~g~--~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~Gf 98 (284)
T PRK12857 24 NCNNMEIVQAIVAAAEAEKSPVIIQASQG--AIKY-AGI--EYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGF 98 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEechh--Hhhh-CCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 4455554 445567777766666321 1111 111 0012345556677899999875433 4678899999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCCCC----cEE---------E--e--cCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNFRI----PFV---------C--G--CRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~~i----~~~---------v--~--~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- ++. ++.+ ++.++....+..+ -.+ . + -++++++.+-. +.|+|.+.+.-.
T Consensus 99 tSVM~DgS~-lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiG 177 (284)
T PRK12857 99 TSVMIDGSK-LPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIG 177 (284)
T ss_pred CeEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccC
Confidence 9993 443 3322 3333333322100 000 0 0 34667777754 468887765421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+ -| ..++ ....-+++.++++++..++|++.=.+.|+ ..+++.++.+.|..=
T Consensus 178 t--~H---------------G~y~-----------~~p~Ld~~~L~~i~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~K 228 (284)
T PRK12857 178 T--AH---------------GPYK-----------GEPKLDFDRLAKIKELVNIPIVLHGSSGV-PDEAIRKAISLGVRK 228 (284)
T ss_pred c--cc---------------cccC-----------CCCcCCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcCCeE
Confidence 1 11 0000 01233588999998888999876567787 479999999999999
Q ss_pred EEEcccccc
Q 021609 249 VFVGSGVFK 257 (310)
Q Consensus 249 V~VGsai~~ 257 (310)
|=++|.+..
T Consensus 229 iNi~T~~~~ 237 (284)
T PRK12857 229 VNIDTNIRE 237 (284)
T ss_pred EEeCcHHHH
Confidence 999998875
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.046 Score=49.15 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=42.4
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
...+.++++.+....|+- ..|||+|.+|+.+++..||+-|++||..++ ||.
T Consensus 60 ~n~~~i~~i~~~~~~~v~--vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~--~p~ 110 (232)
T PRK13586 60 NNEMYIKEISKIGFDWIQ--VGGGIRDIEKAKRLLSLDVNALVFSTIVFT--NFN 110 (232)
T ss_pred chHHHHHHHHhhCCCCEE--EeCCcCCHHHHHHHHHCCCCEEEECchhhC--CHH
Confidence 346778888773334888 589999999999999999999999999997 774
|
|
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.037 Score=48.36 Aligned_cols=169 Identities=21% Similarity=0.272 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC--cHHHHHHHHHcCCCEE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG--HFVEAQILEAIGIDYV 118 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~--~~~~a~~~~~aGad~V 118 (310)
+++++.|..+.+.|++.+ +.+.| .|.+..+++..+++.+.+. |..+..+.+ ..+..+.+.+.+.|.|
T Consensus 6 i~~~~da~~~~~~g~d~~Gfi~~~---------~S~R~v~~~~a~~l~~~~~-~~~VgVf~~~~~~~I~~~~~~~~ld~v 75 (197)
T PF00697_consen 6 ITRPEDARLAAELGADYLGFIFYP---------KSPRYVSPDQARELVSAVP-PKIVGVFVNQSPEEILEIVEELGLDVV 75 (197)
T ss_dssp --SHHHHHHHHHHTSSEEEEE--T---------TCTTB--HHHHHHHHCCSS-SSEEEEESSS-HHHHHHHHHHCTESEE
T ss_pred CCcHHHHHHHHHcCCCEEeeecCC---------CCCCccCHHHHHHHHHhcC-CCEEEEEcCCCHHHHHHHHHHcCCCEE
Confidence 578899999999999987 33311 1223345788888877665 324433333 2344577888999999
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEec-CCHHHHHHHHHh-CCCEEEEcCC-CCCcchHHHHHHHHhhccceEeecccC
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGC-RNLGEALRRIRE-GAAMIRTKGE-AGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~-~t~~ea~~~~~~-Gad~V~v~g~-~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
-.+... +.+....++. ...+.-.+.+ .+.+....+... ..|++-+.+. +++|.
T Consensus 76 QLHG~e-~~e~~~~l~~-~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~---------------------- 131 (197)
T PF00697_consen 76 QLHGDE-SPEYIKLLRA-GLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGK---------------------- 131 (197)
T ss_dssp EE-SGG--HHHHHHHHT-TSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS----------------------
T ss_pred EECCCC-CHHHHHHhhc-CceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCc----------------------
Confidence 433322 5555555542 2222212222 212112222222 2266666643 23442
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccC
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS 258 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a 258 (310)
.-+|++++.+.+. .+.|++ .+||| +++++.++++ .++.||=+.|.+=.+
T Consensus 132 -----------~~dw~~~~~~~~~~~~~p~i--LAGGl-~p~NV~~ai~~~~p~gvDvsSGvE~~ 182 (197)
T PF00697_consen 132 -----------TFDWSLLKKIVESYSPKPVI--LAGGL-NPENVREAIRQVRPYGVDVSSGVETS 182 (197)
T ss_dssp --------------GGGGCCCHHT-GTSTEE--EESS---TTTHHHHHHHC--SEEEESGGGEEE
T ss_pred -----------ccCHHHhhhhhhhcccCcEE--EEcCC-ChHHHHHHHHhcCceEEEeCCccccC
Confidence 1123333334331 257998 46999 7999999997 899999999999875
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.98 Score=40.48 Aligned_cols=185 Identities=20% Similarity=0.182 Sum_probs=103.6
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--Ccceeec--cccC-c---HHHHHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAK--ARIG-H---FVEAQIL 110 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk--~~~~-~---~~~a~~~ 110 (310)
..++.+.+.|..+.++|+|.| ++ ++.. .|+--...+..+++|++.+ ..|++.- +... . ...+...
T Consensus 4 LvSv~~~~EA~~a~~~gaDiI-D~----K~P~--~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~ 76 (235)
T PF04476_consen 4 LVSVRNVEEAEEALAGGADII-DL----KNPA--EGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGA 76 (235)
T ss_pred eecCCCHHHHHHHHhCCCCEE-Ec----cCCC--CCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 567888999999999999965 87 2222 2332234578888888776 3788774 2221 1 1222334
Q ss_pred HHcCCCEE-EeCCCC-CchhHH-------HHHHhcCCCCc-EEEecCC--------HHHHH-HHHHhCCCEEEEcCCCCC
Q 021609 111 EAIGIDYV-DESEVL-TPADEE-------NHINKHNFRIP-FVCGCRN--------LGEAL-RRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 111 ~~aGad~V-i~~~~~-~~~~~~-------~~i~~~~~~i~-~~v~~~t--------~~ea~-~~~~~Gad~V~v~g~~~~ 171 (310)
...|+|+| ++-... ...+.. +.++....+.. +.+.-.+ +-+.. .+.++|++.+.+......
T Consensus 77 a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kd 156 (235)
T PF04476_consen 77 AATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKD 156 (235)
T ss_pred HhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCC
Confidence 45899999 533221 222222 22322222322 2222112 22332 356789998887655433
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+. +.+..++.+++ .+++...++. .+-+- .+|-+ ..+|+..+...++|.+-+
T Consensus 157 g~---------------~L~d~~~~~~L----------~~Fv~~ar~~-gL~~a--LAGSL-~~~di~~L~~l~pD~lGf 207 (235)
T PF04476_consen 157 GG---------------SLFDHLSEEEL----------AEFVAQARAH-GLMCA--LAGSL-RFEDIPRLKRLGPDILGF 207 (235)
T ss_pred CC---------------chhhcCCHHHH----------HHHHHHHHHc-cchhh--ccccC-ChhHHHHHHhcCCCEEEe
Confidence 32 12222222211 2345545543 33332 35777 599999999999999999
Q ss_pred ccccccCC
Q 021609 252 GSGVFKSG 259 (310)
Q Consensus 252 Gsai~~a~ 259 (310)
=+++....
T Consensus 208 RGAvC~gg 215 (235)
T PF04476_consen 208 RGAVCGGG 215 (235)
T ss_pred chhhCCCC
Confidence 99988763
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.038 Score=55.62 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=42.1
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCH-----------HHHHHHHHcCCCEEEEccccccC
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATP-----------ADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~-----------~d~~~~l~~GadgV~VGsai~~a 258 (310)
++.++++.+...+|+- ..|||++. +++.+++.+|||-|++||+.++.
T Consensus 303 ~~~i~~i~~~~~ip~~--vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~~ 360 (538)
T PLN02617 303 LEVLRRASENVFVPLT--VGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVYA 360 (538)
T ss_pred HHHHHHHHhhCCCCEE--EcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHhC
Confidence 7788889888889998 68999997 66999999999999999999973
|
|
| >TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.36 Score=43.80 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=57.9
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHH-HH--hhcCcceeeccccCcHHHHHHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKE-IK--QSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~-i~--~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
|.+....++..++.+...|+|.+ +|++..+. +.+.+.. ++ +..+.++++.........++.+.+
T Consensus 15 g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~------------~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld 82 (249)
T TIGR02311 15 GLWLGLADPYAAEICAGAGFDWLLIDGEHAPN------------DVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLD 82 (249)
T ss_pred EEEEeCCCcHHHHHHHhcCCCEEEEeccCCCC------------CHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhC
Confidence 45667788899999999999998 57642221 1222222 22 234556666654444457889999
Q ss_pred cCCCEEEeCCCCCchhHHHHHHh
Q 021609 113 IGIDYVDESEVLTPADEENHINK 135 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i~~ 135 (310)
.|+++|+.+...++++..+.++.
T Consensus 83 ~Ga~gIivP~v~s~e~a~~~v~~ 105 (249)
T TIGR02311 83 IGAQTLLVPMIETAEQAEAAVAA 105 (249)
T ss_pred CCCCEEEecCcCCHHHHHHHHHH
Confidence 99999998877777766666554
|
This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon. |
| >PRK11750 gltB glutamate synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.026 Score=62.11 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=72.3
Q ss_pred cCCCEEE---eCCCCCchhHHHHHHh---cCCCCcEEEecC---CHHHHH-HHHHhCCCEEEEcCCC-CCcchHHHHHHH
Q 021609 113 IGIDYVD---ESEVLTPADEENHINK---HNFRIPFVCGCR---NLGEAL-RRIREGAAMIRTKGEA-GTGNIIEAVRHV 181 (310)
Q Consensus 113 aGad~Vi---~~~~~~~~~~~~~i~~---~~~~i~~~v~~~---t~~ea~-~~~~~Gad~V~v~g~~-~~~~~~~~~~~~ 181 (310)
-|.+.+. .++..+++++.+++.. ..++.++.+-.- ...+.. -++++|+|+|.+.|.. +|+...
T Consensus 964 ~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap------ 1037 (1485)
T PRK11750 964 PGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASP------ 1037 (1485)
T ss_pred CCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCccccc------
Confidence 4777764 2233467777666544 334455554421 222222 2457899999999874 455310
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHH-HH----HHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDL-VM----QTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~-i~----~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
.++ .+..+.|+++ +. .+.+. .++.++ ++||+.|+.|+.+++.+|||.+.+|+
T Consensus 1038 -----------~~~-------~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~--a~Ggl~t~~Dv~kA~aLGAd~~~~gt 1097 (1485)
T PRK11750 1038 -----------LTS-------VKYAGSPWELGLAETHQALVANGLRHKIRLQ--VDGGLKTGLDVIKAAILGAESFGFGT 1097 (1485)
T ss_pred -----------HHH-------HhhCCccHHHHHHHHHHHHHhcCCCcceEEE--EcCCcCCHHHHHHHHHcCCcccccch
Confidence 000 0123555443 32 22222 246665 89999999999999999999999998
Q ss_pred ccccC
Q 021609 254 GVFKS 258 (310)
Q Consensus 254 ai~~a 258 (310)
+.+-+
T Consensus 1098 ~~lia 1102 (1485)
T PRK11750 1098 GPMVA 1102 (1485)
T ss_pred HHHHH
Confidence 87644
|
|
| >COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.036 Score=54.60 Aligned_cols=120 Identities=21% Similarity=0.285 Sum_probs=70.4
Q ss_pred cCCCEEE---eCCCCCchhHHHHHHh-cC--CCCcEEE---ecCCHHHHHH-HHHhCCCEEEEcCC-CCCcchHHHHHHH
Q 021609 113 IGIDYVD---ESEVLTPADEENHINK-HN--FRIPFVC---GCRNLGEALR-RIREGAAMIRTKGE-AGTGNIIEAVRHV 181 (310)
Q Consensus 113 aGad~Vi---~~~~~~~~~~~~~i~~-~~--~~i~~~v---~~~t~~ea~~-~~~~Gad~V~v~g~-~~~~~~~~~~~~~ 181 (310)
-|.+.+. ..+..+++++.+++.. +. ..-.+.+ +.+..+.+.. .+++++|+|.+.|. ++||..
T Consensus 271 pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAs------- 343 (485)
T COG0069 271 PGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGAS------- 343 (485)
T ss_pred CCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCC-------
Confidence 6777764 2344567777666655 22 2222332 2334444444 56889999999987 456631
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHH-H----HHHhhc-C-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDL-V----MQTKQL-G-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~-i----~~i~~~-~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
+...+ +..+.||++ + +.+.+. . +.+.+ +++||++|+.|+.+++.+|||.|-+|++
T Consensus 344 --------------P~~~~---~~~GiP~e~glae~~q~L~~~glRd~v~l-~~~Ggl~Tg~DVaka~aLGAd~v~~gTa 405 (485)
T COG0069 344 --------------PLTSI---DHAGIPWELGLAETHQTLVLNGLRDKVKL-IADGGLRTGADVAKAAALGADAVGFGTA 405 (485)
T ss_pred --------------cHhHh---hcCCchHHHHHHHHHHHHHHcCCcceeEE-EecCCccCHHHHHHHHHhCcchhhhchH
Confidence 11110 123444432 1 112221 1 22333 3899999999999999999999999987
Q ss_pred ccc
Q 021609 255 VFK 257 (310)
Q Consensus 255 i~~ 257 (310)
-+-
T Consensus 406 ~li 408 (485)
T COG0069 406 ALV 408 (485)
T ss_pred HHH
Confidence 654
|
|
| >PRK01362 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.92 Score=40.28 Aligned_cols=174 Identities=20% Similarity=0.173 Sum_probs=99.6
Q ss_pred cccCCCHHHHHHHHHcCC-cEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC----cHHHHHHHHHc
Q 021609 39 IMDVVTPEQARVAEEAGA-CAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG----HFVEAQILEAI 113 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga-~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~----~~~~a~~~~~a 113 (310)
+.|-.+.+..+.+.+.|. +++ --||. ..+.. |. ...+.++++++..+-||.+..... ..++++.+.+.
T Consensus 4 ~lDsA~~~ei~~~~~~~~i~Gv-TTNPs--ll~k~-g~---~~~~~~~~i~~~i~g~vs~qv~~~d~~~m~~~a~~l~~~ 76 (214)
T PRK01362 4 FIDTANVEEIKEANELGVLDGV-TTNPS--LIAKE-GR---DFEEVIKEICSIVDGPVSAEVIALDAEGMIKEGRELAKI 76 (214)
T ss_pred EEecCCHHHHHHHHhCCCcceE-cCCHH--HHHhc-CC---CHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHh
Confidence 345556777777777775 454 44432 22221 21 124677777776666666543322 24566777777
Q ss_pred CCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccceEe
Q 021609 114 GIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 114 Gad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
+-+.++ ++...+=....+.+++. ++.+.+ .+-+.+.+..+.++|++||... |+..
T Consensus 77 ~~~i~iKIP~T~~G~~a~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~-------------------- 134 (214)
T PRK01362 77 APNVVVKIPMTPEGLKAVKALSKE--GIKTNVTLIFSANQALLAAKAGATYVSPFVGRLD-------------------- 134 (214)
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHC--CCceEEeeecCHHHHHHHHhcCCcEEEeecchHh--------------------
Confidence 655555 44322222334444443 544433 3789999999999999999864 2210
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhhc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.. ...+.+.++++.+. .+.-|+ ...++++.++.++..+|||.+-++-.+++
T Consensus 135 --d~-----------g~dg~~~i~~~~~~~~~~~~~tkil---aAS~r~~~~v~~~~~~G~d~iTi~~~vl~ 190 (214)
T PRK01362 135 --DI-----------GTDGMELIEDIREIYDNYGFDTEII---AASVRHPMHVLEAALAGADIATIPYKVIK 190 (214)
T ss_pred --hc-----------CCCHHHHHHHHHHHHHHcCCCcEEE---EeecCCHHHHHHHHHcCCCEEecCHHHHH
Confidence 00 11223333333221 134444 47889999999999999999987754443
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.2 Score=41.80 Aligned_cols=185 Identities=13% Similarity=0.103 Sum_probs=105.5
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccC-cHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIG-HFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~-~~~~a~~~~~aG 114 (310)
++.+.++ .+++++.+..-|+++.+. ..+. .|. ......++.+.+... +||.+.+--+ .++.+..+.++|
T Consensus 23 N~~n~e~~~avi~AAe~~~sPvIlq~s~~--~~~~-~g~--~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~G 97 (307)
T PRK05835 23 NFVNFEMLNAIFEAGNEENSPLFIQASEG--AIKY-MGI--DMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAG 97 (307)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcc--HHhh-CCh--HHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcC
Confidence 3445554 445566777766665321 1111 111 001234555556665 9999975433 578889999999
Q ss_pred CCEEE--eCCCCCc-------hhHHHHHHhcCCCC----cEE-----------Ee--cCCHHHHHHHH-HhCCCEEEEcC
Q 021609 115 IDYVD--ESEVLTP-------ADEENHINKHNFRI----PFV-----------CG--CRNLGEALRRI-REGAAMIRTKG 167 (310)
Q Consensus 115 ad~Vi--~~~~~~~-------~~~~~~i~~~~~~i----~~~-----------v~--~~t~~ea~~~~-~~Gad~V~v~g 167 (310)
.+-|- .+. ++. .++.++....+..+ -.+ .+ -+++++|.+-. +.|+|.+.+.-
T Consensus 98 ftSVM~DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvai 176 (307)
T PRK05835 98 FTSVMIDASH-HAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAI 176 (307)
T ss_pred CCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEcc
Confidence 99993 443 222 23334443332110 000 00 34567887755 46888877542
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCH------------
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATP------------ 235 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~------------ 235 (310)
.+ -| ..++..+ ...-+++.++++++.+++|+++=.+.|+..-
T Consensus 177 Gt--~H---------------G~Yk~~~---------~p~L~f~~L~~I~~~~~iPLVLHGgSGip~e~~~~~~~~g~~~ 230 (307)
T PRK05835 177 GT--SH---------------GAFKFKG---------EPKLDFERLQEVKRLTNIPLVLHGASAIPDDVRKSYLDAGGDL 230 (307)
T ss_pred Cc--cc---------------cccCCCC---------CCccCHHHHHHHHHHhCCCEEEeCCCCCchHHhhhhhhhcccc
Confidence 11 11 0010000 1123588899998888999885445555321
Q ss_pred --------HHHHHHHHcCCCEEEEcccccc
Q 021609 236 --------ADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 236 --------~d~~~~l~~GadgV~VGsai~~ 257 (310)
+++.++...|..=|=+++.+..
T Consensus 231 ~~~~g~~~e~~~kai~~GI~KiNi~T~l~~ 260 (307)
T PRK05835 231 KGSKGVPFEFLQESVKGGINKVNTDTDLRI 260 (307)
T ss_pred ccccCCCHHHHHHHHHcCceEEEeChHHHH
Confidence 3899999999999999998874
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.063 Score=51.21 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=62.8
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC------CCCc--hhHHHHHHh-cCCCCcEEEe--cCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE------VLTP--ADEENHINK-HNFRIPFVCG--CRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~------~~~~--~~~~~~i~~-~~~~i~~~v~--~~t~ 149 (310)
-+.++.+++.+++||++|... ..++++.+.++|+|+|+.+. +..+ .+....+.+ .+..++++++ +.+.
T Consensus 212 W~dl~wlr~~~~~PvivKgV~-~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G 290 (366)
T PLN02979 212 WKDVQWLQTITKLPILVKGVL-TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRG 290 (366)
T ss_pred HHHHHHHHhccCCCEEeecCC-CHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcH
Confidence 378888999999999999874 46889999999999996321 1112 222222222 2334777776 8999
Q ss_pred HHHHHHHHhCCCEEEEcC
Q 021609 150 GEALRRIREGAAMIRTKG 167 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~g 167 (310)
.|+.++..+|++.+.+..
T Consensus 291 ~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 291 TDVFKALALGASGIFIGR 308 (366)
T ss_pred HHHHHHHHcCCCEEEEcH
Confidence 999999999999998753
|
|
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.05 Score=48.38 Aligned_cols=77 Identities=31% Similarity=0.392 Sum_probs=60.6
Q ss_pred Ccc--cccCC-CHHHHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHH
Q 021609 36 GGV--IMDVV-TPEQARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 36 ~g~--i~~~~-~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~ 111 (310)
.|+ +.+++ |+-.|+++++.|+.+++-|. ..-||.+ ..++..++-+++..++||++.-.+|.-.++-.+.
T Consensus 129 eGF~VlPY~~dD~v~arrLee~GcaavMPl~-------aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aM 201 (262)
T COG2022 129 EGFVVLPYTTDDPVLARRLEEAGCAAVMPLG-------APIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAM 201 (262)
T ss_pred CCCEEeeccCCCHHHHHHHHhcCceEecccc-------ccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHHHH
Confidence 554 33443 57889999999999986662 2234444 5678899999998999999999888777888899
Q ss_pred HcCCCEEE
Q 021609 112 AIGIDYVD 119 (310)
Q Consensus 112 ~aGad~Vi 119 (310)
+.|+|.|+
T Consensus 202 ElG~DaVL 209 (262)
T COG2022 202 ELGADAVL 209 (262)
T ss_pred hcccceee
Confidence 99999997
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.11 Score=51.69 Aligned_cols=114 Identities=11% Similarity=0.125 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE---e
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD---E 120 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi---~ 120 (310)
.+.++.+.++|++.| .++. .. |-. ....+.++.+++.+ ++|+++.. ....+.++.+.++|||+|- .
T Consensus 227 ~~ra~~Lv~aGVd~i-~~D~-----a~--g~~-~~~~~~i~~i~~~~~~~~vi~g~-~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 227 GGKAKALLDAGVDVL-VIDT-----AH--GHQ-VKMISAIKAVRALDLGVPIVAGN-VVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred HHHHHHHHHhCCCEE-EEeC-----CC--CCc-HHHHHHHHHHHHHCCCCeEEEec-cCCHHHHHHHHHhCCCEEEECCc
Confidence 478999999999987 4431 11 111 12257888888875 89999843 2356889999999999994 1
Q ss_pred C------CCC---Cch---hHHHHHHh-cCCCCcEEEe--cCCHHHHHHHHHhCCCEEEEcCC
Q 021609 121 S------EVL---TPA---DEENHINK-HNFRIPFVCG--CRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 121 ~------~~~---~~~---~~~~~i~~-~~~~i~~~v~--~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
+ ... ..+ .+.+..+. ...+++++++ +++..++.++..+|++.|.+.+.
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm~g~~ 359 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVGSW 359 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechh
Confidence 1 111 111 12222211 2347788886 89999999999999999988654
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.28 Score=42.54 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=78.7
Q ss_pred HHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEE-EecCCHHHHHHHHHh
Q 021609 82 QLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFV-CGCRNLGEALRRIRE 158 (310)
Q Consensus 82 ~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~-v~~~t~~ea~~~~~~ 158 (310)
+.++++.+.-=+||+...... ..+.++.+.+.|++.+- .....+..++.+.+++....+... ..+.+.+++..+.++
T Consensus 4 ~~~~~l~~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~ 83 (187)
T PRK07455 4 DWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAA 83 (187)
T ss_pred HHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHc
Confidence 455566554445665443322 23567888899999994 444455667777666543333233 345667899999999
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA 238 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~ 238 (310)
|+|++.+- ... .+.++ .++..+++.+ + | +.|++++
T Consensus 84 gAdgv~~p-~~~---------------------------------------~~~~~-~~~~~~~~~i-~--G-~~t~~e~ 118 (187)
T PRK07455 84 GAQFCFTP-HVD---------------------------------------PELIE-AAVAQDIPII-P--G-ALTPTEI 118 (187)
T ss_pred CCCEEECC-CCC---------------------------------------HHHHH-HHHHcCCCEE-c--C-cCCHHHH
Confidence 99998542 110 11111 2222345654 3 4 9999999
Q ss_pred HHHHHcCCCEEEE
Q 021609 239 AMMMQLGCDGVFV 251 (310)
Q Consensus 239 ~~~l~~GadgV~V 251 (310)
.++.+.|+|.+-+
T Consensus 119 ~~A~~~Gadyv~~ 131 (187)
T PRK07455 119 VTAWQAGASCVKV 131 (187)
T ss_pred HHHHHCCCCEEEE
Confidence 9999999999987
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.067 Score=47.25 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.+.++.+++..++||+ .-++|.++.++..++++|||+|.++...+. + ...+++.+..
T Consensus 61 ~~~~~~i~~~v~iPi~--~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~---~-~~~~~~~~~~ 117 (217)
T cd00331 61 LEDLRAVREAVSLPVL--RKDFIIDPYQIYEARAAGADAVLLIVAALD---D-EQLKELYELA 117 (217)
T ss_pred HHHHHHHHHhcCCCEE--ECCeecCHHHHHHHHHcCCCEEEEeeccCC---H-HHHHHHHHHH
Confidence 4566777776789998 457888888999999999999999988874 3 4445555443
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.3 Score=43.02 Aligned_cols=103 Identities=18% Similarity=0.206 Sum_probs=68.4
Q ss_pred HHHHHHHHHcCCCEEEeC-CCCCchhHHHHHHh-cCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHH
Q 021609 104 FVEAQILEAIGIDYVDES-EVLTPADEENHINK-HNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~~-~~~~~~~~~~~i~~-~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~ 180 (310)
.+.++.+.+.|+..+-.+ ......+..+.+.+ ++..+.++++ +.+.+++..+.++|++++.+-+.
T Consensus 25 ~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~------------ 92 (206)
T PRK09140 25 LAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT------------ 92 (206)
T ss_pred HHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC------------
Confidence 355788889999998433 22333344444444 3334677775 77889999999999999864211
Q ss_pred HHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+.+..+... ..+.|++ =|+.|++++.++.+.|+|.+.+
T Consensus 93 ----------------------------~~~v~~~~~-~~~~~~~----~G~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 93 ----------------------------DPEVIRRAV-ALGMVVM----PGVATPTEAFAALRAGAQALKL 130 (206)
T ss_pred ----------------------------CHHHHHHHH-HCCCcEE----cccCCHHHHHHHHHcCCCEEEE
Confidence 112222222 2456765 2588999999999999999985
|
|
| >TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.36 Score=44.86 Aligned_cols=73 Identities=25% Similarity=0.342 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHcCCcEEEecc--------CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc------HHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALE--------RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH------FVEA 107 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~--------~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~------~~~a 107 (310)
+-|.=-|+.++++|++++ ... ..| |. +-..+......+++|.+.+++||++..--|+ ...+
T Consensus 22 ~~D~lSAri~e~aGf~ai-~~ss~~va~slG~p-D~---g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV 96 (290)
T TIGR02321 22 AHNPLVAKLAEQAGFGGI-WGSGFELSASYAVP-DA---NILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVV 96 (290)
T ss_pred ccCHHHHHHHHHcCCCEE-EECHHHHHHHCCCC-Cc---ccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHH
Confidence 345567888999999988 221 111 10 0000111235666677889999999632221 3557
Q ss_pred HHHHHcCCCEEE
Q 021609 108 QILEAIGIDYVD 119 (310)
Q Consensus 108 ~~~~~aGad~Vi 119 (310)
+.++++|+.++.
T Consensus 97 ~~~~~aGvagi~ 108 (290)
T TIGR02321 97 PQYEAAGASAIV 108 (290)
T ss_pred HHHHHcCCeEEE
Confidence 889999999995
|
This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2. |
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.074 Score=50.97 Aligned_cols=45 Identities=27% Similarity=0.452 Sum_probs=39.7
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
...|+.++++++..++||++ .||.+++|+.++.++|+|+|.|+..
T Consensus 210 ~~tW~di~wlr~~~~~Piiv---KgV~~~~dA~~a~~~Gvd~I~Vsnh 254 (367)
T PLN02493 210 TLSWKDVQWLQTITKLPILV---KGVLTGEDARIAIQAGAAGIIVSNH 254 (367)
T ss_pred CCCHHHHHHHHhccCCCEEe---ecCCCHHHHHHHHHcCCCEEEECCC
Confidence 34588899999989999983 8999999999999999999999754
|
|
| >PRK00042 tpiA triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.17 Score=46.05 Aligned_cols=42 Identities=31% Similarity=0.516 Sum_probs=32.7
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a 265 (310)
++||+ -+|+| +++++.+++ ..++||++||++-++++++....
T Consensus 203 ~~~Il--YGGSV-~~~N~~~l~~~~~vDG~LVG~Asl~~~~f~~ii 245 (250)
T PRK00042 203 KVRIL--YGGSV-KPDNAAELMAQPDIDGALVGGASLKAEDFLAIV 245 (250)
T ss_pred CceEE--EcCCC-CHHHHHHHhcCCCCCEEEEeeeeechHHHHHHH
Confidence 47888 47888 578877776 67999999999999866655443
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.16 Score=46.12 Aligned_cols=88 Identities=9% Similarity=0.211 Sum_probs=63.5
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc-cC-------Ch
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH-YS-------DP 278 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~-~~-------~~ 278 (310)
+..++.++.+++.+++||+ .-..|-++.++.++..+|||+|++--+++. +. ..+++.+..++ ++ ++
T Consensus 88 ~Gs~~~l~~v~~~v~~PvL--~KDFIid~~QI~ea~~~GADavLLI~~~L~---~~-~l~~l~~~a~~lGle~LVEVh~~ 161 (247)
T PRK13957 88 GGSLEDLKSVSSELKIPVL--RKDFILDEIQIREARAFGASAILLIVRILT---PS-QIKSFLKHASSLGMDVLVEVHTE 161 (247)
T ss_pred CCCHHHHHHHHHhcCCCEE--eccccCCHHHHHHHHHcCCCEEEeEHhhCC---HH-HHHHHHHHHHHcCCceEEEECCH
Confidence 3456778888888899999 689999999999999999999999888884 33 33444444433 22 22
Q ss_pred hhhhhhhhhcccchhcccCccch
Q 021609 279 EVLAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
+.+ +.....|..+.|+|-+|++
T Consensus 162 ~El-~~a~~~ga~iiGINnRdL~ 183 (247)
T PRK13957 162 DEA-KLALDCGAEIIGINTRDLD 183 (247)
T ss_pred HHH-HHHHhCCCCEEEEeCCCCc
Confidence 322 2345568899999988765
|
|
| >TIGR00419 tim triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.23 Score=43.84 Aligned_cols=149 Identities=23% Similarity=0.294 Sum_probs=80.3
Q ss_pred HHHHHHHHhhcCcceeecccc----C---cHHHHHHHHHcCCCEEEeCCC---CCchhHHHHHHh-cCCCCcEEEecCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARI----G---HFVEAQILEAIGIDYVDESEV---LTPADEENHINK-HNFRIPFVCGCRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~----~---~~~~a~~~~~aGad~Vi~~~~---~~~~~~~~~i~~-~~~~i~~~v~~~t~ 149 (310)
+-.+..+++.+++++..+.-. | -.-.++.+.++|++.++.-+. +...++.+.++. ...++.+++++...
T Consensus 41 ~~~L~~~~~~~~i~vgAQn~~~~~~Ga~TGevS~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi~~v 120 (205)
T TIGR00419 41 FVDLPMIKREVEIPVYAQHVDAVLSGAHTGEISAEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCTNNV 120 (205)
T ss_pred HHHHHHHHHhcCceEEecccccccCCCccCcCCHHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEEHHH
Confidence 445555555555666665311 1 124578899999999973332 333334433333 45678888887555
Q ss_pred HHHHHHHHhCCCEEEEcC-C-CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh-cCCCCEEE
Q 021609 150 GEALRRIREGAAMIRTKG-E-AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ-LGRLPVVH 226 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~g-~-~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~-~~~iPVi~ 226 (310)
.+.+........+|..-+ | .+||... ++++. ......++...+ ..+++|+
T Consensus 121 ~~q~~~~~~~~~vIAYEPvWAIGtG~~a-------------------s~~~~-------~~v~~~ir~~~~~~~~~~Il- 173 (205)
T TIGR00419 121 LTTAAAAALEPDVVAVEPPELIGTGIPV-------------------SPAQP-------EVVHGSVRAVKEVNESVRVL- 173 (205)
T ss_pred HHHHHhhhhcCeEEEECCHHHhCCCCCC-------------------CHHHH-------HHHHHHHHhhhhhcCCceEE-
Confidence 443333233334454332 2 2333210 11110 000122322222 1357888
Q ss_pred eCCCCCCCHHHHHHHH-HcCCCEEEEccccccC
Q 021609 227 FAAGGVATPADAAMMM-QLGCDGVFVGSGVFKS 258 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a 258 (310)
-+|+| +++++.+++ ..++||++||++-+++
T Consensus 174 -YGGSV-~~~N~~~l~~~~~iDG~LvG~Asl~a 204 (205)
T TIGR00419 174 -CGAGI-STGEDAELAAQLGAEGVLLASGSLKA 204 (205)
T ss_pred -EeCCC-CHHHHHHHhcCCCCCEEEEeeeeecC
Confidence 47888 577777766 6799999999998863
|
Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family. |
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.11 Score=49.81 Aligned_cols=85 Identities=16% Similarity=0.094 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--C--C----CchhHHHHHHhcCCCCcEEEe--cCCHH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE--V--L----TPADEENHINKHNFRIPFVCG--CRNLG 150 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~--~--~----~~~~~~~~i~~~~~~i~~~v~--~~t~~ 150 (310)
.+.++.+++.++.|+++|.. ...++++.+.++|+|+|+.+. . + .+.+....+.+ ..+++++++ +++..
T Consensus 225 w~~i~~ir~~~~~pviiKgV-~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~-~~~~~vi~dGGIr~g~ 302 (361)
T cd04736 225 WQDLRWLRDLWPHKLLVKGI-VTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVA-ATYKPVLIDSGIRRGS 302 (361)
T ss_pred HHHHHHHHHhCCCCEEEecC-CCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHH-HhCCeEEEeCCCCCHH
Confidence 35888999999999999975 456899999999999996221 1 1 11222222222 134677776 89999
Q ss_pred HHHHHHHhCCCEEEEcC
Q 021609 151 EALRRIREGAAMIRTKG 167 (310)
Q Consensus 151 ea~~~~~~Gad~V~v~g 167 (310)
|+.++..+|++.|.+..
T Consensus 303 Dv~KALaLGA~aV~iGr 319 (361)
T cd04736 303 DIVKALALGANAVLLGR 319 (361)
T ss_pred HHHHHHHcCCCEEEECH
Confidence 99999999999998753
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.07 Score=51.33 Aligned_cols=126 Identities=21% Similarity=0.307 Sum_probs=80.4
Q ss_pred ecc-CCccccc--ccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHH
Q 021609 61 ALE-RVPADIR--SQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHI 133 (310)
Q Consensus 61 ~L~-~~~~~~~--~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i 133 (310)
++| .+|+... ..-|..++++++-+..| .+...+|+.+|.|+-.. .+
T Consensus 111 diN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~s---------------------~e------ 163 (477)
T KOG2334|consen 111 DINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLDS---------------------KE------ 163 (477)
T ss_pred cccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecCC---------------------cc------
Confidence 666 5665433 33366677777755544 55678999999885310 00
Q ss_pred HhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHH
Q 021609 134 NKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLV 213 (310)
Q Consensus 134 ~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i 213 (310)
.|.+-.++....|+..+.+|++..-+. + ......+.+
T Consensus 164 -------------dtL~lv~ri~~tgi~ai~vh~rt~d~r-------------------~-----------~~~~~~~~i 200 (477)
T KOG2334|consen 164 -------------DTLKLVKRICATGIAAITVHCRTRDER-------------------N-----------QEPATKDYI 200 (477)
T ss_pred -------------cHHHHHHHHHhcCCceEEEEeeccccC-------------------C-----------CCCCCHHHH
Confidence 122345556677888899998753221 0 112334556
Q ss_pred HHHhhcCC-CCEEEeCCCCCCC---HHHHHHHH-HcCCCEEEEccccccC
Q 021609 214 MQTKQLGR-LPVVHFAAGGVAT---PADAAMMM-QLGCDGVFVGSGVFKS 258 (310)
Q Consensus 214 ~~i~~~~~-iPVi~iA~GGI~t---~~d~~~~l-~~GadgV~VGsai~~a 258 (310)
+.+....+ +||+ +.||+.+ ..|+.... ..|+++|++.++....
T Consensus 201 ~~i~~~~~~V~vi--~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n 248 (477)
T KOG2334|consen 201 REIAQACQMVPVI--VNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESN 248 (477)
T ss_pred HHHHHHhccceEe--eccchhhHHhhhhHHHHHHHhccchhhhhHhhhcC
Confidence 66655544 9998 7899988 66777766 5799999999877663
|
|
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.059 Score=46.24 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
..++++++..++|++ |+|=|.+.+|+.+++++||++|.-+
T Consensus 130 ~vi~~i~~~~~~PiI--AGGLI~~~e~v~~al~aGa~aVSTS 169 (175)
T PF04309_consen 130 KVIKKIREETNIPII--AGGLIRTKEDVEEALKAGADAVSTS 169 (175)
T ss_dssp HHHCCCCCCCSS-EE--EESS--SHHHHHHHCCTTCEEEEE-
T ss_pred HHHHHHHHhcCCCEE--eecccCCHHHHHHHHHcCCEEEEcC
Confidence 356666777789998 7888999999999999999999755
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.031 Score=51.04 Aligned_cols=45 Identities=22% Similarity=0.236 Sum_probs=39.9
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+.+.++++.+ .++||- .+|||++ +++.+++.+||+-|++||+.++
T Consensus 72 n~~~i~~i~~-~~~~vq--vGGGIR~-e~i~~~l~~Ga~rViigT~Av~ 116 (262)
T PLN02446 72 LAAALEALRA-YPGGLQ--VGGGVNS-ENAMSYLDAGASHVIVTSYVFR 116 (262)
T ss_pred cHHHHHHHHh-CCCCEE--EeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence 3667888887 778998 5899985 9999999999999999999997
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.096 Score=50.48 Aligned_cols=85 Identities=19% Similarity=0.105 Sum_probs=61.4
Q ss_pred HHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--C--C----CchhHHHH-HHhcCCCCcEEEe--cCCHH
Q 021609 82 QLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE--V--L----TPADEENH-INKHNFRIPFVCG--CRNLG 150 (310)
Q Consensus 82 ~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~--~--~----~~~~~~~~-i~~~~~~i~~~v~--~~t~~ 150 (310)
+.++.+++.++.|+++|... ..++++.+.++|+|+|+.+. . + +..+.... .+..+.+++++++ +.+..
T Consensus 235 ~di~~lr~~~~~pvivKgV~-s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~ 313 (381)
T PRK11197 235 KDLEWIRDFWDGPMVIKGIL-DPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGL 313 (381)
T ss_pred HHHHHHHHhCCCCEEEEecC-CHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHH
Confidence 45888999999999999874 45789999999999996221 1 1 11222222 2223345777776 89999
Q ss_pred HHHHHHHhCCCEEEEcC
Q 021609 151 EALRRIREGAAMIRTKG 167 (310)
Q Consensus 151 ea~~~~~~Gad~V~v~g 167 (310)
++.++..+|++.|.+..
T Consensus 314 Di~KALaLGA~~V~iGr 330 (381)
T PRK11197 314 DVVRMIALGADTVLLGR 330 (381)
T ss_pred HHHHHHHcCcCceeEhH
Confidence 99999999999998753
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.22 Score=45.36 Aligned_cols=95 Identities=15% Similarity=0.164 Sum_probs=48.5
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc-CCc-cccccc--CCCCCCCCHHHHHHHHhhcCcc-eeeccccC-c-------HH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE-RVP-ADIRSQ--GGVARMSDPQLIKEIKQSVTIP-VMAKARIG-H-------FV 105 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~-~~~-~~~~~~--~G~~~~~~~~~i~~i~~~~~iP-v~vk~~~~-~-------~~ 105 (310)
+..+-|...|+.++++|++.+. .- ... ...... +...+......++.+++.++.| +++...++ + ..
T Consensus 16 ~~~ayD~~sA~l~e~aG~d~i~-vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~ 94 (254)
T cd06557 16 MLTAYDYPTAKLADEAGVDVIL-VGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALR 94 (254)
T ss_pred EEeCCCHHHHHHHHHcCCCEEE-ECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHH
Confidence 3444567789999999999873 21 000 000000 0011111134556667778899 55544333 2 12
Q ss_pred HH-HHHHHcCCCEEEeCCCCCchhHHHHHH
Q 021609 106 EA-QILEAIGIDYVDESEVLTPADEENHIN 134 (310)
Q Consensus 106 ~a-~~~~~aGad~Vi~~~~~~~~~~~~~i~ 134 (310)
.+ +.+.++||++|-+-+..+..+.++.+.
T Consensus 95 ~a~r~~~~aGa~aVkiEd~~~~~~~I~al~ 124 (254)
T cd06557 95 NAARLMKEAGADAVKLEGGAEVAETIRALV 124 (254)
T ss_pred HHHHHHHHhCCeEEEEcCcHHHHHHHHHHH
Confidence 23 445559999996444433334444443
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=2.8 Score=43.05 Aligned_cols=185 Identities=12% Similarity=0.099 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHH-HHHHHhhcC---c-ceeeccccCcHHHHHHHHHcCC
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQL-IKEIKQSVT---I-PVMAKARIGHFVEAQILEAIGI 115 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~-i~~i~~~~~---i-Pv~vk~~~~~~~~a~~~~~aGa 115 (310)
+++.+.++.+.+.|+|.+ +.+. ..|.+.-+++. .+++.+... + +|.+-......+..+.+.+.+.
T Consensus 10 it~~eda~~a~~~gaD~iGfIf~---------~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~l 80 (610)
T PRK13803 10 IKDSALISKAVDMLPDFIGFIFY---------EKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGI 80 (610)
T ss_pred CCcHHHHHHHHHcCCCEEEEEec---------CCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCC
Confidence 678899999999999987 2221 11223334666 677765442 1 2222211122344567778999
Q ss_pred CEEEeCCCCC--chhHHHHHHhcCCCCcEEEecCCHHHHHHHHH--hCCCEEEEcCC----CCCcchHHHHHHHHhhccc
Q 021609 116 DYVDESEVLT--PADEENHINKHNFRIPFVCGCRNLGEALRRIR--EGAAMIRTKGE----AGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 116 d~Vi~~~~~~--~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~--~Gad~V~v~g~----~~~~~~~~~~~~~r~~~~~ 187 (310)
|.|-.+...+ ..+..+.+++....++-.+.+.+..+...+.+ .-+|++-+... +++|
T Consensus 81 d~vQLHG~e~~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG--------------- 145 (610)
T PRK13803 81 DFVQLHGAESKAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGSG--------------- 145 (610)
T ss_pred CEEEECCCCCcccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCCC---------------
Confidence 9994333333 13334444332222222222333222222221 13566655432 1222
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCC--EEEEccccccC---CCH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCD--GVFVGSGVFKS---GDP 261 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~Gad--gV~VGsai~~a---~dp 261 (310)
..-+|+.++.+. .+.|++ .+||| +++++.+++. .... ||=+.|.+=.+ +|+
T Consensus 146 ------------------~~fdw~~~~~~~--~~~p~i--LAGGL-~peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~ 202 (610)
T PRK13803 146 ------------------KSFDWEKFYNYN--FKFPFF--LSGGL-SPTNFDRIINLTHPQILGIDVSSGFEDSPGNKKL 202 (610)
T ss_pred ------------------CccChHHhhhcc--cCCcEE--EEeCC-CHHHHHHHHhhhCCCceEEEccCcccCCCCCcCH
Confidence 122355544332 246887 46999 7999999996 5667 99999999743 476
Q ss_pred HHHHHHHHHHHhc
Q 021609 262 VKRAQAIVRAVTH 274 (310)
Q Consensus 262 ~~~a~~l~~~i~~ 274 (310)
.+ .++|++.++.
T Consensus 203 ~k-i~~fi~~~k~ 214 (610)
T PRK13803 203 TL-LKSFITNVKK 214 (610)
T ss_pred HH-HHHHHHHHHH
Confidence 54 4557777765
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=2.2 Score=40.25 Aligned_cols=200 Identities=12% Similarity=0.115 Sum_probs=109.2
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCC-CHHHHHHHHhhc--CcceeeccccC-cHHHHHHHHH
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMS-DPQLIKEIKQSV--TIPVMAKARIG-HFVEAQILEA 112 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~-~~~~i~~i~~~~--~iPv~vk~~~~-~~~~a~~~~~ 112 (310)
++.+.+. .+++++.++.-|+++.+. ..+ +.|..... ....+....+.. .+||.+.+--+ .++.+..+.+
T Consensus 30 N~~n~e~~~avi~AAee~~sPvIlq~s~~--~~~-~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~ 106 (321)
T PRK07084 30 NFNNMEQLQAIIQACVETKSPVILQVSKG--ARK-YANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCID 106 (321)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEechh--HHh-hCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHH
Confidence 4445554 445566777766666311 111 11210000 112233334444 79999875433 5788899999
Q ss_pred cCCCEEE--eCCCCCch-------hHHHHHHhcCCCCc--E--E-----------EecCCHHHHHHHH-HhCCCEEEEcC
Q 021609 113 IGIDYVD--ESEVLTPA-------DEENHINKHNFRIP--F--V-----------CGCRNLGEALRRI-REGAAMIRTKG 167 (310)
Q Consensus 113 aGad~Vi--~~~~~~~~-------~~~~~i~~~~~~i~--~--~-----------v~~~t~~ea~~~~-~~Gad~V~v~g 167 (310)
+|.+-|- .+. ++.. ++.++....+..+. + + ..-+++++|.+-. +.|+|.+.+.-
T Consensus 107 ~GftSVMiD~S~-lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvai 185 (321)
T PRK07084 107 SGFSSVMIDGSH-LPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISI 185 (321)
T ss_pred cCCCEEEeeCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeecc
Confidence 9999993 333 3322 33344433221100 0 0 0034678888865 46888877542
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCC----------------
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAG---------------- 230 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~G---------------- 230 (310)
.+--| .++. .+.. -...-+++.++++++.. ++|++.=.+.
T Consensus 186 Gt~HG-----------------~Y~~-~~~~-----~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~ 242 (321)
T PRK07084 186 GTSHG-----------------AYKF-KPGQ-----CPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGK 242 (321)
T ss_pred ccccc-----------------cccC-CCCC-----CCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCc
Confidence 11100 0000 0000 01123588999998887 6998753333
Q ss_pred -----CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 231 -----GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 231 -----GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|+ ..+++.++++.|..=|=++|.+.. ...+.+.+.+.
T Consensus 243 ~~~~~Gi-~~e~~~kai~~GI~KINi~Tdl~~-----a~~~~~~~~l~ 284 (321)
T PRK07084 243 LKDAIGI-PEEQLRKAAKSAVCKINIDSDGRL-----AMTAAIRKVFD 284 (321)
T ss_pred cccCCCC-CHHHHHHHHHcCCceeccchHHHH-----HHHHHHHHHHH
Confidence 55 469999999999999999998874 34444555443
|
|
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.40 E-value=2.3 Score=39.63 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHH----HHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQ----LIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~----~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGa 115 (310)
+.++.+.+.|.++|+.+. . .|.....+.+ .++.+++.+ .+|+++...-.. .+.++.+.+.|+
T Consensus 29 ~lv~~li~~Gv~gi~~~G-------t-tGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga 100 (299)
T COG0329 29 RLVEFLIAAGVDGLVVLG-------T-TGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA 100 (299)
T ss_pred HHHHHHHHcCCCEEEECC-------C-CccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence 567788999999985441 1 1111111222 334444544 589998765432 466788899999
Q ss_pred CEEE-eCCC---CCchhHHHHHHh--cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceE
Q 021609 116 DYVD-ESEV---LTPADEENHINK--HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIR 189 (310)
Q Consensus 116 d~Vi-~~~~---~~~~~~~~~i~~--~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~ 189 (310)
|+++ .+.. .+...+.++++. ...+++ ++.-+-+..++... ..+.+.++... .
T Consensus 101 d~il~v~PyY~k~~~~gl~~hf~~ia~a~~lP--------------------vilYN~P~~tg~~l-~~e~i~~la~~-~ 158 (299)
T COG0329 101 DGILVVPPYYNKPSQEGLYAHFKAIAEAVDLP--------------------VILYNIPSRTGVDL-SPETIARLAEH-P 158 (299)
T ss_pred CEEEEeCCCCcCCChHHHHHHHHHHHHhcCCC--------------------EEEEeCccccCCCC-CHHHHHHHhcC-C
Confidence 9996 4433 234444444433 111222 22222222222100 11111111110 0
Q ss_pred eecccChhHHHHhhhccCCcHHHHHHHhhcCCC-CEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 190 VLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRL-PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~i-PVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.+.. .|+...+...+.++...... ..+++ +|. -+.+...+.+|++|++.+.+-+ .|... .+|
T Consensus 159 nivg---------iKd~~gd~~~~~~~~~~~~~~~f~v~-~G~---d~~~~~~~~~G~~G~is~~~N~---~p~~~-~~l 221 (299)
T COG0329 159 NIVG---------VKDSSGDLDRLEEIIAALGDRDFIVL-SGD---DELALPALLLGADGVISVTANV---APELA-VEL 221 (299)
T ss_pred CEEE---------EEeCCcCHHHHHHHHHhcCccCeeEE-eCc---hHHHHHHHhCCCCeEEeccccc---CHHHH-HHH
Confidence 0000 02334456666665443322 34432 333 3555555669999999998777 36544 447
Q ss_pred HHHHhcc
Q 021609 269 VRAVTHY 275 (310)
Q Consensus 269 ~~~i~~~ 275 (310)
.+..+++
T Consensus 222 ~~~~~~g 228 (299)
T COG0329 222 YRAAKAG 228 (299)
T ss_pred HHHHHcC
Confidence 7776665
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.67 Score=46.30 Aligned_cols=84 Identities=19% Similarity=0.057 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLT 125 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~ 125 (310)
+.|+.+.+.||+.| +++..++.. +.. .....++.+++.+++|+++... ..+.++.+.++|+|.|.-.....
T Consensus 169 ~~A~~~~~~GADII-DIG~~st~p----~~~--~v~~~V~~l~~~~~~pISIDT~--~~~v~eaAL~aGAdiINsVs~~~ 239 (499)
T TIGR00284 169 GLAARMERDGADMV-ALGTGSFDD----DPD--VVKEKVKTALDALDSPVIADTP--TLDELYEALKAGASGVIMPDVEN 239 (499)
T ss_pred HHHHHHHHCCCCEE-EECCCcCCC----cHH--HHHHHHHHHHhhCCCcEEEeCC--CHHHHHHHHHcCCCEEEECCccc
Confidence 67889999999965 886222111 000 0134666667667899987765 33778889999999985222223
Q ss_pred chhHHHHHHhcCC
Q 021609 126 PADEENHINKHNF 138 (310)
Q Consensus 126 ~~~~~~~i~~~~~ 138 (310)
..++...+.+++.
T Consensus 240 ~d~~~~l~a~~g~ 252 (499)
T TIGR00284 240 AVELASEKKLPED 252 (499)
T ss_pred hhHHHHHHHHcCC
Confidence 3345454544433
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.52 Score=43.50 Aligned_cols=121 Identities=18% Similarity=0.159 Sum_probs=78.5
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeC---
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDES--- 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~--- 121 (310)
...|+.+++.|+|.| +-. ...+ +..+.+..++..+++|+++..+ ..+++....+.|+|.|-.+
T Consensus 86 ~~Ea~~L~~~GvDiI-D~T---e~lr--------pad~~~~~~K~~f~~~fmad~~--~l~EAlrai~~GadmI~Ttge~ 151 (293)
T PRK04180 86 FVEAQILEALGVDYI-DES---EVLT--------PADEEYHIDKWDFTVPFVCGAR--NLGEALRRIAEGAAMIRTKGEA 151 (293)
T ss_pred HHHHHHHHHcCCCEE-ecc---CCCC--------chHHHHHHHHHHcCCCEEccCC--CHHHHHHHHHCCCCeeeccCCC
Confidence 467889999999966 420 0011 1136777778889999998876 4578888999999999543
Q ss_pred ----------------------CCC-------------CchhHHHHHHhcCCCCcEE----EecCCHHHHHHHHHhCCCE
Q 021609 122 ----------------------EVL-------------TPADEENHINKHNFRIPFV----CGCRNLGEALRRIREGAAM 162 (310)
Q Consensus 122 ----------------------~~~-------------~~~~~~~~i~~~~~~i~~~----v~~~t~~ea~~~~~~Gad~ 162 (310)
... .+.++.+.+.+. ..+|++ -+++|++++..+.++|++.
T Consensus 152 gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~-~~iPVV~~AeGGI~TPedaa~vme~GAdg 230 (293)
T PRK04180 152 GTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAEL-GRLPVVNFAAGGIATPADAALMMQLGADG 230 (293)
T ss_pred CCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHh-CCCCEEEEEeCCCCCHHHHHHHHHhCCCE
Confidence 001 122333444332 346654 3488999999999999999
Q ss_pred EEEcCCCC-CcchHHHHHH
Q 021609 163 IRTKGEAG-TGNIIEAVRH 180 (310)
Q Consensus 163 V~v~g~~~-~~~~~~~~~~ 180 (310)
|.+..... +.++.+..+.
T Consensus 231 VaVGSaI~ks~dP~~~aka 249 (293)
T PRK04180 231 VFVGSGIFKSGDPEKRARA 249 (293)
T ss_pred EEEcHHhhcCCCHHHHHHH
Confidence 98865432 3344433333
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.63 Score=43.15 Aligned_cols=176 Identities=16% Similarity=0.178 Sum_probs=92.7
Q ss_pred cCCCHHHHHHHHHc---------CCcEEEecc--------CCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-C
Q 021609 41 DVVTPEQARVAEEA---------GACAVMALE--------RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-G 102 (310)
Q Consensus 41 ~~~~~~~A~~~~~~---------Ga~~i~~L~--------~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-~ 102 (310)
.+-|.--|+.++++ |++++ .+. ..| |. +-..+......++.|...+++||++..-. +
T Consensus 15 ~~~D~~SA~~~e~~~~~~~~~~~Gf~ai-~~ss~~~a~s~G~p-D~---~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg 89 (285)
T TIGR02320 15 EAHNGLSALIAEEARVEVGGESLGFDGI-WSSSLTDSTSRGVP-DI---EEASWTQRLDVVEFMFDVTTKPIILDGDTGG 89 (285)
T ss_pred cCcCHHHHHHHHHhhhcccCcCCCcCEE-EechHHHHHHCCCC-Cc---CcCCHHHHHHHHHHHHhhcCCCEEEecCCCC
Confidence 34455668888889 99987 221 111 00 00001111345556677789999985322 3
Q ss_pred c----HHHHHHHHHcCCCEEEeCC-----------------CCCchhHHHHHHh---c--CCCCcEEEe------cCCHH
Q 021609 103 H----FVEAQILEAIGIDYVDESE-----------------VLTPADEENHINK---H--NFRIPFVCG------CRNLG 150 (310)
Q Consensus 103 ~----~~~a~~~~~aGad~Vi~~~-----------------~~~~~~~~~~i~~---~--~~~i~~~v~------~~t~~ 150 (310)
. ...++.+.++|+.++.+-| .++..+..+.++. . +.++.+++- ....+
T Consensus 90 ~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~ 169 (285)
T TIGR02320 90 NFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGME 169 (285)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHH
Confidence 2 3457888999999995311 1234444443333 1 234555444 12333
Q ss_pred H----HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh-cCCCCEE
Q 021609 151 E----ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ-LGRLPVV 225 (310)
Q Consensus 151 e----a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~-~~~iPVi 225 (310)
+ +++..++|||.+.+.+... + .+++ ..+.+.+.. ..++|++
T Consensus 170 eAi~Ra~ay~eAGAD~ifv~~~~~--~----------------------~~ei----------~~~~~~~~~~~p~~pl~ 215 (285)
T TIGR02320 170 DALKRAEAYAEAGADGIMIHSRKK--D----------------------PDEI----------LEFARRFRNHYPRTPLV 215 (285)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCC--C----------------------HHHH----------HHHHHHhhhhCCCCCEE
Confidence 4 3344578999988763211 1 0111 112222221 1246887
Q ss_pred EeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 226 ~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+. .+ -...-++.++.++|+.-|..|..+++
T Consensus 216 ~~-~~-~~~~~~~~eL~~lG~~~v~~~~~~~~ 245 (285)
T TIGR02320 216 IV-PT-SYYTTPTDEFRDAGISVVIYANHLLR 245 (285)
T ss_pred Ee-cC-CCCCCCHHHHHHcCCCEEEEhHHHHH
Confidence 43 22 11112466667899999999988885
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.92 Score=42.12 Aligned_cols=190 Identities=14% Similarity=0.175 Sum_probs=109.2
Q ss_pred HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE--eCCC
Q 021609 47 QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD--ESEV 123 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi--~~~~ 123 (310)
..+++++.+...|+++.+. ..+..+ . ......++.+.+..++||.+.+--+ ..+.++.+.++|.+-|- .+.
T Consensus 33 vi~AAe~~~sPvIlq~~~~--~~~~~~-~--~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS~- 106 (287)
T PF01116_consen 33 VIEAAEELNSPVILQISPS--EVKYMG-L--EYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGSA- 106 (287)
T ss_dssp HHHHHHHTTS-EEEEEEHH--HHHHHH-H--HHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TT-
T ss_pred HHHHHHHhCCCEEEEcchh--hhhhhh-H--HHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCcccccccCCc-
Confidence 3456677888877666311 111111 0 0113466666777899999874322 46888999999999993 333
Q ss_pred CCch-------hHHHHHHhcCC------CCcE----EE--------ecCCHHHHHHHH-HhCCCEEEEcCCCCCcchHHH
Q 021609 124 LTPA-------DEENHINKHNF------RIPF----VC--------GCRNLGEALRRI-REGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 124 ~~~~-------~~~~~i~~~~~------~i~~----~v--------~~~t~~ea~~~~-~~Gad~V~v~g~~~~~~~~~~ 177 (310)
++.. ++.++.+..+. |..- .. -.++++++.+-. +.|+|.+.+.-...-|
T Consensus 107 l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG----- 181 (287)
T PF01116_consen 107 LPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHG----- 181 (287)
T ss_dssp S-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSS-----
T ss_pred CCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcccc-----
Confidence 3322 33444443321 1000 00 024678888754 6799988765221101
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
.++. .+...-+++.++++++.. ++|++.=.+.|+ ..+++.++.+.|..=|=++|.+.
T Consensus 182 ------------~y~~---------~~~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T~~~ 239 (287)
T PF01116_consen 182 ------------MYKG---------GKKPKLDFDRLKEIREAVPDIPLVLHGGSGL-PDEQIRKAIKNGISKINIGTELR 239 (287)
T ss_dssp ------------SBSS---------SSSTC--HHHHHHHHHHHHTSEEEESSCTTS--HHHHHHHHHTTEEEEEESHHHH
T ss_pred ------------ccCC---------CCCcccCHHHHHHHHHhcCCCCEEEECCCCC-CHHHHHHHHHcCceEEEEehHHH
Confidence 0000 001223588999999988 999985455666 46899999999999999999888
Q ss_pred cCCCHHHHHHHHHHHHhc
Q 021609 257 KSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 257 ~a~dp~~~a~~l~~~i~~ 274 (310)
. ...+.+.+.+++
T Consensus 240 ~-----a~~~~~~~~~~~ 252 (287)
T PF01116_consen 240 R-----AFTDALREYLAE 252 (287)
T ss_dssp H-----HHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHh
Confidence 4 334444444444
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.12 Score=45.46 Aligned_cols=65 Identities=23% Similarity=0.203 Sum_probs=50.6
Q ss_pred HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 47 QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.|.+.+..|++++ .|. ...|.....+++.++++++.+++|+.+...+...++++.+.++|||.|+
T Consensus 139 ~a~aa~~~G~~~i-~Le-------~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VV 203 (205)
T TIGR01769 139 YCLAAKYFGMKWV-YLE-------AGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIV 203 (205)
T ss_pred HHHHHHHcCCCEE-EEE-------cCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 4556677899987 552 1123333456899999999999999999888888999999999999985
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.2 Score=46.59 Aligned_cols=121 Identities=14% Similarity=0.072 Sum_probs=67.0
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccCCCCCCCCHHHHHHHHhhc----CcceeeccccC------c---HHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQGGVARMSDPQLIKEIKQSV----TIPVMAKARIG------H---FVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~G~~~~~~~~~i~~i~~~~----~iPv~vk~~~~------~---~~~a~~~ 110 (310)
..++.++++|+.+| .++.+ |+......|.......+.+++|+... +.++.+.-|.. . .+.++.+
T Consensus 96 r~V~~~~~aGaagi-~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY 174 (294)
T TIGR02319 96 RATREFERVGIVGY-HLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREY 174 (294)
T ss_pred HHHHHHHHcCCeEE-EEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHH
Confidence 46899999999997 77533 22111111222233345666664332 34566653332 1 3567888
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcCCCC-cEEEec-CCH-HHHHHHHHhCCCEEEEcC
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHNFRI-PFVCGC-RNL-GEALRRIREGAAMIRTKG 167 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i-~~~v~~-~t~-~ea~~~~~~Gad~V~v~g 167 (310)
.++|||.|......++.++.+..+....-+ .+++.. .++ -....+.++|+++|....
T Consensus 175 ~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~ 234 (294)
T TIGR02319 175 VAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIYPL 234 (294)
T ss_pred HHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcH
Confidence 999999997655455666666655422112 122221 111 235556788999887653
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.082 Score=47.50 Aligned_cols=83 Identities=16% Similarity=0.214 Sum_probs=57.5
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHH
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVE 106 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~ 106 (310)
.|+...++-+. ......+.|++++++|+++| .++ .+..++ ...+.+.++++++.++ +||+.+..+...++
T Consensus 135 ~PVsvKiR~~~-~~~~~~~~a~~l~~aGad~i-~Vd-----~~~~g~--~~a~~~~I~~i~~~~~~ipIIgNGgI~s~ed 205 (231)
T TIGR00736 135 KPIFVKIRGNC-IPLDELIDALNLVDDGFDGI-HVD-----AMYPGK--PYADMDLLKILSEEFNDKIIIGNNSIDDIES 205 (231)
T ss_pred CcEEEEeCCCC-CcchHHHHHHHHHHcCCCEE-EEe-----eCCCCC--chhhHHHHHHHHHhcCCCcEEEECCcCCHHH
Confidence 35555444442 22334589999999999998 332 111111 0124688999999985 99999887777889
Q ss_pred HHHHHHcCCCEEE
Q 021609 107 AQILEAIGIDYVD 119 (310)
Q Consensus 107 a~~~~~aGad~Vi 119 (310)
+..+.+.|||+|-
T Consensus 206 a~e~l~~GAd~Vm 218 (231)
T TIGR00736 206 AKEMLKAGADFVS 218 (231)
T ss_pred HHHHHHhCCCeEE
Confidence 9888889999994
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=2.5 Score=40.39 Aligned_cols=174 Identities=14% Similarity=0.206 Sum_probs=99.3
Q ss_pred HHHHHHHHcCCcEEE-ec--cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeC
Q 021609 46 EQARVAEEAGACAVM-AL--ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~-~L--~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~ 121 (310)
+.|+.+.+.|+..+- .. ++.. ...|.|-. ..-++.++++++.+++|++.-.. +...++.+.+. +|.+ +.+
T Consensus 119 ~~A~~lk~~g~~~~r~g~~kpRts--p~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~--d~~~v~~~~~~-~d~lqIga 192 (352)
T PRK13396 119 ETAKRVKAAGAKFLRGGAYKPRTS--PYAFQGHG-ESALELLAAAREATGLGIITEVM--DAADLEKIAEV-ADVIQVGA 192 (352)
T ss_pred HHHHHHHHcCCCEEEeeeecCCCC--CcccCCch-HHHHHHHHHHHHHcCCcEEEeeC--CHHHHHHHHhh-CCeEEECc
Confidence 468888888888651 11 1111 01111111 12256777888889999985443 33566777777 8988 566
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe--cC-CHHHHHHHHH----hCCC-EEEEcCCCCCcchHHHHHHHHhhccceEeecc
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG--CR-NLGEALRRIR----EGAA-MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~--~~-t~~ea~~~~~----~Gad-~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
..+...++.+.+.+ .+.++++. .. |.+|...+++ .|.. ++-.+-.. |-|.
T Consensus 193 ~~~~n~~LL~~va~--t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~-------------------rtf~- 250 (352)
T PRK13396 193 RNMQNFSLLKKVGA--QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGI-------------------RTFD- 250 (352)
T ss_pred ccccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCC-------------------ccCc-
Confidence 66667777666654 45666665 33 8888777654 3663 44444211 0010
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCC--CCC--CHHHHHHHHHcCCCEEEEccc
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAG--GVA--TPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~G--GI~--t~~d~~~~l~~GadgV~VGsa 254 (310)
+. |. ....++..+..+++..++||++-++= |-+ .+.-...+..+||||+++=.=
T Consensus 251 -s~-----y~-~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H 308 (352)
T PRK13396 251 -RQ-----YT-RNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVH 308 (352)
T ss_pred -CC-----CC-CCCcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEec
Confidence 00 00 12345667777887778999864443 322 223344555789999997643
|
|
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.11 Score=48.60 Aligned_cols=85 Identities=29% Similarity=0.355 Sum_probs=61.4
Q ss_pred chhhhhhC-c--ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCC-CCCCHHHHHHHHhhcCcceeeccccCcH
Q 021609 29 GLAQMLRG-G--VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVA-RMSDPQLIKEIKQSVTIPVMAKARIGHF 104 (310)
Q Consensus 29 ~~~~~~~~-g--~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~~~~~~i~~i~~~~~iPv~vk~~~~~~ 104 (310)
+.+++++. | ++..+++.+.++.++++|+|.|+ +.. +..+|.. ...+...+.++++.+++||++...+...
T Consensus 100 ~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~Iv-v~g-----~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~ 173 (307)
T TIGR03151 100 KYIPRLKENGVKVIPVVASVALAKRMEKAGADAVI-AEG-----MESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADG 173 (307)
T ss_pred HHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEE-EEC-----cccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCH
Confidence 45565552 3 45677888999999999999983 210 1112221 1235789999999999999998888777
Q ss_pred HHHHHHHHcCCCEEE
Q 021609 105 VEAQILEAIGIDYVD 119 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi 119 (310)
.++..+...|||+|.
T Consensus 174 ~~~~~al~~GA~gV~ 188 (307)
T TIGR03151 174 RGMAAAFALGAEAVQ 188 (307)
T ss_pred HHHHHHHHcCCCEee
Confidence 778888889999995
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.26 Score=46.30 Aligned_cols=78 Identities=33% Similarity=0.430 Sum_probs=58.7
Q ss_pred Ccccc--cC-CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHH
Q 021609 36 GGVIM--DV-VTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 36 ~g~i~--~~-~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
.|+.. .+ .|+..++++++.|+.++. |.+..+..+.| ..+++.++.+.+..++||++.-.++.-+++..+.+
T Consensus 196 ~Gf~v~~yc~~d~~~a~~l~~~g~~avm---Pl~~pIGsg~g---v~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Ame 269 (326)
T PRK11840 196 EGFQVMVYCSDDPIAAKRLEDAGAVAVM---PLGAPIGSGLG---IQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAME 269 (326)
T ss_pred CCCEEEEEeCCCHHHHHHHHhcCCEEEe---eccccccCCCC---CCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHH
Confidence 55533 33 467899999999996552 22233332112 44899999999988999999998888889999999
Q ss_pred cCCCEEE
Q 021609 113 IGIDYVD 119 (310)
Q Consensus 113 aGad~Vi 119 (310)
.|+|+|+
T Consensus 270 lGadgVL 276 (326)
T PRK11840 270 LGCDGVL 276 (326)
T ss_pred cCCCEEE
Confidence 9999997
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=94.95 E-value=2.2 Score=40.54 Aligned_cols=173 Identities=20% Similarity=0.228 Sum_probs=100.3
Q ss_pred HHHHHHHHcCCcEEE-ec--cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeC
Q 021609 46 EQARVAEEAGACAVM-AL--ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~-~L--~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~ 121 (310)
+.|+.+.++|++.+- .. ++... ..|.|.. ..-++.+.+.++.+++|++.-.. +...++.+.+. +|.+ +.+
T Consensus 111 ~~A~~lk~~ga~~~r~~~fKpRTsp--~sf~G~g-~~gL~~L~~~~~~~Gl~v~tev~--d~~~~~~l~~~-vd~lqIgA 184 (335)
T PRK08673 111 EIARAVKEAGAQILRGGAFKPRTSP--YSFQGLG-EEGLKLLAEAREETGLPIVTEVM--DPRDVELVAEY-VDILQIGA 184 (335)
T ss_pred HHHHHHHHhchhhccCcEecCCCCC--ccccccc-HHHHHHHHHHHHHcCCcEEEeeC--CHHHHHHHHHh-CCeEEECc
Confidence 468888889988541 11 11110 1111111 12245777778889999986543 33566777777 8988 566
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe---cCCHHHHHHHHH----hCCC-EEEEc-CC-CCCcchHHHHHHHHhhccceEee
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG---CRNLGEALRRIR----EGAA-MIRTK-GE-AGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~---~~t~~ea~~~~~----~Gad-~V~v~-g~-~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
..+...++.+.+.+ .+.+++.. ..|.+|...+.+ .|.. ++-++ |. .+.+
T Consensus 185 r~~~N~~LL~~va~--~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~------------------- 243 (335)
T PRK08673 185 RNMQNFDLLKEVGK--TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFET------------------- 243 (335)
T ss_pred ccccCHHHHHHHHc--CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCC-------------------
Confidence 66777778777654 46677665 237788776654 3553 44344 11 2211
Q ss_pred cccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCC----HHHHHHHHHcCCCEEEEccccc
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVAT----PADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t----~~d~~~~l~~GadgV~VGsai~ 256 (310)
+ . ....++..+..+++...+||+...+=+.+. +.-...+..+||||+++=.-+.
T Consensus 244 -~-~---------~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~ 301 (335)
T PRK08673 244 -A-T---------RNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD 301 (335)
T ss_pred -c-C---------hhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence 0 0 012235556667776789997543333322 2455667789999999875443
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=2.9 Score=38.05 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=101.5
Q ss_pred HHHHHHHHcCCcEEE--ec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeC
Q 021609 46 EQARVAEEAGACAVM--AL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~--~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~ 121 (310)
+.|+.+.+.|+..+. .. |+.. ...|.|-.. .-++.+.++++.+++|++.-.. +...++.+.+ .+|.+ +.+
T Consensus 33 ~~a~~~~~~g~~~~r~g~~kpRts--~~sf~G~G~-~gl~~L~~~~~~~Gl~~~Tev~--d~~~v~~~~e-~vdilqIgs 106 (250)
T PRK13397 33 LAASSAKKLGYNYFRGGAYKPRTS--AASFQGLGL-QGIRYLHEVCQEFGLLSVSEIM--SERQLEEAYD-YLDVIQVGA 106 (250)
T ss_pred HHHHHHHHcCCCEEEecccCCCCC--CcccCCCCH-HHHHHHHHHHHHcCCCEEEeeC--CHHHHHHHHh-cCCEEEECc
Confidence 568888899988661 11 2111 111222211 2356777778889999986433 3456677766 69998 566
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe---cCCHHHHHHHHH----hCC-CEEEEc-CCCCCcchHHHHHHHHhhccceEeec
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG---CRNLGEALRRIR----EGA-AMIRTK-GEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~---~~t~~ea~~~~~----~Ga-d~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
..+...++.+.+.+ .+.+++++ ..+.+|...+.+ .|. +++.++ |. ++. +
T Consensus 107 ~~~~n~~LL~~va~--tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~--~~Y------------------~ 164 (250)
T PRK13397 107 RNMQNFEFLKTLSH--IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGV--RGY------------------D 164 (250)
T ss_pred ccccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc--CCC------------------C
Confidence 66677777777654 45666665 457777666543 466 455555 32 110 1
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCC--CCCCC--HHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~--GGI~t--~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
+.. ....++..+..+++..++||++-.+ +|.+. +.-...+..+||||+++= ++.||..
T Consensus 165 ~~~---------~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE----~H~~P~~ 226 (250)
T PRK13397 165 VET---------RNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMME----VHPDPDH 226 (250)
T ss_pred Ccc---------ccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEE----ecCCccc
Confidence 100 0123344566666666899984111 34322 233556668999999965 4566753
|
|
| >PRK12656 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.89 E-value=2.7 Score=37.55 Aligned_cols=175 Identities=14% Similarity=0.163 Sum_probs=99.8
Q ss_pred cccCCCHHHHHHHHHcC-CcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccC----cHHHHHHHH
Q 021609 39 IMDVVTPEQARVAEEAG-ACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIG----HFVEAQILE 111 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~G-a~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~----~~~~a~~~~ 111 (310)
+.|-.|.+..+.+.+.| .+++ --||. ..+..|.. ...+.++++++.. +.||.+...-. ..++++.+.
T Consensus 4 flDtAd~~~i~~~~~~~~i~Gv-TTNPs--ll~k~g~~---~~~~~~~~i~~~i~~~~~vs~ev~~~~~~~mi~eA~~l~ 77 (222)
T PRK12656 4 MLDTLNLEAIKKWHEILPLAGV-TSNPS--IAKKEGDI---DFFERIREVREIIGDEASIHVQVVAQDYEGILKDAHEIR 77 (222)
T ss_pred EEecCCHHHHHHHHhcCCcceE-eCCHH--HHHhcCCC---CHHHHHHHHHHHhCCCCcEEEEEEECCHHHHHHHHHHHH
Confidence 34556777777777766 3554 44432 22222211 2246777887765 34676553322 235566655
Q ss_pred -HcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccc
Q 021609 112 -AIGIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 112 -~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~ 187 (310)
..|-+.++ ++...+-....+.+.+. ++.+.+ -+.+.+.+..+.++|++||... |+.
T Consensus 78 ~~~~~nv~VKIP~T~~Gl~Ai~~L~~~--Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi------------------ 137 (222)
T PRK12656 78 RQCGDDVYIKVPVTPAGLAAIKTLKAE--GYHITATAIYTVFQGLLAIEAGADYLAPYYNRM------------------ 137 (222)
T ss_pred HHhCCCEEEEeCCCHHHHHHHHHHHHC--CCceEEeeeCCHHHHHHHHHCCCCEEecccchh------------------
Confidence 46755555 44332223334444443 444433 3789999999999999999764 221
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHh----hc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTK----QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~----~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
...+ ..+.+.+.++. .. .+.-|+ ..-++++.++.++..+|||.+-+.-.+++
T Consensus 138 ----~d~g-----------~D~~~~i~~i~~~~~~~~~~tkIL---aAS~r~~~~v~~a~~~G~d~vTvp~~vl~ 194 (222)
T PRK12656 138 ----ENLN-----------IDSNAVIGQLAEAIDRENSDSKIL---AASFKNVAQVNKAFALGAQAVTAGPDVFE 194 (222)
T ss_pred ----hhcC-----------CCHHHHHHHHHHHHHhcCCCCEEE---EEecCCHHHHHHHHHcCCCEEecCHHHHH
Confidence 0111 11223333322 21 244454 36789999999999999999988755554
|
|
| >PRK14565 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.42 Score=43.09 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=32.0
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~ 263 (310)
+++|+ -+|+| +++++..++. .+.||++||++.++++++..
T Consensus 189 ~~~Il--YGGSV-~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ 229 (237)
T PRK14565 189 KSHII--YGGSV-NQENIRDLKSINQLSGVLVGSASLDVDSFCK 229 (237)
T ss_pred CceEE--EcCcc-CHhhHHHHhcCCCCCEEEEechhhcHHHHHH
Confidence 57888 46888 6999999885 59999999999997555443
|
|
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.8 Score=39.63 Aligned_cols=141 Identities=16% Similarity=0.160 Sum_probs=86.9
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEec--C-CHHHHHHHH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESEVLTPADEENHINKHNFRIPFVCGC--R-NLGEALRRI 156 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~~--~-t~~ea~~~~ 156 (310)
++.+++.++..++|+..-.. +...++.+.+. +|.+ +.+..+...++.+.+.+ .+.+++++. . +.+|...+.
T Consensus 78 l~~l~~~~~~~Gl~~~t~~~--d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Av 152 (260)
T TIGR01361 78 LKLLRRAADEHGLPVVTEVM--DPRDVEIVAEY-ADILQIGARNMQNFELLKEVGK--QGKPVLLKRGMGNTIEEWLYAA 152 (260)
T ss_pred HHHHHHHHHHhCCCEEEeeC--ChhhHHHHHhh-CCEEEECcccccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHHHH
Confidence 45677778888999986543 33566777777 8988 45666677777777654 466777763 3 788877665
Q ss_pred H----hCC-CEEEEc-CC-CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeC-
Q 021609 157 R----EGA-AMIRTK-GE-AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFA- 228 (310)
Q Consensus 157 ~----~Ga-d~V~v~-g~-~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA- 228 (310)
+ .|. +++.++ |. .|.+ + .....++..+..+++..++||++.+
T Consensus 153 e~i~~~Gn~~i~l~~rG~s~y~~--------------------~----------~~~~~dl~~i~~lk~~~~~pV~~ds~ 202 (260)
T TIGR01361 153 EYILSSGNGNVILCERGIRTFEK--------------------A----------TRNTLDLSAVPVLKKETHLPIIVDPS 202 (260)
T ss_pred HHHHHcCCCcEEEEECCCCCCCC--------------------C----------CcCCcCHHHHHHHHHhhCCCEEEcCC
Confidence 4 466 444444 22 1101 0 0123456667777776689998411
Q ss_pred -CCCCCC--HHHHHHHHHcCCCEEEEccccc
Q 021609 229 -AGGVAT--PADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 229 -~GGI~t--~~d~~~~l~~GadgV~VGsai~ 256 (310)
++|-+. +.-...+..+||+|+++=+-+.
T Consensus 203 Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t 233 (260)
T TIGR01361 203 HAAGRRDLVIPLAKAAIAAGADGLMIEVHPD 233 (260)
T ss_pred CCCCccchHHHHHHHHHHcCCCEEEEEeCCC
Confidence 233111 4445567789999998776555
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.37 Score=43.57 Aligned_cols=34 Identities=32% Similarity=0.620 Sum_probs=29.8
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~ 257 (310)
++||+ -+|+| +++|+.+++..+ +||++||++-++
T Consensus 199 ~~~Il--YGGSV-~~~N~~~l~~~~~vDG~LVG~Asl~ 233 (242)
T cd00311 199 KVRIL--YGGSV-NPENAAELLAQPDIDGVLVGGASLK 233 (242)
T ss_pred ceeEE--ECCCC-CHHHHHHHhcCCCCCEEEeehHhhC
Confidence 57888 47888 579999999887 999999999996
|
The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.7 Score=42.34 Aligned_cols=95 Identities=13% Similarity=0.090 Sum_probs=47.5
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc-CCc-cccccc--CCCCCCCCHHHHHHHHhhcCcc-eeeccccC-c---HH----
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE-RVP-ADIRSQ--GGVARMSDPQLIKEIKQSVTIP-VMAKARIG-H---FV---- 105 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~-~~~-~~~~~~--~G~~~~~~~~~i~~i~~~~~iP-v~vk~~~~-~---~~---- 105 (310)
+...-|+..|+.++++|++.+. .- ... ...... ....+......++.+++.++.| |++...++ + .+
T Consensus 19 ~~tayD~~sArl~e~aG~d~i~-vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~ 97 (264)
T PRK00311 19 MLTAYDYPFAKLFDEAGVDVIL-VGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALR 97 (264)
T ss_pred EEeCCCHHHHHHHHHcCCCEEE-ECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHH
Confidence 3444567889999999999872 21 000 000000 0000111134556667777886 55554433 2 12
Q ss_pred H-HHHHHHcCCCEEEeCCCCCchhHHHHHH
Q 021609 106 E-AQILEAIGIDYVDESEVLTPADEENHIN 134 (310)
Q Consensus 106 ~-a~~~~~aGad~Vi~~~~~~~~~~~~~i~ 134 (310)
. .+.+.++||++|-+-+.....+.++.+.
T Consensus 98 ~a~r~~~~aGa~aVkiEdg~~~~~~I~al~ 127 (264)
T PRK00311 98 NAGRLMKEAGAHAVKLEGGEEVAETIKRLV 127 (264)
T ss_pred HHHHHHHHhCCeEEEEcCcHHHHHHHHHHH
Confidence 2 3444559999995444323333344443
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.6 Score=43.00 Aligned_cols=105 Identities=17% Similarity=0.099 Sum_probs=72.2
Q ss_pred HHHHHHHHHcCCCEEE----eCC---------CCCchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEEcCC
Q 021609 104 FVEAQILEAIGIDYVD----ESE---------VLTPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi----~~~---------~~~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
.+++++++++||-.|- .+. .++.++.++.+++ ...+|++.-+ ..+.|++.+.++|+|+|--
T Consensus 20 ~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~-~V~iPVig~~kigh~~Ea~~L~~~GvDiIDe--- 95 (287)
T TIGR00343 20 PEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMD-AVSIPVMAKVRIGHFVEAQILEALGVDYIDE--- 95 (287)
T ss_pred HHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHH-hCCCCEEEEeeccHHHHHHHHHHcCCCEEEc---
Confidence 4788888889988883 221 1344455555544 2567776653 4579999999999999941
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
|.. ..|..++...++...++|++ .|++|.+++.+....|||-
T Consensus 96 --Te~--------------------------------lrPade~~~~~K~~f~vpfm----ad~~~l~EAlrai~~Gadm 137 (287)
T TIGR00343 96 --SEV--------------------------------LTPADWTFHIDKKKFKVPFV----CGARDLGEALRRINEGAAM 137 (287)
T ss_pred --cCC--------------------------------CCcHHHHHHHHHHHcCCCEE----ccCCCHHHHHHHHHCCCCE
Confidence 110 12224455556655589998 6999999999999999997
Q ss_pred EE
Q 021609 249 VF 250 (310)
Q Consensus 249 V~ 250 (310)
|-
T Consensus 138 I~ 139 (287)
T TIGR00343 138 IR 139 (287)
T ss_pred Ee
Confidence 74
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.31 Score=45.29 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=66.1
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccCCCCCCCCHHHHHHHHhh----cCcceeeccccC------c---HHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQGGVARMSDPQLIKEIKQS----VTIPVMAKARIG------H---FVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~G~~~~~~~~~i~~i~~~----~~iPv~vk~~~~------~---~~~a~~~ 110 (310)
..++.++++|+.++ .++.+ |+......|.......+.+.+|+.. .+.++++.-|.. . .+.++.+
T Consensus 97 r~V~~~~~aGaagi-~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY 175 (292)
T PRK11320 97 RTVKSMIKAGAAAV-HIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAY 175 (292)
T ss_pred HHHHHHHHcCCeEE-EEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHH
Confidence 56899999999997 77533 2211111122223334566666533 245666654432 1 3557888
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecC----CH-HHHHHHHHhCCCEEEEc
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR----NL-GEALRRIREGAAMIRTK 166 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~----t~-~ea~~~~~~Gad~V~v~ 166 (310)
.++|||.|......+..++.+..+.. +.++.+... ++ -....+.++|+..|...
T Consensus 176 ~eAGAD~ifi~~~~~~~~i~~~~~~~--~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~ 234 (292)
T PRK11320 176 VEAGADMIFPEAMTELEMYRRFADAV--KVPILANITEFGATPLFTTEELASAGVAMVLYP 234 (292)
T ss_pred HHcCCCEEEecCCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEC
Confidence 99999999755444555665555432 333322111 10 13455678899988754
|
|
| >PRK14567 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.76 Score=41.84 Aligned_cols=37 Identities=22% Similarity=0.494 Sum_probs=31.1
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCC
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGD 260 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~d 260 (310)
+++++ -+|+| +++++.+++..+ .||++||++-+++++
T Consensus 202 ~v~Il--YGGSV-~~~N~~~l~~~~diDG~LVGgasL~~~~ 239 (253)
T PRK14567 202 NIKIV--YGGSL-KAENAKDILSLPDVDGGLIGGASLKAAE 239 (253)
T ss_pred cceEE--EcCcC-CHHHHHHHHcCCCCCEEEeehhhhcHHH
Confidence 57888 47888 899999999776 999999999996444
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.32 Score=43.03 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=59.8
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCE
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
++..+.+.+.++.+.+.|++.+ ..+........ ........+.++++++.+++|+++..++...++++.+.+.|+|+
T Consensus 122 vi~~v~t~ee~~~a~~~G~d~i-~~~~~g~t~~~--~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~Gadg 198 (221)
T PRK01130 122 LMADCSTLEEGLAAQKLGFDFI-GTTLSGYTEET--KKPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHA 198 (221)
T ss_pred EEEeCCCHHHHHHHHHcCCCEE-EcCCceeecCC--CCCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCE
Confidence 3456778888999999999976 33210000000 01112346889999988899999988876668888999999999
Q ss_pred EE-eCCCCCchhH
Q 021609 118 VD-ESEVLTPADE 129 (310)
Q Consensus 118 Vi-~~~~~~~~~~ 129 (310)
|. ++....+.+.
T Consensus 199 V~iGsai~~~~~~ 211 (221)
T PRK01130 199 VVVGGAITRPEEI 211 (221)
T ss_pred EEEchHhcCCHHH
Confidence 96 4444444443
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.97 Score=41.84 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCC-------HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSD-------PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~-------~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.+.||+.| +++..++.. |+..... ...++.+++.+++|+.+..+ ..+.++.+.++|||.|
T Consensus 42 ~~a~~~~~~GAdII-DIGgeSTrP----g~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~--~~~va~~AL~~GadiI 114 (282)
T PRK11613 42 KHANLMINAGATII-DVGGESTRP----GAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTS--KPEVIRESAKAGAHII 114 (282)
T ss_pred HHHHHHHHCCCcEE-EECCCCCCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECC--CHHHHHHHHHcCCCEE
Confidence 56888899999965 886322211 1111111 22444556556889887765 3477899999999988
Q ss_pred -EeCCCCCchhHHHHHHhcCCCCcE
Q 021609 119 -DESEVLTPADEENHINKHNFRIPF 142 (310)
Q Consensus 119 -i~~~~~~~~~~~~~i~~~~~~i~~ 142 (310)
.++. +...+..+.+++++..+.+
T Consensus 115 NDI~g-~~d~~~~~~~a~~~~~vVl 138 (282)
T PRK11613 115 NDIRS-LSEPGALEAAAETGLPVCL 138 (282)
T ss_pred EECCC-CCCHHHHHHHHHcCCCEEE
Confidence 2332 2333444445444333333
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.19 Score=47.43 Aligned_cols=79 Identities=24% Similarity=0.268 Sum_probs=53.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHH-cCCCEEE-eCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEA-IGIDYVD-ESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~-aGad~Vi-~~~~ 123 (310)
+.++.++++|+++| .+.+...... +.|. .+.+.++++++++++||+.+..+...++++.+.+ .|+|+|. +...
T Consensus 153 ~~a~~le~~G~d~i-~vh~rt~~~~-~~G~---a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~ 227 (321)
T PRK10415 153 EIAQLAEDCGIQAL-TIHGRTRACL-FNGE---AEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAA 227 (321)
T ss_pred HHHHHHHHhCCCEE-EEecCccccc-cCCC---cChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHh
Confidence 78889999999998 3321111111 1121 2468999999999999999888877788877776 7999995 3333
Q ss_pred CCchhH
Q 021609 124 LTPADE 129 (310)
Q Consensus 124 ~~~~~~ 129 (310)
+..+.+
T Consensus 228 l~nP~i 233 (321)
T PRK10415 228 QGRPWI 233 (321)
T ss_pred hcCChH
Confidence 433333
|
|
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.55 E-value=1.1 Score=42.06 Aligned_cols=111 Identities=13% Similarity=0.147 Sum_probs=74.7
Q ss_pred CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 137 ~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
..++.++.++.+...+..+...++...++.... ...+.+++.+
T Consensus 101 ~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E-------------------------------------~~~~plik~i 143 (347)
T COG2089 101 KRGIIFFSSPFDLTAVDLLESLNPPAYKIASGE-------------------------------------INDLPLIKYI 143 (347)
T ss_pred HcCeEEEecCCCHHHHHHHHhcCCCeEEecCcc-------------------------------------ccChHHHHHH
Confidence 357888888888888888888888888764211 2345678888
Q ss_pred hhcCCCCEEEeCCCCCCCHHHHHHHHH----cCCCE--EEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhccc
Q 021609 217 KQLGRLPVVHFAAGGVATPADAAMMMQ----LGCDG--VFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGE 290 (310)
Q Consensus 217 ~~~~~iPVi~iA~GGI~t~~d~~~~l~----~Gadg--V~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~ 290 (310)
++. +.|+| .+-|+.+.+++.+++. .|.-. ++=++..| +-|..-+ +-..+..|.+.|
T Consensus 144 A~~-~kPiI--lSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~Y--Pap~ed~-----------NL~~i~~l~~~F-- 205 (347)
T COG2089 144 AKK-GKPII--LSTGMATIEEIEEAVAILRENGNPDIALLHCTSAY--PAPFEDV-----------NLKAIPKLAEAF-- 205 (347)
T ss_pred Hhc-CCCEE--EEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCC--CCCHHHh-----------hHHHHHHHHHHh--
Confidence 774 45998 5889999999888773 57663 33344444 3454321 123345677777
Q ss_pred chhcccCccchhh
Q 021609 291 AMVGLNLSDHKVE 303 (310)
Q Consensus 291 ~~~~~~~~~~~~~ 303 (310)
...+|+|||.+-
T Consensus 206 -n~~vGlSDHT~g 217 (347)
T COG2089 206 -NAIVGLSDHTLG 217 (347)
T ss_pred -CCccccccCccc
Confidence 677888998765
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=94.54 E-value=3.4 Score=37.08 Aligned_cols=173 Identities=15% Similarity=0.127 Sum_probs=103.7
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~- 122 (310)
+.|..++++||++| +.|. +|.|. -..+++..+++.+..|+=+-... ..+..+.+.+.-.|.|. .++
T Consensus 25 ~aA~~a~~aGAdgITvHlR---eDrRH-------I~d~Dv~~L~~~~~~~lNlE~a~-t~em~~ia~~~kP~~vtLVPEk 93 (234)
T cd00003 25 EAALLAEKAGADGITVHLR---EDRRH-------IQDRDVRLLRELVRTELNLEMAP-TEEMLEIALEVKPHQVTLVPEK 93 (234)
T ss_pred HHHHHHHHcCCCEEEecCC---CCcCc-------CCHHHHHHHHHHcCCCEEeccCC-CHHHHHHHHHCCCCEEEECCCC
Confidence 67888999999999 6773 12222 12578888888777666544332 34778899999999984 332
Q ss_pred --------CCC----c---hhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 123 --------VLT----P---ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 123 --------~~~----~---~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
++. . .+..+.++..+..+..+++. +.+....+.+.|+|.|-+|...|....
T Consensus 94 r~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP-d~~qi~~A~~~GAd~VELhTG~Ya~a~------------- 159 (234)
T cd00003 94 REELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDP-DPEQIEAAKEVGADRVELHTGPYANAY------------- 159 (234)
T ss_pred CCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHhCcCEEEEechhhhcCC-------------
Confidence 111 1 23344444444555666664 567788888999999988743331110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFK 257 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~ 257 (310)
+.... .+... .+...........+-|= |+-|+ +.+++..+.. -+..-+-+|-+|+.
T Consensus 160 -------~~~~~---~~el~-~i~~aa~~a~~~GL~Vn--AGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia 216 (234)
T cd00003 160 -------DKAER---EAELE-RIAKAAKLARELGLGVN--AGHGL-NYENVKPIAKIPGIAELNIGHAIIS 216 (234)
T ss_pred -------CchhH---HHHHH-HHHHHHHHHHHcCCEEe--cCCCC-CHHHHHHHHhCCCCeEEccCHHHHH
Confidence 00000 00000 01111111122345565 88898 7999988775 47889999988884
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.58 Score=42.44 Aligned_cols=42 Identities=21% Similarity=0.424 Sum_probs=32.6
Q ss_pred HHhhcCCCCEEEeCCCCCCC---HHHHHHHHHcCCCEEEEcccccc
Q 021609 215 QTKQLGRLPVVHFAAGGVAT---PADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 215 ~i~~~~~iPVi~iA~GGI~t---~~d~~~~l~~GadgV~VGsai~~ 257 (310)
......++|.++ .|.|++. ++.+.-++++||+||++|++...
T Consensus 224 ~~~~~~~lP~i~-LSAGV~~klF~~tv~fA~eaGAsGvL~GRAtWa 268 (306)
T COG3684 224 RQNDHINLPWIY-LSAGVSAKLFQRTVRFAMEAGASGVLAGRATWA 268 (306)
T ss_pred HhhcCCCCCeEE-EecCccHHHhHHHHHHHHHcCCceeEechhhhh
Confidence 334456899987 5999953 25666777899999999999986
|
|
| >KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.61 Score=40.50 Aligned_cols=70 Identities=24% Similarity=0.355 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--Cc-----------HHHHHH
Q 021609 43 VTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--GH-----------FVEAQI 109 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~-----------~~~a~~ 109 (310)
.+.+-|..++++||+.| +|+.. ... ||- .++.-.++-++..+.+|+-+..+. ++ .++++.
T Consensus 17 Ds~eSA~nAe~GGAdRi-ElCSa---L~e-GGl--TPSvG~l~~~k~~~~iP~ycMiRpR~GDFvYsd~Em~a~~~Dv~l 89 (255)
T KOG4013|consen 17 DSLESAENAEAGGADRI-ELCSA---LQE-GGL--TPSVGFLSILKYKYPIPLYCMIRPRAGDFVYSDDEMAANMEDVEL 89 (255)
T ss_pred hhHHHHHhHhhcCccHh-HHhhh---hcc-CCC--CCcchhhhhhhcccccceEEEEecCCCCcccchHHHHHHHHHHHH
Confidence 34578899999999997 66521 111 222 334557777888899999887554 21 256777
Q ss_pred HHHcCCCEEE
Q 021609 110 LEAIGIDYVD 119 (310)
Q Consensus 110 ~~~aGad~Vi 119 (310)
+.++|||+++
T Consensus 90 lk~~GAdGfV 99 (255)
T KOG4013|consen 90 LKKAGADGFV 99 (255)
T ss_pred HHHcCCCceE
Confidence 8889999986
|
|
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=94.33 E-value=3.8 Score=36.83 Aligned_cols=173 Identities=17% Similarity=0.182 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~- 122 (310)
+.|..++++||++| +.|. +|.|. -..+++..+++.+..|+=+-... ..+..+.+.+.-.|.|. .++
T Consensus 25 ~aA~~a~~aGAdgITvHlR---eDrRH-------I~d~Dv~~l~~~~~~~lNlE~a~-~~emi~ia~~vkP~~vtLVPEk 93 (237)
T TIGR00559 25 RAALIAEQAGADGITVHLR---EDRRH-------IQDRDVYDLKEALTTPFNIEMAP-TEEMIRIAEEIKPEQVTLVPEA 93 (237)
T ss_pred HHHHHHHHcCCCEEEecCC---CCcCc-------CCHHHHHHHHHHcCCCEEeccCC-CHHHHHHHHHcCCCEEEECCCC
Confidence 67888899999999 6773 12222 12578888888877766554432 34778889999999984 332
Q ss_pred --------CCC-------chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 123 --------VLT-------PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 123 --------~~~-------~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
++. ..+.++.++..+..+..+++. +.+....+.+.|+|.|-+|...|....
T Consensus 94 r~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP-~~~qi~~A~~~GAd~VELhTG~YA~a~------------- 159 (237)
T TIGR00559 94 RDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA-DKDQISAAAEVGADRIEIHTGPYANAY------------- 159 (237)
T ss_pred CCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHhCcCEEEEechhhhcCC-------------
Confidence 111 223344444445556667765 567788888999999988743331110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-C-CCEEEEcccccc
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-G-CDGVFVGSGVFK 257 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-G-adgV~VGsai~~ 257 (310)
+.... ..... .+...........+-|- |+-|+ +..++..+... + ..-+-+|-+|+.
T Consensus 160 -------~~~~~---~~el~-~i~~aa~~A~~lGL~Vn--AGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia 217 (237)
T TIGR00559 160 -------NKKEM---AEELQ-RIVKASVHAHSLGLKVN--AGHGL-NYHNVKYFAEILPYLDELNIGHAIIA 217 (237)
T ss_pred -------CchhH---HHHHH-HHHHHHHHHHHcCCEEe--cCCCC-CHHhHHHHHhCCCCceEEecCHHHHH
Confidence 00000 00000 01111111122355665 88898 79999888754 4 789999988884
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=94.31 E-value=4.6 Score=38.75 Aligned_cols=173 Identities=14% Similarity=0.175 Sum_probs=99.7
Q ss_pred HHHHHHHHcCCcEEE-ec--cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeC
Q 021609 46 EQARVAEEAGACAVM-AL--ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~-~L--~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~ 121 (310)
+.|+.+.+.|+..+- .. ++.. ...|-|.. ...+..+.+.++.+++|++.-.. +...++.+.+. +|.+ +.+
T Consensus 136 ~~A~~lk~~g~~~~r~~~~kpRts--p~~f~g~~-~e~l~~L~~~~~~~Gl~~~t~v~--d~~~~~~l~~~-vd~lkI~s 209 (360)
T PRK12595 136 AVAKALKAKGLKLLRGGAFKPRTS--PYDFQGLG-VEGLKILKQVADEYGLAVISEIV--NPADVEVALDY-VDVIQIGA 209 (360)
T ss_pred HHHHHHHHcCCcEEEccccCCCCC--CccccCCC-HHHHHHHHHHHHHcCCCEEEeeC--CHHHHHHHHHh-CCeEEECc
Confidence 467778788877551 11 1110 01112221 12345666777888999986443 34667788888 9988 566
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe--c-CCHHHHHHHHH----hCC-CEEEEc-CCCCCcchHHHHHHHHhhccceEeec
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG--C-RNLGEALRRIR----EGA-AMIRTK-GEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~--~-~t~~ea~~~~~----~Ga-d~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
..+...++.+.+.+ .+.+++++ . .|.+|...+.+ .|. +++.++ |.. .++
T Consensus 210 ~~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s--------------------~yp 267 (360)
T PRK12595 210 RNMQNFELLKAAGR--VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIR--------------------TYE 267 (360)
T ss_pred ccccCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccC--------------------CCC
Confidence 66667777776654 46676665 3 47888777654 466 455554 321 111
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCC--CCCCC--HHHHHHHHHcCCCEEEEcccc
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~--GGI~t--~~d~~~~l~~GadgV~VGsai 255 (310)
+..+ ...++..+..+++..++||++-.+ +|-+. +.-...+..+||||+++=+=+
T Consensus 268 ~~~~---------~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~ 325 (360)
T PRK12595 268 KATR---------NTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP 325 (360)
T ss_pred CCCC---------CCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence 1111 123566777777767899984111 23111 123445678999999987655
|
|
| >PRK12653 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.26 E-value=3.8 Score=36.54 Aligned_cols=173 Identities=14% Similarity=0.124 Sum_probs=97.8
Q ss_pred cccCCCHHHHHHHHHcC-CcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC--cceeeccccC----cHHHHHHHH
Q 021609 39 IMDVVTPEQARVAEEAG-ACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT--IPVMAKARIG----HFVEAQILE 111 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~G-a~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~--iPv~vk~~~~----~~~~a~~~~ 111 (310)
+.|-.|.+..+.+.+.| .+++ --||. ..+..+ . ...+.++++++..+ -|+.+..... ..++++.+.
T Consensus 4 flDtA~~~~i~~~~~~~~i~Gv-TTNPs--ll~k~g-~---~~~~~~~~i~~~~~~~~~v~~Qv~~~d~e~mi~ea~~l~ 76 (220)
T PRK12653 4 YLDTSDVVAVKALSRIFPLAGV-TTNPS--IIAAGK-K---PLEVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDARKLR 76 (220)
T ss_pred EEecCCHHHHHHHHhCCCccEE-eCCHH--HHHhcC-C---CHHHHHHHHHHHhCCCCcEEEEEecCCHHHHHHHHHHHH
Confidence 34556677777777766 3554 44432 222222 1 23467777776653 3566543322 235566777
Q ss_pred HcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccce
Q 021609 112 AIGIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 112 ~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
+.+-+.++ ++...+=....+.+++. ++.+.+ .+-+.+.+..+..+|++||... |+.
T Consensus 77 ~~~~ni~IKIP~T~~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~------------------- 135 (220)
T PRK12653 77 SIIADIVVKVPVTAEGLAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRI------------------- 135 (220)
T ss_pred HhCCCEEEEeCCCHHHHHHHHHHHHc--CCCeeEEEecCHHHHHHHHhcCCcEEEeecChH-------------------
Confidence 77766555 44332223344445443 444433 4789999999999999999864 221
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhh---c--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ---L--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~---~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
.... ..+...++++.+ . .+.-++ ...+++++++.+++.+|+|.+-+.-.++
T Consensus 136 ---~~~g-----------~dg~~~i~~i~~~~~~~~~~tkIL---aAS~r~~~~v~~~~~~G~d~vTip~~vl 191 (220)
T PRK12653 136 ---DAQG-----------GSGIQTVTDLQQLLKMHAPQAKVL---AASFKTPRQALDCLLAGCESITLPLDVA 191 (220)
T ss_pred ---hhcC-----------CChHHHHHHHHHHHHhcCCCcEEE---EEecCCHHHHHHHHHcCCCEEECCHHHH
Confidence 0001 112222222222 1 234454 4678899999999999999998775444
|
|
| >PRK12655 fructose-6-phosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.8 Score=36.54 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=98.1
Q ss_pred cccCCCHHHHHHHHHcC-CcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccC----cHHHHHHHH
Q 021609 39 IMDVVTPEQARVAEEAG-ACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIG----HFVEAQILE 111 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~G-a~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~----~~~~a~~~~ 111 (310)
+.|-.+.+..+.+.+.| .+++ --||. ..+..+ . ...+.++++++.. .-|+.+..... ..++++.+.
T Consensus 4 flDtA~~~~i~~~~~~~~i~Gv-TTNPs--ll~k~g-~---~~~~~~~~i~~~~~~~~~v~~qv~~~d~e~mi~eA~~l~ 76 (220)
T PRK12655 4 YLDTANVAEVERLARIFPIAGV-TTNPS--IIAASK-E---SIWEVLPRLQKAIGGEGILFAQTMSRDAQGMVEEAKRLR 76 (220)
T ss_pred EEecCCHHHHHHHHhCCCccEE-eCCHH--HHHhcC-C---CHHHHHHHHHHHhCCCCCEEEEEeeCCHHHHHHHHHHHH
Confidence 34556677777777766 3554 44432 222222 1 2356777777764 34566543322 235666777
Q ss_pred HcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccce
Q 021609 112 AIGIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 112 ~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
+.+-+.++ ++...+=....+.+++. |+.+.+ .+.|.+.+..+..+|++||... |+..
T Consensus 77 ~~~~nv~IKIP~T~~Gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~------------------ 136 (220)
T PRK12655 77 NAIPGIVVKIPVTAEGLAAIKKLKKE--GIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVD------------------ 136 (220)
T ss_pred HhCCCEEEEeCCCHHHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCeEEEeecchHh------------------
Confidence 77656555 44332222334444443 544433 3789999999999999999864 2210
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHh----hc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTK----QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~----~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
..+ ..+...++++. .. .+.-|+ ...++++.++.+++.+|||.+-+.-.+++
T Consensus 137 ----~~g-----------~dg~~~i~~~~~~~~~~~~~tkIL---aAS~r~~~~v~~~~~~G~d~vTip~~vl~ 192 (220)
T PRK12655 137 ----AQG-----------GDGIRMVQELQTLLEMHAPESMVL---AASFKTPRQALDCLLAGCQSITLPLDVAQ 192 (220)
T ss_pred ----HcC-----------CCHHHHHHHHHHHHHhcCCCcEEE---EEecCCHHHHHHHHHcCCCEEECCHHHHH
Confidence 001 11223333332 21 234454 46788999999999999999987754443
|
|
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.37 Score=42.91 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=51.3
Q ss_pred HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE-eCCCC
Q 021609 47 QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVL 124 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~ 124 (310)
.|.+.+..| ..+++|+ +.|. ..+++.++++++.+ ++|+++...+...++++.+.++|||.|+ ++...
T Consensus 140 yA~aae~~g-~~ivyLe--------~SG~--~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~ 208 (219)
T cd02812 140 YALAAEYLG-MPIVYLE--------YSGA--YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVE 208 (219)
T ss_pred HHHHHHHcC-CeEEEeC--------CCCC--cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 355556677 4456772 2223 35689999999998 9999999888888999999999999996 45444
Q ss_pred Cc
Q 021609 125 TP 126 (310)
Q Consensus 125 ~~ 126 (310)
+.
T Consensus 209 ~~ 210 (219)
T cd02812 209 ED 210 (219)
T ss_pred CC
Confidence 43
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.43 Score=44.59 Aligned_cols=31 Identities=29% Similarity=0.549 Sum_probs=28.5
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+++||| +++++.++.++|+|.+.||+.++.+
T Consensus 249 eaSGgI-~~~~i~~~a~~gvD~isvGs~~~~~ 279 (302)
T cd01571 249 FVSGGL-DEEDIKELEDVGVDAFGVGTAISKA 279 (302)
T ss_pred EEeCCC-CHHHHHHHHHcCCCEEECCcccCCC
Confidence 389999 7999999999999999999999874
|
Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.5 Score=43.82 Aligned_cols=119 Identities=18% Similarity=0.164 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCcEEEeccCCccccccc--CCCCCCCCHHHHHHHHhh----cCcceeeccccC------c---HHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQ--GGVARMSDPQLIKEIKQS----VTIPVMAKARIG------H---FVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~--~G~~~~~~~~~i~~i~~~----~~iPv~vk~~~~------~---~~~a~~~ 110 (310)
..++.++++|+.++ .++.+....+.. .|.......+.+.+|+.. .+.++++.-|.. . .+.++.+
T Consensus 92 ~tv~~~~~aG~agi-~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay 170 (285)
T TIGR02317 92 RTVREMEDAGAAAV-HIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAY 170 (285)
T ss_pred HHHHHHHHcCCeEE-EEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHH
Confidence 56899999999997 775331111211 122222333556666432 245566654432 1 3556888
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecC----CH-HHHHHHHHhCCCEEEEcC
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR----NL-GEALRRIREGAAMIRTKG 167 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~----t~-~ea~~~~~~Gad~V~v~g 167 (310)
.++|||.|......+..++.+..++. ..++.+.+. ++ -....+.++|+..|...+
T Consensus 171 ~~AGAD~vfi~g~~~~e~i~~~~~~i--~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~ 230 (285)
T TIGR02317 171 VEAGADMIFPEALTSLEEFRQFAKAV--KVPLLANMTEFGKTPLFTADELREAGYKMVIYPV 230 (285)
T ss_pred HHcCCCEEEeCCCCCHHHHHHHHHhc--CCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEch
Confidence 99999999755444556665555442 233322111 11 135556788999887643
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=94.16 E-value=2.2 Score=38.37 Aligned_cols=166 Identities=19% Similarity=0.176 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
+.+..+.+.|++.| ++- +.+. +.. ..+....+.++.+++.. +.++.+-.+.+ .+.++.+.++|++.|.....
T Consensus 23 ~i~~~L~~~GV~~I-Evg~~~~~--~~~--p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-~~~i~~a~~~g~~~i~i~~~ 96 (265)
T cd03174 23 EIAEALDEAGVDSI-EVGSGASP--KAV--PQMEDDWEVLRAIRKLVPNVKLQALVRNR-EKGIERALEAGVDEVRIFDS 96 (265)
T ss_pred HHHHHHHHcCCCEE-EeccCcCc--ccc--ccCCCHHHHHHHHHhccCCcEEEEEccCc-hhhHHHHHhCCcCEEEEEEe
Confidence 56788889999976 542 1111 000 00122356778887765 56665544422 57789999999999953222
Q ss_pred CC---------------ch---hHHHHHHhcCCCCcEEE-ecCC--------HHHHHHHHHhCCCEEEEcCCCCCcchHH
Q 021609 124 LT---------------PA---DEENHINKHNFRIPFVC-GCRN--------LGEALRRIREGAAMIRTKGEAGTGNIIE 176 (310)
Q Consensus 124 ~~---------------~~---~~~~~i~~~~~~i~~~v-~~~t--------~~ea~~~~~~Gad~V~v~g~~~~~~~~~ 176 (310)
.+ .. +..+.+++.+..+.+.+ ++.. .+-++++.++|++.|.+.-..+..
T Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~---- 172 (265)
T cd03174 97 ASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLA---- 172 (265)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCc----
Confidence 11 12 22334444444433333 2333 233455667888888764322111
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC-CCEEEe--CCCCCCCHHHHHHHHHcCCCEEE
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR-LPVVHF--AAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~-iPVi~i--A~GGI~t~~d~~~~l~~GadgV~ 250 (310)
+|+++ .+++..+++..+ +|+-+= -.=|.. ..+...++.+||+.|=
T Consensus 173 ------------------~P~~v----------~~li~~l~~~~~~~~~~~H~Hn~~gla-~an~laA~~aG~~~id 220 (265)
T cd03174 173 ------------------TPEEV----------AELVKALREALPDVPLGLHTHNTLGLA-VANSLAALEAGADRVD 220 (265)
T ss_pred ------------------CHHHH----------HHHHHHHHHhCCCCeEEEEeCCCCChH-HHHHHHHHHcCCCEEE
Confidence 11111 334555555433 555310 122553 6777788899988764
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.91 Score=41.78 Aligned_cols=109 Identities=17% Similarity=0.122 Sum_probs=72.4
Q ss_pred cHHHHHHHHHcCCCEEE----eCCC---------CCchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEEcC
Q 021609 103 HFVEAQILEAIGIDYVD----ESEV---------LTPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 103 ~~~~a~~~~~aGad~Vi----~~~~---------~~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v~g 167 (310)
..+++++++++||=.|. .+.+ .+..+.++.+++ ..++|++.=+ ....|++.+.++|+|+|.-
T Consensus 17 ~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~-~V~iPVIGi~K~~~~~Ea~~L~eaGvDiIDa-- 93 (283)
T cd04727 17 NAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMD-AVSIPVMAKVRIGHFVEAQILEALGVDMIDE-- 93 (283)
T ss_pred CHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHH-hCCCCeEEeeehhHHHHHHHHHHcCCCEEec--
Confidence 34778888888888873 2211 233444555544 2467766543 3478999999999999941
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCC
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gad 247 (310)
|.. ..+..+++..++...++|++ .+++|.+++..+.++|||
T Consensus 94 ---T~r--------------------------------~rP~~~~~~~iK~~~~~l~M----AD~stleEal~a~~~Gad 134 (283)
T cd04727 94 ---SEV--------------------------------LTPADEEHHIDKHKFKVPFV----CGARNLGEALRRISEGAA 134 (283)
T ss_pred ---cCC--------------------------------CCcHHHHHHHHHHHcCCcEE----ccCCCHHHHHHHHHCCCC
Confidence 110 12224456666664588998 699999999999999999
Q ss_pred EEEEcccc
Q 021609 248 GVFVGSGV 255 (310)
Q Consensus 248 gV~VGsai 255 (310)
-| |+-+
T Consensus 135 ~I--~TTl 140 (283)
T cd04727 135 MI--RTKG 140 (283)
T ss_pred EE--EecC
Confidence 76 5544
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=4.2 Score=36.56 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=103.9
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~- 122 (310)
+.|..++++||++| +.|. +|.|. -..+++..+++.+..|+=+-... ..+..+.+.+.-.|.|. .++
T Consensus 28 ~aA~~a~~aGAdgITvHlR---eDrRH-------I~d~Dv~~L~~~~~~~lNlE~a~-~~em~~ia~~~kP~~vtLVPE~ 96 (239)
T PRK05265 28 RAALIAEQAGADGITVHLR---EDRRH-------IRDRDVRLLRETLKTELNLEMAA-TEEMLDIALEVKPHQVTLVPEK 96 (239)
T ss_pred HHHHHHHHcCCCEEEecCC---CCccc-------CCHHHHHHHHHhcCCCEEeccCC-CHHHHHHHHHCCCCEEEECCCC
Confidence 67888899999999 6773 12222 12578888888777766544332 34678889999999984 332
Q ss_pred --------CCC-------chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 123 --------VLT-------PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 123 --------~~~-------~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
++. ..+.++.++..+..+..+++ .+.+....+.+.|+|.|-+|...|...
T Consensus 97 r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~GAd~VELhTG~yA~a-------------- 161 (239)
T PRK05265 97 REELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEVGADRIELHTGPYADA-------------- 161 (239)
T ss_pred CCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCEEEEechhhhcC--------------
Confidence 111 22334444444555666776 477788888899999998874322110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFK 257 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~ 257 (310)
+..... +... .+...........+-|- |+-|+ +.+++..+.. -+..-+-+|-+|+.
T Consensus 162 ---~~~~~~-------~el~-~~~~aa~~a~~lGL~Vn--AGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia 218 (239)
T PRK05265 162 ---KTEAEA-------AELE-RIAKAAKLAASLGLGVN--AGHGL-NYHNVKPIAAIPGIEELNIGHAIIA 218 (239)
T ss_pred ---CCcchH-------HHHH-HHHHHHHHHHHcCCEEe--cCCCC-CHHhHHHHhhCCCCeEEccCHHHHH
Confidence 000000 0000 01111111112355565 88898 7999988765 47889999988884
|
|
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.10 E-value=5.5 Score=37.97 Aligned_cols=188 Identities=13% Similarity=0.085 Sum_probs=103.2
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC-cHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG-HFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~-~~~~a~~~~~aG 114 (310)
++.+.+. .+++++.+..-|+++.+. ..+. .|.. .....++.+.+.. .+||.+.+--+ .++.+..+.++|
T Consensus 24 N~~n~e~~~avi~AAEe~~sPvIlq~s~~--~~~~-~g~~--~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~G 98 (347)
T PRK13399 24 NVNNMEQILAIMEAAEATDSPVILQASRG--ARKY-AGDA--MLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSG 98 (347)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEECCcc--hhhh-CCHH--HHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcC
Confidence 4455654 445567777766666321 1111 1110 0123445555566 59999875433 568889999999
Q ss_pred CCEEE--eCCCC------Cch-------hHHHHHHhcCCCCc--E--E-----------------------EecCCHHHH
Q 021609 115 IDYVD--ESEVL------TPA-------DEENHINKHNFRIP--F--V-----------------------CGCRNLGEA 152 (310)
Q Consensus 115 ad~Vi--~~~~~------~~~-------~~~~~i~~~~~~i~--~--~-----------------------v~~~t~~ea 152 (310)
.+-|- .+... +.+ ++.++....+..+. + + ..-+++++|
T Consensus 99 FtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA 178 (347)
T PRK13399 99 FTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQA 178 (347)
T ss_pred CCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHH
Confidence 99993 44321 122 23333322221000 0 0 013467777
Q ss_pred HHHH-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeeccc-ChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCC
Q 021609 153 LRRI-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM-DDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAA 229 (310)
Q Consensus 153 ~~~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~-~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~ 229 (310)
.+-. +.|+|.+.+.-.+ -| ..++.. .++ ...-.++.++++++.+ ++|+++=.+
T Consensus 179 ~~Fv~~TgvD~LAvaiGt--~H---------------G~Yk~~~~p~-------~~~L~~drl~eI~~~v~~vPLVLHGg 234 (347)
T PRK13399 179 VDFVQRTGVDALAIAIGT--SH---------------GAYKFTRKPD-------GDILAIDRIEEIHARLPNTHLVMHGS 234 (347)
T ss_pred HHHHHHHCcCEEhhhhcc--cc---------------CCcCCCCCCC-------hhhccHHHHHHHHhhcCCCCEEEeCC
Confidence 7755 4588877643211 01 011100 000 0113478899998887 699885434
Q ss_pred CCCC--------------------CHHHHHHHHHcCCCEEEEcccccc
Q 021609 230 GGVA--------------------TPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 230 GGI~--------------------t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.|+. ..+++.++++.|..=|=++|.+-.
T Consensus 235 SGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~ 282 (347)
T PRK13399 235 SSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRL 282 (347)
T ss_pred CCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence 4432 148899999999999999998864
|
|
| >PTZ00333 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.5 Score=40.05 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEcccccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~ 257 (310)
++||+ -+|+| +++++.+++ ..+.||++||++-++
T Consensus 207 ~~~IL--YGGSV-~~~N~~~l~~~~~vDG~LvG~asl~ 241 (255)
T PTZ00333 207 ATRII--YGGSV-NEKNCKELIKQPDIDGFLVGGASLK 241 (255)
T ss_pred cceEE--EcCCC-CHHHHHHHhcCCCCCEEEEehHhhh
Confidence 57888 47888 688888877 679999999999996
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.45 Score=43.87 Aligned_cols=120 Identities=17% Similarity=0.123 Sum_probs=69.1
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccCCCCCCCCHHHHHHHHhhc----CcceeeccccC---------cHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQGGVARMSDPQLIKEIKQSV----TIPVMAKARIG---------HFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~G~~~~~~~~~i~~i~~~~----~iPv~vk~~~~---------~~~~a~~~ 110 (310)
+.++.++++|+.++ +++.+ |+......|.......+.+.+|+... +-++++.-|.. -.+.++.+
T Consensus 97 rtV~~~~~aG~agi-~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY 175 (289)
T COG2513 97 RTVRELEQAGAAGI-HIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHHcCccee-eeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHH
Confidence 56888999999997 77633 22212112333344456777776442 44555543321 14678999
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcC-CCCcEEEe-cCC-HHHHHHHHHhCCCEEEEc
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHN-FRIPFVCG-CRN-LGEALRRIREGAAMIRTK 166 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~-~~i~~~v~-~~t-~~ea~~~~~~Gad~V~v~ 166 (310)
.++|||.|......++.++..+.+... +-..++.. -+| .-.+..+.++|++.|...
T Consensus 176 ~eAGAD~if~~al~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~ 234 (289)
T COG2513 176 VEAGADAIFPEALTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVKRVSYG 234 (289)
T ss_pred HHcCCcEEccccCCCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcCceEEEEC
Confidence 999999997555445666666665532 11222222 121 123456778899988753
|
|
| >COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.92 E-value=2.5 Score=38.60 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=92.8
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeC
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~ 121 (310)
+.|+...++||+.+ -.. |-.. .-.|.|.. ..-+..++++++.+++|++.-.. +..+++...+. +|.+ +++
T Consensus 63 ~~A~~vk~~Ga~~l-RGgafKPRTS-PYsFQGlg-e~gL~~l~~a~~~~Gl~vvtEvm--~~~~~e~~~~y-~DilqvGA 136 (286)
T COG2876 63 ETAESVKAAGAKAL-RGGAFKPRTS-PYSFQGLG-EEGLKLLKRAADETGLPVVTEVM--DVRDVEAAAEY-ADILQVGA 136 (286)
T ss_pred HHHHHHHHcchhhc-cCCcCCCCCC-cccccccC-HHHHHHHHHHHHHcCCeeEEEec--CHHHHHHHHhh-hhHHHhcc
Confidence 45778889999976 221 1100 01111211 12256777788889999986433 22344444444 5555 344
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEe---cCCHHHHHHHHHh----CCCEEEEcCCCCCcchHHHHHHHHhhccceEeeccc
Q 021609 122 EVLTPADEENHINKHNFRIPFVCG---CRNLGEALRRIRE----GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~---~~t~~ea~~~~~~----Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
.-+..-++.+.+.+ .+.+++.. .+|.+|-..++++ |..-|.+--++ +|-+...
T Consensus 137 RNMQNF~LLke~G~--~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERG------------------IRtfe~~ 196 (286)
T COG2876 137 RNMQNFALLKEVGR--QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERG------------------IRTFEKA 196 (286)
T ss_pred cchhhhHHHHHhcc--cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEecc------------------ccccccc
Confidence 44444444444332 34555553 5678887766553 44333221111 1111111
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHH-----HHHHHHcCCCEEEEccccccCCCHH
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD-----AAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d-----~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
++ ..-+...+..+++.+++||++-.+.+-. -.+ +..++.+||||+++= =++||.
T Consensus 197 TR---------ntLDi~aV~~~kq~THLPVivDpSH~~G-rr~lv~pla~AA~AaGAdglmiE----VHp~P~ 255 (286)
T COG2876 197 TR---------NTLDISAVPILKQETHLPVIVDPSHATG-RRDLVEPLAKAAIAAGADGLMIE----VHPDPE 255 (286)
T ss_pred cc---------ceechHHHHHHHhhcCCCEEECCCCccc-chhhHHHHHHHHHhccCCeeEEE----ecCCcc
Confidence 11 1234566777888899999975444432 333 334457899999863 245664
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=5.1 Score=36.74 Aligned_cols=174 Identities=16% Similarity=0.159 Sum_probs=100.5
Q ss_pred HHHHHHHHcCCcEEE-ec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCC
Q 021609 46 EQARVAEEAGACAVM-AL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~-~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~ 122 (310)
+.|+.+.+.|+..+. .. .|-.. ...+.|.. ..-++.++++++..++|+..-.. +...++.+.+. +|.+ +.+.
T Consensus 45 ~~A~~lk~~g~~~~r~~~~kpRTs-~~s~~G~g-~~gl~~l~~~~~~~Gl~~~te~~--d~~~~~~l~~~-vd~~kIga~ 119 (266)
T PRK13398 45 KVAEKLKELGVHMLRGGAFKPRTS-PYSFQGLG-EEGLKILKEVGDKYNLPVVTEVM--DTRDVEEVADY-ADMLQIGSR 119 (266)
T ss_pred HHHHHHHHcCCCEEEEeeecCCCC-CCccCCcH-HHHHHHHHHHHHHcCCCEEEeeC--ChhhHHHHHHh-CCEEEECcc
Confidence 578888999998661 11 11110 00111110 12245677777788999986443 23556667677 8888 4666
Q ss_pred CCCchhHHHHHHhcCCCCcEEEec--C-CHHHHHHHHH----hCC-CEEEEcC-C-CCCcchHHHHHHHHhhccceEeec
Q 021609 123 VLTPADEENHINKHNFRIPFVCGC--R-NLGEALRRIR----EGA-AMIRTKG-E-AGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~--~-t~~ea~~~~~----~Ga-d~V~v~g-~-~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
.+...++.+.+.+ .+.++++.- . +.+|...+.+ .|. +++.++- . +++++ +
T Consensus 120 ~~~n~~LL~~~a~--~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y------------------~ 179 (266)
T PRK13398 120 NMQNFELLKEVGK--TKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETY------------------T 179 (266)
T ss_pred cccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCC------------------C
Confidence 6677777777643 567777763 2 7788776653 355 3333331 1 11110 0
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCC----HHHHHHHHHcCCCEEEEccccc
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVAT----PADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t----~~d~~~~l~~GadgV~VGsai~ 256 (310)
+ ...++..+..+++...+||++.++=+++. +.....+..+||||+++=+-+.
T Consensus 180 ---~---------~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 180 ---R---------NTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred ---H---------HHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 0 11234456666666689998533444432 5667777889999999876555
|
|
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.45 Score=42.07 Aligned_cols=80 Identities=26% Similarity=0.291 Sum_probs=56.2
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCC-cccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCE
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERV-PADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~-~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
+..+.+++.+..+.+.|++.+ ..++. .+.... .......+.++++++.+++|+++...+...++++.+.+.|+|+
T Consensus 127 iv~v~t~~ea~~a~~~G~d~i-~~~~~g~t~~~~---~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~Gadg 202 (219)
T cd04729 127 MADISTLEEALNAAKLGFDII-GTTLSGYTEETA---KTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADA 202 (219)
T ss_pred EEECCCHHHHHHHHHcCCCEE-EccCcccccccc---CCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCE
Confidence 456778888899999999976 33210 000000 0112346889999988899999988876678899999999999
Q ss_pred EE-eCC
Q 021609 118 VD-ESE 122 (310)
Q Consensus 118 Vi-~~~ 122 (310)
|. ++.
T Consensus 203 V~vGsa 208 (219)
T cd04729 203 VVVGSA 208 (219)
T ss_pred EEEchH
Confidence 96 443
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.2 Score=39.70 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=61.2
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHH---hhcCcceeecccc----------C-cHHH-HHH
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIK---QSVTIPVMAKARI----------G-HFVE-AQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~---~~~~iPv~vk~~~----------~-~~~~-a~~ 109 (310)
..++.+.+.||+++ ++++ .+. .......+.+++++ +.+++|+++.... . .... ++.
T Consensus 80 ~~v~~a~~~Ga~~v~~~~~-------~~~-~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~ 151 (235)
T cd00958 80 ASVEDAVRLGADAVGVTVY-------VGS-EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARI 151 (235)
T ss_pred cCHHHHHHCCCCEEEEEEe-------cCC-chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHH
Confidence 34778889999987 4553 110 00001123444443 4579999986543 1 1122 456
Q ss_pred HHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEE-e---cCCHHH----HHHHHHhCCCEEEEc
Q 021609 110 LEAIGIDYVDESEVLTPADEENHINKHNFRIPFVC-G---CRNLGE----ALRRIREGAAMIRTK 166 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v-~---~~t~~e----a~~~~~~Gad~V~v~ 166 (310)
+.++|+|+|-.........+.+..+. ..+++.+ + ..|.++ +..+.+.|++.+.+.
T Consensus 152 a~~~GaD~Ik~~~~~~~~~~~~i~~~--~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 152 GAELGADIVKTKYTGDAESFKEVVEG--CPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred HHHHCCCEEEecCCCCHHHHHHHHhc--CCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 88899999943322223344444332 3344444 2 245544 677788999988764
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.47 Score=43.00 Aligned_cols=77 Identities=22% Similarity=0.366 Sum_probs=52.0
Q ss_pred EecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCC
Q 021609 144 CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLP 223 (310)
Q Consensus 144 v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iP 223 (310)
+.+.+++++..+.+.|+|-|-+-.....| +.+|+..+++.+++..++|
T Consensus 6 vcv~s~~~a~~A~~~GAdRiELc~~L~~G--------------------------------GlTPS~g~i~~~~~~~~ip 53 (248)
T PRK11572 6 ICCYSMECALTAQQAGADRIELCAAPKEG--------------------------------GLTPSLGVLKSVRERVTIP 53 (248)
T ss_pred EEECCHHHHHHHHHcCCCEEEEccCcCCC--------------------------------CcCCCHHHHHHHHHhcCCC
Confidence 45678999999999999988654321111 2356677888888777888
Q ss_pred EEEe--CCCC-C-CCH-------HHHHHHHHcCCCEEEEc
Q 021609 224 VVHF--AAGG-V-ATP-------ADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 224 Vi~i--A~GG-I-~t~-------~d~~~~l~~GadgV~VG 252 (310)
|.+. .-|| . .|. +|+..+.++|+|||++|
T Consensus 54 v~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G 93 (248)
T PRK11572 54 VHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTG 93 (248)
T ss_pred eEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 7653 2222 2 222 45666677899999998
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.73 Score=40.45 Aligned_cols=93 Identities=22% Similarity=0.185 Sum_probs=65.7
Q ss_pred CcccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
.-.|.++++++.+..+.++|+|-+ .-|..- +. ..-.....++..++++.+ .+.+|++-.+++.-+.++.+.+.|
T Consensus 128 ~l~MAD~St~ee~l~a~~~G~D~IGTTLsGY-T~---~~~~~~~pDf~lvk~l~~-~~~~vIAEGr~~tP~~Ak~a~~~G 202 (229)
T COG3010 128 QLAMADCSTFEEGLNAHKLGFDIIGTTLSGY-TG---YTEKPTEPDFQLVKQLSD-AGCRVIAEGRYNTPEQAKKAIEIG 202 (229)
T ss_pred cEEEeccCCHHHHHHHHHcCCcEEecccccc-cC---CCCCCCCCcHHHHHHHHh-CCCeEEeeCCCCCHHHHHHHHHhC
Confidence 346889999999999999999976 222100 00 000112456789998887 789999998888778999999999
Q ss_pred CCEEE-eCCCCCchhHHHHH
Q 021609 115 IDYVD-ESEVLTPADEENHI 133 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i 133 (310)
|+.|+ ++...-|.++-.++
T Consensus 203 a~aVvVGsAITRp~~It~~F 222 (229)
T COG3010 203 ADAVVVGSAITRPEEITQWF 222 (229)
T ss_pred CeEEEECcccCCHHHHHHHH
Confidence 99997 44444455554444
|
|
| >PLN02429 triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=93.60 E-value=1 Score=42.33 Aligned_cols=41 Identities=20% Similarity=0.347 Sum_probs=31.8
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~ 264 (310)
+++|+ -+|+| +++++.+++ ..+.||++||++.++++++...
T Consensus 263 ~irIL--YGGSV-~~~N~~el~~~~diDG~LVGgASL~~~~F~~I 304 (315)
T PLN02429 263 KTRII--YGGSV-NGGNSAELAKEEDIDGFLVGGASLKGPEFATI 304 (315)
T ss_pred CceEE--EcCcc-CHHHHHHHhcCCCCCEEEeecceecHHHHHHH
Confidence 57888 47888 578877776 6799999999999975554433
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=93.56 E-value=6.2 Score=37.59 Aligned_cols=188 Identities=13% Similarity=0.060 Sum_probs=104.5
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccC-cHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIG-HFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~-~~~~a~~~~~aG 114 (310)
++.+.+. .+++++.+..-|+++.+. ..+. .|. ......++.+.+... +||.+.+--+ .++.+..+.++|
T Consensus 22 N~~n~e~~~aii~AAEe~~sPvIlq~s~~--~~~~-~g~--~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~G 96 (347)
T TIGR01521 22 NVNNMEQMRAIMEAADKTDSPVILQASRG--ARSY-AGA--PFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLG 96 (347)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECCcc--hhhh-CCH--HHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 4455554 445577777766666321 1111 111 001234555556664 9999875433 568889999999
Q ss_pred CCEEE--eCCC------CCch-------hHHHHHHhcCC------C-C---c-----------E------EEecCCHHHH
Q 021609 115 IDYVD--ESEV------LTPA-------DEENHINKHNF------R-I---P-----------F------VCGCRNLGEA 152 (310)
Q Consensus 115 ad~Vi--~~~~------~~~~-------~~~~~i~~~~~------~-i---~-----------~------~v~~~t~~ea 152 (310)
.+-|- .+.. ++.+ ++.++....+. | + . . -...+++++|
T Consensus 97 FtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA 176 (347)
T TIGR01521 97 FTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEA 176 (347)
T ss_pred CCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHH
Confidence 99993 4432 1322 33333332211 1 0 0 0 0013467788
Q ss_pred HHHH-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeeccc-ChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCC
Q 021609 153 LRRI-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM-DDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAA 229 (310)
Q Consensus 153 ~~~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~-~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~ 229 (310)
.+-. +.|+|.+.+.-.+--| .++.. .+. ...-+++.++++++.+ ++|+++=.+
T Consensus 177 ~~Fv~~TgvD~LAvaiGt~HG-----------------~Yk~~~~p~-------~~~Ld~~rL~eI~~~v~~vPLVLHGg 232 (347)
T TIGR01521 177 ADFVKKTKVDALAVAIGTSHG-----------------AYKFTRKPT-------GEVLAIQRIEEIHARLPDTHLVMHGS 232 (347)
T ss_pred HHHHHHHCcCEEehhcccccC-----------------CcCCCCCCC-------hhhcCHHHHHHHHccCCCCCEEEeCC
Confidence 8755 4688887654211100 11100 000 0013578899998887 699885333
Q ss_pred CCCC--------------------CHHHHHHHHHcCCCEEEEcccccc
Q 021609 230 GGVA--------------------TPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 230 GGI~--------------------t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.|+. ..+++.++++.|..=|=++|.+-.
T Consensus 233 SG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~ 280 (347)
T TIGR01521 233 SSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRL 280 (347)
T ss_pred CCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHH
Confidence 4432 148999999999999999998874
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.35 Score=42.47 Aligned_cols=77 Identities=27% Similarity=0.421 Sum_probs=46.1
Q ss_pred EecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCC
Q 021609 144 CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLP 223 (310)
Q Consensus 144 v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iP 223 (310)
+.+.+.+++..+.+.|+|-|-+......+ +.+|+..+++.+++..++|
T Consensus 5 vcv~s~~~a~~A~~~GAdRiELc~~l~~G--------------------------------GlTPS~g~i~~~~~~~~ip 52 (201)
T PF03932_consen 5 VCVESLEDALAAEAGGADRIELCSNLEVG--------------------------------GLTPSLGLIRQAREAVDIP 52 (201)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEEBTGGGT---------------------------------B---HHHHHHHHHHTTSE
T ss_pred EEeCCHHHHHHHHHcCCCEEEECCCccCC--------------------------------CcCcCHHHHHHHHhhcCCc
Confidence 45678999999999999988765321100 2355677777777777788
Q ss_pred EEEe--CCCC--CCCH-------HHHHHHHHcCCCEEEEc
Q 021609 224 VVHF--AAGG--VATP-------ADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 224 Vi~i--A~GG--I~t~-------~d~~~~l~~GadgV~VG 252 (310)
+.+. .-+| +.|. +|+..+.++|+||+++|
T Consensus 53 v~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG 92 (201)
T PF03932_consen 53 VHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFG 92 (201)
T ss_dssp EEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred eEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEE
Confidence 7653 3344 1222 45666677899999988
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.2 Score=47.94 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=44.8
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc----cccccCCCHHHHHHHHHHHHh
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG----SGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG----sai~~a~dp~~~a~~l~~~i~ 273 (310)
..|+.++++++..++||++ -||.+++|+.++.++|++++.|+ +.+=-...+.....++.+++.
T Consensus 212 ~~w~~i~~~~~~~~~pviv---Kgv~~~~da~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~ 278 (356)
T PF01070_consen 212 LTWDDIEWIRKQWKLPVIV---KGVLSPEDAKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVG 278 (356)
T ss_dssp -SHHHHHHHHHHCSSEEEE---EEE-SHHHHHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHT
T ss_pred CCHHHHHHHhcccCCceEE---EecccHHHHHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhc
Confidence 4588899999989999984 78999999999999999999997 333333344455555555553
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=93.42 E-value=6.1 Score=36.09 Aligned_cols=83 Identities=19% Similarity=0.222 Sum_probs=47.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCC---HHHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSD---PQLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~---~~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
+.+..+.+.|+++++.+. .. .+ +. .+.. .+.++.+++.+ .+||++...-.. .+.++.+.++|+|
T Consensus 22 ~~i~~l~~~Gv~gi~~~G-st---GE--~~-~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad 94 (281)
T cd00408 22 RLVEFLIEAGVDGLVVLG-TT---GE--AP-TLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGAD 94 (281)
T ss_pred HHHHHHHHcCCCEEEECC-CC---cc--cc-cCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 567788889999984331 10 00 11 1111 23444445544 689998765432 3567788899999
Q ss_pred EEE-eCCC---CCchhHHHHHHh
Q 021609 117 YVD-ESEV---LTPADEENHINK 135 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~~ 135 (310)
++. .+.. .+..++.++.+.
T Consensus 95 ~v~v~pP~y~~~~~~~~~~~~~~ 117 (281)
T cd00408 95 GVLVVPPYYNKPSQEGIVAHFKA 117 (281)
T ss_pred EEEECCCcCCCCCHHHHHHHHHH
Confidence 996 3322 234555555443
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.1 Score=42.89 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=37.5
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
++||+ -+|+| +++++.+++ ..+.||++||++-++++++....+.+.+.+
T Consensus 213 ~v~IL--YGGSV-~~~N~~~l~~~~~iDG~LVG~asl~~~~f~~Ii~~~~~~~ 262 (355)
T PRK14905 213 KIPVL--YGGSV-NLENANELIMKPHIDGLFIGRSAWDAQCFHALIADALKAL 262 (355)
T ss_pred ceeEE--EeCcC-CHHHHHHHhcCCCCCEEEechhhccHHHHHHHHHHHHHhc
Confidence 57888 46888 588888877 678999999999998777766655555543
|
|
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.76 Score=41.57 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=62.6
Q ss_pred CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 137 ~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
..++.++.++.+.+.+..+.+.|++++++... + ...+.+++.+
T Consensus 67 ~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~----d---------------------------------l~n~~lL~~~ 109 (241)
T PF03102_consen 67 ELGIDFFSTPFDEESVDFLEELGVPAYKIASG----D---------------------------------LTNLPLLEYI 109 (241)
T ss_dssp HTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GG----G---------------------------------TT-HHHHHHH
T ss_pred HcCCEEEECCCCHHHHHHHHHcCCCEEEeccc----c---------------------------------ccCHHHHHHH
Confidence 35788888889998888888999999998632 1 2246678888
Q ss_pred hhcCCCCEEEeCCCCCCCHHHHHHHHH----cCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccch
Q 021609 217 KQLGRLPVVHFAAGGVATPADAAMMMQ----LGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAM 292 (310)
Q Consensus 217 ~~~~~iPVi~iA~GGI~t~~d~~~~l~----~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~ 292 (310)
.+ .+.||| .+-|..+.+++.++++ .|..-+++=-.+-.=|-|..- .+-..+..++..|+
T Consensus 110 A~-tgkPvI--lSTG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~-----------~NL~~i~~L~~~f~--- 172 (241)
T PF03102_consen 110 AK-TGKPVI--LSTGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPED-----------VNLRVIPTLKERFG--- 172 (241)
T ss_dssp HT-T-S-EE--EE-TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG-------------TTHHHHHHHHST---
T ss_pred HH-hCCcEE--EECCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHH-----------cChHHHHHHHHhcC---
Confidence 77 688998 4677789999887763 366655543333321222211 11234556666777
Q ss_pred hcccCccchhh
Q 021609 293 VGLNLSDHKVE 303 (310)
Q Consensus 293 ~~~~~~~~~~~ 303 (310)
.-+|.|||...
T Consensus 173 ~~vG~SDHt~g 183 (241)
T PF03102_consen 173 VPVGYSDHTDG 183 (241)
T ss_dssp SEEEEEE-SSS
T ss_pred CCEEeCCCCCC
Confidence 44477887653
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=9.4 Score=37.76 Aligned_cols=184 Identities=18% Similarity=0.186 Sum_probs=100.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC--------CCCCHHHHHHHHhh-cCcceeeccc----cCc--------H
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA--------RMSDPQLIKEIKQS-VTIPVMAKAR----IGH--------F 104 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--------~~~~~~~i~~i~~~-~~iPv~vk~~----~~~--------~ 104 (310)
+.|..+.++|...| +.- +|.. .....+.++.+++. -++++..-.+ .++ .
T Consensus 30 ~ia~~Ld~~Gv~~I-E~~---------ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~ 99 (448)
T PRK12331 30 PILEKLDNAGYHSL-EMW---------GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVE 99 (448)
T ss_pred HHHHHHHHcCCCEE-Eec---------CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHH
Confidence 57888999999976 431 1110 11234677778766 4677653222 121 3
Q ss_pred HHHHHHHHcCCCEEEeCCCC----CchhHHHHHHhcCCCCcEEEec-----CCH----HHHHHHHHhCCCEEEEcCCCCC
Q 021609 105 VEAQILEAIGIDYVDESEVL----TPADEENHINKHNFRIPFVCGC-----RNL----GEALRRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~----~~~~~~~~i~~~~~~i~~~v~~-----~t~----~ea~~~~~~Gad~V~v~g~~~~ 171 (310)
++++.+.++|+|.+-+.+.+ ...+.++..++.+..+...++. ++. +-++++.++|+|.|.+.=..+.
T Consensus 100 ~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~ 179 (448)
T PRK12331 100 SFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGI 179 (448)
T ss_pred HHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 56788999999998432222 2334455555554332222221 222 3455667789998876422221
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEe--CCCCCCCHHHHHHHHHcCCCEE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHF--AAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~i--A~GGI~t~~d~~~~l~~GadgV 249 (310)
.. |.. ..++++.+++..++|+-+= -.-|. ...+..+++++|||.|
T Consensus 180 l~----------------------P~~----------v~~lv~alk~~~~~pi~~H~Hnt~Gl-A~AN~laAieaGad~v 226 (448)
T PRK12331 180 LT----------------------PYV----------AYELVKRIKEAVTVPLEVHTHATSGI-AEMTYLKAIEAGADII 226 (448)
T ss_pred CC----------------------HHH----------HHHHHHHHHHhcCCeEEEEecCCCCc-HHHHHHHHHHcCCCEE
Confidence 11 111 1346666666556676420 35677 4677778899999977
Q ss_pred EEccccc--cCCCHHHHHHHHHHHHhc
Q 021609 250 FVGSGVF--KSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 250 ~VGsai~--~a~dp~~~a~~l~~~i~~ 274 (310)
=..-.=+ ++.||. .+.++..++.
T Consensus 227 D~sv~glg~gaGN~~--tE~lv~~L~~ 251 (448)
T PRK12331 227 DTAISPFAGGTSQPA--TESMVAALQD 251 (448)
T ss_pred EeeccccCCCcCCHh--HHHHHHHHHh
Confidence 5432211 234543 4556655543
|
|
| >PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.8 Score=43.01 Aligned_cols=165 Identities=11% Similarity=0.170 Sum_probs=83.7
Q ss_pred cCcceeeccccCcH----HHHHHHH-HcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEE
Q 021609 91 VTIPVMAKARIGHF----VEAQILE-AIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRT 165 (310)
Q Consensus 91 ~~iPv~vk~~~~~~----~~a~~~~-~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v 165 (310)
.++|+++....++. ..++... ..|+|.|+.+.-+....+...+...+.++.+.+-..++. +....++. .
T Consensus 87 ~~~~vI~DaKrgDI~T~~~yA~a~f~~~~aDAiTv~pymG~Dsl~pfl~~~~kgvfvL~~tSNpg-a~~~Q~~~-----~ 160 (477)
T PRK05500 87 PDIPIILDAKHGDLNTSTIFAKTIFEQWQVDAVTLSPYAGQDHVAPFLVYPDKGVFILCHTSNPG-AIALQEYP-----T 160 (477)
T ss_pred cCCeEEEEecccChHHHHHHHHHHHhhcCCCEEEECCccCccchHHHHhcCCCcEEEEEeCCCcC-HHHHhhcc-----c
Confidence 47889986555532 2345555 499999976655555555555543334455555433331 11111110 1
Q ss_pred cCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHH
Q 021609 166 KGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQ 243 (310)
Q Consensus 166 ~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~ 243 (310)
.+. +...+..+.+... .. ++++ ..-.+.+ .+.++.+++. .+.++++. +=|- -..++.+++.
T Consensus 161 ~g~---~ly~~v~~~~~~~-~~--------~~~~---g~VvGAT~p~~~~~iR~~~p~~~iL~P-GiGA-QGg~~~~~~~ 223 (477)
T PRK05500 161 PEN---PFYLQVVKEAKTW-GT--------PEQL---GLEVGTTNPEVLAKIRQIAPERLILLR-SIWA-EKGNLNQILT 223 (477)
T ss_pred CCC---cHHHHHHHHHHHh-CC--------CCce---EEEECCCChHHHHHHHHhCCCCEEEcc-cccc-CCCCHHHHHH
Confidence 111 1100111111110 00 0000 0001222 3446666654 44556542 1121 1223444466
Q ss_pred cCCC------EEEEccccccCCCHHHHHHHHHHHHhccCCh
Q 021609 244 LGCD------GVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278 (310)
Q Consensus 244 ~Gad------gV~VGsai~~a~dp~~~a~~l~~~i~~~~~~ 278 (310)
.|.+ -+.+|++|+.++||...++++.+.++..+..
T Consensus 224 ~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~~i~~~~~~ 264 (477)
T PRK05500 224 AGLNSNGDGLLIPVPQDLLGAANLKEQVKSLREEINQIRQQ 264 (477)
T ss_pred hhcccCcCceEEEeCHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 7766 7899999999999999999999999876643
|
|
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=93.06 E-value=7.6 Score=37.33 Aligned_cols=45 Identities=24% Similarity=0.510 Sum_probs=32.2
Q ss_pred CCEEEeCCCCCCCHHHHHHHH-HcCCCE-EEEccccccCC-CHHHHHHHHHH
Q 021609 222 LPVVHFAAGGVATPADAAMMM-QLGCDG-VFVGSGVFKSG-DPVKRAQAIVR 270 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l-~~Gadg-V~VGsai~~a~-dp~~~a~~l~~ 270 (310)
.|+ .+||+ ++..+.+++ ..|.|- +.+|..++.++ .|..-+++|++
T Consensus 319 ~Pv---~sgG~-~~~~v~~l~~~~G~dv~~~~GGgi~gHp~g~~ag~~a~r~ 366 (367)
T cd08205 319 LPV---PSGGM-HPGRVPELYRDYGPDVILLAGGGILGHPDGAAAGVRAFRQ 366 (367)
T ss_pred eee---ccCCC-CHHHHHHHHHHhCCcEEEEcCchhcCCCCChHHHHHHHhc
Confidence 466 58998 689999988 468774 45688999877 55555555543
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.02 E-value=1.1 Score=44.66 Aligned_cols=199 Identities=21% Similarity=0.260 Sum_probs=102.7
Q ss_pred eeeeccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHH----HHHHHHhhc
Q 021609 16 ITETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQ----LIKEIKQSV 91 (310)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~----~i~~i~~~~ 91 (310)
.-+|+++.+-=.-|+.. .|+--..-+++.+.+..++|--+ +| +.||.- +.+ .++++....
T Consensus 23 ~v~TkfsrLtGr~Pill---aGMTPtTVdp~ivAAaAnAGhwa--EL--------AGGGq~---t~e~~~~~i~ql~~~l 86 (717)
T COG4981 23 KVSTKFSRLTGRSPILL---AGMTPTTVDPDIVAAAANAGHWA--EL--------AGGGQV---TEEIFTNAIEQLVSLL 86 (717)
T ss_pred EEeechhhhcCCCCeee---cCCCCCcCCHHHHHHHhcCCcee--ee--------cCCccc---CHHHHHHHHHHHHhcc
Confidence 33455555544444444 66655556788999999988553 55 233331 123 333332211
Q ss_pred --Ccceee----------ccccCcHHHHHHHHHcCC--CEEEeCCC-CCchhHHHHHHhc-CCCCcEEEe-cCCHHHHHH
Q 021609 92 --TIPVMA----------KARIGHFVEAQILEAIGI--DYVDESEV-LTPADEENHINKH-NFRIPFVCG-CRNLGEALR 154 (310)
Q Consensus 92 --~iPv~v----------k~~~~~~~~a~~~~~aGa--d~Vi~~~~-~~~~~~~~~i~~~-~~~i~~~v~-~~t~~ea~~ 154 (310)
+.-..+ ++.++-.-.++.+.+.|+ |+|+++.. .+.++..++++.. ..+++.++- .-+.+....
T Consensus 87 epG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fKPGtIeqI~s 166 (717)
T COG4981 87 EPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFKPGTIEQIRS 166 (717)
T ss_pred CCCccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEecCCcHHHHHH
Confidence 111122 222222234566667554 55655544 3455556666553 234554432 444444333
Q ss_pred ---HHHhCCCE-EEEc--CCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcCCCCEEEe
Q 021609 155 ---RIREGAAM-IRTK--GEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLGRLPVVHF 227 (310)
Q Consensus 155 ---~~~~Gad~-V~v~--g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~iPVi~i 227 (310)
.+.+...+ |.++ |...+|+- +.. +. .+-+..+.+++...++-++
T Consensus 167 vi~IAka~P~~pIilq~egGraGGHH------------------Swe---------Dld~llL~tYs~lR~~~NIvl~-- 217 (717)
T COG4981 167 VIRIAKANPTFPIILQWEGGRAGGHH------------------SWE---------DLDDLLLATYSELRSRDNIVLC-- 217 (717)
T ss_pred HHHHHhcCCCCceEEEEecCccCCcc------------------chh---------hcccHHHHHHHHHhcCCCEEEE--
Confidence 23333332 2222 22112220 000 11 1114567778877666665
Q ss_pred CCCCCCCHHHHHHHHH------cC-----CCEEEEccccccCC
Q 021609 228 AAGGVATPADAAMMMQ------LG-----CDGVFVGSGVFKSG 259 (310)
Q Consensus 228 A~GGI~t~~d~~~~l~------~G-----adgV~VGsai~~a~ 259 (310)
..|||.++++....+- .| +||+++|++.|-++
T Consensus 218 vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatK 260 (717)
T COG4981 218 VGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATK 260 (717)
T ss_pred ecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhh
Confidence 7999999999987651 23 79999999999754
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.49 Score=44.42 Aligned_cols=82 Identities=33% Similarity=0.338 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHH-HcCCCEEE-eC
Q 021609 45 PEQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE-AIGIDYVD-ES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~-~aGad~Vi-~~ 121 (310)
.+.++.++++|+++| .+. +... .+.....+.+.++++++.+++||++...+...++++.+. ..|+|+|. +.
T Consensus 150 ~~~a~~l~~~G~d~i-~vh~r~~~-----~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR 223 (319)
T TIGR00737 150 VEAARIAEDAGAQAV-TLHGRTRA-----QGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGR 223 (319)
T ss_pred HHHHHHHHHhCCCEE-EEEccccc-----ccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEECh
Confidence 377888999999988 332 1111 111112347889999999999999988887778887777 68999995 33
Q ss_pred CCCCchhHHHH
Q 021609 122 EVLTPADEENH 132 (310)
Q Consensus 122 ~~~~~~~~~~~ 132 (310)
..+..+.+...
T Consensus 224 ~~l~~P~l~~~ 234 (319)
T TIGR00737 224 GALGNPWLFRQ 234 (319)
T ss_pred hhhhCChHHHH
Confidence 33433334333
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.7 Score=36.46 Aligned_cols=110 Identities=22% Similarity=0.232 Sum_probs=64.1
Q ss_pred HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCCC---
Q 021609 48 ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESEV--- 123 (310)
Q Consensus 48 A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~--- 123 (310)
++.+.++|++++ +++.. .+.......+.++++++.+ +.|++++...........+.+.|+|.+.....
T Consensus 77 a~~~~~~g~d~v-~l~~~-------~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~ 148 (200)
T cd04722 77 AAAARAAGADGV-EIHGA-------VGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGG 148 (200)
T ss_pred HHHHHHcCCCEE-EEecc-------CCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCC
Confidence 467889999987 55310 0000000146777888777 89999887643211111268899999952211
Q ss_pred ---CCc-h---hHHHHHHhcCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEc
Q 021609 124 ---LTP-A---DEENHINKHNFRIPFVC--GCRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 124 ---~~~-~---~~~~~i~~~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~ 166 (310)
... . .....++ ...++++++ ++++.+++..+.+.|+|.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~-~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 149 GGGRDAVPIADLLLILAK-RGSKVPVIAGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred CCCccCchhHHHHHHHHH-hcCCCCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence 111 1 1222222 234555544 3788889999888899998763
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=92.68 E-value=3.3 Score=37.90 Aligned_cols=101 Identities=10% Similarity=0.060 Sum_probs=48.0
Q ss_pred cCCCHHHHHHHHHcCCcEEEeccCC-cccccccCC--CCCCCCHHHHHHHHhhcCcceeecc-ccC-c--H----HHH-H
Q 021609 41 DVVTPEQARVAEEAGACAVMALERV-PADIRSQGG--VARMSDPQLIKEIKQSVTIPVMAKA-RIG-H--F----VEA-Q 108 (310)
Q Consensus 41 ~~~~~~~A~~~~~~Ga~~i~~L~~~-~~~~~~~~G--~~~~~~~~~i~~i~~~~~iPv~vk~-~~~-~--~----~~a-~ 108 (310)
..=|+..|+.++++|++.|..=+.. ........+ ..+.......+.+++....|+++-+ .++ + . .-+ +
T Consensus 21 tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na~r 100 (263)
T TIGR00222 21 TAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNAAR 100 (263)
T ss_pred eccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHHHH
Confidence 3345678999999999987210100 000111000 1111112456667777555655532 221 1 1 223 3
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEE
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINKHNFRIPFV 143 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~ 143 (310)
.+.++||++|-+-+.....+.++.+.+ .+++++
T Consensus 101 l~~eaGa~aVkiEgg~~~~~~i~~l~~--~gIpV~ 133 (263)
T TIGR00222 101 VMQETGANAVKLEGGEWLVETVQMLTE--RGVPVV 133 (263)
T ss_pred HHHHhCCeEEEEcCcHhHHHHHHHHHH--CCCCEE
Confidence 444599999953333333344444433 345544
|
Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase. |
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=92.60 E-value=9.5 Score=36.13 Aligned_cols=128 Identities=17% Similarity=0.122 Sum_probs=75.8
Q ss_pred HHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEe--cCCHHHHHHHHH----
Q 021609 85 KEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESEVLTPADEENHINKHNFRIPFVCG--CRNLGEALRRIR---- 157 (310)
Q Consensus 85 ~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~--~~t~~ea~~~~~---- 157 (310)
.+.++..+++++.--+ +.+.++.+.+.|++.+ +.+..+...++.+.+.+. +.+++++ ..|.+|...+.+
T Consensus 82 ~~~~~~~Gi~~~stpf--d~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~--gkPvilStGmatl~Ei~~Av~~i~~ 157 (329)
T TIGR03569 82 KEYCESKGIEFLSTPF--DLESADFLEDLGVPRFKIPSGEITNAPLLKKIARF--GKPVILSTGMATLEEIEAAVGVLRD 157 (329)
T ss_pred HHHHHHhCCcEEEEeC--CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhc--CCcEEEECCCCCHHHHHHHHHHHHH
Confidence 3335566888775433 3466788889999988 666667777777777653 4455554 568888777654
Q ss_pred hCCC---EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCC
Q 021609 158 EGAA---MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVAT 234 (310)
Q Consensus 158 ~Gad---~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t 234 (310)
.|.. ++.+|.... +|+. ....++..+..+++..++||.. ++=-..
T Consensus 158 ~G~~~~~i~llhC~s~--------------------YP~~----------~~~~nL~~I~~Lk~~f~~pVG~--SdHt~G 205 (329)
T TIGR03569 158 AGTPDSNITLLHCTTE--------------------YPAP----------FEDVNLNAMDTLKEAFDLPVGY--SDHTLG 205 (329)
T ss_pred cCCCcCcEEEEEECCC--------------------CCCC----------cccCCHHHHHHHHHHhCCCEEE--CCCCcc
Confidence 3653 555553210 1111 1123466677777767789873 332211
Q ss_pred HHHHHHHHHcCCCE
Q 021609 235 PADAAMMMQLGCDG 248 (310)
Q Consensus 235 ~~d~~~~l~~Gadg 248 (310)
..-...+..+||+-
T Consensus 206 ~~~~~aAvalGA~i 219 (329)
T TIGR03569 206 IEAPIAAVALGATV 219 (329)
T ss_pred HHHHHHHHHcCCCE
Confidence 22334445789993
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=92.59 E-value=8.3 Score=35.45 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=45.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC-CCCCH---HHHHHHHhh--cCcceeeccccC----cHHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA-RMSDP---QLIKEIKQS--VTIPVMAKARIG----HFVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~~~~---~~i~~i~~~--~~iPv~vk~~~~----~~~~a~~~~~aGa 115 (310)
+.++.+.+.|.++++... . .|.. .+... +.++.+.+. ..+||++...-. ..+.++.+.++|+
T Consensus 26 ~~i~~l~~~Gv~gl~~~G-s-------tGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Ga 97 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLG-S-------TGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGA 97 (289)
T ss_dssp HHHHHHHHTTSSEEEESS-T-------TTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHcCCCEEEECC-C-------CcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCc
Confidence 578888899999984431 0 0111 12111 233333333 368998875432 2467888999999
Q ss_pred CEEE-eCCC---CCchhHHHHHH
Q 021609 116 DYVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 116 d~Vi-~~~~---~~~~~~~~~i~ 134 (310)
|++. .+.. .+..++.++++
T Consensus 98 d~v~v~~P~~~~~s~~~l~~y~~ 120 (289)
T PF00701_consen 98 DAVLVIPPYYFKPSQEELIDYFR 120 (289)
T ss_dssp SEEEEEESTSSSCCHHHHHHHHH
T ss_pred eEEEEeccccccchhhHHHHHHH
Confidence 9995 3322 34555555553
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=92.55 E-value=1 Score=40.77 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccc--cCCCCCCCCHHHHHHHH---hhc----Ccceeec-----cc-cCc---HHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRS--QGGVARMSDPQLIKEIK---QSV----TIPVMAK-----AR-IGH---FVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~--~~G~~~~~~~~~i~~i~---~~~----~iPv~vk-----~~-~~~---~~~a 107 (310)
+.++.+.++|+.++ .++.+....+. .++...+...+.+++++ ++. +++|++. .. .+. .+.+
T Consensus 88 ~~v~~~~~~G~~gv-~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra 166 (243)
T cd00377 88 RTVRELEEAGAAGI-HIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERA 166 (243)
T ss_pred HHHHHHHHcCCEEE-EEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHH
Confidence 45788889999997 66522111111 11222233344555553 322 3555554 11 121 4667
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecC-CH--HHHHHHHHhCCCEEEEcC
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR-NL--GEALRRIREGAAMIRTKG 167 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~--~ea~~~~~~Gad~V~v~g 167 (310)
+.+.++|||.+......+..++.+..+. .+.++.+-.. .. .....+.++|+..+....
T Consensus 167 ~ay~~AGAD~v~v~~~~~~~~~~~~~~~--~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~ 227 (243)
T cd00377 167 KAYAEAGADGIFVEGLKDPEEIRAFAEA--PDVPLNVNMTPGGNLLTVAELAELGVRRVSYGL 227 (243)
T ss_pred HHHHHcCCCEEEeCCCCCHHHHHHHHhc--CCCCEEEEecCCCCCCCHHHHHHCCCeEEEECh
Confidence 8899999999965444455566555543 3444444321 11 245566788998887643
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.95 Score=41.87 Aligned_cols=74 Identities=27% Similarity=0.309 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCcEEEeccCC-----------cccccccCC---CCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV-----------PADIRSQGG---VAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~-----------~~~~~~~~G---~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~ 110 (310)
+.++.++++|++++...|.. |......+| ... ....+.++++++.+++||+....+...+++..+
T Consensus 170 ~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da~~~ 249 (296)
T cd04740 170 EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDALEF 249 (296)
T ss_pred HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 67888999999998443310 000000111 111 113478888888899999998887777889888
Q ss_pred HHcCCCEEE
Q 021609 111 EAIGIDYVD 119 (310)
Q Consensus 111 ~~aGad~Vi 119 (310)
.++|||.|-
T Consensus 250 l~~GAd~V~ 258 (296)
T cd04740 250 LMAGASAVQ 258 (296)
T ss_pred HHcCCCEEE
Confidence 899999994
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=8.7 Score=35.52 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=46.5
Q ss_pred HHHHHHHH-cCCCEEE--eCC----CCCchhHHHHH---Hhc-CCCCcEEEec--CCHHHHH----HHHHhCCCEEEEcC
Q 021609 105 VEAQILEA-IGIDYVD--ESE----VLTPADEENHI---NKH-NFRIPFVCGC--RNLGEAL----RRIREGAAMIRTKG 167 (310)
Q Consensus 105 ~~a~~~~~-aGad~Vi--~~~----~~~~~~~~~~i---~~~-~~~i~~~v~~--~t~~ea~----~~~~~Gad~V~v~g 167 (310)
..++.+.+ .|++++. ++- .++..|-.+.+ .+. .-.+++++++ .+.+++. .+.+.|+|.+.+..
T Consensus 28 ~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~ 107 (293)
T PRK04147 28 RLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAVT 107 (293)
T ss_pred HHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 45677888 9999995 322 24444443333 232 2236666554 5565554 45678999998887
Q ss_pred CCCCc-chHHHHHHHHhhc
Q 021609 168 EAGTG-NIIEAVRHVRSVM 185 (310)
Q Consensus 168 ~~~~~-~~~~~~~~~r~~~ 185 (310)
+.+.. +-....++.++..
T Consensus 108 P~y~~~~~~~l~~~f~~va 126 (293)
T PRK04147 108 PFYYPFSFEEICDYYREII 126 (293)
T ss_pred CcCCCCCHHHHHHHHHHHH
Confidence 65422 2235566666543
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.5 Score=44.38 Aligned_cols=84 Identities=27% Similarity=0.247 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHH-HcCCCEEE-eC
Q 021609 45 PEQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE-AIGIDYVD-ES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~-~aGad~Vi-~~ 121 (310)
.+.++.++++|++.| .+- +... .. +.|. ..+.+.++++++.+++||+.+..+...++++.+. ..|+|+|- +-
T Consensus 151 ~~~a~~l~~~Gvd~i-~Vh~Rt~~-~~-y~g~--~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGR 225 (312)
T PRK10550 151 FEIADAVQQAGATEL-VVHGRTKE-DG-YRAE--HINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGR 225 (312)
T ss_pred HHHHHHHHhcCCCEE-EECCCCCc-cC-CCCC--cccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcH
Confidence 378899999999988 332 2111 11 1111 1146889999999999999988877777787655 59999994 43
Q ss_pred CCCCchhHHHHH
Q 021609 122 EVLTPADEENHI 133 (310)
Q Consensus 122 ~~~~~~~~~~~i 133 (310)
..+..+.+.+.+
T Consensus 226 g~l~nP~lf~~~ 237 (312)
T PRK10550 226 GALNIPNLSRVV 237 (312)
T ss_pred HhHhCcHHHHHh
Confidence 444444454444
|
|
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.52 Score=44.99 Aligned_cols=62 Identities=24% Similarity=0.402 Sum_probs=44.9
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE----ccccccCCCHHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV----GSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V----Gsai~~a~dp~~~a~~l~~~i 272 (310)
.+|+.++++++..++||++ .||.+++|+..+.++|+|+|+| |+.+...+.+.....++.+.+
T Consensus 208 ~~~~~l~~lr~~~~~Pviv---Kgv~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~ 273 (351)
T cd04737 208 LSPADIEFIAKISGLPVIV---KGIQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAV 273 (351)
T ss_pred CCHHHHHHHHHHhCCcEEE---ecCCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHh
Confidence 3578889999888999983 6899999999999999999999 445444333333333444443
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.88 Score=40.87 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=52.8
Q ss_pred chhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHH
Q 021609 29 GLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQ 108 (310)
Q Consensus 29 ~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~ 108 (310)
|+..+++.|+- ....+.++.++++|+++| +.. ... .| ...+.+.+++++ +++||+.+..+...++++
T Consensus 141 pVsvKir~g~~--~~~~~la~~l~~aG~d~i-hv~-----~~~-~g--~~ad~~~I~~i~--~~ipVIgnGgI~s~eda~ 207 (233)
T cd02911 141 PVSVKIRAGVD--VDDEELARLIEKAGADII-HVD-----AMD-PG--NHADLKKIRDIS--TELFIIGNNSVTTIESAK 207 (233)
T ss_pred CEEEEEcCCcC--cCHHHHHHHHHHhCCCEE-EEC-----cCC-CC--CCCcHHHHHHhc--CCCEEEEECCcCCHHHHH
Confidence 44444444421 234588999999999986 442 011 11 122356777766 789999988887788998
Q ss_pred HHHHcCCCEEE
Q 021609 109 ILEAIGIDYVD 119 (310)
Q Consensus 109 ~~~~aGad~Vi 119 (310)
.+.+.|+|.|-
T Consensus 208 ~~l~~GaD~Vm 218 (233)
T cd02911 208 EMFSYGADMVS 218 (233)
T ss_pred HHHHcCCCEEE
Confidence 88889999994
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=92.23 E-value=2.1 Score=39.91 Aligned_cols=92 Identities=17% Similarity=0.256 Sum_probs=55.1
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.|.+.|.++-. ++++.++- .+.++.+.+. .++||++ ..
T Consensus 31 v~~li~~Gv~gi~~~GttGE~-------------------~~Ls~eEr----------~~v~~~~v~~~~grvpvia-G~ 80 (299)
T COG0329 31 VEFLIAAGVDGLVVLGTTGES-------------------PTLTLEER----------KEVLEAVVEAVGGRVPVIA-GV 80 (299)
T ss_pred HHHHHHcCCCEEEECCCCccc-------------------hhcCHHHH----------HHHHHHHHHHHCCCCcEEE-ec
Confidence 455678899999888765421 22332221 2233333333 4699984 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
|+-++.+-+.. +.+.|+||+++-...|-.+++....+-|....+
T Consensus 81 g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~ 127 (299)
T COG0329 81 GSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAE 127 (299)
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHH
Confidence 56544433332 235799999999999987776666654444443
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.21 E-value=8.4 Score=34.60 Aligned_cols=66 Identities=20% Similarity=0.044 Sum_probs=36.2
Q ss_pred cHHHHHHHHHcCCCEEE--eC----CCCCchhHHHHHHhcCC-CCcEEEecC----CHH----HHHHHHHhCCCEEEEcC
Q 021609 103 HFVEAQILEAIGIDYVD--ES----EVLTPADEENHINKHNF-RIPFVCGCR----NLG----EALRRIREGAAMIRTKG 167 (310)
Q Consensus 103 ~~~~a~~~~~aGad~Vi--~~----~~~~~~~~~~~i~~~~~-~i~~~v~~~----t~~----ea~~~~~~Gad~V~v~g 167 (310)
..+++..+.+.|+|.|. .+ ..-.+...++.+.+.-. ..++-+.+- .+. .+..+...|+|||++.-
T Consensus 9 ~~~EA~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl 88 (235)
T PF04476_consen 9 NVEEAEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGL 88 (235)
T ss_pred CHHHHHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEec
Confidence 45789999999999996 22 12234444444444222 233322221 111 23334456999999864
Q ss_pred C
Q 021609 168 E 168 (310)
Q Consensus 168 ~ 168 (310)
.
T Consensus 89 ~ 89 (235)
T PF04476_consen 89 F 89 (235)
T ss_pred C
Confidence 4
|
|
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=92.18 E-value=11 Score=36.11 Aligned_cols=47 Identities=32% Similarity=0.597 Sum_probs=35.9
Q ss_pred CCEEEeCCCCCCCHHHHHHHH-HcCCCE-EEEccccccCCC-HHHHHHHHHHHH
Q 021609 222 LPVVHFAAGGVATPADAAMMM-QLGCDG-VFVGSGVFKSGD-PVKRAQAIVRAV 272 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l-~~Gadg-V~VGsai~~a~d-p~~~a~~l~~~i 272 (310)
.|+ .+||+ ++..+.+++ ..|-|- +.+|..++.+++ +..-+++|++++
T Consensus 315 ~Pv---~sgG~-~~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~~a~rqa~ 364 (364)
T cd08210 315 LPA---PGGGM-SVERAPEMVELYGPDVMLLIGGSLLRAGDDLTENTRAFVEAV 364 (364)
T ss_pred cCc---CCCCc-CHHHHHHHHHHcCCcEEEEccccccCCCCChHHHHHHHHhhC
Confidence 577 68998 689999998 468773 456899999876 777777777653
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.65 Score=44.57 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=48.0
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc----cccccCCCHHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG----SGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG----sai~~a~dp~~~a~~l~~~i 272 (310)
..|+.++++++..++||++ -||.+++|+..+.++|+|+|.|+ +.+...+.+.....++.+++
T Consensus 215 ~~w~~i~~l~~~~~~Pviv---KGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av 280 (367)
T TIGR02708 215 LSPRDIEEIAGYSGLPVYV---KGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAV 280 (367)
T ss_pred CCHHHHHHHHHhcCCCEEE---eCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHh
Confidence 3578899999888999983 79999999999999999999876 45555445555555566555
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.95 Score=42.04 Aligned_cols=74 Identities=28% Similarity=0.385 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCcEEEecc--CCcc-cc--------cccCCCC----CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALE--RVPA-DI--------RSQGGVA----RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~--~~~~-~~--------~~~~G~~----~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~ 110 (310)
+.++.++++|+++|...| +... +. ...+|.+ .....+.++++++.+++||+....+...+++..+
T Consensus 173 ~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~~ 252 (301)
T PRK07259 173 EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIEF 252 (301)
T ss_pred HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHHH
Confidence 578889999999984444 1100 00 0111111 1124678889999899999998888777888888
Q ss_pred HHcCCCEEE
Q 021609 111 EAIGIDYVD 119 (310)
Q Consensus 111 ~~aGad~Vi 119 (310)
..+|||.|-
T Consensus 253 l~aGAd~V~ 261 (301)
T PRK07259 253 IMAGASAVQ 261 (301)
T ss_pred HHcCCCcee
Confidence 899999994
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.00 E-value=2.8 Score=40.55 Aligned_cols=160 Identities=21% Similarity=0.220 Sum_probs=91.2
Q ss_pred HHHHHHHhhc-Ccceeecccc----Cc--------HHHHHHHHHcCCCEEEeCCCCC-chhH---HHHHHhcCCC----C
Q 021609 82 QLIKEIKQSV-TIPVMAKARI----GH--------FVEAQILEAIGIDYVDESEVLT-PADE---ENHINKHNFR----I 140 (310)
Q Consensus 82 ~~i~~i~~~~-~iPv~vk~~~----~~--------~~~a~~~~~aGad~Vi~~~~~~-~~~~---~~~i~~~~~~----i 140 (310)
+.++++|+.. +.|+..-.|. |+ ..+++.+.+.|.|.+-+=|+++ +..+ .+.+++++.. +
T Consensus 66 eRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i 145 (472)
T COG5016 66 ERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTI 145 (472)
T ss_pred HHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEE
Confidence 6778888775 6776543221 11 3567888899999995545443 3333 4444444432 2
Q ss_pred cEEEe-cCCHHH----HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHH
Q 021609 141 PFVCG-CRNLGE----ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQ 215 (310)
Q Consensus 141 ~~~v~-~~t~~e----a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~ 215 (310)
.+..+ +||.+- ++.+.+.|+|.|.+.-..+.- + .....++++.
T Consensus 146 ~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGll----------------------t----------P~~ayelVk~ 193 (472)
T COG5016 146 SYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLL----------------------T----------PYEAYELVKA 193 (472)
T ss_pred EeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccC----------------------C----------hHHHHHHHHH
Confidence 23333 566533 555667888888764221100 0 1112678888
Q ss_pred HhhcCCCCEEE--eCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 216 TKQLGRLPVVH--FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 216 i~~~~~iPVi~--iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
+++...+||.+ =+..|+. .-...++.++|+|++=-.=+=+......-..+.++.+++.
T Consensus 194 iK~~~~~pv~lHtH~TsG~a-~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~g 253 (472)
T COG5016 194 IKKELPVPVELHTHATSGMA-EMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAALRG 253 (472)
T ss_pred HHHhcCCeeEEecccccchH-HHHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHHHhcC
Confidence 88888888864 2788984 6666788899999873221111111111124567777765
|
|
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.8 Score=40.47 Aligned_cols=81 Identities=30% Similarity=0.272 Sum_probs=53.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHc-CCCEEE-eCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAI-GIDYVD-ESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~a-Gad~Vi-~~~~ 123 (310)
+.++.+.+.|++.| .+..-....... ...+.+.++++++.+++||++...+...+++..+.+. |+|.|. +...
T Consensus 142 ~~~~~l~~~Gvd~i-~v~~~~~~~~~~----~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~ 216 (231)
T cd02801 142 ELAKALEDAGASAL-TVHGRTREQRYS----GPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGA 216 (231)
T ss_pred HHHHHHHHhCCCEE-EECCCCHHHcCC----CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHh
Confidence 57888899999987 432111011111 1234788899999999999998888777788777776 999995 3333
Q ss_pred CCchhHHH
Q 021609 124 LTPADEEN 131 (310)
Q Consensus 124 ~~~~~~~~ 131 (310)
+..+.+.+
T Consensus 217 l~~P~~~~ 224 (231)
T cd02801 217 LGNPWLFR 224 (231)
T ss_pred HhCCHHHH
Confidence 33344433
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III | Back alignment and domain information |
|---|
Probab=91.87 E-value=13 Score=36.24 Aligned_cols=54 Identities=30% Similarity=0.442 Sum_probs=43.2
Q ss_pred CCEEEeCCCCCCCHHHHHHHH-HcCCCEE-EEccccccCC-CHHHHHHHHHHHHhccCChh
Q 021609 222 LPVVHFAAGGVATPADAAMMM-QLGCDGV-FVGSGVFKSG-DPVKRAQAIVRAVTHYSDPE 279 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l-~~GadgV-~VGsai~~a~-dp~~~a~~l~~~i~~~~~~~ 279 (310)
.|| .+||+ ++..+.+++ ..|-|-+ .+|..++.++ .|..-+++++++++.+.+..
T Consensus 337 ~Pv---~sGG~-~~~~vp~~~~~~G~Dvil~~GGGi~gHp~G~~aGa~A~rqA~ea~~~G~ 393 (412)
T TIGR03326 337 FPV---SSGGL-HPGLVPPLIDALGKDLVIQAGGGVHGHPDGPRAGAKALRAAIDAIIEGI 393 (412)
T ss_pred eEe---cCCCC-ChhHHHHHHHhcCCceEEecCCccccCCCChhhHHHHHHHHHHHHHcCC
Confidence 677 69999 699999999 5798854 5689999864 67788889999998876543
|
Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.35 Score=46.69 Aligned_cols=43 Identities=28% Similarity=0.499 Sum_probs=38.1
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
..+|+.++++++..++|+++ .||.+++|+..+.++|+|+|+|.
T Consensus 239 ~~tW~~i~~lr~~~~~pviv---KgV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 239 SLTWEDLAFLREWTDLPIVL---KGILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred CCCHHHHHHHHHhcCCCEEE---ecCCCHHHHHHHHHCCCCEEEEc
Confidence 34588999999888999983 79999999999999999999986
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.82 E-value=6.2 Score=37.56 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEecC-CHHHHHHHHHhCCCEEEEcCC
Q 021609 104 FVEAQILEAIGIDYV-DESEVLTPADEENHINKHNFRIPFVCGCR-NLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 104 ~~~a~~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~~ea~~~~~~Gad~V~v~g~ 168 (310)
..++..+.++|+|.| +...+.+..+..+.+++ ...+|+++|+| +..-|..+++.|+|-+.+++.
T Consensus 45 v~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~-~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPG 110 (360)
T PRK00366 45 VAQIKRLARAGCEIVRVAVPDMEAAAALPEIKK-QLPVPLVADIHFDYRLALAAAEAGADALRINPG 110 (360)
T ss_pred HHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHH-cCCCCEEEecCCCHHHHHHHHHhCCCEEEECCC
Confidence 366788899999999 44444444455555544 34699999986 778899999999999999854
|
|
| >TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2 | Back alignment and domain information |
|---|
Probab=91.81 E-value=6.2 Score=36.10 Aligned_cols=53 Identities=17% Similarity=0.148 Sum_probs=35.7
Q ss_pred HHHHHhhc-CCCCEEEe---CCCCCCCHHHHHHHH-HcCCC-EEEEccccccCCCHHHHHH
Q 021609 212 LVMQTKQL-GRLPVVHF---AAGGVATPADAAMMM-QLGCD-GVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 212 ~i~~i~~~-~~iPVi~i---A~GGI~t~~d~~~~l-~~Gad-gV~VGsai~~a~dp~~~a~ 266 (310)
.++.+++. .+.|++.. +.|| +++|..+.+ ..|++ .++|||+|+.+.||...++
T Consensus 200 e~~~iR~~~~~~~il~PGigaqG~--~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~~ 258 (261)
T TIGR02127 200 DLLRLRIEMPTAPFLVPGFGAQGA--EAADLRGLFGADGSGLLINSSRGVLFAGPRSSALV 258 (261)
T ss_pred HHHHHHHhCCCCeEEeCCcCCCCC--CHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHHH
Confidence 35555543 34555542 3333 578887766 46888 8999999999999976544
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme. |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=91.78 E-value=11 Score=35.59 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=42.6
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCC-cccccccCC--CCCCCCHHHHHHHHhhcCcceee-ccccC-c---HHH----
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERV-PADIRSQGG--VARMSDPQLIKEIKQSVTIPVMA-KARIG-H---FVE---- 106 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~-~~~~~~~~G--~~~~~~~~~i~~i~~~~~iPv~v-k~~~~-~---~~~---- 106 (310)
+...=|+..|+.+.++|+|.|..=+.. ........+ ..+......++.+++....|+++ ...++ + .++
T Consensus 39 mlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~n 118 (332)
T PLN02424 39 MVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVES 118 (332)
T ss_pred EEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHHH
Confidence 333446688999999999987211100 000000000 00011123556667778899888 43333 2 122
Q ss_pred HHHH-HHcCCCEEE
Q 021609 107 AQIL-EAIGIDYVD 119 (310)
Q Consensus 107 a~~~-~~aGad~Vi 119 (310)
+..+ .++||+.|=
T Consensus 119 A~rl~~eaGa~aVK 132 (332)
T PLN02424 119 AVRMLKEGGMDAVK 132 (332)
T ss_pred HHHHHHHhCCcEEE
Confidence 4344 569999994
|
|
| >PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.92 Score=40.23 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=58.9
Q ss_pred HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc----C--------cHHHHHHHHHcCC
Q 021609 48 ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI----G--------HFVEAQILEAIGI 115 (310)
Q Consensus 48 A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~----~--------~~~~a~~~~~aGa 115 (310)
+..+...|+|++ ++. ...+.........+.+..+++.+++|+++-.|. | +.+..+.+.+.|+
T Consensus 16 ~~~~~~~~~D~v-ElR-----lD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~ 89 (224)
T PF01487_consen 16 LEEAESSGADAV-ELR-----LDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLERAIRLGP 89 (224)
T ss_dssp HHHHHHTTTSEE-EEE-----GGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHHHHHHHTS
T ss_pred HHHHHhcCCCEE-EEE-----eccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence 444455599987 442 111110001112467777888889999986442 1 1344567777999
Q ss_pred CEEEeCCCCCchhHHHHHHhcCCCCcEEEecC----CH--HH----HHHHHHhCCCEEEEc
Q 021609 116 DYVDESEVLTPADEENHINKHNFRIPFVCGCR----NL--GE----ALRRIREGAAMIRTK 166 (310)
Q Consensus 116 d~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~----t~--~e----a~~~~~~Gad~V~v~ 166 (310)
|+|.+-....+............+..++++.| ++ ++ ..++.+.|+|++++-
T Consensus 90 d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia 150 (224)
T PF01487_consen 90 DYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIA 150 (224)
T ss_dssp SEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEE
T ss_pred CEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 99953322222222222222335567777776 22 22 233456799998864
|
2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A .... |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.89 Score=42.16 Aligned_cols=74 Identities=27% Similarity=0.414 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCcEEEeccCC---ccccc--------ccCCCCCC----CCHHHHHHHHhhcCcceeeccccCcHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV---PADIR--------SQGGVARM----SDPQLIKEIKQSVTIPVMAKARIGHFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~---~~~~~--------~~~G~~~~----~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~ 110 (310)
+.++.++++|+++|...|.. ..+.+ ..+|.+-. ...+.+.++++.+++||+....+...+++..+
T Consensus 173 ~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~s~~da~~~ 252 (300)
T TIGR01037 173 EIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGITSFEDALEF 252 (300)
T ss_pred HHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHH
Confidence 67888999999998433311 00101 11111100 01367888888899999998887777889888
Q ss_pred HHcCCCEEE
Q 021609 111 EAIGIDYVD 119 (310)
Q Consensus 111 ~~aGad~Vi 119 (310)
..+|||.|-
T Consensus 253 l~~GAd~V~ 261 (300)
T TIGR01037 253 LMAGASAVQ 261 (300)
T ss_pred HHcCCCcee
Confidence 889999994
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=91.69 E-value=11 Score=34.82 Aligned_cols=83 Identities=20% Similarity=0.221 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc---HHHHHHHHHcCCCE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH---FVEAQILEAIGIDY 117 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~---~~~a~~~~~aGad~ 117 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++....+. .+.++.+.++|+|+
T Consensus 25 ~l~~~l~~~Gv~gi~v~G-s------tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~ 97 (289)
T cd00951 25 AHVEWLLSYGAAALFAAG-G------TGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADG 97 (289)
T ss_pred HHHHHHHHcCCCEEEECc-C------CcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCE
Confidence 467788999999984431 1 1100112211 2333334443 589998764332 46678889999999
Q ss_pred EE-eCCC---CCchhHHHHHHh
Q 021609 118 VD-ESEV---LTPADEENHINK 135 (310)
Q Consensus 118 Vi-~~~~---~~~~~~~~~i~~ 135 (310)
++ .+.. .+..++.++++.
T Consensus 98 v~~~pP~y~~~~~~~i~~~f~~ 119 (289)
T cd00951 98 ILLLPPYLTEAPQEGLYAHVEA 119 (289)
T ss_pred EEECCCCCCCCCHHHHHHHHHH
Confidence 96 3332 233455555443
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.81 Score=42.58 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcc--c-----------c--c-ccCCCCC----CCCHHHHHHHHhhc--CcceeeccccCc
Q 021609 46 EQARVAEEAGACAVMALERVPA--D-----------I--R-SQGGVAR----MSDPQLIKEIKQSV--TIPVMAKARIGH 103 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~--~-----------~--~-~~~G~~~----~~~~~~i~~i~~~~--~iPv~vk~~~~~ 103 (310)
+.++.++++|+++|+..|..+. . . + ..+|.+- ....+.+.++++.+ ++|++....+..
T Consensus 184 ~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~~ 263 (299)
T cd02940 184 EIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIES 263 (299)
T ss_pred HHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCCC
Confidence 7889999999999864441100 0 0 0 0111111 11257888899988 899999888777
Q ss_pred HHHHHHHHHcCCCEEE
Q 021609 104 FVEAQILEAIGIDYVD 119 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi 119 (310)
.+++..+..+|||.|-
T Consensus 264 ~~da~~~l~aGA~~V~ 279 (299)
T cd02940 264 WEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHcCCChhe
Confidence 8888888889999993
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=91.64 E-value=12 Score=35.18 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=32.1
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+..+- +++|--....+...+.-+||+++++|.-++..+++...-.++++.+
T Consensus 270 ~~~I~-~~~gr~~~~~~~~~~~~~g~~~~~~g~~lt~~g~~~~~d~~~~~~~ 320 (336)
T PRK06256 270 DKEIR-IAGGREVNLRSLQPLGLGGANSVIVGNYLTTVGQPATADLDMIEDL 320 (336)
T ss_pred CCeeE-ecCchhhhchhhHHHHhccCceeeECCcccCCCCChHHHHHHHHHC
Confidence 34443 2434323445554444379999999999999888876555555544
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.4 Score=45.99 Aligned_cols=44 Identities=23% Similarity=0.437 Sum_probs=38.8
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
..+|+.++++++..++||++ .||.+++|+..+.++|+|+|.|..
T Consensus 209 ~~tW~~i~~lr~~~~~Pviv---KgV~~~~dA~~a~~~GvD~I~vsn 252 (364)
T PLN02535 209 SLSWKDIEWLRSITNLPILI---KGVLTREDAIKAVEVGVAGIIVSN 252 (364)
T ss_pred CCCHHHHHHHHhccCCCEEE---ecCCCHHHHHHHHhcCCCEEEEeC
Confidence 34588999999988999973 899999999999999999999863
|
|
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.81 Score=41.31 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCcEEEeccCCccccccc-CCCCCCCCHHHHHHHHhh----cCcceeeccccC-----------cHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQ-GGVARMSDPQLIKEIKQS----VTIPVMAKARIG-----------HFVEAQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~-~G~~~~~~~~~i~~i~~~----~~iPv~vk~~~~-----------~~~~a~~ 109 (310)
+.++.++++|+.++ .++.+ +.+ .+.......+.+.+|+.. .+..+.+.-|.. ..+.++.
T Consensus 89 ~tv~~~~~aG~agi-~IEDq----~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~a 163 (238)
T PF13714_consen 89 RTVRELERAGAAGI-NIEDQ----RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKA 163 (238)
T ss_dssp HHHHHHHHCT-SEE-EEESB----STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEE-Eeecc----ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHH
Confidence 67999999999997 77533 211 222233334566666533 233344443221 1356788
Q ss_pred HHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecC-CHHHHHHHHHhCCCEEEEcC
Q 021609 110 LEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR-NLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~~ea~~~~~~Gad~V~v~g 167 (310)
+.++|||.|......+..++.+..+.. +.++.+-.. ..-....+.++|+..|....
T Consensus 164 Y~eAGAD~ifi~~~~~~~~i~~~~~~~--~~Pl~v~~~~~~~~~~eL~~lGv~~v~~~~ 220 (238)
T PF13714_consen 164 YAEAGADMIFIPGLQSEEEIERIVKAV--DGPLNVNPGPGTLSAEELAELGVKRVSYGN 220 (238)
T ss_dssp HHHTT-SEEEETTSSSHHHHHHHHHHH--SSEEEEETTSSSS-HHHHHHTTESEEEETS
T ss_pred HHHcCCCEEEeCCCCCHHHHHHHHHhc--CCCEEEEcCCCCCCHHHHHHCCCcEEEEcH
Confidence 899999999766555566665555543 344433321 11356667788999887653
|
... |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=91.57 E-value=16 Score=36.40 Aligned_cols=205 Identities=17% Similarity=0.196 Sum_probs=107.4
Q ss_pred HHHHHHHHcCCcEEEecc-CCccc--ccccCCCCCCCCHHHHHHHHhhc-Ccceeecccc----Cc--------HHHHHH
Q 021609 46 EQARVAEEAGACAVMALE-RVPAD--IRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARI----GH--------FVEAQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~--~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~----~~--------~~~a~~ 109 (310)
..|..+.++|...+ +.- ....+ .+.. .....+.++.+++.. +.|+..-.+. ++ ..+++.
T Consensus 39 ~ia~~ld~~G~~si-E~wGGAtfd~~~rfl----~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~ 113 (468)
T PRK12581 39 PVLTILDKIGYYSL-ECWGGATFDACIRFL----NEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISL 113 (468)
T ss_pred HHHHHHHhcCCCEE-EecCCcchhhhhccc----CCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHH
Confidence 46778888998865 331 11001 1111 123347888888765 7777754432 11 123788
Q ss_pred HHHcCCCEEEeCCCCC-ch---hHHHHHHhcCCCCcEEEe-----cCCH----HHHHHHHHhCCCEEEEcCCCCCcchHH
Q 021609 110 LEAIGIDYVDESEVLT-PA---DEENHINKHNFRIPFVCG-----CRNL----GEALRRIREGAAMIRTKGEAGTGNIIE 176 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~-~~---~~~~~i~~~~~~i~~~v~-----~~t~----~ea~~~~~~Gad~V~v~g~~~~~~~~~ 176 (310)
+.+.|+|.+-+.+.+. .. ..++.+++.+......++ .+|. +-++.+.++|++.|.+.=..+.-.
T Consensus 114 a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~--- 190 (468)
T PRK12581 114 SAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILT--- 190 (468)
T ss_pred HHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCCCCCcC---
Confidence 8999999996555543 22 334444444432222222 1222 335566778999887642222111
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE--eCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH--FAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~--iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
|+. ..++++.+++..++|+-+ =..-|. ...+..+++++|||.|=..-.
T Consensus 191 -------------------P~~----------v~~Lv~alk~~~~~pi~~H~Hnt~Gl-A~An~laAieAGad~vD~ai~ 240 (468)
T PRK12581 191 -------------------PKA----------AKELVSGIKAMTNLPLIVHTHATSGI-SQMTYLAAVEAGADRIDTALS 240 (468)
T ss_pred -------------------HHH----------HHHHHHHHHhccCCeEEEEeCCCCcc-HHHHHHHHHHcCCCEEEeecc
Confidence 111 134566666656677642 045676 467777888999987654322
Q ss_pred cc--cCCCHHHHHHHHHHHHhc-----cCChhhhhhhhhhccc
Q 021609 255 VF--KSGDPVKRAQAIVRAVTH-----YSDPEVLAEVSCGLGE 290 (310)
Q Consensus 255 i~--~a~dp~~~a~~l~~~i~~-----~~~~~~~~~~~~~~~~ 290 (310)
=+ ++.||. .+.++..++. ..+.+.+.++++.+..
T Consensus 241 g~g~gagN~~--tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~ 281 (468)
T PRK12581 241 PFSEGTSQPA--TESMYLALKEAGYDITLDETLLEQAANHLRQ 281 (468)
T ss_pred ccCCCcCChh--HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 11 233543 4555555553 2234444455544433
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=91.47 E-value=11 Score=35.79 Aligned_cols=69 Identities=25% Similarity=0.212 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+.|+++.+.||..+..+- .-+. .+.......+.++.+++.+++++.+....-..+.++.+.++|+|..-
T Consensus 91 e~Ak~ak~~Ga~r~c~~a----agr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~yn 159 (335)
T COG0502 91 EAAKKAKAAGATRFCMGA----AGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYN 159 (335)
T ss_pred HHHHHHHHcCCceEEEEE----eccC-CCccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhhee
Confidence 679999999988763331 0010 01111122356666777888998888776567899999999999983
|
|
| >PRK12376 putative translaldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.41 E-value=11 Score=34.10 Aligned_cols=175 Identities=13% Similarity=0.115 Sum_probs=98.3
Q ss_pred ccccCCCHHHHHHHHHcC-CcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC----cHHHHHHHH
Q 021609 38 VIMDVVTPEQARVAEEAG-ACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG----HFVEAQILE 111 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~G-a~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~----~~~~a~~~~ 111 (310)
++.|-.|.+..+.+.+.| .+++ --||. ..+..++. ...+.++++++.. +-||.+..... ..++++.+.
T Consensus 8 ~flDtAd~~eik~~~~~g~i~GV-TTNPs--ll~k~g~~---~~~~~~~~i~~~~~~~~vs~EV~~~d~~~mv~eA~~l~ 81 (236)
T PRK12376 8 IFADGADLEEMLAAYKNPLVKGF-TTNPS--LMRKAGVT---DYKAFAKEVLAEIPDAPISFEVFADDLETMEKEAEKIA 81 (236)
T ss_pred EEEecCCHHHHHHHHhCCCeeEE-ECCHH--HHHhcCCC---CHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHH
Confidence 455667788888888877 4554 44433 22222211 1246777777766 35777654322 235667777
Q ss_pred HcCCCEEE-eCCCC----CchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHh----CCCEEEEc-CCCCCcchHHHHHH
Q 021609 112 AIGIDYVD-ESEVL----TPADEENHINKHNFRIPFVC-GCRNLGEALRRIRE----GAAMIRTK-GEAGTGNIIEAVRH 180 (310)
Q Consensus 112 ~aGad~Vi-~~~~~----~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~----Gad~V~v~-g~~~~~~~~~~~~~ 180 (310)
+.+-+.++ ++... +--...+.+.+. |+.+.+ -+-+...+..+.++ |++|+... ||..
T Consensus 82 ~~~~nv~VKIP~T~~~G~~gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~a~~A~ag~ga~yispfvgR~d---------- 149 (236)
T PRK12376 82 SLGENVYVKIPITNTKGESTIPLIKKLSAD--GVKLNVTAIFTIEQVKEVVDALTPGVPAIVSVFAGRIA---------- 149 (236)
T ss_pred HhCCCeEEEECCcCccchhHHHHHHHHHHC--CCeEEEeeecCHHHHHHHHHHhcCCCCeEEEEecchhh----------
Confidence 77766555 44321 112334444443 444333 37788888755544 58998865 2210
Q ss_pred HHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh----hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK----QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~----~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
... ..+...++++. ...+.-|+ ..-++++.++.++..+|||.+-+.-.++
T Consensus 150 ------------d~g-----------~D~~~~i~~i~~i~~~~~~tkIL---aASiR~~~~v~~a~~~Gad~vTvp~~v~ 203 (236)
T PRK12376 150 ------------DTG-----------VDPVPLMKEALAICHSKPGVELL---WASPREVYNIIQADQLGCDIITVTPDVL 203 (236)
T ss_pred ------------hcC-----------CCcHHHHHHHHHHHHhCCCcEEE---EEecCCHHHHHHHHHcCCCEEEcCHHHH
Confidence 001 11233333332 22344565 3689999999999999999998664443
|
|
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.39 E-value=7.7 Score=34.38 Aligned_cols=111 Identities=20% Similarity=0.086 Sum_probs=66.5
Q ss_pred HHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc--HHHHHHHHHcCCCEEEeC---
Q 021609 47 QARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH--FVEAQILEAIGIDYVDES--- 121 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~--~~~a~~~~~aGad~Vi~~--- 121 (310)
.++.+.++||+++..++-.+ ..+...+.+..+.++.-+.+.+.-.+ .+.++.+.++|+|.++.+
T Consensus 72 e~~ma~~aGAd~~tV~g~A~-----------~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 72 EARMAFEAGADWVTVLGAAD-----------DATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred HHHHHHHcCCCEEEEEecCC-----------HHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecc
Confidence 57888899999984442110 11123333445567877777654332 345566777999999521
Q ss_pred C----CCCc-hhHHHHHHh-cCCCCc-EEEecCCHHHHHHHHHhCCCEEEEcCC
Q 021609 122 E----VLTP-ADEENHINK-HNFRIP-FVCGCRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 122 ~----~~~~-~~~~~~i~~-~~~~i~-~~v~~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
+ ..++ .+..+.+++ ...+.. .+.+--+++++......|++++.+.+.
T Consensus 141 D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~~~~~~ivIvGra 194 (217)
T COG0269 141 DAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFKGIGADIVIVGRA 194 (217)
T ss_pred cHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHhcCCCCEEEECch
Confidence 2 2344 344444444 344433 344456888888888999999887543
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=91.32 E-value=2.8 Score=37.07 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=56.2
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-----CCC----chhHHHHHHhcCCC-CcEEEecCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE-----VLT----PADEENHINKHNFR-IPFVCGCRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~-----~~~----~~~~~~~i~~~~~~-i~~~v~~~t~ 149 (310)
.+.++++++. ++++.+..-+. ..++..+.++||++|- ... ... ..++.++++.++.. ....+++++.
T Consensus 91 l~ai~~L~~~-gi~v~~T~V~s-~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~ 168 (211)
T cd00956 91 LKAIKKLSEE-GIKTNVTAIFS-AAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNP 168 (211)
T ss_pred HHHHHHHHHc-CCceeeEEecC-HHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCH
Confidence 5666666654 66666554333 4678888999999973 111 112 22445555544444 3477789999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 021609 150 GEALRRIREGAAMIRTK 166 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~ 166 (310)
.++..+..+|+|++++.
T Consensus 169 ~ei~~a~~~Gad~vTv~ 185 (211)
T cd00956 169 QHVIEAALAGADAITLP 185 (211)
T ss_pred HHHHHHHHcCCCEEEeC
Confidence 99999999999999875
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=91.19 E-value=1 Score=38.36 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
...++++.+.+++|++ |+|=|.+.+++.+++++||-+|-
T Consensus 133 Pkvi~~i~~~t~~piI--AGGLi~t~Eev~~Al~aGA~avS 171 (181)
T COG1954 133 PKVIKEITEKTHIPII--AGGLIETEEEVREALKAGAVAVS 171 (181)
T ss_pred HHHHHHHHHhcCCCEE--eccccccHHHHHHHHHhCcEEEe
Confidence 3467788888899998 78889999999999999998875
|
|
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.18 E-value=5.5 Score=36.40 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=36.0
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
.+.++.+++.+..+.+. +|.+ ++ . ...++++++++++.+ ++.||.+|-..
T Consensus 84 vvTeV~~~~~~~~v~~~-~Dil-QI-------g----Arn~rn~~LL~a~g~-t~kpV~lKrG~ 133 (264)
T PRK05198 84 VLTDVHEPEQAAPVAEV-VDVL-QI-------P----AFLCRQTDLLVAAAK-TGKVVNIKKGQ 133 (264)
T ss_pred eEEEeCCHHHHHHHHhh-CcEE-EE-------C----chhcchHHHHHHHhc-cCCeEEecCCC
Confidence 46677788888888887 8865 54 2 234677889888764 68999998543
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.9 Score=45.52 Aligned_cols=42 Identities=21% Similarity=0.113 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.+.++++++..+.++.+ ..|-|-|++++..++++|||++.||
T Consensus 271 ~~~i~~ir~~~~~~~~V-~aGnV~t~e~a~~li~aGAd~I~vg 312 (502)
T PRK07107 271 KRTLDWIREKYGDSVKV-GAGNVVDREGFRYLAEAGADFVKVG 312 (502)
T ss_pred HHHHHHHHHhCCCCceE-EeccccCHHHHHHHHHcCCCEEEEC
Confidence 45566776653322332 3689999999999999999999883
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.02 E-value=3.7 Score=37.46 Aligned_cols=85 Identities=15% Similarity=0.256 Sum_probs=57.2
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc-CC-------hhh
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY-SD-------PEV 280 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~-~~-------~~~ 280 (310)
.++.+..+++.+++||+. -. =|.++.++.++..+|||+|.+.-.++. + ...+++++..++. ++ .+.
T Consensus 99 ~~~~l~~v~~~v~iPvl~-kd-fi~~~~qi~~a~~~GAD~VlLi~~~l~---~-~~l~~li~~a~~lGl~~lvevh~~~E 172 (260)
T PRK00278 99 SLEYLRAARAAVSLPVLR-KD-FIIDPYQIYEARAAGADAILLIVAALD---D-EQLKELLDYAHSLGLDVLVEVHDEEE 172 (260)
T ss_pred CHHHHHHHHHhcCCCEEe-ee-ecCCHHHHHHHHHcCCCEEEEEeccCC---H-HHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 466788888888999985 23 356788999999999999999988874 3 3455565555542 22 222
Q ss_pred hhhhhhhcccchhcccCccc
Q 021609 281 LAEVSCGLGEAMVGLNLSDH 300 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~ 300 (310)
+. ....+|....|+|-+|.
T Consensus 173 ~~-~A~~~gadiIgin~rdl 191 (260)
T PRK00278 173 LE-RALKLGAPLIGINNRNL 191 (260)
T ss_pred HH-HHHHcCCCEEEECCCCc
Confidence 22 23456888888775443
|
|
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=90.99 E-value=5.8 Score=36.09 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=35.5
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
.+.++-+++.+..+.+. +|.+ ++ . ...++++++++++.+ ++.||.+|-..
T Consensus 76 vvTeV~~~~~~~~vae~-vDil-QI-------g----Arn~rn~~LL~a~g~-t~kpV~lKrG~ 125 (258)
T TIGR01362 76 ILTDVHESSQCEPVAEV-VDII-QI-------P----AFLCRQTDLLVAAAK-TGRIVNVKKGQ 125 (258)
T ss_pred eEEEeCCHHHHHHHHhh-CcEE-Ee-------C----chhcchHHHHHHHhc-cCCeEEecCCC
Confidence 46677778888888777 7855 54 2 234677888888764 68999998543
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=6.6 Score=38.78 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=30.0
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
+..+..+++. .++|+.+--.-.|.+...+..+.+.|++.|.+.+-+.
T Consensus 98 ~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELs 145 (443)
T PRK15452 98 PGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELS 145 (443)
T ss_pred HHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCC
Confidence 3344444443 3567764234466777777777788888888877664
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.65 Score=43.90 Aligned_cols=87 Identities=31% Similarity=0.365 Sum_probs=55.0
Q ss_pred cchhhhhhC-c--ccccCCCHHHHHHHHHcCCcEEEeccCCcccccccC--CCCCCCCHHHHHHHHhhcCcceeeccccC
Q 021609 28 VGLAQMLRG-G--VIMDVVTPEQARVAEEAGACAVMALERVPADIRSQG--GVARMSDPQLIKEIKQSVTIPVMAKARIG 102 (310)
Q Consensus 28 ~~~~~~~~~-g--~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~--G~~~~~~~~~i~~i~~~~~iPv~vk~~~~ 102 (310)
.+.++.++. | ++..+++.+.|+.+++.|+|.|+.-. ..+.| |........++.++++.+++||++-..+.
T Consensus 126 ~~~i~~l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG-----~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~ 200 (330)
T PF03060_consen 126 PEVIERLHAAGIKVIPQVTSVREARKAAKAGADAIVAQG-----PEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIA 200 (330)
T ss_dssp HHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE------TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--
T ss_pred HHHHHHHHHcCCccccccCCHHHHHHhhhcCCCEEEEec-----cccCCCCCccccceeeHHHHHhhhcCCcEEEecCcC
Confidence 344554442 3 46677899999999999999984211 11111 21111246788889999999999988887
Q ss_pred cHHHHHHHHHcCCCEEE
Q 021609 103 HFVEAQILEAIGIDYVD 119 (310)
Q Consensus 103 ~~~~a~~~~~aGad~Vi 119 (310)
+...+..+...|||+|.
T Consensus 201 dg~~iaaal~lGA~gV~ 217 (330)
T PF03060_consen 201 DGRGIAAALALGADGVQ 217 (330)
T ss_dssp SHHHHHHHHHCT-SEEE
T ss_pred CHHHHHHHHHcCCCEee
Confidence 77778899999999995
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=90.75 E-value=16 Score=34.92 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=104.5
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC-cHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG-HFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~-~~~~a~~~~~aG 114 (310)
++.+.++ .+++++.++.-|+++.+. ..+. .|. ......++...+.. .+||.+.+--+ .++.+..+.++|
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~s~~--~~~~-~g~--~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~G 98 (347)
T PRK09196 24 NVNNLEQVQAIMEAADETDSPVILQASAG--ARKY-AGE--PFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLG 98 (347)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECCcc--Hhhh-CCH--HHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 4455554 445577788866666321 1111 111 00123444445555 49999875333 567888999999
Q ss_pred CCEEE--eCCC------CCch-------hHHHHHHhcCCCCc--E--E-----------------------EecCCHHHH
Q 021609 115 IDYVD--ESEV------LTPA-------DEENHINKHNFRIP--F--V-----------------------CGCRNLGEA 152 (310)
Q Consensus 115 ad~Vi--~~~~------~~~~-------~~~~~i~~~~~~i~--~--~-----------------------v~~~t~~ea 152 (310)
.+-|- .+.. ++.+ ++.++....+..+. + + .-.+++++|
T Consensus 99 ftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA 178 (347)
T PRK09196 99 FTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEA 178 (347)
T ss_pred CCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHH
Confidence 99993 4432 0222 23333322221100 0 0 003567888
Q ss_pred HHHH-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeeccc-ChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCC
Q 021609 153 LRRI-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM-DDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAA 229 (310)
Q Consensus 153 ~~~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~-~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~ 229 (310)
.+-. +.|+|.+.+.-.+ -+ ..++.. .+ +...-+++.+++|++.+ ++|++.=.+
T Consensus 179 ~~Fv~~TgvD~LAvaiGT--~H---------------G~Yk~~~~p-------~~~~LdfdrL~eI~~~v~~vPLVLHGg 234 (347)
T PRK09196 179 ADFVKKTQVDALAIAIGT--SH---------------GAYKFTRKP-------TGDVLAIDRIKEIHARLPNTHLVMHGS 234 (347)
T ss_pred HHHHHHhCcCeEhhhhcc--cc---------------CCCCCCCCC-------ChhhccHHHHHHHHhcCCCCCEEEeCC
Confidence 8865 5688887654211 01 011100 00 00113578899998887 799875444
Q ss_pred CCCC--------------------CHHHHHHHHHcCCCEEEEcccccc
Q 021609 230 GGVA--------------------TPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 230 GGI~--------------------t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.|+. ..+++.++.+.|..=|=++|.+..
T Consensus 235 SG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~ 282 (347)
T PRK09196 235 SSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRL 282 (347)
T ss_pred CCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHH
Confidence 4441 358899999999999999998874
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=90.71 E-value=4 Score=33.29 Aligned_cols=53 Identities=25% Similarity=0.390 Sum_probs=33.0
Q ss_pred HHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 212 LVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 212 ~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+++.+++.. +++++ + ||....++..++.++|.|++. ....++...++.+.+.+
T Consensus 73 ~~~~L~~~g~~~i~vi--v-GG~~~~~~~~~l~~~Gvd~~~-----~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 73 LRKELDKLGRPDILVV--V-GGVIPPQDFDELKEMGVAEIF-----GPGTPIPESAIFLLKKL 127 (132)
T ss_pred HHHHHHhcCCCCCEEE--E-eCCCChHhHHHHHHCCCCEEE-----CCCCCHHHHHHHHHHHH
Confidence 444455432 45665 3 665467789998899999986 22235666666665544
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.4 Score=44.51 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=47.0
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc----ccccCCCHHHHHHHHHHHHhc
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS----GVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs----ai~~a~dp~~~a~~l~~~i~~ 274 (310)
-.|+.+++++..+++|+++ -||-+.+|+..+.+.|++|++|.. -+=..+-+-....+++.+++.
T Consensus 210 l~W~Di~wLr~~T~LPIvv---KGilt~eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ 277 (363)
T KOG0538|consen 210 LSWKDIKWLRSITKLPIVV---KGVLTGEDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEG 277 (363)
T ss_pred CChhhhHHHHhcCcCCeEE---EeecccHHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcC
Confidence 3488899999999999984 799999999999999999999964 222222233444455666553
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=90.53 E-value=4.7 Score=35.66 Aligned_cols=75 Identities=33% Similarity=0.399 Sum_probs=51.8
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC---CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCC
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVAR---MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGI 115 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~---~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGa 115 (310)
+..+.+.+.++.+.+.|++.+ .+.+. ..+|... ....+.++++++.+++|+++...+...+++..+.+.|+
T Consensus 106 i~~v~~~~~~~~~~~~gad~i-~~~~~-----~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~Ga 179 (236)
T cd04730 106 IPTVTSVEEARKAEAAGADAL-VAQGA-----EAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGA 179 (236)
T ss_pred EEeCCCHHHHHHHHHcCCCEE-EEeCc-----CCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCC
Confidence 344556678888888999987 33211 0011111 12357888888888999999877776677888889999
Q ss_pred CEEE
Q 021609 116 DYVD 119 (310)
Q Consensus 116 d~Vi 119 (310)
|+|.
T Consensus 180 dgV~ 183 (236)
T cd04730 180 DGVQ 183 (236)
T ss_pred cEEE
Confidence 9996
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=90.48 E-value=2.3 Score=38.77 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=55.6
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc--------CChhh
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY--------SDPEV 280 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~--------~~~~~ 280 (310)
.++.+..+++.+++|++. -==|-++-++.++..+|||+|++--+++. + ...++|.+..++. .+++.
T Consensus 97 s~~dL~~v~~~~~~PvL~--KDFIid~~QI~eA~~~GADaVLLI~~~L~---~-~~l~~l~~~a~~lGle~lVEVh~~~E 170 (254)
T PF00218_consen 97 SLEDLRAVRKAVDLPVLR--KDFIIDPYQIYEARAAGADAVLLIAAILS---D-DQLEELLELAHSLGLEALVEVHNEEE 170 (254)
T ss_dssp HHHHHHHHHHHSSS-EEE--ES---SHHHHHHHHHTT-SEEEEEGGGSG---H-HHHHHHHHHHHHTT-EEEEEESSHHH
T ss_pred CHHHHHHHHHHhCCCccc--ccCCCCHHHHHHHHHcCCCEeehhHHhCC---H-HHHHHHHHHHHHcCCCeEEEECCHHH
Confidence 356677788778899986 12244899999999999999999999995 3 3344555554432 22333
Q ss_pred hhhhhhhcccchhcccCccch
Q 021609 281 LAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ 301 (310)
+. .....|..+.|+|-+|++
T Consensus 171 l~-~al~~~a~iiGINnRdL~ 190 (254)
T PF00218_consen 171 LE-RALEAGADIIGINNRDLK 190 (254)
T ss_dssp HH-HHHHTT-SEEEEESBCTT
T ss_pred HH-HHHHcCCCEEEEeCcccc
Confidence 32 233668999999988764
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.38 E-value=1.1 Score=42.19 Aligned_cols=80 Identities=34% Similarity=0.357 Sum_probs=54.5
Q ss_pred CHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHH-cCCCEEE-
Q 021609 44 TPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEA-IGIDYVD- 119 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~-aGad~Vi- 119 (310)
..+.++.++++|++++ ++-. . +...+. ..-+.+.|.++++.+. +||+.+..+...++++.+.+ .|+|+|.
T Consensus 154 ~~~ia~~~~~~g~~~ltVHgR-t----r~~~y~-~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMi 227 (323)
T COG0042 154 ALEIARILEDAGADALTVHGR-T----RAQGYL-GPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMI 227 (323)
T ss_pred HHHHHHHHHhcCCCEEEEecc-c----HHhcCC-CccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEE
Confidence 4579999999999998 3321 1 111111 1135789999999988 99999987777778866655 8899995
Q ss_pred eCCCCCchhH
Q 021609 120 ESEVLTPADE 129 (310)
Q Consensus 120 ~~~~~~~~~~ 129 (310)
+-..+..+.+
T Consensus 228 gRga~~nP~l 237 (323)
T COG0042 228 GRGALGNPWL 237 (323)
T ss_pred cHHHccCCcH
Confidence 3333444433
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.35 E-value=14 Score=33.87 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=26.2
Q ss_pred HHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 81 PQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 81 ~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.+.++.+++.. ++.+.+.......+.++.+.++|+|.+.
T Consensus 78 ~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 78 AEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEc
Confidence 35666666654 5555444433356888999999999994
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=90.19 E-value=2.1 Score=38.23 Aligned_cols=48 Identities=17% Similarity=0.262 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE-eCCCC
Q 021609 77 RMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVL 124 (310)
Q Consensus 77 ~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~ 124 (310)
...+++.++++++.+ ++|+.+...+...++++.+.++|||.|+ ++...
T Consensus 163 ~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~ 212 (223)
T TIGR01768 163 EPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIVTGNVIE 212 (223)
T ss_pred CCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHh
Confidence 345688999999988 9999998888788999999999999996 44443
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=90.19 E-value=1.9 Score=38.37 Aligned_cols=68 Identities=19% Similarity=0.264 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~ 120 (310)
+....+.+.|+ +++.++ +.. -|+....+++.++++++.+++|+++...++..++++.+.+.|+|+++.
T Consensus 145 ~~~~~~~~~g~-~ii~td-----I~~-dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 145 EVRDFLNSFDY-GLIVLD-----IHS-VGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred HHHHHHHhcCC-EEEEEE-----CCc-cccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 45666677887 653332 221 134345578999999999999999998888888888899999999963
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form | Back alignment and domain information |
|---|
Probab=90.04 E-value=8.1 Score=35.43 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=64.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc---C---cHHHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI---G---HFVEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~---~---~~~~a~~~~~aGad~Vi 119 (310)
+.++.+.+.|++.+ .+- ...+|...+.+....+.+++..++|.+....- + .......+.++|++-|+
T Consensus 19 ~~~~~l~~~~pd~i-svT------~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL 91 (272)
T TIGR00676 19 ETVDRLSPLDPDFV-SVT------YGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHIL 91 (272)
T ss_pred HHHHHHhcCCCCEE-Eec------cCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEE
Confidence 45777888889987 331 11123334555677788887788887775322 1 13445667889999885
Q ss_pred -eC-CCC------------CchhHHHHHHhcCCCCcEEEec--------CCH-HH---HHHHHHhCCCEEEEc
Q 021609 120 -ES-EVL------------TPADEENHINKHNFRIPFVCGC--------RNL-GE---ALRRIREGAAMIRTK 166 (310)
Q Consensus 120 -~~-~~~------------~~~~~~~~i~~~~~~i~~~v~~--------~t~-~e---a~~~~~~Gad~V~v~ 166 (310)
.. |.. ...++++.+++...++.+++.+ .+. ++ .++..++|++++.+.
T Consensus 92 ~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ 164 (272)
T TIGR00676 92 ALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQ 164 (272)
T ss_pred EeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeec
Confidence 22 111 1235566665533344444443 222 22 223456788887665
|
This protein is an FAD-containing flavoprotein. |
| >COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.88 E-value=17 Score=33.86 Aligned_cols=45 Identities=24% Similarity=0.507 Sum_probs=29.4
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH---HcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 221 RLPVVHFAAGGVATPADAAMMM---QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l---~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
+..++ .|+.+.++++-++ +.|+|||++- ++||... +.+.+.+++.
T Consensus 145 ~~kli----A~V~saeEA~vA~eTLE~GaDgVll~-----~~d~~eI-k~~~~~~~e~ 192 (376)
T COG1465 145 KVKLI----AGVKSAEEARVALETLEKGADGVLLD-----SDDPEEI-KKTAEVVEEA 192 (376)
T ss_pred ceEEE----EEeccHHHHHHHHHHHhccCceEEeC-----CCCHHHH-HHHHHHHHHh
Confidence 34555 5888998887766 5799999865 4577543 3344444443
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=89.77 E-value=16 Score=33.38 Aligned_cols=64 Identities=22% Similarity=0.269 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCCEEEeCC--CC------CchhH------HHHHHhcCCCCcEEEec--CCHHHHHH-HHHhCCCEEEEcC
Q 021609 105 VEAQILEAIGIDYVDESE--VL------TPADE------ENHINKHNFRIPFVCGC--RNLGEALR-RIREGAAMIRTKG 167 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~--~~------~~~~~------~~~i~~~~~~i~~~v~~--~t~~ea~~-~~~~Gad~V~v~g 167 (310)
.+++.+++.|+|+|+..+ +. .++.. ...+++ ..++++++.+ ++..++.. +...|+++|.+..
T Consensus 33 ~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~-~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~~ 111 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRR-EVSVPVGVNVLRNDPKAALAIAAATGADFIRVNV 111 (254)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHH-hCCCCEEeeeecCCCHHHHHHHHHhCCCEEEecC
Confidence 578999999999997332 11 22221 122222 3467777774 35555555 4467999999775
Q ss_pred CC
Q 021609 168 EA 169 (310)
Q Consensus 168 ~~ 169 (310)
+.
T Consensus 112 ~~ 113 (254)
T PF03437_consen 112 FV 113 (254)
T ss_pred EE
Confidence 53
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=89.60 E-value=2 Score=39.23 Aligned_cols=91 Identities=11% Similarity=0.053 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCC---CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVAR---MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~---~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~ 122 (310)
+.|+.+.+.||+.| +++...+......-+.. .+....++.+++.+++|+.+... ..+.++.+.++|++.+--..
T Consensus 27 ~~a~~~~~~GA~iI-DIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~--~~~vi~~al~~G~~iINsis 103 (257)
T TIGR01496 27 AHAERMLEEGADII-DVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTY--RAEVARAALEAGADIINDVS 103 (257)
T ss_pred HHHHHHHHCCCCEE-EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCC--CHHHHHHHHHcCCCEEEECC
Confidence 57888899999976 87622111110000000 00112334445556899887665 33677888889999884222
Q ss_pred CCCchhHHHHHHhcCCC
Q 021609 123 VLTPADEENHINKHNFR 139 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~ 139 (310)
.....+..+.+++++..
T Consensus 104 ~~~~~~~~~l~~~~~~~ 120 (257)
T TIGR01496 104 GGQDPAMLEVAAEYGVP 120 (257)
T ss_pred CCCCchhHHHHHHcCCc
Confidence 22244555666554433
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >PLN02561 triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=89.59 E-value=7.7 Score=35.36 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=27.9
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEcccccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~ 257 (310)
++||+ -+|+| +++++.+++ ..++||++||++=++
T Consensus 204 ~i~IL--YGGSV-~~~N~~~l~~~~~iDG~LVG~ASL~ 238 (253)
T PLN02561 204 TTRII--YGGSV-TGANCKELAAQPDVDGFLVGGASLK 238 (253)
T ss_pred cceEE--EeCCc-CHHHHHHHhcCCCCCeEEEehHhhH
Confidence 57888 47888 588877776 679999999999885
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=89.55 E-value=3.4 Score=38.31 Aligned_cols=120 Identities=17% Similarity=0.154 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccCCC---CCCCCHHHHHHHHh---h-c--Ccceeec-cc-c---Cc---HHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQGGV---ARMSDPQLIKEIKQ---S-V--TIPVMAK-AR-I---GH---FVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~G~---~~~~~~~~i~~i~~---~-~--~iPv~vk-~~-~---~~---~~~ 106 (310)
..++.++++|+.++ .++.+ |+.-...++. ......+.+++|+. + . +++|++. +. . +. .+.
T Consensus 96 r~V~~l~~aGvaGi-~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~R 174 (285)
T TIGR02320 96 RLVRKLERRGVSAV-CIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKR 174 (285)
T ss_pred HHHHHHHHcCCeEE-EEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHH
Confidence 46889999999997 66532 2211111211 12233345555543 2 2 3455554 11 1 11 356
Q ss_pred HHHHHHcCCCEEEeCC-CCCchhHHHHHHhcC---CCCcEEEecC--CHHHHHHHHHhCCCEEEEc
Q 021609 107 AQILEAIGIDYVDESE-VLTPADEENHINKHN---FRIPFVCGCR--NLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~-~~~~~~~~~~i~~~~---~~i~~~v~~~--t~~ea~~~~~~Gad~V~v~ 166 (310)
++.+.++|||.|.... ..+..++.++.+... +.+++++-.. .......+.++|+..|...
T Consensus 175 a~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~ 240 (285)
T TIGR02320 175 AEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYA 240 (285)
T ss_pred HHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEh
Confidence 7889999999997553 345666666665522 2334433111 1113556778899988753
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.84 Score=43.36 Aligned_cols=88 Identities=33% Similarity=0.357 Sum_probs=63.0
Q ss_pred ecchhhhhhC---cccccCCCHHHHHHHHHcCCcEEEeccCCcccccccC--CC--CCCCCHHHHHHHHhhcC-cceeec
Q 021609 27 KVGLAQMLRG---GVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQG--GV--ARMSDPQLIKEIKQSVT-IPVMAK 98 (310)
Q Consensus 27 ~~~~~~~~~~---g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~--G~--~~~~~~~~i~~i~~~~~-iPv~vk 98 (310)
-.+.++.++. -.+..+.+...|+++++.|+|.++.-. ..+.| |. .......++.++++.++ +||++-
T Consensus 116 ~~~~i~~~~~~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g-----~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAA 190 (336)
T COG2070 116 PAEFVARLKAAGIKVIHSVITVREALKAERAGADAVIAQG-----AEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAA 190 (336)
T ss_pred cHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEecC-----CcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEe
Confidence 3445554442 356677888999999999999884321 01111 21 12334678999999999 999998
Q ss_pred cccCcHHHHHHHHHcCCCEEE
Q 021609 99 ARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi 119 (310)
..+.+...+..++..||++|-
T Consensus 191 GGI~dg~~i~AAlalGA~gVq 211 (336)
T COG2070 191 GGIADGRGIAAALALGADGVQ 211 (336)
T ss_pred cCccChHHHHHHHHhccHHHH
Confidence 888777888999999999993
|
|
| >cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD | Back alignment and domain information |
|---|
Probab=89.37 E-value=3.3 Score=37.93 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=28.1
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+++||| +++.+......|.|.+.+|+.++..
T Consensus 243 ~~Sggi-~~~~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 243 EASGGL-DEENIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred EEeCCC-CHHHHHHHHHcCCCEEEeCcccccC
Confidence 389999 5999999999999999999999974
|
QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway. |
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=20 Score=34.16 Aligned_cols=58 Identities=7% Similarity=0.068 Sum_probs=43.9
Q ss_pred cHHHHHHHhhcC---------CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 209 PYDLVMQTKQLG---------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 209 ~~~~i~~i~~~~---------~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+++.++.+++.+ ++|+++=.+.|+ +.++++++.+.|..=|=++|.+.. ...+.+.+.+
T Consensus 228 d~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGi-pde~i~~ai~~GI~KINi~T~l~~-----a~~~~~~~~~ 294 (350)
T PRK09197 228 RPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGS-TLEEIREAVSYGVVKMNIDTDTQW-----AFWRGVLDYY 294 (350)
T ss_pred CHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCC-CHHHHHHHHHCCCeeEEeCcHHHH-----HHHHHHHHHH
Confidence 577888887766 799886556676 469999999999999999998874 3444455544
|
|
| >PRK13384 delta-aminolevulinic acid dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.33 E-value=19 Score=33.77 Aligned_cols=96 Identities=13% Similarity=0.209 Sum_probs=47.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC-CC---CCHHHHHHHHhhc-Ccceeec----------------c-ccCc
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA-RM---SDPQLIKEIKQSV-TIPVMAK----------------A-RIGH 103 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~---~~~~~i~~i~~~~-~iPv~vk----------------~-~~~~ 103 (310)
+.++.+.+.|..+++.. +.|..... .|+. .. ...+.++.+|+.+ ++-|+.. . .+..
T Consensus 65 ~~~~~~~~~Gi~~v~lF-gv~~~Kd~-~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc~YT~hGHcGil~~g~i~N 142 (322)
T PRK13384 65 DEIERLYALGIRYVMPF-GISHHKDA-KGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFCEYTDHGHCGVLHNDEVDN 142 (322)
T ss_pred HHHHHHHHcCCCEEEEe-CCCCCCCC-CcccccCCCChHHHHHHHHHHHCCCeEEEeeeecccCCCCCceeeccCCcCcc
Confidence 56788889999987322 22222222 2222 11 1245677777765 4334332 0 1111
Q ss_pred HH-------HHHHHHHcCCCEEEeCCCCC--chhHHHHHHhcCCC-CcEE
Q 021609 104 FV-------EAQILEAIGIDYVDESEVLT--PADEENHINKHNFR-IPFV 143 (310)
Q Consensus 104 ~~-------~a~~~~~aGad~Vi~~~~~~--~~~~~~~i~~~~~~-i~~~ 143 (310)
.+ .+-...++|||.|--++-+. ...+++.+...++. +.++
T Consensus 143 D~Tl~~L~~~Als~A~AGADiVAPSdMMDGrV~aIR~aLd~~g~~~v~Im 192 (322)
T PRK13384 143 DATVENLVKQSVTAAKAGADMLAPSAMMDGQVKAIRQGLDAAGFEHVAIL 192 (322)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEecccccccHHHHHHHHHHHCCCCCCcee
Confidence 22 22333459999996444333 33455556555553 4443
|
|
| >cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria | Back alignment and domain information |
|---|
Probab=89.29 E-value=23 Score=34.61 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=43.2
Q ss_pred CCEEEeCCCCCCCHHHHHHHH-HcC-CCEEEE-ccccccCC-CHHHHHHHHHHHHhccCChh
Q 021609 222 LPVVHFAAGGVATPADAAMMM-QLG-CDGVFV-GSGVFKSG-DPVKRAQAIVRAVTHYSDPE 279 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l-~~G-adgV~V-Gsai~~a~-dp~~~a~~l~~~i~~~~~~~ 279 (310)
.|+ .+||+ ++..+.+++ ..| -|-++. |..++.++ .|..-+++++++++.+.+..
T Consensus 333 ~Pv---~sgG~-~~~~vp~~~~~~G~~Dvi~~aGGGi~gHP~G~~aGa~A~rqA~ea~~~G~ 390 (406)
T cd08207 333 MPV---FSSGQ-WGGQAPPTYRRLGSVDLLYLAGGGIMAHPDGPAAGVRSLRQAWEAAVAGV 390 (406)
T ss_pred eEe---ccCCC-CHhHHHHHHHHhCCCceEEecCCceecCCCCchhHHHHHHHHHHHHHcCC
Confidence 577 69999 699999998 578 576655 99999964 67788889999998876543
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=89.20 E-value=7.5 Score=32.89 Aligned_cols=115 Identities=20% Similarity=0.168 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh--cCcceeeccccC---cHHH----HHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS--VTIPVMAKARIG---HFVE----AQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~--~~iPv~vk~~~~---~~~~----a~~~~~aGad 116 (310)
+.++.+.+.||+++...-|. .... .+. .....+.++++++. .++|+++..... ..+. ++.+.+.|++
T Consensus 69 ~~a~~a~~~Gad~i~v~~~~--~~~~-~~~-~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~ 144 (201)
T cd00945 69 AEVEEAIDLGADEIDVVINI--GSLK-EGD-WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGAD 144 (201)
T ss_pred HHHHHHHHcCCCEEEEeccH--HHHh-CCC-HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 67899999999998322110 0000 000 00114667777777 489999865432 1122 2345679999
Q ss_pred EEEeCCC-----CCchhHHHHHHhcCCC--CcEEEecCCHHHHHHHHHhCCCEEE
Q 021609 117 YVDESEV-----LTPADEENHINKHNFR--IPFVCGCRNLGEALRRIREGAAMIR 164 (310)
Q Consensus 117 ~Vi~~~~-----~~~~~~~~~i~~~~~~--i~~~v~~~t~~ea~~~~~~Gad~V~ 164 (310)
+|-.+.. .....+....+....+ +.+..+..+.+.+..+...|++.+.
T Consensus 145 ~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~ 199 (201)
T cd00945 145 FIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIG 199 (201)
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceee
Confidence 9942222 1334444433333223 3334445567888888888888764
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK08662 nicotinate phosphoribosyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=89.04 E-value=5 Score=38.20 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=27.3
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.++||| +++++.++.++ +|.+.||+.++.+
T Consensus 265 eaSGgI-~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 265 FVSGGL-DPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred EEeCCC-CHHHHHHHHHh-CCEEEcCccccCC
Confidence 389999 79999999999 9999999999974
|
|
| >PRK09283 delta-aminolevulinic acid dehydratase; Validated | Back alignment and domain information |
|---|
Probab=89.02 E-value=20 Score=33.67 Aligned_cols=91 Identities=23% Similarity=0.253 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC-CC---CCHHHHHHHHhhc-Ccceeecc-----------------ccCc
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA-RM---SDPQLIKEIKQSV-TIPVMAKA-----------------RIGH 103 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~---~~~~~i~~i~~~~-~iPv~vk~-----------------~~~~ 103 (310)
+.++.+.+.|..++ .|=+.|..... .|+. .. .....++.+|+.+ ++-++... .+..
T Consensus 63 ~~v~~~~~~Gi~av-~LFgv~~~Kd~-~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc~YT~hGHcGil~~g~idN 140 (323)
T PRK09283 63 KEAEEAVELGIPAV-ALFGVPELKDE-DGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLDEYTSHGHCGILEDGYVDN 140 (323)
T ss_pred HHHHHHHHCCCCEE-EEeCcCCCCCc-ccccccCCCCHHHHHHHHHHHhCCCcEEEEeeeccCCCCCCceecccCCcCcC
Confidence 56888899999987 22222222222 2222 11 1235677777765 44444320 0111
Q ss_pred H-------HHHHHHHHcCCCEEEeCCCCC--chhHHHHHHhcCC
Q 021609 104 F-------VEAQILEAIGIDYVDESEVLT--PADEENHINKHNF 138 (310)
Q Consensus 104 ~-------~~a~~~~~aGad~Vi~~~~~~--~~~~~~~i~~~~~ 138 (310)
. +.+-...++|||.|--++-+. ...+++.+...++
T Consensus 141 D~Tl~~L~~~Al~~A~AGaDiVAPSdMMDGrV~aIR~aLd~~g~ 184 (323)
T PRK09283 141 DETLELLAKQALSQAEAGADIVAPSDMMDGRVGAIREALDEAGF 184 (323)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEcccccccHHHHHHHHHHHCCC
Confidence 2 223334459999996444333 3344555555554
|
|
| >PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.2 Score=39.28 Aligned_cols=88 Identities=13% Similarity=0.087 Sum_probs=48.9
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC---CCCCHHHHHHHHh-hcCcceeeccccCcHHHHHHHHHcCCCEEEeC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA---RMSDPQLIKEIKQ-SVTIPVMAKARIGHFVEAQILEAIGIDYVDES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~---~~~~~~~i~~i~~-~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~ 121 (310)
..|+.+.+.||+.| ++|..++......-+. +.+....++.+++ ..++|+.+..+ ..+.++.+.++|++.+.-.
T Consensus 23 ~~a~~~~~~GAdiI-DIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~--~~~v~~~aL~~g~~~ind~ 99 (210)
T PF00809_consen 23 KRAREQVEAGADII-DIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDVPLSIDTF--NPEVAEAALKAGADIINDI 99 (210)
T ss_dssp HHHHHHHHTT-SEE-EEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTSEEEEEES--SHHHHHHHHHHTSSEEEET
T ss_pred HHHHHHHHhcCCEE-EecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCeEEEEECC--CHHHHHHHHHcCcceEEec
Confidence 35888999999965 8863322111100000 0011223444444 46899998775 3467788888899999744
Q ss_pred CCCC-chhHHHHHHhc
Q 021609 122 EVLT-PADEENHINKH 136 (310)
Q Consensus 122 ~~~~-~~~~~~~i~~~ 136 (310)
..++ ..+..++++++
T Consensus 100 ~~~~~~~~~~~l~a~~ 115 (210)
T PF00809_consen 100 SGFEDDPEMLPLAAEY 115 (210)
T ss_dssp TTTSSSTTHHHHHHHH
T ss_pred ccccccchhhhhhhcC
Confidence 4433 55555555443
|
It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B .... |
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=88.80 E-value=6.5 Score=35.40 Aligned_cols=169 Identities=19% Similarity=0.199 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~- 122 (310)
++|..++++||++| +.|. +|.|. -..+++..+++.+..|+=+-... ..+..+.+.+.-.|.|. .++
T Consensus 26 ~aA~~a~~aGAdgITvHlR---eDrRH-------I~d~Dv~~L~~~~~~~lNlE~a~-t~e~~~ia~~~kP~~vtLVPE~ 94 (239)
T PF03740_consen 26 EAARIAEEAGADGITVHLR---EDRRH-------IQDRDVRRLRELVKTPLNLEMAP-TEEMVDIALKVKPDQVTLVPEK 94 (239)
T ss_dssp HHHHHHHHTT-SEEEEEB----TT-SS-------S-HHHHHHHHHH-SSEEEEEEES-SHHHHHHHHHH--SEEEEE--S
T ss_pred HHHHHHHHcCCCEEEeccC---CCcCc-------CCHHHHHHHHHHcccCEEeccCC-CHHHHHHHHhCCcCEEEECCCC
Confidence 67888899999999 6773 11121 12578888888888884443332 34677889999999983 322
Q ss_pred --------CCC----chhHH---HHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 123 --------VLT----PADEE---NHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 123 --------~~~----~~~~~---~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
++. ...+. +.++..+..+.++++. +.+....+.+.|+|.|-+|...| ..+..
T Consensus 95 r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP-~~~qi~~A~~~Gad~VELhTG~y----A~a~~-------- 161 (239)
T PF03740_consen 95 REELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP-DPEQIEAAKELGADRVELHTGPY----ANAFD-------- 161 (239)
T ss_dssp GGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S--HHHHHHHHHTT-SEEEEETHHH----HHHSS--------
T ss_pred CCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC-CHHHHHHHHHcCCCEEEEehhHh----hhhcC--------
Confidence 121 22333 4444344445566664 56778888899999998874221 11100
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHh------hcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTK------QLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFK 257 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~------~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~ 257 (310)
..+ ....++++.+. ....+-|- |+.|+ +.+++..+.+ -+..-+-+|-+|+.
T Consensus 162 -------~~~---------~~~~ell~~l~~aa~~a~~lGL~Vn--AGHgL-~y~N~~~i~~i~~i~EvnIGHaiia 219 (239)
T PF03740_consen 162 -------DAE---------EAEEELLERLRDAARYAHELGLGVN--AGHGL-NYDNVRPIAAIPPIEEVNIGHAIIA 219 (239)
T ss_dssp -------HHH---------HHHHHHHHHHHHHHHHHHHTT-EEE--EETT---TTTHHHHHTSTTEEEEEE-HHHHH
T ss_pred -------CHH---------HHHHHHHHHHHHHHHHHHHcCCEEe--cCCCC-CHHHHHHHHhCCCceEEecCHHHHH
Confidence 000 00001111121 12345565 78999 6899988875 47889999988884
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.77 E-value=1.9 Score=40.94 Aligned_cols=74 Identities=28% Similarity=0.376 Sum_probs=53.4
Q ss_pred CHHHHHHHHHcCCcEEEeccCCcccccccCCC-CCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHH-cCCCEEEe
Q 021609 44 TPEQARVAEEAGACAVMALERVPADIRSQGGV-ARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEA-IGIDYVDE 120 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~-~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~-aGad~Vi~ 120 (310)
+.+.++..+++|++.+..-.+. +...|. .-.-+.+.++.+++... +||+++..+...+++..+.+ .|+|+|-.
T Consensus 157 Tvd~ak~~e~aG~~~ltVHGRt----r~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 157 TVDYAKMLEDAGVSLLTVHGRT----REQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred HHHHHHHHHhCCCcEEEEeccc----HHhcCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 3478999999999988332222 111222 12345789999999886 99999998887788877776 99999953
Q ss_pred C
Q 021609 121 S 121 (310)
Q Consensus 121 ~ 121 (310)
.
T Consensus 233 a 233 (358)
T KOG2335|consen 233 A 233 (358)
T ss_pred c
Confidence 3
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=88.75 E-value=25 Score=39.83 Aligned_cols=175 Identities=14% Similarity=0.129 Sum_probs=101.9
Q ss_pred HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE--eCCCC
Q 021609 48 ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD--ESEVL 124 (310)
Q Consensus 48 A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi--~~~~~ 124 (310)
.+++++.+...|+++.+. ..+. .|. .....+....+..++||.+.+--+ .++.+..+.++|.+-|- .+. +
T Consensus 1131 i~aAe~~~sPvIl~~~~~--~~~~-~~~---~~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~-l 1203 (1378)
T PLN02858 1131 VAAAEAEKSPAILQVHPG--ALKQ-GGI---PLVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSH-L 1203 (1378)
T ss_pred HHHHHHhCCCEEEECCcc--HHhh-cCH---HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCC-C
Confidence 445566677766555311 1111 111 123345555667899999975444 46888999999999993 433 2
Q ss_pred Cch-------hHHHHHHhcCC------C-Cc-------EE---EecCCHHHHHHHH-HhCCCEEEEcCCCCCcchHHHHH
Q 021609 125 TPA-------DEENHINKHNF------R-IP-------FV---CGCRNLGEALRRI-REGAAMIRTKGEAGTGNIIEAVR 179 (310)
Q Consensus 125 ~~~-------~~~~~i~~~~~------~-i~-------~~---v~~~t~~ea~~~~-~~Gad~V~v~g~~~~~~~~~~~~ 179 (310)
+.+ ++.++.+..+. | +. .. ...++++++.+-. +-|+|.+.+.-.. -|
T Consensus 1204 ~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt--~H------ 1275 (1378)
T PLN02858 1204 SFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGN--VH------ 1275 (1378)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeeccc--cc------
Confidence 322 33333333221 1 00 00 0034567777755 4588877653111 01
Q ss_pred HHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC---CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~---~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
..++.. ...-+++.++++++.+ ++|++.=.+.|+ ..+++.++++.|..=|=+++.+.
T Consensus 1276 ---------G~Y~~~----------~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~-~~~~~~~ai~~Gi~KiNi~T~~~ 1335 (1378)
T PLN02858 1276 ---------GKYPAS----------GPNLRLDLLKELRALSSKKGVLLVLHGASGL-PESLIKECIENGVRKFNVNTEVR 1335 (1378)
T ss_pred ---------ccCCCC----------CCccCHHHHHHHHHHhcCCCCcEEEeCCCCC-CHHHHHHHHHcCCeEEEeCHHHH
Confidence 011100 1223588899998877 799876567788 47999999999999999998876
Q ss_pred c
Q 021609 257 K 257 (310)
Q Consensus 257 ~ 257 (310)
.
T Consensus 1336 ~ 1336 (1378)
T PLN02858 1336 T 1336 (1378)
T ss_pred H
Confidence 4
|
|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=88.61 E-value=1.6 Score=42.63 Aligned_cols=77 Identities=25% Similarity=0.344 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCcEEEecc--CC-c-cc---------c--c-ccCCCCCC----CCHHHHHHHHhhc---CcceeeccccC
Q 021609 46 EQARVAEEAGACAVMALE--RV-P-AD---------I--R-SQGGVARM----SDPQLIKEIKQSV---TIPVMAKARIG 102 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~--~~-~-~~---------~--~-~~~G~~~~----~~~~~i~~i~~~~---~iPv~vk~~~~ 102 (310)
++|+.++++|+++|+..| .. . -+ . + ..+|.+-. ...+.+.++++.+ ++|++....+.
T Consensus 184 ~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~ 263 (420)
T PRK08318 184 EPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE 263 (420)
T ss_pred HHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC
Confidence 788999999999996555 11 0 00 1 0 11222111 1357788888876 79999887777
Q ss_pred cHHHHHHHHHcCCCEE-EeCC
Q 021609 103 HFVEAQILEAIGIDYV-DESE 122 (310)
Q Consensus 103 ~~~~a~~~~~aGad~V-i~~~ 122 (310)
..+++..+..+|||.| +.+.
T Consensus 264 s~~da~e~i~aGA~~Vqi~ta 284 (420)
T PRK08318 264 TWRDAAEFILLGAGTVQVCTA 284 (420)
T ss_pred CHHHHHHHHHhCCChheeeee
Confidence 7788888888999999 4444
|
|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=88.44 E-value=2.8 Score=38.21 Aligned_cols=89 Identities=8% Similarity=-0.014 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC---CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA---RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~---~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
+.|+.+.+.||+.| +++...+......-+- +.+....++.+++.+++|+.+..+ ..+.++.+.+.|++.|- ++
T Consensus 28 ~~a~~~~~~GAdiI-DIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~--~~~v~e~al~~G~~iINdis 104 (257)
T cd00739 28 AHAEKMIAEGADII-DIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDTF--RAEVARAALEAGADIINDVS 104 (257)
T ss_pred HHHHHHHHCCCCEE-EECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCC--CHHHHHHHHHhCCCEEEeCC
Confidence 57888999999965 8862211111000000 000112445566667899887665 34778889999999884 32
Q ss_pred CCCCchhHHHHHHhcC
Q 021609 122 EVLTPADEENHINKHN 137 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~ 137 (310)
......++.+.+++++
T Consensus 105 g~~~~~~~~~l~~~~~ 120 (257)
T cd00739 105 GGSDDPAMLEVAAEYG 120 (257)
T ss_pred CCCCChHHHHHHHHcC
Confidence 2211245555555543
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.40 E-value=15 Score=35.10 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=31.8
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
..++..+++. +++|+.+=...-+.|++.+.-+.+.|+.-+++.+-+-
T Consensus 101 pg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls 148 (347)
T COG0826 101 PGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELS 148 (347)
T ss_pred HHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCC
Confidence 3344444443 4678776456778888888888888988887666544
|
|
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=88.31 E-value=3.3 Score=37.24 Aligned_cols=42 Identities=26% Similarity=0.394 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHhhcCc-ceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 78 MSDPQLIKEIKQSVTI-PVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 78 ~~~~~~i~~i~~~~~i-Pv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
..+++.++++++.++. |+++...+...+.++.+..+|||+|+
T Consensus 169 ~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VV 211 (232)
T PRK04169 169 PVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIV 211 (232)
T ss_pred CCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 4568999999999988 99998888888899999999999996
|
|
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=4.5 Score=35.12 Aligned_cols=75 Identities=25% Similarity=0.246 Sum_probs=51.0
Q ss_pred cCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 41 DVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 41 ~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
++.+.+.+..+.+.|++.+ .+.+....... .+. .....+.++++++.+++|+++-..++ .+.+..+.+.|+|+|.
T Consensus 101 s~~s~e~a~~a~~~Gadyi-~~g~v~~t~~k-~~~-~~~g~~~l~~~~~~~~ipvia~GGI~-~~~~~~~~~~Ga~gva 175 (201)
T PRK07695 101 SVHSLEEAIQAEKNGADYV-VYGHVFPTDCK-KGV-PARGLEELSDIARALSIPVIAIGGIT-PENTRDVLAAGVSGIA 175 (201)
T ss_pred eCCCHHHHHHHHHcCCCEE-EECCCCCCCCC-CCC-CCCCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 5667788888999999976 44321111111 111 11236788888888899999887764 4678888899999994
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=88.07 E-value=8.2 Score=35.25 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=51.9
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+..+.+.|++.+.+.|.++-.. .++.++ -.++++.+.+. .++||++ ..
T Consensus 24 i~~l~~~Gv~gi~~~GstGE~~-------------------~ls~~E----------r~~l~~~~~~~~~~~~~vi~-gv 73 (281)
T cd00408 24 VEFLIEAGVDGLVVLGTTGEAP-------------------TLTDEE----------RKEVIEAVVEAVAGRVPVIA-GV 73 (281)
T ss_pred HHHHHHcCCCEEEECCCCcccc-------------------cCCHHH----------HHHHHHHHHHHhCCCCeEEE-ec
Confidence 4556677999999888654221 122111 12234434333 3689984 34
Q ss_pred CCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 230 GGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 230 GGI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
|+.++.+.+. .+.++|+|++++....+-..++....+-+.+..
T Consensus 74 ~~~~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia 119 (281)
T cd00408 74 GANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVA 119 (281)
T ss_pred CCccHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHH
Confidence 5544333332 233679999999999887666655555444333
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=3.1 Score=38.61 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=50.5
Q ss_pred CCCHHHHHHHH-HcCCcEE-EeccCCcccccccCCCC---CCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 42 VVTPEQARVAE-EAGACAV-MALERVPADIRSQGGVA---RMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 42 ~~~~~~A~~~~-~~Ga~~i-~~L~~~~~~~~~~~G~~---~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
.|+|+.|+.+. +.|+|++ +.+. .-+|.- --.+++.+++|++.+++|+......| ..++++.+.+.|+
T Consensus 155 yT~peeA~~Fv~~TgvD~LAvaiG-------t~HG~Y~~~p~L~~~~L~~I~~~~~iPLVLHGgSG~~~e~~~~ai~~Gi 227 (285)
T PRK07709 155 YADPAECKHLVEATGIDCLAPALG-------SVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGTGIPTADIEKAISLGT 227 (285)
T ss_pred CCCHHHHHHHHHHhCCCEEEEeec-------ccccCcCCCCccCHHHHHHHHHHHCCCEEEeCCCCCCHHHHHHHHHcCC
Confidence 58998888775 5899988 3331 111111 11357899999999999998876555 4678899999999
Q ss_pred CEE
Q 021609 116 DYV 118 (310)
Q Consensus 116 d~V 118 (310)
..|
T Consensus 228 ~Ki 230 (285)
T PRK07709 228 SKI 230 (285)
T ss_pred eEE
Confidence 998
|
|
| >PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4 | Back alignment and domain information |
|---|
Probab=87.90 E-value=3.8 Score=36.17 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=67.1
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHh--hcCcceeeccccCc----HHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQ--SVTIPVMAKARIGH----FVEAQ 108 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~--~~~iPv~vk~~~~~----~~~a~ 108 (310)
+++....+++.++.+...|+|++ ++|+ ..+...+... +....+.+..++. ..+..+++...-.. .++++
T Consensus 3 ~l~vp~~~~~~~~~a~~~g~D~vilDlEd~~~~~~K~~a---r~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~ 79 (221)
T PF03328_consen 3 GLFVPANSPKMLEKAAASGADFVILDLEDGVPPDEKDEA---REDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLE 79 (221)
T ss_dssp EEEEESTSHHHHHHHHTTCSSEEEEESSTTSSGGGHHHH---HHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHhcCCCEEEEeCcccCCcccchhh---HHHHHHHHHhhcccccccccceecCCCCCcchhhhhhh
Confidence 55677788999999999999988 6886 2222222221 0111223333332 23445665543221 12334
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHh-cCC---------CCcEEEecCCHHHHHHHHH----hCCCEEEE
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINK-HNF---------RIPFVCGCRNLGEALRRIR----EGAAMIRT 165 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~-~~~---------~i~~~v~~~t~~ea~~~~~----~Gad~V~v 165 (310)
+...|+|+|+.+...+..++....+. ..+ .+.+++-+.|.+-...+.+ -|.+.+.+
T Consensus 80 -~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~ 149 (221)
T PF03328_consen 80 -ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFF 149 (221)
T ss_dssp -HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE
T ss_pred -hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEe
Confidence 88999999988877666666555544 211 2556666666644443322 25555544
|
1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B .... |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=87.73 E-value=3.1 Score=38.53 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=52.0
Q ss_pred cCCCHHHHHHHHH-cCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCE
Q 021609 41 DVVTPEQARVAEE-AGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDY 117 (310)
Q Consensus 41 ~~~~~~~A~~~~~-~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~ 117 (310)
..++++.|..+.+ .|+|.+ +.+.+.... +.+. -...++.++++++.+++|+.....-+ ..+.++.+.++|++.
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~---~~~~-~~l~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~k 226 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGK---YKGE-PGLDFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAK 226 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccc---cCCC-CccCHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence 3678999988876 999987 233211000 0011 12347899999999999998766323 357788899999999
Q ss_pred E-EeCC
Q 021609 118 V-DESE 122 (310)
Q Consensus 118 V-i~~~ 122 (310)
| +.++
T Consensus 227 iNv~T~ 232 (282)
T TIGR01859 227 INIDTD 232 (282)
T ss_pred EEECcH
Confidence 9 4443
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=87.62 E-value=13 Score=35.17 Aligned_cols=64 Identities=20% Similarity=0.233 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEecC-CHHHHHHHHHhCCCEEEEcCC
Q 021609 104 FVEAQILEAIGIDYV-DESEVLTPADEENHINKHNFRIPFVCGCR-NLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 104 ~~~a~~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~~ea~~~~~~Gad~V~v~g~ 168 (310)
..++..+.++|+|.| +...+.+..+....+++ +..+|+++|+| +...|..+++.|+|-+.+++.
T Consensus 37 v~QI~~L~~aGceiVRvavp~~~~A~al~~I~~-~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPG 102 (346)
T TIGR00612 37 VAQIRALEEAGCDIVRVTVPDRESAAAFEAIKE-GTNVPLVADIHFDYRLAALAMAKGVAKVRINPG 102 (346)
T ss_pred HHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHh-CCCCCEEEeeCCCcHHHHHHHHhccCeEEECCC
Confidence 366788899999999 44444444445555544 56799999987 477888899999999999854
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.61 E-value=3.3 Score=38.35 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=50.6
Q ss_pred ccCCCHHHHHHHH-HcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCC
Q 021609 40 MDVVTPEQARVAE-EAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGID 116 (310)
Q Consensus 40 ~~~~~~~~A~~~~-~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad 116 (310)
.++++++.|+.+. +.|+|.+ +..-+.-.... .. -...++.++++++.+++|+.+....| ..+.++.+.++|++
T Consensus 150 ~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~--~~--~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~ 225 (281)
T PRK06806 150 MLLTSTTEAKRFAEETDVDALAVAIGNAHGMYN--GD--PNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIR 225 (281)
T ss_pred ceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCC--CC--CccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCc
Confidence 3468899888876 5699987 32221111000 10 12347899999999999998766333 35778889999999
Q ss_pred EE
Q 021609 117 YV 118 (310)
Q Consensus 117 ~V 118 (310)
.|
T Consensus 226 ki 227 (281)
T PRK06806 226 KI 227 (281)
T ss_pred EE
Confidence 99
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 310 | ||||
| 2zbt_A | 297 | Crystal Structure Of Pyridoxine Biosynthesis Protei | 1e-103 | ||
| 2nv1_A | 305 | Structure Of The Synthase Subunit Pdx1 (Yaad) Of Pl | 2e-91 | ||
| 2nv2_A | 294 | Structure Of The Plp Synthase Complex Pdx12 (YAADE) | 3e-91 | ||
| 2iss_A | 313 | Structure Of The Plp Synthase Holoenzyme From Therm | 2e-89 | ||
| 1znn_A | 325 | Structure Of The Synthase Subunit Of Plp Synthase L | 3e-89 | ||
| 3fem_A | 297 | Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of | 3e-86 | ||
| 4adt_A | 297 | Crystal Structure Of Plasmodial Plp Synthase Length | 3e-84 | ||
| 4ads_A | 282 | Crystal Structure Of Plasmodial Plp Synthase Comple | 5e-84 | ||
| 3o05_A | 291 | Crystal Structure Of Yeast Pyridoxal 5-Phosphate Sy | 2e-82 | ||
| 2yzr_A | 330 | Crystal Structure Of Pyridoxine Biosynthesis Protei | 3e-80 | ||
| 4fiq_A | 335 | Crystal Structure Of Pyridoxal Biosynthesis Lyase P | 5e-79 |
| >pdb|2ZBT|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From Thermus Thermophilus Hb8 Length = 297 | Back alignment and structure |
|
| >pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp Synthase From Bacillus Subtilis Length = 305 | Back alignment and structure |
|
| >pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM BACILLUS Subtilis Length = 294 | Back alignment and structure |
|
| >pdb|2ISS|A Chain A, Structure Of The Plp Synthase Holoenzyme From Thermotoga Maritima Length = 313 | Back alignment and structure |
|
| >pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase Length = 325 | Back alignment and structure |
|
| >pdb|3FEM|A Chain A, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp Synthase From Saccharomyces Cerevisiae Length = 297 | Back alignment and structure |
|
| >pdb|4ADT|A Chain A, Crystal Structure Of Plasmodial Plp Synthase Length = 297 | Back alignment and structure |
|
| >pdb|4ADS|A Chain A, Crystal Structure Of Plasmodial Plp Synthase Complex Length = 282 | Back alignment and structure |
|
| >pdb|3O05|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase Snz1 Complxed With Substrate Plp Length = 291 | Back alignment and structure |
|
| >pdb|2YZR|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From Methanocaldococcus Jannaschii Length = 330 | Back alignment and structure |
|
| >pdb|4FIQ|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs From Pyrococcus Horikoshii Length = 335 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* Length = 297 | Back alignment and structure |
|---|
Score = 385 bits (990), Expect = e-135
Identities = 205/293 (69%), Positives = 245/293 (83%), Gaps = 1/293 (0%)
Query: 17 TETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVA 76
+K F +K G A+M +GGVIMDV TPEQA +AEEAGA AVMALERVPADIR+QGGVA
Sbjct: 3 GGMEKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVA 62
Query: 77 RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKH 136
RMSDP++IKEI +V+IPVMAK RIGHFVEA ILEAIG+D++DESEVLTPADEE+HI+K
Sbjct: 63 RMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKW 122
Query: 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196
F++PFVCG RNLGEALRRI EGAAMIRTKGEAGTGN++EAVRH R++ +IR ++++ +
Sbjct: 123 KFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLRE 182
Query: 197 DEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256
DE+ +AK+I AP++LV GRLPVV+FAAGG+ATPADAA+MM LG DGVFVGSG+F
Sbjct: 183 DELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIF 242
Query: 257 KSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 308
KSGDP KRA+AIVRAV HY+DPEVLAEVS LGE MVG+NL + ER A R
Sbjct: 243 KSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKR 295
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A Length = 297 | Back alignment and structure |
|---|
Score = 385 bits (989), Expect = e-135
Identities = 170/293 (58%), Positives = 223/293 (76%), Gaps = 1/293 (0%)
Query: 17 TETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVA 76
+K G +ML+GGVIMDV EQA++AE+AGA VM LE +P+++R+ GVA
Sbjct: 3 DYADNDSILLKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVA 62
Query: 77 RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKH 136
R DP I+EI++ ++I V+AK RIGHFVEAQILE + +D +DESEVLT ADE NHINKH
Sbjct: 63 RSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHINKH 122
Query: 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196
F+ PFVCGC NLGEALRRI EGA+MIRTKGEAGTGNIIEA++H+R+V +I+ L ++D+
Sbjct: 123 KFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDE 182
Query: 197 DEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256
EV+ FAKK+ AP DL++ T++L RLPVV+FAAGG+ATPADAAM MQLG DGVFVGSG+F
Sbjct: 183 SEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIF 242
Query: 257 KSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV-ERFASR 308
+S +P K A +IV AV+++++P++L VS GLG+AM G +K +
Sbjct: 243 ESENPQKMASSIVMAVSNFNNPKILLNVSLGLGKAMHGNTKVSNKWKNKSEED 295
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A Length = 291 | Back alignment and structure |
|---|
Score = 379 bits (973), Expect = e-133
Identities = 167/288 (57%), Positives = 217/288 (75%), Gaps = 5/288 (1%)
Query: 26 VKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIK 85
ML+GGVIMDVVTPEQA++AE++GACAVMALE +PAD+R G V RMSDP++IK
Sbjct: 2 HHHHHHGMLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIK 61
Query: 86 EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG 145
+I SV+IPVMAK RIGHFVEAQI+EA+ +DY+DESEVLTPAD +HI K F++PFVCG
Sbjct: 62 DIMNSVSIPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCG 121
Query: 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD-DEVFTFAK 204
++LGEALRRI EGAAMIRTKGEAGTG++ EAV+H+R + +I+ + + D++ A+
Sbjct: 122 AKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAE 181
Query: 205 KIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264
++ P L+ + G+LPVV+FAAGGVATPADAA++MQLGCDGVFVGSG+FKS +PV+
Sbjct: 182 EMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRL 241
Query: 265 AQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD----HKVERFASR 308
A A+V A TH+ +P L EVS LGE M G+++ R +
Sbjct: 242 ATAVVEATTHFDNPSKLLEVSSDLGELMGGVSIESISHASNGVRLSEI 289
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A Length = 305 | Back alignment and structure |
|---|
Score = 376 bits (966), Expect = e-132
Identities = 182/293 (62%), Positives = 237/293 (80%), Gaps = 1/293 (0%)
Query: 17 TETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVA 76
+ + VK G+A+M +GGVIMDV+ EQA++AEEAGA AVMALERVPADIR+ GGVA
Sbjct: 3 SMAQTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVA 62
Query: 77 RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKH 136
RM+DP +++E+ +V+IPVMAKARIGH VEA++LEA+G+DY+DESEVLTPADEE H+NK+
Sbjct: 63 RMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKN 122
Query: 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196
+ +PFVCGCR+LGEA RRI EGA+M+RTKGE GTGNI+EAVRH+R V +R + M +
Sbjct: 123 EYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSE 182
Query: 197 DEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256
DE+ T AK + APY+L++Q K+ G+LPVV+FAAGGVATPADAA+MMQLG DGVFVGSG+F
Sbjct: 183 DELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 242
Query: 257 KSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD-HKVERFASR 308
KS +P K A+AIV A TH++D +++AE+S LG AM G+ +S+ +R R
Sbjct: 243 KSDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQER 295
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} Length = 330 | Back alignment and structure |
|---|
Score = 360 bits (924), Expect = e-125
Identities = 183/329 (55%), Positives = 229/329 (69%), Gaps = 38/329 (11%)
Query: 20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMS 79
KK +K G A+M++ GV+MDV EQA++AEEAGA AVMALERVPADIR+ GGVARMS
Sbjct: 2 KKGTDLLKKGFAKMVKHGVVMDVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMS 61
Query: 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFR 139
DP LI+EI +V+IPVMAK RIGH EA +LEAIG+D +DESEVLT AD HI K F
Sbjct: 62 DPALIEEIMDAVSIPVMAKCRIGHTTEALVLEAIGVDMIDESEVLTQADPFFHIYKKKFN 121
Query: 140 IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199
+PFVCG RNLGEA+RRI EGAAMIRTKGEAGTGNI+EAVRH+R + I L+ M D+EV
Sbjct: 122 VPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDEEV 181
Query: 200 FTFAK-------------------------------------KIAAPYDLVMQTKQLGRL 222
+ AK I Y+++++ K+LGRL
Sbjct: 182 YGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRL 241
Query: 223 PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLA 282
PVV+FAAGGVATPADAA+MMQLG DGVFVGSG+FKS +P++RA+AIV A +Y P+++A
Sbjct: 242 PVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDKPDIVA 301
Query: 283 EVSCGLGEAMVGLNLSD-HKVERFASRSE 310
EVS LGEAM G++++ + E+ R +
Sbjct: 302 EVSKNLGEAMKGIDITQISEAEKMQYRGD 330
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 7e-20
Identities = 43/265 (16%), Positives = 85/265 (32%), Gaps = 57/265 (21%)
Query: 27 KVGLAQMLRGGVIMDV-VTPEQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQL 83
K L + L+GG+I+ P + +E G +MA + G R + +
Sbjct: 7 KEKLMEQLKGGIIVSCQALPGEPLYSETGGIMPLMAKAAQ------EAGAVGIRANSVRD 60
Query: 84 IKEIKQSVTIPVMAKARIGH----------FVEAQILEAIGIDYV-------DESEVLTP 126
IKEI+ +P++ + + E L A+ I + D + L
Sbjct: 61 IKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDI 120
Query: 127 ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186
A + + + E L + G + T T
Sbjct: 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYS------------ 168
Query: 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC 246
++ L+ + G + V+ A G + +P +A + LG
Sbjct: 169 ----------------RQEAGPDVALIEALCKAG-IAVI--AEGKIHSPEEAKKINDLGV 209
Query: 247 DGVFVGSGVFKSGDPVKRAQAIVRA 271
G+ VG + + + +R +++
Sbjct: 210 AGIVVGGAITRPKEIAERFIEALKS 234
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 77.0 bits (189), Expect = 9e-17
Identities = 43/264 (16%), Positives = 80/264 (30%), Gaps = 57/264 (21%)
Query: 27 KVGLAQMLRGGVIMDVVTPEQARVAE---EAGACAVMALERVPADIRSQGGVARMSDPQL 83
++ GG+I+ Q + A MAL A ++ R+
Sbjct: 9 QLDKNIAASGGLIVSC----QPVPGSPLDKPEIVAAMAL----AAEQAGAVAVRIEGIDN 60
Query: 84 IKEIKQSVTIPVMAKARIGH----------FVEAQILEAIGIDYV--DESEVLTPADEEN 131
++ + V++P++ + + L G + D + P E
Sbjct: 61 LRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEA 120
Query: 132 HINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRV 190
+ + H+ + + C ++ + L R GA +I T T
Sbjct: 121 LLARIHHHHLLTMADCSSVDDGLACQRLGADIIGTTMSGYTTPDTPEE------------ 168
Query: 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250
LV G V+ A G +PA AA ++ G V
Sbjct: 169 -----------------PDLPLVKALHDAG-CRVI--AEGRYNSPALAAEAIRYGAWAVT 208
Query: 251 VGSGVFKSGDPVKR-AQAIVRAVT 273
VGS + + A+ +A +
Sbjct: 209 VGSAITRLEHICGWYNDALKKAAS 232
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Length = 229 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 4e-09
Identities = 40/251 (15%), Positives = 79/251 (31%), Gaps = 50/251 (19%)
Query: 27 KVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKE 86
++ + GG+I+ + + + A MA A + R+ + ++
Sbjct: 9 RLEQSVHENGGLIVSCQPVPGSPMDKPEIVAA-MAQ----AAASAGAVAVRIEGIENLRT 63
Query: 87 IKQSVTIPVMAKARIGH----------FVEAQILEAIGIDYV--DESEVLTPADEENHIN 134
++ +++P++ + + L G D + D S P D ++ +
Sbjct: 64 VRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLT 123
Query: 135 KHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193
+ C + E + ++G I T TG I
Sbjct: 124 RIRLHGLLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPI------------------- 164
Query: 194 MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
+ +V Q G V+ A G TPA AA ++ G V VGS
Sbjct: 165 ----------TPVEPDLAMVTQLSHAG-CRVI--AEGRYNTPALAANAIEHGAWAVTVGS 211
Query: 254 GVFKSGDPVKR 264
+ + +
Sbjct: 212 AITRIEHICQW 222
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 1e-07
Identities = 37/230 (16%), Positives = 64/230 (27%), Gaps = 63/230 (27%)
Query: 43 VTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG 102
+ + A A E GA + R + + I IK++V +PV+ +
Sbjct: 24 IMSKMALAAYEGGAVGI-----------------RANTKEDILAIKETVDLPVIGIVKRD 66
Query: 103 H----------FVEAQILEAIGIDYV------DESEVLTPADEENHINKHNFRIPFVCGC 146
+ E L + + + T + ++I H + +
Sbjct: 67 YDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADI 126
Query: 147 RNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI 206
+ EA R G I T T T + +
Sbjct: 127 ATVEEAKNAARLGFDYIGTTLHGYTSY---------------------------TQGQLL 159
Query: 207 AAP-YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255
+ + Q V+ A G V TP +M LG VG +
Sbjct: 160 YQNDFQFLKDVLQSVDAKVI--AEGNVITPDMYKRVMDLGVHCSVVGGAI 207
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A Length = 264 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
++PV+ A G+ +P DAA M+LG DGV + + V + DPVK A+A+ AV
Sbjct: 178 KVPVIVDA--GIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAV 227
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Length = 265 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
++PV+ A GV T +DAA+ M+LGC+ V + + + + DPV A+A+ A+
Sbjct: 187 KVPVLVDA--GVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} Length = 268 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 2e-07
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 206 IAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264
+ L + ++ PVV A G+ P+ AA +M+LG D V V + + ++ DP
Sbjct: 162 VRTRALLELFAREKASLPPVVVDA--GLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAM 219
Query: 265 AQAIVRAV 272
A+A AV
Sbjct: 220 AEAFRLAV 227
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 Length = 225 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 2e-04
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
G++T D ++LG GV + SGV K+ DP K +V +
Sbjct: 183 AGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSGI 225
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Length = 262 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 6e-04
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 17/74 (22%)
Query: 211 DLVMQTKQLGRLPVVHFAAG-GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269
L+ + K++ PV A G G++ P + Q G DGV +GS A+V
Sbjct: 191 SLIQEVKKVTNKPV---AVGFGISKPEHVKQIAQWGADGVIIGS-------------AMV 234
Query: 270 RAVTHYSDPEVLAE 283
R + + P+
Sbjct: 235 RQLGEAASPKQGLR 248
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 6e-04
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275
K+L + GG+ + + + G G+ ++ +P A+A +
Sbjct: 162 KKLIEMGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIKRI 219
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} Length = 219 | Back alignment and structure |
|---|
Score = 38.7 bits (91), Expect = 9e-04
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
G++ D + LG +GV + SGV K+ + + + +++ +
Sbjct: 176 GAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRELIKFI 219
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 310 | |||
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 100.0 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 100.0 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 100.0 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 100.0 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 99.97 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.92 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.91 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 99.88 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.88 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 99.87 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 99.87 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.87 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 99.83 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.75 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 99.75 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.74 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.71 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 99.71 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.71 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.7 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.68 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.68 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.67 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.66 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.64 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.64 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.62 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 99.62 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 99.6 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 99.59 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 99.59 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 99.57 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 99.56 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 99.55 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.55 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 99.55 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 99.53 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 99.53 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 99.52 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 99.52 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 99.51 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 99.51 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 99.51 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 99.5 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 99.49 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 99.48 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 99.48 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 99.47 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 99.47 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 99.47 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 99.45 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 99.45 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 99.45 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 99.44 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 99.43 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 99.42 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 99.42 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 99.42 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 99.41 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 99.38 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 99.38 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 99.38 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 99.38 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 99.36 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 99.36 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 99.36 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 99.35 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 99.33 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 99.33 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 99.33 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 99.32 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 99.3 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 99.3 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 99.3 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 99.27 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 99.27 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 99.27 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 99.25 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 99.23 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 99.23 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 99.23 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 99.23 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 99.22 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 99.22 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 99.22 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 99.21 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 99.2 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 99.2 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 99.18 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 99.18 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 99.18 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 99.16 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 99.15 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 99.15 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.12 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 99.11 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 99.1 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 99.08 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.08 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 99.07 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 99.07 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 99.07 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.06 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 99.06 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 99.02 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.01 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.0 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 98.99 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 98.97 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 98.93 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 98.91 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.9 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.9 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 98.88 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 98.86 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 98.85 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 98.84 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 98.84 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 98.82 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 98.82 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 98.8 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 98.75 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 98.72 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 98.72 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 98.7 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 98.67 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 98.67 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 98.67 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 98.64 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 98.64 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 98.63 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 98.53 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 98.53 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 98.53 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 98.5 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 98.49 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 98.46 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 98.46 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 98.44 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 98.43 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 98.37 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 98.35 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 98.35 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 98.28 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 98.26 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 98.24 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 98.19 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 98.18 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 98.16 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 98.09 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 98.05 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 98.04 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 98.02 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 98.02 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 97.99 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 97.99 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 97.99 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 97.96 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.94 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 97.94 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 97.87 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 97.84 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 97.84 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 97.82 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 97.82 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 97.77 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 97.75 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.74 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 97.73 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 97.73 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 97.73 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 97.71 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 97.71 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 97.7 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 97.69 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 97.66 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 97.66 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 97.65 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 97.62 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 97.6 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 97.6 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 97.56 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 97.53 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 97.53 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 97.52 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 97.51 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 97.49 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 97.46 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 97.43 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 97.38 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 97.38 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 97.38 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 97.36 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 97.35 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 97.34 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 97.32 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 97.32 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 97.31 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 97.27 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 97.27 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 97.17 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 97.15 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 97.15 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 97.07 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 97.06 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 97.04 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 97.03 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 97.0 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 96.92 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 96.9 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 96.9 | |
| 3qw3_A | 255 | Orotidine-5-phosphate decarboxylase/orotate phosph | 96.89 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 96.88 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 96.78 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.77 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 96.77 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 96.76 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 96.7 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 96.68 | |
| 1s2w_A | 295 | Phosphoenolpyruvate phosphomutase; phosphonopyruva | 96.65 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 96.58 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 96.57 | |
| 2vws_A | 267 | YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher | 96.55 | |
| 3qw4_B | 453 | UMP synthase; N-terminal orotidine monophosphate d | 96.53 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 96.53 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 96.51 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 96.49 | |
| 1dxe_A | 256 | 2-dehydro-3-deoxy-galactarate aldolase; class II a | 96.49 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 96.49 | |
| 2v5j_A | 287 | 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l | 96.48 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 96.43 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 96.42 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 96.41 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 96.37 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 96.27 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 96.24 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 96.21 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 96.09 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 96.04 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 95.88 | |
| 2ffc_A | 353 | Orotidine 5-monophosphate decarboxylase; PV-PF10_0 | 95.75 | |
| 3eww_A | 260 | Ompdecase, orotidine-5'-phosphate decarboxylase; T | 95.74 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 95.71 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 95.65 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 95.64 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 95.53 | |
| 2i9e_A | 259 | Triosephosphate isomerase; 2.00A {Tenebrio molitor | 95.49 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 95.44 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 95.43 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 95.41 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 95.33 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 95.19 | |
| 1yya_A | 250 | Triosephosphate isomerase; riken structural genomi | 95.18 | |
| 3vav_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 95.13 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 95.11 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 95.1 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 95.02 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 94.95 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 94.9 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 94.82 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 94.78 | |
| 1aw2_A | 256 | Triosephosphate isomerase; psychrophilic, vibrio m | 94.71 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 94.56 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 94.56 | |
| 3qz6_A | 261 | HPCH/HPAI aldolase; structural genomics, PSI-biolo | 94.56 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 94.55 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 94.53 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 94.51 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 94.48 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 94.46 | |
| 1izc_A | 339 | Macrophomate synthase intermolecular diels-aldera; | 94.45 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 94.4 | |
| 3s1x_A | 223 | Probable transaldolase; alpha-beta barrel, conform | 94.34 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 94.31 | |
| 1tre_A | 255 | Triosephosphate isomerase; intramolecular oxidored | 94.26 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 94.26 | |
| 2jgq_A | 233 | Triosephosphate isomerase; glycolysis, pentose shu | 94.26 | |
| 3r8r_A | 212 | Transaldolase; pentose phosphate pathway, schiff b | 94.17 | |
| 1mo0_A | 275 | TIM, triosephosphate isomerase; structural genomic | 94.08 | |
| 1r2r_A | 248 | TIM, triosephosphate isomerase; closed loop confor | 93.97 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 93.9 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 93.81 | |
| 1o5x_A | 248 | TIM, triosephosphate isomerase; 2- phosphoglycerat | 93.71 | |
| 1m3u_A | 264 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.69 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 93.68 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 93.67 | |
| 2btm_A | 252 | TIM, protein (triosephosphate isomerase); thermoph | 93.61 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 93.61 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 93.6 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 93.53 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 93.45 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 93.41 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 93.4 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 93.39 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 93.39 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 93.38 | |
| 2j27_A | 250 | Triosephosphate isomerase glycosomal; TIM, 2PG, LO | 93.36 | |
| 1m6j_A | 261 | TIM, TPI, triosephosphate isomerase; asymmetry, mo | 93.34 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 93.31 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 93.28 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 93.28 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 93.24 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 93.23 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 93.03 | |
| 3gdm_A | 267 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 92.98 | |
| 3g3d_A | 312 | UMP synthase, uridine 5'-monophosphate synthase; C | 92.97 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 92.87 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 92.87 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 92.83 | |
| 2fds_A | 352 | Orotidine-monophosphate-decarboxylase; TIM barrel, | 92.83 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 92.75 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 92.72 | |
| 3luf_A | 259 | Two-component system response regulator/ggdef doma | 92.72 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 92.63 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 92.56 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 92.48 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 92.47 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 92.32 | |
| 2yc6_A | 257 | Triosephosphate isomerase; glycolysis; HET: PGA; 1 | 92.03 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 92.01 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 91.99 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 91.98 | |
| 2vxn_A | 251 | Triosephosphate isomerase; fatty acid biosynthesis | 91.96 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 91.89 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 91.86 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 91.8 | |
| 3m9y_A | 254 | Triosephosphate isomerase; TIM barrel, glycolysis, | 91.79 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 91.66 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 91.64 | |
| 1ney_A | 247 | TIM, triosephosphate isomerase; yeast, DHAP, dihyd | 91.63 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 91.62 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 91.55 | |
| 2i1o_A | 398 | Nicotinate phosphoribosyltransferase; ZIN ION, zin | 91.54 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 91.52 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 91.44 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 91.4 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 91.31 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 91.25 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 91.21 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 91.2 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 91.14 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 91.12 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 91.11 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 91.04 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 91.03 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 91.03 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 91.02 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 90.92 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 90.89 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 90.88 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 90.82 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 90.8 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 90.77 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 90.73 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 90.73 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 90.68 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 90.66 | |
| 1b9b_A | 255 | TIM, protein (triosephosphate isomerase); thermoph | 90.65 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 90.64 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 90.62 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 90.59 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 90.55 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 90.53 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 90.47 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 90.46 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 90.46 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 90.44 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 90.3 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 90.3 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 90.21 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 90.21 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 90.16 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 90.08 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 90.06 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 89.99 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 89.88 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 89.73 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 89.67 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 89.64 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 89.63 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 89.52 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 89.31 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 89.13 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 89.08 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 89.07 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 88.89 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 88.87 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 88.8 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 88.77 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 88.72 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 88.7 | |
| 1k66_A | 149 | Phytochrome response regulator RCPB; CHEY homologu | 88.65 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 88.49 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 88.35 | |
| 3txv_A | 450 | Probable tagatose 6-phosphate kinase; structural g | 88.33 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 88.29 | |
| 2fiq_A | 420 | Putative tagatose 6-phosphate kinase 1; structural | 88.27 | |
| 3eez_A | 378 | Putative mandelate racemase/muconate lactonizing e | 88.19 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 88.08 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 88.05 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 87.95 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 87.86 | |
| 4gbu_A | 400 | NADPH dehydrogenase 1; alpha/beta barrel, enenone | 87.74 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 87.69 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 87.69 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 87.65 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 87.61 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 87.59 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 87.59 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 87.54 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 87.52 | |
| 3eol_A | 433 | Isocitrate lyase; seattle structural center for in | 87.49 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 87.48 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 87.42 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 87.37 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 87.33 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 87.27 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 87.15 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 87.09 | |
| 2v5b_A | 244 | Triosephosphate isomerase; TIM, unfolding, monotct | 87.08 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 86.81 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 86.79 | |
| 3krs_A | 271 | Triosephosphate isomerase; ssgcid, SBRI, emerald b | 86.65 | |
| 1f8m_A | 429 | Isocitrate lyase, ICL; alpha-beta barrel, helix-sw | 86.62 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 86.58 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 86.54 | |
| 3qst_A | 255 | Triosephosphate isomerase, putative; TIM barrel; 1 | 86.54 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 86.45 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 86.45 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 86.44 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 86.3 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 86.29 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 86.28 | |
| 2hjp_A | 290 | Phosphonopyruvate hydrolase; phosporus-Ca cleavage | 86.19 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 86.18 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 86.1 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 86.04 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 85.96 | |
| 1sfl_A | 238 | 3-dehydroquinate dehydratase; 3-dehydroquinase, en | 85.91 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 85.83 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 85.82 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 85.75 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 85.67 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 85.6 | |
| 3to5_A | 134 | CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p | 85.53 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 85.51 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 85.48 | |
| 3mcm_A | 442 | 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine | 85.41 | |
| 1k68_A | 140 | Phytochrome response regulator RCPA; phosphorylate | 85.34 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 85.3 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 85.12 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 84.97 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 84.93 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 84.86 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 84.75 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 84.73 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 84.71 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 84.67 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 84.46 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 84.46 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 84.36 | |
| 2yr1_A | 257 | 3-dehydroquinate dehydratase; amino acid biosynthe | 84.35 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 84.28 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 84.27 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 84.2 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 84.09 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 84.09 | |
| 3th6_A | 249 | Triosephosphate isomerase; alpha/beta barrel, embr | 84.08 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 84.04 | |
| 3i4e_A | 439 | Isocitrate lyase; structural genomics, seattle str | 83.93 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 83.74 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 83.67 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 83.6 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 83.46 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 83.42 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 83.42 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 83.39 | |
| 3s1x_A | 223 | Probable transaldolase; alpha-beta barrel, conform | 83.39 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 83.32 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 83.32 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 83.31 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 83.26 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 83.2 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 83.17 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 83.04 | |
| 3kht_A | 144 | Response regulator; PSI-II, 11023K, structural gen | 82.96 | |
| 3f6p_A | 120 | Transcriptional regulatory protein YYCF; unphospho | 82.77 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 82.75 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 82.68 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 82.66 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 82.59 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 82.35 | |
| 3gl9_A | 122 | Response regulator; beta-sheet, surrounded by alph | 81.86 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 81.73 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 81.24 | |
| 3q9s_A | 249 | DNA-binding response regulator; DNA binding protei | 81.11 | |
| 2yxb_A | 161 | Coenzyme B12-dependent mutase; alpha/beta, structu | 81.07 | |
| 3o6c_A | 260 | PNP synthase, pyridoxine 5'-phosphate synthase; st | 80.99 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 80.96 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 80.93 |
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=331.98 Aligned_cols=276 Identities=61% Similarity=1.009 Sum_probs=243.9
Q ss_pred hhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHH
Q 021609 33 MLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 33 ~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
+|++|+|++++++++|+.++++||.+++.|+.+|.++|.++|.+++.+++.|++|++++++||+.+.+++++.++|.+++
T Consensus 9 ~~~~~vimdv~~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~righ~~EAqilea 88 (291)
T 3o07_A 9 MLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRIGHFVEAQIIEA 88 (291)
T ss_dssp -CTTCEEEEESSHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHHHHHHH
T ss_pred cccCCeeeecCCHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHH
Confidence 56699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 113 IGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
+|+|+|..++.++|.+....+.++.++++++++|+|.+|++++.+.|+++|.+.|..+||++.++++++|.....++.+.
T Consensus 89 ~GaD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~ 168 (291)
T 3o07_A 89 LEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQ 168 (291)
T ss_dssp TTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888877778999999999999999999999999999998889999999999999988888888
Q ss_pred cc-ChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 193 NM-DDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 193 ~~-~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
.. ++++++.++++..++|++++++++..++||++|++|||.|++|+.+++++|||||+|||++++++||...+++|+++
T Consensus 169 g~~t~~el~~~a~~~~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~A 248 (291)
T 3o07_A 169 QLKSEDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEA 248 (291)
T ss_dssp TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHH
T ss_pred cCCCHHHhhhcccccCCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHH
Confidence 88 77777667777788999999999888999976689999999999999999999999999999999999999999999
Q ss_pred HhccCChhhhhhhhhhcccchhcccCccc---h-hhhhccc
Q 021609 272 VTHYSDPEVLAEVSCGLGEAMVGLNLSDH---K-VERFASR 308 (310)
Q Consensus 272 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~ 308 (310)
+++|.+|..+.++++.+|++|+|++.+.+ + -||++.|
T Consensus 249 v~~~~~~~~~~~~s~~l~~~m~g~~~~~~~~~~~~~~~~~r 289 (291)
T 3o07_A 249 TTHFDNPSKLLEVSSDLGELMGGVSIESISHASNGVRLSEI 289 (291)
T ss_dssp HHTTTCHHHHHHHHSSCCCC---------------------
T ss_pred HHhccCHHHHHHHHhcccccccCcchhhhccCchHHHHhhc
Confidence 99999999999999999999999999998 3 4566665
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-43 Score=323.11 Aligned_cols=289 Identities=63% Similarity=0.957 Sum_probs=242.8
Q ss_pred cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc
Q 021609 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR 100 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~ 100 (310)
+++|.+++++.+++++|+|++++.+++|+.++++||.+|+.|+|.|++++.++|++++.+++.++++++++++||+.|++
T Consensus 3 ~~~~~~~~~~~~~~kgGvI~d~~~~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~arm~~p~~i~~I~~av~iPV~~K~r 82 (330)
T 2yzr_A 3 KGTDLLKKGFAKMVKHGVVMDVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDAVSIPVMAKCR 82 (330)
T ss_dssp --CTHHHHHHHHTTTTSEEEEESSHHHHHHHHHHTCSEEEECSSCHHHHC--CCCCCCCCHHHHHHHHHHCSSCEEEEEE
T ss_pred CccHHHHHHHHHHccCCceeeCCHHHHHHHHHHcCCCEEEecCCccccccCCcchhhcCCHHHHHHHHHhcCCCeEEEEe
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHH
Q 021609 101 IGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180 (310)
Q Consensus 101 ~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~ 180 (310)
+++++.+|.++++|||.|+.+..+++.+....+.++.++.+++.++++..|+.+....|+++|.+||-.++++++++++|
T Consensus 83 ig~~~e~qilea~GaD~Id~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~~~Ga~~i~t~ge~g~~~~ve~v~H 162 (330)
T 2yzr_A 83 IGHTTEALVLEAIGVDMIDESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIVEAVRH 162 (330)
T ss_dssp TTCHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHH
T ss_pred ecchHHHHHHHHcCCCEEehhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHHhcCcceeeccCCCCcccchhHHHH
Confidence 99999999999999999987776777666444545557899999999999999999999999999998889999999999
Q ss_pred HHhhccceEeecccChhHHHHhhhccCCcH-------------------------------------HHHHHHhhcCCCC
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPY-------------------------------------DLVMQTKQLGRLP 223 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~-------------------------------------~~i~~i~~~~~iP 223 (310)
+|.....++.+...+.++++..+...+.++ ++++++++..++|
T Consensus 163 ~r~~~~~~~~~s~~~~~El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~~IP 242 (330)
T 2yzr_A 163 MRLMNEAIAQLQRMTDEEVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLP 242 (330)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhCCCC
Confidence 988776777777777777753332223333 8888888877899
Q ss_pred EEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccchh-
Q 021609 224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV- 302 (310)
Q Consensus 224 Vi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 302 (310)
|+.++.|||.|++|+.+++++|||||+|||+|++++||...+++|+++++++.+|+.+.++++.+|++|+|++++.++.
T Consensus 243 VV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~~~~~~~~~~~s~~~~~~m~g~~~~~~~~~ 322 (330)
T 2yzr_A 243 VVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDKPDIVAEVSKNLGEAMKGIDITQISEA 322 (330)
T ss_dssp SEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTTTCHHHHHHHHTTCCCCCCC---------
T ss_pred eEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhcccccCcCccccccChh
Confidence 9644889999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred hhhcccC
Q 021609 303 ERFASRS 309 (310)
Q Consensus 303 ~~~~~~~ 309 (310)
+|++.|.
T Consensus 323 ~~~~~~~ 329 (330)
T 2yzr_A 323 EKMQYRG 329 (330)
T ss_dssp -------
T ss_pred hHhhhcC
Confidence 4887763
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=304.68 Aligned_cols=281 Identities=60% Similarity=0.965 Sum_probs=243.2
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
++|.+++|+.+++|+|.++++.++++|+.|+++||++|+.|+..|+++++++|..+..+++.++++++.+++||+++.++
T Consensus 8 ~~~~~~~~~~~~~kggv~~d~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i 87 (297)
T 4adt_A 8 DSILLKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRI 87 (297)
T ss_dssp HHHHHHHHHHHTTTTCEEEEESSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEET
T ss_pred CcHHHHHhHHHHhcCCcccCCCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccC
Confidence 57899999999999999999999999999999999999888766678899999778888999999999999999999888
Q ss_pred CcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHH
Q 021609 102 GHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181 (310)
Q Consensus 102 ~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~ 181 (310)
++.+++|.++++|||.|..+..+++.++.+.+++++++++++++++|.+|+.++.+.|+|+|.++|+.+|+++.++++|.
T Consensus 88 ~~ide~qil~aaGAD~Id~s~~~~~~~li~~i~~~~~g~~vvv~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~ 167 (297)
T 4adt_A 88 GHFVEAQILEELKVDMLDESEVLTMADEYNHINKHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHI 167 (297)
T ss_dssp TCHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHH
T ss_pred CcHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHH
Confidence 88899999999999999555555677777777665678999999999999999999999999999988888888999999
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCH
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp 261 (310)
++....+|.++.+++|++..++....+++++++++++..++|++++++|||++++|+.+++++|||+|+|||+|++++||
T Consensus 168 ~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp 247 (297)
T 4adt_A 168 RTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENP 247 (297)
T ss_dssp HHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCH
T ss_pred HHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCH
Confidence 88765577778887777655544556789999999888889987557899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccchh
Q 021609 262 VKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKV 302 (310)
Q Consensus 262 ~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (310)
...+++|++++++|.+++.+.++++.+|++|+|++++.++-
T Consensus 248 ~~~~~~l~~ai~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 288 (297)
T 4adt_A 248 QKMASSIVMAVSNFNNPKILLNVSLGLGKAMHGNTKVSNKW 288 (297)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTTTCCCCCCCCCC-----
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHhhcccCCCCCCcccccc
Confidence 99999999999999999999999999999999999988764
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=261.89 Aligned_cols=288 Identities=64% Similarity=1.018 Sum_probs=215.2
Q ss_pred cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc
Q 021609 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR 100 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~ 100 (310)
.++|.+++++.+++++|++++++..++|+.++++|+++|.+|+|.|.+.+.++|+.++.+++.++++++.+++|++++++
T Consensus 7 ~~~~~~~~~~~~~~~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r 86 (305)
T 2nv1_A 7 TGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKAR 86 (305)
T ss_dssp --CHHHHHHHHHTTTTCEEEEESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CCcHHHHHHHHHHccCCeeecCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEeccc
Confidence 46899999999999999999888889999999999999877888888878778877888899999999999999999999
Q ss_pred cCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHH
Q 021609 101 IGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180 (310)
Q Consensus 101 ~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~ 180 (310)
+++.+.++.+.++|||+|+.+..+++.++.+.+..+.+++++++++++.+++.++.+.|+|+|.++||.+++.+.++..+
T Consensus 87 ~g~~~~~~~~~a~GAd~V~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~~a~~~Gad~V~~~G~~g~g~~~~~~~h 166 (305)
T 2nv1_A 87 IGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRH 166 (305)
T ss_dssp TTCHHHHHHHHHHTCSEEEECTTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCTHHHHHH
T ss_pred ccchHHHHHHHHCCCCEEEEeccCCHHHHHHHHHHhccCCcEEEEeCCHHHHHHHHHCCCCEEEeccccCccchHHHHhh
Confidence 87778899999999999986666666655544443456889999999999999999999999999998776777777777
Q ss_pred HHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~d 260 (310)
.+.....++.+..++.++++.+.......+++++++++..++||+.+++|||+|++|+.+++.+|||+|+|||+|++++|
T Consensus 167 ~rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~ 246 (305)
T 2nv1_A 167 MRKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDN 246 (305)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSC
T ss_pred hhhhhccchhhccccchhhhcccccccccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCC
Confidence 65422122223334444433222223556888888888778998755789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccchhh-hhccc
Q 021609 261 PVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVE-RFASR 308 (310)
Q Consensus 261 p~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 308 (310)
|...+++|++.++++.+++.+.++++.+|.+|.++++++++.| |++.|
T Consensus 247 p~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 295 (305)
T 2nv1_A 247 PAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQER 295 (305)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHTSCC---------------------
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHHHhhhhhcCCChhhcchHHHHHhh
Confidence 9999999999999999999999999999999999999999764 77665
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-29 Score=232.46 Aligned_cols=286 Identities=70% Similarity=1.092 Sum_probs=212.6
Q ss_pred eccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 19 TKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
-++++|.++.++.+++++++|.+++..++|+++.++|++++ +++ +.+.+.++++|+.+..+++.++++++.+++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~~~~Ga~~i-~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~ 83 (297)
T 2zbt_A 5 MEKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAV-MALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMA 83 (297)
T ss_dssp EEEEEEEECCSSSGGGTTEEEEEESSHHHHHHHHHHTCSEE-EECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEE
T ss_pred cccceehHHHHHHHHhhCCeeeeechHHHHHHHHHCCCcEE-EeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEE
Confidence 35889999999999999999999999999999999999987 553 4555556667776778899999999999999998
Q ss_pred ccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHH
Q 021609 98 KARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
+...++.++++.+.++|||+|..+...++.++.+.+++...++.+++++++.+++.++.+.|+|+|.++||.+.+.+.++
T Consensus 84 ~~~~~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~ 163 (297)
T 2zbt_A 84 KVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEA 163 (297)
T ss_dssp EEETTCHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCSSSCCTHHH
T ss_pred EeccCCHHHHHHHHHCCCCEEeeeCCCChHHHHHHHHHhCCCceEEeecCCHHHHHHHHHcCCCEEEEcccccCcchHHH
Confidence 87777778899999999999964443344444444433345788888999999999999999999999988666665555
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
..+.+.+...++.+...++....+........++.++++++..++|++++++|||++++|+.+++++|||+|++||+|++
T Consensus 164 ~~~~~~~~~~i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~ 243 (297)
T 2zbt_A 164 VRHARTMWKEIRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFK 243 (297)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGG
T ss_pred HhhHHHHHHHHHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhC
Confidence 55533322111111111111100000113455788888888778897534789999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccchhhhh
Q 021609 258 SGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDHKVERF 305 (310)
Q Consensus 258 a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (310)
++||...+++|++.++++.+++.+.++++.+|.+++++.+..++-|.+
T Consensus 244 ~~dp~~~~~~l~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 291 (297)
T 2zbt_A 244 SGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEER 291 (297)
T ss_dssp SSCHHHHHHHHHHHHHTTTCHHHHHHHHTTCCCCC-------------
T ss_pred CCCHHHHHHHHHHHHHHHhchHhhhHHHHhcCceeEEeechhcccccc
Confidence 999999999999999999999999999999999999999988766543
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=190.32 Aligned_cols=192 Identities=15% Similarity=0.228 Sum_probs=154.6
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|+|....+| ++|+.|+++||++|..| ++...|+|+ ++.++.+++.+++||+.|+++.+..++..+.++|
T Consensus 72 kG~i~~~~dp~~~A~~y~~~GA~~IsVl----td~~~f~Gs-----~~~L~~ir~~v~lPVl~Kdfi~d~~qi~ea~~~G 142 (272)
T 3tsm_A 72 KGLIRPDFDPPALAKAYEEGGAACLSVL----TDTPSFQGA-----PEFLTAARQACSLPALRKDFLFDPYQVYEARSWG 142 (272)
T ss_dssp TEESCSSCCHHHHHHHHHHTTCSEEEEE----CCSTTTCCC-----HHHHHHHHHTSSSCEEEESCCCSTHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHHCCCCEEEEe----ccccccCCC-----HHHHHHHHHhcCCCEEECCccCCHHHHHHHHHcC
Confidence 4777777777 79999999999999655 455667666 8999999999999999999987656677788999
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||+|+ ++..++..++.++++. +..++.+++++||.+|+.++.++|+++|+++++...
T Consensus 143 AD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~iIGinnr~l~--------------------- 201 (272)
T 3tsm_A 143 ADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNNRNLR--------------------- 201 (272)
T ss_dssp CSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCSEEEEECBCTT---------------------
T ss_pred CCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCEEEECCCCCc---------------------
Confidence 99995 7777777777776655 557899999999999999999999999999876421
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
++ ..+++...++.+.. ++|++ ++|||+|++|+.++.++|+|||+||++||+++||....++|+.
T Consensus 202 t~------------~~dl~~~~~L~~~ip~~~~vI--aesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~~~l~~ 267 (272)
T 3tsm_A 202 SF------------EVNLAVSERLAKMAPSDRLLV--GESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRALLT 267 (272)
T ss_dssp TC------------CBCTHHHHHHHHHSCTTSEEE--EESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHHHHHHH
T ss_pred cC------------CCChHHHHHHHHhCCCCCcEE--EECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHHHHHHh
Confidence 11 12233333333322 57887 7899999999999999999999999999999999988888765
Q ss_pred H
Q 021609 271 A 271 (310)
Q Consensus 271 ~ 271 (310)
.
T Consensus 268 g 268 (272)
T 3tsm_A 268 G 268 (272)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=191.45 Aligned_cols=197 Identities=23% Similarity=0.292 Sum_probs=152.8
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|+|....+| ++|+.|+++||++|..+ ++..+|.|+ ++.++++++.+++|+++++++-+...+..+.++|
T Consensus 65 ~g~i~~~~~p~~~A~~y~~~GA~~isvl----td~~~f~Gs-----~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~G 135 (272)
T 3qja_A 65 AGALATIADPAKLAQAYQDGGARIVSVV----TEQRRFQGS-----LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHG 135 (272)
T ss_dssp --------CHHHHHHHHHHTTCSEEEEE----CCGGGHHHH-----HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHHcCCCEEEEe----cChhhcCCC-----HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcC
Confidence 4666666676 78999999999999555 456777777 8899999999999999999876544578889999
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||+|+ +...+++.++.+++.. +..++.++++++|.+|+.++.++|+|+|+++++..+
T Consensus 136 AD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~Gad~IGv~~r~l~--------------------- 194 (272)
T 3qja_A 136 ADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLM--------------------- 194 (272)
T ss_dssp CSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEEESBCTT---------------------
T ss_pred CCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHCCCCEEEECCCccc---------------------
Confidence 99996 5666777666665554 457889999999999999999999999999865311
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
+ ...+++.+.++.+.. ++|++ ++|||+|++|+.++.++|+|||+||++||+++||...+++|+.
T Consensus 195 ~------------~~~dl~~~~~l~~~v~~~~pvV--aegGI~t~edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l~~ 260 (272)
T 3qja_A 195 T------------LDVDRDCFARIAPGLPSSVIRI--AESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVT 260 (272)
T ss_dssp T------------CCBCTTHHHHHGGGSCTTSEEE--EESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHT
T ss_pred c------------cccCHHHHHHHHHhCcccCEEE--EECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHh
Confidence 0 122344555665544 68888 7899999999999999999999999999999999999998887
Q ss_pred HHhccC
Q 021609 271 AVTHYS 276 (310)
Q Consensus 271 ~i~~~~ 276 (310)
+..+..
T Consensus 261 ~~~~~~ 266 (272)
T 3qja_A 261 AGTHPS 266 (272)
T ss_dssp TTTCSC
T ss_pred hhcCCc
Confidence 765543
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=180.06 Aligned_cols=187 Identities=17% Similarity=0.213 Sum_probs=147.2
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|+|.. .++ ++|+.|+++||++|..+ ++.+.|.|+ ++.++.+++.+++|+++|+++.+..++..+.++|
T Consensus 59 kg~i~~-~~p~~~A~~~~~~GA~~isvl----t~~~~f~G~-----~~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~G 128 (254)
T 1vc4_A 59 EGLIRE-VDPVEAALAYARGGARAVSVL----TEPHRFGGS-----LLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFG 128 (254)
T ss_dssp TCCCCS-CCHHHHHHHHHHTTCSEEEEE----CCCSSSCCC-----HHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTT
T ss_pred CCcCCC-CCHHHHHHHHHHcCCCEEEEe----cchhhhccC-----HHHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcC
Confidence 577777 676 89999999999998444 344566666 8999999999999999999987666677899999
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||+|+ ++..++ .++.+++.. +.+++.+++++|+.+|+.++.++|+++++++++.++.
T Consensus 129 AD~VlL~~~~l~-~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~gad~IGvn~~~l~~-------------------- 187 (254)
T 1vc4_A 129 ASAALLIVALLG-ELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRDLAT-------------------- 187 (254)
T ss_dssp CSEEEEEHHHHG-GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBCTTT--------------------
T ss_pred CCEEEECccchH-HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCCEEEEccccCcC--------------------
Confidence 99996 555555 666666653 3467888999999999999999999999998754321
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcC-----CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQA 267 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~ 267 (310)
+ ..+++.+.++.+.. ++|++ ++|||+|++|+.++.+ |+|||+||++||+++||...+++
T Consensus 188 -~------------~~dl~~~~~L~~~i~~~~~~~~vI--AegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~~d~~~~~~~ 251 (254)
T 1vc4_A 188 -L------------HINLETAPRLGRLARKRGFGGVLV--AESGYSRKEELKALEG-LFDAVLIGTSLMRAPDLEAALRE 251 (254)
T ss_dssp -C------------CBCTTHHHHHHHHHHHTTCCSEEE--EESCCCSHHHHHTTTT-TCSEEEECHHHHTSSCHHHHHHH
T ss_pred -C------------CCCHHHHHHHHHhCccccCCCeEE--EEcCCCCHHHHHHHHc-CCCEEEEeHHHcCCCCHHHHHHH
Confidence 1 12222333333221 57888 7899999999999999 99999999999999999988877
Q ss_pred HH
Q 021609 268 IV 269 (310)
Q Consensus 268 l~ 269 (310)
|+
T Consensus 252 l~ 253 (254)
T 1vc4_A 252 LV 253 (254)
T ss_dssp HH
T ss_pred Hh
Confidence 64
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-21 Score=171.08 Aligned_cols=195 Identities=23% Similarity=0.321 Sum_probs=149.3
Q ss_pred ecchhhhh--hCcccccCCCH------------HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC
Q 021609 27 KVGLAQML--RGGVIMDVVTP------------EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT 92 (310)
Q Consensus 27 ~~~~~~~~--~~g~i~~~~~~------------~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~ 92 (310)
..++.+.+ ++|+|.+|+.+ ++|++++++||.++. .. +++.++++|+.++
T Consensus 7 ~~~~~~~~~~~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~----------~~-------~~~~i~~ir~~v~ 69 (229)
T 3q58_A 7 LARLEQSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVR----------IE-------GIENLRTVRPHLS 69 (229)
T ss_dssp HHHHHHHHHHHCCEEEECCCCTTSTTCSHHHHHHHHHHHHHTTCSEEE----------EE-------SHHHHHHHGGGCC
T ss_pred HHHHHHHhhhcCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCcEEE----------EC-------CHHHHHHHHHhcC
Confidence 34666777 88999888743 579999999999972 11 1789999999999
Q ss_pred cceee---cc------ccC-cHHHHHHHHHcCCCEEE-eC-CCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhC
Q 021609 93 IPVMA---KA------RIG-HFVEAQILEAIGIDYVD-ES-EVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREG 159 (310)
Q Consensus 93 iPv~v---k~------~~~-~~~~a~~~~~aGad~Vi-~~-~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~G 159 (310)
+|++. ++ +++ +.++++.+.++|||.|+ .+ ....|..+.++++. +..++.++++++|.++++++.++|
T Consensus 70 ~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~G 149 (229)
T 3q58_A 70 VPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKG 149 (229)
T ss_dssp SCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT
T ss_pred CCEEEEEeecCCCCceEeCccHHHHHHHHHcCCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhCC
Confidence 99873 33 222 34678889999999995 33 22334444444433 235899999999999999999999
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
+|+|.++.+++++. + +...+++++++++++. ++||+ ++|||+|++|+.
T Consensus 150 ad~Ig~~~~g~t~~---------------------~--------~~~~~~~~li~~l~~~-~ipvI--A~GGI~t~~d~~ 197 (229)
T 3q58_A 150 IEFIGTTLSGYTGP---------------------I--------TPVEPDLAMVTQLSHA-GCRVI--AEGRYNTPALAA 197 (229)
T ss_dssp CSEEECTTTTSSSS---------------------C--------CCSSCCHHHHHHHHTT-TCCEE--EESSCCSHHHHH
T ss_pred CCEEEecCccCCCC---------------------C--------cCCCCCHHHHHHHHHc-CCCEE--EECCCCCHHHHH
Confidence 99998755444321 0 0124568889999886 89998 789999999999
Q ss_pred HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 240 MMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 240 ~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+++++|||+|+||++|++ |+..+++|.++++
T Consensus 198 ~~~~~GadgV~VGsai~~---p~~~~~~f~~~~~ 228 (229)
T 3q58_A 198 NAIEHGAWAVTVGSAITR---IEHICQWFSHAVK 228 (229)
T ss_dssp HHHHTTCSEEEECHHHHC---HHHHHHHHHHHHC
T ss_pred HHHHcCCCEEEEchHhcC---hHHHHHHHHHHHh
Confidence 999999999999999995 8888999988775
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-21 Score=171.30 Aligned_cols=190 Identities=15% Similarity=0.203 Sum_probs=150.9
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|.|..-.++ ++|+.|+++ |.+|..| ++.+.|+|+ ++.++.+++.+++||+.|+++.+...+..+..+|
T Consensus 54 kG~i~~~~~~~~iA~~y~~~-A~~IsVl----Td~~~F~gs-----~~dL~~ir~~v~lPvLrKDfi~~~~qi~ea~~~G 123 (251)
T 1i4n_A 54 AGDINADASLEDFIRMYDEL-ADAISIL----TEKHYFKGD-----PAFVRAARNLTCRPILAKDFYIDTVQVKLASSVG 123 (251)
T ss_dssp SCBSCTTCCHHHHHHHHHHH-CSEEEEE----CCCSSSCCC-----THHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHHh-CCceEEE----ecccccCCC-----HHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHcC
Confidence 3555555565 789999999 9999777 677888887 8999999999999999999886544555688899
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHh-CCCEEEEcCCCCCcchHHHHHHHHhhccceEee
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIRE-GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~-Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
||.|+ +...++..++.++++. +..|+.+++++||.+|+.++.++ |+++|+++++....
T Consensus 124 AD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~iIGinnr~l~t------------------- 184 (251)
T 1i4n_A 124 ADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRDLDT------------------- 184 (251)
T ss_dssp CSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBCTTT-------------------
T ss_pred CCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeCccccc-------------------
Confidence 99995 5555676777777665 56899999999999999999999 99999999864321
Q ss_pred cccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
+ ..+++...++.+.. +++++ ++|||+|++|+.++.++ +|+|+||++||+++||....++|+
T Consensus 185 --~------------~~d~~~~~~l~~~ip~~~~vI--aEsGI~t~edv~~~~~~-a~avLVG~aimr~~d~~~~~~~l~ 247 (251)
T 1i4n_A 185 --F------------EIKKNVLWELLPLVPDDTVVV--AESGIKDPRELKDLRGK-VNAVLVGTSIMKAENPRRFLEEMR 247 (251)
T ss_dssp --C------------CBCTTHHHHHGGGSCTTSEEE--EESCCCCGGGHHHHTTT-CSEEEECHHHHHCSSHHHHHHHHH
T ss_pred --C------------CCCHHHHHHHHHhCCCCCEEE--EeCCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHH
Confidence 1 12233333343332 35666 89999999999999999 999999999999999998888876
Q ss_pred HH
Q 021609 270 RA 271 (310)
Q Consensus 270 ~~ 271 (310)
..
T Consensus 248 ~~ 249 (251)
T 1i4n_A 248 AW 249 (251)
T ss_dssp HH
T ss_pred hC
Confidence 64
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=168.12 Aligned_cols=174 Identities=16% Similarity=0.193 Sum_probs=138.4
Q ss_pred CH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 44 TP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 44 ~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
+| +.|+ +.++||.+|+.| ++.+.|+|+ ++.++++++.+++|++.||++-+..++..+..+|||+|+ +.
T Consensus 65 dp~~iA~-~~~~GA~aiSVL----Td~~~F~Gs-----~~~L~~vr~~v~lPvLrKDFiid~yQI~eAr~~GADaILLI~ 134 (258)
T 4a29_A 65 DPIEYAK-FMERYAVGLSIT----TEEKYFNGS-----YETLRKIASSVSIPILMSDFIVKESQIDDAYNLGADTVLLIV 134 (258)
T ss_dssp CHHHHHH-HHTTTCSEEEEE----CCSTTTCCC-----HHHHHHHHTTCSSCEEEESCCCSHHHHHHHHHHTCSEEEEEG
T ss_pred CHHHHHH-HHhCCCeEEEEe----CCCCCCCCC-----HHHHHHHHHhcCCCEeeccccccHHHHHHHHHcCCCeeehHH
Confidence 56 5565 556899999888 677889988 899999999999999999998754445555669999996 77
Q ss_pred CCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHH
Q 021609 122 EVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 122 ~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~ 200 (310)
..+++.++.++++. +..++.+++++||.+|..++.++|+++|+++++. +.+++
T Consensus 135 a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~iIGINNRn---------------------L~tf~----- 188 (258)
T 4a29_A 135 KILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIGIMSRD---------------------FETGE----- 188 (258)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTCSEEEECSBC---------------------TTTCC-----
T ss_pred hhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCCcEEEEeCCC---------------------ccccc-----
Confidence 77888777777665 5689999999999999999999999999999863 23322
Q ss_pred HhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 201 TFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 201 ~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
.+.+...++.... ++.++ +++||++++|+.++...|+|+++||++||+++||.
T Consensus 189 -------vdl~~t~~L~~~ip~~~~~V--sESGI~t~~dv~~l~~~G~~a~LVGealmr~~d~~ 243 (258)
T 4a29_A 189 -------INKENQRKLISMIPSNVVKV--AKLGISERNEIEELRKLGVNAFLISSSLMRNPEKI 243 (258)
T ss_dssp -------BCHHHHHHHHTTSCTTSEEE--EEESSCCHHHHHHHHHTTCCEEEECHHHHHCTTHH
T ss_pred -------cCHHHHHHHHhhCCCCCEEE--EcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCcHH
Confidence 2233333343332 34444 89999999999999999999999999999988873
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=9.8e-21 Score=168.65 Aligned_cols=195 Identities=23% Similarity=0.300 Sum_probs=148.4
Q ss_pred cchhhhh--hCcccccCCCH------------HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCc
Q 021609 28 VGLAQML--RGGVIMDVVTP------------EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTI 93 (310)
Q Consensus 28 ~~~~~~~--~~g~i~~~~~~------------~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~i 93 (310)
..+.+.+ ++|+|.+|+.+ ++|++++++||.++. .. +++.++++++.+++
T Consensus 8 ~~~~~~~~~~~~livscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~----------~~-------~~~~i~~ir~~v~~ 70 (232)
T 3igs_A 8 EQLDKNIAASGGLIVSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVR----------IE-------GIDNLRMTRSLVSV 70 (232)
T ss_dssp HHHHHHHHHHCCEEEECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEE----------EE-------SHHHHHHHHTTCCS
T ss_pred HHHHHHhhhcCCEEEEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEE----------EC-------CHHHHHHHHHhcCC
Confidence 4455666 78888888643 589999999999872 11 17899999999999
Q ss_pred ceee---cc------ccC-cHHHHHHHHHcCCCEEE-eCC-CCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCC
Q 021609 94 PVMA---KA------RIG-HFVEAQILEAIGIDYVD-ESE-VLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGA 160 (310)
Q Consensus 94 Pv~v---k~------~~~-~~~~a~~~~~aGad~Vi-~~~-~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Ga 160 (310)
|++. ++ .++ +.++++.+.++|||.|+ .+. ...|..+.++++. +..++.++++++|.++++++.++|+
T Consensus 71 Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~Ga 150 (232)
T 3igs_A 71 PIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRLGA 150 (232)
T ss_dssp CEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHTTC
T ss_pred CEEEEEeecCCCcceEeCccHHHHHHHHHcCCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhCCC
Confidence 9873 22 222 34678889999999995 332 2334444444433 2358899999999999999999999
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
|+|.++.++++.. + +...+++++++++++. ++|++ ++|||+|++|+.+
T Consensus 151 d~Ig~~~~g~t~~---------------------~--------~~~~~~~~~i~~l~~~-~ipvI--A~GGI~t~~d~~~ 198 (232)
T 3igs_A 151 DIIGTTMSGYTTP---------------------D--------TPEEPDLPLVKALHDA-GCRVI--AEGRYNSPALAAE 198 (232)
T ss_dssp SEEECTTTTSSSS---------------------S--------CCSSCCHHHHHHHHHT-TCCEE--EESCCCSHHHHHH
T ss_pred CEEEEcCccCCCC---------------------C--------CCCCCCHHHHHHHHhc-CCcEE--EECCCCCHHHHHH
Confidence 9998754443321 0 0124568888998886 89998 7899999999999
Q ss_pred HHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 241 ~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
++++|||+|+||++|++ |+..+++|++.+++
T Consensus 199 ~~~~GadgV~VGsal~~---p~~~~~~~~~~i~~ 229 (232)
T 3igs_A 199 AIRYGAWAVTVGSAITR---LEHICGWYNDALKK 229 (232)
T ss_dssp HHHTTCSEEEECHHHHC---HHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEehHhcC---HHHHHHHHHHHHHH
Confidence 99999999999999995 89999999888864
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-19 Score=174.99 Aligned_cols=218 Identities=18% Similarity=0.211 Sum_probs=163.4
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+|+|....++ ++|+.|+++ |.+|+.| ++.+.|+|+ ++.++.+++.+++||+.|+++.+...+..+..+|
T Consensus 61 kG~i~~~~~~~~iA~~y~~~-A~~IsvL----Td~~~F~gs-----~~dL~~vr~~v~lPvLrKDFI~d~~Qi~ea~~~G 130 (452)
T 1pii_A 61 KGVIRDDFDPARIAAIYKHY-ASAISVL----TDEKYFQGS-----FNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQ 130 (452)
T ss_dssp TEESCSSCCHHHHHHHHTTT-CSEEEEE----CCSTTTCCC-----TTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHhh-CcEEEEE----ecccccCCC-----HHHHHHHHHhcCCCeEEEeccCCHHHHHHHHHcC
Confidence 4666655566 789999998 9999777 677888887 8999999999999999999987544455578899
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeec
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
||.|+ +...++..++.++++. +..++.+++++||.+|+.++.++|+++|+++++.. .
T Consensus 131 AD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lga~iIGinnr~L---------------------~ 189 (452)
T 1pii_A 131 ADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNRDL---------------------R 189 (452)
T ss_dssp CSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESEET---------------------T
T ss_pred CCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCCCCEEEEeCCCC---------------------C
Confidence 99995 6666776677776655 55799999999999999999999999999998643 2
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+++. +.....++.+.+.. +++++ ++|||+|++|+.++.++ +++|+||++||+++||....++|+..-
T Consensus 190 t~~~--------dl~~~~~L~~~ip~--~~~vI--aEsGI~t~edv~~~~~~-a~avLVGealmr~~d~~~~~~~l~~~~ 256 (452)
T 1pii_A 190 DLSI--------DLNRTRELAPKLGH--NVTVI--SESGINTYAQVRELSHF-ANGFLIGSALMAHDDLHAAVRRVLLGE 256 (452)
T ss_dssp TTEE--------CTHHHHHHHHHHCT--TSEEE--EESCCCCHHHHHHHTTT-CSEEEECHHHHTCSCHHHHHHHHHHCS
T ss_pred CCCC--------CHHHHHHHHHhCCC--CCeEE--EECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHHHHh
Confidence 2111 11111233333322 45676 89999999999999999 999999999999999999888887543
Q ss_pred hccC--ChhhhhhhhhhcccchhcccC
Q 021609 273 THYS--DPEVLAEVSCGLGEAMVGLNL 297 (310)
Q Consensus 273 ~~~~--~~~~~~~~~~~~~~~~~~~~~ 297 (310)
.+.+ ....-....-..|-.+.|+-.
T Consensus 257 ~KICGit~~eda~~a~~~Gad~iGfIf 283 (452)
T 1pii_A 257 NKVCGLTRGQDAKAAYDAGAIYGGLIF 283 (452)
T ss_dssp CEECCCCSHHHHHHHHHHTCSEEEEEC
T ss_pred ccccCCCcHHHHHHHHhcCCCEEEeec
Confidence 3322 222223444566777777763
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-17 Score=143.22 Aligned_cols=192 Identities=21% Similarity=0.253 Sum_probs=140.5
Q ss_pred hhCcccccCCCH------------HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee---c
Q 021609 34 LRGGVIMDVVTP------------EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA---K 98 (310)
Q Consensus 34 ~~~g~i~~~~~~------------~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v---k 98 (310)
|++|+|++||-+ ++|++++++|++++ .+ . .++.++++++.+++|++. +
T Consensus 3 ~~~~~~~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i-~~-------~---------~~~~i~~i~~~~~~pv~~~~~~ 65 (223)
T 1y0e_A 3 LPHGLIVSCQALPDEPLHSSFIMSKMALAAYEGGAVGI-RA-------N---------TKEDILAIKETVDLPVIGIVKR 65 (223)
T ss_dssp SCSEEEEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEE-EE-------E---------SHHHHHHHHHHCCSCEEEECBC
T ss_pred cCCCeEEEecCCCCCCCCCCccHHHHHHHHHHCCCeee-cc-------C---------CHHHHHHHHHhcCCCEEeeecc
Confidence 567777777521 67999999999987 32 1 168899999999999952 1
Q ss_pred c------cc-CcHHHHHHHHHcCCCEEE-eCCCC-----CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEE
Q 021609 99 A------RI-GHFVEAQILEAIGIDYVD-ESEVL-----TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRT 165 (310)
Q Consensus 99 ~------~~-~~~~~a~~~~~aGad~Vi-~~~~~-----~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v 165 (310)
+ .+ .+.+.++.+.++|+|.|. .+... ...++.+.+++..++++++++++|.+++.++.+.|+|+|.+
T Consensus 66 ~~~~~~~~i~~~~~~i~~~~~~Gad~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~G~d~i~~ 145 (223)
T 1y0e_A 66 DYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGT 145 (223)
T ss_dssp CCTTCCCCBSCSHHHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEEC
T ss_pred CCCccccccCCcHHHHHHHHhCCCCEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCCCHHHHHHHHHcCCCEEEe
Confidence 1 11 134678889999999995 43332 23466667766435788899999999999999999999987
Q ss_pred cCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC
Q 021609 166 KGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG 245 (310)
Q Consensus 166 ~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G 245 (310)
...++++. +.+. ....+.++.++++++..++||+ ++|||++++|+.+++++|
T Consensus 146 ~~~g~t~~---------------------~~~~-----~~~~~~~~~~~~~~~~~~ipvi--a~GGI~~~~~~~~~~~~G 197 (223)
T 1y0e_A 146 TLHGYTSY---------------------TQGQ-----LLYQNDFQFLKDVLQSVDAKVI--AEGNVITPDMYKRVMDLG 197 (223)
T ss_dssp TTTTSSTT---------------------STTC-----CTTHHHHHHHHHHHHHCCSEEE--EESSCCSHHHHHHHHHTT
T ss_pred CCCcCcCC---------------------CCCC-----CCCcccHHHHHHHHhhCCCCEE--EecCCCCHHHHHHHHHcC
Confidence 65443321 0000 0012236678888877789998 789999999999999999
Q ss_pred CCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 246 CDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 246 adgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
||+|++||+|++ |...++.|++.++
T Consensus 198 ad~v~vG~al~~---p~~~~~~~~~~~~ 222 (223)
T 1y0e_A 198 VHCSVVGGAITR---PKEITKRFVQVME 222 (223)
T ss_dssp CSEEEECHHHHC---HHHHHHHHHHTTC
T ss_pred CCEEEEChHHcC---cHHHHHHHHHHhc
Confidence 999999999996 8888888876553
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=148.12 Aligned_cols=181 Identities=16% Similarity=0.157 Sum_probs=132.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCC-------C----CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGV-------A----RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~-------~----~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
+.++.+.++|+++| +|. .+..+ . +......++++++.+++|++++++ .+.+.+.|
T Consensus 47 ~~~~~al~~Gv~~v-qlR-------~K~~~~~~~~~~l~~~~~~~~a~~l~~l~~~~~~~liInd~------~~lA~~~g 112 (243)
T 3o63_A 47 QFAEAALAGGVDII-QLR-------DKGSPGELRFGPLQARDELAACEILADAAHRYGALFAVNDR------ADIARAAG 112 (243)
T ss_dssp HHHHHHHHTTCSEE-EEC-------CTTCHHHHHHCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC------HHHHHHHT
T ss_pred HHHHHHHHCCCCEE-EEc-------cCCCCccccccCCCHHHHHHHHHHHHHHHHhhCCEEEEeCH------HHHHHHhC
Confidence 67778889999976 873 22200 0 011123455556678999998875 34577899
Q ss_pred CCEEE-eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecc
Q 021609 115 IDYVD-ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
||+|. ...+++..++.+. .+.+..++++++|.+|+.++.+.|+|||.+++...|.
T Consensus 113 AdGVHLg~~dl~~~~~r~~---~~~~~~iG~S~ht~~Ea~~A~~~GaDyI~vgpvf~T~--------------------- 168 (243)
T 3o63_A 113 ADVLHLGQRDLPVNVARQI---LAPDTLIGRSTHDPDQVAAAAAGDADYFCVGPCWPTP--------------------- 168 (243)
T ss_dssp CSEEEECTTSSCHHHHHHH---SCTTCEEEEEECSHHHHHHHHHSSCSEEEECCSSCCC---------------------
T ss_pred CCEEEecCCcCCHHHHHHh---hCCCCEEEEeCCCHHHHHHHhhCCCCEEEEcCccCCC---------------------
Confidence 99995 6666766666544 3567889999999999999999999999986522221
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
++.. .....++.++++++. .++|++ |.||| +++++.+++++||+||+|||+|++++||...+++|.+.
T Consensus 169 -tK~~------~~~~gl~~l~~~~~~~~~~iPvv--AiGGI-~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~ 238 (243)
T 3o63_A 169 -TKPG------RAAPGLGLVRVAAELGGDDKPWF--AIGGI-NAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSA 238 (243)
T ss_dssp -C-----------CCCHHHHHHHHTC---CCCEE--EESSC-CTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHH
T ss_pred -CCCC------cchhhHHHHHHHHHhccCCCCEE--EecCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHH
Confidence 1100 012347778888775 489999 55999 89999999999999999999999999999999999887
Q ss_pred Hhc
Q 021609 272 VTH 274 (310)
Q Consensus 272 i~~ 274 (310)
+++
T Consensus 239 ~~~ 241 (243)
T 3o63_A 239 LTA 241 (243)
T ss_dssp HHT
T ss_pred HHh
Confidence 764
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.2e-17 Score=145.89 Aligned_cols=194 Identities=16% Similarity=0.170 Sum_probs=132.8
Q ss_pred hhhhhhCcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHH
Q 021609 30 LAQMLRGGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQ 108 (310)
Q Consensus 30 ~~~~~~~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~ 108 (310)
.++++++|....-.++ +.++.++++|+++|...++ ... +.....+.+.++++++.+++|++++..+...++++
T Consensus 17 ~~v~~~~g~~~~~~~~~~~a~~~~~~Ga~~i~v~d~-----~~~-~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~ 90 (266)
T 2w6r_A 17 FMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSI-----DRD-GTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFL 90 (266)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEET-----TTS-SCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHH
T ss_pred EEEEEcCCeeccCCCHHHHHHHHHHCCCCEEEEEec-----Ccc-cCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence 4566677765444444 7899999999999822221 110 11123458999999999999999998877777888
Q ss_pred HHHHcCCCEEE-eCCCC----CchhHHHHHHhcC--CC-CcEEEecC-------------------CH-HHHHHHHHhCC
Q 021609 109 ILEAIGIDYVD-ESEVL----TPADEENHINKHN--FR-IPFVCGCR-------------------NL-GEALRRIREGA 160 (310)
Q Consensus 109 ~~~~aGad~Vi-~~~~~----~~~~~~~~i~~~~--~~-i~~~v~~~-------------------t~-~ea~~~~~~Ga 160 (310)
.+.++|||+|+ .+..+ ++..+.+.++..+ .+ +.+.++++ +. +.+.++.+.|+
T Consensus 91 ~~~~~Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~ 170 (266)
T 2w6r_A 91 EAFLAGADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGA 170 (266)
T ss_dssp HHHHHTCSEEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTC
T ss_pred HHHHcCCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCC
Confidence 88999999997 55555 4556666554444 22 44556652 33 44577778899
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
+.|.+++....+. ..+.++++++++++..++|++ ++|||++++|+.+
T Consensus 171 ~~i~~t~~~~~g~-------------------------------~~g~~~~~i~~l~~~~~ipvi--a~GGI~~~ed~~~ 217 (266)
T 2w6r_A 171 GEILLTSIDRDGT-------------------------------KSGYDTEMIRFVRPLTTLPII--ASGGAGKMEHFLE 217 (266)
T ss_dssp SEEEEEETTTTTT-------------------------------CSCCCHHHHHHHGGGCCSCEE--EESCCCSHHHHHH
T ss_pred CEEEEEeecCCCC-------------------------------cCCCCHHHHHHHHHHcCCCEE--EeCCCCCHHHHHH
Confidence 9888764321110 124468899999988899998 7899999999999
Q ss_pred HHHcCCCEEEEccccccCCCHH
Q 021609 241 MMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 241 ~l~~GadgV~VGsai~~a~dp~ 262 (310)
++++|||||+|||+|++.+++.
T Consensus 218 ~~~~Gadgv~vgsal~~~~~~~ 239 (266)
T 2w6r_A 218 AFLAGADAALAASVFHFREIDM 239 (266)
T ss_dssp HHHHTCSEEEESTTTC------
T ss_pred HHHcCCHHHHccHHHHcCCCCH
Confidence 9999999999999999866443
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=142.89 Aligned_cols=199 Identities=20% Similarity=0.204 Sum_probs=136.1
Q ss_pred eecchhhhhhCc-ccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc
Q 021609 26 VKVGLAQMLRGG-VIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH 103 (310)
Q Consensus 26 ~~~~~~~~~~~g-~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~ 103 (310)
++.|.++++.++ .+.+..++ +.++.++++|++++...++. . .+.....+.+.++++++.+++|+++..++..
T Consensus 13 ~~~g~~v~~~~~~~~~~~~d~~~~a~~~~~~Gad~i~v~d~~-----~-~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~ 86 (252)
T 1ka9_F 13 VHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDIS-----A-THEERAILLDVVARVAERVFIPLTVGGGVRS 86 (252)
T ss_dssp EETTEETTCCCSSCCSSTTCHHHHHHHHHHHTCSCEEEEECC-----S-STTCHHHHHHHHHHHHTTCCSCEEEESSCCS
T ss_pred EECCEEEEeecccCceecCCHHHHHHHHHHcCCCEEEEEcCC-----c-cccCccccHHHHHHHHHhCCCCEEEECCcCC
Confidence 344555544332 12223344 78999999999987322211 0 0111112356788999999999999998887
Q ss_pred HHHHHHHHHcCCCEEE-eCCCCC-chhHHHHHHhcCCC-CcEEEecC--------------------CHHHHHHHHHhCC
Q 021609 104 FVEAQILEAIGIDYVD-ESEVLT-PADEENHINKHNFR-IPFVCGCR--------------------NLGEALRRIREGA 160 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi-~~~~~~-~~~~~~~i~~~~~~-i~~~v~~~--------------------t~~ea~~~~~~Ga 160 (310)
.++++.+.++|||+|+ .+..++ +..+.+..+..+.+ +.+.++++ +.+.++++.+.|+
T Consensus 87 ~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~ 166 (252)
T 1ka9_F 87 LEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGA 166 (252)
T ss_dssp HHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCEEEEChHHHhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCC
Confidence 8899999999999996 333333 33344444444333 45666653 2566777888899
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
+.+.+++....+. ..+.++++++++++..++|++ ++|||++++|+.+
T Consensus 167 ~~i~~~~~~~~g~-------------------------------~~g~~~~~i~~l~~~~~ipvi--a~GGI~~~~d~~~ 213 (252)
T 1ka9_F 167 GEILLTSMDRDGT-------------------------------KEGYDLRLTRMVAEAVGVPVI--ASGGAGRMEHFLE 213 (252)
T ss_dssp CEEEEEETTTTTT-------------------------------CSCCCHHHHHHHHHHCSSCEE--EESCCCSHHHHHH
T ss_pred CEEEEecccCCCC-------------------------------cCCCCHHHHHHHHHHcCCCEE--EeCCCCCHHHHHH
Confidence 9877764321110 123468899999888899998 7899999999999
Q ss_pred HHHcCCCEEEEccccccCC-CHHH
Q 021609 241 MMQLGCDGVFVGSGVFKSG-DPVK 263 (310)
Q Consensus 241 ~l~~GadgV~VGsai~~a~-dp~~ 263 (310)
++++|||||++||+|++++ ++..
T Consensus 214 ~~~~Gadgv~vgsal~~~~~~~~~ 237 (252)
T 1ka9_F 214 AFQAGAEAALAASVFHFGEIPIPK 237 (252)
T ss_dssp HHHTTCSEEEESHHHHTTSSCHHH
T ss_pred HHHCCCHHHHHHHHHHcCCCCHHH
Confidence 9999999999999999987 4443
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=147.55 Aligned_cols=200 Identities=16% Similarity=0.150 Sum_probs=142.0
Q ss_pred eecchhhhhhCcccccC----CCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc
Q 021609 26 VKVGLAQMLRGGVIMDV----VTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR 100 (310)
Q Consensus 26 ~~~~~~~~~~~g~i~~~----~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~ 100 (310)
++.|.++++++|+..+. .++ +.++.++++|+++|...++. ..+.+ ...+.+.+++++ .+++|++++..
T Consensus 9 ~~~g~~vk~~~G~~~~~~~~~~~~~~~a~~~~~~Gad~i~v~d~~----~~~~~--~~~~~~~i~~i~-~~~ipvi~~Gg 81 (241)
T 1qo2_A 9 LFRGKVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLS----NAIEN--SGENLPVLEKLS-EFAEHIQIGGG 81 (241)
T ss_dssp EETTEEEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHH----HHHHC--CCTTHHHHHHGG-GGGGGEEEESS
T ss_pred eeCCEEEEEeccccccceecCcCHHHHHHHHHHcCCCEEEEeccc----ccccC--CchhHHHHHHHH-hcCCcEEEECC
Confidence 45677777777766554 355 78999999999988222211 00111 134578899998 88999999988
Q ss_pred cCcHHHHHHHHHcCCCEEE-eCCCCCchh-HHHHHHhcCCCCcEEEecC---------------CHHH-HHHHHHhCCCE
Q 021609 101 IGHFVEAQILEAIGIDYVD-ESEVLTPAD-EENHINKHNFRIPFVCGCR---------------NLGE-ALRRIREGAAM 162 (310)
Q Consensus 101 ~~~~~~a~~~~~aGad~Vi-~~~~~~~~~-~~~~i~~~~~~i~~~v~~~---------------t~~e-a~~~~~~Gad~ 162 (310)
+...++++.+.++|||+|+ .+..++.++ +.+. +..+..+.+.++++ +..+ ++++.+.|++.
T Consensus 82 i~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~-~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~ 160 (241)
T 1qo2_A 82 IRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSL-REIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEE 160 (241)
T ss_dssp CCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHH-HTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCE
T ss_pred CCCHHHHHHHHHCCCCEEEECchHhhChHHHHHH-HHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhCCCCE
Confidence 8878889999999999996 333333334 4444 44442355667773 5545 56677888888
Q ss_pred EEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH
Q 021609 163 IRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 163 V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l 242 (310)
|.+++.. +++. ..++++++++++++..++||+ ++|||++++|+.+++
T Consensus 161 i~~t~~~--------------------------~~g~-----~~g~~~~~i~~l~~~~~iPvi--a~GGI~~~~d~~~~~ 207 (241)
T 1qo2_A 161 IVHTEIE--------------------------KDGT-----LQEHDFSLTKKIAIEAEVKVL--AAGGISSENSLKTAQ 207 (241)
T ss_dssp EEEEETT--------------------------HHHH-----TCCCCHHHHHHHHHHHTCEEE--EESSCCSHHHHHHHH
T ss_pred EEEEeec--------------------------cccc-----CCcCCHHHHHHHHHhcCCcEE--EECCCCCHHHHHHHH
Confidence 8776532 1111 124568899999887899998 789999999999999
Q ss_pred Hc-----C-CCEEEEccccccCCCHHHHHH
Q 021609 243 QL-----G-CDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 243 ~~-----G-adgV~VGsai~~a~dp~~~a~ 266 (310)
+. | ||||+|||+|++.+.+...++
T Consensus 208 ~~~~~~~G~adgv~vgsal~~~~~~~~~~~ 237 (241)
T 1qo2_A 208 KVHTETNGLLKGVIVGRAFLEGILTVEVMK 237 (241)
T ss_dssp HHHHHTTTSEEEEEECHHHHTTSSCHHHHH
T ss_pred hcccccCCeEeEEEeeHHHHcCCCCHHHHH
Confidence 88 9 999999999999776654443
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-16 Score=140.95 Aligned_cols=202 Identities=18% Similarity=0.193 Sum_probs=136.8
Q ss_pred eecchhhhhhCc-ccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc
Q 021609 26 VKVGLAQMLRGG-VIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH 103 (310)
Q Consensus 26 ~~~~~~~~~~~g-~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~ 103 (310)
++.|.++++.++ ......++ +.++.++++|++++...+.. ..+. ....+.+.++++++.+++|++++..+..
T Consensus 12 ~~~g~~v~~~~~~~~~~~~d~~~~a~~~~~~Gad~i~v~d~~----~~~~--~~~~~~~~i~~i~~~~~ipvi~~ggI~~ 85 (253)
T 1thf_D 12 VKDGRVVKGSNFENLRDSGDPVELGKFYSEIGIDELVFLDIT----ASVE--KRKTMLELVEKVAEQIDIPFTVGGGIHD 85 (253)
T ss_dssp EETTEECCCSCCTTSSCTTCHHHHHHHHHHTTCCEEEEEESS----CSSS--HHHHHHHHHHHHHTTCCSCEEEESSCCS
T ss_pred EECCEEEEeecccceeeccCHHHHHHHHHHcCCCEEEEECCc----hhhc--CCcccHHHHHHHHHhCCCCEEEeCCCCC
Confidence 344555544432 11222354 78999999999998222211 0010 0112367888899889999999988877
Q ss_pred HHHHHHHHHcCCCEEE-eCCCC-CchhHHHHHHhcCCC-CcEEEecC-------------------C-HHHHHHHHHhCC
Q 021609 104 FVEAQILEAIGIDYVD-ESEVL-TPADEENHINKHNFR-IPFVCGCR-------------------N-LGEALRRIREGA 160 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi-~~~~~-~~~~~~~~i~~~~~~-i~~~v~~~-------------------t-~~ea~~~~~~Ga 160 (310)
.++++.+.++|||.|+ .+..+ .+..+.+.++..+.+ +.+.++++ + .+.+.++.+.|+
T Consensus 86 ~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~ 165 (253)
T 1thf_D 86 FETASELILRGADKVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGA 165 (253)
T ss_dssp HHHHHHHHHTTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCEEEEChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCC
Confidence 7889999999999996 33333 344455555444432 44566664 2 355677778899
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~ 240 (310)
+.+.++.....+. ..+.+++.++++++..++||+ ++|||++++|+.+
T Consensus 166 ~~i~~~~~~~~g~-------------------------------~~g~~~~~~~~l~~~~~ipvi--a~GGI~~~~d~~~ 212 (253)
T 1thf_D 166 GEILLTSIDRDGT-------------------------------KSGYDTEMIRFVRPLTTLPII--ASGGAGKMEHFLE 212 (253)
T ss_dssp SEEEEEETTTTTS-------------------------------CSCCCHHHHHHHGGGCCSCEE--EESCCCSHHHHHH
T ss_pred CEEEEEeccCCCC-------------------------------CCCCCHHHHHHHHHhcCCCEE--EECCCCCHHHHHH
Confidence 8877664321110 123468889999887899998 7899999999999
Q ss_pred HHHcCCCEEEEccccccCC-CHHHHHH
Q 021609 241 MMQLGCDGVFVGSGVFKSG-DPVKRAQ 266 (310)
Q Consensus 241 ~l~~GadgV~VGsai~~a~-dp~~~a~ 266 (310)
++++|||+|++||+|++++ +|....+
T Consensus 213 ~~~~Gadgv~vGsal~~~~~~~~~~~~ 239 (253)
T 1thf_D 213 AFLAGADAALAASVFHFREIDVRELKE 239 (253)
T ss_dssp HHHTTCSEEEESHHHHTTCSCHHHHHH
T ss_pred HHHcCChHHHHHHHHHcCCCCHHHHHH
Confidence 9999999999999999977 6554444
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=142.83 Aligned_cols=199 Identities=25% Similarity=0.237 Sum_probs=134.7
Q ss_pred ceeecchhhhhhCcccccCC---CH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecc
Q 021609 24 FSVKVGLAQMLRGGVIMDVV---TP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKA 99 (310)
Q Consensus 24 ~~~~~~~~~~~~~g~i~~~~---~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~ 99 (310)
+-++.|.++++.+|...+.+ ++ +.++.++++|++++ ++.. ....+.+. ..+ +.++++++.+++|++++.
T Consensus 10 idl~~g~~V~~~~g~~~~~~~~~d~~~~a~~~~~~Gad~i-~v~~---~d~~~~~~--~~~-~~i~~i~~~~~ipv~v~g 82 (244)
T 1vzw_A 10 VDVRDGQAVRLVHGESGTETSYGSPLEAALAWQRSGAEWL-HLVD---LDAAFGTG--DNR-ALIAEVAQAMDIKVELSG 82 (244)
T ss_dssp EEEETTEEBC--------CCBCCCHHHHHHHHHHTTCSEE-EEEE---HHHHHTSC--CCH-HHHHHHHHHCSSEEEEES
T ss_pred EEEECCEEEEeeccccccceecCCHHHHHHHHHHcCCCEE-EEec---CchhhcCC--ChH-HHHHHHHHhcCCcEEEEC
Confidence 34667888888877655443 55 78999999999998 4310 00111111 233 789999999999999998
Q ss_pred ccCcHHHHHHHHHcCCCEEE-eCCCCC-chhHHHHHHhcCCCCcEEEecC--------------CH-HHHHHHHHhCCCE
Q 021609 100 RIGHFVEAQILEAIGIDYVD-ESEVLT-PADEENHINKHNFRIPFVCGCR--------------NL-GEALRRIREGAAM 162 (310)
Q Consensus 100 ~~~~~~~a~~~~~aGad~Vi-~~~~~~-~~~~~~~i~~~~~~i~~~v~~~--------------t~-~ea~~~~~~Gad~ 162 (310)
.+...++++.+.++|||.|. .+..+. +..+.+.++..+..+.+.++++ +. +.+.++.+.|++.
T Consensus 83 gI~~~~~~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G~~~ 162 (244)
T 1vzw_A 83 GIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCAR 162 (244)
T ss_dssp SCCSHHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCC
T ss_pred CcCCHHHHHHHHHcCCCEEEECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCCCCE
Confidence 88777789999999999996 443333 4445555554443355566664 44 4457778889998
Q ss_pred EEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH
Q 021609 163 IRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 163 V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l 242 (310)
|.+++....+ . ..+.+++.++++++..++||+ ++|||++++|+.+++
T Consensus 163 i~~~~~~~~~--------------------------~-----~~g~~~~~~~~i~~~~~ipvi--a~GGI~~~~d~~~~~ 209 (244)
T 1vzw_A 163 YVVTDIAKDG--------------------------T-----LQGPNLELLKNVCAATDRPVV--ASGGVSSLDDLRAIA 209 (244)
T ss_dssp EEEEEC--------------------------------------CCCHHHHHHHHHTCSSCEE--EESCCCSHHHHHHHH
T ss_pred EEEeccCccc--------------------------c-----cCCCCHHHHHHHHHhcCCCEE--EECCCCCHHHHHHHH
Confidence 8776532111 0 123468889999888899998 789999999999999
Q ss_pred Hc---CCCEEEEccccccCCCHH
Q 021609 243 QL---GCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 243 ~~---GadgV~VGsai~~a~dp~ 262 (310)
++ |||+|++||+|++.+.+.
T Consensus 210 ~~~~~Gadgv~vG~al~~~~~~~ 232 (244)
T 1vzw_A 210 GLVPAGVEGAIVGKALYAKAFTL 232 (244)
T ss_dssp TTGGGTEEEEEECHHHHTTSSCH
T ss_pred hhccCCCceeeeeHHHHcCCCCH
Confidence 98 999999999999866443
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=142.90 Aligned_cols=197 Identities=20% Similarity=0.186 Sum_probs=139.0
Q ss_pred eeecchhhhhhCcccccCC---CH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc
Q 021609 25 SVKVGLAQMLRGGVIMDVV---TP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR 100 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~~~---~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~ 100 (310)
-++.|.++++.+|.+.+.+ ++ +.++.++++|+++| ++.. ....+.+. ... +.++++++.+++|++++..
T Consensus 10 d~~~g~~V~~~~g~~~~~~~~~d~~~~a~~~~~~Gad~i-~v~~---~d~~~~~~--~~~-~~i~~i~~~~~ipv~v~gg 82 (244)
T 2y88_A 10 NVVEGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWI-HLVD---LDAAFGRG--SNH-ELLAEVVGKLDVQVELSGG 82 (244)
T ss_dssp EEETTEEEEEETTEEEEEEEEEEHHHHHHHHHHTTCSEE-EEEE---HHHHTTSC--CCH-HHHHHHHHHCSSEEEEESS
T ss_pred EeECCEEEEeeccccccceecCCHHHHHHHHHHcCCCEE-EEEc---CcccccCC--ChH-HHHHHHHHhcCCcEEEECC
Confidence 4566777777776544332 44 78999999999998 3310 00112111 223 8899999999999999988
Q ss_pred cCcHHHHHHHHHcCCCEEE-eCCCCC-chhHHHHHHhcCCCCcEEEecC------------------C-HHHHHHHHHhC
Q 021609 101 IGHFVEAQILEAIGIDYVD-ESEVLT-PADEENHINKHNFRIPFVCGCR------------------N-LGEALRRIREG 159 (310)
Q Consensus 101 ~~~~~~a~~~~~aGad~Vi-~~~~~~-~~~~~~~i~~~~~~i~~~v~~~------------------t-~~ea~~~~~~G 159 (310)
+...++++.+.++|||.|+ .+..+. +..+.+.++..+..+.+.++++ + .+.+.++.+.|
T Consensus 83 i~~~~~~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G 162 (244)
T 2y88_A 83 IRDDESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEG 162 (244)
T ss_dssp CCSHHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHcCCCEEEECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCC
Confidence 8777789999999999996 443333 3344555544443344455554 2 56677788899
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
++.|.+++....+. ..+.+++.++++++..++||+ ++|||++++|+.
T Consensus 163 ~~~i~~~~~~~~~~-------------------------------~~g~~~~~~~~l~~~~~ipvi--a~GGI~~~~d~~ 209 (244)
T 2y88_A 163 CSRFVVTDITKDGT-------------------------------LGGPNLDLLAGVADRTDAPVI--ASGGVSSLDDLR 209 (244)
T ss_dssp CCCEEEEETTTTTT-------------------------------TSCCCHHHHHHHHTTCSSCEE--EESCCCSHHHHH
T ss_pred CCEEEEEecCCccc-------------------------------cCCCCHHHHHHHHHhCCCCEE--EECCCCCHHHHH
Confidence 99888876432110 123468888889887899998 789999999999
Q ss_pred HHHHc---CCCEEEEccccccCCCH
Q 021609 240 MMMQL---GCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 240 ~~l~~---GadgV~VGsai~~a~dp 261 (310)
+++++ |||+|++||+++..++.
T Consensus 210 ~~~~~~~~Gad~v~vG~al~~~~~~ 234 (244)
T 2y88_A 210 AIATLTHRGVEGAIVGKALYARRFT 234 (244)
T ss_dssp HHHTTGGGTEEEEEECHHHHTTSSC
T ss_pred HHHhhccCCCCEEEEcHHHHCCCcC
Confidence 99988 99999999999986544
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=136.96 Aligned_cols=208 Identities=16% Similarity=0.164 Sum_probs=142.6
Q ss_pred eeecchhhhhhCccccc----CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGVIMD----VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i~~----~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
-++.|.++++.+|.... ..+| ++|+.|.+.||+++ ++|+.. ..| ...+.+.++++.+.+.+|+.+
T Consensus 9 Dl~~G~vVrlv~G~~~~~~~~~~dP~~~a~~~~~~gad~lhvvDld~a------~~~--~~~~~~~i~~i~~~~~~pl~v 80 (243)
T 4gj1_A 9 DLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAGAKELHLVDLTGA------KDP--SKRQFALIEKLAKEVSVNLQV 80 (243)
T ss_dssp EEETTEEEEEECSSSCEEEECCCCHHHHHHHHHHHTCCEEEEEEHHHH------HCG--GGCCHHHHHHHHHHCCSEEEE
T ss_pred EEECCeEEEEEccCcCCCcEeCCCHHHHHHHHHHCCCCEEEEEecCcc------ccc--chhHHHHHHHHHHhcCCCeEe
Confidence 35678888888886443 4577 78999999999998 566422 111 134578999999999999999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCCchhHH-HHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcch
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLTPADEE-NHINKHNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNI 174 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~-~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~ 174 (310)
...+...++++.+.++|||.|+ .+..+..+++. +..+.++.. +.+.+++... +-.++.+++|.....
T Consensus 81 GGGIrs~e~~~~~l~~GadkVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~---------~~~~v~~~gw~~~~~- 150 (243)
T 4gj1_A 81 GGGIRSKEEVKALLDCGVKRVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILK---------EDYVVAVNAWQEASD- 150 (243)
T ss_dssp ESSCCCHHHHHHHHHTTCSEEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEES---------SSEEEC--------C-
T ss_pred ccccccHHHHHHHHHcCCCEEEEccccccCCchHHHHHhcccCceEEEEEEEEeC---------CCCEEEecCceeccc-
Confidence 9888888999999999999996 77777766664 444445544 4455554210 113567777743211
Q ss_pred HHHHHHHHhhccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 175 IEAVRHVRSVMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 175 ~~~~~~~r~~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
.+..+++++.... .-+++.+++|+++ .++++++++.+.+.. ++|++ ++||+++.+|+.++ +.+++|++
T Consensus 151 ~~~~~~~~~~~~~g~~eil~t~Id~DGt~-----~G~d~~l~~~l~~~~~~ipvi--asGGv~~~~Dl~~l-~~~~~gvi 222 (243)
T 4gj1_A 151 KKLMEVLDFYSNKGLKHILCTDISKDGTM-----QGVNVRLYKLIHEIFPNICIQ--ASGGVASLKDLENL-KGICSGVI 222 (243)
T ss_dssp CBHHHHHHHHHTTTCCEEEEEETTC----------CCCHHHHHHHHHHCTTSEEE--EESCCCSHHHHHHT-TTTCSEEE
T ss_pred chHHHHHHHHhhcCCcEEEeeeecccccc-----cCCCHHHHHHHHHhcCCCCEE--EEcCCCCHHHHHHH-HccCchhe
Confidence 2245555554333 6677788888763 577899999998764 79998 89999999999886 56799999
Q ss_pred EccccccC
Q 021609 251 VGSGVFKS 258 (310)
Q Consensus 251 VGsai~~a 258 (310)
+|++|+..
T Consensus 223 vg~Al~~g 230 (243)
T 4gj1_A 223 VGKALLDG 230 (243)
T ss_dssp ECHHHHTT
T ss_pred hHHHHHCC
Confidence 99999974
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.5e-15 Score=133.39 Aligned_cols=175 Identities=21% Similarity=0.322 Sum_probs=132.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee---ccc------cC-cHHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA---KAR------IG-HFVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v---k~~------~~-~~~~a~~~~~aGa 115 (310)
++|+++.++|++++ .++ .++.++.+++.+++|++. +++ ++ ..+.++.+.++|+
T Consensus 40 ~~a~~~~~~G~~~i-~~~----------------~~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Ga 102 (234)
T 1yxy_A 40 LMAKAAQEAGAVGI-RAN----------------SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNI 102 (234)
T ss_dssp HHHHHHHHHTCSEE-EEE----------------SHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCcEe-ecC----------------CHHHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCC
Confidence 58999999999987 431 167899999999999852 221 11 3467889999999
Q ss_pred CEEE-eCCCC------CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEE--EEcCCCCCcchHHHHHHHHhhcc
Q 021609 116 DYVD-ESEVL------TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMI--RTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 116 d~Vi-~~~~~------~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V--~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
|.|. ..... ...++.+.+++...++.++++++|.+++.++.+.|+|+| .+++... +.
T Consensus 103 d~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~Gad~i~~~v~g~~~-~~------------- 168 (234)
T 1yxy_A 103 AVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTP-YS------------- 168 (234)
T ss_dssp SEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSST-TS-------------
T ss_pred CEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEeeeccccCC-CC-------------
Confidence 9995 33221 235666777664457889999999999999999999999 4544321 10
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
. ....+.++.++++++. ++||+ ++|||+|++|+.+++++|||+|++||+|++ |...++
T Consensus 169 --------~--------~~~~~~~~~i~~~~~~-~ipvi--a~GGI~s~~~~~~~~~~Gad~v~vGsal~~---p~~~~~ 226 (234)
T 1yxy_A 169 --------R--------QEAGPDVALIEALCKA-GIAVI--AEGKIHSPEEAKKINDLGVAGIVVGGAITR---PKEIAE 226 (234)
T ss_dssp --------C--------CSSSCCHHHHHHHHHT-TCCEE--EESCCCSHHHHHHHHTTCCSEEEECHHHHC---HHHHHH
T ss_pred --------c--------CCCCCCHHHHHHHHhC-CCCEE--EECCCCCHHHHHHHHHCCCCEEEEchHHhC---hHHHHH
Confidence 0 0123457778888876 89998 789999999999999999999999999996 888888
Q ss_pred HHHHHHh
Q 021609 267 AIVRAVT 273 (310)
Q Consensus 267 ~l~~~i~ 273 (310)
+|++.++
T Consensus 227 ~l~~~~~ 233 (234)
T 1yxy_A 227 RFIEALK 233 (234)
T ss_dssp HHHHHTC
T ss_pred HHHHHHh
Confidence 8877654
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=139.70 Aligned_cols=203 Identities=17% Similarity=0.171 Sum_probs=149.3
Q ss_pred cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc
Q 021609 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR 100 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~ 100 (310)
...|++++|+++ +.+..+++++++.++.++|+.+++.....+. ....+.++++++.++.|+.++..
T Consensus 20 ~~~l~~~~Pii~----apM~gvs~~~la~av~~aGglG~i~~~~~~~----------~~l~~~i~~i~~~~~~p~gVnl~ 85 (326)
T 3bo9_A 20 TDLLEIEHPILM----GGMAWAGTPTLAAAVSEAGGLGIIGSGAMKP----------DDLRKAISELRQKTDKPFGVNII 85 (326)
T ss_dssp HHHHTCSSSEEE----CCCTTTSCHHHHHHHHHTTSBEEEECTTCCH----------HHHHHHHHHHHTTCSSCEEEEEE
T ss_pred HHhcCCCCCEEE----CCCCCCCCHHHHHHHHhCCCcEEeCCCCCCH----------HHHHHHHHHHHHhcCCCEEEEEe
Confidence 557888999998 5555799999999999999887743310000 00024566677767789998866
Q ss_pred c-C--cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHH
Q 021609 101 I-G--HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 101 ~-~--~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
. . ..+.++.+.++|+|.|...... +.++.+.++. .++++++.+.+.+++.++.+.|+|+|.+.++...++.
T Consensus 86 ~~~~~~~~~~~~~~~~g~d~V~l~~g~-p~~~~~~l~~--~g~~v~~~v~s~~~a~~a~~~GaD~i~v~g~~~GG~~--- 159 (326)
T 3bo9_A 86 LVSPWADDLVKVCIEEKVPVVTFGAGN-PTKYIRELKE--NGTKVIPVVASDSLARMVERAGADAVIAEGMESGGHI--- 159 (326)
T ss_dssp TTSTTHHHHHHHHHHTTCSEEEEESSC-CHHHHHHHHH--TTCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEEC---
T ss_pred ccCCCHHHHHHHHHHCCCCEEEECCCC-cHHHHHHHHH--cCCcEEEEcCCHHHHHHHHHcCCCEEEEECCCCCccC---
Confidence 5 1 2467788999999999744332 4666666654 4678888999999999999999999999875433320
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+..+++++++++++..++||+ ++|||++++|+.+++.+|||+|++||+|+.
T Consensus 160 ---------------------------G~~~~~~ll~~i~~~~~iPvi--aaGGI~~~~dv~~al~~GA~gV~vGs~~~~ 210 (326)
T 3bo9_A 160 ---------------------------GEVTTFVLVNKVSRSVNIPVI--AAGGIADGRGMAAAFALGAEAVQMGTRFVA 210 (326)
T ss_dssp ---------------------------CSSCHHHHHHHHHHHCSSCEE--EESSCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred ---------------------------CCccHHHHHHHHHHHcCCCEE--EECCCCCHHHHHHHHHhCCCEEEechHHHc
Confidence 112457788888877789998 789999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHh
Q 021609 258 SGDPVKRAQAIVRAVT 273 (310)
Q Consensus 258 a~dp~~~a~~l~~~i~ 273 (310)
+++. ...+.+++.+.
T Consensus 211 ~~e~-~~~~~~k~~~~ 225 (326)
T 3bo9_A 211 SVES-DVHPVYKEKIV 225 (326)
T ss_dssp BSSC-CSCHHHHHHHH
T ss_pred Cccc-cccHHHHHHHH
Confidence 7654 23334555553
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.9e-15 Score=137.12 Aligned_cols=207 Identities=18% Similarity=0.232 Sum_probs=148.2
Q ss_pred cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc
Q 021609 21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR 100 (310)
Q Consensus 21 ~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~ 100 (310)
...|++++|+++ +.+..+++++++.++.++|+.+++...... + .....+.++++++.++.|+.++..
T Consensus 9 ~~~l~~~~Pii~----apM~gvs~~~la~av~~aGglG~i~~~~~~--------s-~~~l~~~i~~i~~~~~~p~~v~l~ 75 (328)
T 2gjl_A 9 TETFGVEHPIMQ----GGMQWVGRAEMAAAVANAGGLATLSALTQP--------S-PEALAAEIARCRELTDRPFGVNLT 75 (328)
T ss_dssp HHHHTCSSSEEE----CCCTTTCSHHHHHHHHHTTSBCEEETTTSS--------S-HHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred HHHhCCCCCEEE----CCCCCCCcHHHHHHHHHCCCeEEeCCCCCC--------C-HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 346788999998 445679999999999999987764321000 0 000124566677777888888765
Q ss_pred cC-------cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcc
Q 021609 101 IG-------HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN 173 (310)
Q Consensus 101 ~~-------~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~ 173 (310)
.. ..+.++.+.++|+|.|...... +.++.+.+++. +++++..+.+.+++.++.+.|+|++.+.+....++
T Consensus 76 v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~-p~~~~~~l~~~--gi~vi~~v~t~~~a~~~~~~GaD~i~v~g~~~GG~ 152 (328)
T 2gjl_A 76 LLPTQKPVPYAEYRAAIIEAGIRVVETAGND-PGEHIAEFRRH--GVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGH 152 (328)
T ss_dssp ECCCSSCCCHHHHHHHHHHTTCCEEEEEESC-CHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEEEECTTCSBC
T ss_pred ccccccCccHHHHHHHHHhcCCCEEEEcCCC-cHHHHHHHHHc--CCCEEeeCCCHHHHHHHHHcCCCEEEEECCCCCcC
Confidence 53 1367789999999999643332 45666666553 67888889999999999999999999877543332
Q ss_pred hHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 174 IIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 174 ~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
. . .....++++++++++..++||+ ++|||++++|+.+++.+|||+|++||
T Consensus 153 ~--------------------G--------~~~~~~~~~l~~v~~~~~iPvi--aaGGI~~~~~v~~al~~GAdgV~vGs 202 (328)
T 2gjl_A 153 P--------------------G--------EDDIPGLVLLPAAANRLRVPII--ASGGFADGRGLVAALALGADAINMGT 202 (328)
T ss_dssp C--------------------C--------SSCCCHHHHHHHHHTTCCSCEE--EESSCCSHHHHHHHHHHTCSEEEESH
T ss_pred C--------------------C--------CccccHHHHHHHHHHhcCCCEE--EECCCCCHHHHHHHHHcCCCEEEECH
Confidence 0 0 0012457888888887899998 68999999999999999999999999
Q ss_pred ccccCCCHHHHHHHHHHHHhc
Q 021609 254 GVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 254 ai~~a~dp~~~a~~l~~~i~~ 274 (310)
+|+.+++. ...+.+++.+.+
T Consensus 203 ~~~~~~e~-~~~~~~k~~~~~ 222 (328)
T 2gjl_A 203 RFLATREC-PIHPAVKAAIRA 222 (328)
T ss_dssp HHHTSSSS-CSCHHHHHHHHH
T ss_pred HHHcCccc-cccHHHHHHHHh
Confidence 99997653 233345555543
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=135.19 Aligned_cols=204 Identities=19% Similarity=0.204 Sum_probs=147.6
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
..|++++|+++ +.+..+++++++.++.++|+.+++.....+. ....+.++++++.++.|+.++...
T Consensus 7 ~~l~~~~Pii~----apM~g~s~~~la~av~~aG~lG~i~~~~~~~----------~~~~~~i~~i~~~~~~p~gvnl~~ 72 (332)
T 2z6i_A 7 ELLKIDYPIFQ----GGMAWVADGDLAGAVSKAGGLGIIGGGNAPK----------EVVKANIDKIKSLTDKPFGVNIML 72 (332)
T ss_dssp HHHTCSSSEEE----CCCTTTCCHHHHHHHHHHTSBEEEECTTCCH----------HHHHHHHHHHHHHCCSCEEEEECT
T ss_pred HHhCCCCCEEe----CCCCCCCcHHHHHHHHhCCCcEEeCCCCCCH----------HHHHHHHHHHHHhcCCCEEEEecC
Confidence 45778899988 4445789999999999999876644310000 001245666676678899888765
Q ss_pred -C--cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 102 -G--HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 102 -~--~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
. +.+.++.+.++|+|+|..... .|.++.+.+++ .++++++.+.+.+++.++.+.|+|+|.+.|....++.
T Consensus 73 ~~~~~~~~~~~a~~~g~d~V~~~~g-~p~~~i~~l~~--~g~~v~~~v~~~~~a~~~~~~GaD~i~v~g~~~GG~~---- 145 (332)
T 2z6i_A 73 LSPFVEDIVDLVIEEGVKVVTTGAG-NPSKYMERFHE--AGIIVIPVVPSVALAKRMEKIGADAVIAEGMEAGGHI---- 145 (332)
T ss_dssp TSTTHHHHHHHHHHTTCSEEEECSS-CGGGTHHHHHH--TTCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEEC----
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCC-ChHHHHHHHHH--cCCeEEEEeCCHHHHHHHHHcCCCEEEEECCCCCCCC----
Confidence 2 245678899999999975444 35666677765 3678888899999999999999999999875322210
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+...++++++++++..++||+ ++|||++++++.+++.+|||+|++||+|+..
T Consensus 146 --------------------------g~~~~~~ll~~i~~~~~iPVi--aaGGI~~~~~~~~al~~GAdgV~vGs~~l~~ 197 (332)
T 2z6i_A 146 --------------------------GKLTTMTLVRQVATAISIPVI--AAGGIADGEGAAAGFMLGAEAVQVGTRFVVA 197 (332)
T ss_dssp --------------------------CSSCHHHHHHHHHHHCSSCEE--EESSCCSHHHHHHHHHTTCSEEEECHHHHTB
T ss_pred --------------------------CCccHHHHHHHHHHhcCCCEE--EECCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 113457788888887899998 7899999999999999999999999999986
Q ss_pred CCHHHHHHHHHHHHhcc
Q 021609 259 GDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 259 ~dp~~~a~~l~~~i~~~ 275 (310)
++. ...+.+++.+.+.
T Consensus 198 ~e~-~~~~~~k~~~~~~ 213 (332)
T 2z6i_A 198 KES-NAHPNYKEKILKA 213 (332)
T ss_dssp TTC-CSCHHHHHHHHHC
T ss_pred ccc-cccHHHHHHHHhC
Confidence 543 2233455555443
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=134.99 Aligned_cols=203 Identities=17% Similarity=0.162 Sum_probs=132.8
Q ss_pred ceeecchhhhhhCcccccC------------CCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHH
Q 021609 24 FSVKVGLAQMLRGGVIMDV------------VTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIK 88 (310)
Q Consensus 24 ~~~~~~~~~~~~~g~i~~~------------~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~ 88 (310)
+-++.|.++++.+|.+.+. .+| ++|+.|.+.||+++ ++|++ .+.+.+++++
T Consensus 7 iDl~~G~~V~~~~G~~~~~~~~~~~~~~~~~~dp~~~A~~~~~~Ga~~l~vvDL~~--------------~n~~~i~~i~ 72 (260)
T 2agk_A 7 IDLHNGEVKQIVGGTLTSKKEDVPKTNFVSQHPSSYYAKLYKDRDVQGCHVIKLGP--------------NNDDAAREAL 72 (260)
T ss_dssp EEEETTEECC--------------------CCCHHHHHHHHHHTTCTTCEEEEESS--------------SCHHHHHHHH
T ss_pred EEEECCEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCCEEEEEeCCC--------------CCHHHHHHHH
Confidence 3466777887777755433 356 78999999999987 56642 2478999999
Q ss_pred hhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCCCCCc-----hhH-HHHHHhcC-CCCcEEEecCCHHHHHHHHHhCC
Q 021609 89 QSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVLTP-----ADE-ENHINKHN-FRIPFVCGCRNLGEALRRIREGA 160 (310)
Q Consensus 89 ~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~~-----~~~-~~~i~~~~-~~i~~~v~~~t~~ea~~~~~~Ga 160 (310)
+.+.+|+++...+... +++.+. +|||.|+ .+..+.. +++ .+++++.+ -.+.+.++++.. +-+-
T Consensus 73 ~~~~~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~-------~~~g 143 (260)
T 2agk_A 73 QESPQFLQVGGGINDT-NCLEWL-KWASKVIVTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKT-------QDGR 143 (260)
T ss_dssp HHSTTTSEEESSCCTT-THHHHT-TTCSCEEECGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEE-------ETTE
T ss_pred hcCCceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeec-------CCCc
Confidence 9999999997666544 788888 9999996 5554443 444 45555444 235666666421 0001
Q ss_pred CEEEEcCCCC-Cc-chH-HHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC----CCCEEEeCCCCCC
Q 021609 161 AMIRTKGEAG-TG-NII-EAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG----RLPVVHFAAGGVA 233 (310)
Q Consensus 161 d~V~v~g~~~-~~-~~~-~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~----~iPVi~iA~GGI~ 233 (310)
..|.++||.. ++ ++. +..+...+. ...-+++..++|+++ .++++++++++++.+ ++||+ ++|||+
T Consensus 144 ~~V~~~gw~~~t~~~~~~e~a~~~~~~-a~~il~t~i~~dG~~-----~G~d~eli~~l~~~~~~~~~iPVI--asGGi~ 215 (260)
T 2agk_A 144 WIVAMNKWQTLTDLELNADTFRELRKY-TNEFLIHAADVEGLC-----GGIDELLVSKLFEWTKDYDDLKIV--YAGGAK 215 (260)
T ss_dssp EEEEETTTTEEEEEEESHHHHHHHTTT-CSEEEEEC------------CCCCHHHHHHHHHHHTTCSSCEEE--EESCCC
T ss_pred eEEEEcCCccccCccHHHHHHHHHHHh-cCEEEEEeeccccCc-----CCCCHHHHHHHHHhhcccCCceEE--EeCCCC
Confidence 2667777743 22 223 444444445 445566776766652 456899999999887 89998 899999
Q ss_pred CHHHHHHHHHc--CCCEEEEcccc--cc
Q 021609 234 TPADAAMMMQL--GCDGVFVGSGV--FK 257 (310)
Q Consensus 234 t~~d~~~~l~~--GadgV~VGsai--~~ 257 (310)
+++|+.++++. |+++|++||++ +.
T Consensus 216 s~ed~~~l~~~~~G~~gvivg~al~l~~ 243 (260)
T 2agk_A 216 SVDDLKLVDELSHGKVDLTFGSSLDIFG 243 (260)
T ss_dssp CTHHHHHHHHHHTTCEEEECCTTBGGGT
T ss_pred CHHHHHHHHHhcCCCCEEEeeCCHHHcC
Confidence 99999999987 99999999997 65
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-14 Score=141.47 Aligned_cols=183 Identities=15% Similarity=0.186 Sum_probs=132.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCC--CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVAR--MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~--~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~ 122 (310)
+.++++.++|+++| +|. .+..+.. ....+.++++++.+++|++++++. +.+.+.|+|+|. .++
T Consensus 29 ~~ve~al~~Gv~~v-QlR-------~K~~~~~~~~~~a~~l~~l~~~~~v~liIND~~------dlA~~~gAdGVHLgq~ 94 (540)
T 3nl6_A 29 GQVEAGLQNGVTLV-QIR-------EKDADTKFFIEEALQIKELCHAHNVPLIINDRI------DVAMAIGADGIHVGQD 94 (540)
T ss_dssp HHHHHHHHTTCSEE-EEC-------CSSSCTTHHHHHHHHHHHHHHHTTCCEEECSCS------HHHHHTTCSEEEECTT
T ss_pred HHHHHHHHCCCCEE-EEe-------cCCCCHHHHHHHHHHHHHHHHhcCCEEEEeCcH------HHHHHcCCCEEEEChh
Confidence 77888999999976 873 3221110 111234445566789999998753 357789999995 677
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhC---CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREG---AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~G---ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
+++..+.++.+ +.+..++++++|.+|+.++.+.| +|||.+..- +++.++.+.
T Consensus 95 dl~~~~ar~~l---g~~~iiG~S~ht~eea~~A~~~G~~~aDYv~~Gpv----------------------f~T~tK~~~ 149 (540)
T 3nl6_A 95 DMPIPMIRKLV---GPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVGTL----------------------FPTLTKKNP 149 (540)
T ss_dssp SSCHHHHHHHH---CTTSEEEEEECSHHHHHHHHHTCC--CCEEEESCC----------------------SCCCCCC--
T ss_pred hcCHHHHHHHh---CCCCEEEEECCCHHHHHHHHHcCCCCCCEEEEcCC----------------------CCCCCCCCc
Confidence 77666665543 56789999999999999999999 999998532 222221100
Q ss_pred HHhhhc-cCCcHHHHHHHhhc------CCCCEEEeCCCCCCCHHHHHHHHH--------cCCCEEEEccccccCCCHHHH
Q 021609 200 FTFAKK-IAAPYDLVMQTKQL------GRLPVVHFAAGGVATPADAAMMMQ--------LGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 200 ~~~~~~-~~~~~~~i~~i~~~------~~iPVi~iA~GGI~t~~d~~~~l~--------~GadgV~VGsai~~a~dp~~~ 264 (310)
. ....++.++++.+. .++|+++| ||| +++++.++++ +|+|||.|+|+|++++||...
T Consensus 150 -----~~~~~G~~~l~~i~~~~~~~~~~~iPvvAI--GGI-~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~dp~~a 221 (540)
T 3nl6_A 150 -----KKAPMGTAGAIRVLDALERNNAHWCRTVGI--GGL-HPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKS 221 (540)
T ss_dssp -------CCCHHHHHHHHHHHHHHTTCTTCEEEEE--SSC-CTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTCTTHHHH
T ss_pred -----CCCCCCHHHHHHHHHHHHhhccCCCCEEEE--cCC-CHHHHHHHHHhhcccccccCceEEEEeHHHhcCCCHHHH
Confidence 0 01124455555443 47999955 999 7999999998 899999999999999999999
Q ss_pred HHHHHHHHhcc
Q 021609 265 AQAIVRAVTHY 275 (310)
Q Consensus 265 a~~l~~~i~~~ 275 (310)
+++|.+.++++
T Consensus 222 ~~~l~~~~~~~ 232 (540)
T 3nl6_A 222 TKILRGLIDKT 232 (540)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHhC
Confidence 99999999874
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-14 Score=132.68 Aligned_cols=194 Identities=18% Similarity=0.217 Sum_probs=135.0
Q ss_pred cceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC
Q 021609 23 PFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG 102 (310)
Q Consensus 23 ~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~ 102 (310)
.+++..|++. +.|..++++++|.++.+.|..+++.-+..+. ...+.++++++...+|+.++...+
T Consensus 41 ~~~l~~Pii~----apM~~vt~~~lA~avA~~GGlgii~~~~s~e-----------~~~~~I~~vk~~~~~pvga~ig~~ 105 (361)
T 3khj_A 41 NVSLKIPLIS----SAMDTVTEHLMAVGMARLGGIGIIHKNMDME-----------SQVNEVLKVKNSGGLRVGAAIGVN 105 (361)
T ss_dssp SCEESSSEEE----CSSTTTCSHHHHHHHHHTTCEEEECSSSCHH-----------HHHHHHHHHHHTTCCCCEEEECTT
T ss_pred ccccCCCEEe----ecCCCCCcHHHHHHHHHcCCCeEEecCCCHH-----------HHHHHHHHHHhccCceEEEEeCCC
Confidence 5778889888 6677899999999998888776643221110 114567777777789998887665
Q ss_pred cHHHHHHHHHcCCCEEEe-CCCCCchh---HHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHH
Q 021609 103 HFVEAQILEAIGIDYVDE-SEVLTPAD---EENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 103 ~~~~a~~~~~aGad~Vi~-~~~~~~~~---~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
..+.++.+.++|+|.|+. +..-.+.. ..+.+++. .++++++ .+.|.++++++.++|+|+|.+....+ .++..
T Consensus 106 ~~e~a~~l~eaGad~I~ld~a~G~~~~~~~~i~~i~~~-~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~G--s~~~t 182 (361)
T 3khj_A 106 EIERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK-MNIDVIVGNVVTEEATKELIENGADGIKVGIGPG--SICTT 182 (361)
T ss_dssp CHHHHHHHHHTTCSEEEECCSCCSBHHHHHHHHHHHHH-CCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCC--TTCCH
T ss_pred HHHHHHHHHHcCcCeEEEeCCCCCcHHHHHHHHHHHHh-cCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCC--cCCCc
Confidence 568889999999999963 22222333 33333332 3777776 78999999999999999999843222 11100
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
+ .+ ... .+.+..+.++.+ ..++||+ |+|||++++|+.+++.+|||+|++||
T Consensus 183 ----r-------~~------------~g~g~p~~~~i~~v~~~~~~~~iPVI--A~GGI~~~~di~kala~GAd~V~vGs 237 (361)
T 3khj_A 183 ----R-------IV------------AGVGVPQITAIEKCSSVASKFGIPII--ADGGIRYSGDIGKALAVGASSVMIGS 237 (361)
T ss_dssp ----H-------HH------------TCBCCCHHHHHHHHHHHHHHHTCCEE--EESCCCSHHHHHHHHHHTCSEEEEST
T ss_pred ----c-------cc------------cCCCCCcHHHHHHHHHHHhhcCCeEE--EECCCCCHHHHHHHHHcCCCEEEECh
Confidence 0 00 011 233555555532 2479998 78999999999999999999999999
Q ss_pred ccccCC
Q 021609 254 GVFKSG 259 (310)
Q Consensus 254 ai~~a~ 259 (310)
+|+.++
T Consensus 238 ~~~~t~ 243 (361)
T 3khj_A 238 ILAGTE 243 (361)
T ss_dssp TTTTBT
T ss_pred hhhcCC
Confidence 999865
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3e-14 Score=124.50 Aligned_cols=174 Identities=20% Similarity=0.263 Sum_probs=126.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc-cCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR-IGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~-~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++.+.++|+++| +++ ... ....+.++++++.+++|++++.. +...+.++.+.++|+|+|....
T Consensus 23 ~~~~~~~~~G~~~i-~l~-------~~~----~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~~-- 88 (212)
T 2v82_A 23 AHVGAVIDAGFDAV-EIP-------LNS----PQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTPN-- 88 (212)
T ss_dssp HHHHHHHHHTCCEE-EEE-------TTS----TTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECSS--
T ss_pred HHHHHHHHCCCCEE-EEe-------CCC----hhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeCC--
Confidence 67889999999987 652 111 11146777777778888887432 1234678999999999997322
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
...++.+.++. .+..++++++|.+++.++.+.|+|+|.+++. .
T Consensus 89 ~~~~~~~~~~~--~g~~~~~g~~t~~e~~~a~~~G~d~v~v~~t---~-------------------------------- 131 (212)
T 2v82_A 89 IHSEVIRRAVG--YGMTVCPGCATATEAFTALEAGAQALKIFPS---S-------------------------------- 131 (212)
T ss_dssp CCHHHHHHHHH--TTCEEECEECSHHHHHHHHHTTCSEEEETTH---H--------------------------------
T ss_pred CCHHHHHHHHH--cCCCEEeecCCHHHHHHHHHCCCCEEEEecC---C--------------------------------
Confidence 23445555544 3555566789999999999999999987531 0
Q ss_pred ccCCcHHHHHHHhhcCC--CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC----CCHHHHHHHHHHHHhcc
Q 021609 205 KIAAPYDLVMQTKQLGR--LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS----GDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~~--iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a----~dp~~~a~~l~~~i~~~ 275 (310)
...++.++++++..+ +|++ +.|||+ ++|+.+++++|+++|++||+|+++ +||...+++|++.+++.
T Consensus 132 --~~g~~~~~~l~~~~~~~ipvi--a~GGI~-~~~i~~~~~~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~~~~~~~ 203 (212)
T 2v82_A 132 --AFGPQYIKALKAVLPSDIAVF--AVGGVT-PENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKAYREA 203 (212)
T ss_dssp --HHCHHHHHHHHTTSCTTCEEE--EESSCC-TTTHHHHHHHTCSEEEECTTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHhccCCCeEE--EeCCCC-HHHHHHHHHcCCCEEEEChHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 001455666666554 8998 679995 999999999999999999999997 68988888888877654
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=126.79 Aligned_cols=179 Identities=20% Similarity=0.190 Sum_probs=124.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeC-CCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDES-EVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~-~~~ 124 (310)
+.++.+.++|++++...+.. . .+.......+.++++++.+++|+++...+...++++.+.++|||+|... ..+
T Consensus 37 ~~a~~~~~~G~d~i~v~~~~----~--~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~ 110 (253)
T 1h5y_A 37 EMAVRYEEEGADEIAILDIT----A--APEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAV 110 (253)
T ss_dssp HHHHHHHHTTCSCEEEEECC----C--CTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCC----c--cccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHh
Confidence 78999999999987222110 0 0000111367888899889999999888777778899999999999633 222
Q ss_pred -CchhHHHHHHhcCCC-CcEEEecC--------------------CHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHH
Q 021609 125 -TPADEENHINKHNFR-IPFVCGCR--------------------NLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVR 182 (310)
Q Consensus 125 -~~~~~~~~i~~~~~~-i~~~v~~~--------------------t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r 182 (310)
.+..+.+..+..+.. +.+.++++ ..+.+..+.+.|+++|.+++...++.
T Consensus 111 ~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~--------- 181 (253)
T 1h5y_A 111 RNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT--------- 181 (253)
T ss_dssp HCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTT---------
T ss_pred hCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCC---------
Confidence 233344444443322 33343332 23557778889999998876432111
Q ss_pred hhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
..+..++.++++++..++|++ ++|||++++|+.+++++|||+|++||+|++.+++.
T Consensus 182 ----------------------~~~~~~~~i~~l~~~~~~pvi--a~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~ 237 (253)
T 1h5y_A 182 ----------------------GLGYDVELIRRVADSVRIPVI--ASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSI 237 (253)
T ss_dssp ----------------------CSCCCHHHHHHHHHHCSSCEE--EESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCH
T ss_pred ----------------------cCcCCHHHHHHHHHhcCCCEE--EeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCH
Confidence 123357778888877789998 78999999999999999999999999999977554
Q ss_pred H
Q 021609 263 K 263 (310)
Q Consensus 263 ~ 263 (310)
.
T Consensus 238 ~ 238 (253)
T 1h5y_A 238 A 238 (253)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=129.12 Aligned_cols=181 Identities=17% Similarity=0.171 Sum_probs=125.2
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHHhh-cCcceeeccccC------cH
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIKQS-VTIPVMAKARIG------HF 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~------~~ 104 (310)
.+.++.++++|||.| +|. |. |..++.. .|.+....++.++++|+. +++|+++....+ ..
T Consensus 35 ~~~~~~l~~~GaD~i-ElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e 113 (267)
T 3vnd_A 35 LKIIQTLVDNGADAL-ELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGID 113 (267)
T ss_dssp HHHHHHHHHTTCSSE-EEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHH
T ss_pred HHHHHHHHHcCCCEE-EECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHH
Confidence 367889999999987 554 21 2232222 344433447889999987 899998864432 35
Q ss_pred HHHHHHHHcCCCEEEeCCC--CCchhHHHHHHhcCCCCcEEEec-CCHHHHHHHHHhCCCEEEEcCC-CCCcchHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEV--LTPADEENHINKHNFRIPFVCGC-RNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRH 180 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~--~~~~~~~~~i~~~~~~i~~~v~~-~t~~ea~~~~~~Gad~V~v~g~-~~~~~~~~~~~~ 180 (310)
.+++.+.++|+|+++.++. .+..++.+.+++++.....++.. .+.+.+....+.+.++|.+-.. +.||.-
T Consensus 114 ~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~------ 187 (267)
T 3vnd_A 114 EFYTKAQAAGVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTE------ 187 (267)
T ss_dssp HHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEESCCCCCC---------
T ss_pred HHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEecCCCCCCc------
Confidence 6789999999999987764 23456677777777664444554 4556666677777777765322 223320
Q ss_pred HHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
... ....++++++++..++|++ .+|||++++++.+.+..|||||+|||+|++
T Consensus 188 -----------------------~~~~~~~~~~v~~vr~~~~~pv~--vGfGI~~~e~~~~~~~~gADgvVVGSaiv~ 240 (267)
T 3vnd_A 188 -----------------------SKAGEPIENILTQLAEFNAPPPL--LGFGIAEPEQVRAAIKAGAAGAISGSAVVK 240 (267)
T ss_dssp ----------------------------CHHHHHHHHHTTTCCCEE--ECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred -----------------------cCCcHHHHHHHHHHHHhcCCCEE--EECCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 001 2235788889888889998 689999999999889999999999999996
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-13 Score=128.62 Aligned_cols=196 Identities=14% Similarity=0.165 Sum_probs=131.6
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
..+++..|+++ +.+.+++++++|.++.++|.-+++.-+..+. ...+.++++++...+++.+....
T Consensus 41 ~~~~l~~Pii~----apM~~vs~~~lA~avA~aGGlg~i~~~~s~e-----------~~~~~i~~vk~~~~l~vga~vg~ 105 (366)
T 4fo4_A 41 KNIALNIPMVS----ASMDTVTEARLAIALAQEGGIGFIHKNMSIE-----------QQAAQVHQVKISGGLRVGAAVGA 105 (366)
T ss_dssp TTEEESSSEEE----CCCTTTCSHHHHHHHHHTTCEEEECSSSCHH-----------HHHHHHHHHHTTTSCCCEEECCS
T ss_pred cccccCCCEEe----CCCCCCChHHHHHHHHHcCCceEeecCCCHH-----------HHHHHHHHHHhcCceeEEEEecc
Confidence 35788999998 6677899999999999988877654321110 01345666665433444443322
Q ss_pred --CcHHHHHHHHHcCCCEEEe-CCCCCch---hHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcch
Q 021609 102 --GHFVEAQILEAIGIDYVDE-SEVLTPA---DEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNI 174 (310)
Q Consensus 102 --~~~~~a~~~~~aGad~Vi~-~~~~~~~---~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~ 174 (310)
...+.++.+.++|+|.|.. +..-.+. +.++.+++..+++++++ .+.|.++++++.++|+|+|.+....++.
T Consensus 106 ~~~~~~~~~~lieaGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~-- 183 (366)
T 4fo4_A 106 APGNEERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSI-- 183 (366)
T ss_dssp CTTCHHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTT--
T ss_pred ChhHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCC--
Confidence 3468899999999999853 2222233 33445555445777766 4899999999999999999983211111
Q ss_pred HHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 175 IEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 175 ~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
+.+ + .. ... .+.+..+.++.+ ..++||+ ++|||+++.|+.+++.+|||+|+
T Consensus 184 ~~t----r-------~~------------~g~g~p~~~~l~~v~~~~~~~~iPVI--A~GGI~~~~di~kala~GAd~V~ 238 (366)
T 4fo4_A 184 CTT----R-------IV------------TGVGVPQITAIADAAGVANEYGIPVI--ADGGIRFSGDISKAIAAGASCVM 238 (366)
T ss_dssp BCH----H-------HH------------HCCCCCHHHHHHHHHHHHGGGTCCEE--EESCCCSHHHHHHHHHTTCSEEE
T ss_pred CCc----c-------cc------------cCcccchHHHHHHHHHHHhhcCCeEE--EeCCCCCHHHHHHHHHcCCCEEE
Confidence 100 0 00 011 233555555543 4579998 78999999999999999999999
Q ss_pred EccccccCC
Q 021609 251 VGSGVFKSG 259 (310)
Q Consensus 251 VGsai~~a~ 259 (310)
+||+|+.++
T Consensus 239 vGs~f~~t~ 247 (366)
T 4fo4_A 239 VGSMFAGTE 247 (366)
T ss_dssp ESTTTTTBT
T ss_pred EChHhhcCC
Confidence 999999865
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-13 Score=128.13 Aligned_cols=210 Identities=18% Similarity=0.158 Sum_probs=139.8
Q ss_pred ecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC----
Q 021609 27 KVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG---- 102 (310)
Q Consensus 27 ~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~---- 102 (310)
++|+++ .++...++++++|.++.++|+.+++.....+. ....+.++++++.++.|+.++....
T Consensus 10 ~~Pii~---apMaggvs~~~la~av~~aGglG~i~~~~~s~----------~~l~~~i~~~~~~~~~p~gVnl~~~~~~~ 76 (369)
T 3bw2_A 10 PLPIVQ---APMAGGVSVPQLAAAVCEAGGLGFLAAGYKTA----------DGMYQEIKRLRGLTGRPFGVNVFMPQPEL 76 (369)
T ss_dssp SSSEEE---CCCTTTTSCHHHHHHHHHTTSBEEEECTTSCH----------HHHHHHHHHHHHHCCSCEEEEEECCCCCC
T ss_pred cCCEEe---CCCCCCCCcHHHHHHHHHCCCEEEcCCCCCCH----------HHHHHHHHHHHHhCCCCeEEEEecCCCCc
Confidence 789888 44433699999999999999888743310000 0002345555665666666653221
Q ss_pred ----------------------------------cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCC
Q 021609 103 ----------------------------------HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRN 148 (310)
Q Consensus 103 ----------------------------------~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t 148 (310)
..+.++.+.+.|+|.|..+...+..+..+.++. .+++++++++|
T Consensus 77 ~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~~~~i~~~~~--~g~~v~~~v~t 154 (369)
T 3bw2_A 77 AESGAVEVYAHQLAGEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPDREVIARLRR--AGTLTLVTATT 154 (369)
T ss_dssp ---CHHHHHHHHTHHHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCCHHHHHHHHH--TTCEEEEEESS
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHH--CCCeEEEECCC
Confidence 134568888999999964443334556666654 46788899999
Q ss_pred HHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcCCCCEEEe
Q 021609 149 LGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLGRLPVVHF 227 (310)
Q Consensus 149 ~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~iPVi~i 227 (310)
.++++++.+.|+|+|.+.++..+++. .+..++ . ..... ...+++++++++..++||+
T Consensus 155 ~~~a~~a~~~GaD~i~v~g~~~GGh~-----------------g~~~~~-~--~~~~~~~~~~~~l~~i~~~~~iPVi-- 212 (369)
T 3bw2_A 155 PEEARAVEAAGADAVIAQGVEAGGHQ-----------------GTHRDS-S--EDDGAGIGLLSLLAQVREAVDIPVV-- 212 (369)
T ss_dssp HHHHHHHHHTTCSEEEEECTTCSEEC-----------------CCSSCC-G--GGTTCCCCHHHHHHHHHHHCSSCEE--
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCcC-----------------CCcccc-c--ccccccccHHHHHHHHHHhcCceEE--
Confidence 99999999999999999765432220 000000 0 00000 1237788888877789998
Q ss_pred CCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 228 AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 228 A~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
+.|||.+++++.+++.+|||+|++||+++.++++.. .+.+++.+..
T Consensus 213 aaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~~~-~~~~k~~i~~ 258 (369)
T 3bw2_A 213 AAGGIMRGGQIAAVLAAGADAAQLGTAFLATDESGA-PGPHKRALTD 258 (369)
T ss_dssp EESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTCCC-CHHHHHHTTC
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEChHHhCCcccCc-cHHHHHHHHh
Confidence 679999999999999999999999999999776532 2345554443
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-14 Score=127.50 Aligned_cols=181 Identities=19% Similarity=0.141 Sum_probs=124.5
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHHhh-cCcceeecccc------CcH
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIKQS-VTIPVMAKARI------GHF 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~------~~~ 104 (310)
.+.++.++++|||.| +|. |. |..+++. +|.+....++.++++|+. .++|+++.... +..
T Consensus 37 ~~~~~~l~~~GaD~i-ElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~ 115 (271)
T 3nav_A 37 LAIMQTLIDAGADAL-ELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGID 115 (271)
T ss_dssp HHHHHHHHHTTCSSE-EEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHH
T ss_pred HHHHHHHHHcCCCEE-EECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHH
Confidence 367889999999987 654 21 2222211 244333456888999887 79999886433 335
Q ss_pred HHHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecC-CHHHHHHHHHhCCCEEEEcCC-CCCcchHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCR-NLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRH 180 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~-t~~ea~~~~~~Gad~V~v~g~-~~~~~~~~~~~~ 180 (310)
.+++.+.++|+|+++.++.. +..++.+.+++++.....++..+ +.+.+.+..+.+.++|.+-.. +.||.-
T Consensus 116 ~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs~~GvTG~~------ 189 (271)
T 3nav_A 116 DFYQRCQKAGVDSVLIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAE------ 189 (271)
T ss_dssp HHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECCCC------------
T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEeccCCCCcc------
Confidence 67899999999999877642 34456666666776655555544 456666777888888875332 223310
Q ss_pred HHhhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.... ...++++++++..++|++ .++||++++++.+.+..|||||+|||+|++
T Consensus 190 -----------------------~~~~~~~~~~v~~vr~~~~~Pv~--vGfGIst~e~~~~~~~~gADgvIVGSAiv~ 242 (271)
T 3nav_A 190 -----------------------TKANMPVHALLERLQQFDAPPAL--LGFGISEPAQVKQAIEAGAAGAISGSAVVK 242 (271)
T ss_dssp -------------------------CCHHHHHHHHHHHHTTCCCEE--ECSSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred -----------------------cCCchhHHHHHHHHHHhcCCCEE--EECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 0011 125678888888889998 689999999999889999999999999996
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-13 Score=128.86 Aligned_cols=206 Identities=15% Similarity=0.151 Sum_probs=123.7
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCccccc-------ccC-CC---------CCC---CCH
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIR-------SQG-GV---------ARM---SDP 81 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~-------~~~-G~---------~~~---~~~ 81 (310)
..++++.|+++ +.|..++++++|.++.++|.-+++.-+..+...+ ... |. ++. .++
T Consensus 37 ~~l~l~~PIi~----a~M~~Vs~~~lA~Ava~aGGlGvi~~~~~~e~~~~~i~~vk~~~~g~~~~P~~~~~nL~~~~~~~ 112 (400)
T 3ffs_A 37 KNVSLKIPLIS----SAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQVNEVLKVKNWISNLEKNESTPDQNLDKESTDG 112 (400)
T ss_dssp SSCEESSSEEE----CSCTTTCSSHHHHHHHTTTCEEEECSSSCHHHHHHHHHHHHCCC---------------------
T ss_pred cccCCCCCEEe----CCCCCcCcHHHHHHHHHCCCEEEeCCCCCHHHHHHHHHHHHhhccCcccCCCCccccccCCCCCH
Confidence 56889999999 6677899999999999999988765331111110 000 00 000 000
Q ss_pred HHHHHHHhhcCcceeecc-----------ccCcHHHHHHHHHcCCCEEEe--CCCCCch---hHHHHHHhcCCCCcEEE-
Q 021609 82 QLIKEIKQSVTIPVMAKA-----------RIGHFVEAQILEAIGIDYVDE--SEVLTPA---DEENHINKHNFRIPFVC- 144 (310)
Q Consensus 82 ~~i~~i~~~~~iPv~vk~-----------~~~~~~~a~~~~~aGad~Vi~--~~~~~~~---~~~~~i~~~~~~i~~~v- 144 (310)
+.++.+.+....|...++ .....+.++.+.++|+|.|+. +.. .+. +..+.+++. +++++++
T Consensus 113 ~~~~~~~~~~~~p~~~~d~~g~l~v~~~v~~~~~e~~~~lveaGvdvIvldta~G-~~~~~~e~I~~ik~~-~~i~Vi~g 190 (400)
T 3ffs_A 113 KDTKSNNNIDAYSNENLDNKGRLRVGAAIGVNEIERAKLLVEAGVDVIVLDSAHG-HSLNIIRTLKEIKSK-MNIDVIVG 190 (400)
T ss_dssp ----------CCTTCCBCTTSSBCCEEEECCC-CHHHHHHHHHTCSEEEECCSCC-SBHHHHHHHHHHHTT-CCCEEEEE
T ss_pred HHHHHHHHhhhCcchhhccccceeEEeecCCCHHHHHHHHHHcCCCEEEEeCCCC-CcccHHHHHHHHHhc-CCCeEEEe
Confidence 011222111112211111 111247889999999999963 333 233 344444432 3777775
Q ss_pred ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc---CC
Q 021609 145 GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL---GR 221 (310)
Q Consensus 145 ~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~---~~ 221 (310)
.+.|.++++++.++|+|+|.++ .+. ++++.. +.+.. ...+.+..+.++.+. .+
T Consensus 191 ~V~t~e~A~~a~~aGAD~I~vG-~g~-Gs~~~t-----------r~~~g-----------~g~p~~~al~~v~~~~~~~~ 246 (400)
T 3ffs_A 191 NVVTEEATKELIENGADGIKVG-IGP-GSICTT-----------RIVAG-----------VGVPQITAIEKCSSVASKFG 246 (400)
T ss_dssp EECSHHHHHHHHHTTCSEEEEC-C---------------------CCSC-----------BCCCHHHHHHHHHHHHTTTT
T ss_pred ecCCHHHHHHHHHcCCCEEEEe-CCC-CcCccc-----------ccccc-----------cchhHHHHHHHHHHHHHhcC
Confidence 7899999999999999999984 221 121100 01000 012345666666542 57
Q ss_pred CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 222 LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
+||| |+|||.+++|+.+++.+|||+|++||+|+.++
T Consensus 247 IPVI--A~GGI~~~~di~kalalGAd~V~vGt~f~~t~ 282 (400)
T 3ffs_A 247 IPII--ADGGIRYSGDIGKALAVGASSVMIGSILAGTE 282 (400)
T ss_dssp CCEE--EESCCCSHHHHHHHHTTTCSEEEECGGGTTBT
T ss_pred CCEE--ecCCCCCHHHHHHHHHcCCCEEEEChHHhcCC
Confidence 9998 88999999999999999999999999999865
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.8e-14 Score=138.67 Aligned_cols=203 Identities=15% Similarity=0.191 Sum_probs=119.8
Q ss_pred HHHHHHHHcCCcEE--EeccCCcccccccCCC-CCCCCHHHHHHHHhhcCcceeeccccCcH-----------HHHHHHH
Q 021609 46 EQARVAEEAGACAV--MALERVPADIRSQGGV-ARMSDPQLIKEIKQSVTIPVMAKARIGHF-----------VEAQILE 111 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~-~~~~~~~~i~~i~~~~~iPv~vk~~~~~~-----------~~a~~~~ 111 (310)
++|++|.+.||+++ ++|+.. ..|. ....+.+.++++++.+++|+++...+... +.++.+.
T Consensus 284 ~~A~~~~~~Ga~~l~~~dl~~~------~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l 357 (555)
T 1jvn_A 284 QLAQKYYQQGADEVTFLNITSF------RDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYF 357 (555)
T ss_dssp HHHHHHHHTTCSEEEEEEEC---------CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEeCCcc------ccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHH
Confidence 78999999999998 455321 0110 01223678899988899999987666543 5699999
Q ss_pred HcCCCEEE-eCCCC-------------CchhHHHHHHh-cCCC-CcEEEecCCH-----HHH----HHHH---HhCC---
Q 021609 112 AIGIDYVD-ESEVL-------------TPADEENHINK-HNFR-IPFVCGCRNL-----GEA----LRRI---REGA--- 160 (310)
Q Consensus 112 ~aGad~Vi-~~~~~-------------~~~~~~~~i~~-~~~~-i~~~v~~~t~-----~ea----~~~~---~~Ga--- 160 (310)
++|||.|+ .+..+ ...++.+.+.+ ++.. +.+.+|++.. ... .... ..|-
T Consensus 358 ~aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (555)
T 1jvn_A 358 RSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYC 437 (555)
T ss_dssp HHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEE
T ss_pred HcCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCcce
Confidence 99999995 33322 12344444433 4322 5556665310 000 0000 0010
Q ss_pred -CEEEEcCCCCCcchHHHHHHHHhhccc---eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHH
Q 021609 161 -AMIRTKGEAGTGNIIEAVRHVRSVMGD---IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA 236 (310)
Q Consensus 161 -d~V~v~g~~~~~~~~~~~~~~r~~~~~---~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~ 236 (310)
..|.++||..... .++.++.++.... .-+++..++|++ ..++++++++++++.+++||| |+|||++++
T Consensus 438 ~~~v~~~Gw~~~~~-~~~~e~a~~~~~~Ga~~il~t~~~~dG~-----~~G~d~~li~~l~~~~~iPVI--asGGi~s~~ 509 (555)
T 1jvn_A 438 WYQCTIKGGRESRD-LGVWELTRACEALGAGEILLNCIDKDGS-----NSGYDLELIEHVKDAVKIPVI--ASSGAGVPE 509 (555)
T ss_dssp EEEEEETTTTEEEE-EEHHHHHHHHHHTTCCEEEECCGGGTTT-----CSCCCHHHHHHHHHHCSSCEE--ECSCCCSHH
T ss_pred eEEEEEecCccCCC-CCHHHHHHHHHHcCCCEEEEeCCCCCCC-----CCCCCHHHHHHHHHhCCccEE--EECCCCCHH
Confidence 1233444421100 0122222222111 222233333332 135679999999998899998 899999999
Q ss_pred HHHHHHH-cCCCEEEEccccccCCCHH
Q 021609 237 DAAMMMQ-LGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 237 d~~~~l~-~GadgV~VGsai~~a~dp~ 262 (310)
|+.++++ +||++|++||+|+..+...
T Consensus 510 d~~~~~~~~G~~gvivg~a~~~~~~~~ 536 (555)
T 1jvn_A 510 HFEEAFLKTRADACLGAGMFHRGEFTV 536 (555)
T ss_dssp HHHHHHHHSCCSEEEESHHHHTTSCCH
T ss_pred HHHHHHHhcCChHHHHHHHHHcCCCCH
Confidence 9999997 8999999999999854433
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-13 Score=118.22 Aligned_cols=182 Identities=17% Similarity=0.244 Sum_probs=122.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCC-----CCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARM-----SDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~-----~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~ 120 (310)
+.++.+.++|++++ ++. ...++... ...+.++++.+.+++|++++. .++.+.++|+|+|..
T Consensus 35 ~~~~~~~~~G~~~i-~l~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~~------~~~~a~~~gad~v~l 100 (227)
T 2tps_A 35 TVVQKALKGGATLY-QFR-------EKGGDALTGEARIKFAEKAQAACREAGVPFIVND------DVELALNLKADGIHI 100 (227)
T ss_dssp HHHHHHHHHTCSEE-EEC-------CCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEES------CHHHHHHHTCSEEEE
T ss_pred HHHHHHHHCCCCEE-EEe-------cCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEcC------HHHHHHHcCCCEEEE
Confidence 67889999999987 653 11111100 012233344445678888753 346788899999964
Q ss_pred C-CCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 121 S-EVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 121 ~-~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
. ...+ +.+..+..+. +.+.++++|.+++.++.+.|+|++.+..-..++. ..+
T Consensus 101 ~~~~~~---~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~~v~~t~~----------------------~~~- 153 (227)
T 2tps_A 101 GQEDAN---AKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLGPIYPTET----------------------KKD- 153 (227)
T ss_dssp CTTSSC---HHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEECCSSCCCS----------------------SSS-
T ss_pred CCCccC---HHHHHHhcCC-cEEEEecCCHHHHHHHHhCCCCEEEECCCcCCCC----------------------CCC-
Confidence 3 2222 3222222344 6677788999999888899999998632111110 000
Q ss_pred HHhhhccCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 200 FTFAKKIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
......++.++++++..+ +|++ +.|||+ ++|+.+++++|+|+|.+||++++++||...+++|++.++.+
T Consensus 154 ----~~~~~~~~~l~~~~~~~~~~pvi--a~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~ 223 (227)
T 2tps_A 154 ----TRAVQGVSLIEAVRRQGISIPIV--GIGGIT-IDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTY 223 (227)
T ss_dssp ----CCCCCTTHHHHHHHHTTCCCCEE--EESSCC-TTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred ----CCCccCHHHHHHHHHhCCCCCEE--EEcCCC-HHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHhc
Confidence 001223677888877666 9998 679996 99999999999999999999999999988888898887643
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-13 Score=118.22 Aligned_cols=179 Identities=20% Similarity=0.223 Sum_probs=123.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHH---hhcCcceeeccccCcHHHHHHHHHcCCCEEEeC-
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIK---QSVTIPVMAKARIGHFVEAQILEAIGIDYVDES- 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~---~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~- 121 (310)
+.++.+.++|++++ ++. ....+ .....+.+++++ ...++|++++. .++.+.++|+|+|...
T Consensus 30 ~~~~~~~~~G~~~i-~l~-------~~~~~-~~~~~~~~~~l~~~~~~~~v~v~v~~------~~~~a~~~gad~v~l~~ 94 (215)
T 1xi3_A 30 ESVREALEGGATAI-QMR-------IKNAP-TREMYEIGKTLRQLTREYDALFFVDD------RVDVALAVDADGVQLGP 94 (215)
T ss_dssp HHHHHHHHTTCSEE-EEC-------CCSCC-HHHHHHHHHHHHHHHHHTTCEEEEES------CHHHHHHHTCSEEEECT
T ss_pred HHHHHHHHCCCCEE-EEC-------CCCCC-HHHHHHHHHHHHHHHHHcCCeEEEcC------hHHHHHHcCCCEEEECC
Confidence 78999999999987 653 10000 000033444443 34578888753 3467889999999643
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHH
Q 021609 122 EVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~ 201 (310)
...+...+.+. . .++.+.++++|.+++.++.+.|+|++.+++...++. ..
T Consensus 95 ~~~~~~~~~~~---~-~~~~~~v~~~t~~e~~~~~~~g~d~i~~~~~~~~~~----------------------~~---- 144 (215)
T 1xi3_A 95 EDMPIEVAKEI---A-PNLIIGASVYSLEEALEAEKKGADYLGAGSVFPTKT----------------------KE---- 144 (215)
T ss_dssp TSCCHHHHHHH---C-TTSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC------------------------------
T ss_pred ccCCHHHHHHh---C-CCCEEEEecCCHHHHHHHHhcCCCEEEEcCCccCCC----------------------CC----
Confidence 33443333222 2 467788889999999888899999998864211110 00
Q ss_pred hhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 202 FAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 202 ~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
......++.++++++..++|++ +.|||+ ++++.+++++|+|+|.+||++++++||...+++|++.++.
T Consensus 145 --~~~~~~~~~l~~l~~~~~~pvi--a~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~ 212 (215)
T 1xi3_A 145 --DARVIGLEGLRKIVESVKIPVV--AIGGIN-KDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEE 212 (215)
T ss_dssp --CCCCCHHHHHHHHHHHCSSCEE--EESSCC-TTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred --CCCCcCHHHHHHHHHhCCCCEE--EECCcC-HHHHHHHHHcCCCEEEEhHHHhCCCCHHHHHHHHHHHHhh
Confidence 0012346777777766789998 679996 9999999999999999999999999998888888887753
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=126.26 Aligned_cols=189 Identities=14% Similarity=0.122 Sum_probs=124.8
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeC-C
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDES-E 122 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~-~ 122 (310)
.+.++.+.++|++++ +++-. + ..+- .+...-++.++++++.++.|+.+...+. ....++.+.++|||+|+.. .
T Consensus 20 ~~~i~~~~~~Gad~i-hldi~--D-G~fv-p~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 20 GEEIKAVDEAGADWI-HVDVM--D-GRFV-PNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp HHHHHHHHHTTCSEE-EEEEE--B-SSSS-SCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHcCCCEE-EEEEE--e-cCCC-cchhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEECcc
Confidence 377888899999987 55300 0 0000 0011126899999988888887655443 2345788999999999633 2
Q ss_pred --C-CCchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEEcCCCC--CcchHHHHHHHHhhccceEeecccC
Q 021609 123 --V-LTPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRTKGEAG--TGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 123 --~-~~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v~g~~~--~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
. ..+.+..+.+++ .++.+++++ +|..+..+....++|+|.+..... ++.
T Consensus 95 ~~~~~~~~~~~~~i~~--~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~ggq---------------------- 150 (230)
T 1tqj_A 95 HNASPHLHRTLCQIRE--LGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQ---------------------- 150 (230)
T ss_dssp TTTCTTHHHHHHHHHH--TTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC----C----------------------
T ss_pred cccchhHHHHHHHHHH--cCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccccCCc----------------------
Confidence 2 234455555543 566666665 777777766667999987654211 110
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcC-----CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
+-.....+.++++++.. ++|+. +.|||+ .+++.++.++|||++++||+|++++||...+++|++
T Consensus 151 --------~~~~~~~~~i~~lr~~~~~~~~~~~I~--v~GGI~-~~~~~~~~~aGad~vvvGSai~~a~d~~~~~~~l~~ 219 (230)
T 1tqj_A 151 --------SFIPEVLPKIRALRQMCDERGLDPWIE--VDGGLK-PNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRN 219 (230)
T ss_dssp --------CCCGGGHHHHHHHHHHHHHHTCCCEEE--EESSCC-TTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred --------cCcHHHHHHHHHHHHHHHhcCCCCcEE--EECCcC-HHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHH
Confidence 00112255566666544 78998 469995 699999999999999999999999999988888865
Q ss_pred HHh
Q 021609 271 AVT 273 (310)
Q Consensus 271 ~i~ 273 (310)
.++
T Consensus 220 ~~~ 222 (230)
T 1tqj_A 220 SKR 222 (230)
T ss_dssp CCC
T ss_pred HHH
Confidence 443
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-13 Score=116.09 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=120.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLT 125 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~ 125 (310)
+.++++.++|++.+ ++. ... ....+.++++++ -++.+..+..+ ..++++.+.++|||+++.+. .
T Consensus 29 ~~~~~l~~gGv~~i-el~-------~k~----~~~~~~i~~~~~-~~~~~gag~vl-~~d~~~~A~~~GAd~v~~~~--~ 92 (207)
T 2yw3_A 29 GLARVLEEEGVGAL-EIT-------LRT----EKGLEALKALRK-SGLLLGAGTVR-SPKEAEAALEAGAAFLVSPG--L 92 (207)
T ss_dssp HHHHHHHHTTCCEE-EEE-------CSS----THHHHHHHHHTT-SSCEEEEESCC-SHHHHHHHHHHTCSEEEESS--C
T ss_pred HHHHHHHHcCCCEE-EEe-------CCC----hHHHHHHHHHhC-CCCEEEeCeEe-eHHHHHHHHHcCCCEEEcCC--C
Confidence 68899999999976 762 111 011456666666 55555555533 45889999999999997543 2
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..++.+..+. .+++.+++++|.+|+.++.+.|+|||++++....
T Consensus 93 d~~v~~~~~~--~g~~~i~G~~t~~e~~~A~~~Gad~v~~fpa~~~---------------------------------- 136 (207)
T 2yw3_A 93 LEEVAALAQA--RGVPYLPGVLTPTEVERALALGLSALKFFPAEPF---------------------------------- 136 (207)
T ss_dssp CHHHHHHHHH--HTCCEEEEECSHHHHHHHHHTTCCEEEETTTTTT----------------------------------
T ss_pred CHHHHHHHHH--hCCCEEecCCCHHHHHHHHHCCCCEEEEecCccc----------------------------------
Confidence 3455555544 3566777899999999999999999999652110
Q ss_pred cCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCC---HHHHHHHHHHHH
Q 021609 206 IAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD---PVKRAQAIVRAV 272 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~d---p~~~a~~l~~~i 272 (310)
...+.++.++... ++|++ +.||| +++++.+++++|+++|.+||+|+. +| +...++++++.+
T Consensus 137 --gG~~~lk~l~~~~~~ipvv--aiGGI-~~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~~~ 201 (207)
T 2yw3_A 137 --QGVRVLRAYAEVFPEVRFL--PTGGI-KEEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKALL 201 (207)
T ss_dssp --THHHHHHHHHHHCTTCEEE--EBSSC-CGGGHHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHHHC
T ss_pred --cCHHHHHHHHhhCCCCcEE--EeCCC-CHHHHHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHHHh
Confidence 0134566666654 79998 67999 589999999999999999999998 88 455555555443
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=122.85 Aligned_cols=169 Identities=22% Similarity=0.378 Sum_probs=124.1
Q ss_pred HHHHHHcCCCEEEe----CCC---CCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh------CCCEEEEc--CC--
Q 021609 107 AQILEAIGIDYVDE----SEV---LTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE------GAAMIRTK--GE-- 168 (310)
Q Consensus 107 a~~~~~aGad~Vi~----~~~---~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~------Gad~V~v~--g~-- 168 (310)
.+.+.++|++.|.. .+. -....+.+.+...++. ++++.+|+|.+||.+.+++ |.++|++- +.
T Consensus 36 ~~a~~asg~e~vtva~rR~~~~~~~~~~~~~~~i~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~iKlEv~~d~~ 115 (265)
T 1wv2_A 36 RRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQK 115 (265)
T ss_dssp HHHHHHSCCSEEEEEGGGCCC-------------CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTT
T ss_pred HHHHHHhCCCeEEEEEEeeccccCCCcchHHhhhhhcCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCeEEEEeecCcc
Confidence 45667788888841 121 1234566667544555 7889999999999886542 66788854 32
Q ss_pred CCCcchHHHHHHHHhhccc-eEeecccChhHHHHhh-------------h--cc---CCcHHHHHHHhhcCCCCEEEeCC
Q 021609 169 AGTGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTFA-------------K--KI---AAPYDLVMQTKQLGRLPVVHFAA 229 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~~-------------~--~~---~~~~~~i~~i~~~~~iPVi~iA~ 229 (310)
...+++..++++.+.+... +.+++++.+|..+... . +. ..++++++.+++..++||| +.
T Consensus 116 ~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI--~e 193 (265)
T 1wv2_A 116 TLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEAKVPVL--VD 193 (265)
T ss_dssp TCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHHCSSCBE--EE
T ss_pred ccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCCCCCcCCHHHHHHHHhcCCCCEE--Ee
Confidence 2356788899999998777 9999988888776320 0 01 1357889999988899998 68
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
|||.+++|+.+++++|||||+|||+|++++||...+++|+++++.++.
T Consensus 194 GGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~aGr~ 241 (265)
T 1wv2_A 194 AGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGRL 241 (265)
T ss_dssp SCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986544
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-13 Score=118.49 Aligned_cols=188 Identities=13% Similarity=0.114 Sum_probs=126.2
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCC---CCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEe
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGV---ARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~---~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~ 120 (310)
.+.++.+.++|++++ +++ +.. |. .....++.++++++.++.|+.+...+. ..+.++.+.++|+|+|..
T Consensus 22 ~~~i~~~~~~Gad~i-~l~-----i~D--g~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~v 93 (228)
T 1h1y_A 22 AAEADRMVRLGADWL-HMD-----IMD--GHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTF 93 (228)
T ss_dssp HHHHHHHHHTTCSEE-EEE-----EEB--SSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEE-EEE-----Eec--CCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence 377888899999987 553 000 00 001126899999988777777655543 234578888899999953
Q ss_pred CC--CCCc-hhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHh---CCCEEEEcCCC--CCcchHHHHHHHHhhccceEe
Q 021609 121 SE--VLTP-ADEENHINKHNFRIPFVCGC--RNLGEALRRIRE---GAAMIRTKGEA--GTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 121 ~~--~~~~-~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~---Gad~V~v~g~~--~~~~~~~~~~~~r~~~~~~~~ 190 (310)
+. ...+ .+..+.+++. ++.+++.+ +|..+..+.... ++|+|.+.... +++.
T Consensus 94 H~~~~~~~~~~~~~~i~~~--g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~----------------- 154 (228)
T 1h1y_A 94 HIEVSRDNWQELIQSIKAK--GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQ----------------- 154 (228)
T ss_dssp EGGGCTTTHHHHHHHHHHT--TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSC-----------------
T ss_pred CCCCcccHHHHHHHHHHHc--CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcc-----------------
Confidence 32 2234 4555555543 55555655 565555555544 99999875422 1111
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
. -....++.++++++.. ++|+. +.|||+ ++++.++.++|+|++++||+|++++||...+++|+
T Consensus 155 --~-----------~~~~~l~~i~~~~~~~~~~pi~--v~GGI~-~~ni~~~~~aGaD~vvvGsai~~~~d~~~~~~~l~ 218 (228)
T 1h1y_A 155 --K-----------FMPEMMEKVRALRKKYPSLDIE--VDGGLG-PSTIDVAASAGANCIVAGSSIFGAAEPGEVISALR 218 (228)
T ss_dssp --C-----------CCGGGHHHHHHHHHHCTTSEEE--EESSCS-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred --c-----------CCHHHHHHHHHHHHhcCCCCEE--EECCcC-HHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHH
Confidence 0 0112355566777665 78998 469995 79999999999999999999999999999999998
Q ss_pred HHHhcc
Q 021609 270 RAVTHY 275 (310)
Q Consensus 270 ~~i~~~ 275 (310)
+.++..
T Consensus 219 ~~~~~~ 224 (228)
T 1h1y_A 219 KSVEGS 224 (228)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 877643
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.7e-13 Score=116.28 Aligned_cols=180 Identities=19% Similarity=0.214 Sum_probs=120.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcc---eeeccccCcHHHHHHHHHcCCCEEEeCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIP---VMAKARIGHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iP---v~vk~~~~~~~~a~~~~~aGad~Vi~~~ 122 (310)
+.+..+.++|++++ +++ ...-+ .....+.++.+++.+ .+ ++++ +.++.+.++|+|+|....
T Consensus 33 ~~~~~~~~~G~~~v-~lr-------~~~~~-~~~~~~~~~~l~~~~-~~~~~l~v~------~~~~~a~~~gad~v~l~~ 96 (221)
T 1yad_A 33 ARIIITIQNEVDFI-HIR-------ERSKS-AADILKLLDLIFEGG-IDKRKLVMN------GRVDIALFSTIHRVQLPS 96 (221)
T ss_dssp HHHHHHHGGGCSEE-EEC-------CTTSC-HHHHHHHHHHHHHTT-CCGGGEEEE------SCHHHHHTTTCCEEEECT
T ss_pred HHHHHHHHCCCCEE-EEc-------cCCCC-HHHHHHHHHHHHHhc-CcCCeEEEe------ChHHHHHHcCCCEEEeCC
Confidence 44677788999976 663 11100 000134555555432 23 4433 345778899999996433
Q ss_pred -CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHH
Q 021609 123 -VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 123 -~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~ 201 (310)
......+.+. . .++.++++++|.+++.++.+.|+|+|.+.+...+.. ..+
T Consensus 97 ~~~~~~~~~~~---~-~~~~ig~sv~t~~~~~~a~~~gaD~i~~~~~f~~~~----------------------~~g--- 147 (221)
T 1yad_A 97 GSFSPKQIRAR---F-PHLHIGRSVHSLEEAVQAEKEDADYVLFGHVFETDC----------------------KKG--- 147 (221)
T ss_dssp TSCCHHHHHHH---C-TTCEEEEEECSHHHHHHHHHTTCSEEEEECCC--------------------------------
T ss_pred CccCHHHHHHH---C-CCCEEEEEcCCHHHHHHHHhCCCCEEEECCccccCC----------------------CCC---
Confidence 3333333322 2 267888899999999999999999998854211110 000
Q ss_pred hhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 202 FAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 202 ~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.....++.++++++..++|++ +.||| +++++.+++++|+++|.+||++++++||...+++|++.++...
T Consensus 148 ---~~~~~~~~l~~~~~~~~~pvi--a~GGI-~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~~~ 216 (221)
T 1yad_A 148 ---LEGRGVSLLSDIKQRISIPVI--AIGGM-TPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLKEMR 216 (221)
T ss_dssp ------CHHHHHHHHHHHCCSCEE--EESSC-CGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHC
T ss_pred ---CCCCCHHHHHHHHHhCCCCEE--EECCC-CHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHHHHHHHHHhh
Confidence 012236777777766689998 67999 8999999999999999999999999999999999988886543
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=120.90 Aligned_cols=176 Identities=12% Similarity=0.135 Sum_probs=119.1
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCCC
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESEV 123 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~ 123 (310)
.+.++.+.++|+++| ++. .+.-+ .....+.++++++.+++++++++. ++.+.++|+|+|. ...+
T Consensus 16 ~~~~~~a~~~Gv~~v-~lr-------~k~~~-~~~~~~~i~~l~~~~~~~livnd~------~~~A~~~gadgvhl~~~~ 80 (210)
T 3ceu_A 16 DKIITALFEEGLDIL-HLR-------KPETP-AMYSERLLTLIPEKYHRRIVTHEH------FYLKEEFNLMGIHLNARN 80 (210)
T ss_dssp HHHHHHHHHTTCCEE-EEC-------CSSCC-HHHHHHHHHHSCGGGGGGEEESSC------TTHHHHTTCSEEECCSSS
T ss_pred HHHHHHHHHCCCCEE-EEc-------cCCCC-HHHHHHHHHHHHHHhCCeEEEeCC------HHHHHHcCCCEEEECccc
Confidence 367888899999986 662 11100 000123455555667888887654 3578899999995 3333
Q ss_pred CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
.+... ..+..++++++|.+|+.++. .|+||+.+.+-..++ ++.+
T Consensus 81 ~~~~~--------~~~~~ig~s~~t~~e~~~A~-~GaDyv~~g~vf~t~----------------------sk~~----- 124 (210)
T 3ceu_A 81 PSEPH--------DYAGHVSCSCHSVEEVKNRK-HFYDYVFMSPIYDSI----------------------SKVN----- 124 (210)
T ss_dssp CSCCT--------TCCSEEEEEECSHHHHHTTG-GGSSEEEECCCC----------------------------------
T ss_pred ccccc--------ccCCEEEEecCCHHHHHHHh-hCCCEEEECCcCCCC----------------------CCCC-----
Confidence 32211 13678899999999999887 999999975421111 1100
Q ss_pred hccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 204 KKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 204 ~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
......++.++++++. .++||+ +.||| +++++.+++++|++||.|+|+|++++||... ++|++.++.|
T Consensus 125 ~~~~~g~~~l~~~~~~~~~~iPvi--aiGGI-~~~nv~~~~~~Ga~gVav~s~i~~~~d~~~~-~~~~~~v~~~ 194 (210)
T 3ceu_A 125 YYSTYTAEELREAQKAKIIDSKVM--ALGGI-NEDNLLEIKDFGFGGAVVLGDLWNKFDACLD-QNYLAVIEHF 194 (210)
T ss_dssp --CCCCHHHHHHHHHTTCSSTTEE--EESSC-CTTTHHHHHHTTCSEEEESHHHHTTCCTTTS-SCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCCCCEE--EECCC-CHHHHHHHHHhCCCEEEEhHHhHcCCCHHHH-HHHHHHHHHH
Confidence 0012246777887775 589999 56999 5999999999999999999999999999755 5566666544
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=118.83 Aligned_cols=186 Identities=13% Similarity=0.118 Sum_probs=122.3
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCC-C--CCCCHHHHHHHHhhcCcceeeccccCc-HHHHHHHHHcCCCEEEe
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGV-A--RMSDPQLIKEIKQSVTIPVMAKARIGH-FVEAQILEAIGIDYVDE 120 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~-~--~~~~~~~i~~i~~~~~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~ 120 (310)
.+.++.+.++|++++ ++. ...|+ . ....++.++++++.++.|+.+...+.+ .+.++.+.++|+|+|..
T Consensus 19 ~~~~~~~~~~G~~~i-~~~-------~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~v 90 (220)
T 2fli_A 19 ASELARIEETDAEYV-HID-------IMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTI 90 (220)
T ss_dssp HHHHHHHHHTTCCEE-EEE-------EEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHcCCCEE-EEE-------eecCCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEE
Confidence 377888899999986 442 01111 0 111278999999888888888766553 23568999999999952
Q ss_pred C--CCCCchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeeccc
Q 021609 121 S--EVLTPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 121 ~--~~~~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
+ ....+.+..+.+++. +..+++++ +|..+..+....++|+|.+.+ .++++. ..
T Consensus 91 h~~~~~~~~~~~~~~~~~--g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~-------------------~~ 149 (220)
T 2fli_A 91 HTESTRHIHGALQKIKAA--GMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQ-------------------AF 149 (220)
T ss_dssp EGGGCSCHHHHHHHHHHT--TSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSC-------------------CC
T ss_pred ccCccccHHHHHHHHHHc--CCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCccc-------------------cc
Confidence 2 223345555666553 44555555 565565555556789885432 222221 00
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhcC-----CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
.....+.++.+++.. ++|++ +.|||+ ++++.++.++|+|+++|||+|++++||...+++|+
T Consensus 150 -----------~~~~~~~i~~~~~~~~~~~~~~~i~--v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~a~~~~~ 215 (220)
T 2fli_A 150 -----------IPECLEKVATVAKWRDEKGLSFDIE--VDGGVD-NKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLR 215 (220)
T ss_dssp -----------CGGGHHHHHHHHHHHHHTTCCCEEE--EESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHHhcCCCceEE--EECcCC-HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHH
Confidence 011123334444322 68887 579996 99999999999999999999999999999999887
Q ss_pred HHHh
Q 021609 270 RAVT 273 (310)
Q Consensus 270 ~~i~ 273 (310)
+.++
T Consensus 216 ~~~~ 219 (220)
T 2fli_A 216 TALN 219 (220)
T ss_dssp HHHC
T ss_pred HHhc
Confidence 7653
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=114.03 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=124.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
+.++.+.++|++.+ .+. .+... ..+.++++|+.+ +.++.+... ...++++.+.++|+|+++ ...
T Consensus 26 ~~~~~~~~~G~~~i-ev~-----~~~~~------~~~~i~~ir~~~~~~~~ig~~~v-~~~~~~~~a~~~Gad~iv-~~~ 91 (205)
T 1wa3_A 26 EKALAVFEGGVHLI-EIT-----FTVPD------ADTVIKELSFLKEKGAIIGAGTV-TSVEQCRKAVESGAEFIV-SPH 91 (205)
T ss_dssp HHHHHHHHTTCCEE-EEE-----TTSTT------HHHHHHHTHHHHHTTCEEEEESC-CSHHHHHHHHHHTCSEEE-CSS
T ss_pred HHHHHHHHCCCCEE-EEe-----CCChh------HHHHHHHHHHHCCCCcEEEeccc-CCHHHHHHHHHcCCCEEE-cCC
Confidence 46888889999987 331 01100 145678887765 455554332 234678889999999994 333
Q ss_pred CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
++ .++.+.+++ .+++++++++|.+++.++.++|+|++.+++.. .
T Consensus 92 ~~-~~~~~~~~~--~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~~---~------------------------------ 135 (205)
T 1wa3_A 92 LD-EEISQFCKE--KGVFYMPGVMTPTELVKAMKLGHTILKLFPGE---V------------------------------ 135 (205)
T ss_dssp CC-HHHHHHHHH--HTCEEECEECSHHHHHHHHHTTCCEEEETTHH---H------------------------------
T ss_pred CC-HHHHHHHHH--cCCcEECCcCCHHHHHHHHHcCCCEEEEcCcc---c------------------------------
Confidence 33 456666554 57888889999999999999999999886410 0
Q ss_pred hccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCC---HHHHHHHHHHHHhc
Q 021609 204 KKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD---PVKRAQAIVRAVTH 274 (310)
Q Consensus 204 ~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~d---p~~~a~~l~~~i~~ 274 (310)
...+.++++++.. ++|++ +.|||+ ++++.+++++|+|+|++||+|++ +| |...++++.+.++.
T Consensus 136 ----~g~~~~~~l~~~~~~~pvi--a~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~-~d~~~~~~~~~~~~~~~~~ 202 (205)
T 1wa3_A 136 ----VGPQFVKAMKGPFPNVKFV--PTGGVN-LDNVCEWFKAGVLAVGVGSALVK-GTPDEVREKAKAFVEKIRG 202 (205)
T ss_dssp ----HHHHHHHHHHTTCTTCEEE--EBSSCC-TTTHHHHHHHTCSCEEECHHHHC-SCHHHHHHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHhCCCCcEE--EcCCCC-HHHHHHHHHCCCCEEEECccccC-CCHHHHHHHHHHHHHHHHh
Confidence 0134566666655 78998 789995 89999999999999999999999 89 98888888887764
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-13 Score=116.44 Aligned_cols=158 Identities=23% Similarity=0.273 Sum_probs=114.5
Q ss_pred HHHHHHHHhh-cCcceeeccccC--cHHHHHHHHHcCCCEEEeCCCCC---chhHHHHHHhcCCCCcEEEe---cCCH-H
Q 021609 81 PQLIKEIKQS-VTIPVMAKARIG--HFVEAQILEAIGIDYVDESEVLT---PADEENHINKHNFRIPFVCG---CRNL-G 150 (310)
Q Consensus 81 ~~~i~~i~~~-~~iPv~vk~~~~--~~~~a~~~~~aGad~Vi~~~~~~---~~~~~~~i~~~~~~i~~~v~---~~t~-~ 150 (310)
++.++++++. .++|+.+...+. ....++.+.++|+|+|+...... +.++.+.++++ ++.++++ +.|. +
T Consensus 41 ~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~~~--g~~~~v~~~~~~t~~~ 118 (211)
T 3f4w_A 41 VNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEA--GKQVVVDMICVDDLPA 118 (211)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHH--TCEEEEECTTCSSHHH
T ss_pred HHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHHHc--CCeEEEEecCCCCHHH
Confidence 6889999987 589997754432 23348899999999997543322 24455555544 4555544 4454 5
Q ss_pred HHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCC
Q 021609 151 EALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAA 229 (310)
Q Consensus 151 ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~ 229 (310)
.+..+.+.|+|+|.++. ++++. +......+.++++++.. ++|++ ++
T Consensus 119 ~~~~~~~~g~d~i~v~~-g~~g~------------------------------~~~~~~~~~i~~l~~~~~~~~i~--~~ 165 (211)
T 3f4w_A 119 RVRLLEEAGADMLAVHT-GTDQQ------------------------------AAGRKPIDDLITMLKVRRKARIA--VA 165 (211)
T ss_dssp HHHHHHHHTCCEEEEEC-CHHHH------------------------------HTTCCSHHHHHHHHHHCSSCEEE--EE
T ss_pred HHHHHHHcCCCEEEEcC-CCccc------------------------------ccCCCCHHHHHHHHHHcCCCcEE--EE
Confidence 57788899999998863 21110 00112466777887764 78998 67
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
|||+ ++++.+++++|||++++||+|++++||...+++|.+.+++
T Consensus 166 gGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~~ 209 (211)
T 3f4w_A 166 GGIS-SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQ 209 (211)
T ss_dssp SSCC-TTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred CCCC-HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHhh
Confidence 9995 9999999999999999999999999999999999888765
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-14 Score=125.37 Aligned_cols=194 Identities=18% Similarity=0.235 Sum_probs=125.7
Q ss_pred HHHHHHHHcCCcEEEecc-CC--ccccccc----------CCCCCCCCHHHHHHHHhhcCcceeeccccCc------HHH
Q 021609 46 EQARVAEEAGACAVMALE-RV--PADIRSQ----------GGVARMSDPQLIKEIKQSVTIPVMAKARIGH------FVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~--~~~~~~~----------~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~------~~~ 106 (310)
+.++.++++ +++| +++ |. |.....+ .|.+....++.++++++.+++|+.+....+. .+.
T Consensus 23 ~~a~~~~~~-ad~i-el~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~ 100 (248)
T 1geq_A 23 NFLLALDEY-AGAI-ELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNF 100 (248)
T ss_dssp HHHHHHGGG-BSCE-EEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHH
T ss_pred HHHHHHHHc-CCEE-EECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHH
Confidence 678888888 9987 554 21 1000000 1111111267888999888999888764332 477
Q ss_pred HHHHHHcCCCEEEeCCC--CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCC-EEEEcCC-CCCcchHHHHHHHH
Q 021609 107 AQILEAIGIDYVDESEV--LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAA-MIRTKGE-AGTGNIIEAVRHVR 182 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~--~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad-~V~v~g~-~~~~~~~~~~~~~r 182 (310)
++.+.++|||+|+..+. ..+.++.+.+++++....+.+++.|..+..+....+++ ++.+... +.++.
T Consensus 101 ~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~i~~~~~~G~~g~--------- 171 (248)
T 1geq_A 101 LAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGA--------- 171 (248)
T ss_dssp HHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC--------------
T ss_pred HHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCeEEEEECCccCCC---------
Confidence 89999999999975432 12445566666666666667777777777776666676 6644222 11111
Q ss_pred hhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC--
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG-- 259 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~-- 259 (310)
. .... ...+.++++++..++|++ ++|||++++|+.+++++|+|+|+|||+|+++.
T Consensus 172 ------------~--------~~~~~~~~~~i~~l~~~~~~pi~--~~GGI~~~e~i~~~~~~Gad~vivGsai~~~~~~ 229 (248)
T 1geq_A 172 ------------R--------EEIPKTAYDLLRRAKRICRNKVA--VGFGVSKREHVVSLLKEGANGVVVGSALVKIIGE 229 (248)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHCSSCEE--EESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHH
T ss_pred ------------C--------CCCChhHHHHHHHHHhhcCCCEE--EEeecCCHHHHHHHHHcCCCEEEEcHHHHhhHhh
Confidence 0 0011 125678888877789998 68999988999999999999999999999852
Q ss_pred CHHHHHHHHHHHHh
Q 021609 260 DPVKRAQAIVRAVT 273 (310)
Q Consensus 260 dp~~~a~~l~~~i~ 273 (310)
+| ..+++|++.++
T Consensus 230 ~~-~~~~~~~~~~~ 242 (248)
T 1geq_A 230 KG-REATEFLKKKV 242 (248)
T ss_dssp HG-GGCHHHHHHHH
T ss_pred Ch-HHHHHHHHHHH
Confidence 44 45555655554
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-13 Score=118.86 Aligned_cols=181 Identities=15% Similarity=0.233 Sum_probs=115.5
Q ss_pred HHHHHHHHcCCcEEEecc-CCc-------ccc----cc-cCCCCCCCCHHHHHHHHhhcCcceeeccccCcH--HHHHHH
Q 021609 46 EQARVAEEAGACAVMALE-RVP-------ADI----RS-QGGVARMSDPQLIKEIKQSVTIPVMAKARIGHF--VEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~-------~~~----~~-~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~--~~a~~~ 110 (310)
+.++.++++|+|+| +|+ |.. ..+ ++ .+|.+....++.++++++.+++|+++..+.+.. ..++.+
T Consensus 36 ~~~~~l~~~Gad~i-elg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~~~~~~~~~~~a 114 (262)
T 1rd5_A 36 EALRLLDGCGADVI-ELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKM 114 (262)
T ss_dssp HHHHHHHHTTCSSE-EEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHH
T ss_pred HHHHHHHHcCCCEE-EECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHHHHHHH
Confidence 67889999999987 665 221 000 00 012211122567888888899999886533311 112448
Q ss_pred HHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCC-HHHHHHHHHhCCCEEEEcCC-CCCcchHHHHHHHHhhcc
Q 021609 111 EAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRN-LGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 111 ~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t-~~ea~~~~~~Gad~V~v~g~-~~~~~~~~~~~~~r~~~~ 186 (310)
.++|+|+++..+.. +..++.+.+++++....+.+...+ .+.+..+.+.+.+++.+.+. +.+|.
T Consensus 115 ~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~s~~G~tG~------------- 181 (262)
T 1rd5_A 115 KEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGP------------- 181 (262)
T ss_dssp HHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCT-------------
T ss_pred HHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEEEecCCCCCCC-------------
Confidence 89999999765431 344555666656655555555544 44445556666666654332 22331
Q ss_pred ceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 187 DIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
. ... ....++++++++..++||+ +.|||+|++++.+++++|||+|+|||+|+++
T Consensus 182 --------~--------~~~~~~~~~~i~~v~~~~~~pI~--vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~ 236 (262)
T 1rd5_A 182 --------R--------ANVNPRVESLIQEVKKVTNKPVA--VGFGISKPEHVKQIAQWGADGVIIGSAMVRQ 236 (262)
T ss_dssp --------T--------SCBCTHHHHHHHHHHHHCSSCEE--EESCCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred --------C--------cCCCchHHHHHHHHHhhcCCeEE--EECCcCCHHHHHHHHHcCCCEEEEChHHHhH
Confidence 0 011 1125678888887789998 5799999999999999999999999999974
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=4.6e-13 Score=118.41 Aligned_cols=186 Identities=15% Similarity=0.159 Sum_probs=121.8
Q ss_pred HHHHHHHHHcCCcEEEecc--CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc-HHHHHHHHHcCCCEEEeC
Q 021609 45 PEQARVAEEAGACAVMALE--RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH-FVEAQILEAIGIDYVDES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~~ 121 (310)
.+.++.+.++|++++ ++. ..+.... . ...++.++++++.++.|+.+...++. .+.++.+.++|+|+|..+
T Consensus 26 ~~~i~~~~~~G~d~i-~l~~~dg~f~~~----~--~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh 98 (230)
T 1rpx_A 26 GEQVKAIEQAGCDWI-HVDVMDGRFVPN----I--TIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVH 98 (230)
T ss_dssp HHHHHHHHHTTCCCE-EEEEEBSSSSSC----B--CCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCCEE-EEeeccCCcccc----c--ccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEE
Confidence 467888899999987 552 0000000 0 11278999999888888888766654 346888899999999633
Q ss_pred CC----CCchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecc
Q 021609 122 EV----LTPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 122 ~~----~~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
.. ..+.+..+.+++. ++.+++.+ +|..+..+....++|+|.+.+. ++++. +
T Consensus 99 ~~~~~~~~~~~~~~~~~~~--g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~pg~~g~-------------------~ 157 (230)
T 1rpx_A 99 CEQSSTIHLHRTINQIKSL--GAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQ-------------------S 157 (230)
T ss_dssp CSTTTCSCHHHHHHHHHHT--TSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTTCSSC-------------------C
T ss_pred ecCccchhHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEcCCCCCc-------------------c
Confidence 22 2334555555543 55566655 4555555555678999844332 22221 0
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhcC-----CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
-.....+.++++++.. ++|++ +.|||+ ++++.+++++|||+|+|||+|++++||...+++|
T Consensus 158 -----------~~~~~~~~i~~l~~~~~~~~~~~pi~--v~GGI~-~~n~~~~~~aGad~vvvgSaI~~a~dp~~a~~~l 223 (230)
T 1rpx_A 158 -----------FIESQVKKISDLRKICAERGLNPWIE--VDGGVG-PKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGI 223 (230)
T ss_dssp -----------CCTTHHHHHHHHHHHHHHHTCCCEEE--EESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHH
T ss_pred -----------ccHHHHHHHHHHHHHHHhcCCCceEE--EECCCC-HHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHH
Confidence 0112234445555433 68987 569995 9999999999999999999999999999888877
Q ss_pred HHHH
Q 021609 269 VRAV 272 (310)
Q Consensus 269 ~~~i 272 (310)
.+.+
T Consensus 224 ~~~~ 227 (230)
T 1rpx_A 224 KTSK 227 (230)
T ss_dssp HTCC
T ss_pred HHHH
Confidence 6543
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-13 Score=129.03 Aligned_cols=189 Identities=13% Similarity=0.243 Sum_probs=97.6
Q ss_pred ceeEEEeeCCce-eeeeccCcceeecchhhhhhCcccccCC---CHH-HHHHHHHcCCcEE-EeccCCcccccccCCCCC
Q 021609 4 TGVVAVYGNDGA-ITETKKSPFSVKVGLAQMLRGGVIMDVV---TPE-QARVAEEAGACAV-MALERVPADIRSQGGVAR 77 (310)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~i~~~~---~~~-~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~ 77 (310)
+|+..+.|+.+. +.+++..+|.+.+-. + ....+.+++ ..+ ..+.++..||+++ +.+|+.++.... .|...
T Consensus 115 ~G~~~~vGs~~~~le~~~~~~~~v~r~~-P--~~~~ianig~~~~~e~~~~~ve~~~adal~ihln~~qe~~~p-~Gd~~ 190 (365)
T 3sr7_A 115 CGLLFVTGSYSTALKNPDDTSYQVKKSR-P--HLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHINLMQELLMP-EGERE 190 (365)
T ss_dssp HTCCEEC--------------------------CCEEEEEETTSCHHHHHHHHHHHCCSCEEEEECHHHHHTSS-SSCCC
T ss_pred cCCCeecccccccccCccccceEehhhC-C--CCcEEEEeCCCCCHHHHHHHHHhcCCCEEEEeccccccccCC-CCCCc
Confidence 578888999987 777777778766533 2 122233332 444 5566678999998 677732221111 12211
Q ss_pred C-CCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHH
Q 021609 78 M-SDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRI 156 (310)
Q Consensus 78 ~-~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~ 156 (310)
. ...+.++.+++.+++||++|.. ++ + .+.++++++.
T Consensus 191 ~~~~~~~I~~l~~~~~~PVivK~v-g~-----------------------------------g-------~s~e~A~~l~ 227 (365)
T 3sr7_A 191 FRSWKKHLSDYAKKLQLPFILKEV-GF-----------------------------------G-------MDVKTIQTAI 227 (365)
T ss_dssp CHHHHHHHHHHHHHCCSCEEEEEC-SS-----------------------------------C-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCEEEEEC-CC-----------------------------------C-------CCHHHHHHHH
Confidence 1 1247899999999999999952 31 0 1335566666
Q ss_pred HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhc-CCCCEEEeCCCCCCC
Q 021609 157 REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQL-GRLPVVHFAAGGVAT 234 (310)
Q Consensus 157 ~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~-~~iPVi~iA~GGI~t 234 (310)
++|+|+|.+.|++++.- ..++..|.. ....+. +. .+....+..++.. .++||+ ++|||++
T Consensus 228 ~aGad~I~V~g~GGt~~--a~ie~~r~~-----~~~~~~---------~~g~pt~~~L~~v~~~~~~ipvi--a~GGI~~ 289 (365)
T 3sr7_A 228 DLGVKTVDISGRGGTSF--AYIENRRGG-----NRSYLN---------QWGQTTAQVLLNAQPLMDKVEIL--ASGGIRH 289 (365)
T ss_dssp HHTCCEEECCCBC---------------------CGGGT---------TCSCBHHHHHHHHGGGTTTSEEE--ECSSCCS
T ss_pred HcCCCEEEEeCCCCccc--chhhccccc-----cccccc---------cccccHHHHHHHHHHhcCCCeEE--EeCCCCC
Confidence 77777777766543320 011111100 000000 11 2234455555443 268998 8999999
Q ss_pred HHHHHHHHHcCCCEEEEcccccc
Q 021609 235 PADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 235 ~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+.|+.+++.+|||+|++|++++.
T Consensus 290 g~Dv~KaLalGAdaV~ig~~~l~ 312 (365)
T 3sr7_A 290 PLDIIKALVLGAKAVGLSRTMLE 312 (365)
T ss_dssp HHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHHHHHHHcCCCEEEECHHHHH
Confidence 99999999999999999999885
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.3e-13 Score=120.71 Aligned_cols=196 Identities=16% Similarity=0.158 Sum_probs=124.2
Q ss_pred HHHHHHHHHcCCcEEEecc-CC-------cccccc-----cCCCCCCCCHHHHHHHHhhc-Ccceeecccc------CcH
Q 021609 45 PEQARVAEEAGACAVMALE-RV-------PADIRS-----QGGVARMSDPQLIKEIKQSV-TIPVMAKARI------GHF 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-~~-------~~~~~~-----~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~------~~~ 104 (310)
.+.++.++++|+|+| .++ |. |..++. ..|.+....++.++++++.+ ++|+++.... +..
T Consensus 34 ~~~~~~l~~~G~D~I-ElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~ 112 (262)
T 2ekc_A 34 LKAFKEVLKNGTDIL-EIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLE 112 (262)
T ss_dssp HHHHHHHHHTTCSEE-EEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHH
T ss_pred HHHHHHHHHcCCCEE-EECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHH
Confidence 367999999999987 554 22 111111 12332222357788999888 9999884222 224
Q ss_pred HHHHHHHHcCCCEEEeCCCCCch---hHHHHHHhcCCCCcEEEec-CCHHHHHHHHHhCCCEEEEcCC-CCCcchHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEVLTPA---DEENHINKHNFRIPFVCGC-RNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVR 179 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~~~~---~~~~~i~~~~~~i~~~v~~-~t~~ea~~~~~~Gad~V~v~g~-~~~~~~~~~~~ 179 (310)
.+++.+.++|+|+++.++. .+. ++.+.+++++..+..++.. .+.+.+....+.+..++..... +.||.-
T Consensus 113 ~f~~~~~~aG~dgvii~dl-~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs~~g~TG~~----- 186 (262)
T 2ekc_A 113 KFCRLSREKGIDGFIVPDL-PPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTGTTGAR----- 186 (262)
T ss_dssp HHHHHHHHTTCCEEECTTC-CHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEESSCC----------
T ss_pred HHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEecCCccCCC-----
Confidence 6678899999999987653 333 4455555566553344443 4555556666665555543322 223310
Q ss_pred HHHhhccceEeecccChhHHHHhhhccC-C-cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIA-A-PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~~-~-~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.... . ..++++.+++..++|+. .+|||++++++.+ +..|||+|+|||+|++
T Consensus 187 ------------------------~~~~~~~~~~~v~~vr~~~~~pv~--vG~GI~t~e~~~~-~~~gADgvIVGSai~~ 239 (262)
T 2ekc_A 187 ------------------------EKLPYERIKKKVEEYRELCDKPVV--VGFGVSKKEHARE-IGSFADGVVVGSALVK 239 (262)
T ss_dssp ----------------------------CHHHHHHHHHHHHHCCSCEE--EESSCCSHHHHHH-HHTTSSEEEECHHHHH
T ss_pred ------------------------CCcCcccHHHHHHHHHhhcCCCEE--EeCCCCCHHHHHH-HHcCCCEEEECHHHHh
Confidence 0011 1 24678888887889998 6899999999999 7789999999999998
Q ss_pred C--CCHHHHHHHHHHHHhc
Q 021609 258 S--GDPVKRAQAIVRAVTH 274 (310)
Q Consensus 258 a--~dp~~~a~~l~~~i~~ 274 (310)
. +++...+++|.+.++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~ 258 (262)
T 2ekc_A 240 LAGQKKIEDLGNLVKELKE 258 (262)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHH
Confidence 6 4555566667766654
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=7.9e-13 Score=119.91 Aligned_cols=183 Identities=20% Similarity=0.215 Sum_probs=118.8
Q ss_pred HHHHHHHHHcCCcEEEecc-CC-------ccccc----c-cCCCCCCCCHHHHHHHHhh-cCcceeecccc------CcH
Q 021609 45 PEQARVAEEAGACAVMALE-RV-------PADIR----S-QGGVARMSDPQLIKEIKQS-VTIPVMAKARI------GHF 104 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-~~-------~~~~~----~-~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~------~~~ 104 (310)
.+.++.++++|+|+| .++ |. |..++ + .+|.+....++.++++++. +++|+.+.... +..
T Consensus 34 ~~~~~~l~~~GaD~i-eig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~ 112 (268)
T 1qop_A 34 LKIIDTLIDAGADAL-ELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGID 112 (268)
T ss_dssp HHHHHHHHHTTCSSE-EEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHH
T ss_pred HHHHHHHHHCCCCEE-EECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHH
Confidence 367999999999987 554 21 11111 0 1122211225789999988 79998774211 224
Q ss_pred HHHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCC-CCCcchHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRH 180 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~-~~~~~~~~~~~~ 180 (310)
.+++.+.++|+|+++.++.. +..++.+.+++++.....++ ...+.+.+....+.+.+++.+... +.||..
T Consensus 113 ~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~------ 186 (268)
T 1qop_A 113 AFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAE------ 186 (268)
T ss_dssp HHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSS------
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEEecCCcCCCc------
Confidence 67889999999999866542 34566677766665533333 345556566666666555543221 223310
Q ss_pred HHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
. .......++++++++..++||+ .+|||+|++++.+++..|||+|+|||+|++.
T Consensus 187 --------------~--------~~~~~~~~~i~~lr~~~~~pi~--vggGI~t~e~~~~~~~agAD~vVVGSai~~~ 240 (268)
T 1qop_A 187 --------------N--------RGALPLHHLIEKLKEYHAAPAL--QGFGISSPEQVSAAVRAGAAGAISGSAIVKI 240 (268)
T ss_dssp --------------S--------CC--CCHHHHHHHHHTTCCCEE--EESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred --------------c--------CCCchHHHHHHHHHhccCCcEE--EECCCCCHHHHHHHHHcCCCEEEEChHHhhh
Confidence 0 0012346788889888889998 6899999999999999999999999999974
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.9e-13 Score=129.13 Aligned_cols=249 Identities=15% Similarity=0.142 Sum_probs=139.1
Q ss_pred ceeEEEeeCCce-eeeec-cCcceeecchhhhhhCcc---------cccCCCHHHHHH-HHHcCCcEE-EeccCCccccc
Q 021609 4 TGVVAVYGNDGA-ITETK-KSPFSVKVGLAQMLRGGV---------IMDVVTPEQARV-AEEAGACAV-MALERVPADIR 70 (310)
Q Consensus 4 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~---------i~~~~~~~~A~~-~~~~Ga~~i-~~L~~~~~~~~ 70 (310)
+|+..+.|+.++ +++++ ..+|.+.+.... .++ +..-.+++.++. +...+++++ +++|+.++...
T Consensus 88 ~G~~~~vGs~~~~l~~~~~~~s~~~vr~~ap---~~~~~anlg~~ql~~~~~~~~~~~av~~~~a~al~Ihln~~~~~~~ 164 (368)
T 3vkj_A 88 FGIPMGVGSQRVAIEKAEARESFAIVRKVAP---TIPIIANLGMPQLVKGYGLKEFQDAIQMIEADAIAVHLNPAQEVFQ 164 (368)
T ss_dssp HTCCEECCCCHHHHHCGGGSHHHHHHHHHCS---SSCEEEEEEGGGGGTTCCHHHHHHHHHHTTCSEEEEECCHHHHHHS
T ss_pred hCCCeeeecchhccCCHHHHhhHHHHHHhCc---CcceecCcCeeecCCCCCHHHHHHHHHHhcCCCeEEEecchhhhhC
Confidence 578889999987 77776 567765553333 121 111133555544 444566665 58875433222
Q ss_pred ccCCCCCC--CCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCC
Q 021609 71 SQGGVARM--SDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRN 148 (310)
Q Consensus 71 ~~~G~~~~--~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t 148 (310)
. .|.... ...+.++.+++.+++||++|.. ++ + .+
T Consensus 165 p-~g~~~~~~~~~~~i~~i~~~~~vPVivK~v-G~-----------------------------------g-------~s 200 (368)
T 3vkj_A 165 P-EGEPEYQIYALEKLRDISKELSVPIIVKES-GN-----------------------------------G-------IS 200 (368)
T ss_dssp S-SCCCBCBTHHHHHHHHHHTTCSSCEEEECS-SS-----------------------------------C-------CC
T ss_pred C-CCCchhhHHHHHHHHHHHHHcCCCEEEEeC-CC-----------------------------------C-------CC
Confidence 1 122111 1467899999999999999963 21 0 12
Q ss_pred HHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcC-CCCEEE
Q 021609 149 LGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLG-RLPVVH 226 (310)
Q Consensus 149 ~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~-~iPVi~ 226 (310)
.++++++.++|+|+|.+.|+++|.. ..+|..|.... ...+..+..+-.+. .+....+.++++.. ++||+
T Consensus 201 ~~~A~~l~~aGad~I~V~g~GGt~~--~~iE~~R~~~~------~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~~ipvi- 271 (368)
T 3vkj_A 201 METAKLLYSYGIKNFDTSGQGGTNW--IAIEMIRDIRR------GNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLV- 271 (368)
T ss_dssp HHHHHHHHHTTCCEEECCCBTSBCH--HHHHHHHHHHT------TCTHHHHHHHTTTCSCBHHHHHHHHHHHSTTCEEE-
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCcc--cchhhhhcccc------cccchhhccccccccccHHHHHHHHHHHcCCCcEE-
Confidence 3556667777777777776655432 22333332100 00000000000011 22344555666555 58998
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccC--CCHH---HHHHHHHHHHhccCChhhhhhhhhhcccchh-------c
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKS--GDPV---KRAQAIVRAVTHYSDPEVLAEVSCGLGEAMV-------G 294 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a--~dp~---~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~-------~ 294 (310)
++|||+++.|+.+++.+|||+|++|++++.+ ..|. ...+.+.+.++.++..-++.+++++.+.... .
T Consensus 272 -a~GGI~~~~d~~kal~lGA~~v~ig~~~l~~~~~G~~~v~~~l~~l~~eL~~~m~~~G~~~i~el~~~~l~~~~~l~~~ 350 (368)
T 3vkj_A 272 -GSGGIRSGLDAAKAIALGADIAGMALPVLKSAIEGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIVILGKLKEW 350 (368)
T ss_dssp -EESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCEEECHHHHHH
T ss_pred -EECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCCHHHhccCCEEechhHHHH
Confidence 8999999999999999999999999998842 1232 2444555666555544444455554433222 1
Q ss_pred ccCccchhhhhcccC
Q 021609 295 LNLSDHKVERFASRS 309 (310)
Q Consensus 295 ~~~~~~~~~~~~~~~ 309 (310)
+..+.++..+|+.|+
T Consensus 351 ~~~r~~~~~~~~~~~ 365 (368)
T 3vkj_A 351 AEYRGINLSIYEKVR 365 (368)
T ss_dssp HHHHTCCHHHHHHHH
T ss_pred HHHcCCChHHHHhhh
Confidence 223445666666654
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-11 Score=116.00 Aligned_cols=194 Identities=14% Similarity=0.159 Sum_probs=129.3
Q ss_pred eccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 19 TKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
++...+.+..|++. +.+..++++++|+++.++|.-+++.- + ...+.+.+..+.+..++...
T Consensus 34 t~l~g~~l~~Pii~----ApM~~vte~~lA~A~a~~Gg~gvi~~---------~------~s~ee~~~~i~~~~~~~~~~ 94 (361)
T 3r2g_A 34 DRLGKLTLNLPVIS----ANMDTITESNMANFMHSKGAMGALHR---------F------MTIEENIQEFKKCKGPVFVS 94 (361)
T ss_dssp CTTSSCEESSCEEE----CCSTTTCSHHHHHHHHHTTCEEBCCS---------C------SCHHHHHHHHHTCCSCCBEE
T ss_pred EEECCEEcCCCEEE----CCCCCchHHHHHHHHHHcCCCEEEeC---------C------CCHHHHHHHHhhcceEEEEE
Confidence 35667778899888 55788999999999999997654221 1 12444333322333333332
Q ss_pred ccc--CcHHHHHHHHHcCCCEEEe--CCCCC--chhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCC
Q 021609 99 ARI--GHFVEAQILEAIGIDYVDE--SEVLT--PADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 99 ~~~--~~~~~a~~~~~aGad~Vi~--~~~~~--~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~ 171 (310)
... ...+.++.+.++|+|.|.. +.... ..+.++.+++..+++++++ .+.|.++++.+.++|+|+|.+....+
T Consensus 95 ~g~~~~~~e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~G- 173 (361)
T 3r2g_A 95 VGCTENELQRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGGG- 173 (361)
T ss_dssp ECSSHHHHHHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSSS-
T ss_pred cCCCHHHHHHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCCC-
Confidence 221 2356788999999998853 33222 2245566665445788888 59999999999999999999853322
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
..+++ +. . ... .+.+..+.++.+..+ ||+ +.|||+++.|+.+++.+|||+|+
T Consensus 174 -~~~~t----r~-------~------------~g~g~p~l~aI~~~~~~~~-PVI--AdGGI~~~~di~kALa~GAd~V~ 226 (361)
T 3r2g_A 174 -SVCST----RI-------K------------TGFGVPMLTCIQDCSRADR-SIV--ADGGIKTSGDIVKALAFGADFVM 226 (361)
T ss_dssp -SCHHH----HH-------H------------HCCCCCHHHHHHHHTTSSS-EEE--EESCCCSHHHHHHHHHTTCSEEE
T ss_pred -cCccc----cc-------c------------CCccHHHHHHHHHHHHhCC-CEE--EECCCCCHHHHHHHHHcCCCEEE
Confidence 11110 00 0 011 234566666665444 998 78999999999999999999999
Q ss_pred EccccccCC
Q 021609 251 VGSGVFKSG 259 (310)
Q Consensus 251 VGsai~~a~ 259 (310)
+||+|+.++
T Consensus 227 iGr~f~~t~ 235 (361)
T 3r2g_A 227 IGGMLAGSA 235 (361)
T ss_dssp ESGGGTTBT
T ss_pred EChHHhCCc
Confidence 999999864
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-12 Score=117.11 Aligned_cols=170 Identities=22% Similarity=0.246 Sum_probs=123.3
Q ss_pred HHHHHHHHcCCCEEEe----CCC--CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHh-----CCCEEEE--cC--CC
Q 021609 105 VEAQILEAIGIDYVDE----SEV--LTPADEENHINKHNFRIPFVCGCRNLGEALRRIRE-----GAAMIRT--KG--EA 169 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~----~~~--~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~-----Gad~V~v--~g--~~ 169 (310)
...+.+.++|++.|.. .+. -....+.+.+. ...-+++..+|+|.+|+.++.++ |-++|++ ++ +.
T Consensus 27 ~~~~ai~asg~eivtva~rR~~~~~~~~~~~~~~i~-~~~~lpntaG~~taeeAv~~a~lare~~gt~~iKlEvi~d~~~ 105 (268)
T 2htm_A 27 VMREAIAAAKAEVVTVSVRRVELKAPGHVGLLEALE-GVRLLPNTAGARTAEEAVRLARLGRLLTGERWVKLEVIPDPTY 105 (268)
T ss_dssp HHHHHHHHTTCSEEEEEEEECC-------CHHHHTT-TSEEEEBCTTCCSHHHHHHHHHHHHHHHCCSEEBCCCCSCTTT
T ss_pred HHHHHHHHhCCCEEEEEccccCCCCCCcccHHHHHh-hhhccCcccCCCCHHHHHHHHHhhhHhcCcceeeeeeccCccc
Confidence 3346677899998841 111 12245666665 22237889999999999997664 5566652 22 12
Q ss_pred CCcchHHHHHHHHhhccc-eEeecccChhHHHHhh-----------------hcc-CCcHHHHHHHhh-cCC-CCEEEeC
Q 021609 170 GTGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTFA-----------------KKI-AAPYDLVMQTKQ-LGR-LPVVHFA 228 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~~-----------------~~~-~~~~~~i~~i~~-~~~-iPVi~iA 228 (310)
...++.+++++.+.+.+. +.+++++.+|..+... .+. ....++++.+++ ..+ +||| +
T Consensus 106 l~pD~~~tv~aa~~L~k~Gf~Vlpy~~~D~~~ak~l~~~G~~aVmPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI--~ 183 (268)
T 2htm_A 106 LLPDPLETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGWGVRTRALLELFAREKASLPPVV--V 183 (268)
T ss_dssp TCCCHHHHHHHHHHHHHTTCEECCEECSCHHHHHHHHHHTCSCBEEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBE--E
T ss_pred cCcCHHHHHHHHHHHHHCCCEEeeccCCCHHHHHHHHhcCCCEEEecCccCcCCcccCCHHHHHHHHHhcCCCCeEE--E
Confidence 356778899999998777 8999888776543110 000 113566888887 678 9998 6
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
.|||.+++|+.+++++|||||+|||+|++++||..++++|+++++.++.
T Consensus 184 ~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~agr~ 232 (268)
T 2htm_A 184 DAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEAGRK 232 (268)
T ss_dssp ESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999987543
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.3e-13 Score=117.12 Aligned_cols=162 Identities=20% Similarity=0.277 Sum_probs=112.6
Q ss_pred HHHHHHHHhhcCcceeecccc--Cc-----HHHHHHHHHcCCCEEEeCC---CCCchhHHHHHHh-cCCCCcEEEecCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARI--GH-----FVEAQILEAIGIDYVDESE---VLTPADEENHINK-HNFRIPFVCGCRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~--~~-----~~~a~~~~~aGad~Vi~~~---~~~~~~~~~~i~~-~~~~i~~~v~~~t~ 149 (310)
+..++.+++.+++|++.++.- .. ...++.+.++|||+|+..+ .++..++.+.++. ...++.+++++++.
T Consensus 42 ~~~l~~v~~~~~~~v~aqd~~~~~~ga~tGei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~ 121 (219)
T 2h6r_A 42 FVDLRMIVENVNIPVYAQHIDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNI 121 (219)
T ss_dssp TTTHHHHHHHCCSCBEESCCCSCCSBSCTTCCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred HHHHHHHHHHcCCcEEEEECChhhcCCccCchHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 567788888889999997621 10 1237889999999997544 3555566555544 44689999999988
Q ss_pred HHHHHHHHhCCCEEEEcCCC--CCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEE
Q 021609 150 GEALRRIREGAAMIRTKGEA--GTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVH 226 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~g~~--~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~ 226 (310)
++..++.+.|++++.+++.. +||.- +.+.+++ ......+.+++.. ++|++
T Consensus 122 ~e~~~~~~~~~~~i~~~~~~~iGtG~~----------------~~t~~~~----------~~~~~~~~ir~~~~~~~ii- 174 (219)
T 2h6r_A 122 NTSKAVAALSPDCIAVEPPELIGTGIP----------------VSKANPE----------VVEGTVRAVKEINKDVKVL- 174 (219)
T ss_dssp HHHHHHTTTCCSEEEECCCC----------------------------------------CSHHHHHHHHHHCTTCEEE-
T ss_pred hHHHHHHhCCCCEEEEEeccccccCCC----------------CccCCHH----------HHHHHHHHHHhccCCCeEE-
Confidence 88888888899999988643 33310 0011111 0112233333333 68998
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
+.|||++++++..+.+.|+||++|||++++++||....++|++
T Consensus 175 -~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l~~ 217 (219)
T 2h6r_A 175 -CGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRELIK 217 (219)
T ss_dssp -ECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHHCC
T ss_pred -EEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHHHHH
Confidence 6899999999999999999999999999999999887776643
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-12 Score=116.34 Aligned_cols=179 Identities=17% Similarity=0.147 Sum_probs=119.3
Q ss_pred HHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHHhhcCcceeecccc------CcHH
Q 021609 45 PEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIKQSVTIPVMAKARI------GHFV 105 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~~~~~iPv~vk~~~------~~~~ 105 (310)
.+.++.+.++|||.| +|. |. |..+++. +|.+....++.++++|+. +|+++.... |...
T Consensus 31 ~~~~~~l~~~GaD~i-ElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~ 107 (252)
T 3tha_A 31 EAFLQRLDQSPIDIL-ELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTK--KALVFMVYYNLIFSYGLEK 107 (252)
T ss_dssp HHHHHTGGGSSCSEE-EEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCS--SEEEEECCHHHHHHHCHHH
T ss_pred HHHHHHHHHcCCCEE-EECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcC--CCEEEEeccCHHHHhhHHH
Confidence 367888899999976 664 21 3333222 244433445566666544 899886543 3356
Q ss_pred HHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCC-HHHHHHHHHhCCCEEEEcCCC-CCcchHHHHHHH
Q 021609 106 EAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRN-LGEALRRIREGAAMIRTKGEA-GTGNIIEAVRHV 181 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t-~~ea~~~~~~Gad~V~v~g~~-~~~~~~~~~~~~ 181 (310)
+++.+.++|+|+++.++.. +..++.+.+++++.....++..+| .+.+++..+.+..+|.+-... -||.-.
T Consensus 108 F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~------ 181 (252)
T 3tha_A 108 FVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKS------ 181 (252)
T ss_dssp HHHHHHHTTEEEEECTTCCGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEECCSCSSSCSH------
T ss_pred HHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEEecCCCCCccc------
Confidence 7899999999999988752 345666677777777666666655 555665666666676544322 233200
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.. .....++++++++..++|++ .++||++++++.++.+ +||||+|||+|++
T Consensus 182 ----------------~~------~~~~~~~v~~vr~~~~~Pv~--vGfGIst~e~a~~~~~-~ADGVIVGSAiVk 232 (252)
T 3tha_A 182 ----------------VE------EAILQDKVKEIRSFTNLPIF--VGFGIQNNQDVKRMRK-VADGVIVGTSIVK 232 (252)
T ss_dssp ----------------HH------HHHHHHHHHHHHTTCCSCEE--EESSCCSHHHHHHHTT-TSSEEEECHHHHH
T ss_pred ----------------CC------CHHHHHHHHHHHHhcCCcEE--EEcCcCCHHHHHHHHh-cCCEEEECHHHHH
Confidence 00 01124678888888889998 6899999999998766 6999999999986
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-11 Score=106.59 Aligned_cols=156 Identities=14% Similarity=0.139 Sum_probs=116.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcc-eeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIP-VMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iP-v~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
++++++.++|++.+ ++. ... ....+.++++++.+.-. +..... -..++++.+.++||++++.+.
T Consensus 50 ~~a~al~~gGi~~i-Evt-------~~t----~~a~e~I~~l~~~~~~~~iGaGTV-lt~~~a~~Ai~AGA~fIvsP~-- 114 (232)
T 4e38_A 50 PLGKVLAENGLPAA-EIT-------FRS----DAAVEAIRLLRQAQPEMLIGAGTI-LNGEQALAAKEAGATFVVSPG-- 114 (232)
T ss_dssp HHHHHHHHTTCCEE-EEE-------TTS----TTHHHHHHHHHHHCTTCEEEEECC-CSHHHHHHHHHHTCSEEECSS--
T ss_pred HHHHHHHHCCCCEE-EEe-------CCC----CCHHHHHHHHHHhCCCCEEeECCc-CCHHHHHHHHHcCCCEEEeCC--
Confidence 67889999999987 541 110 11157888888876323 333332 246889999999999997554
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
...++.+.+++ .+++++.++.|+.|+.++.++|+|+|++++....
T Consensus 115 ~~~~vi~~~~~--~gi~~ipGv~TptEi~~A~~~Gad~vK~FPa~~~--------------------------------- 159 (232)
T 4e38_A 115 FNPNTVRACQE--IGIDIVPGVNNPSTVEAALEMGLTTLKFFPAEAS--------------------------------- 159 (232)
T ss_dssp CCHHHHHHHHH--HTCEEECEECSHHHHHHHHHTTCCEEEECSTTTT---------------------------------
T ss_pred CCHHHHHHHHH--cCCCEEcCCCCHHHHHHHHHcCCCEEEECcCccc---------------------------------
Confidence 24556666654 4889999999999999999999999999764211
Q ss_pred ccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 205 KIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
...+.++.++.. .++|++ +.||| +++++.+++++|+.++++||.++.
T Consensus 160 ---gG~~~lkal~~p~p~ip~~--ptGGI-~~~n~~~~l~aGa~~~vgGs~l~~ 207 (232)
T 4e38_A 160 ---GGISMVKSLVGPYGDIRLM--PTGGI-TPSNIDNYLAIPQVLACGGTWMVD 207 (232)
T ss_dssp ---THHHHHHHHHTTCTTCEEE--EBSSC-CTTTHHHHHTSTTBCCEEECGGGC
T ss_pred ---cCHHHHHHHHHHhcCCCee--eEcCC-CHHHHHHHHHCCCeEEEECchhcC
Confidence 124567777664 478998 78999 699999999999999999999985
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-11 Score=114.10 Aligned_cols=239 Identities=13% Similarity=0.096 Sum_probs=148.6
Q ss_pred eeccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 18 ETKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
.++...+.+..|++. ..+..+++.++|+++.+.|.-.++..+ . +. ...+.++++++ .+.|+.+
T Consensus 37 ~t~i~g~~l~~Pi~~----a~mag~s~~~la~a~~~~gg~g~~~~~-~----~~-------~~~~~i~~~~~-~g~~v~v 99 (336)
T 1ypf_A 37 TVTLGKHKFKLPVVP----ANMQTIIDERIATYLAENNYFYIMHRF-Q----PE-------KRISFIRDMQS-RGLIASI 99 (336)
T ss_dssp CEEETTEEESSSEEE----CSSTTTCCHHHHHHHHHTTCCCCCCCS-S----GG-------GHHHHHHHHHH-TTCCCEE
T ss_pred eEEECCEEecCcEEE----CCCCCCChHHHHHHHHhCCCEEEecCC-C----CH-------HHHHHHHHHHh-cCCeEEE
Confidence 444556778888888 455567889998887777654432110 0 00 01344555543 3667777
Q ss_pred ccccC--cHHHHHHHHHcC--CCEEEe--CCCC--CchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCC
Q 021609 98 KARIG--HFVEAQILEAIG--IDYVDE--SEVL--TPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 98 k~~~~--~~~~a~~~~~aG--ad~Vi~--~~~~--~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
..... ..+.++.+.++| ++.+.. .... ...+.++.+++.-.+.+++.+ +.+.++++++.++|+|.|.+.+.
T Consensus 100 ~~g~~~~~~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~h 179 (336)
T 1ypf_A 100 SVGVKEDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIG 179 (336)
T ss_dssp EECCSHHHHHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred eCCCCHHHHHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecC
Confidence 64222 235567788899 999842 2211 123445555554335666666 88999999999999999998654
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CC--cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AA--PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG 245 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~--~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G 245 (310)
+++.. ... + . ... .+ +++.+.++++..++||+ ++|||+++.|+.+++.+|
T Consensus 180 gG~~~--~~~-----------------~-----~-~~~g~~g~~~~~l~~v~~~~~ipVI--a~GGI~~g~Dv~kalalG 232 (336)
T 1ypf_A 180 PGKVC--ITK-----------------I-----K-TGFGTGGWQLAALRWCAKAASKPII--ADGGIRTNGDVAKSIRFG 232 (336)
T ss_dssp CSTTC--HHH-----------------H-----H-HSCSSTTCHHHHHHHHHHTCSSCEE--EESCCCSTHHHHHHHHTT
T ss_pred CCcee--ecc-----------------c-----c-cCcCCchhHHHHHHHHHHHcCCcEE--EeCCCCCHHHHHHHHHcC
Confidence 33210 000 0 0 011 22 47788888887899998 789999999999999999
Q ss_pred CCEEEEccccccCCCHHH--------HHHHHHHHHhccC-----------C---------hhhhhhhhhhcccchhcccC
Q 021609 246 CDGVFVGSGVFKSGDPVK--------RAQAIVRAVTHYS-----------D---------PEVLAEVSCGLGEAMVGLNL 297 (310)
Q Consensus 246 adgV~VGsai~~a~dp~~--------~a~~l~~~i~~~~-----------~---------~~~~~~~~~~~~~~~~~~~~ 297 (310)
||+|++|++++.++.... ..+.+. .+-.+. + .+.+..+...+...|-.+|.
T Consensus 233 AdaV~iGr~~l~t~Es~~~~~~~~g~~~k~~~-g~~~~~~~g~~~~~~g~~~~~~~~g~~~~~~~~l~~el~~~m~~~G~ 311 (336)
T 1ypf_A 233 ATMVMIGSLFAGHEESPGETIEKDGKLYKEYF-GSASEFQKGEKKNVEGKKMFVEHKGSLEDTLIEMEQDLQSSISYAGG 311 (336)
T ss_dssp CSEEEESGGGTTCTTSSSCCC------------------------CTTSCCSSSSCCCCHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCEEEeChhhhccccCCCceeeeCCeEeeeee-cccchhhccCccccccceeeecccccHHHHHHHHHHHHHHHHHHhCc
Confidence 999999999995321100 001001 110000 0 14456788888888988888
Q ss_pred ccch
Q 021609 298 SDHK 301 (310)
Q Consensus 298 ~~~~ 301 (310)
++++
T Consensus 312 ~~i~ 315 (336)
T 1ypf_A 312 TKLD 315 (336)
T ss_dssp SBGG
T ss_pred ccHH
Confidence 8775
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=99.38 E-value=7.4e-12 Score=113.26 Aligned_cols=188 Identities=18% Similarity=0.158 Sum_probs=117.2
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--CcH---HHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--GHF---VEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~~---~~a~~~~~aGad~Vi 119 (310)
+..+.+.++|++.+ .+- |. .. ..|......++.++ ....+++.+... +.. .+++.+.++|.+.++
T Consensus 27 ~~~~~l~~~Gad~i-elg~pr---~~-~~g~~~~~~~~~l~----~~~~~~~pn~~~~~~~~~~~~f~~~a~~agg~~~i 97 (264)
T 1xm3_A 27 IQKEAVAVSESDIL-TFAVRR---MN-IFEASQPNFLEQLD----LSKYTLLPNTAGASTAEEAVRIARLAKASGLCDMI 97 (264)
T ss_dssp HHHHHHHHHTCSEE-EEETTS---ST-TC-------CTTCC----GGGSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSE
T ss_pred HHHHHHHHcCCeEE-EEcccc---cc-cCCCCHHHHHHHHH----hcCCeEcCCccccCCHHHHHHHHHHHHHcCCCCeE
Confidence 45678888999977 442 10 00 00111111122222 234555555432 212 356777777554442
Q ss_pred ----eCCC-C---CchhHHHHHHhc-CCCCcEE-EecCCHHHHHHHHHhCCCEEEEcCC-CCCcchHHHHHHHHhhccce
Q 021609 120 ----ESEV-L---TPADEENHINKH-NFRIPFV-CGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 120 ----~~~~-~---~~~~~~~~i~~~-~~~i~~~-v~~~t~~ea~~~~~~Gad~V~v~g~-~~~~~~~~~~~~~r~~~~~~ 188 (310)
..+. . +..++.+.+++. +.++.++ ..+++.++++++.+.|+++|...+. .+++.
T Consensus 98 ~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~~~~~~~Gt~~--------------- 162 (264)
T 1xm3_A 98 KVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQ--------------- 162 (264)
T ss_dssp EECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCCC---------------
T ss_pred EEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEEECCcccCCCC---------------
Confidence 2322 1 123455555442 3365555 6678889999999999999844232 22110
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
+ ....+.++++++..++||+ +.|||++++|+.+++++|||||+|||+|++++||...+++|
T Consensus 163 ----------------~-~~~~~~l~~i~~~~~iPvi--v~gGI~t~eda~~~~~~GAdgViVGSAi~~a~dp~~~~~~l 223 (264)
T 1xm3_A 163 ----------------G-ILNPLNLSFIIEQAKVPVI--VDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAM 223 (264)
T ss_dssp ----------------C-CSCHHHHHHHHHHCSSCBE--EESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHH
T ss_pred ----------------C-CCCHHHHHHHHhcCCCCEE--EEeCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHH
Confidence 1 1125567777777789998 56999999999999999999999999999999999999999
Q ss_pred HHHHhccC
Q 021609 269 VRAVTHYS 276 (310)
Q Consensus 269 ~~~i~~~~ 276 (310)
++.++...
T Consensus 224 ~~~v~~~~ 231 (264)
T 1xm3_A 224 KLAVEAGR 231 (264)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887543
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=118.04 Aligned_cols=196 Identities=16% Similarity=0.161 Sum_probs=120.6
Q ss_pred HHHHHHHHHcCCcEEEecc-CC-------ccccc----c-cCCCCCCCCHHHHHHHHhhcCcceeecccc------CcHH
Q 021609 45 PEQARVAEEAGACAVMALE-RV-------PADIR----S-QGGVARMSDPQLIKEIKQSVTIPVMAKARI------GHFV 105 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~-~~-------~~~~~----~-~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~------~~~~ 105 (310)
.+.++.++++ +|+| .|. |. |..++ + ..|.+....++.++++|+.+++|+++.... +...
T Consensus 33 ~~~~~~l~~~-aD~I-ElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~ 110 (271)
T 1ujp_A 33 LQAVEEVLPY-ADLL-EIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPER 110 (271)
T ss_dssp HHHHHHHGGG-CSSE-EEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHH
T ss_pred HHHHHHHHhc-CCEE-EECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHH
Confidence 3678888888 9987 553 21 11111 0 123322223578899998889999984322 2346
Q ss_pred HHHHHHHcCCCEEEeCCC--CCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcC-CCCCcchHHHHHHH
Q 021609 106 EAQILEAIGIDYVDESEV--LTPADEENHINKHNFR-IPFVCGCRNLGEALRRIREGAAMIRTKG-EAGTGNIIEAVRHV 181 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~--~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g-~~~~~~~~~~~~~~ 181 (310)
+++.+.++|+|+++..+. .+..++.+.+++++.. +.++....+.+.+....+.+..++.+.. .+.||.-.
T Consensus 111 f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~vs~~G~TG~~~------ 184 (271)
T 1ujp_A 111 FFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMRE------ 184 (271)
T ss_dssp HHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC--------------
T ss_pred HHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEEecCcccCCCC------
Confidence 788899999999986664 2355666777667665 4444445556655555555555443322 22233200
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCH
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp 261 (310)
.......++++++++..++||+ ++|||+|++++.++ .|||||+|||+|++....
T Consensus 185 ----------------------~~~~~~~~~v~~vr~~~~~Pv~--vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~~~ 238 (271)
T 1ujp_A 185 ----------------------RLPEEVKDLVRRIKARTALPVA--VGFGVSGKATAAQA--AVADGVVVGSALVRALEE 238 (271)
T ss_dssp --------------------------CCHHHHHHHHTTCCSCEE--EESCCCSHHHHHHH--TTSSEEEECHHHHHHHHT
T ss_pred ----------------------CCCccHHHHHHHHHhhcCCCEE--EEcCCCCHHHHHHh--cCCCEEEEChHHhcccch
Confidence 0012346788999988899998 68999999999996 899999999999973210
Q ss_pred HHHHHHHHHHHhc
Q 021609 262 VKRAQAIVRAVTH 274 (310)
Q Consensus 262 ~~~a~~l~~~i~~ 274 (310)
...+++|.+.++.
T Consensus 239 ~~~~~~fv~~l~~ 251 (271)
T 1ujp_A 239 GRSLAPLLQEIRQ 251 (271)
T ss_dssp TCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 0134555555543
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=5.4e-11 Score=105.02 Aligned_cols=156 Identities=10% Similarity=0.120 Sum_probs=112.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++++.++|++.+ ++ +... ....+.++++++.+ ++.+.....+ ..++++.+.++|||+|+.+.
T Consensus 33 ~~~~al~~gGv~~i-el-------~~k~----~~~~~~i~~l~~~~~~l~vgaGtvl-~~d~~~~A~~aGAd~v~~p~-- 97 (224)
T 1vhc_A 33 PLADTLAKNGLSVA-EI-------TFRS----EAAADAIRLLRANRPDFLIAAGTVL-TAEQVVLAKSSGADFVVTPG-- 97 (224)
T ss_dssp HHHHHHHHTTCCEE-EE-------ETTS----TTHHHHHHHHHHHCTTCEEEEESCC-SHHHHHHHHHHTCSEEECSS--
T ss_pred HHHHHHHHcCCCEE-EE-------eccC----chHHHHHHHHHHhCcCcEEeeCcEe-eHHHHHHHHHCCCCEEEECC--
Confidence 67899999999976 66 2111 11146777787776 4444444432 45889999999999997442
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
...+..+..++ .+...+++++|..|+.++.+.|+|||++++...
T Consensus 98 ~d~~v~~~ar~--~g~~~i~Gv~t~~e~~~A~~~Gad~vk~Fpa~~---------------------------------- 141 (224)
T 1vhc_A 98 LNPKIVKLCQD--LNFPITPGVNNPMAIEIALEMGISAVKFFPAEA---------------------------------- 141 (224)
T ss_dssp CCHHHHHHHHH--TTCCEECEECSHHHHHHHHHTTCCEEEETTTTT----------------------------------
T ss_pred CCHHHHHHHHH--hCCCEEeccCCHHHHHHHHHCCCCEEEEeeCcc----------------------------------
Confidence 23444455544 566666779999999999999999999975210
Q ss_pred ccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~a 258 (310)
....+.++.++... ++|++ +.||| +++++.+++++ |+++|. ||+|+++
T Consensus 142 --~gG~~~lk~l~~~~~~ipvv--aiGGI-~~~N~~~~l~agga~~v~-gS~i~~~ 191 (224)
T 1vhc_A 142 --SGGVKMIKALLGPYAQLQIM--PTGGI-GLHNIRDYLAIPNIVACG-GSWFVEK 191 (224)
T ss_dssp --TTHHHHHHHHHTTTTTCEEE--EBSSC-CTTTHHHHHTSTTBCCEE-ECGGGCH
T ss_pred --ccCHHHHHHHHhhCCCCeEE--EECCc-CHHHHHHHHhcCCCEEEE-EchhcCc
Confidence 01144567777655 79998 66999 69999999998 999999 9999974
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=99.36 E-value=5.5e-12 Score=111.71 Aligned_cols=187 Identities=14% Similarity=0.117 Sum_probs=122.8
Q ss_pred HHHHHHHHcCCcEEEecc-----CCcccccccCCCCCCCCHHHHHHHHhh--cCcceeeccccC-cHHHHHHHHHcCCCE
Q 021609 46 EQARVAEEAGACAVMALE-----RVPADIRSQGGVARMSDPQLIKEIKQS--VTIPVMAKARIG-HFVEAQILEAIGIDY 117 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-----~~~~~~~~~~G~~~~~~~~~i~~i~~~--~~iPv~vk~~~~-~~~~a~~~~~aGad~ 117 (310)
+..+.+.++|++++ +++ -.|.. .+| ++.++.+|+. .++|+-+...+. ....++.+.++|+|.
T Consensus 21 ~~i~~l~~~g~d~~-h~DVmDg~Fvpn~--~~G-------~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aGad~ 90 (228)
T 3ovp_A 21 AECLRMLDSGADYL-HLDVMDGHFVPNI--TFG-------HPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQ 90 (228)
T ss_dssp HHHHHHHHTTCSCE-EEEEEBSSSSSCB--CBC-------HHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHTCSE
T ss_pred HHHHHHHHcCCCEE-EEEecCCCcCccc--ccC-------HHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcCCCE
Confidence 67778899999987 443 11111 133 7899999988 488988876554 234567888999999
Q ss_pred EE-eCCC-CCchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEee
Q 021609 118 VD-ESEV-LTPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 118 Vi-~~~~-~~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
|. .... .......+.++++ ++.+++.+ .|..+........+|+|.+.. +++++-
T Consensus 91 itvH~Ea~~~~~~~i~~i~~~--G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pGf~Gq------------------ 150 (228)
T 3ovp_A 91 YTFHLEATENPGALIKDIREN--GMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQ------------------ 150 (228)
T ss_dssp EEEEGGGCSCHHHHHHHHHHT--TCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTTTCSC------------------
T ss_pred EEEccCCchhHHHHHHHHHHc--CCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCCCCCc------------------
Confidence 95 2222 2345566666554 44444443 344333332223478776532 222221
Q ss_pred cccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
. -....++.++++++.. ++|+. ..||| +++++.++.++|||.+++||+|++++||...+++|++
T Consensus 151 -~-----------f~~~~l~ki~~lr~~~~~~~I~--VdGGI-~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~ 215 (228)
T 3ovp_A 151 -K-----------FMEDMMPKVHWLRTQFPSLDIE--VDGGV-GPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRN 215 (228)
T ss_dssp -C-----------CCGGGHHHHHHHHHHCTTCEEE--EESSC-STTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHH
T ss_pred -c-----------cCHHHHHHHHHHHHhcCCCCEE--EeCCc-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence 0 0112245566666543 57777 46999 5999999999999999999999999999999999998
Q ss_pred HHhccCC
Q 021609 271 AVTHYSD 277 (310)
Q Consensus 271 ~i~~~~~ 277 (310)
.++++..
T Consensus 216 ~~~~~~~ 222 (228)
T 3ovp_A 216 VCSEAAQ 222 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8876643
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=99.35 E-value=6.2e-12 Score=109.17 Aligned_cols=154 Identities=21% Similarity=0.225 Sum_probs=103.1
Q ss_pred HHHHHHHHhhc-CcceeeccccCc--HHHHHHHHHcCCCEEEeCCCC---CchhHHHHHHhcCCCCcEEEecC---CHHH
Q 021609 81 PQLIKEIKQSV-TIPVMAKARIGH--FVEAQILEAIGIDYVDESEVL---TPADEENHINKHNFRIPFVCGCR---NLGE 151 (310)
Q Consensus 81 ~~~i~~i~~~~-~iPv~vk~~~~~--~~~a~~~~~aGad~Vi~~~~~---~~~~~~~~i~~~~~~i~~~v~~~---t~~e 151 (310)
++.++++++.+ +.|+.+.....+ ...++.+.++|||+|..+... ...++.+.++++ ++.+++++. |+.+
T Consensus 41 ~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~~~--g~~~gv~~~s~~~p~~ 118 (207)
T 3ajx_A 41 LSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQAH--NKGVVVDLIGIEDKAT 118 (207)
T ss_dssp THHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHH--TCEEEEECTTCSSHHH
T ss_pred HHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHc--CCceEEEEecCCChHH
Confidence 67899998887 889887443332 344788999999999643322 233444555443 444556554 6666
Q ss_pred -HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcH-HHHHHHhhcCCCCEEEeCC
Q 021609 152 -ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPY-DLVMQTKQLGRLPVVHFAA 229 (310)
Q Consensus 152 -a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~-~~i~~i~~~~~iPVi~iA~ 229 (310)
+..+.+.|+|+|+++.. .++. .....+. +.++++++. ++|++ +.
T Consensus 119 ~~~~~~~~g~d~v~~~~~-~~~~------------------------------~~g~~~~~~~i~~~~~~-~~pi~--v~ 164 (207)
T 3ajx_A 119 RAQEVRALGAKFVEMHAG-LDEQ------------------------------AKPGFDLNGLLAAGEKA-RVPFS--VA 164 (207)
T ss_dssp HHHHHHHTTCSEEEEECC-HHHH------------------------------TSTTCCTHHHHHHHHHH-TSCEE--EE
T ss_pred HHHHHHHhCCCEEEEEec-cccc------------------------------ccCCCchHHHHHHhhCC-CCCEE--EE
Confidence 55566779999965531 1000 0001112 444444432 68998 56
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
|||+ ++++.+++++|||+++|||+|++++||...+++|++.
T Consensus 165 GGI~-~~~~~~~~~aGad~vvvGsaI~~~~dp~~~~~~~~~~ 205 (207)
T 3ajx_A 165 GGVK-VATIPAVQKAGAEVAVAGGAIYGAADPAAAAKELRAA 205 (207)
T ss_dssp SSCC-GGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHT
T ss_pred CCcC-HHHHHHHHHcCCCEEEEeeeccCCCCHHHHHHHHHHH
Confidence 9995 9999999999999999999999999999998888654
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.4e-11 Score=104.90 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=113.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++++.++|++.+ ++ +... ....+.++++++.+. +.+..+. +-..++++.+.++|||+|+.+.
T Consensus 32 ~~~~al~~gGv~~i-el-------~~k~----~~~~~~i~~l~~~~~~~~vgagt-vi~~d~~~~A~~aGAd~v~~p~-- 96 (214)
T 1wbh_A 32 PMAKALVAGGVRVL-NV-------TLRT----ECAVDAIRAIAKEVPEAIVGAGT-VLNPQQLAEVTEAGAQFAISPG-- 96 (214)
T ss_dssp HHHHHHHHTTCCEE-EE-------ESCS----TTHHHHHHHHHHHCTTSEEEEES-CCSHHHHHHHHHHTCSCEEESS--
T ss_pred HHHHHHHHcCCCEE-EE-------eCCC----hhHHHHHHHHHHHCcCCEEeeCE-EEEHHHHHHHHHcCCCEEEcCC--
Confidence 67899999999976 66 2111 111467777877763 3344443 3345889999999999997443
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
...++.+..+. .++..+.+++|..|+.++.+.|+|||++++...
T Consensus 97 ~d~~v~~~~~~--~g~~~i~G~~t~~e~~~A~~~Gad~v~~Fpa~~---------------------------------- 140 (214)
T 1wbh_A 97 LTEPLLKAATE--GTIPLIPGISTVSELMLGMDYGLKEFKFFPAEA---------------------------------- 140 (214)
T ss_dssp CCHHHHHHHHH--SSSCEEEEESSHHHHHHHHHTTCCEEEETTTTT----------------------------------
T ss_pred CCHHHHHHHHH--hCCCEEEecCCHHHHHHHHHCCCCEEEEecCcc----------------------------------
Confidence 34455555544 456677789999999999999999999975210
Q ss_pred ccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~a 258 (310)
....+.++.++... ++|++ +.||| +++++.+++++ |+++|. ||+|+++
T Consensus 141 --~gG~~~lk~i~~~~~~ipvv--aiGGI-~~~n~~~~l~agg~~~v~-gS~i~~~ 190 (214)
T 1wbh_A 141 --NGGVKALQAIAGPFSQVRFC--PTGGI-SPANYRDYLALKSVLCIG-GSWLVPA 190 (214)
T ss_dssp --TTHHHHHHHHHTTCTTCEEE--EBSSC-CTTTHHHHHTSTTBSCEE-EGGGSCH
T ss_pred --ccCHHHHHHHhhhCCCCeEE--EECCC-CHHHHHHHHhcCCCeEEE-eccccCh
Confidence 01145677777655 79998 66999 69999999998 999999 9999974
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-11 Score=109.46 Aligned_cols=182 Identities=21% Similarity=0.264 Sum_probs=119.4
Q ss_pred cccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHh--hcCcceeeccccCc----------
Q 021609 37 GVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQ--SVTIPVMAKARIGH---------- 103 (310)
Q Consensus 37 g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~--~~~iPv~vk~~~~~---------- 103 (310)
+.+.+..++ ..++.+.+.|+++++ .++ ..++.+++ ..++|++++...+.
T Consensus 39 ~p~~~~~~~~~~~~~~~~~g~~~i~-~~~-----------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~ 100 (273)
T 2qjg_A 39 GPIKGLIDIRKTVNDVAEGGANAVL-LHK-----------------GIVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKV 100 (273)
T ss_dssp CSCTTSSSHHHHHHHHHHHTCSEEE-ECH-----------------HHHHSCCCSSSCCCEEEEECEECCTTSSSTTCCE
T ss_pred CCCcchhhHHHHHHHHHhcCCCEEE-eCH-----------------HHHHHHHHhhcCCCCEEEEEcCCCcCCCCcccch
Confidence 345556666 578899999999873 221 11111111 12567666432211
Q ss_pred -HHHHHHHHHcCCCEE--E-eCCCCCch-------hHHHHHHhcCCCCcEEEec-------------CCHHHH-HHHHHh
Q 021609 104 -FVEAQILEAIGIDYV--D-ESEVLTPA-------DEENHINKHNFRIPFVCGC-------------RNLGEA-LRRIRE 158 (310)
Q Consensus 104 -~~~a~~~~~aGad~V--i-~~~~~~~~-------~~~~~i~~~~~~i~~~v~~-------------~t~~ea-~~~~~~ 158 (310)
.+.++.+.++|+|.| . .....+.. ++.+.+++ .++++++.+ ++.+++ +.+.+.
T Consensus 101 ~~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~--~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~ 178 (273)
T 2qjg_A 101 IVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEY--WGMPLIAMMYPRGKHIQNERDPELVAHAARLGAEL 178 (273)
T ss_dssp ECSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHH--HTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHH--cCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHc
Confidence 456788999999999 3 22223322 22333332 355555443 333555 667789
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCC--HH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVAT--PA 236 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t--~~ 236 (310)
|+|+|.++.. .+++.++++++..++|++ +.|||++ .+
T Consensus 179 Gad~i~~~~~---------------------------------------~~~~~l~~i~~~~~ipvv--a~GGi~~~~~~ 217 (273)
T 2qjg_A 179 GADIVKTSYT---------------------------------------GDIDSFRDVVKGCPAPVV--VAGGPKTNTDE 217 (273)
T ss_dssp TCSEEEECCC---------------------------------------SSHHHHHHHHHHCSSCEE--EECCSCCSSHH
T ss_pred CCCEEEECCC---------------------------------------CCHHHHHHHHHhCCCCEE--EEeCCCCCCHH
Confidence 9999998631 124556667766789998 6799984 67
Q ss_pred H----HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChh
Q 021609 237 D----AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPE 279 (310)
Q Consensus 237 d----~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~ 279 (310)
| +.+++++|++||.+||+|++++||...++++.+.++.....+
T Consensus 218 ~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~~~~~~~~~~~ 264 (273)
T 2qjg_A 218 EFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVCKIVHENADVE 264 (273)
T ss_dssp HHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHHHHHHHhcCCCHH
Confidence 7 666678999999999999999999999999999998766544
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=109.83 Aligned_cols=185 Identities=16% Similarity=0.177 Sum_probs=120.8
Q ss_pred HHHHHHHHcCCcEE-Eec-c--CCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC-cHHHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAV-MAL-E--RVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG-HFVEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~--~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~-~~~~a~~~~~aGad~Vi 119 (310)
+..+.+.++|++++ +++ + -.|.. .+| +..++.+|+.+ ++|+-+.+-+. ....++.+.++|||.+.
T Consensus 44 ~~i~~l~~~G~d~lHvDVmDg~FVpni--t~G-------~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~it 114 (246)
T 3inp_A 44 DDVKAVLAAGADNIHFDVMDNHYVPNL--TFG-------PMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIV 114 (246)
T ss_dssp HHHHHHHHTTCCCEEEEEEBSSSSSCB--CCC-------HHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHcCCCEEEEEecCCCcCcch--hcC-------HHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEE
Confidence 67888899999998 333 1 11211 223 78999999988 99999876654 34567888999999996
Q ss_pred eC-CC-CCchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecc
Q 021609 120 ES-EV-LTPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 120 ~~-~~-~~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
.. .. ..+....+.+++ .++.+++.. .|..+..+.....+|+|.+.. +++++-
T Consensus 115 vH~Ea~~~~~~~i~~ir~--~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ-------------------- 172 (246)
T 3inp_A 115 FHPEASEHIDRSLQLIKS--FGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQ-------------------- 172 (246)
T ss_dssp ECGGGCSCHHHHHHHHHT--TTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--C--------------------
T ss_pred EccccchhHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCCc--------------------
Confidence 32 22 234455666654 454555543 354444333333688876542 222210
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
+-....++-++++++. .++++. ..||| +++++.++.++|||.+++||+|++++||...+++|
T Consensus 173 ----------~fi~~~l~KI~~lr~~~~~~~~~~~I~--VDGGI-~~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l 239 (246)
T 3inp_A 173 ----------KFIPAMLDKAKEISKWISSTDRDILLE--IDGGV-NPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKM 239 (246)
T ss_dssp ----------CCCTTHHHHHHHHHHHHHHHTSCCEEE--EESSC-CTTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHH
T ss_pred ----------ccchHHHHHHHHHHHHHHhcCCCeeEE--EECCc-CHHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHH
Confidence 0012224444444432 357777 46999 59999999999999999999999999999999988
Q ss_pred HHHHhc
Q 021609 269 VRAVTH 274 (310)
Q Consensus 269 ~~~i~~ 274 (310)
++.+.+
T Consensus 240 ~~~i~~ 245 (246)
T 3inp_A 240 RDELNK 245 (246)
T ss_dssp HHHHHT
T ss_pred HHHHhh
Confidence 887653
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=8.2e-12 Score=115.27 Aligned_cols=78 Identities=15% Similarity=0.207 Sum_probs=67.4
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCG 287 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~ 287 (310)
++.++++++.. ++||+ ++|||+|++|+.+++.+|||+|++||+++. .+|+ ..+++.+.++.++...++.++++.
T Consensus 229 ~~~i~~v~~~~~~~ipvi--~~GGI~~~~da~~~l~~GAd~V~vg~~~l~-~~p~-~~~~i~~~l~~~l~~~g~~si~e~ 304 (311)
T 1jub_A 229 LANVRAFYTRLKPEIQII--GTGGIETGQDAFEHLLCGATMLQIGTALHK-EGPA-IFDRIIKELEEIMNQKGYQSIADF 304 (311)
T ss_dssp HHHHHHHHTTSCTTSEEE--EESSCCSHHHHHHHHHHTCSEEEECHHHHH-HCTH-HHHHHHHHHHHHHHHHTCCSGGGT
T ss_pred HHHHHHHHHhcCCCCCEE--EECCCCCHHHHHHHHHcCCCEEEEchHHHh-cCcH-HHHHHHHHHHHHHHHcCCCCHHHH
Confidence 56788888877 89998 789999999999999999999999999995 3675 556688889999988889999998
Q ss_pred cccc
Q 021609 288 LGEA 291 (310)
Q Consensus 288 ~~~~ 291 (310)
.|..
T Consensus 305 ~g~~ 308 (311)
T 1jub_A 305 HGKL 308 (311)
T ss_dssp TTCC
T ss_pred hChh
Confidence 8754
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-11 Score=109.02 Aligned_cols=182 Identities=18% Similarity=0.193 Sum_probs=115.9
Q ss_pred cccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCC
Q 021609 37 GVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad 116 (310)
|+-..-.+.+.++.++++|+|.+ .+. -..|.+....++.++++|+ +++|+++..... .. ..+|+|
T Consensus 15 gDP~~~~t~~~~~~l~~~GaD~i-elG-------~S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~--n~----i~~G~d 79 (240)
T 1viz_A 15 LDPNKDLPDEQLEILCESGTDAV-IIG-------GSDGVTEDNVLRMMSKVRR-FLVPCVLEVSAI--EA----IVPGFD 79 (240)
T ss_dssp ECTTSCCCHHHHHHHHTSCCSEE-EEC-------C----CHHHHHHHHHHHTT-SSSCEEEECSCG--GG----CCSCCS
T ss_pred eCCCccccHHHHHHHHHcCCCEE-EEC-------CCCCCCHHHHHHHHHHhhC-cCCCEEEecCcc--cc----ccCCCC
Confidence 44333456688999999999987 542 1123333334678888988 899999865542 11 178999
Q ss_pred EEEeCCCCC--chhH-----HHHHHhcC-----CCCcE----EEecC-------------CHHHHHHHHHhCC----CEE
Q 021609 117 YVDESEVLT--PADE-----ENHINKHN-----FRIPF----VCGCR-------------NLGEALRRIREGA----AMI 163 (310)
Q Consensus 117 ~Vi~~~~~~--~~~~-----~~~i~~~~-----~~i~~----~v~~~-------------t~~ea~~~~~~Ga----d~V 163 (310)
+++.++... ..++ ...+++++ ..... ++... +.+.+.+..+.|. .+|
T Consensus 80 g~iiPdLp~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~V 159 (240)
T 1viz_A 80 LYFIPSVLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIF 159 (240)
T ss_dssp EEEEEEETTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred EEEEcccCcccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEE
Confidence 998665422 3344 45565555 44333 32222 2234444444332 344
Q ss_pred EEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHH
Q 021609 164 RTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 164 ~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l 242 (310)
.+-+ . +.....++++++++.. ++|++ .+|||+|++++.+++
T Consensus 160 Yl~s-~-----------------------------------G~~~~~~~i~~i~~~~~~~Pv~--vGgGI~t~e~a~~~~ 201 (240)
T 1viz_A 160 YLEY-S-----------------------------------GVLGDIEAVKKTKAVLETSTLF--YGGGIKDAETAKQYA 201 (240)
T ss_dssp EEEC-T-----------------------------------TSCCCHHHHHHHHHTCSSSEEE--EESSCCSHHHHHHHH
T ss_pred EEeC-C-----------------------------------CccChHHHHHHHHHhcCCCCEE--EEeccCCHHHHHHHH
Confidence 3322 1 1234577899999888 89998 689999999999988
Q ss_pred HcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 243 QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 243 ~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
+ |||+|+|||++++ +|....++ ++++++.
T Consensus 202 ~-gAd~VIVGSa~v~--~~~~~~~~-v~~~~~~ 230 (240)
T 1viz_A 202 E-HADVIVVGNAVYE--DFDRALKT-VAAVKGE 230 (240)
T ss_dssp T-TCSEEEECTHHHH--CHHHHHTH-HHHHHCC
T ss_pred h-CCCEEEEChHHHh--CHHHHHHH-HHHHHhc
Confidence 8 9999999999998 77645555 5556543
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=107.92 Aligned_cols=184 Identities=18% Similarity=0.187 Sum_probs=120.0
Q ss_pred HHHHHHHHcCCcEE-Eec-cC--CcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc-HHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAV-MAL-ER--VPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH-FVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~--~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~ 120 (310)
+..+.+ ++|++++ +++ +. .|. -.++ +..++.+|+.++.|+-+.+-+.+ ...++.+.++|||.+..
T Consensus 17 ~~i~~~-~~gad~lHvDvmDG~fvpn--~t~G-------~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itv 86 (231)
T 3ctl_A 17 EQIEFI-DSHADYFHIDIMDGHFVPN--LTLS-------PFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITL 86 (231)
T ss_dssp HHHHHH-HTTCSCEEEEEECSSSSSC--CCBC-------HHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEE
T ss_pred HHHHHH-HcCCCEEEEEEEeCccCcc--chhc-------HHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence 566677 9999997 332 11 121 1223 78999999988899888765532 33468899999999962
Q ss_pred C-CC--CCchhHHHHHHhcCCCCcEEEe--cCCHHHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecc
Q 021609 121 S-EV--LTPADEENHINKHNFRIPFVCG--CRNLGEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 121 ~-~~--~~~~~~~~~i~~~~~~i~~~v~--~~t~~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
. .. ..+....+.++++ ++.+++. ..|+.+..+....++|+|.+... ++++-
T Consensus 87 h~Ea~~~~~~~~i~~i~~~--G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfggQ-------------------- 144 (231)
T 3ctl_A 87 HPETINGQAFRLIDEIRRH--DMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQ-------------------- 144 (231)
T ss_dssp CGGGCTTTHHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCSSC--------------------
T ss_pred CcccCCccHHHHHHHHHHc--CCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcCCc--------------------
Confidence 2 12 2345566666554 4444444 44655555444458898864321 22220
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhc-----CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc-cccccCCC-HHHHHH
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG-SGVFKSGD-PVKRAQ 266 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~-----~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG-sai~~a~d-p~~~a~ 266 (310)
+-....++.++++++. .++++. +.||| +++++.++.++|||.+++| |+|++++| |...++
T Consensus 145 ----------~f~~~~l~kI~~lr~~~~~~~~~~~I~--VdGGI-~~~~~~~~~~aGAd~~V~G~saif~~~d~~~~~~~ 211 (231)
T 3ctl_A 145 ----------PFIPEMLDKLAELKAWREREGLEYEIE--VDGSC-NQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWR 211 (231)
T ss_dssp ----------CCCTTHHHHHHHHHHHHHHHTCCCEEE--EESCC-STTTHHHHHHHTCCEEEECTTTTGGGCSSHHHHHH
T ss_pred ----------cccHHHHHHHHHHHHHHhccCCCceEE--EECCc-CHHHHHHHHHcCCCEEEEccHHHhCCCCcHHHHHH
Confidence 0011223444444433 257777 57999 5999999999999999999 99999889 999999
Q ss_pred HHHHHHhc
Q 021609 267 AIVRAVTH 274 (310)
Q Consensus 267 ~l~~~i~~ 274 (310)
+|++.++.
T Consensus 212 ~l~~~~~~ 219 (231)
T 3ctl_A 212 IMTAQILA 219 (231)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99887764
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=9.1e-11 Score=103.62 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=111.9
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESEVL 124 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~~ 124 (310)
+.++++.++|++.+ ++ +... ....+.++++++.+ ++.+..+..+ ..++++.+.++|||+|+...
T Consensus 42 ~~~~al~~gGv~~i-el-------~~k~----~~~~~~i~~l~~~~~~~~igagtvl-~~d~~~~A~~aGAd~v~~p~-- 106 (225)
T 1mxs_A 42 PLADALAAGGIRTL-EV-------TLRS----QHGLKAIQVLREQRPELCVGAGTVL-DRSMFAAVEAAGAQFVVTPG-- 106 (225)
T ss_dssp HHHHHHHHTTCCEE-EE-------ESSS----THHHHHHHHHHHHCTTSEEEEECCC-SHHHHHHHHHHTCSSEECSS--
T ss_pred HHHHHHHHCCCCEE-EE-------ecCC----ccHHHHHHHHHHhCcccEEeeCeEe-eHHHHHHHHHCCCCEEEeCC--
Confidence 68999999999976 66 2111 11145677777766 4444444432 45889999999999997442
Q ss_pred CchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 125 TPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 125 ~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
...++.+..+. .++..+++++|+.|+.++.+.|+|||++++..
T Consensus 107 ~d~~v~~~~~~--~g~~~i~G~~t~~e~~~A~~~Gad~vk~FPa~----------------------------------- 149 (225)
T 1mxs_A 107 ITEDILEAGVD--SEIPLLPGISTPSEIMMGYALGYRRFKLFPAE----------------------------------- 149 (225)
T ss_dssp CCHHHHHHHHH--CSSCEECEECSHHHHHHHHTTTCCEEEETTHH-----------------------------------
T ss_pred CCHHHHHHHHH--hCCCEEEeeCCHHHHHHHHHCCCCEEEEccCc-----------------------------------
Confidence 23455555444 45666777999999999999999999996410
Q ss_pred ccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a 258 (310)
.....+.++.++... ++|++ +.||| +++++.++++ .|+++|. ||+|+++
T Consensus 150 -~~~G~~~lk~i~~~~~~ipvv--aiGGI-~~~N~~~~l~~~Ga~~v~-gSai~~~ 200 (225)
T 1mxs_A 150 -ISGGVAAIKAFGGPFGDIRFC--PTGGV-NPANVRNYMALPNVMCVG-TTWMLDS 200 (225)
T ss_dssp -HHTHHHHHHHHHTTTTTCEEE--EBSSC-CTTTHHHHHHSTTBCCEE-ECTTSCH
T ss_pred -cccCHHHHHHHHhhCCCCeEE--EECCC-CHHHHHHHHhccCCEEEE-EchhcCc
Confidence 000144567777655 79998 66999 6999999999 6999999 9999973
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.7e-11 Score=115.03 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=55.1
Q ss_pred cHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC---CH---HHHHHHHHHHHhccCChhhh
Q 021609 209 PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG---DP---VKRAQAIVRAVTHYSDPEVL 281 (310)
Q Consensus 209 ~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~---dp---~~~a~~l~~~i~~~~~~~~~ 281 (310)
..+.+.++++.. ++||+ ++|||++++|+.+++.+|||+|++|++++... .+ ....+.+.+.++..+...++
T Consensus 238 ~~~~l~~v~~~~~~ipvi--a~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~~~g~~~~~~~~~~~~~~l~~~m~~~G~ 315 (349)
T 1p0k_A 238 TAASLAEIRSEFPASTMI--ASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGA 315 (349)
T ss_dssp HHHHHHHHHHHCTTSEEE--EESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCeEE--EECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455666676654 79998 78999999999999999999999999999741 12 13344555555555544444
Q ss_pred hhhhhhcc
Q 021609 282 AEVSCGLG 289 (310)
Q Consensus 282 ~~~~~~~~ 289 (310)
.++++..+
T Consensus 316 ~~i~el~~ 323 (349)
T 1p0k_A 316 RTIADLQK 323 (349)
T ss_dssp CBHHHHTT
T ss_pred CCHHHHhh
Confidence 45554443
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=6.2e-11 Score=104.50 Aligned_cols=165 Identities=19% Similarity=0.294 Sum_probs=120.8
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHH---------HHHHHHcCCCEEE-eCCC--CCchhHHHHHHh-cCCCCcEEEecC
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVE---------AQILEAIGIDYVD-ESEV--LTPADEENHINK-HNFRIPFVCGCR 147 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~---------a~~~~~aGad~Vi-~~~~--~~~~~~~~~i~~-~~~~i~~~v~~~ 147 (310)
+..+..+++.+++|+..++. . ..+ +..+.+.|||.|+ ++.- ....++.+.++. ...++.++++++
T Consensus 45 ~~~L~~v~~~~~i~v~aQdv-~-~~~~Ga~TGeis~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg 122 (226)
T 1w0m_A 45 HLELGLVSQSVDIPVYAQGA-D-VEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAP 122 (226)
T ss_dssp GGGHHHHHTTCSSCBEESCC-S-BSSCSSCTTCCBHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHhcCCceEeeEC-C-hhhCCCccCCCCHHHHHHcCCCEEEEeeeeccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 67888888888999999983 2 233 7788999999997 4433 445566555544 567899999999
Q ss_pred CHHHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEE
Q 021609 148 NLGEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVV 225 (310)
Q Consensus 148 t~~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi 225 (310)
+.+|..++...++++|..+++ .+||..+ .+.++|++ .....+++.+. .+++++
T Consensus 123 e~~e~~~~~~~~~~iIayep~waiGtG~~v----------------~t~~~d~~-------~~~~~~ir~~~--~~~~il 177 (226)
T 1w0m_A 123 DPRTSLAAAALGPHAVAVEPPELIGTGRAV----------------SRYKPEAI-------VETVGLVSRHF--PEVSVI 177 (226)
T ss_dssp SHHHHHHHHHTCCSEEEECCGGGTTTSCCH----------------HHHCHHHH-------HHHHHHHHHHC--TTSEEE
T ss_pred CHHHHHHHhcCCCCEEEEcChhhhccCCCC----------------CCCChhHH-------HHHHHHHHhcc--CCCEEE
Confidence 999988888889999998874 4455110 11122211 11233444433 246777
Q ss_pred EeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 226 ~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
.+|||++.+++..+...|+||++||+++++++||....+++..++.+
T Consensus 178 --yggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~~~~~i~~l~~~~~~ 224 (226)
T 1w0m_A 178 --TGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSE 224 (226)
T ss_dssp --EESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred --EeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcCHHHHHHHHHHHHHh
Confidence 68999999999999899999999999999999999998888877653
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=7e-11 Score=104.13 Aligned_cols=162 Identities=21% Similarity=0.268 Sum_probs=117.8
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHH---------HHHHHHcCCCEEE-eCCC--CCchhHHHHHHh-cCCCCcEEEecC
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVE---------AQILEAIGIDYVD-ESEV--LTPADEENHINK-HNFRIPFVCGCR 147 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~---------a~~~~~aGad~Vi-~~~~--~~~~~~~~~i~~-~~~~i~~~v~~~ 147 (310)
+..+..+++.+++|+..++. . ..+ +..+.+.|||.|+ ++.- ....++.+.++. ...++.++++++
T Consensus 48 ~~~L~~v~~~~~i~v~aQdv-~-~~~~Ga~TGeis~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg 125 (225)
T 1hg3_A 48 LVDLRMIAESVEIPVFAQHI-D-PIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSN 125 (225)
T ss_dssp HHHHHHHHHSCSSCBEESCC-C-SCCSBSCTTCCCHHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHHHHhcCCceeeeeC-C-cccCCCccCcccHHHHHHcCCCEEEECcchhcCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 78899999888999999973 2 223 7889999999997 4432 445556555544 457899999999
Q ss_pred CHHHHHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEE
Q 021609 148 NLGEALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVV 225 (310)
Q Consensus 148 t~~ea~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi 225 (310)
+.+|..++...++++|..+++ .+||.. +.+.++|++ .....+++.+. .+++++
T Consensus 126 e~~e~~~~~~~~~~iIayep~waiGtG~~----------------v~t~~~d~~-------~~~~~~ir~~~--~~~~il 180 (225)
T 1hg3_A 126 NPAVSAAVAALNPDYVAVEPPELIGTGIP----------------VSKAKPEVI-------TNTVELVKKVN--PEVKVL 180 (225)
T ss_dssp SHHHHHHHHTTCCSEEEECCTTTTTTSCC----------------TTTSCTHHH-------HHHHHHHHHHC--TTSEEE
T ss_pred CHHHHHHHhcCCCCEEEEeChhhhccCCC----------------CCCCChhHH-------HHHHHHHHhcc--CCCEEE
Confidence 999988888889999999875 344410 012233221 11133444433 246777
Q ss_pred EeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 226 ~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
.+|||++.+++..+...|+||++||+++++++||....+++..+
T Consensus 181 --yggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~~~~~i~~l~~~ 224 (225)
T 1hg3_A 181 --CGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSG 224 (225)
T ss_dssp --EESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHHT
T ss_pred --EeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcCHHHHHHHHHhh
Confidence 68999999999999999999999999999999998887777653
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.5e-12 Score=115.33 Aligned_cols=78 Identities=17% Similarity=0.090 Sum_probs=66.5
Q ss_pred HHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhc
Q 021609 210 YDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGL 288 (310)
Q Consensus 210 ~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~ 288 (310)
++.++++++.. ++||+ ++|||+|++|+.+++.+|||+|++||+++. .+|+ ..+++.+.++.++...++.++++..
T Consensus 232 ~~~i~~v~~~~~~ipvi--~~GGI~~~~da~~~l~~GAd~V~ig~~~l~-~~p~-~~~~i~~~l~~~~~~~g~~~i~~~~ 307 (314)
T 2e6f_A 232 LANVNAFYRRCPDKLVF--GCGGVYSGEDAFLHILAGASMVQVGTALQE-EGPG-IFTRLEDELLEIMARKGYRTLEEFR 307 (314)
T ss_dssp HHHHHHHHHHCTTSEEE--EESSCCSHHHHHHHHHHTCSSEEECHHHHH-HCTT-HHHHHHHHHHHHHHHHTCCSSTTTT
T ss_pred HHHHHHHHHhcCCCCEE--EECCCCCHHHHHHHHHcCCCEEEEchhhHh-cCcH-HHHHHHHHHHHHHHHcCCCCHHHHh
Confidence 56778887777 89998 789999999999999999999999999995 3664 5566888888898888888998888
Q ss_pred ccc
Q 021609 289 GEA 291 (310)
Q Consensus 289 ~~~ 291 (310)
|..
T Consensus 308 g~~ 310 (314)
T 2e6f_A 308 GRV 310 (314)
T ss_dssp TCC
T ss_pred chH
Confidence 754
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=1e-10 Score=103.35 Aligned_cols=185 Identities=15% Similarity=0.122 Sum_probs=117.7
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcH-HHHHHHHHcCCCEEE-
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHF-VEAQILEAIGIDYVD- 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~-~~a~~~~~aGad~Vi- 119 (310)
+..+.++++|++++ +++ ....-.-.+| +..++.+|+.+ +.|+.+...+.+- ..++.+.+ ||.+.
T Consensus 22 ~~i~~~~~~g~d~i-HvDvmDg~fvpn~t~G-------~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~--Ad~itv 91 (227)
T 1tqx_A 22 EETQRMESLGAEWI-HLDVMDMHFVPNLSFG-------PPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT--SNQLTF 91 (227)
T ss_dssp HHHHHHHHTTCSEE-EEEEEBSSSSSCBCCC-------HHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT--SSEEEE
T ss_pred HHHHHHHHcCCCEE-EEEEEeCCcCcchhcC-------HHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh--CCEEEE
Confidence 67778889999997 443 1100011233 78999999988 8898887655421 11222333 89884
Q ss_pred --eCCCCCchhHHH---HHHhcCCCCcEEEec--CCHHHHHH-HHHhC-CCEEEEcC--CCCCcchHHHHHHHHhhccce
Q 021609 120 --ESEVLTPADEEN---HINKHNFRIPFVCGC--RNLGEALR-RIREG-AAMIRTKG--EAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 120 --~~~~~~~~~~~~---~i~~~~~~i~~~v~~--~t~~ea~~-~~~~G-ad~V~v~g--~~~~~~~~~~~~~~r~~~~~~ 188 (310)
.+....+....+ .+++ .++.++++. +|..+..+ ..+.| +|+|.+.+ +++++-
T Consensus 92 H~ea~~~~~~~~i~~~~~i~~--~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq--------------- 154 (227)
T 1tqx_A 92 HFEALNEDTERCIQLAKEIRD--NNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQ--------------- 154 (227)
T ss_dssp EGGGGTTCHHHHHHHHHHHHT--TTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSC---------------
T ss_pred eecCCccCHHHHHHHHHHHHH--cCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCc---------------
Confidence 222213555556 5544 555666654 45544444 44554 99985443 122221
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQA 267 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~ 267 (310)
+-....++.++++++.. ++++. +.||| +++++.++.++|||.+++||+|++++||...+++
T Consensus 155 ---------------~f~~~~l~ki~~lr~~~~~~~I~--VdGGI-~~~ti~~~~~aGAd~~V~GsaIf~~~d~~~~i~~ 216 (227)
T 1tqx_A 155 ---------------SFMHDMMGKVSFLRKKYKNLNIQ--VDGGL-NIETTEISASHGANIIVAGTSIFNAEDPKYVIDT 216 (227)
T ss_dssp ---------------CCCGGGHHHHHHHHHHCTTCEEE--EESSC-CHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHH
T ss_pred ---------------ccchHHHHHHHHHHHhccCCeEE--EECCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHH
Confidence 00122355566666543 67777 46999 6999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 021609 268 IVRAVTHY 275 (310)
Q Consensus 268 l~~~i~~~ 275 (310)
|++.++.+
T Consensus 217 l~~~~~~~ 224 (227)
T 1tqx_A 217 MRVSVQKY 224 (227)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 98877644
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=110.36 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=66.9
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCG 287 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~ 287 (310)
++.++++++.. ++||+ +.|||.|++|+.+++.+|||+|++||+++. .+|+ ..+++.+.+..++...++.++++.
T Consensus 285 ~~~v~~i~~~v~~~ipvI--~~GGI~s~~da~~~l~~GAd~V~vgra~l~-~gP~-~~~~i~~~l~~~m~~~G~~~i~e~ 360 (367)
T 3zwt_A 285 TQTIREMYALTQGRVPII--GVGGVSSGQDALEKIRAGASLVQLYTALTF-WGPP-VVGKVKRELEALLKEQGFGGVTDA 360 (367)
T ss_dssp HHHHHHHHHHTTTCSCEE--EESSCCSHHHHHHHHHHTCSEEEESHHHHH-HCTH-HHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHcCCCceEE--EECCCCCHHHHHHHHHcCCCEEEECHHHHh-cCcH-HHHHHHHHHHHHHHHcCCCCHHHh
Confidence 56788888776 89998 789999999999999999999999999953 2675 556688899999988899999999
Q ss_pred cccc
Q 021609 288 LGEA 291 (310)
Q Consensus 288 ~~~~ 291 (310)
.|.+
T Consensus 361 ~G~~ 364 (367)
T 3zwt_A 361 IGAD 364 (367)
T ss_dssp TTGG
T ss_pred hCcc
Confidence 8865
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-11 Score=113.66 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=67.0
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc-cccCCCHHHHHHHHHHHHhccCChhhhhhhhh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG-VFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSC 286 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa-i~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~ 286 (310)
++.++++++.. ++||+ +.|||.|++|+.+++.+|||+|++||+ ++. +|+ ..+++.+.++.+++..++.++++
T Consensus 262 ~~~v~~i~~~~~~~ipII--g~GGI~s~~da~~~l~aGAd~V~igra~~~~--gP~-~~~~i~~~L~~~l~~~G~~si~e 336 (345)
T 3oix_A 262 LANVHAFYKRLNPSIQII--GTGGVXTGRDAFEHILCGASMVQIGTALHQE--GPQ-IFKRITKELXAIMTEKGYETLED 336 (345)
T ss_dssp HHHHHHHHTTSCTTSEEE--EESSCCSHHHHHHHHHHTCSEEEESHHHHHH--CTH-HHHHHHHHHHHHHHHHTCCSGGG
T ss_pred HHHHHHHHHHcCCCCcEE--EECCCCChHHHHHHHHhCCCEEEEChHHHhc--ChH-HHHHHHHHHHHHHHHcCCCCHHH
Confidence 57788888876 79998 789999999999999999999999999 565 775 55669999999999899999999
Q ss_pred hcccc
Q 021609 287 GLGEA 291 (310)
Q Consensus 287 ~~~~~ 291 (310)
..|..
T Consensus 337 ~~G~~ 341 (345)
T 3oix_A 337 FRGKL 341 (345)
T ss_dssp TTTCC
T ss_pred HHhHH
Confidence 98863
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=114.98 Aligned_cols=78 Identities=15% Similarity=0.118 Sum_probs=66.8
Q ss_pred HHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhc
Q 021609 210 YDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGL 288 (310)
Q Consensus 210 ~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~ 288 (310)
++.+.++++.. ++||+ +.|||.|++|+.+++.+|||+|++||+++.. .|+ ..+++.+.++.++...++.++++..
T Consensus 265 ~~~i~~v~~~~~~ipII--~~GGI~s~~da~~~l~aGAd~V~vgra~l~~-GP~-~~~~i~~~l~~~m~~~G~~si~el~ 340 (354)
T 4ef8_A 265 LANINAFYRRCPGKLIF--GCGGVYTGEDAFLHVLAGASMVQVGTALQEE-GPS-IFERLTSELLGVMAKKRYQTLDEFR 340 (354)
T ss_dssp HHHHHHHHHHCTTSEEE--EESCCCSHHHHHHHHHHTEEEEEECHHHHHH-CTT-HHHHHHHHHHHHHHHHTCCSGGGTT
T ss_pred HHHHHHHHHhCCCCCEE--EECCcCCHHHHHHHHHcCCCEEEEhHHHHHh-CHH-HHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 67788887764 79998 7899999999999999999999999999972 164 5567899999999989999999998
Q ss_pred ccc
Q 021609 289 GEA 291 (310)
Q Consensus 289 ~~~ 291 (310)
|..
T Consensus 341 G~~ 343 (354)
T 4ef8_A 341 GKV 343 (354)
T ss_dssp TCC
T ss_pred HHH
Confidence 863
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=99.22 E-value=6.4e-11 Score=111.30 Aligned_cols=152 Identities=20% Similarity=0.261 Sum_probs=100.1
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHH----HHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIK----EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~----~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.++|+|+| +|| |.++..+...|++++..++.+. .+++.+++||.+|.++++.+.
T Consensus 74 ~aA~~a~~~G~D~I-eIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~~------------ 140 (350)
T 3b0p_A 74 EAARIGEAFGYDEI-NLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEGK------------ 140 (350)
T ss_dssp HHHHHHHHTTCSEE-EEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTTC------------
T ss_pred HHHHHHHHcCCCEE-EECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCcc------------
Confidence 46777788999987 787 4433333334555666665544 456667999999988764210
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhH
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~ 198 (310)
.+..+ ..+.+.++.+.|+|+|.++++....... .+..
T Consensus 141 -----~~~~~-------------------~~~~a~~l~~aG~d~I~V~~r~~~~g~~-------------------g~~~ 177 (350)
T 3b0p_A 141 -----ETYRG-------------------LAQSVEAMAEAGVKVFVVHARSALLALS-------------------TKAN 177 (350)
T ss_dssp -----CCHHH-------------------HHHHHHHHHHTTCCEEEEECSCBC---------------------------
T ss_pred -----ccHHH-------------------HHHHHHHHHHcCCCEEEEecCchhcccC-------------------cccc
Confidence 00001 1133566778899999998764210000 0000
Q ss_pred HHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 199 VFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 199 ~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
.......+++++++++.. ++||+ ++|||.|++|+.++++ |||+|++||+++. ||+
T Consensus 178 ----~~~~~~~~~~i~~ik~~~~~iPVi--anGgI~s~eda~~~l~-GaD~V~iGRa~l~--~P~ 233 (350)
T 3b0p_A 178 ----REIPPLRHDWVHRLKGDFPQLTFV--TNGGIRSLEEALFHLK-RVDGVMLGRAVYE--DPF 233 (350)
T ss_dssp ------CCCCCHHHHHHHHHHCTTSEEE--EESSCCSHHHHHHHHT-TSSEEEECHHHHH--CGG
T ss_pred ----cCCCcccHHHHHHHHHhCCCCeEE--EECCcCCHHHHHHHHh-CCCEEEECHHHHh--CcH
Confidence 000123578888898877 89998 7899999999999998 9999999999997 665
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-11 Score=107.28 Aligned_cols=181 Identities=15% Similarity=0.079 Sum_probs=113.6
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHcCCCEEEe
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~aGad~Vi~ 120 (310)
+.++.+.++|++++ +++ ......-.++ +..++.+++.+ ++.+++.+ ....++.+.++|||.+..
T Consensus 30 ~~i~~~~~~gad~l-hvDvmDG~fvpn~t~G-------~~~v~~lr~~~~~DvhLMv~~---p~~~i~~~~~aGAd~itv 98 (237)
T 3cu2_A 30 EEVTTLLENQINVL-HFDIADGQFSSLFTVG-------AIGIKYFPTHCFKDVHLMVRN---QLEVAKAVVANGANLVTL 98 (237)
T ss_dssp HHHHHHHHTTCCEE-EEEEEBSSSSSCBCBC-------THHHHTSCTTSEEEEEEECSC---HHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEE-EEEEecCccccchhhh-------HHHHHHHhhhCCCCeEEEEEC---HHHHHHHHHHcCCCEEEE
Confidence 66888899999997 443 1100011122 57888888776 44444332 245678999999999852
Q ss_pred CC--CCCchhHHHHHHhcCC-------CCcEEEec--CCHHHHHHHHHhCCCEEEE---cCCCCCcchHHHHHHHHhhcc
Q 021609 121 SE--VLTPADEENHINKHNF-------RIPFVCGC--RNLGEALRRIREGAAMIRT---KGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 121 ~~--~~~~~~~~~~i~~~~~-------~i~~~v~~--~t~~ea~~~~~~Gad~V~v---~g~~~~~~~~~~~~~~r~~~~ 186 (310)
+. ...+....+.+++.+. +..+++++ +|+.+.......++|+|.+ ++..++...
T Consensus 99 H~ea~~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l~~~D~vlvMsv~pgfggq~f------------ 166 (237)
T 3cu2_A 99 QLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYLDQIDVIQLLTLDPRNGTKYP------------ 166 (237)
T ss_dssp ETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTTTTCSEEEEESEETTTTEECC------------
T ss_pred ecCCcccHHHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHhhcCceeeeeeeccCcCCeec------------
Confidence 22 1234455555543311 55666665 5766666555568999865 432211110
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-----CCCEEEeCCCCCCCHHHHHHHHH--cCCCEEEEccccccCC
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQ--LGCDGVFVGSGVFKSG 259 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-----~iPVi~iA~GGI~t~~d~~~~l~--~GadgV~VGsai~~a~ 259 (310)
.....+.++++++.. ++|+. +.||| +.+++.++.+ +|||++++||+|+++
T Consensus 167 -------------------~~~~l~ki~~lr~~~~~~~~~~~I~--vdGGI-~~~~~~~~~~~~aGad~~VvGSaIf~~- 223 (237)
T 3cu2_A 167 -------------------SELILDRVIQVEKRLGNRRVEKLIN--IDGSM-TLELAKYFKQGTHQIDWLVSGSALFSG- 223 (237)
T ss_dssp -------------------HHHHHHHHHHHHHHHGGGGGGCEEE--EESSC-CHHHHHHHHHSSSCCCCEEECGGGGSS-
T ss_pred -------------------ChhHHHHHHHHHHHHHhcCCCceEE--EECCc-CHHHHHHHHHhCCCCcEEEEeeHHhCC-
Confidence 011133344444332 57887 46999 6999999999 999999999999998
Q ss_pred CHHHHHHHHHHHH
Q 021609 260 DPVKRAQAIVRAV 272 (310)
Q Consensus 260 dp~~~a~~l~~~i 272 (310)
||...+++|++.+
T Consensus 224 d~~~~~~~l~~~~ 236 (237)
T 3cu2_A 224 ELKTNLKVWKSSI 236 (237)
T ss_dssp CHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhh
Confidence 9998888886643
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.9e-11 Score=112.51 Aligned_cols=79 Identities=25% Similarity=0.377 Sum_probs=66.6
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcc
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLG 289 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~ 289 (310)
+++++++++..++||+ ++|||++++|+.+++++|||+|++||+++. +|. ..+++.+.++.++...++.++++..|
T Consensus 230 ~~~i~~i~~~~~ipvi--a~GGI~~~~d~~~~l~~GAd~V~vg~~~l~--~p~-~~~~i~~~l~~~~~~~g~~~~~~~~g 304 (311)
T 1ep3_A 230 LKLIHQVAQDVDIPII--GMGGVANAQDVLEMYMAGASAVAVGTANFA--DPF-VCPKIIDKLPELMDQYRIESLESLIQ 304 (311)
T ss_dssp HHHHHHHHTTCSSCEE--ECSSCCSHHHHHHHHHHTCSEEEECTHHHH--CTT-HHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHhcCCCEE--EECCcCCHHHHHHHHHcCCCEEEECHHHHc--CcH-HHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 4678888887899998 789999999999999999999999999998 554 44568888888888788888888887
Q ss_pred cchh
Q 021609 290 EAMV 293 (310)
Q Consensus 290 ~~~~ 293 (310)
.+.+
T Consensus 305 ~~~~ 308 (311)
T 1ep3_A 305 EVKE 308 (311)
T ss_dssp HHHH
T ss_pred hhcc
Confidence 6544
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-11 Score=107.45 Aligned_cols=159 Identities=13% Similarity=0.176 Sum_probs=105.7
Q ss_pred HHHHHHHHhh-cCcceeecccc--CcHHHHHHHHHcCCCEEEeCCCCC---chhHHHHHHhcCCCCcE-EEecCCHHHHH
Q 021609 81 PQLIKEIKQS-VTIPVMAKARI--GHFVEAQILEAIGIDYVDESEVLT---PADEENHINKHNFRIPF-VCGCRNLGEAL 153 (310)
Q Consensus 81 ~~~i~~i~~~-~~iPv~vk~~~--~~~~~a~~~~~aGad~Vi~~~~~~---~~~~~~~i~~~~~~i~~-~v~~~t~~ea~ 153 (310)
++.++++|+. .+.|+.+...+ .....++.+.++|+|+++.+.... ..++.+.+++++....+ +..+.|.+++.
T Consensus 47 ~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~~~~~ 126 (218)
T 3jr2_A 47 MKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAHIATIAACKKVADELNGEIQIEIYGNWTMQDAK 126 (218)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECCSSCCHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCccceeeeecCCHHHHH
Confidence 6789999887 46677653222 223467889999999996544322 23445555554332222 34456788888
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc---HHHHHHHhhcCCCCEEEeCCC
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP---YDLVMQTKQLGRLPVVHFAAG 230 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~---~~~i~~i~~~~~iPVi~iA~G 230 (310)
.+.+.|+|++.++- +.++. + .+.... ++.+++++. .++|++ +.|
T Consensus 127 ~~~~~g~d~v~~~~-~~~~~----------------------------~-~g~~~~~~~l~~i~~~~~-~~~pi~--v~G 173 (218)
T 3jr2_A 127 AWVDLGITQAIYHR-SRDAE----------------------------L-AGIGWTTDDLDKMRQLSA-LGIELS--ITG 173 (218)
T ss_dssp HHHHTTCCEEEEEC-CHHHH----------------------------H-HTCCSCHHHHHHHHHHHH-TTCEEE--EES
T ss_pred HHHHcCccceeeee-ccccc----------------------------c-CCCcCCHHHHHHHHHHhC-CCCCEE--EEC
Confidence 88888999987642 11000 0 011111 233444433 478998 569
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
|| +++++.+++++|||+++|||+|++++||...+ +|++.+++
T Consensus 174 GI-~~~~~~~~~~aGAd~vvvGsaI~~a~dp~~a~-~l~~~~~~ 215 (218)
T 3jr2_A 174 GI-VPEDIYLFEGIKTKTFIAGRALAGAEGQQTAA-ALREQIDR 215 (218)
T ss_dssp SC-CGGGGGGGTTSCEEEEEESGGGSHHHHHHHHH-HHHHHHHH
T ss_pred CC-CHHHHHHHHHcCCCEEEEchhhcCCCCHHHHH-HHHHHHHh
Confidence 99 69999999999999999999999999999888 88887764
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=97.81 Aligned_cols=208 Identities=17% Similarity=0.206 Sum_probs=130.7
Q ss_pred CHHHHHHHHHcCCcEEEeccCCcccccccC-CCC--CC---CCHHHHHHH----Hhhc-Ccceeecccc----C-cHHHH
Q 021609 44 TPEQARVAEEAGACAVMALERVPADIRSQG-GVA--RM---SDPQLIKEI----KQSV-TIPVMAKARI----G-HFVEA 107 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~-G~~--~~---~~~~~i~~i----~~~~-~iPv~vk~~~----~-~~~~a 107 (310)
+-=.|+..+++|+|.|+.+|.-. .|..| ||- ++ ...+.+.++ --.+ ++||++..-- . .....
T Consensus 37 tGlsAk~~e~gGaDlii~ynsGr--fR~~G~~slag~lpygnaN~iv~e~~~evlp~v~~iPV~Agv~~~DP~~~~g~~L 114 (286)
T 2p10_A 37 TGLSAKSEEAGDIDLIVIYNSGR--YRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFL 114 (286)
T ss_dssp SHHHHHHHHHTTCSEEEECHHHH--HHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSSCEEEEECTTCTTCCHHHHH
T ss_pred cchhhHHHHhCCCCEEEEeccch--hhhcCccchhhhccccCHHHHHHHHHHhhhccCCCCCEEEEECCcCCCcCHHHHH
Confidence 44578889999999988887110 01111 110 11 112333333 2223 8999987211 1 23445
Q ss_pred HHHHHcCCCEEEeCC----------------CCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCC-C
Q 021609 108 QILEAIGIDYVDESE----------------VLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE-A 169 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~----------------~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~-~ 169 (310)
+.+.++|+.+|+... .+...+..+++++ +..++..++.+.|.+++....++|+|+|.+|.. +
T Consensus 115 e~lk~~Gf~Gv~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~v~~~eeA~amA~agpDiI~~h~glT 194 (286)
T 2p10_A 115 RELKEIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYVFSPEDAVAMAKAGADILVCHMGLT 194 (286)
T ss_dssp HHHHHHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEECSHHHHHHHHHHTCSEEEEECSCC
T ss_pred HHHHHhCCceEEECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCC
Confidence 889999999996322 2455666777766 668899999999999999999999999999964 2
Q ss_pred CCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHc--CC
Q 021609 170 GTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQL--GC 246 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~--Ga 246 (310)
..+.+-. . ...+.++- .....++.+.+++. .++.|++ .+|||.+++|+..+++. |+
T Consensus 195 ~gglIG~-~-------------~avs~~~~------~e~i~~i~~a~~~vnpdvivLc-~gGpIstpeDv~~~l~~t~G~ 253 (286)
T 2p10_A 195 TGGAIGA-R-------------SGKSMDDC------VSLINECIEAARTIRDDIIILS-HGGPIANPEDARFILDSCQGC 253 (286)
T ss_dssp -----------------------CCCHHHH------HHHHHHHHHHHHHHCSCCEEEE-ESTTCCSHHHHHHHHHHCTTC
T ss_pred CCCcccC-C-------------CcccHHHh------HHHHHHHHHHHHHhCCCcEEEe-cCCCCCCHHHHHHHHhcCCCc
Confidence 1111100 0 00011100 00012223333332 3566664 46699999999999998 99
Q ss_pred CEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 247 DGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 247 dgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
+|+..+|++.+.+ |....+++.+.++..
T Consensus 254 ~G~~gASsier~p-~e~ai~~~~~~fk~~ 281 (286)
T 2p10_A 254 HGFYGASSMERLP-AEEAIRSQTLAFKAI 281 (286)
T ss_dssp CEEEESHHHHHHH-HHHHHHHHHHHHHTC
T ss_pred cEEEeehhhhcCC-HHHHHHHHHHHHHhc
Confidence 9999999999987 888878888887754
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.1e-11 Score=104.66 Aligned_cols=170 Identities=18% Similarity=0.217 Sum_probs=107.4
Q ss_pred cccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-CcHHHHHHHHHcCC
Q 021609 37 GVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-GHFVEAQILEAIGI 115 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-~~~~~a~~~~~aGa 115 (310)
|+-..-.+.+.++.++++|+|.| .+. -..|.+....++.++++|+ +++|+++.... +.. ++|+
T Consensus 15 gDP~~~~t~~~~~~l~~~GaD~I-elG-------~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i-------~~gv 78 (234)
T 2f6u_A 15 LDPDRTNTDEIIKAVADSGTDAV-MIS-------GTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV-------VYDV 78 (234)
T ss_dssp ECTTSCCCHHHHHHHHTTTCSEE-EEC-------CCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC-------CCCS
T ss_pred eCCCccccHHHHHHHHHcCCCEE-EEC-------CCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh-------hcCC
Confidence 44334456688999999999987 541 1233433334678888888 89999986655 322 7899
Q ss_pred CEEEeCCCC--CchhHH-----HHH-------HhcC-----CCCcE----EEecC-------------CHHHHHHHHHhC
Q 021609 116 DYVDESEVL--TPADEE-----NHI-------NKHN-----FRIPF----VCGCR-------------NLGEALRRIREG 159 (310)
Q Consensus 116 d~Vi~~~~~--~~~~~~-----~~i-------~~~~-----~~i~~----~v~~~-------------t~~ea~~~~~~G 159 (310)
|+++.++.. +..++. +.+ ++++ ..++. ++... +.+.+.+..+.|
T Consensus 79 Dg~iipdLp~ee~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~~g~~~~~~e~~~~~a~~g 158 (234)
T 2f6u_A 79 DYLFVPTVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVG 158 (234)
T ss_dssp SEEEEEEETTBSBGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHH
T ss_pred CEEEEcccCCCCCHHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEeecCCCCCCHHHHHHHHHhh
Confidence 999866532 223333 333 3333 33222 22221 222233333333
Q ss_pred C-----CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCC
Q 021609 160 A-----AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVA 233 (310)
Q Consensus 160 a-----d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~ 233 (310)
. .+|.+.+ . +.....++++++++.. ++|++ .+|||+
T Consensus 159 ~~~l~~~~Vyl~~-~-----------------------------------G~~~~~~~i~~i~~~~~~~Pv~--vGgGI~ 200 (234)
T 2f6u_A 159 EKLFNLPIIYIEY-S-----------------------------------GTYGNPELVAEVKKVLDKARLF--YGGGID 200 (234)
T ss_dssp HHTTCCSEEEEEC-T-----------------------------------TSCCCHHHHHHHHHHCSSSEEE--EESCCC
T ss_pred hhhcCCCEEEEeC-C-----------------------------------CCcchHHHHHHHHHhCCCCCEE--EEecCC
Confidence 3 3333322 1 1234577889998888 89998 689999
Q ss_pred CHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 234 TPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 234 t~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
+++++.++++ |||+|+|||++++ +|..
T Consensus 201 s~e~a~~~~~-gAd~VIVGSa~v~--~~~~ 227 (234)
T 2f6u_A 201 SREKAREMLR-YADTIIVGNVIYE--KGID 227 (234)
T ss_dssp SHHHHHHHHH-HSSEEEECHHHHH--HCHH
T ss_pred CHHHHHHHHh-CCCEEEEChHHHh--CHHH
Confidence 9999999989 9999999999997 5543
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=8.2e-10 Score=105.60 Aligned_cols=129 Identities=16% Similarity=0.194 Sum_probs=86.6
Q ss_pred HHHHHHHHHcCCCEEEe-CCCCCch---hHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVDE-SEVLTPA---DEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~-~~~~~~~---~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.|.. ...-.+. ++.+.+++...++++++ .+.+.++++++.+.|+|+|.+.+..++ +...
T Consensus 155 ~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg~~~G~--~~~~- 231 (404)
T 1eep_A 155 IERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGS--ICTT- 231 (404)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCST--TSHH-
T ss_pred HHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEECCCCCc--CcCc-
Confidence 46677888999999953 2112233 33344444323677775 689999999999999999998322221 1100
Q ss_pred HHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
+. . .+. .+.++.+..+.+ ..++||+ ++|||++++|+.+++.+|||+|++|++
T Consensus 232 ---~~-------~------------~~~g~p~~~~l~~v~~~~~~~~ipVi--a~GGI~~~~d~~~ala~GAd~V~iG~~ 287 (404)
T 1eep_A 232 ---RI-------V------------AGVGVPQITAICDVYEACNNTNICII--ADGGIRFSGDVVKAIAAGADSVMIGNL 287 (404)
T ss_dssp ---HH-------H------------HCCCCCHHHHHHHHHHHHTTSSCEEE--EESCCCSHHHHHHHHHHTCSEEEECHH
T ss_pred ---cc-------c------------CCCCcchHHHHHHHHHHHhhcCceEE--EECCCCCHHHHHHHHHcCCCHHhhCHH
Confidence 00 0 011 223444555543 4589998 789999999999999999999999999
Q ss_pred cccCC
Q 021609 255 VFKSG 259 (310)
Q Consensus 255 i~~a~ 259 (310)
++.++
T Consensus 288 ~l~~~ 292 (404)
T 1eep_A 288 FAGTK 292 (404)
T ss_dssp HHTBT
T ss_pred HhcCC
Confidence 97653
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=7.7e-11 Score=109.28 Aligned_cols=140 Identities=23% Similarity=0.312 Sum_probs=95.2
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHH----HHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQL----IKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~----i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.++ +|+| +|| |.++..+...|++++..++. ++.+++.+++||.+|.+.++..
T Consensus 75 ~aa~~a~~~-~d~I-ein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~~------------- 139 (318)
T 1vhn_A 75 EAARILSEK-YKWI-DLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEK------------- 139 (318)
T ss_dssp HHHHHHTTT-CSEE-EEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSS-------------
T ss_pred HHHHHHHHh-CCEE-EEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCCh-------------
Confidence 357777778 9987 777 44433333345556666654 4455677889999998875310
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhH
Q 021609 119 DESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~ 198 (310)
. .+.+.+.++.+.|+|+|.++++...+.
T Consensus 140 --------~-------------------~~~~~a~~l~~~G~d~i~v~g~~~~~~------------------------- 167 (318)
T 1vhn_A 140 --------N-------------------EVEEIYRILVEEGVDEVFIHTRTVVQS------------------------- 167 (318)
T ss_dssp --------C-------------------CHHHHHHHHHHTTCCEEEEESSCTTTT-------------------------
T ss_pred --------H-------------------HHHHHHHHHHHhCCCEEEEcCCCcccc-------------------------
Confidence 0 011346667788999998887542110
Q ss_pred HHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHH
Q 021609 199 VFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 199 ~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~ 263 (310)
....+.++.++++++ ++||+ ++|||.|++|+.++++ .|||+|++|++++. ||+.
T Consensus 168 -----~~~~~~~~~i~~i~~--~ipVi--~~GgI~s~~da~~~l~~~gad~V~iGR~~l~--~P~l 222 (318)
T 1vhn_A 168 -----FTGRAEWKALSVLEK--RIPTF--VSGDIFTPEDAKRALEESGCDGLLVARGAIG--RPWI 222 (318)
T ss_dssp -----TSSCCCGGGGGGSCC--SSCEE--EESSCCSHHHHHHHHHHHCCSEEEESGGGTT--CTTH
T ss_pred -----CCCCcCHHHHHHHHc--CCeEE--EECCcCCHHHHHHHHHcCCCCEEEECHHHHh--Ccch
Confidence 011234566666666 89998 7899999999999997 79999999999997 6653
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-10 Score=108.19 Aligned_cols=163 Identities=24% Similarity=0.323 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec--cccCc-HHHHHHHHHcCCCEE--E
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK--ARIGH-FVEAQILEAIGIDYV--D 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk--~~~~~-~~~a~~~~~aGad~V--i 119 (310)
+.+++++++|++++ +.++ +|. .+ ...+.++..+.+|+.+. ..... ... .....|++.. +
T Consensus 140 ~~~~~a~~~G~~ai~it~d-~p~----~g--------~r~~d~r~~~~~p~~~~~~~~~~~~~~~--~~~~~g~~~~~~v 204 (370)
T 1gox_A 140 QLVRRAERAGFKAIALTVD-TPR----LG--------RREADIKNRFVLPPFLTLKNFEGIDLGK--MDKANDSGLSSYV 204 (370)
T ss_dssp HHHHHHHHTTCCEEEEECS-CSS----CC--------CCHHHHHTTCCCCTTCCCGGGSSSCCC-----------HHHHH
T ss_pred HHHHHHHHCCCCEEEEeCC-CCc----cc--------ccHHHHHhccCCCcccchhhhhhhhhhc--cccccCccHHHHH
Confidence 57888899999987 2332 111 11 12344466666665441 11110 000 0112344431 1
Q ss_pred e---CCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccC
Q 021609 120 E---SEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 120 ~---~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
. ...+.... .+.+++. .++++++ .+.+.+++.++.++|+|+|.++++++.. + +
T Consensus 205 ~~~~~~~~~~~~-i~~l~~~-~~~pv~vK~~~~~e~a~~a~~~Gad~I~vs~~ggr~------------------~---~ 261 (370)
T 1gox_A 205 AGQIDRSLSWKD-VAWLQTI-TSLPILVKGVITAEDARLAVQHGAAGIIVSNHGARQ------------------L---D 261 (370)
T ss_dssp HHTBCTTCCHHH-HHHHHHH-CCSCEEEECCCSHHHHHHHHHTTCSEEEECCGGGTS------------------S---T
T ss_pred HhhcCccchHHH-HHHHHHH-hCCCEEEEecCCHHHHHHHHHcCCCEEEECCCCCcc------------------C---C
Confidence 1 11222233 4444432 4677777 6889999999999999999996543210 0 0
Q ss_pred hhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
...+.++.+.++++.. ++||+ ++|||++++|+.+++.+|||+|++|++++.
T Consensus 262 ---------~~~~~~~~l~~v~~~~~~~ipvi--a~GGI~~~~D~~k~l~~GAdaV~iGr~~l~ 314 (370)
T 1gox_A 262 ---------YVPATIMALEEVVKAAQGRIPVF--LDGGVRRGTDVFKALALGAAGVFIGRPVVF 314 (370)
T ss_dssp ---------TCCCHHHHHHHHHHHTTTSSCEE--EESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred ---------CcccHHHHHHHHHHHhCCCCEEE--EECCCCCHHHHHHHHHcCCCEEeecHHHHH
Confidence 1234567777777655 79998 789999999999999999999999999985
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=9.9e-11 Score=111.66 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=66.7
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCG 287 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~ 287 (310)
++.++++++.+ ++||| +.|||.|++|+.+++.+|||+|++||+++.. .|+ ..+++.+.++.+++..++.++++.
T Consensus 332 l~~I~~v~~~v~~~iPII--g~GGI~s~eDa~e~l~aGAd~VqIgra~l~~-GP~-~~~~i~~~L~~~l~~~G~~si~e~ 407 (415)
T 3i65_A 332 TKFICEMYNYTNKQIPII--ASGGIFSGLDALEKIEAGASVCQLYSCLVFN-GMK-SAVQIKRELNHLLYQRGYYNLKEA 407 (415)
T ss_dssp HHHHHHHHHHTTTCSCEE--ECSSCCSHHHHHHHHHHTEEEEEESHHHHHH-GGG-HHHHHHHHHHHHHHHTTCSSSTTT
T ss_pred HHHHHHHHHHhCCCCCEE--EECCCCCHHHHHHHHHcCCCEEEEcHHHHhc-CHH-HHHHHHHHHHHHHHHcCCCCHHHH
Confidence 46777887766 79998 7899999999999999999999999999861 354 566789999999998999999999
Q ss_pred cccc
Q 021609 288 LGEA 291 (310)
Q Consensus 288 ~~~~ 291 (310)
.|.+
T Consensus 408 ~G~~ 411 (415)
T 3i65_A 408 IGRK 411 (415)
T ss_dssp TTTT
T ss_pred hChh
Confidence 8864
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=8.9e-10 Score=103.47 Aligned_cols=233 Identities=15% Similarity=0.120 Sum_probs=138.5
Q ss_pred cceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh--cCcceeeccc
Q 021609 23 PFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS--VTIPVMAKAR 100 (310)
Q Consensus 23 ~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~--~~iPv~vk~~ 100 (310)
.+++..|++. +.+...+++++|.++.++|+-+++.-+ +...+....+++. .-.++.+...
T Consensus 53 ~~~l~~PIi~----ApM~~~~~~~lA~Ava~~Gglg~i~~~--------------~s~e~~~~~i~~~p~~l~~v~~~~g 114 (351)
T 2c6q_A 53 QTYSGVPIIA----ANMDTVGTFEMAKVLCKFSLFTAVHKH--------------YSLVQWQEFAGQNPDCLEHLAASSG 114 (351)
T ss_dssp CEEEECCEEE----CSSTTTSCHHHHHHHHHTTCEEECCTT--------------CCHHHHHHHHHHCGGGCTTEEEEEC
T ss_pred CccccCCEEE----CCCCCCCcHHHHHHHHHCCCEEEEcCC--------------CCHHHHHHHHhhCchhhheeEeecC
Confidence 7888899998 555668889999999999977652211 1112233333321 0012333222
Q ss_pred cC--cHHHHHHHHHc--CCCEEEe--CCCCCch---hHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCC
Q 021609 101 IG--HFVEAQILEAI--GIDYVDE--SEVLTPA---DEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAG 170 (310)
Q Consensus 101 ~~--~~~~a~~~~~a--Gad~Vi~--~~~~~~~---~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~ 170 (310)
.. ..+.++.+.+. |++.+.. +.. .+. +..+.+++..+++++++ .+.|.++++++.++|+|+|.+....+
T Consensus 115 ~~~~~~~~~~~l~~~~~g~~~i~i~~~~g-~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G 193 (351)
T 2c6q_A 115 TGSSDFEQLEQILEAIPQVKYICLDVANG-YSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPG 193 (351)
T ss_dssp SSHHHHHHHHHHHHHCTTCCEEEEECSCT-TBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCS
T ss_pred CChHHHHHHHHHHhccCCCCEEEEEecCC-CcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCC
Confidence 22 23556666676 9998742 222 233 34444444333676665 58899999999999999998753322
Q ss_pred CcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHh---hcCCCCEEEeCCCCCCCHHHHHHHHHcCC
Q 021609 171 TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTK---QLGRLPVVHFAAGGVATPADAAMMMQLGC 246 (310)
Q Consensus 171 ~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~---~~~~iPVi~iA~GGI~t~~d~~~~l~~Ga 246 (310)
+... . + .+ .+. .+....+.++. +..++||+ ++|||+++.|+.+++.+||
T Consensus 194 ~~~~--~----r-------~~------------~g~~~p~~~~l~~v~~~~~~~~ipvI--a~GGI~~g~di~kAlalGA 246 (351)
T 2c6q_A 194 SVCT--T----R-------KK------------TGVGYPQLSAVMECADAAHGLKGHII--SDGGCSCPGDVAKAFGAGA 246 (351)
T ss_dssp TTBC--H----H-------HH------------HCBCCCHHHHHHHHHHHHHHTTCEEE--EESCCCSHHHHHHHHHTTC
T ss_pred cCcC--c----c-------cc------------CCCCccHHHHHHHHHHHHhhcCCcEE--EeCCCCCHHHHHHHHHcCC
Confidence 1110 0 0 00 011 22333333332 22479998 7899999999999999999
Q ss_pred CEEEEccccccCCCH---------------HHH--HHHHHHH---HhccC--------------Chhhhhhhhhhcccch
Q 021609 247 DGVFVGSGVFKSGDP---------------VKR--AQAIVRA---VTHYS--------------DPEVLAEVSCGLGEAM 292 (310)
Q Consensus 247 dgV~VGsai~~a~dp---------------~~~--a~~l~~~---i~~~~--------------~~~~~~~~~~~~~~~~ 292 (310)
|+|++|++|+.++.. +.+ ...+... .+.|. -.+.+..+...+...|
T Consensus 247 ~~V~vG~~fl~~~Es~~~~~~~~g~~~k~~~g~~~~~a~~~~~g~~~~~~~~~g~~~~~~~~g~v~~~~~~l~~~l~~~m 326 (351)
T 2c6q_A 247 DFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTVEVPFKGDVEHTIRDILGGIRSTC 326 (351)
T ss_dssp SEEEESTTTTTBTTSCSCEEEETTEEEEEEECTTBHHHHHHHSSSCCTTCCCCBCEEEEECCBCHHHHHHHHHHHHHHHH
T ss_pred CceeccHHHhcCccCcchhhhhcCeeeeeccccccHhhhhcccccccccccccceEEEeeccCcHHHHHHHHHHHHHHHH
Confidence 999999999864322 000 0001100 00011 1234567888888999
Q ss_pred hcccCccch
Q 021609 293 VGLNLSDHK 301 (310)
Q Consensus 293 ~~~~~~~~~ 301 (310)
-.+|.++++
T Consensus 327 ~~~G~~~i~ 335 (351)
T 2c6q_A 327 TYVGAAKLK 335 (351)
T ss_dssp HHHTCSBGG
T ss_pred HHcCCCCHH
Confidence 999988875
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-09 Score=104.93 Aligned_cols=129 Identities=20% Similarity=0.239 Sum_probs=92.8
Q ss_pred HHHHHHHHHcCCCEEE--eCCCC--CchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVD--ESEVL--TPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi--~~~~~--~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.++ .++.- ...+..+.+++..++++++++ +.|.+.++.++++|+|.|.+.-.. |.+|++
T Consensus 283 ~eR~~aLv~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGp--GSiCtT- 359 (556)
T 4af0_A 283 KDRLKLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGS--GSICIT- 359 (556)
T ss_dssp HHHHHHHHHTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSC--STTBCC-
T ss_pred HHHHHHHHhcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecCCC--Cccccc-
Confidence 4778899999999995 44432 245667777776678888887 889999999999999999986322 233310
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHH---hhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQT---KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i---~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
|.+. +.+.| ...+.++ ++...+||| |.|||+++.|+.+++.+|||.||+|+.
T Consensus 360 ----------r~v~------------GvG~PQ~tAi~~~a~~a~~~~vpvI--ADGGI~~sGDi~KAlaaGAd~VMlGsl 415 (556)
T 4af0_A 360 ----------QEVM------------AVGRPQGTAVYAVAEFASRFGIPCI--ADGGIGNIGHIAKALALGASAVMMGGL 415 (556)
T ss_dssp ----------TTTC------------CSCCCHHHHHHHHHHHHGGGTCCEE--EESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred ----------cccc------------CCCCcHHHHHHHHHHHHHHcCCCEE--ecCCcCcchHHHHHhhcCCCEEEEchh
Confidence 1111 22222 2223222 233579998 889999999999999999999999999
Q ss_pred cccCC
Q 021609 255 VFKSG 259 (310)
Q Consensus 255 i~~a~ 259 (310)
|...+
T Consensus 416 lAGt~ 420 (556)
T 4af0_A 416 LAGTT 420 (556)
T ss_dssp TTTBT
T ss_pred hcccc
Confidence 98754
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3.5e-10 Score=105.49 Aligned_cols=48 Identities=29% Similarity=0.490 Sum_probs=42.1
Q ss_pred CcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 208 APYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 208 ~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+.++.+.++++.. ++||+ ++|||++++|+.+++.+|||+|++|++++.
T Consensus 242 ~~~~~l~~v~~~~~~ipvi--a~GGI~~~~d~~kal~~GAd~V~igr~~l~ 290 (332)
T 1vcf_A 242 PTARAILEVREVLPHLPLV--ASGGVYTGTDGAKALALGADLLAVARPLLR 290 (332)
T ss_dssp BHHHHHHHHHHHCSSSCEE--EESSCCSHHHHHHHHHHTCSEEEECGGGHH
T ss_pred cHHHHHHHHHHhcCCCeEE--EECCCCCHHHHHHHHHhCCChHhhhHHHHH
Confidence 4466777777766 79998 789999999999999999999999999995
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-10 Score=111.77 Aligned_cols=87 Identities=22% Similarity=0.372 Sum_probs=63.5
Q ss_pred CCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
++++++ .+.+.++++++.++|+|.|.+++++++.- + ...++++.+.++.
T Consensus 343 ~~PvivKgv~~~e~A~~a~~aGad~I~vs~hgG~~~-------------------d-----------~~~~~~~~l~~v~ 392 (511)
T 1kbi_A 343 KLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQL-------------------D-----------FSRAPIEVLAETM 392 (511)
T ss_dssp SSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSS-------------------T-----------TCCCHHHHHHHHH
T ss_pred CCcEEEEeCCCHHHHHHHHHcCCCEEEEcCCCCccC-------------------C-----------CCCchHHHHHHHH
Confidence 444444 35567888888899999998876544210 0 1123455555555
Q ss_pred hcC-------CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 218 QLG-------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 218 ~~~-------~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+.. ++||+ ++|||+++.|+.+++.+|||+|++|++++.
T Consensus 393 ~~v~~~~~~~~ipVi--a~GGI~~g~Dv~kaLalGAdaV~iGr~~l~ 437 (511)
T 1kbi_A 393 PILEQRNLKDKLEVF--VDGGVRRGTDVLKALCLGAKGVGLGRPFLY 437 (511)
T ss_dssp HHHHTTTCBTTBEEE--EESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHhhccCCCcEEE--EECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 433 79998 789999999999999999999999998885
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-09 Score=100.40 Aligned_cols=204 Identities=16% Similarity=0.201 Sum_probs=124.1
Q ss_pred eccCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEecc----------CCccccccc---------CCCC---
Q 021609 19 TKKSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALE----------RVPADIRSQ---------GGVA--- 76 (310)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~----------~~~~~~~~~---------~G~~--- 76 (310)
++...+.+..|++. ..+..++++++|+++.++|+-+++.-+ ...+++.+- .+..
T Consensus 59 t~l~g~~l~~Pii~----Apm~g~~~~~~a~a~a~~G~~gvl~~~~~~~~~~~~~~~~eeia~~~~~~d~~~g~~~~~q~ 134 (393)
T 2qr6_A 59 WHIDAYKFDLPFMN----HPSDALASPEFVIEMGKQGGLGVINAEGLWGRHADLDEAIAKVIAAYEEGDQAAATRTLQEL 134 (393)
T ss_dssp EEETTEEESSSEEE----CCCTTTCCHHHHHHHHHTTSBCEEETTSSTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEcccccCCCeEe----CCCCCcccHHHHHHHHHcCCcEEEEecceecccCCchhHHHHHHHHHHhcCCCccchhhhhc
Confidence 33455667788887 445578889999999999988775431 000000000 0000
Q ss_pred -CCC-CHH----HHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEEeC--C----CC----CchhHHHHHHhcCCC
Q 021609 77 -RMS-DPQ----LIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVDES--E----VL----TPADEENHINKHNFR 139 (310)
Q Consensus 77 -~~~-~~~----~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~~--~----~~----~~~~~~~~i~~~~~~ 139 (310)
..+ +.+ .++++++. +.|++++.... ..+.++.+.++|+|.+... . .. ...++.. +.+. .+
T Consensus 135 ~~~~~d~~~~~~~i~~~~~~-g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~-l~~~-~~ 211 (393)
T 2qr6_A 135 HAAPLDTELLSERIAQVRDS-GEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKE-FIGS-LD 211 (393)
T ss_dssp HHSCCCHHHHHHHHHHHHHT-TSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHH-HHHH-CS
T ss_pred ccccCCHHHHHHHHHHHhhc-CCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHH-HHHh-cC
Confidence 001 222 33333433 77877765433 3456777888999998521 1 11 2233333 3332 46
Q ss_pred CcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHh
Q 021609 140 IPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTK 217 (310)
Q Consensus 140 i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~ 217 (310)
+++++ ++.|.++++++.+.|+|.|.+ +.++.+. + .+. .. .+.++.+.++.
T Consensus 212 ~pvi~ggi~t~e~a~~~~~~Gad~i~v-g~Gg~~~--------~-------~~~------------~~g~~~~~~l~~v~ 263 (393)
T 2qr6_A 212 VPVIAGGVNDYTTALHMMRTGAVGIIV-GGGENTN--------S-------LAL------------GMEVSMATAIADVA 263 (393)
T ss_dssp SCEEEECCCSHHHHHHHHTTTCSEEEE-SCCSCCH--------H-------HHT------------SCCCCHHHHHHHHH
T ss_pred CCEEECCcCCHHHHHHHHHcCCCEEEE-CCCcccc--------c-------ccC------------CCCCChHHHHHHHH
Confidence 77766 588999999999999999998 4322110 0 000 11 23355555444
Q ss_pred hc-------C---CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 218 QL-------G---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 218 ~~-------~---~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
+. . ++||+ ++|||+++.|+.+++.+|||+|++|++++.+.
T Consensus 264 ~~~~~~~~~~~~~~ipvi--a~GGI~~~~dv~kalalGA~~V~iG~~~l~~~ 313 (393)
T 2qr6_A 264 AARRDYLDETGGRYVHII--ADGSIENSGDVVKAIACGADAVVLGSPLARAE 313 (393)
T ss_dssp HHHHHHHHHHTSCCCEEE--ECSSCCSHHHHHHHHHHTCSEEEECGGGGGST
T ss_pred HHHHHhHhhcCCcceEEE--EECCCCCHHHHHHHHHcCCCEEEECHHHHcCC
Confidence 43 2 28998 89999999999999999999999999997754
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.4e-09 Score=104.79 Aligned_cols=129 Identities=17% Similarity=0.183 Sum_probs=91.1
Q ss_pred HHHHHHHHHcCCCEEE-eCCCCCch---hHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVD-ESEVLTPA---DEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi-~~~~~~~~---~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.+. .+...... +..+.+++..+++++++. +.+.++++.+.++|+|+|.+....++. +..
T Consensus 231 ~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~--~~t- 307 (490)
T 4avf_A 231 GERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSI--CTT- 307 (490)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTT--CHH-
T ss_pred HHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcC--CCc-
Confidence 5778999999999995 22222222 455555554457777665 899999999999999999984322221 110
Q ss_pred HHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
+. + .+. .+.+..+.++.+ ..++||| ++|||++++|+.+++.+|||+|++||+
T Consensus 308 ---~~-------~------------~g~g~p~~~~l~~v~~~~~~~~iPVI--a~GGI~~~~di~kal~~GAd~V~vGs~ 363 (490)
T 4avf_A 308 ---RI-------V------------AGVGVPQISAIANVAAALEGTGVPLI--ADGGIRFSGDLAKAMVAGAYCVMMGSM 363 (490)
T ss_dssp ---HH-------H------------TCBCCCHHHHHHHHHHHHTTTTCCEE--EESCCCSHHHHHHHHHHTCSEEEECTT
T ss_pred ---cc-------c------------CCCCccHHHHHHHHHHHhccCCCcEE--EeCCCCCHHHHHHHHHcCCCeeeecHH
Confidence 00 0 012 334566666655 2479998 789999999999999999999999999
Q ss_pred cccCC
Q 021609 255 VFKSG 259 (310)
Q Consensus 255 i~~a~ 259 (310)
|+.++
T Consensus 364 ~~~~~ 368 (490)
T 4avf_A 364 FAGTE 368 (490)
T ss_dssp TTTBT
T ss_pred HhcCC
Confidence 99854
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6.8e-10 Score=104.93 Aligned_cols=95 Identities=22% Similarity=0.284 Sum_probs=71.4
Q ss_pred HHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 130 ENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 130 ~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
++.+++. .++++++ .+.+.++++++.++|+|+|.++++++... + ...+
T Consensus 221 i~~lr~~-~~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr~~-------------------~-----------~g~~ 269 (368)
T 2nli_A 221 IEEIAGH-SGLPVFVKGIQHPEDADMAIKRGASGIWVSNHGARQL-------------------Y-----------EAPG 269 (368)
T ss_dssp HHHHHHH-SSSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSC-------------------S-----------SCCC
T ss_pred HHHHHHH-cCCCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcCCC-------------------C-----------CCCC
Confidence 4444442 3556555 47889999999999999999977543110 0 1234
Q ss_pred cHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 209 ~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+++.+.++++.. ++||+ ++|||++++|+.+++.+|||+|++|++++.
T Consensus 270 ~~~~l~~v~~~v~~~ipVi--a~GGI~~g~D~~kalalGAd~V~iGr~~l~ 318 (368)
T 2nli_A 270 SFDTLPAIAERVNKRVPIV--FDSGVRRGEHVAKALASGADVVALGRPVLF 318 (368)
T ss_dssp HHHHHHHHHHHHTTSSCEE--ECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred hHHHHHHHHHHhCCCCeEE--EECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 567777777654 69998 899999999999999999999999998875
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=102.15 Aligned_cols=95 Identities=20% Similarity=0.310 Sum_probs=72.3
Q ss_pred HHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 130 ENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 130 ~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
.+.+++. .++++++ .+.+.++++++.+.|+|.|.++|++++.. + ...+
T Consensus 209 i~~lr~~-~~~PvivK~v~~~e~A~~a~~~GaD~I~vsn~GG~~~---------------------d---------~~~~ 257 (352)
T 3sgz_A 209 LSLLQSI-TRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQL---------------------D---------EVSA 257 (352)
T ss_dssp HHHHHHH-CCSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTSS---------------------C---------SSCC
T ss_pred HHHHHHh-cCCCEEEEecCcHHHHHHHHHcCCCEEEEeCCCCCcc---------------------C---------CCcc
Confidence 4444432 3566655 47899999999999999999987644210 0 1234
Q ss_pred cHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 209 ~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+++.+.++.+.. ++||+ ++|||+++.|+.+++.+|||+|++|++++-
T Consensus 258 ~~~~L~~i~~av~~~ipVi--a~GGI~~g~Dv~kaLalGA~aV~iGr~~l~ 306 (352)
T 3sgz_A 258 SIDALREVVAAVKGKIEVY--MDGGVRTGTDVLKALALGARCIFLGRPILW 306 (352)
T ss_dssp HHHHHHHHHHHHTTSSEEE--EESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred HHHHHHHHHHHhCCCCeEE--EECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 567777776544 79998 789999999999999999999999998884
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=6.4e-10 Score=105.89 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=70.8
Q ss_pred HHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 130 ENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 130 ~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
++.+++ ..++++++ .+.+.++++++.++|+|.|.++++++... + ...+
T Consensus 244 i~~lr~-~~~~PvivKgv~~~e~A~~a~~aGad~I~vs~~ggr~~-------------------~-----------~g~~ 292 (392)
T 2nzl_A 244 IKWLRR-LTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQL-------------------D-----------GVPA 292 (392)
T ss_dssp HHHHC---CCSCEEEEEECCHHHHHHHHHTTCCEEEECCGGGTSS-------------------T-----------TCCC
T ss_pred HHHHHH-hhCCCEEEEecCCHHHHHHHHHcCCCEEEeCCCCCCcC-------------------C-----------CCcC
Confidence 444433 23566666 57889999999999999999977543110 0 1234
Q ss_pred cHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 209 ~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+++.+.++++.. ++||+ ++|||++++|+.+++.+|||+|++|++++.
T Consensus 293 ~~~~l~~v~~av~~~ipVi--a~GGI~~g~Dv~kalalGAd~V~iGr~~l~ 341 (392)
T 2nzl_A 293 TIDVLPEIVEAVEGKVEVF--LDGGVRKGTDVLKALALGAKAVFVGRPIVW 341 (392)
T ss_dssp HHHHHHHHHHHHTTSSEEE--ECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred hHHHHHHHHHHcCCCCEEE--EECCCCCHHHHHHHHHhCCCeeEECHHHHH
Confidence 567777776654 59998 899999999999999999999999998885
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=7.7e-10 Score=117.31 Aligned_cols=190 Identities=19% Similarity=0.212 Sum_probs=113.2
Q ss_pred HHHHHHHHcCCcEEEecc-CCccccc-ccCCCCCCCCHH----HHHHHHhhcCcceeeccccCc---HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALE-RVPADIR-SQGGVARMSDPQ----LIKEIKQSVTIPVMAKARIGH---FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~~-~~~G~~~~~~~~----~i~~i~~~~~iPv~vk~~~~~---~~~a~~~~~aGad 116 (310)
+.++.++++|+++| ++| .+|...+ ...|+.++.+++ .++.+++.+++||++|...+. .+.++.+.++|+|
T Consensus 652 ~~a~~~~~~g~d~i-ein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~~~a~~~~~~G~d 730 (1025)
T 1gte_A 652 ELSRKAEASGADAL-ELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGAD 730 (1025)
T ss_dssp HHHHHHHHTTCSEE-EEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCS
T ss_pred HHHHHHHhcCCCEE-EEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeCCChHHHHHHHHHHHHcCCC
Confidence 46777788999987 666 2232221 122455555555 555567778999999987642 3456777777777
Q ss_pred EEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccCh
Q 021609 117 YVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 117 ~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
+|+.++.+... .+.++.. + +.-.+..|++...+. +. .+
T Consensus 731 ~i~v~Nt~~~~--------~~~~~~~-----~----------~~~~~~~~gr~~~gg-----------------~s--g~ 768 (1025)
T 1gte_A 731 GVTATNTVSGL--------MGLKADG-----T----------PWPAVGAGKRTTYGG-----------------VS--GT 768 (1025)
T ss_dssp EEEECCCEEEC--------CCBCTTS-----C----------BSSCBTTTTBBCCEE-----------------EE--SG
T ss_pred EEEEecccccc--------ccccccc-----c----------ccccccccccccCCC-----------------CC--cc
Confidence 77533211000 0000000 0 000000011100000 00 00
Q ss_pred hHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
. .....++.++++++.. ++||+ ++|||.|++|+.+++.+|||+|++|++++. +|+...+.+.+.++.+
T Consensus 769 ~-------~~~~~~~~v~~v~~~~~~ipvi--~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~--~~~~~~~~~~~~l~~~ 837 (1025)
T 1gte_A 769 A-------IRPIALRAVTTIARALPGFPIL--ATGGIDSAESGLQFLHSGASVLQVCSAVQN--QDFTVIQDYCTGLKAL 837 (1025)
T ss_dssp G-------GHHHHHHHHHHHHHHSTTCCEE--EESSCCSHHHHHHHHHTTCSEEEESHHHHT--SCTTHHHHHHHHHHHH
T ss_pred c-------chhHHHHHHHHHHHHcCCCCEE--EecCcCCHHHHHHHHHcCCCEEEEeecccc--CCccHHHHHHHHHHHH
Confidence 0 0011145677777766 89998 789999999999999999999999999996 3445677788888888
Q ss_pred CChhhhhhhhhhcc
Q 021609 276 SDPEVLAEVSCGLG 289 (310)
Q Consensus 276 ~~~~~~~~~~~~~~ 289 (310)
+...++.++++..|
T Consensus 838 l~~~G~~~i~~l~g 851 (1025)
T 1gte_A 838 LYLKSIEELQGWDG 851 (1025)
T ss_dssp HHHTTCGGGTTSBT
T ss_pred HHHcCCCCHHHHhC
Confidence 88888888888777
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-09 Score=121.30 Aligned_cols=207 Identities=12% Similarity=0.118 Sum_probs=141.7
Q ss_pred cceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEE-eccCCcccccccCCCCCCCCHHHHHHHHhhc--Ccceeecc
Q 021609 23 PFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM-ALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKA 99 (310)
Q Consensus 23 ~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~-~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~ 99 (310)
.|+ +.|+++ +|+-..++++++|.++.++|.-+++ .... .......+.++++++.. +.|+.++.
T Consensus 579 ~lg-~~PIi~---a~M~~~vs~~~LaaAva~aGglG~i~g~g~----------~~~e~l~~~i~~vk~~~~~~~p~gvN~ 644 (2060)
T 2uva_G 579 LLG-VPPVMV---AGMTPTTVPWDFVAATMNAGYHIELAGGGY----------YNAQKMSDAISKIEKAIPPGRGITVNL 644 (2060)
T ss_dssp HHT-SCSEEE---CCCTTTTCSHHHHHHHHHTTCEECEEGGGC----------CSHHHHHHHHHHHGGGSCTTCCEEEEE
T ss_pred ccc-cceEEe---cCCCCccccHHHHHHHHHCCCEEEECcCCC----------CCHHHHHHHHHHHHhhcccCCCeEecc
Confidence 355 788888 5544478999999999999988764 2210 00001135677777777 68999986
Q ss_pred cc-Cc------HHHHHHHHHcCCCE--EEeCCCC-CchhHHHHHHhcCCCCcEEEecCCHHHHHHH----HHhCCCEEE-
Q 021609 100 RI-GH------FVEAQILEAIGIDY--VDESEVL-TPADEENHINKHNFRIPFVCGCRNLGEALRR----IREGAAMIR- 164 (310)
Q Consensus 100 ~~-~~------~~~a~~~~~aGad~--Vi~~~~~-~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~----~~~Gad~V~- 164 (310)
.. .. .+.++.+.+.|++. |...... +.+++.+.++.. ++.++..+.+..++.++ .++|+|.+.
T Consensus 645 ~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~p~~e~~~~~l~~~--gi~~i~~v~~~~~a~~~v~~l~~aG~D~iV~ 722 (2060)
T 2uva_G 645 IYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGVPSIEVANEYIQTL--GIRHISFKPGSVDAIQQVINIAKANPTFPII 722 (2060)
T ss_dssp ETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSCCCHHHHHHHHHHS--CCSEEEECCCSHHHHHHHHHHHHHCTTSCEE
T ss_pred cccCcccchhHHHHHHHHHHcCCCcceEeecCCCCCHHHHHHHHHHc--CCeEEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 54 21 14568888999999 7654444 344677777664 66666667777888877 789999987
Q ss_pred --EcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHH
Q 021609 165 --TKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 165 --v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l 242 (310)
+.|...+|+. ... | ...+.+.++.++++..++||+ ++|||.+++++.+++
T Consensus 723 ~q~~G~eaGGH~------------------g~~-d-------~~~~~l~lv~~i~~~~~ipvi--aaGGI~~g~~i~aal 774 (2060)
T 2uva_G 723 LQWTGGRGGGHH------------------SFE-D-------FHQPILLMYSRIRKCSNIVLV--AGSGFGGSEDTYPYL 774 (2060)
T ss_dssp EEECCTTSSSSC------------------CSC-C-------SHHHHHHHHHHHHTSTTEEEE--EESSCCSHHHHHHHH
T ss_pred eeeEcccCCCCC------------------Ccc-c-------ccchHHHHHHHHHHHcCCCEE--EeCCCCCHHHHHHHh
Confidence 6665444431 000 0 001236788999998899998 789999999999999
Q ss_pred -----------HcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 243 -----------QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 243 -----------~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
.+|||||++||+++-++.. .+...+++++.+
T Consensus 775 tg~ws~~~g~palGAdgV~~GT~f~~t~Ea-~~s~~~K~~lv~ 816 (2060)
T 2uva_G 775 TGSWSTKFGYPPMPFDGCMFGSRMMTAKEA-HTSKQAKQAIVD 816 (2060)
T ss_dssp HTCGGGTTTSCCCCCSCEEESGGGGGBTTS-CCCHHHHHHHHT
T ss_pred cCcchhhcCCCCCCCCEEEEchhhhcCcCC-CCCHHHHHHHHh
Confidence 9999999999999986532 122335555544
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=8.4e-10 Score=106.42 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=66.1
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCG 287 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~ 287 (310)
++.++++++.+ ++||| +.|||.|++|+.+++.+|||+|++||+++. .+|+ ..+++.+.+..++...++.++++.
T Consensus 360 l~~i~~v~~~v~~~iPVI--g~GGI~s~~DA~e~l~aGAd~Vqigrall~-~gP~-l~~~i~~~l~~~l~~~G~~si~e~ 435 (443)
T 1tv5_A 360 TKFICEMYNYTNKQIPII--ASGGIFSGLDALEKIEAGASVCQLYSCLVF-NGMK-SAVQIKRELNHLLYQRGYYNLKEA 435 (443)
T ss_dssp HHHHHHHHHHTTTCSCEE--EESSCCSHHHHHHHHHTTEEEEEESHHHHH-HGGG-HHHHHHHHHHHHHHHHTCSSSGGG
T ss_pred HHHHHHHHHHcCCCCcEE--EECCCCCHHHHHHHHHcCCCEEEEcHHHHh-cChH-HHHHHHHHHHHHHHHhCCCCHHHH
Confidence 56778888776 89998 789999999999999999999999999764 2564 556688888888888889999998
Q ss_pred cccc
Q 021609 288 LGEA 291 (310)
Q Consensus 288 ~~~~ 291 (310)
.|.+
T Consensus 436 ~G~~ 439 (443)
T 1tv5_A 436 IGRK 439 (443)
T ss_dssp TTTT
T ss_pred hhhh
Confidence 8865
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.01 E-value=4.9e-09 Score=102.76 Aligned_cols=129 Identities=16% Similarity=0.163 Sum_probs=90.9
Q ss_pred HHHHHHHHHcCCCEEEe-CCCCC---chhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVDE-SEVLT---PADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~-~~~~~---~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.|.. +.... ..+..+.+++..+++++++. +.+.++++.+.++|+|+|.+.+..++....
T Consensus 233 ~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~~~t--- 309 (496)
T 4fxs_A 233 EERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSICTT--- 309 (496)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCTTBCH---
T ss_pred HHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEECCCCCcCccc---
Confidence 57889999999999952 22112 22555556554457777664 899999999999999999986432221100
Q ss_pred HHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
+. + ... .+.+..+.++.+ ..++||+ ++|||++++|+.+++.+|||+|++||+
T Consensus 310 ---r~-------~------------~g~g~p~~~~i~~v~~~~~~~~iPVI--a~GGI~~~~di~kala~GAd~V~iGs~ 365 (496)
T 4fxs_A 310 ---RI-------V------------TGVGVPQITAIADAAGVANEYGIPVI--ADGGIRFSGDISKAIAAGASCVMVGSM 365 (496)
T ss_dssp ---HH-------H------------HCCCCCHHHHHHHHHHHHGGGTCCEE--EESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred ---cc-------c------------cCCCccHHHHHHHHHHHhccCCCeEE--EeCCCCCHHHHHHHHHcCCCeEEecHH
Confidence 00 0 012 234555555554 2479998 889999999999999999999999999
Q ss_pred cccCC
Q 021609 255 VFKSG 259 (310)
Q Consensus 255 i~~a~ 259 (310)
|+.++
T Consensus 366 f~~t~ 370 (496)
T 4fxs_A 366 FAGTE 370 (496)
T ss_dssp TTTBT
T ss_pred HhcCC
Confidence 99864
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.8e-10 Score=126.98 Aligned_cols=192 Identities=18% Similarity=0.202 Sum_probs=132.8
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCC-CCCCCHHHHHHHHhhc--Ccceeec
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGV-ARMSDPQLIKEIKQSV--TIPVMAK 98 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~-~~~~~~~~i~~i~~~~--~iPv~vk 98 (310)
..|+ ++|+++ +|+....+++++|.++.++|.-+.+.- +|. ......+.++++++.+ +.|+.++
T Consensus 423 ~~lg-~~PIi~---a~M~~~~s~~~LaaAVs~AGglG~l~~----------~g~~~~~~l~~~i~~~r~~~~~~~p~~vN 488 (3089)
T 3zen_D 423 RLTG-RSPILL---AGMTPTTVDAKIVAAAANAGHWAELAG----------GGQVTEQIFNDRIAELETLLEPGRAIQFN 488 (3089)
T ss_dssp HHHS-SCSEEE---CCCHHHHTSHHHHHHHHHTTCEEEECS----------TTCCSHHHHHHHHHHHHHHSCTTCCCEEE
T ss_pred hhcC-CCCEEe---CCCcCCcCCHHHHHHHHhCCCceeecC----------CCCCCHHHHHHHHHHHHHhcCCCCceeec
Confidence 4466 788888 565555678999999999998876311 111 0011135677777777 6788776
Q ss_pred ccc-Cc---------HHHHHHHHHcC--CCEEEeCCCCC-chhHHHHHHh-cCCCCcEEE-ecCCHHHHHHHHHhCCC--
Q 021609 99 ARI-GH---------FVEAQILEAIG--IDYVDESEVLT-PADEENHINK-HNFRIPFVC-GCRNLGEALRRIREGAA-- 161 (310)
Q Consensus 99 ~~~-~~---------~~~a~~~~~aG--ad~Vi~~~~~~-~~~~~~~i~~-~~~~i~~~v-~~~t~~ea~~~~~~Gad-- 161 (310)
... +. ...++.+.+.| +|+|+.+.+++ .++..+++.. +..++.++. .+.|.++++++.+.|+|
T Consensus 489 l~~~~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~~ee~~~~i~~l~~~Gi~~i~~~~~t~~~a~~~~~i~~d~~ 568 (3089)
T 3zen_D 489 TLFLDPYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIPDLEEAVDIIDELNEVGISHVVFKPGTVEQIRSVIRIAAEVP 568 (3089)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCCCHHHHHHHHTSTTHHHHCSEEECCCSHHHHHHHHHHHTTST
T ss_pred hhhcChhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCCchhHhHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHhhhhcC
Confidence 543 21 24578889999 88897665555 3444444433 223544444 78899999999999888
Q ss_pred ----EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHH----HHHHHhhcCCCCEEEeCCCCCC
Q 021609 162 ----MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYD----LVMQTKQLGRLPVVHFAAGGVA 233 (310)
Q Consensus 162 ----~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~----~i~~i~~~~~iPVi~iA~GGI~ 233 (310)
+|.+.|..++||.. ...... .+.++++..++||+ ++|||.
T Consensus 569 ~~~y~vv~~G~eaGGH~g------------------------------~~~~~~ll~~~~~~ir~~~~iPVi--aaGGI~ 616 (3089)
T 3zen_D 569 TKPVIVHIEGGRAGGHHS------------------------------WEDLDDLLLATYSELRSRSNITIC--VGGGIG 616 (3089)
T ss_dssp TSCEEEEECCSSSSEECC------------------------------SCCHHHHHHHHHHHHTTCTTEEEE--EESSCC
T ss_pred CCcEEEEEeCCCcCCCCC------------------------------cccHHHHHHHHHHHHhhcCCCeEE--EEeCCC
Confidence 77777776656510 011122 34777887889998 789999
Q ss_pred CHHHHHHHH-----------HcCCCEEEEccccccCC
Q 021609 234 TPADAAMMM-----------QLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 234 t~~d~~~~l-----------~~GadgV~VGsai~~a~ 259 (310)
+++++..++ .+|||||++||+|+.+.
T Consensus 617 d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~ 653 (3089)
T 3zen_D 617 TPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATL 653 (3089)
T ss_dssp CTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCT
T ss_pred CHHHHHHHhccccccccCccCCCCCEEEecHHHHhCc
Confidence 999999999 99999999999999865
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.2e-08 Score=100.43 Aligned_cols=181 Identities=15% Similarity=0.189 Sum_probs=111.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-------cCcceeecccc--CcHHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS-------VTIPVMAKARI--GHFVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~-------~~iPv~vk~~~--~~~~~a~~~~~aGad 116 (310)
++...+.+.+...+..+|.. ...-|. ....+.++.+... ..+++.+.... ...+.++.+.++|+|
T Consensus 197 eal~~m~~~~i~~lpVVDe~----g~l~Gi--IT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd 270 (511)
T 3usb_A 197 EAEKILQKYKIEKLPLVDNN----GVLQGL--ITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVD 270 (511)
T ss_dssp HHHHHHHHHTCSEEEEECTT----SBEEEE--EEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEEEeCC----CCEeee--ccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHhhccc
Confidence 56677788888877444310 111111 1223455554321 12333333322 235778889999999
Q ss_pred EEEe-CCCCC---chhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEee
Q 021609 117 YVDE-SEVLT---PADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 117 ~Vi~-~~~~~---~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
.+.. +..-. ..+.++.+++..+++++++ .+.+.++++.+.++|+|+|.+....++ ++.. + .+
T Consensus 271 ~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gs--i~~~----~-------~~ 337 (511)
T 3usb_A 271 AIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGS--ICTT----R-------VV 337 (511)
T ss_dssp EEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCST--TCCH----H-------HH
T ss_pred eEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCcc--cccc----c-------cc
Confidence 9952 22111 2345556655445666655 689999999999999999998432221 1110 0 00
Q ss_pred cccChhHHHHhhhcc-CCcHHHHHHH---hhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 192 RNMDDDEVFTFAKKI-AAPYDLVMQT---KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~-~~~~~~i~~i---~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+. .+.+..+.++ .+..++||| |+|||+++.|+.+++.+|||+|++||+|+.+.
T Consensus 338 ------------~g~g~p~~~~l~~v~~~~~~~~iPVI--a~GGI~~~~di~kala~GA~~V~vGs~~~~~~ 395 (511)
T 3usb_A 338 ------------AGVGVPQLTAVYDCATEARKHGIPVI--ADGGIKYSGDMVKALAAGAHVVMLGSMFAGVA 395 (511)
T ss_dssp ------------HCCCCCHHHHHHHHHHHHHTTTCCEE--EESCCCSHHHHHHHHHTTCSEEEESTTTTTBT
T ss_pred ------------cCCCCCcHHHHHHHHHHHHhCCCcEE--EeCCCCCHHHHHHHHHhCchhheecHHHhcCc
Confidence 012 3335555444 333579998 88999999999999999999999999997754
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.9e-09 Score=97.03 Aligned_cols=150 Identities=19% Similarity=0.238 Sum_probs=99.0
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCCCC----CHHHHHHHHhhcCcceeeccccCcHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVARMS----DPQLIKEIKQSVTIPVMAKARIGHFVEAQ 108 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~~~----~~~~i~~i~~~~~iPv~vk~~~~~~~~a~ 108 (310)
+.|+.+.++|+|+| +|+ |. +...+.+||+- .. ..+.++.++++++.||.++.....+..
T Consensus 148 ~aA~~a~~aGfDgV-Eih~a~GyLl~qFlsp~~N~R~D~yGGsl-enR~r~~~eiv~avr~~v~~pv~vRls~~~~~~-- 223 (340)
T 3gr7_A 148 NGARRAKEAGFDVI-EIHAAHGYLINEFLSPLSNRRQDEYGGSP-ENRYRFLGEVIDAVREVWDGPLFVRISASDYHP-- 223 (340)
T ss_dssp HHHHHHHHHTCSEE-EEEECTTCHHHHHHCTTTCCCCSTTSSSH-HHHHHHHHHHHHHHHHHCCSCEEEEEESCCCST--
T ss_pred HHHHHHHHcCCCEE-EEccccchHHHHcCCCccCcCCCcccCCH-HHHHHHHHHHHHHHHHhcCCceEEEeccccccC--
Confidence 36788889999997 665 21 33445556662 21 135677778888999999877542100
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccce
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
...+..+.. +-++.+.+.|+|+|.++.....+.
T Consensus 224 -------------~g~~~~~~~-------------------~la~~L~~~Gvd~i~vs~g~~~~~--------------- 256 (340)
T 3gr7_A 224 -------------DGLTAKDYV-------------------PYAKRMKEQGVDLVDVSSGAIVPA--------------- 256 (340)
T ss_dssp -------------TSCCGGGHH-------------------HHHHHHHHTTCCEEEEECCCSSCC---------------
T ss_pred -------------CCCCHHHHH-------------------HHHHHHHHcCCCEEEEecCCccCC---------------
Confidence 011122222 224456678999998874321110
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..+ . .....+++++++++..++||+ +.|||.+++++.++++.| ||.|++||+++. ||.
T Consensus 257 -~~~--~---------~~~~~~~~~~~ik~~~~iPVi--~~GgI~s~e~a~~~L~~G~aD~V~iGR~~la--nPd 315 (340)
T 3gr7_A 257 -RMN--V---------YPGYQVPFAELIRREADIPTG--AVGLITSGWQAEEILQNGRADLVFLGRELLR--NPY 315 (340)
T ss_dssp -CCC--C---------CTTTTHHHHHHHHHHTTCCEE--EESSCCCHHHHHHHHHTTSCSEEEECHHHHH--CTT
T ss_pred -CCC--C---------CccccHHHHHHHHHHcCCcEE--eeCCCCCHHHHHHHHHCCCeeEEEecHHHHh--Cch
Confidence 000 0 112346788888888899998 689999999999999998 999999999998 665
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=100.63 Aligned_cols=133 Identities=16% Similarity=0.160 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCCEEEe--CCCCC--chhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVDE--SEVLT--PADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~--~~~~~--~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.|.. +.... ..+..+.+++..+++++++ ++.+.++++++.++|+|+|.+....+ +. +..
T Consensus 257 ~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg~~~G-~~-~~t- 333 (514)
T 1jcn_A 257 KYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVGMGCG-SI-CIT- 333 (514)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCS-CC-BTT-
T ss_pred HHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEECCCCC-cc-ccc-
Confidence 46778899999999963 33222 2355666655434777776 68999999999999999998832111 11 000
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
+....... .....+..+.++++..++||+ ++|||+++.|+.+++.+|||+|++|++|+.+
T Consensus 334 ----------~~~~~~g~--------~~~~~~~~~~~~~~~~~ipVi--a~GGI~~~~di~kala~GAd~V~iG~~~l~~ 393 (514)
T 1jcn_A 334 ----------QEVMACGR--------PQGTAVYKVAEYARRFGVPII--ADGGIQTVGHVVKALALGASTVMMGSLLAAT 393 (514)
T ss_dssp ----------BCCCSCCC--------CHHHHHHHHHHHHGGGTCCEE--EESCCCSHHHHHHHHHTTCSEEEESTTTTTS
T ss_pred ----------ccccCCCc--------cchhHHHHHHHHHhhCCCCEE--EECCCCCHHHHHHHHHcCCCeeeECHHHHcC
Confidence 00000000 011235667777776789998 7899999999999999999999999999985
Q ss_pred C
Q 021609 259 G 259 (310)
Q Consensus 259 ~ 259 (310)
+
T Consensus 394 ~ 394 (514)
T 1jcn_A 394 T 394 (514)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-08 Score=92.81 Aligned_cols=150 Identities=20% Similarity=0.256 Sum_probs=97.2
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCCCC----CHHHHHHHHhhcCcceeeccccCcHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVARMS----DPQLIKEIKQSVTIPVMAKARIGHFVEAQ 108 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~~~----~~~~i~~i~~~~~iPv~vk~~~~~~~~a~ 108 (310)
+.|+.+.++|+|+| +|+ |. +...+.++|+ ... ..+.++.++++++.||.++.....+.
T Consensus 148 ~aA~~a~~aGfDgV-eih~~~gyLl~qFlsp~~n~R~d~yGGs-lenr~r~~~eiv~avr~~v~~pv~vris~~~~~--- 222 (338)
T 1z41_A 148 QAAARAKEAGFDVI-EIHAAHGYLIHEFLSPLSNHRTDEYGGS-PENRYRFLREIIDEVKQVWDGPLFVRVSASDYT--- 222 (338)
T ss_dssp HHHHHHHHTTCSEE-EEEECTTSHHHHHHCTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCS---
T ss_pred HHHHHHHHcCCCEE-EeccccchHHHHccCCCcCCcCcccCcc-hhhhHHHHHHHHHHHHHHcCCcEEEEecCcccC---
Confidence 45778889999997 665 11 2233445555 211 13567777888899999997654210
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccce
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
....+..+.. +-++++.+.|+|+|.++++.....
T Consensus 223 ------------~~g~~~~~~~-------------------~~a~~l~~~Gvd~i~v~~~~~~~~--------------- 256 (338)
T 1z41_A 223 ------------DKGLDIADHI-------------------GFAKWMKEQGVDLIDCSSGALVHA--------------- 256 (338)
T ss_dssp ------------TTSCCHHHHH-------------------HHHHHHHHTTCCEEEEECCCSSCC---------------
T ss_pred ------------CCCCCHHHHH-------------------HHHHHHHHcCCCEEEEecCccccC---------------
Confidence 0011111111 224456678999998876532110
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..+ . .....+++++++++..++||+ +.|||.+++++.++++.| ||.|++||+++. ||.
T Consensus 257 -~~~--~---------~~~~~~~~~~~ir~~~~iPVi--~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~--nPd 315 (338)
T 1z41_A 257 -DIN--V---------FPGYQVSFAEKIREQADMATG--AVGMITDGSMAEEILQNGRADLIFIGRELLR--DPF 315 (338)
T ss_dssp -CCC--C---------CTTTTHHHHHHHHHHHCCEEE--ECSSCCSHHHHHHHHHTTSCSEEEECHHHHH--CTT
T ss_pred -CCC--C---------CccchHHHHHHHHHHCCCCEE--EECCCCCHHHHHHHHHcCCceEEeecHHHHh--Cch
Confidence 000 0 011236778888887789998 789999999999999998 999999999998 564
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.7e-08 Score=89.74 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=50.0
Q ss_pred HHHHHhhcCCC-CEEEeCCCCCC--CHHHHHHHH----HcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChh
Q 021609 212 LVMQTKQLGRL-PVVHFAAGGVA--TPADAAMMM----QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPE 279 (310)
Q Consensus 212 ~i~~i~~~~~i-PVi~iA~GGI~--t~~d~~~~l----~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~ 279 (310)
.++++++..++ ||+ ++|||+ +.+++.+.+ ++||+|+.+|++|++++||...++++.+.+++...++
T Consensus 186 ~~~~~~~~~~~~pV~--asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~dp~~~~~~l~~~v~~~~~~~ 258 (263)
T 1w8s_A 186 TFSWAVKVAGKVPVL--MSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVYGGKKLA 258 (263)
T ss_dssp HHHHHHHHTTTSCEE--EECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHHHHHHHHHC------
T ss_pred HHHHHHHhCCCCeEE--EEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcCHHHHHHHHHHHHhcCCCHH
Confidence 34555544455 988 679999 788776666 8999999999999999999999999999998766544
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=8.3e-09 Score=90.87 Aligned_cols=60 Identities=27% Similarity=0.294 Sum_probs=50.8
Q ss_pred cHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 209 PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 209 ~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
+.++++++++.. ++|++ .+|||+|++++.+++ .|||+|+|||++.+ ||. .++++.+++++
T Consensus 167 ~~~~i~~i~~~~~~~Pv~--vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~--~p~-~~~~~v~a~~~ 227 (228)
T 3vzx_A 167 DIEAVKKTKAVLETSTLF--YGGGIKDAETAKQYA-EHADVIVVGNAVYE--DFD-RALKTVAAVKG 227 (228)
T ss_dssp CHHHHHHHHHHCSSSEEE--EESSCCSHHHHHHHH-TTCSEEEECTHHHH--CHH-HHHHHHHHHHC
T ss_pred CHHHHHHHHHhcCCCCEE--EeCCCCCHHHHHHHH-hCCCEEEEChHHhc--CHH-HHHHHHHHHhc
Confidence 578899998887 79998 689999999999988 79999999999998 664 55667777653
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.2e-09 Score=99.95 Aligned_cols=87 Identities=22% Similarity=0.314 Sum_probs=65.3
Q ss_pred CCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
++++++ .+.+.++++++.++|+|.|.+.+.+++.. | ...++++.+.+++
T Consensus 225 ~~Pv~vkgv~t~e~a~~a~~aGad~I~vs~~gg~~~-----------------------d-------~~~~~~~~l~~v~ 274 (380)
T 1p4c_A 225 PHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQL-----------------------D-------CAISPMEVLAQSV 274 (380)
T ss_dssp CSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTSC-----------------------T-------TCCCGGGTHHHHH
T ss_pred CCCEEEEecCcHHHHHHHHHcCCCEEEEcCCCCCcC-----------------------C-------CCcCHHHHHHHHH
Confidence 445443 46778888888899999988854432110 0 1133466677777
Q ss_pred hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 218 QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 218 ~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+..++||+ ++|||++++|+.+++.+|||+|++|++++.
T Consensus 275 ~~~~~pVi--a~GGI~~~~dv~kal~~GAdaV~iGr~~l~ 312 (380)
T 1p4c_A 275 AKTGKPVL--IDSGFRRGSDIVKALALGAEAVLLGRATLY 312 (380)
T ss_dssp HHHCSCEE--ECSSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred HHcCCeEE--EECCCCCHHHHHHHHHhCCcHhhehHHHHH
Confidence 76677998 899999999999999999999999999986
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=5.6e-09 Score=97.30 Aligned_cols=51 Identities=22% Similarity=0.303 Sum_probs=43.1
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
++.++++++.+ ++||+ ++|||+|++|+.+++++|||+|++||+++. +||+.
T Consensus 276 ~~~i~~i~~~~~~~ipVi--~~GGI~~~~da~~~l~~GAd~V~igr~~l~-~~P~~ 328 (336)
T 1f76_A 276 TEIIRRLSLELNGRLPII--GVGGIDSVIAAREKIAAGASLVQIYSGFIF-KGPPL 328 (336)
T ss_dssp HHHHHHHHHHHTTSSCEE--EESSCCSHHHHHHHHHHTCSEEEESHHHHH-HCHHH
T ss_pred HHHHHHHHHHhCCCCCEE--EECCCCCHHHHHHHHHCCCCEEEeeHHHHh-cCcHH
Confidence 45677777665 79998 789999999999999999999999999874 36863
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-08 Score=111.14 Aligned_cols=210 Identities=12% Similarity=0.135 Sum_probs=138.4
Q ss_pred eec-cCcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEE-ecc-CCcccccccCCCCCCCCHHHHHHHHhhcC--
Q 021609 18 ETK-KSPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVM-ALE-RVPADIRSQGGVARMSDPQLIKEIKQSVT-- 92 (310)
Q Consensus 18 ~~~-~~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~-~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-- 92 (310)
+++ -..|+ ++|+++ +|+..+.+++++|.++.++|.-+++ ... +.+.. ..+.|+++++.++
T Consensus 580 ~t~~t~llg-~~PIi~---~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~~e~-----------l~~~I~~~~~~t~~~ 644 (2051)
T 2uv8_G 580 ETKFSKLIG-RPPLLV---PGMTPCTVSPDFVAATTNAGYTIELAGGGYFSAAG-----------MTAAIDSVVSQIEKG 644 (2051)
T ss_dssp ECHHHHHHS-SCSEEE---CCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCSHHH-----------HHHHHHHHHHHSCTT
T ss_pred HHHHHHhhC-ccceec---CCCccccccHHHHHHHHcCCcEEEEccCCCCCHHH-----------HHHHHHHHHHhcCCC
Confidence 344 34567 589999 6765577799999999999988763 111 11110 1246666676654
Q ss_pred cceeeccccC-c------HHHHHHHHHcCCCE--EEeCCCC-CchhHHHHHHhcCCCCcEEEec----CCHHHHHHHHHh
Q 021609 93 IPVMAKARIG-H------FVEAQILEAIGIDY--VDESEVL-TPADEENHINKHNFRIPFVCGC----RNLGEALRRIRE 158 (310)
Q Consensus 93 iPv~vk~~~~-~------~~~a~~~~~aGad~--Vi~~~~~-~~~~~~~~i~~~~~~i~~~v~~----~t~~ea~~~~~~ 158 (310)
.|+.++..+. . .+.++.+.+.|+.. |...... ...+..+++... ++.++.-+ .....+.++.++
T Consensus 645 ~~~gvN~~~~~~~~~~~~~~~~~~~~~~gv~i~~v~~~ag~p~~~~~~~~i~~l--G~~vi~~~~~~~~a~~~~~~~~~~ 722 (2051)
T 2uv8_G 645 STFGINLIYVNPFMLQWGIPLIKELRSKGYPIQFLTIGAGVPSLEVASEYIETL--GLKYLGLKPGSIDAISQVINIAKA 722 (2051)
T ss_dssp CCEEEEEETTCTTHHHHHHHHHHHHHHTTCSEEEEEEESSCCCHHHHHHHHHHS--CCSCEEECCCSHHHHHHHHHHHHH
T ss_pred CceEEEEeecChhhhhhhHHHHHHHHHcCCCcceEEecCCCCchhhHHHHHHHc--CCEEEEecCchHHHHHHHHHHHHh
Confidence 7888885432 1 25567888999998 7544443 345566677654 55554422 233455777788
Q ss_pred CCCEE---EEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhcCCCCEEEeCCCCCCC
Q 021609 159 GAAMI---RTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQLGRLPVVHFAAGGVAT 234 (310)
Q Consensus 159 Gad~V---~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~~~iPVi~iA~GGI~t 234 (310)
|+|++ .+.|...+||.. .. +. ...+.++.++++..++||| |+|||.+
T Consensus 723 g~d~~ii~~~~G~eaGGH~g------------------~~---------d~~~~~l~l~~~v~~~~~ipvi--aaGGi~d 773 (2051)
T 2uv8_G 723 HPNFPIALQWTGGRGGGHHS------------------FE---------DAHTPMLQMYSKIRRHPNIMLI--FGSGFGS 773 (2051)
T ss_dssp STTSCEEEEECCSSCSEECC------------------SC---------CSSHHHHHHHHHHTTCTTBCCE--EESSCCS
T ss_pred CCCceeEEEEEccCcCCCCC------------------cc---------cccccHHHHHHHHHhcCCceEE--EeCCCCC
Confidence 99983 445655555521 00 01 1235678899998999998 8899999
Q ss_pred HHHHHHHH-----------HcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 235 PADAAMMM-----------QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 235 ~~d~~~~l-----------~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
++++..++ .+|||||.+||.|+-++.. .+..++++++-+
T Consensus 774 g~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~Ea-~~~~~~K~~iv~ 823 (2051)
T 2uv8_G 774 ADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEV-KTSPDAKKCIAA 823 (2051)
T ss_dssp HHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTTS-CCCHHHHHHHHT
T ss_pred HHHHHHHHccccccccCccCCCCceeeechHHHhCccc-ccCHHHHHHHHh
Confidence 99999999 8999999999999987643 233445555544
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=98.84 E-value=3.6e-08 Score=90.15 Aligned_cols=150 Identities=19% Similarity=0.164 Sum_probs=99.0
Q ss_pred cCcceeeccccC-----------cHHHHHHHHHcCCCEEE--eCCC-CC----chhHHHHHHh-cCCCCcEEEec-----
Q 021609 91 VTIPVMAKARIG-----------HFVEAQILEAIGIDYVD--ESEV-LT----PADEENHINK-HNFRIPFVCGC----- 146 (310)
Q Consensus 91 ~~iPv~vk~~~~-----------~~~~a~~~~~aGad~Vi--~~~~-~~----~~~~~~~i~~-~~~~i~~~v~~----- 146 (310)
.++|++++..-+ ....++.+.+.|||.|. +... .. ..++.+..+. +..++++++..
T Consensus 104 ~~~~lil~l~~~t~~~~~~~~~~l~~~ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~ 183 (295)
T 3glc_A 104 TNRPVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKD 183 (295)
T ss_dssp GCCCEEEECEECCCTTSCTTCCEECSCHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEECC---
T ss_pred CCccEEEEEcCCCcCCCCCccchhHHHHHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCc
Confidence 378888864221 01357889999999994 2211 11 2223333333 34567777632
Q ss_pred --CCHH----HHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC
Q 021609 147 --RNLG----EALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG 220 (310)
Q Consensus 147 --~t~~----ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~ 220 (310)
.+.+ .++.+.++|+|+|++. + ++. .++++.+..
T Consensus 184 ~~~d~e~i~~aariA~elGAD~VKt~-~--t~e--------------------------------------~~~~vv~~~ 222 (295)
T 3glc_A 184 MVRDQRYFSLATRIAAEMGAQIIKTY-Y--VEK--------------------------------------GFERIVAGC 222 (295)
T ss_dssp -CCSHHHHHHHHHHHHHTTCSEEEEE-C--CTT--------------------------------------THHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHhCCCEEEeC-C--CHH--------------------------------------HHHHHHHhC
Confidence 1222 3444668899999975 2 111 123455456
Q ss_pred CCCEEEeCCCCCCCH-----HHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhh
Q 021609 221 RLPVVHFAAGGVATP-----ADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAE 283 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~-----~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~ 283 (310)
++||+ ++||++.. +.+..++++||+|+++||.|++++||..+++.+...+++....+...+
T Consensus 223 ~vPVv--~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp~~~~~al~~ivh~~~s~~eA~~ 288 (295)
T 3glc_A 223 PVPIV--IAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVVHHNETADRAYE 288 (295)
T ss_dssp SSCEE--EECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCcEE--EEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcCHHHHHHHHHHHHhCCCCHHHHHH
Confidence 78998 67999743 356677789999999999999999999999999999998887665443
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-08 Score=88.37 Aligned_cols=191 Identities=13% Similarity=0.099 Sum_probs=115.4
Q ss_pred ccCCCHHHHHHH-HHcC--CcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC--cHHHHHHHHH
Q 021609 40 MDVVTPEQARVA-EEAG--ACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG--HFVEAQILEA 112 (310)
Q Consensus 40 ~~~~~~~~A~~~-~~~G--a~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~--~~~~a~~~~~ 112 (310)
.|+.+.+.+..+ .+.| ++++ .+. +. ...+| ++.++++++.+ +.++.+...+. ....++.+.+
T Consensus 12 lD~~~~~~a~~~~~~~~~~~~~i-kvg~~l---f~~~G-------~~~v~~l~~~~p~~~iflDlKl~Dip~t~~~~~~~ 80 (221)
T 3exr_A 12 LDHSNLKGAITAAVSVGNEVDVI-EAGTVC---LLQVG-------SELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAV 80 (221)
T ss_dssp ECCSSHHHHHHHHHHHGGGCSEE-EECHHH---HHHHC-------THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHhhCCCceEE-EECHHH---HHhcC-------HHHHHHHHHhCCCCcEEEEEEeeccHHHHHHHHHH
Confidence 355666555544 4444 6665 331 11 12233 67889998765 66666643332 2234566888
Q ss_pred cCCCEEEeCCCCC---chhHHHHHHhcC-CCCcEEEecCC---HHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhc
Q 021609 113 IGIDYVDESEVLT---PADEENHINKHN-FRIPFVCGCRN---LGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVM 185 (310)
Q Consensus 113 aGad~Vi~~~~~~---~~~~~~~i~~~~-~~i~~~v~~~t---~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~ 185 (310)
+|+|.+..+.... .....+.+++.+ ....+.+++.+ .+++....+.|++.+.++-.....
T Consensus 81 ~Gad~vtVH~~~g~~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~~~~~~~~~~~~v~~~a~~~~------------- 147 (221)
T 3exr_A 81 RGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDAL------------- 147 (221)
T ss_dssp TTCSEEEEETTSCHHHHHHHHHHHHHHCTTTCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCHHHH-------------
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHhcCCCcceEEEEEcCCCCHHHHHHHHcCCHHHHHHHHHHhcC-------------
Confidence 9999985332222 334455555443 22556666543 566666667799887775321000
Q ss_pred cceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 021609 186 GDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263 (310)
Q Consensus 186 ~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~ 263 (310)
.+ +...+...++.+++. .++++. ..||| +++++..+..+|||.+++||+|++++||..
T Consensus 148 ----------~~-------Gvv~s~~e~~~ir~~~~~~~~i~--v~gGI-~~~~~~~~~~aGad~~VvG~~I~~a~dp~~ 207 (221)
T 3exr_A 148 ----------LA-------GETWGEKDLNKVKKLIEMGFRVS--VTGGL-SVDTLKLFEGVDVFTFIAGRGITEAKNPAG 207 (221)
T ss_dssp ----------HH-------TCCCCHHHHHHHHHHHHHTCEEE--EESSC-CGGGGGGGTTCCCSEEEECHHHHTSSSHHH
T ss_pred ----------CC-------ccccCHHHHHHHHHhhcCCceEE--EECCC-CHHHHHHHHHCCCCEEEECchhhCCCCHHH
Confidence 00 111122223344332 256666 46999 699999989999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 021609 264 RAQAIVRAVTH 274 (310)
Q Consensus 264 ~a~~l~~~i~~ 274 (310)
.++++++.+++
T Consensus 208 a~~~~~~~~~~ 218 (221)
T 3exr_A 208 AARAFKDEIKR 218 (221)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887754
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.6e-08 Score=91.74 Aligned_cols=152 Identities=20% Similarity=0.238 Sum_probs=96.1
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCC--CC-CHHHHHHHHhhc--CcceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVAR--MS-DPQLIKEIKQSV--TIPVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~--~~-~~~~i~~i~~~~--~iPv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| +|+ |. +...+.+||+-. .+ ..+.++.+++++ +.||.++.....+.
T Consensus 156 ~aA~~a~~aGfDgV-Eih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~-- 232 (349)
T 3hgj_A 156 EGARRALRAGFQVI-ELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWG-- 232 (349)
T ss_dssp HHHHHHHHTTCCEE-EEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCS--
T ss_pred HHHHHHHHcCCCEE-EECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEecccccc--
Confidence 36788899999997 665 21 233445566521 11 135677778887 78999887643110
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
....+..+.. +-++.+.+.|+|+|.++........
T Consensus 233 -------------~~g~~~~~~~-------------------~la~~L~~~Gvd~i~vs~g~~~~~~------------- 267 (349)
T 3hgj_A 233 -------------EGGWSLEDTL-------------------AFARRLKELGVDLLDCSSGGVVLRV------------- 267 (349)
T ss_dssp -------------TTSCCHHHHH-------------------HHHHHHHHTTCCEEEEECCCSCSSS-------------
T ss_pred -------------CCCCCHHHHH-------------------HHHHHHHHcCCCEEEEecCCcCccc-------------
Confidence 0011111211 2245566789999988742211100
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..+ . .....+++++.+++..++||+ +.|||.+++++.++++.| ||.|++||+++. ||.
T Consensus 268 --~~~--~---------~~~~~~~~~~~ir~~~~iPVi--~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~la--nPd 326 (349)
T 3hgj_A 268 --RIP--L---------APGFQVPFADAVRKRVGLRTG--AVGLITTPEQAETLLQAGSADLVLLGRVLLR--DPY 326 (349)
T ss_dssp --CCC--C---------CTTTTHHHHHHHHHHHCCEEE--ECSSCCCHHHHHHHHHTTSCSEEEESTHHHH--CTT
T ss_pred --ccC--C---------CccccHHHHHHHHHHcCceEE--EECCCCCHHHHHHHHHCCCceEEEecHHHHh--Cch
Confidence 000 0 112346778888887789998 789999999999999998 999999999998 554
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-08 Score=86.74 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=44.4
Q ss_pred CcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 208 APYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 208 ~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
.+.++++++++.. ++|++ .+|||++++++.++.+ |||+|+|||+|++ ||.
T Consensus 172 g~~~~v~~ir~~~~~~pv~--vGfGI~~~e~a~~~~~-gAD~VVVGSai~~--~~~ 222 (235)
T 3w01_A 172 GDVSKVQAVSEHLTETQLF--YGGGISSEQQATEMAA-IADTIIVGDIIYK--DIK 222 (235)
T ss_dssp CCHHHHHHHHTTCSSSEEE--EESCCCSHHHHHHHHT-TSSEEEECTHHHH--CHH
T ss_pred CCHHHHHHHHHhcCCCCEE--EECCcCCHHHHHHHHc-CCCEEEECCceec--CHH
Confidence 3578899999887 89998 6899999999999877 9999999999998 765
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.7e-08 Score=95.08 Aligned_cols=128 Identities=18% Similarity=0.228 Sum_probs=87.0
Q ss_pred HHHHHHHHHcCCCEEEe--CCCCC--chhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHH
Q 021609 104 FVEAQILEAIGIDYVDE--SEVLT--PADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~--~~~~~--~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
.+.++.+.++|+|.+.. ..... ..+..+.+++..+++++++ .+.+.++++++.+.|+|+|.+.+..++.. ..
T Consensus 239 ~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~--~~- 315 (494)
T 1vrd_A 239 MERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSIC--TT- 315 (494)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTC--HH-
T ss_pred HHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCccc--cc-
Confidence 46778899999999963 22222 3345555555433666654 48899999999999999999854433211 00
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai 255 (310)
+. +.. -..+....+..+.+ ..++||+ ++|||+++.|+.+++.+|||+|++|+++
T Consensus 316 ---~~-------~~~-----------~g~p~~~~l~~v~~~~~~~~ipvi--a~GGI~~~~di~kala~GAd~V~iGr~~ 372 (494)
T 1vrd_A 316 ---RV-------VAG-----------VGVPQLTAVMECSEVARKYDVPII--ADGGIRYSGDIVKALAAGAESVMVGSIF 372 (494)
T ss_dssp ---HH-------HHC-----------CCCCHHHHHHHHHHHHHTTTCCEE--EESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred ---cc-------cCC-----------CCccHHHHHHHHHHHHhhcCCCEE--EECCcCCHHHHHHHHHcCCCEEEECHHH
Confidence 00 000 01233444444433 2589998 7899999999999999999999999999
Q ss_pred cc
Q 021609 256 FK 257 (310)
Q Consensus 256 ~~ 257 (310)
+.
T Consensus 373 l~ 374 (494)
T 1vrd_A 373 AG 374 (494)
T ss_dssp HT
T ss_pred hc
Confidence 74
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-07 Score=89.73 Aligned_cols=147 Identities=13% Similarity=0.080 Sum_probs=93.6
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCC--CC-CHHHHHHHHhhcCc-ceeeccccC-cHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVAR--MS-DPQLIKEIKQSVTI-PVMAKARIG-HFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~--~~-~~~~i~~i~~~~~i-Pv~vk~~~~-~~~~a 107 (310)
+.|+.+.++|+|+| +|+ |. +.....++|+.. .+ ..+.++.+++.++- ||.+|.... ++.
T Consensus 165 ~aA~~a~~aGfDgV-eih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~-- 241 (365)
T 2gou_A 165 QAALNAMEAGFDGI-ELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLN-- 241 (365)
T ss_dssp HHHHHHHHTTCSEE-EEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTT--
T ss_pred HHHHHHHHcCCCEE-EEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccC--
Confidence 45777889999997 665 11 223344555521 11 12557777877642 999987653 110
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
|. .+..+..+.. +-++.+.+.|+|+|.++++...+.
T Consensus 242 ------~~-----~~~~~~~~~~-------------------~~a~~l~~~G~d~i~v~~~~~~~~-------------- 277 (365)
T 2gou_A 242 ------GT-----VDADPILTYT-------------------AAAALLNKHRIVYLHIAEVDWDDA-------------- 277 (365)
T ss_dssp ------SC-----CCSSHHHHHH-------------------HHHHHHHHTTCSEEEEECCBTTBC--------------
T ss_pred ------CC-----CCCCCHHHHH-------------------HHHHHHHHcCCCEEEEeCCCcCCC--------------
Confidence 00 0000011111 125556678999999886532110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
...++++++.+++..++||+ +.||| +++++.++++.| ||+|++||+++. ||.
T Consensus 278 ------------------~~~~~~~~~~i~~~~~iPvi--~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~--~P~ 330 (365)
T 2gou_A 278 ------------------PDTPVSFKRALREAYQGVLI--YAGRY-NAEKAEQAINDGLADMIGFGRPFIA--NPD 330 (365)
T ss_dssp ------------------CCCCHHHHHHHHHHCCSEEE--EESSC-CHHHHHHHHHTTSCSEEECCHHHHH--CTT
T ss_pred ------------------CCccHHHHHHHHHHCCCcEE--EeCCC-CHHHHHHHHHCCCcceehhcHHHHh--Cch
Confidence 11245678888888899998 67999 899999999988 999999999998 565
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=5.2e-08 Score=85.12 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=95.8
Q ss_pred HHHHHHHHhhc-Ccceee--ccccCcHHHHHHHHHcCCCEEEeCCCCC---chhHHHHHHhcCCCCcEEE----ecCCHH
Q 021609 81 PQLIKEIKQSV-TIPVMA--KARIGHFVEAQILEAIGIDYVDESEVLT---PADEENHINKHNFRIPFVC----GCRNLG 150 (310)
Q Consensus 81 ~~~i~~i~~~~-~iPv~v--k~~~~~~~~a~~~~~aGad~Vi~~~~~~---~~~~~~~i~~~~~~i~~~v----~~~t~~ 150 (310)
++.++.+++.+ +.++.. |..-.....++.+.++|||.+..+.... ...+.+.+++ .+...++ ..+ ..
T Consensus 44 ~~~i~~l~~~~p~~~v~lD~kl~dip~t~~~~~~~~Gad~itvh~~~g~~~l~~~~~~~~~--~g~~~~~~ll~~~t-~~ 120 (216)
T 1q6o_A 44 VRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKE--FNGDVQIELTGYWT-WE 120 (216)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHH--TTCEEEEEECSCCC-HH
T ss_pred HHHHHHHHHhCCCCeEEEEEEecccHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHH--cCCCceeeeeeCCC-hh
Confidence 67888888874 344444 4331222345678889999996332222 2344444443 3444333 222 44
Q ss_pred HHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeC
Q 021609 151 EALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFA 228 (310)
Q Consensus 151 ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA 228 (310)
....+.+.|.+.+.++-... ++ ..+.....+.++.+++.. ++|++ +
T Consensus 121 ~~~~l~~~~~~~~vl~~a~~------~~------------------------~~G~~g~~~~i~~lr~~~~~~~~i~--v 168 (216)
T 1q6o_A 121 QAQQWRDAGIGQVVYHRSRD------AQ------------------------AAGVAWGEADITAIKRLSDMGFKVT--V 168 (216)
T ss_dssp HHHHHHHTTCCEEEEECCHH------HH------------------------HTTCCCCHHHHHHHHHHHHTTCEEE--E
T ss_pred hHHHHHhcCcHHHHHHHHHH------HH------------------------hcCCCCCHHHHHHHHHhcCCCCcEE--E
Confidence 55555566776665542100 00 001111123344444332 57787 4
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
.|||+ ++++.+++++|||++++||+|++++||...+++|.+.+++
T Consensus 169 ~GGI~-~~~~~~~~~aGad~ivvG~~I~~a~dp~~~~~~~~~~i~~ 213 (216)
T 1q6o_A 169 TGGLA-LEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE 213 (216)
T ss_dssp ESSCC-GGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ECCcC-hhhHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHHHHHh
Confidence 69995 9999999999999999999999999999999999887754
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=8.6e-08 Score=88.20 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=88.6
Q ss_pred HHHHHHHHcCCCEEE--e--CCCC-C---chhHHHHHHh-cCCCCcEEEec--------------CCHHH-HHHHHHhCC
Q 021609 105 VEAQILEAIGIDYVD--E--SEVL-T---PADEENHINK-HNFRIPFVCGC--------------RNLGE-ALRRIREGA 160 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi--~--~~~~-~---~~~~~~~i~~-~~~~i~~~v~~--------------~t~~e-a~~~~~~Ga 160 (310)
..++.+.+.|||+|- . .... + ...+.+..+. +..++++++.+ ++..+ ++.+.++|+
T Consensus 112 ~~ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGa 191 (304)
T 1to3_A 112 INAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGA 191 (304)
T ss_dssp CCHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSC
T ss_pred hhHHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCC
Confidence 567889999999993 1 1211 1 1223333333 34677766654 11344 445567899
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh----cCCCC-EEEeCCCCCCCH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ----LGRLP-VVHFAAGGVATP 235 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~----~~~iP-Vi~iA~GGI~t~ 235 (310)
|+++++.... + ..+++.+.++.+ .+.+| |+ .+||+ +.
T Consensus 192 D~iKv~~~~~-~----------------------------------~g~~~~~~~vv~~~~~~~~~P~Vv--~aGG~-~~ 233 (304)
T 1to3_A 192 DLYKVEMPLY-G----------------------------------KGARSDLLTASQRLNGHINMPWVI--LSSGV-DE 233 (304)
T ss_dssp SEEEECCGGG-G----------------------------------CSCHHHHHHHHHHHHHTCCSCEEE--CCTTS-CT
T ss_pred CEEEeCCCcC-C----------------------------------CCCHHHHHHHHHhccccCCCCeEE--EecCC-CH
Confidence 9999875311 0 001222222322 26789 77 68999 56
Q ss_pred ----HHHHHHHHcCCCEEEEccccccC----CCHHHHH--------HHHHHHHhccCChh
Q 021609 236 ----ADAAMMMQLGCDGVFVGSGVFKS----GDPVKRA--------QAIVRAVTHYSDPE 279 (310)
Q Consensus 236 ----~d~~~~l~~GadgV~VGsai~~a----~dp~~~a--------~~l~~~i~~~~~~~ 279 (310)
+.+..+++.|++|++|||+|+++ +||...+ ++|.+.+++...++
T Consensus 234 ~~~~~~~~~a~~aGa~Gv~vGRaI~q~~~~~~dp~~~~~~~~~~~~~~l~~iv~~~~~~~ 293 (304)
T 1to3_A 234 KLFPRAVRVAMEAGASGFLAGRAVWSSVIGLPDTELMLRDVSAPKLQRLGEIVDEMMGKR 293 (304)
T ss_dssp TTHHHHHHHHHHTTCCEEEESHHHHGGGTTCSCHHHHHHHTHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCeEEEEehHHhCccccCCCHHHHHHhhchHHHHHHHHHHhcCCChh
Confidence 45888889999999999999999 9999999 88888887654433
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=98.70 E-value=1.4e-07 Score=88.88 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=94.1
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCC--CC-CHHHHHHHHhhcC-cceeeccccCc-HHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVAR--MS-DPQLIKEIKQSVT-IPVMAKARIGH-FVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~--~~-~~~~i~~i~~~~~-iPv~vk~~~~~-~~~a 107 (310)
+.|+.+.++|+|+| +|+ |. ++..+.+||+.. .+ ..+.++.++++++ -||.+|..... +..
T Consensus 165 ~aA~~a~~aGfDgV-eih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~- 242 (364)
T 1vyr_A 165 QAVANAREAGFDLV-ELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQN- 242 (364)
T ss_dssp HHHHHHHHTTCSEE-EEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTT-
T ss_pred HHHHHHHHcCCCEE-EEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEcccccccc-
Confidence 46777889999997 664 11 233344556521 11 1345777788773 39999876541 100
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
.| ....+..+.. +-++++.+.|+|+|.++++...+.
T Consensus 243 -----~~------~~~~~~~~~~-------------------~~a~~l~~~G~d~i~v~~~~~~~~-------------- 278 (364)
T 1vyr_A 243 -----VD------NGPNEEADAL-------------------YLIEELAKRGIAYLHMSETDLAGG-------------- 278 (364)
T ss_dssp -----BC------CCTTHHHHHH-------------------HHHHHHHHTTCSEEEEECCBTTBC--------------
T ss_pred -----cc------CCCCCHHHHH-------------------HHHHHHHHhCCCEEEEecCcccCC--------------
Confidence 00 0000011111 125556788999999886432110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
...++++++.+++..++||+ +.||| +++++.++++.| ||+|++||+++. ||.
T Consensus 279 ------------------~~~~~~~~~~v~~~~~iPvi--~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~--~P~ 331 (364)
T 1vyr_A 279 ------------------KPYSEAFRQKVRERFHGVII--GAGAY-TAEKAEDLIGKGLIDAVAFGRDYIA--NPD 331 (364)
T ss_dssp ------------------CCCCHHHHHHHHHHCCSEEE--EESSC-CHHHHHHHHHTTSCSEEEESHHHHH--CTT
T ss_pred ------------------CcccHHHHHHHHHHCCCCEE--EECCc-CHHHHHHHHHCCCccEEEECHHHHh--Chh
Confidence 11246678888888899998 67999 899999999988 999999999998 565
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-06 Score=85.53 Aligned_cols=181 Identities=15% Similarity=0.159 Sum_probs=107.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHh-----hcCcceeecccc----CcHHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQ-----SVTIPVMAKARI----GHFVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~-----~~~iPv~vk~~~----~~~~~a~~~~~aGad 116 (310)
+.++.+.+.+...+..++.. ...-|. ....+.++.+.+ ....++.+...+ ...+.++.+.++|+|
T Consensus 174 ~a~~~m~~~~~~~lpVVd~~----g~lvGi--vt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~G~d 247 (491)
T 1zfj_A 174 TAERILHEHRIEKLPLVDNS----GRLSGL--ITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAGAD 247 (491)
T ss_dssp HHHHHHHHTTCSEEEEECTT----SBEEEE--EEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEEEcCC----CcEEEE--EEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHHcCCC
Confidence 67778888988877444210 000111 112345555442 011122222111 235778899999999
Q ss_pred EEEeCCC-CCch---hHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEee
Q 021609 117 YVDESEV-LTPA---DEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 117 ~Vi~~~~-~~~~---~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
.++.... -... +..+.+++..++++++. .+.+.+.+.++.++|+|.|.+....+ .++.. + .+
T Consensus 248 ~ivi~~a~g~~~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg~g~g--~~~~t----r-------~~ 314 (491)
T 1zfj_A 248 AIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPG--SICTT----R-------VV 314 (491)
T ss_dssp EEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCC--TTBCH----H-------HH
T ss_pred eEEEeeecCcchhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEECccCC--cceEE----e-------ee
Confidence 9963221 1222 33444444323666555 47889999999999999998852221 11100 0 00
Q ss_pred cccChhHHHHhhhccCCcHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.. -..+..+.++++.. ..++||+ ++|||+++.|+.+++.+|||+|++|++|+.+
T Consensus 315 ~~-----------~~~p~~~~l~~~~~~~~~~~ipvi--a~GGi~~~~di~kal~~GA~~v~vG~~~~~~ 371 (491)
T 1zfj_A 315 AG-----------VGVPQVTAIYDAAAVAREYGKTII--ADGGIKYSGDIVKALAAGGNAVMLGSMFAGT 371 (491)
T ss_dssp TC-----------CCCCHHHHHHHHHHHHHHTTCEEE--EESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred cC-----------CCCCcHHHHHHHHHHHhhcCCCEE--eeCCCCCHHHHHHHHHcCCcceeeCHHhhCC
Confidence 00 01333555555543 3579998 8999999999999999999999999999863
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.8e-07 Score=81.26 Aligned_cols=179 Identities=17% Similarity=0.208 Sum_probs=101.2
Q ss_pred cCCCHH-HHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee--ccc--cC-cHHHHHHHHHc
Q 021609 41 DVVTPE-QARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA--KAR--IG-HFVEAQILEAI 113 (310)
Q Consensus 41 ~~~~~~-~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v--k~~--~~-~~~~a~~~~~a 113 (310)
+..+.+ ..+.+.+.|++++ +++. ..-...+| ++.++++++.++.++.. |.. .. ....++.+.++
T Consensus 7 D~~~l~~~~~~~~~~~~~~~~~kv~--~~~f~~~G-------~~~i~~lr~~~~~~v~~D~kl~DI~~t~~~~v~~~~~~ 77 (208)
T 2czd_A 7 DVYEGERAIKIAKSVKDYISMIKVN--WPLILGSG-------VDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGA 77 (208)
T ss_dssp CCCSHHHHHHHHHHHGGGCSEEEEE--HHHHHHHC-------TTHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhcccccEEEec--HHHHHhhC-------HHHHHHHHHcCCCEEEEEeeeCchHHHHHHHHHHHHhc
Confidence 344554 3444566777654 2331 11112233 56888888774444444 432 22 13445778889
Q ss_pred CCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHH----------H-HHHHHHhCCCEEEEcCCCCCcchHHHHHHHH
Q 021609 114 GIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLG----------E-ALRRIREGAAMIRTKGEAGTGNIIEAVRHVR 182 (310)
Q Consensus 114 Gad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~----------e-a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r 182 (310)
|||.+..+.... .+..+.+++.+ ++.+.++..+.. . +..+.+.|++.+.+.+..
T Consensus 78 Gad~vtvh~~~g-~~~i~~~~~~~-gv~vl~~t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~~------------- 142 (208)
T 2czd_A 78 GADYVIVHTFVG-RDSVMAVKELG-EIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTR------------- 142 (208)
T ss_dssp TCSEEEEESTTC-HHHHHHHHTTS-EEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSS-------------
T ss_pred CCCEEEEeccCC-HHHHHHHHHhC-CcEEEEecCCcchhhHHHHHHHHHHHHHHHhCCcEEEECCCC-------------
Confidence 999995332222 22344444433 555444432211 0 223445666666543210
Q ss_pred hhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHH--HHHHHHHcCCCEEEEccccccCC
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPA--DAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~--d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+.++.+++..+ -+++ ..|||+ ++ ++.+++++|+|++++||+|++++
T Consensus 143 ---------------------------~~~i~~lr~~~~~~~~i--v~gGI~-~~g~~~~~~~~aGad~vvvGr~I~~a~ 192 (208)
T 2czd_A 143 ---------------------------PERIGYIRDRLKEGIKI--LAPGIG-AQGGKAKDAVKAGADYIIVGRAIYNAP 192 (208)
T ss_dssp ---------------------------THHHHHHHHHSCTTCEE--EECCCC-SSTTHHHHHHHHTCSEEEECHHHHTSS
T ss_pred ---------------------------hHHHHHHHHhCCCCeEE--EECCCC-CCCCCHHHHHHcCCCEEEEChHHhcCC
Confidence 112233333322 2455 469996 44 88899999999999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 021609 260 DPVKRAQAIVRAVT 273 (310)
Q Consensus 260 dp~~~a~~l~~~i~ 273 (310)
||...++++++.++
T Consensus 193 dp~~~~~~l~~~i~ 206 (208)
T 2czd_A 193 NPREAAKAIYDEIR 206 (208)
T ss_dssp SHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHh
Confidence 99999998887664
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=3.4e-07 Score=86.25 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCC--CC-CHHHHHHHHhhc--CcceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSV--TIPVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~--~iPv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| +|+ | .+.....+||+-. .+ ..+.++.+++++ +.||.++.....+..
T Consensus 162 ~aA~~a~~aGfDgV-Eih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~- 239 (363)
T 3l5l_A 162 DAARRARDAGFEWI-ELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDG- 239 (363)
T ss_dssp HHHHHHHHHTCSEE-EEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSS-
T ss_pred HHHHHHHHcCCCEE-EEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCC-
Confidence 35788899999997 664 2 1334445566521 01 135667778777 578888876431100
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
.. ..+..+. .+-++.+.+.|+|+|.+++....+..
T Consensus 240 --------------~G--~~~~~~~----------------~~la~~L~~~Gvd~i~vs~g~~~~~~------------- 274 (363)
T 3l5l_A 240 --------------RD--EQTLEES----------------IELARRFKAGGLDLLSVSVGFTIPDT------------- 274 (363)
T ss_dssp --------------CH--HHHHHHH----------------HHHHHHHHHTTCCEEEEEECCCSSCC-------------
T ss_pred --------------CC--CCCHHHH----------------HHHHHHHHHcCCCEEEEecCcccccc-------------
Confidence 00 0000011 12245566789999988753221100
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..+ . .....+++++.+++..++||+ +.|||.+++++.++++.| ||.|++||+++. ||.
T Consensus 275 --~~~--~---------~~~~~~~~~~~ir~~~~iPVi--~~GgI~s~e~a~~~l~~G~aD~V~iGR~~la--nPd 333 (363)
T 3l5l_A 275 --NIP--W---------GPAFMGPIAERVRREAKLPVT--SAWGFGTPQLAEAALQANQLDLVSVGRAHLA--DPH 333 (363)
T ss_dssp --CCC--C---------CTTTTHHHHHHHHHHHTCCEE--ECSSTTSHHHHHHHHHTTSCSEEECCHHHHH--CTT
T ss_pred --ccC--C---------CcchhHHHHHHHHHHcCCcEE--EeCCCCCHHHHHHHHHCCCccEEEecHHHHh--Cch
Confidence 000 0 012246677888887789998 789999999999999998 999999999998 554
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-07 Score=88.94 Aligned_cols=148 Identities=17% Similarity=0.093 Sum_probs=92.9
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCCCC----CHHHHHHHHhhcCc-ceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVARMS----DPQLIKEIKQSVTI-PVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~~~----~~~~i~~i~~~~~i-Pv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| +|+ |. +...+.+||+ ... ..+.++.++++++- ||.++.....+..
T Consensus 170 ~aA~~a~~aGfDgV-EIh~a~GYLl~QFlsp~~N~R~D~yGGs-lenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~- 246 (377)
T 2r14_A 170 QAAQRAKRAGFDMV-EVHAANACLPNQFLATGTNRRTDQYGGS-IENRARFPLEVVDAVAEVFGPERVGIRLTPFLELF- 246 (377)
T ss_dssp HHHHHHHHHTCSEE-EEEECTTCHHHHHHSTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCT-
T ss_pred HHHHHHHHcCCCEE-EEcCcccchHHhccCCccccCCCccCcc-hhhchHHHHHHHHHHHHHcCCCcEEEEeccccccC-
Confidence 46778889999997 665 21 2334445665 221 13456677777742 9999876431000
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
|. ....+..+.. +-++++.+.|+|+|.++++.....
T Consensus 247 ------~~-----~~~~~~~~~~-------------------~la~~le~~Gvd~i~v~~~~~~~~-------------- 282 (377)
T 2r14_A 247 ------GL-----TDDEPEAMAF-------------------YLAGELDRRGLAYLHFNEPDWIGG-------------- 282 (377)
T ss_dssp ------TC-----CCSCHHHHHH-------------------HHHHHHHHTTCSEEEEECCC------------------
T ss_pred ------CC-----CCCCCHHHHH-------------------HHHHHHHHcCCCEEEEeCCcccCC--------------
Confidence 00 0000011111 225556678999999987532110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
....++++++.+++..++||+ ++||| +++++.++++.| ||+|++||+++. ||.
T Consensus 283 -----------------~~~~~~~~~~~ik~~~~iPvi--~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~--~P~ 336 (377)
T 2r14_A 283 -----------------DITYPEGFREQMRQRFKGGLI--YCGNY-DAGRAQARLDDNTADAVAFGRPFIA--NPD 336 (377)
T ss_dssp -------------------CCCTTHHHHHHHHCCSEEE--EESSC-CHHHHHHHHHTTSCSEEEESHHHHH--CTT
T ss_pred -----------------CCcchHHHHHHHHHHCCCCEE--EECCC-CHHHHHHHHHCCCceEEeecHHHHh--Cch
Confidence 001145677888888899998 67999 699999999987 999999999998 565
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-07 Score=88.14 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCC--CC-CHHHHHHHHhhc--CcceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVAR--MS-DPQLIKEIKQSV--TIPVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~--~~-~~~~i~~i~~~~--~iPv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| +|+ |. +...+.+||+-. .+ ..+.++.+++++ +.||.++.....+..
T Consensus 147 ~AA~~a~~aGfDgV-Eih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~- 224 (343)
T 3kru_A 147 EAAKRANLAGYDVV-EIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYME- 224 (343)
T ss_dssp HHHHHHHHHTCSEE-EEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSST-
T ss_pred HHHhhccccCCceE-EEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhc-
Confidence 45788889999997 554 32 334455566531 11 136777788887 689999876532110
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhcc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~ 186 (310)
...+..+..++ ++.+.+. +|++.+. |......
T Consensus 225 --------------~g~~~~~~~~~-------------------a~~l~~~-vd~i~vs~g~~~~~~------------- 257 (343)
T 3kru_A 225 --------------GGINIDMMVEY-------------------INMIKDK-VDLIDVSSGGLLNVD------------- 257 (343)
T ss_dssp --------------TSCCHHHHHHH-------------------HHHHTTT-CSEEEEECCCSSCCC-------------
T ss_pred --------------cCccHHHHHHH-------------------HHHhhcc-ccEEeccCCceEeee-------------
Confidence 01112222222 3344566 8888874 3321100
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
.. ......+++++.+++..++||+ +.|||.+++++.++++.| ||.|++|++++. ||.
T Consensus 258 -------~~--------~~~~~~~~~~~~ir~~~~iPVi--~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~la--nPd 315 (343)
T 3kru_A 258 -------IN--------LYPGYQVKYAETIKKRCNIKTS--AVGLITTQELAEEILSNERADLVALGRELLR--NPY 315 (343)
T ss_dssp -------CC--------CCTTTTHHHHHHHHHHHTCEEE--EESSCCCHHHHHHHHHTTSCSEEEESHHHHH--CTT
T ss_pred -------ec--------ccCceeehHHHHHHHhcCcccc--eeeeeeHHHHHHHHHhchhhHHHHHHHHHhc--CCe
Confidence 00 0012346778888887889998 789999999999999988 999999999998 665
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.6e-08 Score=92.30 Aligned_cols=155 Identities=12% Similarity=0.030 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCCC---C-CHHHHHHHHhhc------CcceeeccccC
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVARM---S-DPQLIKEIKQSV------TIPVMAKARIG 102 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~~---~-~~~~i~~i~~~~------~iPv~vk~~~~ 102 (310)
+.|+.+.++|+|+| +|+ | .+...+.+||+.+. + ..+.++++++++ +.||.++....
T Consensus 174 ~AA~rA~~AGfDgV-EIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~ 252 (419)
T 3l5a_A 174 DATLRAIKAGFDGV-EISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPE 252 (419)
T ss_dssp HHHHHHHHTTCSEE-EEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSC
T ss_pred HHHHHHHHcCCCEE-EECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccc
Confidence 46888899999997 664 2 24455666777411 1 235666777765 67888876543
Q ss_pred cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHH-hCCCEEEEcCCCCCcchHHHHHHH
Q 021609 103 HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIR-EGAAMIRTKGEAGTGNIIEAVRHV 181 (310)
Q Consensus 103 ~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~-~Gad~V~v~g~~~~~~~~~~~~~~ 181 (310)
.+.. |. ...+..+.. +-+..+.+ .|+|+|.++++.....
T Consensus 253 ~~~~-------~~------~G~~~ed~~-------------------~la~~L~~~~Gvd~I~vs~g~~~~~-------- 292 (419)
T 3l5a_A 253 ETRG-------SD------LGYTIDEFN-------------------QLIDWVMDVSNIQYLAIASWGRHIY-------- 292 (419)
T ss_dssp EEET-------TE------EEECHHHHH-------------------HHHHHHHHHSCCCCEEECCTTCCGG--------
T ss_pred cccC-------CC------CCCCHHHHH-------------------HHHHHHHhhcCCcEEEEeeCCcccc--------
Confidence 1100 00 001111111 22445667 8999999887542100
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.... .. ......+++++.+++.. ++||+ +.|||.+++++.++++. ||.|++|++++.
T Consensus 293 --------~~~~-~~-------~g~~~~~~~a~~Ik~~v~~~iPVI--~~GgI~t~e~Ae~~L~~-aDlVaiGR~~Ia-- 351 (419)
T 3l5a_A 293 --------QNTS-RT-------PGDHFGRPVNQIVYEHLAGRIPLI--ASGGINSPESALDALQH-ADMVGMSSPFVT-- 351 (419)
T ss_dssp --------GCBC-CC-------SSTTTTSBHHHHHHHHHTTSSCEE--ECSSCCSHHHHHHHGGG-CSEEEESTHHHH--
T ss_pred --------cccc-CC-------CCccccHHHHHHHHHHcCCCCeEE--EECCCCCHHHHHHHHHh-CCcHHHHHHHHH--
Confidence 0000 00 00111234556666654 69998 78999999999999988 999999999997
Q ss_pred CHH
Q 021609 260 DPV 262 (310)
Q Consensus 260 dp~ 262 (310)
||.
T Consensus 352 nPd 354 (419)
T 3l5a_A 352 EPD 354 (419)
T ss_dssp CTT
T ss_pred CcH
Confidence 665
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=5.4e-07 Score=85.98 Aligned_cols=156 Identities=13% Similarity=0.012 Sum_probs=95.3
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCC--CC-CHHHHHHHHhhcC-cceeeccccCcHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVAR--MS-DPQLIKEIKQSVT-IPVMAKARIGHFVEAQ 108 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~--~~-~~~~i~~i~~~~~-iPv~vk~~~~~~~~a~ 108 (310)
+.|+.+.++|+|+| +|+ |. +...+.+||+.. .+ ..+.++.++++++ -||.++.....+..
T Consensus 175 ~AA~~a~~AGfDgV-EIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~-- 251 (402)
T 2hsa_B 175 RSALNAIEAGFDGI-EIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHL-- 251 (402)
T ss_dssp HHHHHHHHTTCSEE-EEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCST--
T ss_pred HHHHHHHHcCCCEE-EECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccC--
Confidence 46788899999997 665 22 334455566621 11 2356677787774 49999876541100
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhC------CCEEEEcCCCCCcchHHHHHHHH
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREG------AAMIRTKGEAGTGNIIEAVRHVR 182 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~G------ad~V~v~g~~~~~~~~~~~~~~r 182 (310)
|.+ ...+..+.. +-++.+.+.| +|+|.++++......
T Consensus 252 -----g~~-----~~~~~~~~~-------------------~la~~le~~G~~gg~~vd~i~v~~~~~~~~~-------- 294 (402)
T 2hsa_B 252 -----DAM-----DSNPLSLGL-------------------AVVERLNKIQLHSGSKLAYLHVTQPRYVAYG-------- 294 (402)
T ss_dssp -----TCC-----CSCHHHHHH-------------------HHHHHHHHHHHHHTSCCSEEEEECCCCCTTT--------
T ss_pred -----CCC-----CCCCHHHHH-------------------HHHHHHHhcCCccCCceEEEEEecCcccccc--------
Confidence 000 000011111 2244556778 999998865321100
Q ss_pred hhccceEeec--ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCC
Q 021609 183 SVMGDIRVLR--NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSG 259 (310)
Q Consensus 183 ~~~~~~~~l~--~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~ 259 (310)
.-+ .++. ...++++++.+++..++||+ ++||| +++++.++++.| ||.|++|++++.
T Consensus 295 -------~~~~~~~~~---------~~~~~~~~~~vk~~~~iPvi--~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~-- 353 (402)
T 2hsa_B 295 -------QTEAGRLGS---------EEEEARLMRTLRNAYQGTFI--CSGGY-TRELGIEAVAQGDADLVSYGRLFIS-- 353 (402)
T ss_dssp -------TSSSTTTTH---------HHHHHHHHHHHHHHCSSCEE--EESSC-CHHHHHHHHHTTSCSEEEESHHHHH--
T ss_pred -------CCccccccC---------CcchHHHHHHHHHHCCCCEE--EeCCC-CHHHHHHHHHCCCCceeeecHHHHh--
Confidence 000 0000 00135677888888899998 68999 999999999887 999999999998
Q ss_pred CHH
Q 021609 260 DPV 262 (310)
Q Consensus 260 dp~ 262 (310)
||.
T Consensus 354 dP~ 356 (402)
T 2hsa_B 354 NPD 356 (402)
T ss_dssp CTT
T ss_pred Cch
Confidence 676
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.5e-06 Score=74.83 Aligned_cols=165 Identities=21% Similarity=0.258 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--C---c--------HHHHHH
Q 021609 43 VTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--G---H--------FVEAQI 109 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~---~--------~~~a~~ 109 (310)
.+++-+.+++++||++| +||.. -..+| +.+.+..++.+++.+++||-+..+. + + .++++.
T Consensus 47 ~s~~~a~~A~~gGAdRI-ELc~~----l~~GG--lTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~ 119 (287)
T 3iwp_A 47 DSVESAVNAERGGADRI-ELCSG----LSEGG--TTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRL 119 (287)
T ss_dssp SSHHHHHHHHHHTCSEE-EECBC----GGGTC--BCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCCEE-EECCC----CCCCC--CCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHH
Confidence 57799999999999997 88611 11122 2456789999999899999886554 2 1 257888
Q ss_pred HHHcCCCEEE-e---CCC-CCchhHHHHHHhcCCCCcEEE----e-cCCHHHHHH-HHHhCCCEEEEcCCCCCcchHHHH
Q 021609 110 LEAIGIDYVD-E---SEV-LTPADEENHINKHNFRIPFVC----G-CRNLGEALR-RIREGAAMIRTKGEAGTGNIIEAV 178 (310)
Q Consensus 110 ~~~aGad~Vi-~---~~~-~~~~~~~~~i~~~~~~i~~~v----~-~~t~~ea~~-~~~~Gad~V~v~g~~~~~~~~~~~ 178 (310)
+.++|||+|+ + .+. +......++++..+ ++.+.. | +.+..++.. +.++|++.|-++|...+
T Consensus 120 ~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~-~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTSG~~~~------- 191 (287)
T 3iwp_A 120 AKLYGADGLVFGALTEDGHIDKELCMSLMAICR-PLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSS------- 191 (287)
T ss_dssp HHHTTCSEEEECCBCTTSCBCHHHHHHHHHHHT-TSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECTTSSS-------
T ss_pred HHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHcC-CCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCCCCC-------
Confidence 9999999996 3 232 44455566665532 132221 1 335555555 55779998887663211
Q ss_pred HHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEc
Q 021609 179 RHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVG 252 (310)
Q Consensus 179 ~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VG 252 (310)
.....+.++++.+. .+++|+ +.||| +++++.++++ +|++.+-..
T Consensus 192 ---------------------------a~~Gl~~Lk~Lv~~a~~rI~Im--aGGGV-~~~Ni~~l~~~tG~~~~H~S 238 (287)
T 3iwp_A 192 ---------------------------ALEGLPLIKRLIEQAKGRIVVM--PGGGI-TDRNLQRILEGSGATEFHCS 238 (287)
T ss_dssp ---------------------------TTTTHHHHHHHHHHHTTSSEEE--ECTTC-CTTTHHHHHHHHCCSEEEEC
T ss_pred ---------------------------hHHhHHHHHHHHHHhCCCCEEE--ECCCc-CHHHHHHHHHhhCCCEEeEC
Confidence 01124455555432 357887 78999 6999999986 999988765
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.9e-07 Score=90.94 Aligned_cols=154 Identities=18% Similarity=0.140 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCCCC----CHHHHHHHHhhc--CcceeeccccCcHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVARMS----DPQLIKEIKQSV--TIPVMAKARIGHFVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~~~----~~~~i~~i~~~~--~iPv~vk~~~~~~~~ 106 (310)
+.|+.+.++|+|+| +++ |. +...+.+||+ ... ..+.++.+++++ +.|+.++.....+.
T Consensus 145 ~aA~~a~~aGfd~v-eih~~~gyl~~qFlsp~~n~r~d~yGgs-~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~- 221 (671)
T 1ps9_A 145 RCAQLAREAGYDGV-EVMGSEGYLINEFLTLRTNQRSDQWGGD-YRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLV- 221 (671)
T ss_dssp HHHHHHHHTTCSEE-EEEECBTSHHHHHHCTTTCCCCSTTSSS-HHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCS-
T ss_pred HHHHHHHHcCCCEE-EEccccchHHHHhCCCccCCCcCcCCCc-HHHHHHHHHHHHHHHHHHcCCCceEEEEECccccC-
Confidence 45788899999997 664 21 3344455665 221 235666777777 78888877643100
Q ss_pred HHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 107 AQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
....+..+.. +-++.+.+.|+|++.+++.....
T Consensus 222 --------------~~g~~~~~~~-------------------~~a~~l~~~g~d~i~v~~~~~~~-------------- 254 (671)
T 1ps9_A 222 --------------EDGGTFAETV-------------------ELAQAIEAAGATIINTGIGWHEA-------------- 254 (671)
T ss_dssp --------------TTCCCHHHHH-------------------HHHHHHHHHTCSEEEEEECBTTC--------------
T ss_pred --------------CCCCCHHHHH-------------------HHHHHHHhcCCCEEEcCCCcccc--------------
Confidence 0011112211 22445667899999887532111
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCC
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGD 260 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~d 260 (310)
..++.... .......++++.+++..++||+ +.|||.+++++.++++.| ||+|++||+++..+|
T Consensus 255 ---~~~~~~~~------~~~~~~~~~~~~i~~~~~iPvi--~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~ 318 (671)
T 1ps9_A 255 ---RIPTIATP------VPRGAFSWVTRKLKGHVSLPLV--TTNRINDPQVADDILSRGDADMVSMARPFLADAE 318 (671)
T ss_dssp ---SSCSSSTT------SCTTTTHHHHHHHTTSCSSCEE--ECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTT
T ss_pred ---cccccccc------CCcchHHHHHHHHHHhcCceEE--EeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcH
Confidence 01111100 0011235788889988899998 789999999999999988 999999999998433
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6e-07 Score=88.07 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=84.6
Q ss_pred HHHHHHHHHcCCCEEEe--CCCCC--chhHHHHHHhcCCC-CcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHH
Q 021609 104 FVEAQILEAIGIDYVDE--SEVLT--PADEENHINKHNFR-IPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~--~~~~~--~~~~~~~i~~~~~~-i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
.+.++.+.+.|++.+.. +.... ..+..+.+++..++ +++++ .+.+.++++.+.++|+|++.+ |.++++ ++..
T Consensus 244 ~e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~V-g~~~g~-~~~~ 321 (503)
T 1me8_A 244 RERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKI-GIGGGS-ICIT 321 (503)
T ss_dssp HHHHHHHHHHTCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEE-CSSCST-TCCS
T ss_pred HHHHHHHHhhhccceEEecccCcccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEe-cccCCc-Cccc
Confidence 45577888889999853 32222 22334555554345 66665 488999999999999999988 443321 1100
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhc---C------CCCEEEeCCCCCCCHHHHHHHHHcCCC
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQL---G------RLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~---~------~iPVi~iA~GGI~t~~d~~~~l~~Gad 247 (310)
+.+. +. .+....+.++.+. . ++||+ ++|||+++.|+.+++.+|||
T Consensus 322 -----------r~~~------------~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvi--a~GGi~~~~di~kAlalGA~ 376 (503)
T 1me8_A 322 -----------REQK------------GIGRGQATAVIDVVAERNKYFEETGIYIPVC--SDGGIVYDYHMTLALAMGAD 376 (503)
T ss_dssp -----------TTTT------------CCCCCHHHHHHHHHHHHHHHHHHHSEECCEE--EESCCCSHHHHHHHHHTTCS
T ss_pred -----------cccc------------CCCCchHHHHHHHHHHHHHHhhhcCCCceEE--EeCCCCCHHHHHHHHHcCCC
Confidence 0000 11 2234444444332 1 58998 89999999999999999999
Q ss_pred EEEEccccccC
Q 021609 248 GVFVGSGVFKS 258 (310)
Q Consensus 248 gV~VGsai~~a 258 (310)
+|++|+.|+.+
T Consensus 377 ~V~iG~~~~~~ 387 (503)
T 1me8_A 377 FIMLGRYFARF 387 (503)
T ss_dssp EEEESHHHHTB
T ss_pred EEEECchhhcc
Confidence 99999999764
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=9.1e-07 Score=77.85 Aligned_cols=43 Identities=28% Similarity=0.355 Sum_probs=33.6
Q ss_pred cHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 209 ~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
.++.++.+++.. ++||+ ++|||+|++|+.+++++|||.|.+++
T Consensus 161 ~~~~i~~v~~~v~~~ipVi--a~GGI~t~~da~~~l~aGA~~iG~s~ 205 (225)
T 1mzh_A 161 TLEEVRLIKSSAKGRIKVK--ASGGIRDLETAISMIEAGADRIGTSS 205 (225)
T ss_dssp CHHHHHHHHHHHTTSSEEE--EESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred CHHHHHHHHHHhCCCCcEE--EECCCCCHHHHHHHHHhCchHHHHcc
Confidence 455566666543 79998 78999999999999999999655443
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=4.4e-07 Score=85.88 Aligned_cols=149 Identities=14% Similarity=0.030 Sum_probs=90.6
Q ss_pred HHHHHHHHcCCcEEEecc------------CC-cccccccCCCCCCC----CHHHHHHHHhhcCc-ceeeccccCcHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------RV-PADIRSQGGVARMS----DPQLIKEIKQSVTI-PVMAKARIGHFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~~-~~~~~~~~G~~~~~----~~~~i~~i~~~~~i-Pv~vk~~~~~~~~a 107 (310)
+.|+.+.++|+|+| +|+ |. +...+.+||+. .. ..+.++.++++++- ||.++.....+.
T Consensus 171 ~AA~~a~~aGfDgV-Eih~a~GyLl~qFlsp~~N~R~D~yGGsl-enR~r~~~eiv~aVr~avg~~~V~vrls~~~~~-- 246 (376)
T 1icp_A 171 VAARNAIEAGFDGV-EIHGAHGYLIDQFMKDQVNDRSDKYGGSL-ENRCRFALEIVEAVANEIGSDRVGIRISPFAHY-- 246 (376)
T ss_dssp HHHHHHHHTTCSEE-EEEECTTSHHHHHHCTTTCCCCSTTSSSH-HHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCT--
T ss_pred HHHHHHHHcCCCEE-EEcCccchhhhhccCCcccCCCCccCccH-HHhHHHHHHHHHHHHHHhcCCceEEEecccccc--
Confidence 46778889999997 664 11 23334456652 21 23566777877742 999887643110
Q ss_pred HHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 108 QILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
.|.+ ...+..+.. +-++++.+.|+|+|.++++.....
T Consensus 247 -----~g~~-----~~~~~~~~~-------------------~la~~le~~Gvd~i~v~~~~~~~~-------------- 283 (376)
T 1icp_A 247 -----NEAG-----DTNPTALGL-------------------YMVESLNKYDLAYCHVVEPRMKTA-------------- 283 (376)
T ss_dssp -----TTCC-----CSCHHHHHH-------------------HHHHHHGGGCCSEEEEECCSCCC---------------
T ss_pred -----CCCC-----CCCCHHHHH-------------------HHHHHHHHcCCCEEEEcCCcccCC--------------
Confidence 0000 000011111 224456678999999886532110
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
.+ . ...++.++.+++..++||+ ++||| +++++.++++.| ||.|++||+++. ||.
T Consensus 284 -------~~--------~-~~~~~~~~~vr~~~~iPvi--~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~--~P~ 338 (376)
T 1icp_A 284 -------WE--------K-IECTESLVPMRKAYKGTFI--VAGGY-DREDGNRALIEDRADLVAYGRLFIS--NPD 338 (376)
T ss_dssp ---------------------CCCCSHHHHHHCCSCEE--EESSC-CHHHHHHHHHTTSCSEEEESHHHHH--CTT
T ss_pred -------CC--------c-cccHHHHHHHHHHcCCCEE--EeCCC-CHHHHHHHHHCCCCcEEeecHHHHh--Ccc
Confidence 00 0 0012345567777789998 78999 899999999887 999999999998 675
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=98.46 E-value=4e-06 Score=72.45 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=43.1
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
..+.+.+++...++|++ +.||+.+++++.++++.|+|++++||+++..+
T Consensus 162 ~~~~i~~~~~~~~~Pvi--a~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~ 210 (237)
T 3cwo_X 162 DTEMIRFVRPLTTLPII--ASGGAGKMEHFLEAFLAGADAALAASVFHFRE 210 (237)
T ss_dssp CHHHHHHHGGGCCSCEE--EESCCCSHHHHHHHHHHTCSEEEESHHHHTTS
T ss_pred cHHHHHHHHHhcCCCEE--ecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCC
Confidence 36778888887899999 56999999999999999999999999997643
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-06 Score=80.81 Aligned_cols=141 Identities=16% Similarity=0.084 Sum_probs=89.1
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCC--CC-CHHHHHHHHhhcCc-ceeeccccCcHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSVTI-PVMAKARIGHFVEAQ 108 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~~i-Pv~vk~~~~~~~~a~ 108 (310)
+.|+.+.++|+|+| +|+ | .+...+.+||+-. .+ ..+.++.++++++- ||.++.....+.
T Consensus 157 ~AA~~a~~aGfDgV-Eih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~--- 232 (362)
T 4ab4_A 157 SGAENAKAAGFDGV-EIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADA--- 232 (362)
T ss_dssp HHHHHHHHTTCSEE-EEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCS---
T ss_pred HHHHHHHHcCCCEE-EECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccc---
Confidence 46788899999997 665 2 2344555666621 11 13466667777632 898887643100
Q ss_pred HHHHcCCCEEEeCCCCCch-hHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 109 ILEAIGIDYVDESEVLTPA-DEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~-~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
...... ..... .+-++.+.+.|+|+|.++++. .+
T Consensus 233 -------------~g~~~~~~~~~~----------------~~la~~l~~~Gvd~i~v~~~~-~~--------------- 267 (362)
T 4ab4_A 233 -------------HDMGDADRAETF----------------TYVARELGKRGIAFICSRERE-AD--------------- 267 (362)
T ss_dssp -------------SSCCCTTHHHHH----------------HHHHHHHHHTTCSEEEEECCC-CT---------------
T ss_pred -------------cccCCCCcHHHH----------------HHHHHHHHHhCCCEEEECCCC-CC---------------
Confidence 000000 00000 122455667899999987643 11
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
. ++++.+++..++||+ +.||+ +++++.++++.| ||.|++|++++. ||.
T Consensus 268 -------------------~---~~~~~ik~~~~iPvi--~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~la--nPd 316 (362)
T 4ab4_A 268 -------------------D---SIGPLIKEAFGGPYI--VNERF-DKASANAALASGKADAVAFGVPFIA--NPD 316 (362)
T ss_dssp -------------------T---CCHHHHHHHHCSCEE--EESSC-CHHHHHHHHHTTSCSEEEESHHHHH--CTT
T ss_pred -------------------H---HHHHHHHHHCCCCEE--EeCCC-CHHHHHHHHHcCCccEEEECHHhHh--CcH
Confidence 0 134556666678998 67999 999999999987 999999999998 665
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=98.43 E-value=1.1e-06 Score=82.73 Aligned_cols=142 Identities=17% Similarity=0.086 Sum_probs=89.8
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCCC--CC-CHHHHHHHHhhcCc-ceeeccccCcHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVAR--MS-DPQLIKEIKQSVTI-PVMAKARIGHFVEAQ 108 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~~--~~-~~~~i~~i~~~~~i-Pv~vk~~~~~~~~a~ 108 (310)
+.|+.+.++|+|+| +|+ | .+...+.+||+-. .+ ..+.++.++++++- ||.++.....+.
T Consensus 165 ~AA~~A~~aGfDgV-Eih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~--- 240 (361)
T 3gka_A 165 RGAENARAAGFDGV-EVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDA--- 240 (361)
T ss_dssp HHHHHHHHTTCSEE-EEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCS---
T ss_pred HHHHHHHHcCCCEE-EECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEeccccccc---
Confidence 46888899999997 665 2 2344555666631 11 23567777877742 898877643100
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccce
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~ 188 (310)
.|.+ ...+..+.. +-++.+.+.|+|+|.++++.. +
T Consensus 241 ----~g~~-----~~~~~~~~~-------------------~la~~l~~~Gvd~i~v~~~~~-~---------------- 275 (361)
T 3gka_A 241 ----HTMG-----DSDPAATFG-------------------HVARELGRRRIAFLFARESFG-G---------------- 275 (361)
T ss_dssp ----SSCC-----CSCHHHHHH-------------------HHHHHHHHTTCSEEEEECCCS-T----------------
T ss_pred ----CCCC-----CCCcHHHHH-------------------HHHHHHHHcCCCEEEECCCCC-C----------------
Confidence 0000 000000111 224556678999999876421 1
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
. ++++.+++..++||+ +.||| +++++.++++.| ||.|++|++++. ||.
T Consensus 276 ------------------~---~~~~~ik~~~~iPvi--~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~la--dPd 324 (361)
T 3gka_A 276 ------------------D---AIGQQLKAAFGGPFI--VNENF-TLDSAQAALDAGQADAVAWGKLFIA--NPD 324 (361)
T ss_dssp ------------------T---CCHHHHHHHHCSCEE--EESSC-CHHHHHHHHHTTSCSEEEESHHHHH--CTT
T ss_pred ------------------H---HHHHHHHHHcCCCEE--EeCCC-CHHHHHHHHHcCCccEEEECHHhHh--CcH
Confidence 0 134556666678998 67999 999999999987 999999999998 665
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-06 Score=81.37 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=41.2
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
+ ++.+++..++||+ +.||| +++++.++++.| ||.|++|++++. ||.
T Consensus 298 ~-~~~ir~~~~iPvi--~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~--~P~ 344 (379)
T 3aty_A 298 V-VAWVRGSYSGVKI--SNLRY-DFEEADQQIREGKVDAVAFGAKFIA--NPD 344 (379)
T ss_dssp H-HHHHHTTCCSCEE--EESSC-CHHHHHHHHHTTSCSEEEESHHHHH--CTT
T ss_pred H-HHHHHHHCCCcEE--EECCC-CHHHHHHHHHcCCCeEEEecHHHHh--CcH
Confidence 5 7788888899998 67999 899999999987 999999999998 665
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=98.35 E-value=5.1e-05 Score=67.41 Aligned_cols=167 Identities=20% Similarity=0.259 Sum_probs=108.4
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--Cc-----------HHHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--GH-----------FVEAQ 108 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~-----------~~~a~ 108 (310)
+.+++-|.+++++||+.| +||... . .+| +.+++..++.+++.+++||.+..|. ++ .++++
T Consensus 8 ~~s~~~a~~A~~~GAdRI-ELc~~L---~-~GG--lTPS~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~ 80 (256)
T 1twd_A 8 CYSMECALTAQQNGADRV-ELCAAP---K-EGG--LTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVR 80 (256)
T ss_dssp ESSHHHHHHHHHTTCSEE-EECBCG---G-GTC--BCCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEE-EEcCCc---c-cCC--CCCCHHHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHH
Confidence 356789999999999998 886221 1 122 2466889999999999999987665 21 25677
Q ss_pred HHHHcCCCEEE-e---CCC-CCchhHHHHHHhcCCCCcEEE----e-cCCHHHHHH-HHHhCCCEEEEcCCCCCcchHHH
Q 021609 109 ILEAIGIDYVD-E---SEV-LTPADEENHINKHNFRIPFVC----G-CRNLGEALR-RIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 109 ~~~~aGad~Vi-~---~~~-~~~~~~~~~i~~~~~~i~~~v----~-~~t~~ea~~-~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
.+.++|+|+|+ + .+. +......+++...+ +++++. | +.+..++.. +.++|++-|-++|...+
T Consensus 81 ~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~-~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILTSG~~~~------ 153 (256)
T 1twd_A 81 TVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAG-PLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSD------ 153 (256)
T ss_dssp HHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT-TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSSS------
T ss_pred HHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhC-CCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCCCCC------
Confidence 88899999996 2 222 33444455554321 233222 1 455555544 56789988777653210
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
.....+.++++.+.. ++.|+ ++||| +++++.+++.+|+..+-.+.
T Consensus 154 ----------------------------a~~g~~~L~~Lv~~a~~i~Im--~GgGv-~~~Ni~~l~~tGv~e~H~Sa 199 (256)
T 1twd_A 154 ----------------------------ALQGLSKIMELIAHRDAPIIM--AGAGV-RAENLHHFLDAGVLEVHSSA 199 (256)
T ss_dssp ----------------------------TTTTHHHHHHHHTSSSCCEEE--EESSC-CTTTHHHHHHHTCSEEEECC
T ss_pred ----------------------------HHHHHHHHHHHHHhhCCcEEE--ecCCc-CHHHHHHHHHcCCCeEeECC
Confidence 112245566665433 44454 79999 69999998889999998664
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=88.92 Aligned_cols=50 Identities=24% Similarity=0.341 Sum_probs=44.4
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
.+++++.+++..++||+ +.|||.+++++.++++.| ||.|++|++++. ||+
T Consensus 282 ~~~~~~~i~~~~~~pvi--~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~--~P~ 332 (690)
T 3k30_A 282 QEEFVAGLKKLTTKPVV--GVGRFTSPDAMVRQIKAGILDLIGAARPSIA--DPF 332 (690)
T ss_dssp THHHHTTSGGGCSSCEE--ECSCCCCHHHHHHHHHTTSCSEEEESHHHHH--CTT
T ss_pred cHHHHHHHHHHcCCeEE--EeCCCCCHHHHHHHHHCCCcceEEEcHHhHh--Ccc
Confidence 35677788888899998 789999999999999887 999999999997 776
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-05 Score=69.81 Aligned_cols=176 Identities=17% Similarity=0.193 Sum_probs=106.6
Q ss_pred CHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHH---hhcCcceeecccc--Cc-----------HHHH
Q 021609 44 TPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIK---QSVTIPVMAKARI--GH-----------FVEA 107 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~---~~~~iPv~vk~~~--~~-----------~~~a 107 (310)
+++.|..++++||+.| +||.. .. .+| +.+++..++.++ +.+++||.+..|. ++ .+++
T Consensus 10 s~~~a~~A~~~GAdRI-ELc~~---L~-~GG--lTPS~g~i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di 82 (224)
T 2bdq_A 10 NLTDLTRLDKAIISRV-ELCDN---LA-VGG--TTPSYGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDI 82 (224)
T ss_dssp TTTTGGGCCTTTCCEE-EEEBC---GG-GTC--BCCCHHHHHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEE-EEcCC---cc-cCC--cCCCHHHHHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHHH
Confidence 4566777889999998 88622 11 122 245678888888 8899999887665 21 2567
Q ss_pred HHHHHcCCCEEE-e---CCC-CCchhHHHHHHhcCCCCcEEE----e-c--CCHHHHHH-HHHhCCCEEEEcCCCCCcch
Q 021609 108 QILEAIGIDYVD-E---SEV-LTPADEENHINKHNFRIPFVC----G-C--RNLGEALR-RIREGAAMIRTKGEAGTGNI 174 (310)
Q Consensus 108 ~~~~~aGad~Vi-~---~~~-~~~~~~~~~i~~~~~~i~~~v----~-~--~t~~ea~~-~~~~Gad~V~v~g~~~~~~~ 174 (310)
+.+.++|+|+|+ + .+. +......+++...+ +++++. | + .+..++.. +.++|++-|-++|...+...
T Consensus 83 ~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~-~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILTSG~~~~~~a 161 (224)
T 2bdq_A 83 LRAVELESDALVLGILTSNNHIDTEAIEQLLPATQ-GLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILLHGSSNGEPI 161 (224)
T ss_dssp HHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT-TCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEECSCSSCCCG
T ss_pred HHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhC-CCeEEEECchhccCCcCHHHHHHHHHHcCCCEEECCCCCCCCcH
Confidence 788899999996 2 222 34444455554421 233222 2 3 45555544 56889988877764321100
Q ss_pred HHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEE
Q 021609 175 IEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMM-QLGCDGVFV 251 (310)
Q Consensus 175 ~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~V 251 (310)
....+.++++.+. .++.|+ +.||| +++++.+++ .+|++.+-.
T Consensus 162 --------------------------------~~g~~~L~~Lv~~a~~ri~Im--~GgGV-~~~Ni~~l~~~tGv~e~H~ 206 (224)
T 2bdq_A 162 --------------------------------IENIKHIKALVEYANNRIEIM--VGGGV-TAENYQYICQETGVKQAHG 206 (224)
T ss_dssp --------------------------------GGGHHHHHHHHHHHTTSSEEE--ECSSC-CTTTHHHHHHHHTCCEEEE
T ss_pred --------------------------------HHHHHHHHHHHHhhCCCeEEE--eCCCC-CHHHHHHHHHhhCCCEEcc
Confidence 1123444444332 345565 79999 699999988 689999998
Q ss_pred ccccccCCCHH
Q 021609 252 GSGVFKSGDPV 262 (310)
Q Consensus 252 Gsai~~a~dp~ 262 (310)
.+.+.++.+|.
T Consensus 207 s~i~~~~~~~~ 217 (224)
T 2bdq_A 207 TRITQMAGDPL 217 (224)
T ss_dssp TTCC-------
T ss_pred ccccCCCCCcc
Confidence 77777777875
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=5.3e-06 Score=84.87 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=45.2
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
.+++++.+++..++||+ +.|||.+++++.++++.| ||.|++|++++. ||.
T Consensus 279 ~~~~~~~i~~~~~~pvi--~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~--~P~ 329 (729)
T 1o94_A 279 TIPWVKLVKQVSKKPVL--GVGRYTDPEKMIEIVTKGYADIIGCARPSIA--DPF 329 (729)
T ss_dssp THHHHHHHHTTCSSCEE--CCSCCCCHHHHHHHHHTTSCSBEEESHHHHH--CTT
T ss_pred cHHHHHHHHHHCCCEEE--EeCCCCCHHHHHHHHHCCCCCEEEeCchhhc--Cch
Confidence 46778889988899998 899999999999999887 999999999998 775
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.8e-05 Score=65.73 Aligned_cols=185 Identities=17% Similarity=0.194 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccC-c-HHHHHHHHHcCCCE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIG-H-FVEAQILEAIGIDY 117 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~-~-~~~a~~~~~aGad~ 117 (310)
+++++.|+.+.++|||++ +... ..|.+.-+++..+++.+.+. -+..+..+.+ . .+..+.+.+.+.|.
T Consensus 8 it~~eda~~a~~~GaD~iGfif~---------~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~ 78 (203)
T 1v5x_A 8 ITRLEDALLAEALGAFALGFVLA---------PGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQV 78 (203)
T ss_dssp CCCHHHHHHHHHHTCSEEEEECC---------TTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSE
T ss_pred CCcHHHHHHHHHcCCCEEEEEec---------CCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCE
Confidence 688999999999999987 2221 12323345788888876542 1222333333 2 34456778899999
Q ss_pred EEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCC-CCCcchHHHHHHHHhhccceEeecccCh
Q 021609 118 VDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE-AGTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~-~~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
|-.+...++..+.. +. .+..+.-.+.+++..+. .+....+|++-+... +++|.
T Consensus 79 vQLHG~e~~~~~~~-l~-~~~~vika~~v~~~~~l-~~~~~~~d~~LlD~~~gGtG~----------------------- 132 (203)
T 1v5x_A 79 AQLHGEEPPEWAEA-VG-RFYPVIKAFPLEGPARP-EWADYPAQALLLDGKRPGSGE----------------------- 132 (203)
T ss_dssp EEECSCCCHHHHHH-HT-TTSCEEEEEECSSSCCG-GGGGSSCSEEEEECSSTTSCC-----------------------
T ss_pred EEECCCCCHHHHHH-hc-cCCCEEEEEEcCChHhh-hhhhcCCCEEEEcCCCCCCCC-----------------------
Confidence 95444444544433 32 12222223344443333 222333777765543 23331
Q ss_pred hHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC---CCHHHHHHHHHHHHh
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS---GDPVKRAQAIVRAVT 273 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a---~dp~~~a~~l~~~i~ 273 (310)
.-+|.+++.+.. .+.|++ .+||+ +++++.+++..+++||=|.|.+=.+ .|+. ..++|++.++
T Consensus 133 ----------~fdW~~l~~~~~-~~~p~~--LAGGL-~peNV~~ai~~~p~gVDvsSGvE~~pG~KD~~-ki~~fi~~~r 197 (203)
T 1v5x_A 133 ----------AYPRAWAKPLLA-TGRRVI--LAGGI-APENLEEVLALRPYALDLASGVEEAPGVKSAE-KLRALFARLA 197 (203)
T ss_dssp ----------CCCGGGGHHHHH-TTSCEE--ECSSC-CSTTHHHHHHHCCSEEEESGGGEEETTEECHH-HHHHHHHHHH
T ss_pred ----------ccCHHHHHhhhc-cCCcEE--EECCC-CHHHHHHHHhcCCCEEEeCCceecCCCCcCHH-HHHHHHHHHH
Confidence 223545544212 357998 58999 7999988887799999999999853 3765 4556888887
Q ss_pred ccC
Q 021609 274 HYS 276 (310)
Q Consensus 274 ~~~ 276 (310)
.+.
T Consensus 198 ~~~ 200 (203)
T 1v5x_A 198 SLR 200 (203)
T ss_dssp HTC
T ss_pred Hhh
Confidence 643
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=98.19 E-value=5.3e-06 Score=73.62 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=46.3
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
...+++++++++..++|++ +.|||++++++.++++.|||+|++|++++. ||.
T Consensus 65 ~~~~~~i~~i~~~~~ipvi--~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~--dp~ 116 (247)
T 3tdn_A 65 GYDTEMIRFVRPLTTLPII--ASGGAGKMEHFLEAFLRGADKVSINTAAVE--NPS 116 (247)
T ss_dssp CCCHHHHHHHGGGCCSCEE--EESCCCSHHHHHHHHHTTCSEECCSHHHHH--CTH
T ss_pred cccHHHHHHHHHhCCCCEE--EeCCCCCHHHHHHHHHcCCCeeehhhHHhh--ChH
Confidence 3457889999988899998 689999999999999999999999999997 554
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=98.18 E-value=3.2e-05 Score=68.07 Aligned_cols=181 Identities=13% Similarity=0.163 Sum_probs=93.4
Q ss_pred ccCCCHHHHHHHHH-cC--CcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc-----HHHHHHH
Q 021609 40 MDVVTPEQARVAEE-AG--ACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH-----FVEAQIL 110 (310)
Q Consensus 40 ~~~~~~~~A~~~~~-~G--a~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~-----~~~a~~~ 110 (310)
.|+.+.+.+..+.+ .| ++++ +.+. . ...+| ++.++++++..+.++.....+.+ ...++.+
T Consensus 19 lD~~~~~~a~~~v~~~~~~v~~~Kvg~~-l---f~~~G-------~~~v~~l~~~~g~~v~lD~Kl~DipnTv~~~~~~~ 87 (228)
T 3m47_A 19 MDLMNRDDALRVTGEVREYIDTVKIGYP-L---VLSEG-------MDIIAEFRKRFGCRIIADFKVADIPETNEKICRAT 87 (228)
T ss_dssp CCCCSHHHHHHHHHTTTTTCSEEEEEHH-H---HHHHC-------THHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHcCCcccEEEEcHH-H---HHhcC-------HHHHHHHHhcCCCeEEEEEeecccHhHHHHHHHHH
Confidence 35566766666644 55 5666 3331 1 12233 57788887744556555433321 2246778
Q ss_pred HHcCCCEEEeCCCCCc---hhHHHHHHhcCCCCcEEEecCCHH-----------HHHHHHHhCCCEEEEcCCCCCcchHH
Q 021609 111 EAIGIDYVDESEVLTP---ADEENHINKHNFRIPFVCGCRNLG-----------EALRRIREGAAMIRTKGEAGTGNIIE 176 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~---~~~~~~i~~~~~~i~~~v~~~t~~-----------ea~~~~~~Gad~V~v~g~~~~~~~~~ 176 (310)
.++|+|.+..+..... ....+.+++.+.++.++.+..+.. -+..+.+.|.+.+.+..
T Consensus 88 ~~~gad~vtvh~~~G~~~l~~~~~~~~~~g~~v~vLt~~s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~a--------- 158 (228)
T 3m47_A 88 FKAGADAIIVHGFPGADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPS--------- 158 (228)
T ss_dssp HHTTCSEEEEESTTCHHHHHHHHHHHHHHTCEEEEECCCCSGGGGTTHHHHHHHHHHHHHHTTCCEEECCS---------
T ss_pred HhCCCCEEEEeccCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHHHHHHHHHHHHHHHhCCcEEEECC---------
Confidence 8899999964332222 233333333333333333322211 01222334544433221
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-C-CCCEEEeCCCCCCCHH--HHHHHHHcCCCEEEEc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-G-RLPVVHFAAGGVATPA--DAAMMMQLGCDGVFVG 252 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~-~iPVi~iA~GGI~t~~--d~~~~l~~GadgV~VG 252 (310)
...+.++.+++. . +.+++ ..||+ +. +. +++++|+|.+++|
T Consensus 159 -------------------------------t~~~e~~~ir~~~~~~~~iv---~PGI~-~~g~~p-~~~~aGad~iVvG 202 (228)
T 3m47_A 159 -------------------------------TRPERLSRLREIIGQDSFLI---SPGVG-AQGGDP-GETLRFADAIIVG 202 (228)
T ss_dssp -------------------------------SCHHHHHHHHHHHCSSSEEE---ECC-----------CGGGTCSEEEEC
T ss_pred -------------------------------CChHHHHHHHHhcCCCCEEE---ecCcC-cCCCCH-hHHHcCCCEEEEC
Confidence 011223444443 2 24554 47885 43 56 7789999999999
Q ss_pred cccccCCCHHHHHHHHHHHHhccC
Q 021609 253 SGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 253 sai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
|+|++++||...++++.+.+++..
T Consensus 203 r~I~~a~dp~~a~~~~~~~~~~~~ 226 (228)
T 3m47_A 203 RSIYLADNPAAAAAGAIESIKDLL 226 (228)
T ss_dssp HHHHTSSCHHHHHHHHHHHC----
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999988876543
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00011 Score=63.48 Aligned_cols=183 Identities=16% Similarity=0.140 Sum_probs=110.9
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccC-c-HHHHHHHHHcCCCE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIG-H-FVEAQILEAIGIDY 117 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~-~-~~~a~~~~~aGad~ 117 (310)
+++++.|+.+.++|||++ +... ..|.+.-+++..+++.+.+. .+..+..+.+ . .+..+.+.+.+.|.
T Consensus 9 it~~eda~~a~~~GaD~iGfif~---------~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~ 79 (205)
T 1nsj_A 9 ITNLEDALFSVESGADAVGFVFY---------PKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNA 79 (205)
T ss_dssp CCSHHHHHHHHHHTCSEEEEECC---------TTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSE
T ss_pred CCcHHHHHHHHHcCCCEEEEEec---------CCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCE
Confidence 688999999999999987 2221 12323345788888876542 2222333333 2 34456778899999
Q ss_pred EEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCC----CCCcchHHHHHHHHhhccceEeecc
Q 021609 118 VDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGE----AGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~----~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
|-.+...++..+ +.++. ...+.-.+.+.+..+...+.+..+|++-+... +++|.
T Consensus 80 vQLHG~e~~~~~-~~l~~-~~~vika~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGtG~-------------------- 137 (205)
T 1nsj_A 80 VQLHGEEPIELC-RKIAE-RILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSGK-------------------- 137 (205)
T ss_dssp EEECSCCCHHHH-HHHHT-TSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCCS--------------------
T ss_pred EEECCCCCHHHH-HHHhc-CCCEEEEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCCCC--------------------
Confidence 954444444433 33421 22333344566666665554455787765533 23331
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccC---CCHHHHHHHHH
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS---GDPVKRAQAIV 269 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a---~dp~~~a~~l~ 269 (310)
.-+|++++.+. ..+.|++ .+||+ +++++.++++ .+++||=|.|.+=.+ .|+. ..++|+
T Consensus 138 -------------~fdw~~l~~~~-~~~~p~~--LAGGL-~peNV~~ai~~~~p~gVDvsSGvE~~pG~KD~~-ki~~fi 199 (205)
T 1nsj_A 138 -------------TFDWSLILPYR-DRFRYLV--LSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPGKKDHD-SIKMFI 199 (205)
T ss_dssp -------------CCCGGGTGGGG-GGSSCEE--EESSC-CTTTHHHHHHHHCCSEEEESGGGEEETTEECHH-HHHHHH
T ss_pred -------------ccCHHHHHhhh-cCCCcEE--EECCC-CHHHHHHHHHhcCCCEEEECCceecCCCCcCHH-HHHHHH
Confidence 22344443331 1257998 57999 7999988875 699999999999853 3765 445577
Q ss_pred HHHh
Q 021609 270 RAVT 273 (310)
Q Consensus 270 ~~i~ 273 (310)
+.++
T Consensus 200 ~~~r 203 (205)
T 1nsj_A 200 KNAK 203 (205)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7665
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1e-06 Score=82.56 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=63.3
Q ss_pred HHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcc
Q 021609 211 DLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLG 289 (310)
Q Consensus 211 ~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~ 289 (310)
+.+.++.+. .++||| +.|||.|++|+.+.+.+|||.|+|+|+++. .+|. ..+++.+.+.++++.+++.++++..|
T Consensus 266 ~~v~~~~~~~~~~pII--g~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y-~GP~-~~~~I~~~L~~~L~~~G~~si~e~~G 341 (354)
T 3tjx_A 266 ANINAFYRRCPGKLIF--GCGGVYTGEDAFLHVLAGASMVQVGTALQE-EGPS-IFERLTSELLGVMAKKRYQTLDEFRG 341 (354)
T ss_dssp HHHHHHHHHCTTSEEE--EESSCCSHHHHHHHHHHTEEEEEECHHHHH-HCTT-HHHHHHHHHHHHHHHHTCCSGGGTTT
T ss_pred HHHHHHHHhcCCCcEE--EeCCcCCHHHHHHHHHcCCCEEEEChhhhh-cCch-HHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence 345555443 468887 789999999999999999999999999753 2565 55669999999999999999999999
Q ss_pred cc
Q 021609 290 EA 291 (310)
Q Consensus 290 ~~ 291 (310)
..
T Consensus 342 ~~ 343 (354)
T 3tjx_A 342 KV 343 (354)
T ss_dssp CC
T ss_pred hh
Confidence 64
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.9e-05 Score=71.84 Aligned_cols=91 Identities=21% Similarity=0.249 Sum_probs=65.9
Q ss_pred hHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc
Q 021609 128 DEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI 206 (310)
Q Consensus 128 ~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~ 206 (310)
+..+.+++ .++...+.++++|.++++.+.++|+|+|.+.+... +++
T Consensus 184 ~av~~ar~~~~~~~~IgVev~t~eea~eA~~aGaD~I~ld~~~~--------------------------~~~------- 230 (286)
T 1x1o_A 184 EAVRRAKARAPHYLKVEVEVRSLEELEEALEAGADLILLDNFPL--------------------------EAL------- 230 (286)
T ss_dssp HHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHTCSEEEEESCCH--------------------------HHH-------
T ss_pred HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCCH--------------------------HHH-------
Confidence 33444544 34457899999999999999999999999875311 000
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+.++.++ .++|+. ++||| +++++.++.++|+|++.+|+.+..++
T Consensus 231 ---k~av~~v~--~~ipi~--AsGGI-t~eni~~~a~tGvD~IsVgs~~~~a~ 275 (286)
T 1x1o_A 231 ---REAVRRVG--GRVPLE--ASGNM-TLERAKAAAEAGVDYVSVGALTHSAK 275 (286)
T ss_dssp ---HHHHHHHT--TSSCEE--EESSC-CHHHHHHHHHHTCSEEECTHHHHSCC
T ss_pred ---HHHHHHhC--CCCeEE--EEcCC-CHHHHHHHHHcCCCEEEEcHHHcCCC
Confidence 11222232 258998 67999 79999999999999999998777643
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-05 Score=76.86 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCEEEeC--CCCC--chhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHH
Q 021609 105 VEAQILEAIGIDYVDES--EVLT--PADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVR 179 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~--~~~~--~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~ 179 (310)
+.+..+.+.|+|.++.. .... ..+..+.+++. .++++++. +.+.+.+..+. |+|.|.+ |.+.+ .++. .
T Consensus 231 ~~a~~l~~~gvd~lvvdta~G~~~~~L~~I~~l~~~-~~vpvi~k~v~~~~~a~~l~--G~d~v~v-g~g~g-~~~~-~- 303 (486)
T 2cu0_A 231 KRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQK-VDADFIVGNIANPKAVDDLT--FADAVKV-GIGPG-SICT-T- 303 (486)
T ss_dssp HHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHT-CCSEEEEEEECCHHHHTTCT--TSSEEEE-CSSCS-TTBC-H-
T ss_pred HHHHHHHHhcCCceEEEecCCcEeehhhHHHHHHHH-hCCccccCCcCCHHHHHHhh--CCCeEEE-eeeec-ccee-e-
Confidence 56778889999987522 2221 22233444442 36676664 66888777766 9999998 43322 2111 0
Q ss_pred HHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
|. +...+.. ....+..+.++.+..++||| ++|||.+..|+.+++.+|||+|++|+.|+.+
T Consensus 304 --r~-------~~~~g~~--------~~~~l~~~~~~~~~~~vpVi--a~GGi~~~~di~kalalGA~~v~~g~~~~~~ 363 (486)
T 2cu0_A 304 --RI-------VAGVGVP--------QITAVAMVADRAQEYGLYVI--ADGGIRYSGDIVKAIAAGADAVMLGNLLAGT 363 (486)
T ss_dssp --HH-------HTCCCCC--------HHHHHHHHHHHHHHHTCEEE--EESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred --eE-------EeecCcc--------hHHHHHHHHHHHHHcCCcEE--ecCCCCCHHHHHHHHHcCCCceeeChhhhcC
Confidence 00 0000000 00112334444443478998 8899999999999999999999999999964
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00011 Score=67.08 Aligned_cols=38 Identities=21% Similarity=0.349 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 237 DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 237 d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
++.+++++|+|.+++||+|++++||...++++.+.++.
T Consensus 215 t~~~a~~aGAd~iVvGr~I~~a~dp~~a~~~i~~~i~~ 252 (303)
T 3ru6_A 215 NLAMARENLSDYIVVGRPIYKNENPRAVCEKILNKIHR 252 (303)
T ss_dssp SHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHC-
T ss_pred CHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHh
Confidence 46677899999999999999999999999999998875
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=86.26 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=74.8
Q ss_pred cCCCEEEeC--CC-CCchh---HHHHHHhcCCCCcEEEe-c---CCHHHHHHHHHhCCCEEEEcCCC-CCcc-hHHHHHH
Q 021609 113 IGIDYVDES--EV-LTPAD---EENHINKHNFRIPFVCG-C---RNLGEALRRIREGAAMIRTKGEA-GTGN-IIEAVRH 180 (310)
Q Consensus 113 aGad~Vi~~--~~-~~~~~---~~~~i~~~~~~i~~~v~-~---~t~~ea~~~~~~Gad~V~v~g~~-~~~~-~~~~~~~ 180 (310)
.|++.+.-+ .+ .++.+ +++.++...++.++++- + ....+|..+.++|+|.|.+.|.. +++. +....
T Consensus 996 ~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~-- 1073 (1520)
T 1ofd_A 996 PGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSI-- 1073 (1520)
T ss_dssp TTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHH--
T ss_pred CCCCeeCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhh--
Confidence 677776411 12 23343 34444444345565544 2 24678888899999999998874 3321 10000
Q ss_pred HHhhccceEeecccChhHHHHhhhcc-CCcHHHHHHHhhc-------CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKI-AAPYDLVMQTKQL-------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~~i~~i~~~-------~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
... .+....+.++.+. .++||+ ++|||++..|+.+++.+||++|.+|
T Consensus 1074 -----------------------~~~GlPt~~aL~ev~~al~~~glr~~IpVI--AdGGIrtG~DVakALaLGAdaV~iG 1128 (1520)
T 1ofd_A 1074 -----------------------KHAGSPWELGVTEVHRVLMENQLRDRVLLR--ADGGLKTGWDVVMAALMGAEEYGFG 1128 (1520)
T ss_dssp -----------------------HHBCCCHHHHHHHHHHHHHHTTCGGGCEEE--EESSCCSHHHHHHHHHTTCSEEECS
T ss_pred -----------------------cCCchhHHHHHHHHHHHHHhcCCCCCceEE--EECCCCCHHHHHHHHHcCCCeeEEc
Confidence 011 2223444444332 268998 7899999999999999999999999
Q ss_pred cccccC
Q 021609 253 SGVFKS 258 (310)
Q Consensus 253 sai~~a 258 (310)
++++.+
T Consensus 1129 TafL~a 1134 (1520)
T 1ofd_A 1129 SIAMIA 1134 (1520)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998663
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00099 Score=58.45 Aligned_cols=185 Identities=22% Similarity=0.254 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee-ccccCcHHHHHHHHHcCCCEEEe
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA-KARIGHFVEAQILEAIGIDYVDE 120 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v-k~~~~~~~~a~~~~~aGad~Vi~ 120 (310)
+++++.++ +.++|||++ .+. ...+|.+.-+++..+++.+....|+.+ ....+..+.++.+.+.+.|.|-.
T Consensus 28 it~~ed~~-a~~~gaD~i-GfI-------f~~~SpR~V~~~~A~~i~~~~~~~~~~v~v~v~~~ei~~~i~~~~ld~vQL 98 (228)
T 4aaj_A 28 IKSLEELE-IVEKHADAT-GVV-------VNSNSKRRIPLEKAREIIENSAIPVFLVSTMVGFSEWAMAIERTGAQYIQV 98 (228)
T ss_dssp CCSHHHHH-HHHTTCSEE-EEE-------CSSSSTTBCCHHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHTCSEEEE
T ss_pred CCcHHHHH-HHHcCCCEE-EEE-------ecCCCCCCCCHHHHHHHHHhhCCCCEEEeccCchHHHHHHHHhccchheec
Confidence 57788776 568899987 321 011233444578888887766666543 33333345567778899999854
Q ss_pred CCCCCchhHHHHHHhcCCCCcEEEecCC-----HHHHHH----HHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEee
Q 021609 121 SEVLTPADEENHINKHNFRIPFVCGCRN-----LGEALR----RIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 121 ~~~~~~~~~~~~i~~~~~~i~~~v~~~t-----~~ea~~----~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
....++..+..+-+..+..++-...+.+ .+++.+ .....+|++-+..++++|.
T Consensus 99 HG~E~~~~~~~l~~~~~~~viKa~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~GGtG~------------------ 160 (228)
T 4aaj_A 99 HSNALPQTIDTLKKEFGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTGAGSGK------------------ 160 (228)
T ss_dssp CSCCCHHHHHHHHHHHCCEEEEEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC------------------------
T ss_pred ccccCHHHHHHHhhccCceEEEEEEecccccchhhhHHHHHHHHhccCCCEEccCCCCCCcC------------------
Confidence 4444444443332222222221122221 122222 2344678876655444442
Q ss_pred cccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccC--CCHHHHHHHH
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS--GDPVKRAQAI 268 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a--~dp~~~a~~l 268 (310)
.-+|++++.+.. +.|++ .+||+ +++++.++++ .++.||=|.|.+=.. .||. ..++|
T Consensus 161 ---------------~fDW~~~~~~~~--~~p~i--LAGGL-~peNV~~Ai~~~~P~gVDVsSGVEs~G~KD~~-KI~~F 219 (228)
T 4aaj_A 161 ---------------LHDLRVSSLVAR--KIPVI--VAGGL-NAENVEEVIKVVKPYGVDVSSGVEKYGIKDPK-LVEEF 219 (228)
T ss_dssp ----------------CCCHHHHHHHH--HSCEE--EESSC-CTTTHHHHHHHHCCSEEEESGGGEETTEECHH-HHHHH
T ss_pred ---------------cCChHHHHHhhh--cCCeE--EECCC-CHHHHHHHHHHhCCCEEEeCCCCCCCCCcCHH-HHHHH
Confidence 224566665543 36888 47999 7999999985 799999999999743 2664 44557
Q ss_pred HHHHhc
Q 021609 269 VRAVTH 274 (310)
Q Consensus 269 ~~~i~~ 274 (310)
++.+++
T Consensus 220 i~~vr~ 225 (228)
T 4aaj_A 220 VRRAKN 225 (228)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777654
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=8.5e-06 Score=87.59 Aligned_cols=119 Identities=17% Similarity=0.136 Sum_probs=74.8
Q ss_pred cCCCEEEeC--CC-CCchhH---HHHHHhcCCCCcEEEec----CCHHHHHHHHHhCCCEEEEcCCC-CCcchHHHHHHH
Q 021609 113 IGIDYVDES--EV-LTPADE---ENHINKHNFRIPFVCGC----RNLGEALRRIREGAAMIRTKGEA-GTGNIIEAVRHV 181 (310)
Q Consensus 113 aGad~Vi~~--~~-~~~~~~---~~~i~~~~~~i~~~v~~----~t~~ea~~~~~~Gad~V~v~g~~-~~~~~~~~~~~~ 181 (310)
.|++.+.-. .+ .++.++ ++.+++..++.++++-. ....+|..+.++|+|.|.+.|.. +++..
T Consensus 961 ~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgas------- 1033 (1479)
T 1ea0_A 961 PGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGAS------- 1033 (1479)
T ss_dssp TTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSE-------
T ss_pred CCCCccCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCC-------
Confidence 677776411 12 233433 44444433455654442 24678888899999999998874 33210
Q ss_pred HhhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhc-------CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQL-------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~-------~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
-+.. ....+ +....+.++.+. .++||+ ++|||++..|+.+++.+||++|.+|+
T Consensus 1034 --------p~~~---------~~~~G~Pt~~aL~ev~~al~~~glr~~VpVI--AdGGIrtG~DVakALaLGAdaV~iGT 1094 (1479)
T 1ea0_A 1034 --------PQTS---------IKFAGLPWEMGLSEVHQVLTLNRLRHRVRLR--TDGGLKTGRDIVIAAMLGAEEFGIGT 1094 (1479)
T ss_dssp --------ETTH---------HHHSCCCHHHHHHHHHHHHHTTTCTTTSEEE--EESSCCSHHHHHHHHHTTCSEEECCH
T ss_pred --------chhh---------hcCCchhHHHHHHHHHHHHHHcCCCCCceEE--EECCCCCHHHHHHHHHcCCCeeeEcH
Confidence 0000 00112 223445444442 269998 78999999999999999999999999
Q ss_pred cccc
Q 021609 254 GVFK 257 (310)
Q Consensus 254 ai~~ 257 (310)
+++.
T Consensus 1095 afL~ 1098 (1479)
T 1ea0_A 1095 ASLI 1098 (1479)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9965
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.9e-05 Score=69.89 Aligned_cols=48 Identities=15% Similarity=0.152 Sum_probs=43.5
Q ss_pred CcHHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 208 APYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 208 ~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
...+.++++++.. ++|++ .+|||+|++++.+++++|||+|+|||++++
T Consensus 212 v~~e~V~~I~~~~~~~iPV~--vGGGIrs~Eda~~ll~aGAD~VVVGSAav~ 261 (286)
T 3vk5_A 212 VPPEVVRHFRKGLGPDQVLF--VSGNVRSGRQVTEYLDSGADYVGFAGALEQ 261 (286)
T ss_dssp CCHHHHHHHHHHSCTTCEEE--EESSCCSHHHHHHHHHTTCSEEEESGGGSS
T ss_pred CCHHHHHHHHHhcCCCCCEE--EEeCCCCHHHHHHHHHcCCCEEEECchhhc
Confidence 3467888888877 89998 689999999999999999999999999997
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00018 Score=62.94 Aligned_cols=151 Identities=9% Similarity=0.103 Sum_probs=88.6
Q ss_pred HHHHHHHHhhcCc-ceeeccccCcH-HHHHHHHHcCC--CEEEeCCCCC----chhHHHHHHhcCCCCcEEEecCC----
Q 021609 81 PQLIKEIKQSVTI-PVMAKARIGHF-VEAQILEAIGI--DYVDESEVLT----PADEENHINKHNFRIPFVCGCRN---- 148 (310)
Q Consensus 81 ~~~i~~i~~~~~i-Pv~vk~~~~~~-~~a~~~~~aGa--d~Vi~~~~~~----~~~~~~~i~~~~~~i~~~v~~~t---- 148 (310)
++.++++++..+. +++....+.+. ..+..+.+.-+ |.+..+.... ...+.+..++.+.++.++.+..+
T Consensus 41 ~~~v~~L~~~~~~~~VflDlK~~DI~nTv~~~~~~~~~~d~vTVh~~~G~~~~~~~a~~~~~~~~~~v~vLts~s~~~~~ 120 (222)
T 4dbe_A 41 VDKTRELLIGLDVEEIIVDFKLADIGYIMKSIVERLSFANSFIAHSFIGVKGSLDELKRYLDANSKNLYLVAVMSHEGWS 120 (222)
T ss_dssp HHHHHHHHHTCCCSEEEEEEEECSCHHHHHHHHTTCTTCSEEEEESTTCTTTTHHHHHHHHHHTTCEEEEEEECSSTTCC
T ss_pred HHHHHHHHHhcCCCeEEEEeeecchHHHHHHHHHHHHhCCEEEEEcCcCcHHHHHHHHHHHHhcCCcEEEEEeCCCcchH
Confidence 6778888775578 88887655431 23333333222 8875332222 33444444333334444444433
Q ss_pred ----HHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCC
Q 021609 149 ----LGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLP 223 (310)
Q Consensus 149 ----~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iP 223 (310)
..-+..+.+.|++.+.+.+. .+ +.++.+++. .+ .
T Consensus 121 ~~~~~~~a~~a~~~g~~GvV~sat---------------------------------------~p-~e~~~ir~~~~~-~ 159 (222)
T 4dbe_A 121 TLFADYIKNVIREISPKGIVVGGT---------------------------------------KL-DHITQYRRDFEK-M 159 (222)
T ss_dssp CTTHHHHHHHHHHHCCSEEEECTT---------------------------------------CH-HHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHHHHhCCCEEEECCC---------------------------------------CH-HHHHHHHHhCCC-C
Confidence 23344455678776654321 01 123334432 23 3
Q ss_pred EEEeCCCCCCCHH--HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 224 VVHFAAGGVATPA--DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 224 Vi~iA~GGI~t~~--d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
++ ...||+ +. +..++++.|+|.++|||+|++++||...++++.+.++++
T Consensus 160 ~~--vtPGI~-~~g~tp~~a~~~Gad~iVVGR~I~~A~dP~~aa~~i~~~i~~~ 210 (222)
T 4dbe_A 160 TI--VSPGMG-SQGGSYGDAVCAGADYEIIGRSIYNAGNPLTALRTINKIIEDK 210 (222)
T ss_dssp EE--EECCBS-TTSBCTTHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred EE--EcCCcc-cCccCHHHHHHcCCCEEEECHHhcCCCCHHHHHHHHHHHHHHH
Confidence 33 257885 33 566678899999999999999999999999999988754
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00018 Score=61.42 Aligned_cols=165 Identities=16% Similarity=0.133 Sum_probs=94.8
Q ss_pred CcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc---CcHHHH-HHHH
Q 021609 36 GGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI---GHFVEA-QILE 111 (310)
Q Consensus 36 ~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~---~~~~~a-~~~~ 111 (310)
...|..+.+.+..+.+.+..+..++.|+ | ......+.+++++++...+++--+.+ +..+.+ +-+.
T Consensus 10 ~piI~Avr~~~~l~~al~s~~~~ifll~----------g-~i~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~d~~ai~fL~ 78 (192)
T 3kts_A 10 QSIIPAAHNQKDMEKILELDLTYMVMLE----------T-HVAQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLC 78 (192)
T ss_dssp CCEEEEESSSHHHHHHTTSSCCEEEECS----------E-ETTTHHHHHHHHHHTTCEEEEEGGGEETCCCSHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHcCCCCEEEEec----------C-cHHHHHHHHHHHHHcCCeEEEecCchhccCCcHHHHHHHH
Confidence 4556667777777777777777765552 1 11223567778887776555533322 222333 3233
Q ss_pred H-cCCCEEEeCCCCCchhHHHHHHhcCCC-C--cEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 112 A-IGIDYVDESEVLTPADEENHINKHNFR-I--PFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 112 ~-aGad~Vi~~~~~~~~~~~~~i~~~~~~-i--~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
+ .++|+++.+.. ...+..++.+.. + .+++|..+.+ +.++.+++...+
T Consensus 79 ~~~~pdGIIsTk~----~~i~~Ak~~gL~tIqR~FliDS~al~-------------------------~~~~~i~~~~PD 129 (192)
T 3kts_A 79 TEICPDGIISTRG----NAIMKAKQHKMLAIQRLFMIDSSAYN-------------------------KGVALIQKVQPD 129 (192)
T ss_dssp HTTCCSEEEESCH----HHHHHHHHTTCEEEEEEECCSHHHHH-------------------------HHHHHHHHHCCS
T ss_pred hCCCCCEEEeCcH----HHHHHHHHCCCeEEEEEEEEEcchHH-------------------------HHHHHHhhcCCC
Confidence 3 58888875542 233344333321 1 1112222212 223333222222
Q ss_pred -eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 188 -IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 188 -~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
+.++|. ...+.++++++..++|++ |+|+|++.+|+.+++++||++|..++.-+
T Consensus 130 ~iEiLPG--------------i~p~iI~~i~~~~~~PiI--aGGlI~~~edv~~al~aGA~aVsTs~~~L 183 (192)
T 3kts_A 130 CIELLPG--------------IIPEQVQKMTQKLHIPVI--AGGLIETSEQVNQVIASGAIAVTTSNKHL 183 (192)
T ss_dssp EEEEECT--------------TCHHHHHHHHHHHCCCEE--EESSCCSHHHHHHHHTTTEEEEEECCGGG
T ss_pred EEEECCc--------------hhHHHHHHHHHhcCCCEE--EECCcCCHHHHHHHHHcCCeEEEeCCHHH
Confidence 222221 113578888888899998 89999999999999999999999987644
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=97.94 E-value=6.7e-05 Score=65.42 Aligned_cols=60 Identities=27% Similarity=0.418 Sum_probs=47.2
Q ss_pred HHHHhhc-CCCCEEEeCCCCCCCHH--HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 213 VMQTKQL-GRLPVVHFAAGGVATPA--DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 213 i~~i~~~-~~iPVi~iA~GGI~t~~--d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
++.+++. .+ .++ ..+||+ ++ +..++++.|+|.+++||+|++++||...++++.+.++++.
T Consensus 142 ~~~ir~~~~~-f~~--v~pGI~-~~g~~~~~a~~~Gad~iVvGr~I~~a~dp~~a~~~i~~~i~~~~ 204 (215)
T 3ve9_A 142 ISRVKGDFPD-KLV--ISPGVG-TQGAKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQEEVL 204 (215)
T ss_dssp HHHHHHHCTT-SEE--EECCTT-STTCCTTHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCC-cEE--EcCCCC-cCcCCHHHHHHcCCCEEEeCHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3445443 34 454 369996 55 6778889999999999999999999999999999887654
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0001 Score=66.00 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=36.2
Q ss_pred HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 238 AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
..++.++|+|.+++||+|++++||...++++++.++.+..
T Consensus 202 ~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i~~~~~~~~~ 241 (259)
T 3tfx_A 202 PKMAKEWGSSAIVVGRPITLASDPKAAYEAIKKEFNAENL 241 (259)
T ss_dssp HHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 7778899999999999999999999999999999887654
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.4e-05 Score=67.59 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=30.2
Q ss_pred HHHHHHhh--cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 211 DLVMQTKQ--LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 211 ~~i~~i~~--~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.+++++.+ ..++||. ++|||++.+|+.+++++||+-+-..
T Consensus 222 ~lmr~~v~~~g~~v~VK--AAGGIrt~edAl~mi~aGA~RiGtS 263 (288)
T 3oa3_A 222 SLMSAVCDSLQSETRVK--ASGGIRTIEDCVKMVRAGAERLGAS 263 (288)
T ss_dssp HHHHHHHHHSSSCCEEE--EESSCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHhCCCceEE--EeCCCCCHHHHHHHHHcCCceeehh
Confidence 34444442 2468898 7999999999999999999955433
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.1e-05 Score=70.02 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=66.8
Q ss_pred hhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINKHNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
.+..+.+++..+. ..+.+++.|.+++..+.+.|+|+|.+.... + +.+
T Consensus 169 ~~ai~~~r~~~~~~~~i~vev~tlee~~~A~~aGaD~I~ld~~~----~----------------------~~l------ 216 (273)
T 2b7n_A 169 KSFLTHARKNLPFTAKIEIECESFEEAKNAMNAGADIVMCDNLS----V----------------------LET------ 216 (273)
T ss_dssp HHHHHHHGGGSCTTCCEEEEESSHHHHHHHHHHTCSEEEEETCC----H----------------------HHH------
T ss_pred HHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEECCCC----H----------------------HHH------
Confidence 3445555553333 678999999999999999999999986421 0 000
Q ss_pred cCCcHHHHHHHh-hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 206 IAAPYDLVMQTK-QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 206 ~~~~~~~i~~i~-~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+..+.+. ...++|+. ++||| +++++.++.++|+|++.+|+.++.++
T Consensus 217 ----~~~v~~l~~~~~~~~i~--AsGGI-~~~ni~~~~~aGaD~i~vGs~i~~a~ 264 (273)
T 2b7n_A 217 ----KEIAAYRDAHYPFVLLE--ASGNI-SLESINAYAKSGVDAISVGALIHQAT 264 (273)
T ss_dssp ----HHHHHHHHHHCTTCEEE--EESSC-CTTTHHHHHTTTCSEEECTHHHHTCC
T ss_pred ----HHHHHHhhccCCCcEEE--EECCC-CHHHHHHHHHcCCcEEEEcHHhcCCC
Confidence 01122222 22457888 78999 89999999999999999999988643
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=2.3e-05 Score=71.19 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=67.7
Q ss_pred hhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 127 ADEENHINKHNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 127 ~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
....+.+++..+. ..+.+++.|.+++..+.++|+|+|.+.+.. ++++
T Consensus 180 ~~av~~ar~~~~~~~~I~VEV~tleea~eA~~aGaD~I~LDn~~--------------------------~e~l------ 227 (285)
T 1o4u_A 180 ERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNLS--------------------------PEEV------ 227 (285)
T ss_dssp HHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHTTCSEEEEESCC--------------------------HHHH------
T ss_pred HHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH------
Confidence 3445555554333 789999999999999999999999887531 1111
Q ss_pred cCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 206 IAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 206 ~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+.++.++. ..++|+. ++||| +++++.++.++|+|++.+|+.+..++
T Consensus 228 ----~~av~~l~~~~~~v~ie--ASGGI-t~eni~~~a~tGVD~IsvGslt~sa~ 275 (285)
T 1o4u_A 228 ----KDISRRIKDINPNVIVE--VSGGI-TEENVSLYDFETVDVISSSRLTLQEV 275 (285)
T ss_dssp ----HHHHHHHHHHCTTSEEE--EEECC-CTTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred ----HHHHHHhhccCCCceEE--EECCC-CHHHHHHHHHcCCCEEEEeHHHcCCC
Confidence 112222322 1257887 78999 79999999999999999999888754
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=4.4e-05 Score=68.13 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=25.3
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
.++||- ++|||+|.+|+.+++++||+-+-
T Consensus 215 ~~v~VK--aAGGIrt~~~al~mi~aGA~RiG 243 (260)
T 3r12_A 215 DEMGVK--ASGGIRTFEDAVKMIMYGADRIG 243 (260)
T ss_dssp TTSEEE--EESSCCSHHHHHHHHHTTCSEEE
T ss_pred CCceEE--EeCCCCCHHHHHHHHHcCCceee
Confidence 468888 78999999999999999999443
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=7.8e-05 Score=65.21 Aligned_cols=36 Identities=33% Similarity=0.520 Sum_probs=30.0
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCC--EEEEcccccc
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCD--GVFVGSGVFK 257 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~Gad--gV~VGsai~~ 257 (310)
.++||. ++|||++.+|+.+++++||+ |+..|..|++
T Consensus 175 ~~v~Vk--aaGGirt~~~al~~i~aGa~RiG~S~g~~I~~ 212 (220)
T 1ub3_A 175 GRAQVK--AAGGIRDRETALRMLKAGASRLGTSSGVALVA 212 (220)
T ss_dssp TSSEEE--EESSCCSHHHHHHHHHTTCSEEEETTHHHHHC
T ss_pred CCCeEE--EECCCCCHHHHHHHHHCCCcccchhHHHHHHH
Confidence 578998 78999999999999999999 6665555554
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=97.75 E-value=4e-05 Score=68.10 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=46.7
Q ss_pred HHHHHHHhhcC-CCCEEEeCCCCCCCHH-----------HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 210 YDLVMQTKQLG-RLPVVHFAAGGVATPA-----------DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 210 ~~~i~~i~~~~-~iPVi~iA~GGI~t~~-----------d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
.+ ++++++.. +.++. ..|||+ ++ ++.+++++|+|.+++||+|++++||...++++++.++
T Consensus 171 ~e-i~~lr~~~~~~~i~--v~gGI~-~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~i~ 242 (245)
T 1eix_A 171 QE-AVRFKQVFGQEFKL--VTPGIR-PQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242 (245)
T ss_dssp GG-HHHHHHHHCSSSEE--EECCBC-CTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHTC
T ss_pred HH-HHHHHHhcCCCCEE--EECCcC-CCCCCccchhccCCHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHH
Confidence 44 55555432 35666 369995 56 6888899999999999999999999999998887664
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00015 Score=66.14 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=64.1
Q ss_pred hhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc
Q 021609 127 ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI 206 (310)
Q Consensus 127 ~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~ 206 (310)
.+..+.+++..+...+.+++.|.+++..+.++|+|+|.+.+..
T Consensus 196 ~~ai~~~r~~~~~~kI~vev~tlee~~eA~~aGaD~I~ld~~~------------------------------------- 238 (296)
T 1qap_A 196 RQAVEKAFWLHPDVPVEVEVENLDELDDALKAGADIIMLDNFN------------------------------------- 238 (296)
T ss_dssp HHHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEESSCC-------------------------------------
T ss_pred HHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCCCEEEECCCC-------------------------------------
Confidence 3344444443333478889999999999999999999986421
Q ss_pred CCcHHHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 207 AAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 207 ~~~~~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++++.+. .++|+. ++||| +++++.++.++|+|++.+|+.+..+
T Consensus 239 ---~e~l~~~v~~~~~~~~I~--ASGGI-t~~~i~~~a~~GvD~isvGsli~~a 286 (296)
T 1qap_A 239 ---TDQMREAVKRVNGQARLE--VSGNV-TAETLREFAETGVDFISVGALTKHV 286 (296)
T ss_dssp ---HHHHHHHHHTTCTTCCEE--ECCCS-CHHHHHHHHHTTCSEEECSHHHHEE
T ss_pred ---HHHHHHHHHHhCCCCeEE--EECCC-CHHHHHHHHHcCCCEEEEeHHHcCC
Confidence 1112222222 257887 79999 8999999999999999999977653
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=97.73 E-value=8.2e-05 Score=65.81 Aligned_cols=59 Identities=19% Similarity=0.324 Sum_probs=47.5
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.++.++++++..++|++ ..|||.+++++.+++++|||+|++|++.+. +|.... ++.+.+
T Consensus 62 ~~~~i~~i~~~~~ipvi--~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~--~p~~~~-~~~~~~ 120 (253)
T 1thf_D 62 MLELVEKVAEQIDIPFT--VGGGIHDFETASELILRGADKVSINTAAVE--NPSLIT-QIAQTF 120 (253)
T ss_dssp HHHHHHHHHTTCCSCEE--EESSCCSHHHHHHHHHTTCSEEEESHHHHH--CTHHHH-HHHHHH
T ss_pred cHHHHHHHHHhCCCCEE--EeCCCCCHHHHHHHHHcCCCEEEEChHHHh--ChHHHH-HHHHHc
Confidence 35678888887899998 579999999999999999999999999997 564333 344443
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.002 Score=61.99 Aligned_cols=232 Identities=20% Similarity=0.221 Sum_probs=138.8
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHH
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFV 105 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~ 105 (310)
...+..+.--.+.++.+.+.+.++.+.|++.| ..|. |...+ +..+++...++.+.. +++++.--++...+
T Consensus 150 ~~~a~~lgm~~LvEvh~~eE~~~A~~lga~iI-Ginn-----r~L~t--~~~dl~~~~~L~~~ip~~~~vIaEsGI~t~e 221 (452)
T 1pii_A 150 AAVAHSLEMGVLTEVSNEEEQERAIALGAKVV-GINN-----RDLRD--LSIDLNRTRELAPKLGHNVTVISESGINTYA 221 (452)
T ss_dssp HHHHHHTTCEEEEEECSHHHHHHHHHTTCSEE-EEES-----EETTT--TEECTHHHHHHHHHHCTTSEEEEESCCCCHH
T ss_pred HHHHHHcCCeEEEEeCCHHHHHHHHHCCCCEE-EEeC-----CCCCC--CCCCHHHHHHHHHhCCCCCeEEEECCCCCHH
Confidence 34455554456889999999999999999965 5541 11111 122356666665554 66777777776778
Q ss_pred HHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcc---hHHHHHHH
Q 021609 106 EAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGN---IIEAVRHV 181 (310)
Q Consensus 106 ~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~---~~~~~~~~ 181 (310)
+++.+.++ +|+|+ ++..+.+.+....++..-.+..=+++.++.+++..+.++|+|+++..-...++. +.++.+.+
T Consensus 222 dv~~~~~~-a~avLVGealmr~~d~~~~~~~l~~~~~KICGit~~eda~~a~~~Gad~iGfIf~~~SpR~V~~~~a~~i~ 300 (452)
T 1pii_A 222 QVRELSHF-ANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVM 300 (452)
T ss_dssp HHHHHTTT-CSEEEECHHHHTCSCHHHHHHHHHHCSCEECCCCSHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHH
T ss_pred HHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHHHHhccccCCCcHHHHHHHHhcCCCEEEeecCCCCCCCCCHHHHHHHH
Confidence 99999999 99997 333333333333333311234456788999999999999999998553322222 12222222
Q ss_pred Hhhc-cceEeecccChhHHHHhhh--------------------------------------------------------
Q 021609 182 RSVM-GDIRVLRNMDDDEVFTFAK-------------------------------------------------------- 204 (310)
Q Consensus 182 r~~~-~~~~~l~~~~~d~~~~~~~-------------------------------------------------------- 204 (310)
+... ..+.+|-+.+.+.+.+.+.
T Consensus 301 ~~~~v~~VgVFvn~~~~~i~~~~~~~~ld~vQLHG~E~~~~~~~l~~~~p~~~~iika~~v~~~~~~~~~~~~d~~LlD~ 380 (452)
T 1pii_A 301 AAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDN 380 (452)
T ss_dssp HHCCCEEEEEESSCCHHHHHHHHHHHTCSEEEECSCCCHHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEES
T ss_pred hcCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCcEEEEEecCCccchhhhhcccEEEecC
Confidence 2211 1144444444333332100
Q ss_pred ---ccCC--cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC---CCHHHHHHHHHHHHhcc
Q 021609 205 ---KIAA--PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS---GDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 205 ---~~~~--~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a---~dp~~~a~~l~~~i~~~ 275 (310)
+.+. +|.+ +....+.|++ .+||+ +++++.++++.++.||=|.|.+=.+ +|+.+ .++|++.++.|
T Consensus 381 ~~GGtG~~fdW~~---l~~~~~~p~i--LAGGL-~p~NV~~ai~~~p~gvDvsSGVE~~pG~KD~~k-i~~f~~~~r~~ 452 (452)
T 1pii_A 381 GQGGSGQRFDWSL---LNGQSLGNVL--LAGGL-GADNCVEAAQTGCAGLDFNSAVESQPGIKDARL-LASVFQTLRAY 452 (452)
T ss_dssp CSCCSSCCCCGGG---GTTSCCTTEE--EESSC-CTTTHHHHHTTCCSEEEECGGGEEETTEECHHH-HHHHHHHHHCC
T ss_pred CCCCCCCccCHHH---hhcccCCcEE--EEcCC-CHHHHHHHHhcCCCEEEeCCceeCCCCCCCHHH-HHHHHHHHhhC
Confidence 0000 1222 1222246888 47999 7999998888999999999999754 37654 44577777643
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00023 Score=66.70 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=37.1
Q ss_pred HHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 212 LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 212 ~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
+.+.+++..+.|++ .||+.+++++.++++.| ||.|.+|++++. ||.
T Consensus 277 ~a~~ik~~~~~~v~---~~g~~~~~~ae~~l~~G~aD~V~~gR~~la--dPd 323 (358)
T 4a3u_A 277 LSPEIRKVFKPPLV---LNQDYTFETAQAALDSGVADAISFGRPFIG--NPD 323 (358)
T ss_dssp CHHHHHHHCCSCEE---EESSCCHHHHHHHHHHTSCSEEEESHHHHH--CTT
T ss_pred HHHHHHHhcCCcEE---EeCCCCHHHHHHHHHcCCceEeHhhHHHHh--Chh
Confidence 34456666677876 37778999999999988 999999999998 665
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=63.16 Aligned_cols=55 Identities=11% Similarity=0.111 Sum_probs=38.7
Q ss_pred HHHHhhcCCCCEEEeCCCCCCCHHH----------HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 213 VMQTKQLGRLPVVHFAAGGVATPAD----------AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 213 i~~i~~~~~iPVi~iA~GGI~t~~d----------~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
++.+++....|++ .+||+ +.. ..+ +++|+|++++||+|++++||...++++.+.+
T Consensus 148 ~~~ir~~~~~~~v---~pGI~-~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a~dP~~aa~~i~~~i 212 (213)
T 1vqt_A 148 AKALREKIKGKIL---VPGIR-MEVKADDQKDVVTLEE-MKGIANFAVLGREIYLSENPREKIKRIKEMR 212 (213)
T ss_dssp HHHHTTTCCSCEE---ECCBC----------CCBCHHH-HTTTCSEEEESHHHHTSSCHHHHHHHHTC--
T ss_pred HHHHHHHCCCCEE---ECCCC-CCCCccchhhcCCHHH-HHCCCCEEEEChhhcCCCCHHHHHHHHHHHh
Confidence 4445554444633 47885 433 577 8999999999999999999999988876543
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=8.7e-05 Score=65.59 Aligned_cols=49 Identities=29% Similarity=0.439 Sum_probs=43.7
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
++.++++++..++|++ +.|||++++++.+++++|||+|++|+.++. +|.
T Consensus 64 ~~~i~~i~~~~~iPvi--~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~--~p~ 112 (252)
T 1ka9_F 64 LDVVARVAERVFIPLT--VGGGVRSLEDARKLLLSGADKVSVNSAAVR--RPE 112 (252)
T ss_dssp HHHHHHHHTTCCSCEE--EESSCCSHHHHHHHHHHTCSEEEECHHHHH--CTH
T ss_pred HHHHHHHHHhCCCCEE--EECCcCCHHHHHHHHHcCCCEEEEChHHHh--CcH
Confidence 5678888888899999 579999999999999999999999999996 564
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=64.54 Aligned_cols=32 Identities=31% Similarity=0.371 Sum_probs=26.7
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
.+++|. ++|||+|.+|+.+++++||+-+-..+
T Consensus 199 ~~v~VK--asGGIrt~~da~~~i~aGA~riGtS~ 230 (239)
T 3ngj_A 199 DKALVK--AAGGIRTFDDAMKMINNGASRIGASA 230 (239)
T ss_dssp GGSEEE--EESSCCSHHHHHHHHHTTEEEEEESC
T ss_pred CCceEE--EeCCCCCHHHHHHHHHhcccceeccc
Confidence 367888 79999999999999999999554443
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00015 Score=64.62 Aligned_cols=54 Identities=19% Similarity=0.261 Sum_probs=43.3
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc-cCCCHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF-KSGDPV 262 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~-~a~dp~ 262 (310)
+..++.++++++..++|++ +.|||++++++.+++++|||+|++|++++ ...+|.
T Consensus 60 g~~~~~i~~i~~~~~iPvi--~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~~~~~~~ 114 (266)
T 2w6r_A 60 GYDTEMIRFVRPLTTLPII--ASGGAGKMEHFLEAFLAGADKALAASVFHFREIDMR 114 (266)
T ss_dssp CCCHHHHHHHGGGCCSCEE--EESCCCSTHHHHHHHHHTCSEEECCCCC------CH
T ss_pred cccHHHHHHHHHhcCCCEE--EECCCCCHHHHHHHHHcCCcHhhhhHHHHhCCCCHH
Confidence 3457888889888899998 57999999999999999999999999999 322554
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=97.66 E-value=5.9e-05 Score=66.34 Aligned_cols=29 Identities=38% Similarity=0.512 Sum_probs=25.3
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
.+++|- ++|||+|.+|+.+++++||+-+-
T Consensus 189 ~~v~VK--aaGGIrt~~~a~~~i~aGa~RiG 217 (231)
T 3ndo_A 189 ERLGVK--ASGGIRTAEQAAAMLDAGATRLG 217 (231)
T ss_dssp TTSEEE--EESSCCSHHHHHHHHHTTCSEEE
T ss_pred CCceEE--EeCCCCCHHHHHHHHHhcchhcc
Confidence 468888 78999999999999999999443
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=97.65 E-value=6.2e-05 Score=68.88 Aligned_cols=92 Identities=18% Similarity=0.221 Sum_probs=65.1
Q ss_pred HHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC
Q 021609 129 EENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA 207 (310)
Q Consensus 129 ~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~ 207 (310)
..+.+++ .+....+.+++.|.+++..+.+.|+|+|.+.... + +.+
T Consensus 186 ai~~~r~~~~~~~~i~vev~tlee~~~A~~aGaD~I~ld~~~----~----------------------~~l-------- 231 (299)
T 2jbm_A 186 AVRAARQAADFALKVEVECSSLQEAVQAAEAGADLVLLDNFK----P----------------------EEL-------- 231 (299)
T ss_dssp HHHHHHHHHTTTSCEEEEESSHHHHHHHHHTTCSEEEEESCC----H----------------------HHH--------
T ss_pred HHHHHHHhCCcCCeEEEecCCHHHHHHHHHcCCCEEEECCCC----H----------------------HHH--------
Confidence 3344444 3334788999999999999999999999986521 0 000
Q ss_pred CcHHHHHHHh-hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 208 APYDLVMQTK-QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 208 ~~~~~i~~i~-~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+..+.+. ...++|+. ++||| +++++.++.++|+|++.+|+.+..++
T Consensus 232 --~~~v~~l~~~~~~~~I~--ASGGI-t~~ni~~~~~aGaD~i~vGs~i~~a~ 279 (299)
T 2jbm_A 232 --HPTATVLKAQFPSVAVE--ASGGI-TLDNLPQFCGPHIDVISMGMLTQAAP 279 (299)
T ss_dssp --HHHHHHHHHHCTTSEEE--EESSC-CTTTHHHHCCTTCCEEECTHHHHSCC
T ss_pred --HHHHHHhhccCCCeeEE--EECCC-CHHHHHHHHHCCCCEEEEChhhcCCC
Confidence 01122222 22457888 78999 89999999999999999999887653
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00011 Score=65.19 Aligned_cols=63 Identities=14% Similarity=0.175 Sum_probs=47.1
Q ss_pred HHHHHHHhhcC-CCCEEEeCCCCCCCHH-----------HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 210 YDLVMQTKQLG-RLPVVHFAAGGVATPA-----------DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 210 ~~~i~~i~~~~-~iPVi~iA~GGI~t~~-----------d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.+ ++.+++.. ..++. ..|||+ ++ ++.+++++|+|.+++||+|++++||...++++++.++...
T Consensus 165 ~e-i~~lr~~~~~~~i~--V~gGI~-~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~i~~~~ 239 (246)
T 2yyu_A 165 NE-AAFIKERCGASFLA--VTPGIR-FADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWNGGE 239 (246)
T ss_dssp HH-HHHHHHHHCTTSEE--EECCCC-CCC-------CCCCHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHCC---
T ss_pred HH-HHHHHHhcCCCCEE--EeCCcC-CCCCCcccccccCCHHHHHHcCCCEEEECHhhcCCCCHHHHHHHHHHHHHHHH
Confidence 44 55565542 34555 369995 55 6888889999999999999999999999999988776443
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00016 Score=65.55 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=67.3
Q ss_pred hhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc
Q 021609 127 ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI 206 (310)
Q Consensus 127 ~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~ 206 (310)
.+.++..++..+...+.+++.|.+++..+.++|+|+|.+++.. ++++
T Consensus 182 ~~av~~ar~~~~~~~I~Vev~t~eea~eal~aGaD~I~LDn~~--------------------------~~~~------- 228 (284)
T 1qpo_A 182 VDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFA--------------------------VWQT------- 228 (284)
T ss_dssp HHHHHHHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEEETCC--------------------------HHHH-------
T ss_pred HHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH-------
Confidence 3455555554444488999999999999999999999887631 1111
Q ss_pred CCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 207 AAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 207 ~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+.++.++. ..++++. ++||| |++++.++.++|+|.+.+|+.+..++
T Consensus 229 ---~~~v~~l~~~~~~v~ie--aSGGI-t~~~i~~~a~tGVD~isvG~l~~~a~ 276 (284)
T 1qpo_A 229 ---QTAVQRRDSRAPTVMLE--SSGGL-SLQTAATYAETGVDYLAVGALTHSVR 276 (284)
T ss_dssp ---HHHHHHHHHHCTTCEEE--EESSC-CTTTHHHHHHTTCSEEECGGGTSSBC
T ss_pred ---HHHHHHhhccCCCeEEE--EECCC-CHHHHHHHHhcCCCEEEECHHHcCCC
Confidence 112333332 1346776 78999 79999999999999999999887654
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00067 Score=61.79 Aligned_cols=179 Identities=14% Similarity=0.173 Sum_probs=102.0
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc-C-Cc-cccccc--CCCCCCCCHHHHHHHHhhcCcceeeccccCc-------HHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE-R-VP-ADIRSQ--GGVARMSDPQLIKEIKQSVTIPVMAKARIGH-------FVE 106 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~-~-~~-~~~~~~--~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~-------~~~ 106 (310)
+...-|+-.|+.++++|++++ -+. . .. ...... +...+......++.|.+.+++||++..-.++ ...
T Consensus 21 ~~~a~D~~sA~~~~~aG~~ai-~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~~ 99 (295)
T 1xg4_A 21 IVGTINANHALLAQRAGYQAI-YLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVART 99 (295)
T ss_dssp EEECSSHHHHHHHHHTTCSCE-EECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHH
T ss_pred EecCcCHHHHHHHHHcCCCEE-EECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHHHH
Confidence 444557788999999999987 221 0 00 000000 0000111134666777888999999653332 355
Q ss_pred HHHHHHcCCCEEEeCCC--------------CCchhHHHHHHh---c--CCCCcEEEecCC---------HHHHHHHHHh
Q 021609 107 AQILEAIGIDYVDESEV--------------LTPADEENHINK---H--NFRIPFVCGCRN---------LGEALRRIRE 158 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~--------------~~~~~~~~~i~~---~--~~~i~~~v~~~t---------~~ea~~~~~~ 158 (310)
++.+.++||++|.+-+. .+..+....++. . ..+..+..-... .+.++...++
T Consensus 100 v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eA 179 (295)
T 1xg4_A 100 VKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEA 179 (295)
T ss_dssp HHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHc
Confidence 67788899999942111 122233333322 1 233434332222 2334455678
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCHHH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATPAD 237 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~~d 237 (310)
|+|.|.+++. ++.+.++++.+..++|+++ +..+|-...-+
T Consensus 180 GAd~i~~e~~---------------------------------------~~~~~~~~i~~~~~iP~~~N~~~~g~~p~~~ 220 (295)
T 1xg4_A 180 GAEMLFPEAI---------------------------------------TELAMYRQFADAVQVPILANITEFGATPLFT 220 (295)
T ss_dssp TCSEEEETTC---------------------------------------CSHHHHHHHHHHHCSCBEEECCSSSSSCCCC
T ss_pred CCCEEEEeCC---------------------------------------CCHHHHHHHHHHcCCCEEEEecccCCCCCCC
Confidence 9999988652 1244566676666789863 22344332345
Q ss_pred HHHHHHcCCCEEEEcccccc
Q 021609 238 AAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~~ 257 (310)
..++-++|++.|++|...++
T Consensus 221 ~~eL~~~G~~~v~~~~~~~~ 240 (295)
T 1xg4_A 221 TDELRSAHVAMALYPLSAFR 240 (295)
T ss_dssp HHHHHHTTCSEEEESSHHHH
T ss_pred HHHHHHcCCCEEEEChHHHH
Confidence 66767899999999999986
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00018 Score=65.14 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=67.3
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+.++.+++..+..++.+++.|.+|+..+.++|+|+|.+.+.. ++++
T Consensus 185 i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~aGaD~I~LDn~~--------------------------~~~l------ 232 (287)
T 3tqv_A 185 IAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAAKADIVMLDNFS--------------------------GEDI------ 232 (287)
T ss_dssp HHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHTTCSEEEEESCC--------------------------HHHH------
T ss_pred HHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHcCCCEEEEcCCC--------------------------HHHH------
Confidence 44555666655567889999999999999999999999886531 1111
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.+. .++++. ++||| +++++.++.++|+|.+.+|+....+
T Consensus 233 ----~~av~~~~--~~v~ie--aSGGI-t~~~i~~~a~tGVD~IsvGalt~sa 276 (287)
T 3tqv_A 233 ----DIAVSIAR--GKVALE--VSGNI-DRNSIVAIAKTGVDFISVGAITKHI 276 (287)
T ss_dssp ----HHHHHHHT--TTCEEE--EESSC-CTTTHHHHHTTTCSEEECSHHHHSB
T ss_pred ----HHHHHhhc--CCceEE--EECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence 11222232 256676 79999 7999999999999999998766553
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00012 Score=64.73 Aligned_cols=60 Identities=20% Similarity=0.222 Sum_probs=46.5
Q ss_pred HHHHHHhhcC-CCCEEEeCCCCCCCHHHH-----------HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 211 DLVMQTKQLG-RLPVVHFAAGGVATPADA-----------AMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 211 ~~i~~i~~~~-~iPVi~iA~GGI~t~~d~-----------~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+.++.+++.. +.++. ..|||+ ++.. .+++++|+|.+++||+|++++||...++++.+.++
T Consensus 164 ~~i~~lr~~~~~~~i~--v~gGI~-~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~i~ 235 (239)
T 1dbt_A 164 HEAKAIYQAVSPSFLT--VTPGIR-MSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWE 235 (239)
T ss_dssp GGHHHHTTTSCTTCEE--EECCBC-CTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEE--EeCCcC-CCCCCccceeccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHHHHHHH
Confidence 3345555543 35666 369995 5555 78889999999999999999999999999988775
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=8.7e-05 Score=67.71 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=55.5
Q ss_pred HHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC
Q 021609 129 EENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA 207 (310)
Q Consensus 129 ~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~ 207 (310)
..+.+++ .+....+.+++.|.+++..+.+.|+|+|.+..... .. +
T Consensus 188 ai~~~r~~~~~~~~i~vev~tlee~~~A~~aGaD~I~ld~~~~-~~-------l-------------------------- 233 (294)
T 3c2e_A 188 AVKNARAVCGFAVKIEVECLSEDEATEAIEAGADVIMLDNFKG-DG-------L-------------------------- 233 (294)
T ss_dssp HHHHHHHHHCTTSCEEEECSSSHHHHHHHHHTCSEEECCC----------------------------------------
T ss_pred HHHHHHHhcCcCCeEEEecCCHHHHHHHHHcCCCEEEECCCCH-HH-------H--------------------------
Confidence 3444444 33347888999999999999999999999864210 00 0
Q ss_pred CcHHHHHHHhh----cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 208 APYDLVMQTKQ----LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 208 ~~~~~i~~i~~----~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.+..+.+.. ..++|+. ++||| +++++.++.++|+|++.+|+.+..++
T Consensus 234 --~~~v~~l~~~~~g~~~v~I~--ASGGI-t~~ni~~~~~~GvD~i~vGs~i~~a~ 284 (294)
T 3c2e_A 234 --KMCAQSLKNKWNGKKHFLLE--CSGGL-NLDNLEEYLCDDIDIYSTSSIHQGTP 284 (294)
T ss_dssp -----------------CCEEE--EECCC-CC------CCCSCSEEECGGGTSSCC
T ss_pred --HHHHHHhcccccCCCCeEEE--EECCC-CHHHHHHHHHcCCCEEEEechhcCCC
Confidence 011111221 1237887 78999 89999999999999999999987643
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00018 Score=68.51 Aligned_cols=46 Identities=11% Similarity=-0.050 Sum_probs=35.8
Q ss_pred HHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc----CCCEEEEccccccCCCHH
Q 021609 213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQL----GCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 213 i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~----GadgV~VGsai~~a~dp~ 262 (310)
++.+++..++||| ++|||.+.+|+.++++. +||.|++|++++. ||.
T Consensus 305 ~~~ir~~~~~PvI--~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~ia--NPd 354 (407)
T 3tjl_A 305 NEFVSKIWKGVIL--KAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTS--NPN 354 (407)
T ss_dssp SHHHHHHCCSEEE--EESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHH--CTT
T ss_pred HHHHHHHhCCCEE--ecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhh--Cch
Confidence 3445555678998 78999888877777754 5999999999998 665
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00032 Score=61.78 Aligned_cols=33 Identities=30% Similarity=0.489 Sum_probs=27.3
Q ss_pred CCEEEeCCCCCCCHHHHHHHHHcCCC--EEEEccccc
Q 021609 222 LPVVHFAAGGVATPADAAMMMQLGCD--GVFVGSGVF 256 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l~~Gad--gV~VGsai~ 256 (310)
+||. ++|||++.+|+.+++++|++ |+..|..|+
T Consensus 193 v~VK--aaGGirt~~~al~~i~aGa~RiG~S~g~~I~ 227 (234)
T 1n7k_A 193 MGVK--ASGGIRSGIDAVLAVGAGADIIGTSSAVKVL 227 (234)
T ss_dssp CEEE--EESSCCSHHHHHHHHHTTCSEEEETTHHHHH
T ss_pred CCEE--EecCCCCHHHHHHHHHcCccccchHHHHHHH
Confidence 8998 78999999999999999999 655444444
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=97.49 E-value=6.2e-05 Score=66.29 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=44.0
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
...++.+++++ ..++|++ +.|||++++++.+++++|||+|++|++++. +|.
T Consensus 60 ~~~~~~i~~i~-~~~ipvi--~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~--~p~ 110 (241)
T 1qo2_A 60 GENLPVLEKLS-EFAEHIQ--IGGGIRSLDYAEKLRKLGYRRQIVSSKVLE--DPS 110 (241)
T ss_dssp CTTHHHHHHGG-GGGGGEE--EESSCCSHHHHHHHHHTTCCEEEECHHHHH--CTT
T ss_pred chhHHHHHHHH-hcCCcEE--EECCCCCHHHHHHHHHCCCCEEEECchHhh--ChH
Confidence 34577888888 6789998 579999999999999999999999999997 553
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0033 Score=61.06 Aligned_cols=112 Identities=22% Similarity=0.270 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCEEE-eCC------CCCchhHHHHHHh-c---C-CC-CcEEEec----CCHHHHHHHHHhCCCEEEEcC
Q 021609 105 VEAQILEAIGIDYVD-ESE------VLTPADEENHINK-H---N-FR-IPFVCGC----RNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi-~~~------~~~~~~~~~~i~~-~---~-~~-i~~~v~~----~t~~ea~~~~~~Gad~V~v~g 167 (310)
+.++.+.+.+.+.+. ... ..+..++.+.+.. . . .+ +.+...+ .+.+++.++.+.|+|.+.+++
T Consensus 174 ~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~G~d~ivi~~ 253 (491)
T 1zfj_A 174 TAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAGADAIVIDT 253 (491)
T ss_dssp HHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEECC
T ss_pred HHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHHcCCCeEEEee
Confidence 444666677777763 221 1234555555542 0 0 11 2222222 236788888889999988875
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCC
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGC 246 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~Ga 246 (310)
.. ++. ...++.++++++.. ++|++ .|+|.+.+++..++++|+
T Consensus 254 a~--g~~--------------------------------~~~~~~i~~l~~~~p~~pvi---~G~v~t~~~a~~~~~~Ga 296 (491)
T 1zfj_A 254 AH--GHS--------------------------------AGVLRKIAEIRAHFPNRTLI---AGNIATAEGARALYDAGV 296 (491)
T ss_dssp SC--TTC--------------------------------HHHHHHHHHHHHHCSSSCEE---EEEECSHHHHHHHHHTTC
T ss_pred ec--Ccc--------------------------------hhHHHHHHHHHHHCCCCcEe---CCCccCHHHHHHHHHcCC
Confidence 32 120 11245666676665 78997 489999999999999999
Q ss_pred CEEEEcc
Q 021609 247 DGVFVGS 253 (310)
Q Consensus 247 dgV~VGs 253 (310)
|+|.+|.
T Consensus 297 d~I~vg~ 303 (491)
T 1zfj_A 297 DVVKVGI 303 (491)
T ss_dssp SEEEECS
T ss_pred CEEEECc
Confidence 9999983
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0032 Score=55.34 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=83.8
Q ss_pred HHHHHHhhcCcceeeccccCc-HHHHHHHHHcCCCEEEe-CCCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhC
Q 021609 83 LIKEIKQSVTIPVMAKARIGH-FVEAQILEAIGIDYVDE-SEVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREG 159 (310)
Q Consensus 83 ~i~~i~~~~~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~-~~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~G 159 (310)
.++.+++.-=+||+....... .+.++.+.+.|++.+-. -......+.++.+++..+++.+.++ +.+.++++.+.++|
T Consensus 27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AG 106 (232)
T 4e38_A 27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAG 106 (232)
T ss_dssp HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcC
Confidence 445555544467775544332 45678899999999943 3333455666666654456767665 67899999999999
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
++++.. + .. +.+.++..++ .++|++ =|+.|++++.
T Consensus 107 A~fIvs-P-~~--------------------------------------~~~vi~~~~~-~gi~~i----pGv~TptEi~ 141 (232)
T 4e38_A 107 ATFVVS-P-GF--------------------------------------NPNTVRACQE-IGIDIV----PGVNNPSTVE 141 (232)
T ss_dssp CSEEEC-S-SC--------------------------------------CHHHHHHHHH-HTCEEE----CEECSHHHHH
T ss_pred CCEEEe-C-CC--------------------------------------CHHHHHHHHH-cCCCEE----cCCCCHHHHH
Confidence 999953 2 11 1223333333 367887 3788999999
Q ss_pred HHHHcCCCEEEE
Q 021609 240 MMMQLGCDGVFV 251 (310)
Q Consensus 240 ~~l~~GadgV~V 251 (310)
+++++|+|.|-+
T Consensus 142 ~A~~~Gad~vK~ 153 (232)
T 4e38_A 142 AALEMGLTTLKF 153 (232)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999999975
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00063 Score=61.87 Aligned_cols=92 Identities=18% Similarity=0.201 Sum_probs=64.6
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+..+.+++..+..++.+.+.|.++++.+.++|+|+|.+.+.. ++.+
T Consensus 196 i~~Av~~~r~~~p~~~ieVEvdtlde~~eAl~aGaD~I~LDn~~--------------------------~~~l------ 243 (298)
T 3gnn_A 196 VGEALDAAFALNAEVPVQIEVETLDQLRTALAHGARSVLLDNFT--------------------------LDMM------ 243 (298)
T ss_dssp HHHHHHHHHHHC--CCCEEEESSHHHHHHHHHTTCEEEEEESCC--------------------------HHHH------
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH------
Confidence 34555555554456788899999999999999999999886531 1110
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.+. .++++. ++||| +++++.++.++|+|.+.+|+....+
T Consensus 244 ----~~av~~i~--~~v~ie--aSGGI-~~~~i~~~a~tGVD~isvG~lt~sa 287 (298)
T 3gnn_A 244 ----RDAVRVTE--GRAVLE--VSGGV-NFDTVRAIAETGVDRISIGALTKDV 287 (298)
T ss_dssp ----HHHHHHHT--TSEEEE--EESSC-STTTHHHHHHTTCSEEECGGGGTSC
T ss_pred ----HHHHHHhC--CCCeEE--EEcCC-CHHHHHHHHHcCCCEEEECCeecCC
Confidence 11222222 345565 89999 7999999999999999999977654
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00036 Score=61.05 Aligned_cols=51 Identities=27% Similarity=0.455 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~ 264 (310)
.+.++++++..++|++ +.|||.+++++.+++++|||+|.+++.++. +|...
T Consensus 66 ~~~i~~i~~~~~ipvi--~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~--~~~~~ 116 (253)
T 1h5y_A 66 IDSVKRVAEAVSIPVL--VGGGVRSLEDATTLFRAGADKVSVNTAAVR--NPQLV 116 (253)
T ss_dssp HHHHHHHHHHCSSCEE--EESSCCSHHHHHHHHHHTCSEEEESHHHHH--CTHHH
T ss_pred HHHHHHHHHhcCCCEE--EECCCCCHHHHHHHHHcCCCEEEEChHHhh--CcHHH
Confidence 5567778777789998 679999999999999999999999999986 56533
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00054 Score=62.89 Aligned_cols=90 Identities=19% Similarity=0.174 Sum_probs=64.4
Q ss_pred hhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhcc
Q 021609 127 ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKI 206 (310)
Q Consensus 127 ~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~ 206 (310)
.+..+.+++..+..++.+.+.|.++++.+.++|+|+|.+.+.. ++.+
T Consensus 219 ~~Av~~ar~~~p~~kIeVEVdtldea~eAl~aGaD~I~LDn~~--------------------------~~~l------- 265 (320)
T 3paj_A 219 RQAISTAKQLNPGKPVEVETETLAELEEAISAGADIIMLDNFS--------------------------LEMM------- 265 (320)
T ss_dssp HHHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEEESCC--------------------------HHHH-------
T ss_pred HHHHHHHHHhCCCCeEEEEECCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH-------
Confidence 3455555554556788899999999999999999999886521 1110
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.+.++.+. .++++. ++||| +++++.++.++|+|.+.+|+....
T Consensus 266 ---~~av~~l~--~~v~ie--aSGGI-t~~~I~~~a~tGVD~isvGalt~s 308 (320)
T 3paj_A 266 ---REAVKINA--GRAALE--NSGNI-TLDNLKECAETGVDYISVGALTKH 308 (320)
T ss_dssp ---HHHHHHHT--TSSEEE--EESSC-CHHHHHHHHTTTCSEEECTHHHHS
T ss_pred ---HHHHHHhC--CCCeEE--EECCC-CHHHHHHHHHcCCCEEEECceecC
Confidence 11122222 356676 89999 799999999999999999986544
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0054 Score=55.81 Aligned_cols=179 Identities=15% Similarity=0.184 Sum_probs=101.4
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc--CCc-cccccc--CCCCCCCCHHHHHHHHhhcCcceeeccccCc------HHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE--RVP-ADIRSQ--GGVARMSDPQLIKEIKQSVTIPVMAKARIGH------FVEA 107 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~--~~~-~~~~~~--~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~------~~~a 107 (310)
+...-|+-.|+.++++|++++ .+. ... ...... +...+......++.|.+.+++||++..-.++ ...+
T Consensus 26 ~~~a~D~~sA~l~e~aGf~ai-~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~v~~~v 104 (298)
T 3eoo_A 26 VVGAITAYAAKMAEAVGFKAV-YLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWGGAFNIARTI 104 (298)
T ss_dssp EEECSSHHHHHHHHHHTCSCE-EECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSHHHHHHHH
T ss_pred EecCCCHHHHHHHHHcCCCEE-EECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCCCHHHHHHHH
Confidence 344557788999999999987 221 000 000000 0000111134667777888999999644442 3456
Q ss_pred HHHHHcCCCEEEeCC--------------CCCchhHHHHHHh-----cCCCCcEEEecCCH---------HHHHHHHHhC
Q 021609 108 QILEAIGIDYVDESE--------------VLTPADEENHINK-----HNFRIPFVCGCRNL---------GEALRRIREG 159 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~--------------~~~~~~~~~~i~~-----~~~~i~~~v~~~t~---------~ea~~~~~~G 159 (310)
+.+.++||.+|.+-+ ..+..+....++. .+.++.+++-+... +.++...++|
T Consensus 105 ~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AG 184 (298)
T 3eoo_A 105 RSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAG 184 (298)
T ss_dssp HHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcC
Confidence 788889999994111 1233344444422 12444454443332 2233345779
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATPADA 238 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~~d~ 238 (310)
+|.|.+.+.. +.+.++++++..++|+++ +..+|-...-+.
T Consensus 185 AD~if~~~~~---------------------------------------~~ee~~~~~~~~~~Pl~~n~~~~g~tp~~~~ 225 (298)
T 3eoo_A 185 ADMIFPEAMK---------------------------------------TLDDYRRFKEAVKVPILANLTEFGSTPLFTL 225 (298)
T ss_dssp CSEEEECCCC---------------------------------------SHHHHHHHHHHHCSCBEEECCTTSSSCCCCH
T ss_pred CCEEEeCCCC---------------------------------------CHHHHHHHHHHcCCCeEEEeccCCCCCCCCH
Confidence 9998876521 233455565555678753 234553222356
Q ss_pred HHHHHcCCCEEEEcccccc
Q 021609 239 AMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 239 ~~~l~~GadgV~VGsai~~ 257 (310)
.++-++|+.-|..|..+++
T Consensus 226 ~eL~~lGv~~v~~~~~~~r 244 (298)
T 3eoo_A 226 DELKGANVDIALYCCGAYR 244 (298)
T ss_dssp HHHHHTTCCEEEECSHHHH
T ss_pred HHHHHcCCeEEEEchHHHH
Confidence 6778899999999999997
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00064 Score=61.74 Aligned_cols=92 Identities=14% Similarity=0.113 Sum_probs=66.3
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+.++.+++..+...+.+.+.|.+|+..+.++|+|+|.+.+.. ++++
T Consensus 194 i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~aGaDiImLDn~s--------------------------~~~l------ 241 (300)
T 3l0g_A 194 ITLAIQRLRKNLKNEYIAIECDNISQVEESLSNNVDMILLDNMS--------------------------ISEI------ 241 (300)
T ss_dssp HHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHTTCSEEEEESCC--------------------------HHHH------
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHcCCCEEEECCCC--------------------------HHHH------
Confidence 34555556555566889999999999999999999999876531 1111
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.+. .++.+. ++||| |++++.++.++|+|.+.+|+....+
T Consensus 242 ----~~av~~~~--~~v~le--aSGGI-t~~~i~~~A~tGVD~IsvGalthsa 285 (300)
T 3l0g_A 242 ----KKAVDIVN--GKSVLE--VSGCV-NIRNVRNIALTGVDYISIGCITNSF 285 (300)
T ss_dssp ----HHHHHHHT--TSSEEE--EESSC-CTTTHHHHHTTTCSEEECGGGTSSC
T ss_pred ----HHHHHhhc--CceEEE--EECCC-CHHHHHHHHHcCCCEEEeCccccCC
Confidence 11233333 245565 89999 7999999999999999999766543
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00033 Score=61.52 Aligned_cols=56 Identities=21% Similarity=0.381 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
+.++++++..++|++ ..|||.+++++..++++|||+|++|+..+. +|....+ +.+.
T Consensus 64 ~~i~~i~~~~~ipv~--v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~--~p~~~~~-~~~~ 119 (244)
T 2y88_A 64 ELLAEVVGKLDVQVE--LSGGIRDDESLAAALATGCARVNVGTAALE--NPQWCAR-VIGE 119 (244)
T ss_dssp HHHHHHHHHCSSEEE--EESSCCSHHHHHHHHHTTCSEEEECHHHHH--CHHHHHH-HHHH
T ss_pred HHHHHHHHhcCCcEE--EECCCCCHHHHHHHHHcCCCEEEECchHhh--ChHHHHH-HHHH
Confidence 778888887889998 579999999999999999999999999986 6754333 4443
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00031 Score=61.82 Aligned_cols=52 Identities=23% Similarity=0.384 Sum_probs=44.6
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
+.++.+++..++|++ ..|||.+++++..++++|||+|.+|+..+. +|....+
T Consensus 65 ~~i~~i~~~~~ipv~--v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~--~p~~~~~ 116 (244)
T 1vzw_A 65 ALIAEVAQAMDIKVE--LSGGIRDDDTLAAALATGCTRVNLGTAALE--TPEWVAK 116 (244)
T ss_dssp HHHHHHHHHCSSEEE--EESSCCSHHHHHHHHHTTCSEEEECHHHHH--CHHHHHH
T ss_pred HHHHHHHHhcCCcEE--EECCcCCHHHHHHHHHcCCCEEEECchHhh--CHHHHHH
Confidence 678888887899998 579999999999999999999999999986 6754433
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0069 Score=52.85 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=83.4
Q ss_pred HHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIR 157 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~ 157 (310)
.+.+..+++.-=+||+...... ..+.++.+.+.|++.+- .-......+..+.+++..+++.+.++ +.+.+++..+.+
T Consensus 8 ~~~~~~l~~~~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~ 87 (224)
T 1vhc_A 8 QQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKS 87 (224)
T ss_dssp HHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHH
T ss_pred HHHHHHHHHCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHH
Confidence 3556666655556776554333 24667899999999994 33333344555544444446666665 457789999999
Q ss_pred hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHH
Q 021609 158 EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD 237 (310)
Q Consensus 158 ~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d 237 (310)
+|+|+|.. + .. +.+.++..++ ...|++ + |+.|+++
T Consensus 88 aGAd~v~~-p-~~--------------------------------------d~~v~~~ar~-~g~~~i-~---Gv~t~~e 122 (224)
T 1vhc_A 88 SGADFVVT-P-GL--------------------------------------NPKIVKLCQD-LNFPIT-P---GVNNPMA 122 (224)
T ss_dssp HTCSEEEC-S-SC--------------------------------------CHHHHHHHHH-TTCCEE-C---EECSHHH
T ss_pred CCCCEEEE-C-CC--------------------------------------CHHHHHHHHH-hCCCEE-e---ccCCHHH
Confidence 99999943 2 10 1222333444 567886 2 5999999
Q ss_pred HHHHHHcCCCEEEE
Q 021609 238 AAMMMQLGCDGVFV 251 (310)
Q Consensus 238 ~~~~l~~GadgV~V 251 (310)
+.++.+.|+|.|.+
T Consensus 123 ~~~A~~~Gad~vk~ 136 (224)
T 1vhc_A 123 IEIALEMGISAVKF 136 (224)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999988
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0036 Score=57.81 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=45.7
Q ss_pred HHHHhhcCCCCEEEeCCCCCCCHHHHH----HHHHcCC--CEEEEccccccCCCHHHHHHHHHHHHhccCChhh---hhh
Q 021609 213 VMQTKQLGRLPVVHFAAGGVATPADAA----MMMQLGC--DGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEV---LAE 283 (310)
Q Consensus 213 i~~i~~~~~iPVi~iA~GGI~t~~d~~----~~l~~Ga--dgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~---~~~ 283 (310)
.+++.+.+.+|+++ .+||. +.+++. .++++|| .||++||+++++. ....++.=.++..+|++.++ +.+
T Consensus 237 f~~~~~a~~~P~v~-lsgG~-~~~~fl~~v~~A~~aGa~f~Gv~~GRnvwq~~-v~~~~~~~~~~~~~~l~~~g~~~i~~ 313 (332)
T 3iv3_A 237 FREQEASTDLPYIY-LSAGV-SAELFQETLVFAHKAGAKFNGVLCGRATWAGS-VQVYMEEGKEAARQWLRTSGLQNINE 313 (332)
T ss_dssp HHHHHHTCSSCEEE-ECTTC-CHHHHHHHHHHHHHHTCCCCEEEECHHHHTTH-HHHHHHHCHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHhcCCCCEEE-ECCCC-CHHHHHHHHHHHHHcCCCcceEEeeHHHHHhh-hhhhccccHHHHHHHHHHHhHHHHHH
Confidence 45555667899875 48998 455544 4456899 9999999999832 22222222446667776444 344
Q ss_pred hhhhc
Q 021609 284 VSCGL 288 (310)
Q Consensus 284 ~~~~~ 288 (310)
|+..+
T Consensus 314 l~~v~ 318 (332)
T 3iv3_A 314 LNKVL 318 (332)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.011 Score=53.29 Aligned_cols=175 Identities=18% Similarity=0.170 Sum_probs=95.8
Q ss_pred ccCCCHHHHHHHHHcCCcEEEecc--CCccccccc--CCCCCCCCHHHHHHHHhhcCcceeeccccCc-------HHHHH
Q 021609 40 MDVVTPEQARVAEEAGACAVMALE--RVPADIRSQ--GGVARMSDPQLIKEIKQSVTIPVMAKARIGH-------FVEAQ 108 (310)
Q Consensus 40 ~~~~~~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~--~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~-------~~~a~ 108 (310)
...-|+-.|+.++++|++++ .+. ......... +...+......++.|.+.+++||++..-.++ ...++
T Consensus 21 ~~a~D~~sA~~~~~aG~~ai-~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~ 99 (275)
T 2ze3_A 21 PNAWDVASARLLEAAGFTAI-GTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVE 99 (275)
T ss_dssp CEESSHHHHHHHHHHTCSCE-EECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHH
T ss_pred ecccCHHHHHHHHHcCCCEE-EECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHH
Confidence 33456788999999999987 221 000000000 0000111134667777888999999744332 34567
Q ss_pred HHHHcCCCEEEeCCC--------CCchhHHHHHHh---c----CCCCcEEEecCC------------HHH----HHHHHH
Q 021609 109 ILEAIGIDYVDESEV--------LTPADEENHINK---H----NFRIPFVCGCRN------------LGE----ALRRIR 157 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~--------~~~~~~~~~i~~---~----~~~i~~~v~~~t------------~~e----a~~~~~ 157 (310)
.+.++||.+|.+-+. .+..+..+.++. . +....+..-... .++ ++...+
T Consensus 100 ~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~e 179 (275)
T 2ze3_A 100 HFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYAD 179 (275)
T ss_dssp HHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHH
Confidence 788899999952221 233334333332 1 222222221111 122 222334
Q ss_pred hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHH
Q 021609 158 EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD 237 (310)
Q Consensus 158 ~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d 237 (310)
+|+|.|.+.+ .++.+.++++.+..++|+.+....+.-+
T Consensus 180 AGAd~i~~e~---------------------------------------~~~~~~~~~i~~~~~~P~n~~~~~~~~~--- 217 (275)
T 2ze3_A 180 AGADGIFVPL---------------------------------------ALQSQDIRALADALRVPLNVMAFPGSPV--- 217 (275)
T ss_dssp TTCSEEECTT---------------------------------------CCCHHHHHHHHHHCSSCEEEECCTTSCC---
T ss_pred CCCCEEEECC---------------------------------------CCCHHHHHHHHHhcCCCEEEecCCCCCC---
Confidence 5666665543 1224567777777789987543334434
Q ss_pred HHHHHHcCCCEEEEcccccc
Q 021609 238 AAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~~ 257 (310)
..++-++|+.-|..+...++
T Consensus 218 ~~eL~~lGv~~v~~~~~~~r 237 (275)
T 2ze3_A 218 PRALLDAGAARVSFGQSLML 237 (275)
T ss_dssp HHHHHHTTCSEEECTTHHHH
T ss_pred HHHHHHcCCcEEEEChHHHH
Confidence 45667899999999998886
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.003 Score=56.29 Aligned_cols=35 Identities=17% Similarity=0.285 Sum_probs=30.7
Q ss_pred HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 238 AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
..+++++|+|.+++||+|++++||...++++++.+
T Consensus 220 ~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i~~ei 254 (255)
T 3ldv_A 220 PAQAIASGSDYLVIGRPITQAAHPEVVLEEINSSL 254 (255)
T ss_dssp HHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEECHHHhCCCCHHHHHHHHHHhh
Confidence 45668899999999999999999999998887654
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0046 Score=56.78 Aligned_cols=179 Identities=14% Similarity=0.066 Sum_probs=102.2
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccC--Cc-cccccc--CCCCCCCCHHHHHHHHhhc-CcceeeccccCc------HHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALER--VP-ADIRSQ--GGVARMSDPQLIKEIKQSV-TIPVMAKARIGH------FVE 106 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~--~~-~~~~~~--~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~------~~~ 106 (310)
+...-|+-.|+.++++|+++| -+.. .. ...... +-..+......++.|.+.+ ++||++..-.++ ...
T Consensus 43 ~~~ayD~~sA~i~e~aGfdai-~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~v~~t 121 (318)
T 1zlp_A 43 MPGVQDALSAAVVEKTGFHAA-FVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRF 121 (318)
T ss_dssp EEEECSHHHHHHHHHTTCSEE-EECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHH
T ss_pred EecCCCHHHHHHHHHcCCCEE-EECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHHHHHH
Confidence 445567788999999999987 2210 00 000000 0010111134666777788 999999754442 355
Q ss_pred HHHHHHcCCCEEEeCCC--------------CCchhHHHHHHh---c--CCCCcEEEecCCH---------HHHHHHHHh
Q 021609 107 AQILEAIGIDYVDESEV--------------LTPADEENHINK---H--NFRIPFVCGCRNL---------GEALRRIRE 158 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~--------------~~~~~~~~~i~~---~--~~~i~~~v~~~t~---------~ea~~~~~~ 158 (310)
++.+.++||.+|.+-+. .+..+..+.++. . ..+..+..-.... ++++...++
T Consensus 122 v~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eA 201 (318)
T 1zlp_A 122 IRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRRANLYKEA 201 (318)
T ss_dssp HHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHHHHc
Confidence 67888899999942111 122233323222 1 1334444332221 234445677
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCHHH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATPAD 237 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~~d 237 (310)
|+|.|.+.+. ++.+.++++.+..++|+++ +..+|-...-+
T Consensus 202 GAd~i~~e~~---------------------------------------~~~e~~~~i~~~l~~P~lan~~~~g~~~~~~ 242 (318)
T 1zlp_A 202 GADATFVEAP---------------------------------------ANVDELKEVSAKTKGLRIANMIEGGKTPLHT 242 (318)
T ss_dssp TCSEEEECCC---------------------------------------CSHHHHHHHHHHSCSEEEEEECTTSSSCCCC
T ss_pred CCCEEEEcCC---------------------------------------CCHHHHHHHHHhcCCCEEEEeccCCCCCCCC
Confidence 9998877541 1244567777777899853 23455322334
Q ss_pred HHHHHHcCCCEEEEcccccc
Q 021609 238 AAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~~ 257 (310)
..++-++|+.-|..+..+++
T Consensus 243 ~~eL~~lGv~~v~~~~~~~r 262 (318)
T 1zlp_A 243 PEEFKEMGFHLIAHSLTAVY 262 (318)
T ss_dssp HHHHHHHTCCEEEECSHHHH
T ss_pred HHHHHHcCCeEEEEchHHHH
Confidence 66668899999999999886
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.009 Score=50.57 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=31.3
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
+.++++ .++|++ |+|+|++.+|+.+ +++||++|..++
T Consensus 142 ~~I~~v---~~~PiI--aGGlI~t~edv~~-l~aGA~aIsTs~ 178 (188)
T 1vkf_A 142 KVARKI---PGRTVI--AAGLVETEEEARE-ILKHVSAISTSS 178 (188)
T ss_dssp HHHTTS---TTSEEE--EESCCCSHHHHHH-HTTTSSEEEECC
T ss_pred HHHHHh---cCCCEE--EECCcCCHHHHHH-HHCCCeEEEeCC
Confidence 444444 578998 8999999999999 999999999775
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.002 Score=56.91 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=67.2
Q ss_pred HHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhc-------cceEeecccChhHHH-------------Hhh---hc----
Q 021609 153 LRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVM-------GDIRVLRNMDDDEVF-------------TFA---KK---- 205 (310)
Q Consensus 153 ~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~-------~~~~~l~~~~~d~~~-------------~~~---~~---- 205 (310)
..+.+.|+|++.+|+..+...+..+.+..++.. ..+.+++.++..++. .++ ++
T Consensus 80 ~~~~~~gad~vTvh~~~G~~~~~~a~~~~~~~~~~~~~~l~~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~A~~a~~~g~~ 159 (239)
T 3tr2_A 80 RAVAELGVWMMNIHISGGRTMMETVVNALQSITLKEKPLLIGVTILTSLDGSDLKTLGIQEKVPDIVCRMATLAKSAGLD 159 (239)
T ss_dssp HHHHHTTCSEEEEEGGGCHHHHHHHHHHHHTCCCSSCCEEEEECSCTTCCHHHHHHTTCCSCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHhCCCCEEEEeccCCHHHHHHHHHHHHhcCcCCCceEEEEEEEeeCCHHHHHhcCCCCCHHHHHHHHHHHHHHcCCC
Confidence 345678999999997654333333444443220 113345555533221 111 11
Q ss_pred --cCCcHHHHHHHhhcCC-CCEEEeCCCCCCCHHH-----------HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 206 --IAAPYDLVMQTKQLGR-LPVVHFAAGGVATPAD-----------AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 206 --~~~~~~~i~~i~~~~~-iPVi~iA~GGI~t~~d-----------~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
..++.+ ...+++... -.++ ...||+ +.. ..+++++|+|.+++||+|++++||...++++.+.
T Consensus 160 GvV~s~~e-~~~ir~~~~~~fl~--vtPGIr-~~g~~~~dQ~rv~t~~~~~~aGad~lVvGr~I~~a~dp~~a~~~i~~~ 235 (239)
T 3tr2_A 160 GVVCSAQE-AALLRKQFDRNFLL--VTPGIR-LETDEKGDQKRVMTPRAAIQAGSDYLVIGRPITQSTDPLKALEAIDKD 235 (239)
T ss_dssp EEECCHHH-HHHHHTTCCTTSEE--EECCBC-----------CCBCHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred EEEECchh-HHHHHHhcCCCcEE--ECCCcC-CCCCCcCcccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHH
Confidence 123333 344555432 2333 257885 332 5577899999999999999999999999888876
Q ss_pred Hh
Q 021609 272 VT 273 (310)
Q Consensus 272 i~ 273 (310)
++
T Consensus 236 i~ 237 (239)
T 3tr2_A 236 IK 237 (239)
T ss_dssp C-
T ss_pred Hh
Confidence 64
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0043 Score=56.17 Aligned_cols=179 Identities=17% Similarity=0.196 Sum_probs=104.5
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc-C-Cc-cccccc--CCCCCCCCHHHHHHHHhhcCcceeeccccCc------HHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE-R-VP-ADIRSQ--GGVARMSDPQLIKEIKQSVTIPVMAKARIGH------FVEA 107 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~-~-~~-~~~~~~--~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~------~~~a 107 (310)
+...-|+-.|+.++++|++++ -+. . .. ...... +...+......++.|.+.+++||++..-.++ ...+
T Consensus 25 ~~~a~D~~sA~i~e~aGf~ai-~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~~~~~v 103 (287)
T 3b8i_A 25 TASVFDPMSARIAADLGFECG-ILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTV 103 (287)
T ss_dssp CEECCSHHHHHHHHHTTCSCE-EECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSSSHHHHHHHH
T ss_pred EecCCCHHHHHHHHHcCCCEE-EeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHH
Confidence 444557788999999999987 221 0 00 000000 0011111234666777888999988644332 3456
Q ss_pred HHHHHcCCCEEEeCCC-------------CCchhHHHHHHh---cC--CCCcEEEe--c--C----CHHHHHHHHHhCCC
Q 021609 108 QILEAIGIDYVDESEV-------------LTPADEENHINK---HN--FRIPFVCG--C--R----NLGEALRRIREGAA 161 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~-------------~~~~~~~~~i~~---~~--~~i~~~v~--~--~----t~~ea~~~~~~Gad 161 (310)
+.+.++||.+|.+-+. .+..+..+.++. .+ .+..+..- . . ..++++...++|+|
T Consensus 104 ~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGAd 183 (287)
T 3b8i_A 104 VELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGAD 183 (287)
T ss_dssp HHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHHcCCC
Confidence 7788899999952222 122233333332 22 23333332 1 1 12334445677999
Q ss_pred EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHH
Q 021609 162 MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM 241 (310)
Q Consensus 162 ~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~ 241 (310)
.|.+.+. ++.+.++++.+..++|++ +..+|-...-+..++
T Consensus 184 ~i~~e~~---------------------------------------~~~~~~~~i~~~~~~P~i-i~~~g~~~~~~~~eL 223 (287)
T 3b8i_A 184 GICLVGV---------------------------------------RDFAHLEAIAEHLHIPLM-LVTYGNPQLRDDARL 223 (287)
T ss_dssp EEEEECC---------------------------------------CSHHHHHHHHTTCCSCEE-EECTTCGGGCCHHHH
T ss_pred EEEecCC---------------------------------------CCHHHHHHHHHhCCCCEE-EeCCCCCCCCCHHHH
Confidence 8887641 124567778877889998 456664333456777
Q ss_pred HHcCCCEEEEccccccC
Q 021609 242 MQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 242 l~~GadgV~VGsai~~a 258 (310)
-++|+.-|..|..++++
T Consensus 224 ~~lGv~~v~~~~~~~ra 240 (287)
T 3b8i_A 224 ARLGVRVVVNGHAAYFA 240 (287)
T ss_dssp HHTTEEEEECCCHHHHH
T ss_pred HHcCCcEEEEChHHHHH
Confidence 88999999999998873
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0018 Score=60.62 Aligned_cols=125 Identities=21% Similarity=0.219 Sum_probs=82.2
Q ss_pred hcCcceeec--cccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEec--CCHHHHHHHHHhCCCEEEE
Q 021609 90 SVTIPVMAK--ARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGC--RNLGEALRRIREGAAMIRT 165 (310)
Q Consensus 90 ~~~iPv~vk--~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~--~t~~ea~~~~~~Gad~V~v 165 (310)
.+++|++.- +..+....+..+.++|.=+++.. ..+++++.+.+++...-+...+.. .+.+.+.++.++|+|+|.+
T Consensus 40 ~l~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~~-~~s~ee~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~i 118 (361)
T 3r2g_A 40 TLNLPVISANMDTITESNMANFMHSKGAMGALHR-FMTIEENIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFCV 118 (361)
T ss_dssp EESSCEEECCSTTTCSHHHHHHHHHTTCEEBCCS-CSCHHHHHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEEE
T ss_pred EcCCCEEECCCCCchHHHHHHHHHHcCCCEEEeC-CCCHHHHHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEEE
Confidence 368898763 33345677888888997666533 367778877776532212222222 2346677788899999988
Q ss_pred cCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHc
Q 021609 166 KGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQL 244 (310)
Q Consensus 166 ~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~ 244 (310)
+...+.. ...++.++.+++. .++||+ .|+|.|++++..+.++
T Consensus 119 d~a~G~~----------------------------------~~~~e~I~~ir~~~~~~~Vi---~G~V~T~e~A~~a~~a 161 (361)
T 3r2g_A 119 DVAHAHA----------------------------------KYVGKTLKSLRQLLGSRCIM---AGNVATYAGADYLASC 161 (361)
T ss_dssp ECSCCSS----------------------------------HHHHHHHHHHHHHHTTCEEE---EEEECSHHHHHHHHHT
T ss_pred eCCCCCc----------------------------------HhHHHHHHHHHHhcCCCeEE---EcCcCCHHHHHHHHHc
Confidence 6432110 0014456667664 368887 2679999999999999
Q ss_pred CCCEEEEc
Q 021609 245 GCDGVFVG 252 (310)
Q Consensus 245 GadgV~VG 252 (310)
|+|+|.||
T Consensus 162 GaD~I~Vg 169 (361)
T 3r2g_A 162 GADIIKAG 169 (361)
T ss_dssp TCSEEEEC
T ss_pred CCCEEEEc
Confidence 99999995
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0066 Score=51.65 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCEEEeC-CCCCchhHHHHHHhc-CCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHH
Q 021609 105 VEAQILEAIGIDYVDES-EVLTPADEENHINKH-NFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~-~~~~~~~~~~~i~~~-~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~ 181 (310)
+.++.+.+.|++.+..+ ......+..+.+++. +.+..+.+ .+++.+++..+.+.|+|++ +++. +.
T Consensus 26 ~~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~-~~---------- 93 (205)
T 1wa3_A 26 EKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VSPH-LD---------- 93 (205)
T ss_dssp HHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSS-CC----------
T ss_pred HHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-EcCC-CC----------
Confidence 45677888999999432 222233444555543 33566777 4689999999999999999 6532 11
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
.+.++..++ .++|++ + |+.|+.++.+++++|+|.+-+
T Consensus 94 ----------------------------~~~~~~~~~-~g~~vi--~--g~~t~~e~~~a~~~Gad~vk~ 130 (205)
T 1wa3_A 94 ----------------------------EEISQFCKE-KGVFYM--P--GVMTPTELVKAMKLGHTILKL 130 (205)
T ss_dssp ----------------------------HHHHHHHHH-HTCEEE--C--EECSHHHHHHHHHTTCCEEEE
T ss_pred ----------------------------HHHHHHHHH-cCCcEE--C--CcCCHHHHHHHHHcCCCEEEE
Confidence 112333333 468887 3 778999999999999999875
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0082 Score=58.54 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeC
Q 021609 43 VTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDES 121 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~ 121 (310)
.+.+.++++.++|++.+ .+|.. .|.. ....+.++++++.+ ++|++++.. ...+.++.+.++|||+|...
T Consensus 231 d~~~~a~~l~~aG~d~I-~id~a-------~g~~-~~~~~~i~~ir~~~p~~~Vi~g~v-~t~e~a~~l~~aGaD~I~Vg 300 (496)
T 4fxs_A 231 GNEERVKALVEAGVDVL-LIDSS-------HGHS-EGVLQRIRETRAAYPHLEIIGGNV-ATAEGARALIEAGVSAVKVG 300 (496)
T ss_dssp CCHHHHHHHHHTTCSEE-EEECS-------CTTS-HHHHHHHHHHHHHCTTCCEEEEEE-CSHHHHHHHHHHTCSEEEEC
T ss_pred chHHHHHHHHhccCceE-Eeccc-------cccc-hHHHHHHHHHHHHCCCceEEEccc-CcHHHHHHHHHhCCCEEEEC
Confidence 34688999999999976 55411 0100 11257888999887 899988543 34578999999999999621
Q ss_pred --C-C-----------CCchhHHHHHHh--cCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEcC
Q 021609 122 --E-V-----------LTPADEENHINK--HNFRIPFVC--GCRNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 122 --~-~-----------~~~~~~~~~i~~--~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~g 167 (310)
. . .+.......+.+ ...++++++ ++.+.+++.++..+||+.|.+..
T Consensus 301 ~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs 364 (496)
T 4fxs_A 301 IGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGS 364 (496)
T ss_dssp SSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred CCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecH
Confidence 1 1 111222222222 234688888 59999999999999999998753
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.021 Score=55.79 Aligned_cols=40 Identities=30% Similarity=0.419 Sum_probs=32.3
Q ss_pred HHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 210 YDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 210 ~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
++.++++++.. ++|++ .|+|.+.+++..+.++|+|+|.+|
T Consensus 285 ~~~i~~i~~~~~~~~vi---~g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 285 IDKVKEVRAKYPSLNII---AGNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp HHHHHHHHHHCTTSEEE---EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred hhHHHHHHHhCCCceEE---eeeeccHHHHHHHHHhCCCEEEEC
Confidence 45677776653 57886 388999999999999999999985
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0051 Score=53.81 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=26.2
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHc---CCC----EEEEcc
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQL---GCD----GVFVGS 253 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~---Gad----gV~VGs 253 (310)
++||- ++|||+|.+|+.+++++ |++ -+-..+
T Consensus 184 ~v~vK--aaGGirt~~~al~~i~a~~~Ga~~~~fRiGtS~ 221 (226)
T 1vcv_A 184 RLGVK--MAGGIRTREQAKAIVDAIGWGEDPARVRLGTST 221 (226)
T ss_dssp CCEEE--EESSCCSHHHHHHHHHHHCSCSCTTTEEEEESC
T ss_pred CceEE--EeCCCCCHHHHHHHHHHHHCCCCcCCceEecCc
Confidence 58998 78999999999999999 999 655443
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0025 Score=56.98 Aligned_cols=26 Identities=27% Similarity=0.379 Sum_probs=22.9
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCC
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~Gad 247 (310)
.++||- ++|||+|.+|+.+++++|++
T Consensus 197 ~~v~VK--aaGGIrt~~~al~~i~aga~ 222 (260)
T 1p1x_A 197 KTVGFK--PAGGVRTAEDAQKYLAIADE 222 (260)
T ss_dssp TTCEEE--CBSSCCSHHHHHHHHHHHHH
T ss_pred CCceEE--EeCCCCCHHHHHHHHHhhhh
Confidence 468888 89999999999999998765
|
| >3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.013 Score=52.18 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=40.2
Q ss_pred HHHHhhc-CCCCEEEeCCCCCCC-HHHHHHHHHcCCC----E--EEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 213 VMQTKQL-GRLPVVHFAAGGVAT-PADAAMMMQLGCD----G--VFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 213 i~~i~~~-~~iPVi~iA~GGI~t-~~d~~~~l~~Gad----g--V~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
++.+++. .+.+++.. ||+- ..+..++++.|+| + ++|||.|++++||...++++.+.++..
T Consensus 184 ~~~ir~~~~~~~~l~P---GIg~qg~tp~~a~~~G~d~~~~~~livvGR~I~~A~dp~~aa~~i~~~i~~~ 251 (255)
T 3qw3_A 184 LARVRARAPTLWFLVP---GIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAI 251 (255)
T ss_dssp HHHHHHHCSSCCEEEC---CC-----CHHHHHHHHCCTTSCCEEEEESHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCeEEEC---CcCCCCCCHHHHHHcCCCcccCeeEEEeChhhcCCCCHHHHHHHHHHHHHHH
Confidence 4445443 34455532 3321 1245555778888 5 999999999999999999998888754
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.014 Score=56.73 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=77.4
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeC--
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDES-- 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~-- 121 (310)
.+.++++.++|++.+ .++.. .|.. ....+.++++++.+ ++|++++.. ...+.++.+.++|||+|...
T Consensus 231 ~~~a~~l~~aG~d~I-~id~a-------~g~~-~~~~~~v~~i~~~~p~~~Vi~g~v-~t~e~a~~l~~aGaD~I~vg~g 300 (490)
T 4avf_A 231 GERVAALVAAGVDVV-VVDTA-------HGHS-KGVIERVRWVKQTFPDVQVIGGNI-ATAEAAKALAEAGADAVKVGIG 300 (490)
T ss_dssp HHHHHHHHHTTCSEE-EEECS-------CCSB-HHHHHHHHHHHHHCTTSEEEEEEE-CSHHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHHHhhcccceE-Eeccc-------CCcc-hhHHHHHHHHHHHCCCceEEEeee-CcHHHHHHHHHcCCCEEEECCC
Confidence 478999999999976 55300 1110 11257888899887 889988643 34578999999999999631
Q ss_pred ---C-------C--CCchhHHHHHHh--cCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEcCC
Q 021609 122 ---E-------V--LTPADEENHINK--HNFRIPFVC--GCRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 122 ---~-------~--~~~~~~~~~i~~--~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
. . .+..+....+.+ ...++++++ ++.+.+++.++..+||+.|.+...
T Consensus 301 ~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~ 363 (490)
T 4avf_A 301 PGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSM 363 (490)
T ss_dssp CSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTT
T ss_pred CCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHH
Confidence 1 1 112222222222 245788888 599999999999999999987643
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.015 Score=53.70 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=74.2
Q ss_pred HHHHHHHHcC--CcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC-
Q 021609 46 EQARVAEEAG--ACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE- 122 (310)
Q Consensus 46 ~~A~~~~~~G--a~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~- 122 (310)
+.++.+.++| ++++ .+|.. .|. .....+.++.+++.+..|++++..+...++++.+.++|||+|+.+.
T Consensus 109 ~~a~~~~~~g~~~~~i-~i~~~-------~G~-~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~h 179 (336)
T 1ypf_A 109 EFVQQLAAEHLTPEYI-TIDIA-------HGH-SNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIG 179 (336)
T ss_dssp HHHHHHHHTTCCCSEE-EEECS-------SCC-SHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSS
T ss_pred HHHHHHHhcCCCCCEE-EEECC-------CCC-cHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecC
Confidence 5677888999 8886 55411 011 1122578888998886555555434456899999999999996421
Q ss_pred C-C------------C--chhHHHHHHhcCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEc
Q 021609 123 V-L------------T--PADEENHINKHNFRIPFVC--GCRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 123 ~-~------------~--~~~~~~~i~~~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~ 166 (310)
. . + ..+....+.+ ..++++++ ++.+..++.++..+||+.|.+.
T Consensus 180 gG~~~~~~~~~~~g~~g~~~~~l~~v~~-~~~ipVIa~GGI~~g~Dv~kalalGAdaV~iG 239 (336)
T 1ypf_A 180 PGKVCITKIKTGFGTGGWQLAALRWCAK-AASKPIIADGGIRTNGDVAKSIRFGATMVMIG 239 (336)
T ss_dssp CSTTCHHHHHHSCSSTTCHHHHHHHHHH-TCSSCEEEESCCCSTHHHHHHHHTTCSEEEES
T ss_pred CCceeecccccCcCCchhHHHHHHHHHH-HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 1 0 0 1222333322 23788888 6999999999999999999875
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0027 Score=56.15 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=46.7
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~ 264 (310)
...++++++.+...+|+- ..|||++.+++.+++.+|||-|++||+.++ ||...
T Consensus 62 ~~~~~i~~i~~~~~~pl~--vGGGIrs~e~~~~~l~~GadkVii~t~a~~--~p~li 114 (243)
T 4gj1_A 62 RQFALIEKLAKEVSVNLQ--VGGGIRSKEEVKALLDCGVKRVVIGSMAIK--DATLC 114 (243)
T ss_dssp CCHHHHHHHHHHCCSEEE--EESSCCCHHHHHHHHHTTCSEEEECTTTTT--CHHHH
T ss_pred hHHHHHHHHHHhcCCCeE--eccccccHHHHHHHHHcCCCEEEEcccccc--CCchH
Confidence 447888888888899998 579999999999999999999999999997 88643
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.014 Score=55.27 Aligned_cols=114 Identities=21% Similarity=0.271 Sum_probs=76.6
Q ss_pred CHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeC--
Q 021609 44 TPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDES-- 121 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~-- 121 (310)
+.+.++.+.++|++.| .++ -. .|.. ....+.++++++.+++|++++.. ...+.++.+.++|||+|...
T Consensus 145 ~~e~~~~lveaGvdvI-vld------ta-~G~~-~~~~e~I~~ik~~~~i~Vi~g~V-~t~e~A~~a~~aGAD~I~vG~g 214 (400)
T 3ffs_A 145 EIERAKLLVEAGVDVI-VLD------SA-HGHS-LNIIRTLKEIKSKMNIDVIVGNV-VTEEATKELIENGADGIKVGIG 214 (400)
T ss_dssp -CHHHHHHHHHTCSEE-EEC------CS-CCSB-HHHHHHHHHHHTTCCCEEEEEEE-CSHHHHHHHHHTTCSEEEECC-
T ss_pred HHHHHHHHHHcCCCEE-EEe------CC-CCCc-ccHHHHHHHHHhcCCCeEEEeec-CCHHHHHHHHHcCCCEEEEeCC
Confidence 3688999999999976 442 01 1110 01157788888888999997543 34588999999999999631
Q ss_pred -------C-----CCCchhHHHHHHh--cCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEcC
Q 021609 122 -------E-----VLTPADEENHINK--HNFRIPFVC--GCRNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 122 -------~-----~~~~~~~~~~i~~--~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~g 167 (310)
. ..+...+...+.+ ...++++++ ++.+.+++.++..+|++.|.+..
T Consensus 215 ~Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vGt 276 (400)
T 3ffs_A 215 PGSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIGS 276 (400)
T ss_dssp --------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEECG
T ss_pred CCcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEECh
Confidence 0 0112223333322 235788888 58999999999999999998753
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.032 Score=48.24 Aligned_cols=124 Identities=17% Similarity=0.201 Sum_probs=78.8
Q ss_pred HHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhC
Q 021609 83 LIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREG 159 (310)
Q Consensus 83 ~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~G 159 (310)
.++.+++.-=+||+...... ..+.++.+.+.|++.+- .-......+..+.+++...++.+..+ +.+.+++..+.++|
T Consensus 9 ~~~~l~~~~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aG 88 (214)
T 1wbh_A 9 AESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAG 88 (214)
T ss_dssp HHHHHHSCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHT
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcC
Confidence 44555543335555443322 24567889999999994 33333444555545443345665554 56778999999999
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
+|++.+.+ + +.+..+..++ ..+|++ + |+.|++++.
T Consensus 89 Ad~v~~p~---~-------------------------------------d~~v~~~~~~-~g~~~i-~---G~~t~~e~~ 123 (214)
T 1wbh_A 89 AQFAISPG---L-------------------------------------TEPLLKAATE-GTIPLI-P---GISTVSELM 123 (214)
T ss_dssp CSCEEESS---C-------------------------------------CHHHHHHHHH-SSSCEE-E---EESSHHHHH
T ss_pred CCEEEcCC---C-------------------------------------CHHHHHHHHH-hCCCEE-E---ecCCHHHHH
Confidence 99985321 0 1122222223 457876 2 599999999
Q ss_pred HHHHcCCCEEEE
Q 021609 240 MMMQLGCDGVFV 251 (310)
Q Consensus 240 ~~l~~GadgV~V 251 (310)
++++.|+|.+.+
T Consensus 124 ~A~~~Gad~v~~ 135 (214)
T 1wbh_A 124 LGMDYGLKEFKF 135 (214)
T ss_dssp HHHHTTCCEEEE
T ss_pred HHHHCCCCEEEE
Confidence 999999999988
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0052 Score=55.39 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCC
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~Gad 247 (310)
.+++|- ++|||+|.+|+.+++++|++
T Consensus 224 ~~vgVK--aaGGIrt~e~al~~i~aga~ 249 (281)
T 2a4a_A 224 NKIGLK--VSGGISDLNTASHYILLARR 249 (281)
T ss_dssp TCCEEE--EESSCCSHHHHHHHHHHHHH
T ss_pred CCceEE--EeCCCCCHHHHHHHHHHhhh
Confidence 468888 78999999999999998775
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.032 Score=48.58 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=78.1
Q ss_pred HHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhC
Q 021609 83 LIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREG 159 (310)
Q Consensus 83 ~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~G 159 (310)
.+..+++.-=+||+...... ..+.++.+.+.|++.+- .-......+..+.+++..+++.+.++ +.+.+++..+.++|
T Consensus 19 ~~~~l~~~~ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aG 98 (225)
T 1mxs_A 19 IDAICEKARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAG 98 (225)
T ss_dssp HHHHHHHHSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHHHHCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCC
Confidence 34444444345665443322 24667899999999984 32222334455544444456666554 45778999999999
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
+|++.+ + .. +.+.++ .++...+|++ + |+.|++++.
T Consensus 99 Ad~v~~-p-~~--------------------------------------d~~v~~-~~~~~g~~~i-~---G~~t~~e~~ 133 (225)
T 1mxs_A 99 AQFVVT-P-GI--------------------------------------TEDILE-AGVDSEIPLL-P---GISTPSEIM 133 (225)
T ss_dssp CSSEEC-S-SC--------------------------------------CHHHHH-HHHHCSSCEE-C---EECSHHHHH
T ss_pred CCEEEe-C-CC--------------------------------------CHHHHH-HHHHhCCCEE-E---eeCCHHHHH
Confidence 999953 2 10 111222 2222457876 2 599999999
Q ss_pred HHHHcCCCEEEE
Q 021609 240 MMMQLGCDGVFV 251 (310)
Q Consensus 240 ~~l~~GadgV~V 251 (310)
++++.|+|.|.+
T Consensus 134 ~A~~~Gad~vk~ 145 (225)
T 1mxs_A 134 MGYALGYRRFKL 145 (225)
T ss_dssp HHHTTTCCEEEE
T ss_pred HHHHCCCCEEEE
Confidence 999999999988
|
| >1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.014 Score=53.13 Aligned_cols=177 Identities=16% Similarity=0.113 Sum_probs=96.4
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc--CCccccccc--CCCCCCCCHHHHHHHHhhcCcceeeccccCc------HHHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE--RVPADIRSQ--GGVARMSDPQLIKEIKQSVTIPVMAKARIGH------FVEAQ 108 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~--~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~------~~~a~ 108 (310)
+...-|+-.|+.++++|++++ -+. ......... +...+......++.|.+.+++||++..-.++ ...++
T Consensus 23 ~~~a~D~~sA~~~~~aG~~ai-~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~v~~~v~ 101 (295)
T 1s2w_A 23 IMEAHNGLSARIVQEAGFKGI-WGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVR 101 (295)
T ss_dssp EEEECSHHHHHHHHHHTCSCE-EECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHcCCCEE-EeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCCHHHHHHHHH
Confidence 444557788999999999987 221 000000000 0011111234666777888999988654332 34567
Q ss_pred HHHHcCCCEEEeCCC----------------CCchhHHHHHHh---c--CCCCcEEEecCC------HHH----HHHHHH
Q 021609 109 ILEAIGIDYVDESEV----------------LTPADEENHINK---H--NFRIPFVCGCRN------LGE----ALRRIR 157 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~----------------~~~~~~~~~i~~---~--~~~i~~~v~~~t------~~e----a~~~~~ 157 (310)
.+.++||.+|.+-+. .+..+..+.++. . ..+..+..-... .++ ++...+
T Consensus 102 ~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~e 181 (295)
T 1s2w_A 102 KLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRN 181 (295)
T ss_dssp HHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHH
Confidence 788999999942111 122233333322 1 233333332211 133 444567
Q ss_pred hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC--CCEEEeC-CCCCCC
Q 021609 158 EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR--LPVVHFA-AGGVAT 234 (310)
Q Consensus 158 ~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~--iPVi~iA-~GGI~t 234 (310)
+|+|.|.+.+.. ++.+.++++.+..+ +|+++.. .+|-.+
T Consensus 182 AGAd~i~~e~~~--------------------------------------~~~~~~~~i~~~~~~~~P~i~~~~~~~~~~ 223 (295)
T 1s2w_A 182 AGADAILMHSKK--------------------------------------ADPSDIEAFMKAWNNQGPVVIVPTKYYKTP 223 (295)
T ss_dssp TTCSEEEECCCS--------------------------------------SSSHHHHHHHHHHTTCSCEEECCSTTTTSC
T ss_pred cCCCEEEEcCCC--------------------------------------CCHHHHHHHHHHcCCCCCEEEeCCCCCCCC
Confidence 799888875311 11233444544444 8998521 234333
Q ss_pred HHHHHHHHHcCCCEEEEcccccc
Q 021609 235 PADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 235 ~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+.++-++|+.-|..+...++
T Consensus 224 ---~~eL~~lGv~~v~~~~~~~r 243 (295)
T 1s2w_A 224 ---TDHFRDMGVSMVIWANHNLR 243 (295)
T ss_dssp ---HHHHHHHTCCEEEECSHHHH
T ss_pred ---HHHHHHcCCcEEEEChHHHH
Confidence 66767899999999999886
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.014 Score=51.72 Aligned_cols=71 Identities=28% Similarity=0.375 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCC-CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVA-RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+.++..++++++.|++.+..+. ...|+. -..+++.++.+++..++||++..+++.-+++..+.+.|+|+|+
T Consensus 143 ~dd~~~akrl~~~G~~aVmPlg-------~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVl 214 (265)
T 1wv2_A 143 SDDPIIARQLAEIGCIAVMPLA-------GLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVL 214 (265)
T ss_dssp CSCHHHHHHHHHSCCSEEEECS-------SSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred CCCHHHHHHHHHhCCCEEEeCC-------ccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 4578999999999999874441 112232 2456899999999899999998888888899999999999996
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.027 Score=55.01 Aligned_cols=113 Identities=16% Similarity=0.266 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeC--
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDES-- 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~-- 121 (310)
.+.++.+.++|++.+ .++. ..|.. ....+.++.+++.+ ++|++++.. ...+.++.+.++|||+|...
T Consensus 257 ~~~a~~~~~aG~d~v-~i~~-------~~G~~-~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~vg~~ 326 (514)
T 1jcn_A 257 KYRLDLLTQAGVDVI-VLDS-------SQGNS-VYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRVGMG 326 (514)
T ss_dssp HHHHHHHHHTTCSEE-EECC-------SCCCS-HHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEECSS
T ss_pred HHHHHHHHHcCCCEE-Eeec-------cCCcc-hhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEECCC
Confidence 467888999999987 5531 11110 01147888999888 899998643 34578999999999999531
Q ss_pred -C-----------CCCchhHHHHHHh--cCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEcC
Q 021609 122 -E-----------VLTPADEENHINK--HNFRIPFVC--GCRNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 122 -~-----------~~~~~~~~~~i~~--~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~g 167 (310)
. ..+.......+.+ ...++++++ ++.+..++.++..+|||.|.+..
T Consensus 327 ~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~iG~ 388 (514)
T 1jcn_A 327 CGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGS 388 (514)
T ss_dssp CSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred CCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeECH
Confidence 1 1111212222222 224678877 58999999999999999998854
|
| >2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.35 Score=42.99 Aligned_cols=177 Identities=13% Similarity=0.072 Sum_probs=102.9
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHH---hhcCcceeeccccCcHHHHHHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIK---QSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~---~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
|.+..+.+++.++.+...|+|++ ++++..+.+ .+.++... +..+.|+++........+++.+.+
T Consensus 21 g~~~~~~~p~~~e~a~~~GaD~v~lDlE~~~~~------------~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~l~ 88 (267)
T 2vws_A 21 GLWLSSTTAYMAEIAATSGYDWLLIDGEHAPNT------------IQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLD 88 (267)
T ss_dssp EEEECSCCHHHHHHHHTTCCSEEEEETTTSCCC------------HHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHhCCCCEEEEcCCCCCCC------------HHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 44667788999999999999988 577533221 12222221 234677777665444566788889
Q ss_pred cCCCEEEeCCCCCchhHHHHHHhc-CC-----------------------------CCcEEEecCCHHHHHHHHH----h
Q 021609 113 IGIDYVDESEVLTPADEENHINKH-NF-----------------------------RIPFVCGCRNLGEALRRIR----E 158 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i~~~-~~-----------------------------~i~~~v~~~t~~ea~~~~~----~ 158 (310)
+|++.|..+...+..++....+.. ++ .+.+++-+.|.+-+..+.+ -
T Consensus 89 ~g~~~I~~P~V~s~ee~~~~~~~~~~~p~G~Rg~~~~~~~~~~~g~~~~y~~~~~~~~~v~~~IEt~~av~~~~eIa~~~ 168 (267)
T 2vws_A 89 IGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVE 168 (267)
T ss_dssp TTCCEEEECCCCSHHHHHHHHHHTSCTTTSCCCSCGGGSGGGGGGTSTTHHHHHHHHCEEEEECCSHHHHHTHHHHHTST
T ss_pred hCCCEEEeCCCCCHHHHHHHHHHHcCCCCCccccccchhhhhhcCcchhhhhhcccccEEEEEECCHHHHHHHHHHhCCC
Confidence 999999877766666665554331 10 1456666777755444332 2
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc--HHHHHHH---hhcCCCCEEEeCCCCCC
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP--YDLVMQT---KQLGRLPVVHFAAGGVA 233 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~--~~~i~~i---~~~~~iPVi~iA~GGI~ 233 (310)
|+|.+.+.. .++. .++ ... . +...+ ...++++ ++...+|+.+. . .
T Consensus 169 gvd~l~iG~----~DL~------~~l----g~~-~-----------~~~~p~v~~a~~~iv~aa~aaG~~~~v~--~--~ 218 (267)
T 2vws_A 169 GIDGVFIGP----ADLS------ASL----GYP-D-----------NAGHPEVQRIIETSIRRIRAAGKAAGFL--A--V 218 (267)
T ss_dssp TCCEEEECH----HHHH------HHT----TCS-S-----------SCCTHHHHHHHHHHHHHHHHTTCEEEEE--C--S
T ss_pred CCCEEEECh----HHHH------HHh----CCC-C-----------CCCCHHHHHHHHHHHHHHHHhCCeEEEe--c--C
Confidence 688887642 1211 110 000 0 00001 1222222 22245676543 2 3
Q ss_pred CHHHHHHHHHcCCCEEEEcccc
Q 021609 234 TPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 234 t~~d~~~~l~~GadgV~VGsai 255 (310)
+++.+..++..|++.+.+|+-.
T Consensus 219 d~~~a~~~~~~G~~~~s~~~d~ 240 (267)
T 2vws_A 219 APDMAQQCLAWGANFVAVGVDT 240 (267)
T ss_dssp SHHHHHHHHHTTCCEEEEEEHH
T ss_pred CHHHHHHHHHCCCCEEEEchHH
Confidence 8999999999999999999743
|
| >3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.032 Score=53.69 Aligned_cols=40 Identities=15% Similarity=0.309 Sum_probs=33.0
Q ss_pred HHHHHHHcCCCE------EEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 237 DAAMMMQLGCDG------VFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 237 d~~~~l~~Gadg------V~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
+..++++.|+|. ++|||.|++++||...++++.+.++...
T Consensus 208 tp~~a~~~g~d~~~~~~livvgR~I~~A~dp~~aa~~i~~~i~~~r 253 (453)
T 3qw4_B 208 SLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAIR 253 (453)
T ss_dssp CHHHHHHHHCCTTSCCEEEEESHHHHSCSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCcccCCceEecChhhccCCCHHHHHHHHHHHHHHHH
Confidence 344447778887 9999999999999999999988887653
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.031 Score=52.85 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=75.1
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeC--
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDES-- 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~-- 121 (310)
.+.+..+.++|++.+ .+|... |.. ....+.++.+++.+ ++|++++.. ...+.++.+.++|+|+|...
T Consensus 155 ~~~a~~~~~~G~d~i-~i~~~~-------g~~-~~~~e~i~~ir~~~~~~pviv~~v-~~~~~a~~a~~~Gad~I~vg~~ 224 (404)
T 1eep_A 155 IERVEELVKAHVDIL-VIDSAH-------GHS-TRIIELIKKIKTKYPNLDLIAGNI-VTKEAALDLISVGADCLKVGIG 224 (404)
T ss_dssp HHHHHHHHHTTCSEE-EECCSC-------CSS-HHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHTTTCSEEEECSS
T ss_pred HHHHHHHHHCCCCEE-EEeCCC-------CCh-HHHHHHHHHHHHHCCCCeEEEcCC-CcHHHHHHHHhcCCCEEEECCC
Confidence 467888889999986 554111 110 01246778888888 899997433 34578999999999999641
Q ss_pred ----------C--CCCchhHHHHHHh--cCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEc
Q 021609 122 ----------E--VLTPADEENHINK--HNFRIPFVC--GCRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 122 ----------~--~~~~~~~~~~i~~--~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~ 166 (310)
. .....+....+.+ ...++++++ ++.+.+++.++..+|+|.|.+.
T Consensus 225 ~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG 285 (404)
T 1eep_A 225 PGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_dssp CSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred CCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhC
Confidence 1 1112222333332 124678877 5899999999999999999874
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.037 Score=51.67 Aligned_cols=124 Identities=17% Similarity=0.225 Sum_probs=76.8
Q ss_pred cCcceeec--cccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-c-CCCCcEE--EecCCHHHHHHHHHhCCCEEE
Q 021609 91 VTIPVMAK--ARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINK-H-NFRIPFV--CGCRNLGEALRRIREGAAMIR 164 (310)
Q Consensus 91 ~~iPv~vk--~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~-~~~i~~~--v~~~t~~ea~~~~~~Gad~V~ 164 (310)
.++|++.. ......+.+..+.++|.=.++. ..+++.+..+.+++ . ...+++. +.+++.+.+..+.++|+|+|.
T Consensus 44 l~~Pii~apM~~vt~~~lA~avA~~GGlgii~-~~~s~e~~~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad~I~ 122 (361)
T 3khj_A 44 LKIPLISSAMDTVTEHLMAVGMARLGGIGIIH-KNMDMESQVNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVDVIV 122 (361)
T ss_dssp ESSSEEECSSTTTCSHHHHHHHHHTTCEEEEC-SSSCHHHHHHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCSEEE
T ss_pred cCCCEEeecCCCCCcHHHHHHHHHcCCCeEEe-cCCCHHHHHHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcCeEE
Confidence 47886653 2333445565444455444432 24556655555544 1 1234433 345556778888899999998
Q ss_pred EcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc
Q 021609 165 TKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL 244 (310)
Q Consensus 165 v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~ 244 (310)
++...+ +. ....+.++++++..++||++ |++.+++++..+.++
T Consensus 123 ld~a~G--~~--------------------------------~~~~~~i~~i~~~~~~~Viv---g~v~t~e~A~~l~~a 165 (361)
T 3khj_A 123 LDSAHG--HS--------------------------------LNIIRTLKEIKSKMNIDVIV---GNVVTEEATKELIEN 165 (361)
T ss_dssp ECCSCC--SB--------------------------------HHHHHHHHHHHHHCCCEEEE---EEECSHHHHHHHHHT
T ss_pred EeCCCC--Cc--------------------------------HHHHHHHHHHHHhcCCcEEE---ccCCCHHHHHHHHHc
Confidence 764321 10 01134566676656788873 678899999999999
Q ss_pred CCCEEEEc
Q 021609 245 GCDGVFVG 252 (310)
Q Consensus 245 GadgV~VG 252 (310)
|+|+|.+|
T Consensus 166 GaD~I~VG 173 (361)
T 3khj_A 166 GADGIKVG 173 (361)
T ss_dssp TCSEEEEC
T ss_pred CcCEEEEe
Confidence 99999996
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.037 Score=51.81 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=76.5
Q ss_pred cCcceeec--cccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-cCC-CCcEEEe----cCCHHHHHHHHHhCCCE
Q 021609 91 VTIPVMAK--ARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINK-HNF-RIPFVCG----CRNLGEALRRIREGAAM 162 (310)
Q Consensus 91 ~~iPv~vk--~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~~~-~i~~~v~----~~t~~ea~~~~~~Gad~ 162 (310)
.++|++.. +.....+.+..+.++|.=.++. ..++++++.+.+++ ... .+.+.+. ..+.+.+..+.++|+|+
T Consensus 45 l~~Pii~apM~~vs~~~lA~avA~aGGlg~i~-~~~s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~ 123 (366)
T 4fo4_A 45 LNIPMVSASMDTVTEARLAIALAQEGGIGFIH-KNMSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDV 123 (366)
T ss_dssp ESSSEEECCCTTTCSHHHHHHHHHTTCEEEEC-SSSCHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSE
T ss_pred cCCCEEeCCCCCCChHHHHHHHHHcCCceEee-cCCCHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCE
Confidence 57886653 3333456665555566544442 23566666655554 221 1333332 24567788888999999
Q ss_pred EEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHH
Q 021609 163 IRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMM 241 (310)
Q Consensus 163 V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~ 241 (310)
|.++...+.. ....+.++++++.. ++||++ |.+.|++++.++
T Consensus 124 I~idta~G~~----------------------------------~~~~~~I~~ik~~~p~v~Vi~---G~v~t~e~A~~a 166 (366)
T 4fo4_A 124 LLIDSSHGHS----------------------------------EGVLQRIRETRAAYPHLEIIG---GNVATAEGARAL 166 (366)
T ss_dssp EEEECSCTTS----------------------------------HHHHHHHHHHHHHCTTCEEEE---EEECSHHHHHHH
T ss_pred EEEeCCCCCC----------------------------------HHHHHHHHHHHHhcCCCceEe---eeeCCHHHHHHH
Confidence 9875322110 01134566666653 678862 668899999999
Q ss_pred HHcCCCEEEEc
Q 021609 242 MQLGCDGVFVG 252 (310)
Q Consensus 242 l~~GadgV~VG 252 (310)
.++|||+|.+|
T Consensus 167 ~~aGAD~I~vG 177 (366)
T 4fo4_A 167 IEAGVSAVKVG 177 (366)
T ss_dssp HHHTCSEEEEC
T ss_pred HHcCCCEEEEe
Confidence 99999999995
|
| >1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.4 Score=42.24 Aligned_cols=179 Identities=17% Similarity=0.108 Sum_probs=102.0
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCC
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGI 115 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGa 115 (310)
+.+..+.+++.++.+...|+|++ ++++..|.+.... ...+..+ +..+.|+++...-.....++.+.++|+
T Consensus 22 ~~~l~v~~p~~~e~a~~~gaD~v~lDlEd~p~~~~~a--------~~~~~~~-~~~~~~~~VRv~~~~~~~i~~~l~~g~ 92 (256)
T 1dxe_A 22 GCWSALSNPISTEVLGLAGFDWLVLDGEHAPNDISTF--------IPQLMAL-KGSASAPVVRVPTNEPVIIKRLLDIGF 92 (256)
T ss_dssp EEEECSCSHHHHHHHTTSCCSEEEEESSSSSCCHHHH--------HHHHHHT-TTCSSEEEEECSSSCHHHHHHHHHTTC
T ss_pred EEEEeCCCHHHHHHHHhCCCCEEEEcCCCCCCCHHHH--------HHHHHHH-HhCCCcEEEECCCCCHHHHHHHHhcCC
Confidence 34566788999999999999987 5775333221110 1122222 234567777654333345788889999
Q ss_pred CEEEeCCCCCchhHHHHHHhcC-----------------------------CCCcEEEecCCHHHHHHHHH----hCCCE
Q 021609 116 DYVDESEVLTPADEENHINKHN-----------------------------FRIPFVCGCRNLGEALRRIR----EGAAM 162 (310)
Q Consensus 116 d~Vi~~~~~~~~~~~~~i~~~~-----------------------------~~i~~~v~~~t~~ea~~~~~----~Gad~ 162 (310)
++|..+...+..++....+... ..+.+++-+.|.+-+..+.+ -|+|.
T Consensus 93 ~gI~~P~V~s~~ev~~~~~~~~~~p~g~Rg~~~~~~~~~~g~~~~~~~~~~~~~~v~~~IEt~~av~~~~eIa~~~~vd~ 172 (256)
T 1dxe_A 93 YNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDG 172 (256)
T ss_dssp CEEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHHHHHTSTTCCE
T ss_pred ceeeecCcCCHHHHHHHHHHhcCCCCCccCCCcchhhhhcCchHHHHHhcCcccEEEEEECCHHHHHhHHHHhCCCCCCE
Confidence 9998777666666655443311 13556777777755444332 27888
Q ss_pred EEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc--HHHHHHH---hhcCCCCEEEeCCCCCCCHHH
Q 021609 163 IRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP--YDLVMQT---KQLGRLPVVHFAAGGVATPAD 237 (310)
Q Consensus 163 V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~--~~~i~~i---~~~~~iPVi~iA~GGI~t~~d 237 (310)
+.+.. .++. .++- . +. +...+ ...++++ ++...+|+.++ . .+++.
T Consensus 173 l~iG~----~DL~------~~lg----~-~~-----------~~~~p~v~~a~~~iv~aa~a~G~~~~v~--~--~d~~~ 222 (256)
T 1dxe_A 173 IFVGP----SDLA------AALG----H-LG-----------NASHPDVQKAIQHIFNRASAHGKPSGIL--A--PVEAD 222 (256)
T ss_dssp EEECH----HHHH------HHTT----C-TT-----------CTTSHHHHHHHHHHHHHHHHTTCCEEEE--C--CSHHH
T ss_pred EEECh----HHHH------HHhC----C-CC-----------CCCCHHHHHHHHHHHHHHHHhCCceEEe--c--CCHHH
Confidence 87642 1211 1100 0 00 00011 1222222 22246777543 2 27999
Q ss_pred HHHHHHcCCCEEEEccc
Q 021609 238 AAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsa 254 (310)
+..++..|++.+.+|+-
T Consensus 223 ~~~~~~~G~~~~s~~~d 239 (256)
T 1dxe_A 223 ARRYLEWGATFVAVGSD 239 (256)
T ss_dssp HHHHHHTTCCEEEEEEH
T ss_pred HHHHHHcCCCEEEechH
Confidence 99999999999999864
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.022 Score=53.04 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=63.4
Q ss_pred CHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC------C--CCchhHHHHHHh-cCCCCcEEEe--cCC
Q 021609 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE------V--LTPADEENHINK-HNFRIPFVCG--CRN 148 (310)
Q Consensus 80 ~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~------~--~~~~~~~~~i~~-~~~~i~~~v~--~~t 148 (310)
+.+.++.+++.+++||++|... ..++++.+.++|+|+|+.+. + ....+....+.+ ....++++++ +++
T Consensus 205 ~w~~i~~lr~~~~~PvivK~v~-~~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~~ 283 (352)
T 3sgz_A 205 CWNDLSLLQSITRLPIILKGIL-TKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRT 283 (352)
T ss_dssp CHHHHHHHHHHCCSCEEEEEEC-SHHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCCS
T ss_pred CHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 3478999999999999999864 45889999999999996321 1 122233333322 2335777775 899
Q ss_pred HHHHHHHHHhCCCEEEEc
Q 021609 149 LGEALRRIREGAAMIRTK 166 (310)
Q Consensus 149 ~~ea~~~~~~Gad~V~v~ 166 (310)
.+++.++..+||+.|.+.
T Consensus 284 g~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 284 GTDVLKALALGARCIFLG 301 (352)
T ss_dssp HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999999874
|
| >2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.46 Score=42.77 Aligned_cols=177 Identities=12% Similarity=0.058 Sum_probs=102.9
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHH---hhcCcceeeccccCcHHHHHHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIK---QSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~---~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
|.+....+++.++.+...|+|++ ++++..+.+ .+.+.... +..+.|+++...-....+++.+.+
T Consensus 42 gl~~~~~~p~~~e~a~~~GaD~v~lDlEh~~~~------------~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ld 109 (287)
T 2v5j_A 42 GLWLGLSSSYSAELLAGAGFDWLLIDGEHAPNN------------VQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLD 109 (287)
T ss_dssp EEEECSCCHHHHHHHHTSCCSEEEEESSSSSCC------------HHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHhCCCCEEEEeCCCccch------------HHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHh
Confidence 34677889999999999999987 577533221 22333322 234677777654333456788889
Q ss_pred cCCCEEEeCCCCCchhHHHHHHhcC--C----------------------------CCcEEEecCCHHHHHHHHH--h--
Q 021609 113 IGIDYVDESEVLTPADEENHINKHN--F----------------------------RIPFVCGCRNLGEALRRIR--E-- 158 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i~~~~--~----------------------------~i~~~v~~~t~~ea~~~~~--~-- 158 (310)
+|++.|..+...+..++....+... + .+.+++-+.|.+-+..+.+ .
T Consensus 110 ~ga~~ImlP~V~saeea~~~~~~~~~~p~G~Rg~g~~~~ra~~~g~~~~y~~~~~~~~~vi~mIEt~~av~n~deIaa~~ 189 (287)
T 2v5j_A 110 VGTQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILDVE 189 (287)
T ss_dssp TTCCEEEESCCCSHHHHHHHHHHTSCTTTSCCCGGGTTTGGGTTTTSTTHHHHHHHHCEEEEEECSHHHHHTHHHHHTST
T ss_pred CCCCEEEeCCCCCHHHHHHHHHHhccCccCccccccchhhhhhccchhhhHhhcCCCcEEEEEECcHHHHHHHHHHhCcC
Confidence 9999998777766666665554310 0 1456666777755444332 2
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc--HHHHHHH---hhcCCCCEEEeCCCCCC
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP--YDLVMQT---KQLGRLPVVHFAAGGVA 233 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~--~~~i~~i---~~~~~iPVi~iA~GGI~ 233 (310)
|+|.+.+.. .++. .++- . +. +...+ ...++++ ++...+|+.++ . .
T Consensus 190 ~vD~l~iG~----~DLs------~~lg----~-~~-----------~~~~p~v~~a~~~iv~aaraaG~~~gv~--~--~ 239 (287)
T 2v5j_A 190 GVDGVFIGP----ADLS------ADMG----Y-AG-----------NPQHPEVQAAIEQAIVQIRESGKAPGIL--I--A 239 (287)
T ss_dssp TEEEEEECH----HHHH------HHTT----S-TT-----------CCCSHHHHHHHHHHHHHHHHTTSEEEEE--C--C
T ss_pred CCCEEEECH----HHHH------HHhC----C-CC-----------CCCCHHHHHHHHHHHHHHHHcCCeeEEe--c--C
Confidence 677776532 1211 1100 0 00 00111 1222222 22245676543 2 3
Q ss_pred CHHHHHHHHHcCCCEEEEcccc
Q 021609 234 TPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 234 t~~d~~~~l~~GadgV~VGsai 255 (310)
+++.+..++..|++.+.+|+-.
T Consensus 240 d~~~a~~~~~~G~~~~s~~~d~ 261 (287)
T 2v5j_A 240 NEQLAKRYLELGALFVAVGVDT 261 (287)
T ss_dssp CHHHHHHHHHTTCSEEEEEEHH
T ss_pred CHHHHHHHHHhCCCEEEECcHH
Confidence 7999999999999999999743
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.045 Score=53.06 Aligned_cols=112 Identities=17% Similarity=0.246 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCC-
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESE- 122 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~- 122 (310)
.+.+..+.++|++.+ .++. ..|. .....+.++.+++.+ ++|++++.. ...++++.+.++|+|+|..+.
T Consensus 239 ~~~a~~l~~aGvd~v-~i~~-------~~G~-~~~~~e~i~~i~~~~p~~pvi~g~~-~t~e~a~~l~~~G~d~I~v~~~ 308 (494)
T 1vrd_A 239 MERVEKLVKAGVDVI-VIDT-------AHGH-SRRVIETLEMIKADYPDLPVVAGNV-ATPEGTEALIKAGADAVKVGVG 308 (494)
T ss_dssp HHHHHHHHHTTCSEE-EECC-------SCCS-SHHHHHHHHHHHHHCTTSCEEEEEE-CSHHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHHHHHhCCCEE-EEEe-------cCCc-hHHHHHHHHHHHHHCCCceEEeCCc-CCHHHHHHHHHcCCCEEEEcCC
Confidence 477888999999987 4320 1111 011257888889888 799988643 345788999999999996321
Q ss_pred -------------CCCchhHHHHHHh--cCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEc
Q 021609 123 -------------VLTPADEENHINK--HNFRIPFVC--GCRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 123 -------------~~~~~~~~~~i~~--~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~ 166 (310)
..+..+....+.+ ...++++++ ++.+..++.++..+|||.|.+.
T Consensus 309 ~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iG 369 (494)
T 1vrd_A 309 PGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVG 369 (494)
T ss_dssp CSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 1122222222222 234688888 5899999999999999999874
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.026 Score=53.10 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC-
Q 021609 45 PEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE- 122 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~- 122 (310)
.+.++.+.++|++.+ ++.++.. ....+. .. ..+.+.++++.+++||+++.. ...++++.+.++|+|+|....
T Consensus 168 ~e~a~~~~~agad~i~i~~~~~~---~~~~~~-~~-~~~~i~~l~~~~~~pvi~ggi-~t~e~a~~~~~~Gad~i~vg~G 241 (393)
T 2qr6_A 168 REIAPIVIKAGADLLVIQGTLIS---AEHVNT-GG-EALNLKEFIGSLDVPVIAGGV-NDYTTALHMMRTGAVGIIVGGG 241 (393)
T ss_dssp HHHHHHHHHTTCSEEEEECSSCC---SSCCCC-------CHHHHHHHCSSCEEEECC-CSHHHHHHHHTTTCSEEEESCC
T ss_pred HHHHHHHHHCCCCEEEEeCCccc---cccCCC-cc-cHHHHHHHHHhcCCCEEECCc-CCHHHHHHHHHcCCCEEEECCC
Confidence 366788888999987 2332210 011111 00 234578888889999999654 345789999999999996332
Q ss_pred ----------CCCchhHHHHHHh--------cCC-CCcEEEe--cCCHHHHHHHHHhCCCEEEEc
Q 021609 123 ----------VLTPADEENHINK--------HNF-RIPFVCG--CRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 123 ----------~~~~~~~~~~i~~--------~~~-~i~~~v~--~~t~~ea~~~~~~Gad~V~v~ 166 (310)
..+..+....+.+ .+. .++++++ +.+..++.++..+|++.|.+.
T Consensus 242 g~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V~iG 306 (393)
T 2qr6_A 242 ENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLG 306 (393)
T ss_dssp SCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred cccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 1222222221111 121 2777775 899999999999999999875
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0073 Score=54.85 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=44.3
Q ss_pred HHHhhcCCCCEEEeCCCCCC-CHHH----HHHHHH-cCCCEEEEcccccc--CCCHHHHHHHHHHHHh
Q 021609 214 MQTKQLGRLPVVHFAAGGVA-TPAD----AAMMMQ-LGCDGVFVGSGVFK--SGDPVKRAQAIVRAVT 273 (310)
Q Consensus 214 ~~i~~~~~iPVi~iA~GGI~-t~~d----~~~~l~-~GadgV~VGsai~~--a~dp~~~a~~l~~~i~ 273 (310)
+++.+...+||++ ++|+-. +.++ +..+++ .|+.|+.+|+.+++ ++||..+.+.+...++
T Consensus 230 ~~Vv~a~~vPVVi-aGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ~~~~dp~~~v~al~~iVH 296 (307)
T 3fok_A 230 ERVMESTTMPTLL-LGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLYPQDGDVAAAVDTAARLVH 296 (307)
T ss_dssp HHHGGGCSSCEEE-ECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSSCSSSCHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCEEE-eCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhccCCCCCHHHHHHHHHHHHH
Confidence 4555556799985 455543 4444 444556 69999999999999 9999999998888886
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.033 Score=49.93 Aligned_cols=85 Identities=14% Similarity=0.185 Sum_probs=61.1
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc-C-------Chhh
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY-S-------DPEV 280 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~-~-------~~~~ 280 (310)
..+.++.+++.+++||++ -..|.++.++.++..+|||+|+++.+.+. + ...+++.+..++. + ..+.
T Consensus 108 s~~~L~~ir~~v~lPVl~--Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~---~-~~l~~l~~~a~~lGl~~lvevh~~eE 181 (272)
T 3tsm_A 108 APEFLTAARQACSLPALR--KDFLFDPYQVYEARSWGADCILIIMASVD---D-DLAKELEDTAFALGMDALIEVHDEAE 181 (272)
T ss_dssp CHHHHHHHHHTSSSCEEE--ESCCCSTHHHHHHHHTTCSEEEEETTTSC---H-HHHHHHHHHHHHTTCEEEEEECSHHH
T ss_pred CHHHHHHHHHhcCCCEEE--CCccCCHHHHHHHHHcCCCEEEEcccccC---H-HHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 455678888888999984 57788999999999999999999998884 3 3445565555443 1 2222
Q ss_pred hhhhhhhcccchhcccCccc
Q 021609 281 LAEVSCGLGEAMVGLNLSDH 300 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~ 300 (310)
+ +....+|..+.|+|.++.
T Consensus 182 l-~~A~~~ga~iIGinnr~l 200 (272)
T 3tsm_A 182 M-ERALKLSSRLLGVNNRNL 200 (272)
T ss_dssp H-HHHTTSCCSEEEEECBCT
T ss_pred H-HHHHhcCCCEEEECCCCC
Confidence 2 234467888999987764
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.052 Score=50.44 Aligned_cols=111 Identities=16% Similarity=0.232 Sum_probs=72.3
Q ss_pred HHHHHHHHc--CCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeC
Q 021609 46 EQARVAEEA--GACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDES 121 (310)
Q Consensus 46 ~~A~~~~~~--Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~ 121 (310)
+.+..+.+. |++.+ ++++ .|.. ....+.++++++.+ ++|++++... ..++++.+.++|+|+|..+
T Consensus 121 ~~~~~l~~~~~g~~~i~i~~~---------~g~~-~~~~~~i~~lr~~~~~~~vi~g~v~-t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 121 EQLEQILEAIPQVKYICLDVA---------NGYS-EHFVEFVKDVRKRFPQHTIMAGNVV-TGEMVEELILSGADIIKVG 189 (351)
T ss_dssp HHHHHHHHHCTTCCEEEEECS---------CTTB-HHHHHHHHHHHHHCTTSEEEEEEEC-SHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhccCCCCEEEEEec---------CCCc-HHHHHHHHHHHHhcCCCeEEEEeCC-CHHHHHHHHHhCCCEEEEC
Confidence 556666666 89876 2331 1110 01146788888888 8999987543 4578999999999999522
Q ss_pred C-C-------------CCchhH-HHHHHh-cCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEcC
Q 021609 122 E-V-------------LTPADE-ENHINK-HNFRIPFVC--GCRNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 122 ~-~-------------~~~~~~-~~~i~~-~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~g 167 (310)
. . .+.... .+..+. ...++++++ ++.+..++.++..+||+.|.+..
T Consensus 190 ~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~ 253 (351)
T 2c6q_A 190 IGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGG 253 (351)
T ss_dssp SSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred CCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccH
Confidence 1 1 111111 122111 124688888 69999999999999999998754
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.19 Score=44.60 Aligned_cols=176 Identities=18% Similarity=0.129 Sum_probs=95.6
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc--CCccccccc--CCCCCCCCHHHHHHHHhhcCcceeeccccCc----HHHHHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE--RVPADIRSQ--GGVARMSDPQLIKEIKQSVTIPVMAKARIGH----FVEAQIL 110 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~--~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~----~~~a~~~ 110 (310)
+...-|+-.|+.++++|++++ .+. ......... ....+......++.|++.+++||++..-.++ ...++.+
T Consensus 24 ~~~ayD~~sA~~~~~aG~dai-~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~~~Gyg~~~~~~~~~l 102 (255)
T 2qiw_A 24 LPTVWDTWSAGLVEEAGFSGL-TIGSHPVADATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVESGYGLSPADLIAQI 102 (255)
T ss_dssp CCEESSHHHHHHHHHTTCSCE-EECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTTCTTCCHHHHHHHH
T ss_pred EecCcCHHHHHHHHHcCCCEE-EEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEeccCCCcCcHHHHHHHHH
Confidence 334457788999999999987 221 000000000 0000111134666777888999999754443 4567788
Q ss_pred HHcCCCEEEeCCC--------CCchhHHHHHHh---c----CCCCcEEEecCC-----------HH----HHHHHHHhCC
Q 021609 111 EAIGIDYVDESEV--------LTPADEENHINK---H----NFRIPFVCGCRN-----------LG----EALRRIREGA 160 (310)
Q Consensus 111 ~~aGad~Vi~~~~--------~~~~~~~~~i~~---~----~~~i~~~v~~~t-----------~~----ea~~~~~~Ga 160 (310)
.++||++|.+-+. .+..+..+.++. . +..+.+..-+.. .+ +++...++|+
T Consensus 103 ~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eAGA 182 (255)
T 2qiw_A 103 LEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQAGA 182 (255)
T ss_dssp HHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHHHHHHHTC
T ss_pred HHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHHHHHHcCC
Confidence 8899999942221 223344433332 1 222212221111 12 2333445677
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCH-HHHH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATP-ADAA 239 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~-~d~~ 239 (310)
|.|.+.+ .+..+.++++.+..++|+.+....+-.+| -++.
T Consensus 183 d~i~~e~---------------------------------------~~~~~~~~~i~~~~~~P~n~~~~~~~~~p~~~~~ 223 (255)
T 2qiw_A 183 RSVYPVG---------------------------------------LSTAEQVERLVDAVSVPVNITAHPVDGHGAGDLA 223 (255)
T ss_dssp SEEEECC---------------------------------------CCSHHHHHHHHTTCSSCBEEECBTTTBBTTBCHH
T ss_pred cEEEEcC---------------------------------------CCCHHHHHHHHHhCCCCEEEEecCCCCCCCCCHH
Confidence 7776643 12245677787777888875422332112 3455
Q ss_pred HHHHcCCCEEEEccc
Q 021609 240 MMMQLGCDGVFVGSG 254 (310)
Q Consensus 240 ~~l~~GadgV~VGsa 254 (310)
++.++|+.-|..|..
T Consensus 224 eL~~lGv~~v~~~~~ 238 (255)
T 2qiw_A 224 TLAGLGVRRVTFGPL 238 (255)
T ss_dssp HHHHTTCCEEECTTH
T ss_pred HHHHcCCCEEEEHHH
Confidence 667899999999877
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.025 Score=50.17 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=58.0
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc-cCC-------hhh
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH-YSD-------PEV 280 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~-~~~-------~~~ 280 (310)
..+.++.+++.+++||+ .-++|.++.++.+++.+|||+|.++.+.+. +. .+++....+. +++ .+.
T Consensus 94 ~~~~l~~i~~~v~lPvl--~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~-~~----l~~l~~~a~~lGl~~lvev~~~~E 166 (254)
T 1vc4_A 94 SLLDLKRVREAVDLPLL--RKDFVVDPFMLEEARAFGASAALLIVALLG-EL----TGAYLEEARRLGLEALVEVHTERE 166 (254)
T ss_dssp CHHHHHHHHHHCCSCEE--EESCCCSHHHHHHHHHTTCSEEEEEHHHHG-GG----HHHHHHHHHHHTCEEEEEECSHHH
T ss_pred CHHHHHHHHHhcCCCEE--ECCcCCCHHHHHHHHHcCCCEEEECccchH-HH----HHHHHHHHHHCCCeEEEEECCHHH
Confidence 35567778778899998 578999999999999999999999999885 32 3344442222 111 222
Q ss_pred hhhhhhhcccchhcccCccc
Q 021609 281 LAEVSCGLGEAMVGLNLSDH 300 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~ 300 (310)
+ +....+|..+.|+|.++.
T Consensus 167 ~-~~a~~~gad~IGvn~~~l 185 (254)
T 1vc4_A 167 L-EIALEAGAEVLGINNRDL 185 (254)
T ss_dssp H-HHHHHHTCSEEEEESBCT
T ss_pred H-HHHHHcCCCEEEEccccC
Confidence 2 234556778888877654
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.076 Score=45.49 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=74.6
Q ss_pred HHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCC
Q 021609 85 KEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAA 161 (310)
Q Consensus 85 ~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad 161 (310)
+.+++.-=+|++...... ..+.++.+.+.|++.+- .-......+..+.+++ .++....+ +-+.+++..+.+.|+|
T Consensus 8 ~~l~~~~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~--~~~~~gag~vl~~d~~~~A~~~GAd 85 (207)
T 2yw3_A 8 AVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRK--SGLLLGAGTVRSPKEAEAALEAGAA 85 (207)
T ss_dssp HHHHHHCEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTT--SSCEEEEESCCSHHHHHHHHHHTCS
T ss_pred HHHHhCCEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhC--CCCEEEeCeEeeHHHHHHHHHcCCC
Confidence 334433334444333322 24667888999999994 3222233455555544 55666555 4466889999999999
Q ss_pred EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHH
Q 021609 162 MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM 241 (310)
Q Consensus 162 ~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~ 241 (310)
++.... . +.+.++..++ ..+|++ + |+.|++++.++
T Consensus 86 ~v~~~~--~--------------------------------------d~~v~~~~~~-~g~~~i-~---G~~t~~e~~~A 120 (207)
T 2yw3_A 86 FLVSPG--L--------------------------------------LEEVAALAQA-RGVPYL-P---GVLTPTEVERA 120 (207)
T ss_dssp EEEESS--C--------------------------------------CHHHHHHHHH-HTCCEE-E---EECSHHHHHHH
T ss_pred EEEcCC--C--------------------------------------CHHHHHHHHH-hCCCEE-e---cCCCHHHHHHH
Confidence 985321 0 1122232333 356776 2 58999999999
Q ss_pred HHcCCCEEEE
Q 021609 242 MQLGCDGVFV 251 (310)
Q Consensus 242 l~~GadgV~V 251 (310)
.+.|+|.+.+
T Consensus 121 ~~~Gad~v~~ 130 (207)
T 2yw3_A 121 LALGLSALKF 130 (207)
T ss_dssp HHTTCCEEEE
T ss_pred HHCCCCEEEE
Confidence 9999999987
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0078 Score=54.13 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=59.2
Q ss_pred ccCCCHHHH--HHHHHcCCc---EEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHH
Q 021609 40 MDVVTPEQA--RVAEEAGAC---AVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 40 ~~~~~~~~A--~~~~~~Ga~---~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~ 112 (310)
.+.++++.| .+|..+|++ .+++|+.. . +..+++.++++++.+ ++|+++...+...++++.+.+
T Consensus 178 ~~~~~~e~A~~~aYa~~gad~G~~lV~LD~~---------~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~ 247 (286)
T 3vk5_A 178 VPVSTASTEEIDRYLHVARAFGFHMVYLYSR---------N-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLD 247 (286)
T ss_dssp CCCCCSSSHHHHHHHHHHHHTTCSEEEEECS---------S-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEcCC---------C-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHH
Confidence 344556666 666665554 45677411 1 345589999999999 899999998888899999999
Q ss_pred cCCCEEE-eCCCCCc--hhHHHH
Q 021609 113 IGIDYVD-ESEVLTP--ADEENH 132 (310)
Q Consensus 113 aGad~Vi-~~~~~~~--~~~~~~ 132 (310)
+|||.|+ ++..... .++.+.
T Consensus 248 aGAD~VVVGSAav~d~~Pelv~e 270 (286)
T 3vk5_A 248 SGADYVGFAGALEQPDWRSALAE 270 (286)
T ss_dssp TTCSEEEESGGGSSTTHHHHHHH
T ss_pred cCCCEEEECchhhcCCCHHHHHH
Confidence 9999996 5555555 455433
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.054 Score=48.86 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.1
Q ss_pred CCCEEEeCC-CCCCCHHHHHHHHH
Q 021609 221 RLPVVHFAA-GGVATPADAAMMMQ 243 (310)
Q Consensus 221 ~iPVi~iA~-GGI~t~~d~~~~l~ 243 (310)
++.|= |+ |||+|.+|+.++++
T Consensus 231 ~vgvK--As~GGIrt~e~A~~~i~ 252 (297)
T 4eiv_A 231 CIGIK--IEVGDVHMAETADFLMQ 252 (297)
T ss_dssp CCEEE--EECTTCCHHHHHHHHHH
T ss_pred ceeEE--ecCCCCCCHHHHHHHHH
Confidence 45666 78 99999999999998
|
| >2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.087 Score=48.93 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=41.3
Q ss_pred HHHHhhc-CCCCEEEeCCCCCCC-HHHHHHHHHcCCC------EEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 213 VMQTKQL-GRLPVVHFAAGGVAT-PADAAMMMQLGCD------GVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 213 i~~i~~~-~~iPVi~iA~GGI~t-~~d~~~~l~~Gad------gV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
++.+++. .+.+++. -||+- ..|..++++.|+| .++|||+|++++||...++++.+.++.
T Consensus 280 l~~IR~~~~~~~iLt---PGIgaqGGD~~~a~~~Gad~~~~~~iIvVGR~I~~A~dp~~AA~~i~~ei~~ 346 (353)
T 2ffc_A 280 IKKIRELFPDCYILA---PGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIKE 346 (353)
T ss_dssp HHHHHHHCTTCCEEE---CCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEEe---CcccCCCCCHHHHHHcCCCcccCcEEEEECHHHcCCCCHHHHHHHHHHHHHH
Confidence 3444432 3556653 34421 1245556778898 899999999999999999999998864
|
| >3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ... | Back alignment and structure |
|---|
Probab=95.74 E-value=0.034 Score=49.58 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=29.5
Q ss_pred HHHHH-HcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 238 AAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 238 ~~~~l-~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
..+++ +.|+|.++|||.|++++||...++++++.
T Consensus 215 p~~a~~~aGad~iVvGR~I~~a~dp~~a~~~~~~~ 249 (260)
T 3eww_A 215 PQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKA 249 (260)
T ss_dssp HHHHHTTSCCSEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEChhhcCCCCHHHHHHHHHHH
Confidence 55557 89999999999999999999999888753
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.14 Score=46.23 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=97.8
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc--CCccccccc--CCCCCCCCHHHHHHHHhhcCcceeeccccCc------HHHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE--RVPADIRSQ--GGVARMSDPQLIKEIKQSVTIPVMAKARIGH------FVEAQ 108 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~--~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~------~~~a~ 108 (310)
+...-|+-.|+.++++|++++ -+. ......... +...+......++.|.+.+++||++..-.++ ...++
T Consensus 19 ~~~a~D~~sA~~~~~aG~~ai-~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~v~ 97 (290)
T 2hjp_A 19 AMAAHNPLVAKLAEQAGFGGI-WGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVP 97 (290)
T ss_dssp EEECSSHHHHHHHHHHTCSEE-EECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHcCCCEE-EEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHH
Confidence 444557788999999999987 221 000000000 0010111234666777888999988644332 35567
Q ss_pred HHHHcCCCEEEeCCC---------------C-CchhHHHHHHh---c--CCCCcEEEecCC------HHH----HHHHHH
Q 021609 109 ILEAIGIDYVDESEV---------------L-TPADEENHINK---H--NFRIPFVCGCRN------LGE----ALRRIR 157 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~---------------~-~~~~~~~~i~~---~--~~~i~~~v~~~t------~~e----a~~~~~ 157 (310)
.+.++||.+|.+-+. + +..+..+.++. . ..+..+..-... .++ ++...+
T Consensus 98 ~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~e 177 (290)
T 2hjp_A 98 QYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEE 177 (290)
T ss_dssp HHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHHHHHHH
Confidence 788899999942111 2 22233333332 1 123333332221 233 344457
Q ss_pred hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC--CCEEEeC-CCCCCC
Q 021609 158 EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR--LPVVHFA-AGGVAT 234 (310)
Q Consensus 158 ~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~--iPVi~iA-~GGI~t 234 (310)
+|+|.|.+.+.. ++.+.++++.+..+ +|+++.. ++..-
T Consensus 178 AGAd~i~~e~~~--------------------------------------~~~~~~~~i~~~~~~~vP~i~n~~~~~~~- 218 (290)
T 2hjp_A 178 AGADAILIHSRQ--------------------------------------KTPDEILAFVKSWPGKVPLVLVPTAYPQL- 218 (290)
T ss_dssp TTCSEEEECCCC--------------------------------------SSSHHHHHHHHHCCCSSCEEECGGGCTTS-
T ss_pred cCCcEEEeCCCC--------------------------------------CCHHHHHHHHHHcCCCCCEEEeccCCCCC-
Confidence 799988876521 11234555666566 8998421 12222
Q ss_pred HHHHHHHHHcC-CCEEEEcccccc
Q 021609 235 PADAAMMMQLG-CDGVFVGSGVFK 257 (310)
Q Consensus 235 ~~d~~~~l~~G-adgV~VGsai~~ 257 (310)
+..++-++| +.-|..|..+++
T Consensus 219 --~~~eL~~lG~v~~v~~~~~~~r 240 (290)
T 2hjp_A 219 --TEADIAALSKVGIVIYGNHAIR 240 (290)
T ss_dssp --CHHHHHTCTTEEEEEECSHHHH
T ss_pred --CHHHHHhcCCeeEEEechHHHH
Confidence 456667899 999999999886
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.78 Score=41.58 Aligned_cols=178 Identities=16% Similarity=0.091 Sum_probs=95.3
Q ss_pred ccCCCHHHHHHHHHcCCcEEEe--ccCCcccccccCCCCCCCC---HHHHHHHHhhc-CcceeeccccCc------HHHH
Q 021609 40 MDVVTPEQARVAEEAGACAVMA--LERVPADIRSQGGVARMSD---PQLIKEIKQSV-TIPVMAKARIGH------FVEA 107 (310)
Q Consensus 40 ~~~~~~~~A~~~~~~Ga~~i~~--L~~~~~~~~~~~G~~~~~~---~~~i~~i~~~~-~iPv~vk~~~~~------~~~a 107 (310)
..+-|.-.|+.++++|++++.. ..-.......... ..... ...++.|++.. ++||++..-.++ ...+
T Consensus 23 ~~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~-~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~~~~v~~tv 101 (302)
T 3fa4_A 23 PGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADL-GICTLNDMRANAEMISNISPSTPVIADADTGYGGPIMVARTT 101 (302)
T ss_dssp EEECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSS-SCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSSHHHHHHHH
T ss_pred ecCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCC-CcCCHHHHHHHHHHHHhhccCCCEEEECCCCCCCHHHHHHHH
Confidence 4566788899999999998721 1000000000000 01111 23555666654 899999754442 2456
Q ss_pred HHHHHcCCCEEEeCCC--------------CCchhHHHHHHh-------cCCCCcEEEecCCH-----HHH----HHHHH
Q 021609 108 QILEAIGIDYVDESEV--------------LTPADEENHINK-------HNFRIPFVCGCRNL-----GEA----LRRIR 157 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~~--------------~~~~~~~~~i~~-------~~~~i~~~v~~~t~-----~ea----~~~~~ 157 (310)
+.+.++|+.+|.+-+. .+..+....++. .+.++.+++-+... +++ +...+
T Consensus 102 ~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay~e 181 (302)
T 3fa4_A 102 EQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARLRAARD 181 (302)
T ss_dssp HHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHHHHT
T ss_pred HHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHHHHHHHHHHH
Confidence 7888899999942221 123343333322 13444444433322 332 22345
Q ss_pred hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEE-eCCCCCCCH
Q 021609 158 EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVH-FAAGGVATP 235 (310)
Q Consensus 158 ~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~-iA~GGI~t~ 235 (310)
+|+|.|.+.+.. +.+.++++++.. ..|+++ +..+|-...
T Consensus 182 AGAD~ifi~g~~---------------------------------------~~~ei~~~~~~~~~~Pl~~n~~~~g~~p~ 222 (302)
T 3fa4_A 182 AGADVGFLEGIT---------------------------------------SREMARQVIQDLAGWPLLLNMVEHGATPS 222 (302)
T ss_dssp TTCSEEEETTCC---------------------------------------CHHHHHHHHHHTTTSCEEEECCTTSSSCC
T ss_pred cCCCEEeecCCC---------------------------------------CHHHHHHHHHHhcCCceeEEEecCCCCCC
Confidence 688888776421 123345555544 368754 123442211
Q ss_pred HHHHHHHHcCCCEEEEcccccc
Q 021609 236 ADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 236 ~d~~~~l~~GadgV~VGsai~~ 257 (310)
-...++.++|+.-|+.+..+++
T Consensus 223 ~~~~eL~~lGv~~v~~~~~~~r 244 (302)
T 3fa4_A 223 ISAAEAKEMGFRIIIFPFAALG 244 (302)
T ss_dssp CCHHHHHHHTCSEEEETTTTHH
T ss_pred CCHHHHHHcCCCEEEEchHHHH
Confidence 2455667889999999998886
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.74 Score=41.45 Aligned_cols=193 Identities=15% Similarity=0.174 Sum_probs=115.4
Q ss_pred ccCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHh--hcCcceeeccccC-cHHHHHHHHH
Q 021609 40 MDVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQ--SVTIPVMAKARIG-HFVEAQILEA 112 (310)
Q Consensus 40 ~~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~--~~~iPv~vk~~~~-~~~~a~~~~~ 112 (310)
.++.+.+. .+++++.+..-|+++.+. ..+...|.. .....++.+.+ ..++||.+.+--+ +++.+..+.+
T Consensus 26 fNv~n~e~~~avi~AAee~~sPvIlq~s~~--~~~~~~g~~--~~~~~v~~~A~~~~~~VPValHlDHg~~~e~i~~ai~ 101 (288)
T 3q94_A 26 FNMNNLEWTQAILAAAEEEKSPVILGVSEG--AARHMTGFK--TVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAID 101 (288)
T ss_dssp EECCSHHHHHHHHHHHHHTTCCEEEEEEHH--HHHHTSCHH--HHHHHHHHHHHHTTCCSCEEEEEEEECSHHHHHHHHH
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEECChh--hhhhcCCHH--HHHHHHHHHHHhcCCCCcEEEECCCCCCHHHHHHHHH
Confidence 34555654 445577888876666211 111101110 01244555666 6899999864333 5788899999
Q ss_pred cCCCEEE--eCCCCCch-------hHHHHHHhcCCCCcEEE-----------------ecCCHHHHHHHH-HhCCCEEEE
Q 021609 113 IGIDYVD--ESEVLTPA-------DEENHINKHNFRIPFVC-----------------GCRNLGEALRRI-REGAAMIRT 165 (310)
Q Consensus 113 aGad~Vi--~~~~~~~~-------~~~~~i~~~~~~i~~~v-----------------~~~t~~ea~~~~-~~Gad~V~v 165 (310)
+|.+-|- .+. ++.+ ++.++..+ .++.+=. -.++++++.+-. +.|+|.+.+
T Consensus 102 ~GFtSVMiDgS~-~p~eeNi~~Tk~vv~~ah~--~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAv 178 (288)
T 3q94_A 102 AGFTSVMIDASH-HPFEENVETTKKVVEYAHA--RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAP 178 (288)
T ss_dssp HTCSEEEECCTT-SCHHHHHHHHHHHHHHHHT--TTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEE
T ss_pred cCCCeEEEeCCC-CCHHHHHHHHHHHHHHHHH--cCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEE
Confidence 9999993 333 2322 33333332 2221110 136789998866 689999876
Q ss_pred cCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC
Q 021609 166 KGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG 245 (310)
Q Consensus 166 ~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G 245 (310)
.-..--| .++. ...-+++.++++++.+++|++.=.+.|+ ..+++.++++.|
T Consensus 179 aiGt~HG-----------------~Y~~-----------~p~Ld~~~L~~I~~~v~vpLVlHGgSG~-~~e~i~~ai~~G 229 (288)
T 3q94_A 179 ALGSVHG-----------------PYKG-----------EPNLGFAEMEQVRDFTGVPLVLHGGTGI-PTADIEKAISLG 229 (288)
T ss_dssp CSSCBSS-----------------CCSS-----------SCCCCHHHHHHHHHHHCSCEEECCCTTC-CHHHHHHHHHTT
T ss_pred EcCcccC-----------------CcCC-----------CCccCHHHHHHHHHhcCCCEEEeCCCCC-CHHHHHHHHHcC
Confidence 4211101 1110 1234588899998888899886456677 578999999999
Q ss_pred CCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 246 CDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 246 adgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
..=|=+++.+-. ...+.+++.+.
T Consensus 230 v~KiNi~Tdl~~-----a~~~~~r~~~~ 252 (288)
T 3q94_A 230 TSKINVNTENQI-----EFTKAVREVLN 252 (288)
T ss_dssp EEEEEECHHHHH-----HHHHHHHHHHH
T ss_pred CeEEEEChHHHH-----HHHHHHHHHHH
Confidence 999999988763 34444555443
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.013 Score=52.16 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=45.7
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCC-----HHHHHHHHHHHHh
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD-----PVKRAQAIVRAVT 273 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~d-----p~~~a~~l~~~i~ 273 (310)
.+.++++.+...+|+. ..|||++. ++.+++ +||+-|++||+.++ | | ...+++.+.+.
T Consensus 65 ~~~i~~i~~~~~~pv~--vgGGir~~-~~~~~l-~Ga~~Viigs~a~~--~~g~~~p-~~~~~~~~~~g 126 (260)
T 2agk_A 65 DDAAREALQESPQFLQ--VGGGINDT-NCLEWL-KWASKVIVTSWLFT--KEGHFQL-KRLERLTELCG 126 (260)
T ss_dssp HHHHHHHHHHSTTTSE--EESSCCTT-THHHHT-TTCSCEEECGGGBC--TTCCBCH-HHHHHHHHHHC
T ss_pred HHHHHHHHhcCCceEE--EeCCCCHH-HHHHHh-cCCCEEEECcHHHh--hcCCCCH-HHHHHHHHHhC
Confidence 5567777777789998 47999987 999999 99999999999997 6 7 45455666653
|
| >2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.036 Score=49.31 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCH
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp 261 (310)
+++|+ -.|+| +++++.+++ ..+.||++||++-++++++
T Consensus 202 ~vrIl--YGGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~~F 240 (259)
T 2i9e_A 202 SIRIQ--YGGSV-TAANCKELASQPDIDGFLVGGASLKPEFV 240 (259)
T ss_dssp HCEEE--ECSCC-CTTTHHHHHTSTTCCEEEESGGGGSTHHH
T ss_pred cccEE--EcCCC-CHhhHHHHhcCCCCCeeeechHhhChHHH
Confidence 47888 46888 588888877 6799999999999985553
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.074 Score=47.26 Aligned_cols=70 Identities=21% Similarity=0.250 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHh-hcC-cceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 43 VTPEQARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQ-SVT-IPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~-~~~-iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.|+..++++++.|++.+..+. ..-|+.. ..+++.++.+++ ..+ +||++...++.-+++..+.+.|+|+|+
T Consensus 133 ~D~~~ak~l~~~G~~aVmPlg-------~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVl 205 (268)
T 2htm_A 133 PDLVLAKRLAALGTATVMPLA-------APIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVL 205 (268)
T ss_dssp SCHHHHHHHHHHTCSCBEEBS-------SSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHhcCCCEEEecC-------ccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 578999999999999875441 1122322 446888999988 678 999998888877899999999999996
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.3 Score=44.71 Aligned_cols=117 Identities=20% Similarity=0.183 Sum_probs=75.5
Q ss_pred cCcceeec--cccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-cC-CCCcEEEe--c--CC-HHHHHHHHHhCCC
Q 021609 91 VTIPVMAK--ARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINK-HN-FRIPFVCG--C--RN-LGEALRRIREGAA 161 (310)
Q Consensus 91 ~~iPv~vk--~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~~-~~i~~~v~--~--~t-~~ea~~~~~~Gad 161 (310)
...|++.. ..+...+.+..+.++|.-+++.....++.++.+.+++ .. .+.++.+. + .+ .+.+..+.+.|++
T Consensus 25 ~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d 104 (326)
T 3bo9_A 25 IEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVP 104 (326)
T ss_dssp CSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCS
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCC
Confidence 57888763 2333567888889999888875555566666555544 21 23444443 2 12 3445556688999
Q ss_pred EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHH
Q 021609 162 MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM 241 (310)
Q Consensus 162 ~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~ 241 (310)
+|.++... |.+.++.+++ ..+|++ .++.+++++.++
T Consensus 105 ~V~l~~g~---------------------------------------p~~~~~~l~~-~g~~v~----~~v~s~~~a~~a 140 (326)
T 3bo9_A 105 VVTFGAGN---------------------------------------PTKYIRELKE-NGTKVI----PVVASDSLARMV 140 (326)
T ss_dssp EEEEESSC---------------------------------------CHHHHHHHHH-TTCEEE----EEESSHHHHHHH
T ss_pred EEEECCCC---------------------------------------cHHHHHHHHH-cCCcEE----EEcCCHHHHHHH
Confidence 99876421 1234455555 356776 367889999999
Q ss_pred HHcCCCEEEE
Q 021609 242 MQLGCDGVFV 251 (310)
Q Consensus 242 l~~GadgV~V 251 (310)
.+.|+|++++
T Consensus 141 ~~~GaD~i~v 150 (326)
T 3bo9_A 141 ERAGADAVIA 150 (326)
T ss_dssp HHTTCSCEEE
T ss_pred HHcCCCEEEE
Confidence 9999999998
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.098 Score=47.09 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=55.0
Q ss_pred CcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc
Q 021609 140 IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL 219 (310)
Q Consensus 140 i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~ 219 (310)
+..=+.+.+.+++..+.+.|+|.|-+-..... -+.+|+..+++.+++.
T Consensus 40 ~~lEvc~~s~~~a~~A~~gGAdRIELc~~l~~--------------------------------GGlTPS~g~i~~a~~~ 87 (287)
T 3iwp_A 40 FLMEVCVDSVESAVNAERGGADRIELCSGLSE--------------------------------GGTTPSMGVLQVVKQS 87 (287)
T ss_dssp SEEEEEESSHHHHHHHHHHTCSEEEECBCGGG--------------------------------TCBCCCHHHHHHHHTT
T ss_pred ceEEEEeCCHHHHHHHHHhCCCEEEECCCCCC--------------------------------CCCCCCHHHHHHHHHh
Confidence 44445678999999999999999876532110 0235567778888777
Q ss_pred CCCCEEEe--CCCC-CC-C-------HHHHHHHHHcCCCEEEEc
Q 021609 220 GRLPVVHF--AAGG-VA-T-------PADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 220 ~~iPVi~i--A~GG-I~-t-------~~d~~~~l~~GadgV~VG 252 (310)
.++||.+. .-|| .- | .+|+..+.++|||||++|
T Consensus 88 ~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG 131 (287)
T 3iwp_A 88 VQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADGLVFG 131 (287)
T ss_dssp CCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 78888763 2233 21 2 147778888899999888
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.067 Score=48.20 Aligned_cols=87 Identities=11% Similarity=0.166 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHH-------HHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQ-------LIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~-------~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.+.||+.| +++...+.. |+......+ .++.+++.+++|+.+..+ ..+.++.+.++|++.|
T Consensus 42 ~~a~~~v~~GAdiI-DIGgestrP----ga~~v~~~eE~~rv~pvi~~l~~~~~~piSIDT~--~~~va~aAl~aGa~iI 114 (282)
T 1aj0_A 42 KHANLMINAGATII-DVGGESTRP----GAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTS--KPEVIRESAKVGAHII 114 (282)
T ss_dssp HHHHHHHHHTCSEE-EEESSCCST----TCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC--CHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHCCCCEE-EECCCcCCC----CCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEeCC--CHHHHHHHHHcCCCEE
Confidence 56888999999976 775222111 111111122 444445566999998665 3477899999999999
Q ss_pred E-eCCCCCchhHHHHHHhcCCCC
Q 021609 119 D-ESEVLTPADEENHINKHNFRI 140 (310)
Q Consensus 119 i-~~~~~~~~~~~~~i~~~~~~i 140 (310)
- .+.. ..++..+.+++++..+
T Consensus 115 Ndvsg~-~d~~~~~~~a~~~~~v 136 (282)
T 1aj0_A 115 NDIRSL-SEPGALEAAAETGLPV 136 (282)
T ss_dssp EETTTT-CSTTHHHHHHHHTCCE
T ss_pred EECCCC-CCHHHHHHHHHhCCeE
Confidence 4 3332 4445556665544433
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.89 Score=41.29 Aligned_cols=179 Identities=12% Similarity=0.039 Sum_probs=94.7
Q ss_pred cccCCCHHHHHHHHHcCCcEEEe--ccCCcccccccCCCCCCC---CHHHHHHHHhhc--CcceeeccccCc------HH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMA--LERVPADIRSQGGVARMS---DPQLIKEIKQSV--TIPVMAKARIGH------FV 105 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~--L~~~~~~~~~~~G~~~~~---~~~~i~~i~~~~--~iPv~vk~~~~~------~~ 105 (310)
+...-|.-.|+.++++|++++.. ..-......... ..... ....++.+++.+ ++||++..-.++ ..
T Consensus 29 ~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD-~~~vt~~em~~~~~~i~r~~~~~~PviaD~d~Gyg~~~~v~~ 107 (307)
T 3lye_A 29 CPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPD-LAIAQLHDMRDNADMIANLDPFGPPLIADMDTGYGGPIMVAR 107 (307)
T ss_dssp EEEECSHHHHHHHHHTTCSCEEECHHHHHHHHHCCCS-SSCSCHHHHHHHHHHHHTSSTTSCCEEEECTTCSSSHHHHHH
T ss_pred EecCcCHHHHHHHHHcCCCEEEeccHHHHHHhcCCCC-CCCCCHHHHHHHHHhhhccCCCCCcEEEECCCCCCCHHHHHH
Confidence 34566788999999999998721 100000000000 00111 123555666655 499999754442 34
Q ss_pred HHHHHHHcCCCEEEeCCC--------------CCchhHHHHHHh-------cCCCCcEEEecCCH-----HH----HHHH
Q 021609 106 EAQILEAIGIDYVDESEV--------------LTPADEENHINK-------HNFRIPFVCGCRNL-----GE----ALRR 155 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~--------------~~~~~~~~~i~~-------~~~~i~~~v~~~t~-----~e----a~~~ 155 (310)
.++.+.++||.+|.+-+. .+..+....++. .+.++.+++-+... ++ ++..
T Consensus 108 ~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay 187 (307)
T 3lye_A 108 TVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIERLRAA 187 (307)
T ss_dssp HHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHHHH
Confidence 567888999999942221 123333333322 13444454443332 22 2223
Q ss_pred HHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEE-eCCCCCC
Q 021609 156 IREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVH-FAAGGVA 233 (310)
Q Consensus 156 ~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~-iA~GGI~ 233 (310)
.++|+|.|.+.+.. +.+.++++.+.. .+|+++ +..+|-.
T Consensus 188 ~eAGAD~ifi~~~~---------------------------------------~~~~~~~i~~~~~~~Pv~~n~~~~g~~ 228 (307)
T 3lye_A 188 RDEGADVGLLEGFR---------------------------------------SKEQAAAAVAALAPWPLLLNSVENGHS 228 (307)
T ss_dssp HHTTCSEEEECCCS---------------------------------------CHHHHHHHHHHHTTSCBEEEEETTSSS
T ss_pred HHCCCCEEEecCCC---------------------------------------CHHHHHHHHHHccCCceeEEeecCCCC
Confidence 56788888776421 123344454433 367753 1244422
Q ss_pred CHHHHHHHHHcCCCEEEEcccccc
Q 021609 234 TPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 234 t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
..-...++.++|+.-|+.+..+++
T Consensus 229 p~~t~~eL~~lGv~~v~~~~~~~r 252 (307)
T 3lye_A 229 PLITVEEAKAMGFRIMIFSFATLA 252 (307)
T ss_dssp CCCCHHHHHHHTCSEEEEETTTHH
T ss_pred CCCCHHHHHHcCCeEEEEChHHHH
Confidence 112456667889999999988886
|
| >1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.13 Score=45.48 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=30.7
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEccccccCCC
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGD 260 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~a~d 260 (310)
+++|++ .|+| +++|+.+++.. +.||++||++-+++++
T Consensus 204 ~vrIlY--GGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~~ 241 (250)
T 1yya_A 204 RVRILY--GGSV-NPKNFADLLSMPNVDGGLVGGASLELES 241 (250)
T ss_dssp TCEEEE--ESSC-CTTTHHHHHTSTTCCEEEESGGGSSHHH
T ss_pred ceeEEE--cCCC-CHHHHHHHHcCCCCCeeEeeHHHhChHH
Confidence 588883 6888 57999999965 9999999999997443
|
| >3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A | Back alignment and structure |
|---|
Probab=95.13 E-value=1.1 Score=39.99 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=52.6
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCCcccccccC-CCCCCCC----HHHHHHHHhhc-CcceeeccccC-c------HH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERVPADIRSQG-GVARMSD----PQLIKEIKQSV-TIPVMAKARIG-H------FV 105 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~-G~~~~~~----~~~i~~i~~~~-~iPv~vk~~~~-~------~~ 105 (310)
+...=|+..|+.++++|++.+ -.-..-... ..| -+..... ...++.+++.+ +.||++....+ + ..
T Consensus 33 m~tayDa~sA~l~e~aG~d~i-lvGdSl~~~-~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY~s~~~a~~ 110 (275)
T 3vav_A 33 MLTCYDASFAALLDRANVDVQ-LIGDSLGNV-LQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFA 110 (275)
T ss_dssp EEECCSHHHHHHHHHTTCSEE-EECTTHHHH-TTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSCSSHHHHHH
T ss_pred EEeCcCHHHHHHHHHcCCCEE-EECcHHHHH-HcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCCCCCCCHHHHHH
Confidence 444557789999999999987 211000000 001 0101111 23456677777 48888875543 2 23
Q ss_pred HHHHHHHcCCCEEEeCCCCCchhHHHHHHh
Q 021609 106 EAQILEAIGIDYVDESEVLTPADEENHINK 135 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~ 135 (310)
.+..+.++||++|-+-+...+.+.++.+.+
T Consensus 111 ~a~rl~kaGa~aVklEdg~~~~~~i~~l~~ 140 (275)
T 3vav_A 111 SAVKLMRAGAQMVKFEGGEWLAETVRFLVE 140 (275)
T ss_dssp HHHHHHHTTCSEEEEECCGGGHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCchhHHHHHHHHHH
Confidence 345677789999954444445555555554
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.58 Score=40.23 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=71.3
Q ss_pred CHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEE--Ee
Q 021609 44 TPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYV--DE 120 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~V--i~ 120 (310)
+.+.+..+.++||+.+ .+.... ..+. .| ....+.++.+++.+ +.++.+... ..+.++.+.++|+|.| ..
T Consensus 90 ~~~~i~~~~~~Gad~V-~l~~~~-~~~~-~~---~~~~~~i~~i~~~~~~~~v~~~~~--t~~ea~~a~~~Gad~i~~~v 161 (234)
T 1yxy_A 90 TMTEVDQLAALNIAVI-AMDCTK-RDRH-DG---LDIASFIRQVKEKYPNQLLMADIS--TFDEGLVAHQAGIDFVGTTL 161 (234)
T ss_dssp SHHHHHHHHTTTCSEE-EEECCS-SCCT-TC---CCHHHHHHHHHHHCTTCEEEEECS--SHHHHHHHHHTTCSEEECTT
T ss_pred hHHHHHHHHHcCCCEE-EEcccc-cCCC-CC---ccHHHHHHHHHHhCCCCeEEEeCC--CHHHHHHHHHcCCCEEeeec
Confidence 4578999999999987 442000 0000 00 01146788888776 677766543 3467888999999999 31
Q ss_pred C---CC---CCc--hhHHHHHHhcCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEc
Q 021609 121 S---EV---LTP--ADEENHINKHNFRIPFVC--GCRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 121 ~---~~---~~~--~~~~~~i~~~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~ 166 (310)
. .. ... .+..+.+.+. ++++++ +++|.+++..+.++|+|.+.+.
T Consensus 162 ~g~~~~~~~~~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 162 SGYTPYSRQEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp TTSSTTSCCSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred cccCCCCcCCCCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 1 11 111 2333344333 666666 4888999999999999999874
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.063 Score=46.89 Aligned_cols=85 Identities=15% Similarity=0.103 Sum_probs=60.1
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEecc--CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCC
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMALE--RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGI 115 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGa 115 (310)
.+.++.+.+.++.+++.|++.| ..+ ......+ ....+++.++++++. ++|+++...+...+++..+.++||
T Consensus 132 v~~~v~t~eea~~a~~~Gad~I-g~~~~g~t~~~~-----~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~~~Ga 204 (232)
T 3igs_A 132 TMADCSSVDDGLACQRLGADII-GTTMSGYTTPDT-----PEEPDLPLVKALHDA-GCRVIAEGRYNSPALAAEAIRYGA 204 (232)
T ss_dssp EEEECCSHHHHHHHHHTTCSEE-ECTTTTSSSSSC-----CSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHHTTC
T ss_pred EEEeCCCHHHHHHHHhCCCCEE-EEcCccCCCCCC-----CCCCCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCC
Confidence 4567788899999999999987 322 1111001 123457899999887 999999888876788999999999
Q ss_pred CEEE-eCCCCCchhH
Q 021609 116 DYVD-ESEVLTPADE 129 (310)
Q Consensus 116 d~Vi-~~~~~~~~~~ 129 (310)
|+|. ++....+.+.
T Consensus 205 dgV~VGsal~~p~~~ 219 (232)
T 3igs_A 205 WAVTVGSAITRLEHI 219 (232)
T ss_dssp SEEEECHHHHCHHHH
T ss_pred CEEEEehHhcCHHHH
Confidence 9996 4333344433
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.066 Score=46.68 Aligned_cols=85 Identities=14% Similarity=0.089 Sum_probs=60.1
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEecc--CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCC
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMALE--RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGI 115 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGa 115 (310)
.+.++.+.+.++.+++.|++.| ..+ ...... .....+++.++++++. ++|+++...+...+++..+.++||
T Consensus 132 v~~~v~t~eea~~a~~~Gad~I-g~~~~g~t~~~-----~~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~~Ga 204 (229)
T 3q58_A 132 AMADCSTVNEGISCHQKGIEFI-GTTLSGYTGPI-----TPVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANAIEHGA 204 (229)
T ss_dssp EEEECSSHHHHHHHHHTTCSEE-ECTTTTSSSSC-----CCSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHHHHTTC
T ss_pred EEEecCCHHHHHHHHhCCCCEE-EecCccCCCCC-----cCCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHcCC
Confidence 4667788999999999999987 322 110000 0123457889999887 999999888877788999999999
Q ss_pred CEEE-eCCCCCchhH
Q 021609 116 DYVD-ESEVLTPADE 129 (310)
Q Consensus 116 d~Vi-~~~~~~~~~~ 129 (310)
|+|. ++....+...
T Consensus 205 dgV~VGsai~~p~~~ 219 (229)
T 3q58_A 205 WAVTVGSAITRIEHI 219 (229)
T ss_dssp SEEEECHHHHCHHHH
T ss_pred CEEEEchHhcChHHH
Confidence 9996 4333334433
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.95 E-value=1 Score=40.32 Aligned_cols=174 Identities=18% Similarity=0.189 Sum_probs=99.4
Q ss_pred HHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCC
Q 021609 46 EQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~ 122 (310)
++|+++.++|++.+ .+.. |-... ..+.|.. ..-++.++++++..++|+..-.. +...++.+.+. +|.+ +.+.
T Consensus 56 ~~a~~~k~~ga~~~k~~~~kprts~-~~f~g~g-~~gl~~l~~~~~~~Gl~~~te~~--d~~~~~~l~~~-vd~~kIgs~ 130 (276)
T 1vs1_A 56 EAALAVKEAGAHMLRGGAFKPRTSP-YSFQGLG-LEGLKLLRRAGDEAGLPVVTEVL--DPRHVETVSRY-ADMLQIGAR 130 (276)
T ss_dssp HHHHHHHHHTCSEEECBSSCCCSST-TSCCCCT-HHHHHHHHHHHHHHTCCEEEECC--CGGGHHHHHHH-CSEEEECGG
T ss_pred HHHHHHHHhCCCEEEeEEEeCCCCh-hhhcCCC-HHHHHHHHHHHHHcCCcEEEecC--CHHHHHHHHHh-CCeEEECcc
Confidence 46777788999986 3332 11110 1111110 11245666667778999986543 23456667777 8998 5666
Q ss_pred CCCchhHHHHHHhcCCCCcEEEe--cC-CHHHHHHHHH----hCC-CEEEEc-CC-CCCcchHHHHHHHHhhccceEeec
Q 021609 123 VLTPADEENHINKHNFRIPFVCG--CR-NLGEALRRIR----EGA-AMIRTK-GE-AGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~--~~-t~~ea~~~~~----~Ga-d~V~v~-g~-~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
.+...++.+.+.. .+.+++++ .. |.+|...+.+ .|. +++-++ |. .+ +
T Consensus 131 ~~~n~~ll~~~a~--~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~y---------------------p 187 (276)
T 1vs1_A 131 NMQNFPLLREVGR--SGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTF---------------------E 187 (276)
T ss_dssp GTTCHHHHHHHHH--HTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCS---------------------C
T ss_pred cccCHHHHHHHHc--cCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCC---------------------C
Confidence 6777777777654 35666665 43 6788776654 465 566555 42 12 1
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCC--CCCCC--HHHHHHHHHcCCCEEEEccccc
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~--GGI~t--~~d~~~~l~~GadgV~VGsai~ 256 (310)
+.. ....++..+..+++..++||+..++ +|.+. ..-...+..+||+|+++=+-+.
T Consensus 188 ~y~---------~~~vdl~~i~~lk~~~~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~~ 246 (276)
T 1vs1_A 188 PST---------RFTLDVAAVAVLKEATHLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHPN 246 (276)
T ss_dssp CSS---------SSBCBHHHHHHHHHHBSSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCSS
T ss_pred CcC---------cchhCHHHHHHHHHHhCCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Confidence 100 1123455566677756789863211 14322 2334445678999999887663
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=94.90 E-value=0.42 Score=44.03 Aligned_cols=208 Identities=13% Similarity=0.091 Sum_probs=114.9
Q ss_pred HHHHHHHHcCCcEEEecc---CCcc-cccccCCCCCCCCHHHHHHHHhh-cCcceeecc-c-cCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALE---RVPA-DIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKA-R-IGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~-~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~-~-~~~~~~a~~~~~aGad~V 118 (310)
+.++.+.++|++.| ++- ..|. ...+ |.......+.++++++. .++|+.+-. . .+..++++.+.++|+|.+
T Consensus 34 ~i~~~L~~~Gvd~I-EvG~~~g~p~ssp~~--g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v 110 (345)
T 1nvm_A 34 AIARALDKAKVDSI-EVAHGDGLQGSSFNY--GFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVV 110 (345)
T ss_dssp HHHHHHHHHTCSEE-ECSCTTSTTCCBTTT--BCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHcCCCEE-EEecCCCCCCCCCcc--cCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEE
Confidence 57889999999976 551 0000 0011 22223446778788765 367776652 1 234678899999999999
Q ss_pred EeCCCC----CchhHHHHHHhcCCCCcEEEe---cCCHHH----HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 119 DESEVL----TPADEENHINKHNFRIPFVCG---CRNLGE----ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 119 i~~~~~----~~~~~~~~i~~~~~~i~~~v~---~~t~~e----a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
.+.... ...+..+.+++++..+...++ -.+.+. ++.+.+.|++.|.+....+...
T Consensus 111 ~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~-------------- 176 (345)
T 1nvm_A 111 RVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMS-------------- 176 (345)
T ss_dssp EEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCC--------------
T ss_pred EEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCccC--------------
Confidence 533222 344556666656555444432 123433 3334567999888765433211
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEe--CCCCCCCHHHHHHHHHcCCCEEEEcc-ccc-cCCCH
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHF--AAGGVATPADAAMMMQLGCDGVFVGS-GVF-KSGDP 261 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~i--A~GGI~t~~d~~~~l~~GadgV~VGs-ai~-~a~dp 261 (310)
|+. ..++++.+++.. ++|+-+= -.-|. ...+...++++||+.|=..= .+= ++.|+
T Consensus 177 --------P~~----------v~~lv~~l~~~~~~~~pi~~H~Hn~~G~-avAn~laA~~aGa~~vd~tv~GlG~~aGN~ 237 (345)
T 1nvm_A 177 --------MND----------IRDRMRAFKAVLKPETQVGMHAHHNLSL-GVANSIVAVEEGCDRVDASLAGMGAGAGNA 237 (345)
T ss_dssp --------HHH----------HHHHHHHHHHHSCTTSEEEEECBCTTSC-HHHHHHHHHHTTCCEEEEBGGGCSSTTCBC
T ss_pred --------HHH----------HHHHHHHHHHhcCCCceEEEEECCCccH-HHHHHHHHHHcCCCEEEecchhccCCccCc
Confidence 111 134566666655 6777520 13366 36778888999988765331 111 13454
Q ss_pred HHHHHHHHHHHhc-----cCChhhhhhhhhhcccc
Q 021609 262 VKRAQAIVRAVTH-----YSDPEVLAEVSCGLGEA 291 (310)
Q Consensus 262 ~~~a~~l~~~i~~-----~~~~~~~~~~~~~~~~~ 291 (310)
. .+.++..++. ..+-..+.++++.+...
T Consensus 238 ~--le~lv~~L~~~g~~~~idl~~l~~~~~~~~~~ 270 (345)
T 1nvm_A 238 P--LEVFIAVAERLGWNHGTDLYTLMDAADDIVRP 270 (345)
T ss_dssp B--HHHHHHHHHHHTCBCCSCHHHHHHHHHHTTGG
T ss_pred C--HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 3 2334433332 34556677777766655
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.15 Score=45.56 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHH------hhcCcceeeccccCcHHHHHHHHHcCCCEE-
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIK------QSVTIPVMAKARIGHFVEAQILEAIGIDYV- 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~------~~~~iPv~vk~~~~~~~~a~~~~~aGad~V- 118 (310)
+.|+.+.+.||+.| ++....+.. |+......++++++. +..++|+.+..+ ..+.++.+.++||+.|
T Consensus 34 ~~a~~m~~~GAdiI-DIGgeSTRP----ga~~vs~eeE~~Rv~pvi~~l~~~~v~iSIDT~--~~~Va~~al~aGa~iIN 106 (270)
T 4hb7_A 34 NRVKAMIDEGADII-DVGGVSTRP----GHEMVTLEEELNRVLPVVEAIVGFDVKISVDTF--RSEVAEACLKLGVDMIN 106 (270)
T ss_dssp HHHHHHHHTTCSEE-EEESCCCST----TCCCCCHHHHHHHHHHHHHHHTTSSSEEEEECS--CHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHCCCCEE-EECCccCCC----CCCCCchHHHHHHHHHHHHHhhcCCCeEEEECC--CHHHHHHHHHhccceec
Confidence 56889999999965 774222211 121222234444431 135788888766 3477899999999998
Q ss_pred EeCCCCCchhHHHHHHhc
Q 021609 119 DESEVLTPADEENHINKH 136 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~ 136 (310)
.++.....++..+.+.++
T Consensus 107 DVs~g~~d~~m~~~va~~ 124 (270)
T 4hb7_A 107 DQWAGLYDHRMFQIVAKY 124 (270)
T ss_dssp ETTTTSSCTHHHHHHHHT
T ss_pred cccccccchhHHHHHHHc
Confidence 344444344555555443
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.086 Score=49.26 Aligned_cols=137 Identities=13% Similarity=0.156 Sum_probs=75.1
Q ss_pred hcCcceeecccc-C-------cHHHHHHHHHcCCCEEEeCC--CCCchhHHHH-HHhcCCCCcEEEecC---CHHHHHHH
Q 021609 90 SVTIPVMAKARI-G-------HFVEAQILEAIGIDYVDESE--VLTPADEENH-INKHNFRIPFVCGCR---NLGEALRR 155 (310)
Q Consensus 90 ~~~iPv~vk~~~-~-------~~~~a~~~~~aGad~Vi~~~--~~~~~~~~~~-i~~~~~~i~~~v~~~---t~~ea~~~ 155 (310)
....|+.+.--. + ....++.+.++|+-..+++. .++.++.... +.+..++.+.++.+. +.+++.++
T Consensus 84 ~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~le~~~~~~~~v~r~~P~~~~ianig~~~~~e~~~~~ 163 (365)
T 3sr7_A 84 DFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQA 163 (365)
T ss_dssp EESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC-----------------------CCEEEEEETTSCHHHHHHH
T ss_pred EccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeecccccccccCccccceEehhhCCCCcEEEEeCCCCCHHHHHHH
Confidence 457888874211 1 13467889999999887333 2222222111 222225555555543 66777777
Q ss_pred H-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCC--
Q 021609 156 I-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGV-- 232 (310)
Q Consensus 156 ~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI-- 232 (310)
. ..|+|.+.+|....+. .. -+.-+ .+.....+.++++++..++||++ .++
T Consensus 164 ve~~~adal~ihln~~qe-------~~---------~p~Gd--------~~~~~~~~~I~~l~~~~~~PViv---K~vg~ 216 (365)
T 3sr7_A 164 VRDLQPLFLQVHINLMQE-------LL---------MPEGE--------REFRSWKKHLSDYAKKLQLPFIL---KEVGF 216 (365)
T ss_dssp HHHHCCSCEEEEECHHHH-------HT---------SSSSC--------CCCHHHHHHHHHHHHHCCSCEEE---EECSS
T ss_pred HHhcCCCEEEEecccccc-------cc---------CCCCC--------CcHHHHHHHHHHHHHhhCCCEEE---EECCC
Confidence 6 6799998887431100 00 00000 00001136788888888999985 345
Q ss_pred -CCHHHHHHHHHcCCCEEEEcc
Q 021609 233 -ATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 233 -~t~~d~~~~l~~GadgV~VGs 253 (310)
.+++++..+.++|+|+|.|+.
T Consensus 217 g~s~e~A~~l~~aGad~I~V~g 238 (365)
T 3sr7_A 217 GMDVKTIQTAIDLGVKTVDISG 238 (365)
T ss_dssp CCCHHHHHHHHHHTCCEEECCC
T ss_pred CCCHHHHHHHHHcCCCEEEEeC
Confidence 589999999999999999954
|
| >1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.14 Score=45.36 Aligned_cols=38 Identities=24% Similarity=0.412 Sum_probs=30.9
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEccccccCCCH
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~a~dp 261 (310)
+++|+ -.|+| +++|+.+++.. +.||++||++-++++++
T Consensus 206 ~vrIl--YGGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~~F 244 (256)
T 1aw2_A 206 NVVIQ--YGGSV-KPENAAAYFAQPDIDGALVGGAALDAKSF 244 (256)
T ss_dssp HCEEE--ECSCC-CTTTHHHHTTSTTCCEEEESGGGGCHHHH
T ss_pred cccEE--EcCCC-CHHHHHHHHcCCCCCeeeecHHHhChHHH
Confidence 47888 46888 57999999965 99999999999974443
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.16 Score=46.44 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=50.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHH-------HHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQ-------LIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~-------~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
+.|+.+.+.||+.| |++...+.. | ......+ .++.+++.+ ++|+++..+ ..+.++.+.++|++.
T Consensus 69 ~~A~~~v~~GAdII-DIGgeSTrP----G-~~v~~~eEl~Rv~pvI~~l~~~~~~vpISIDT~--~~~VaeaAl~aGa~i 140 (318)
T 2vp8_A 69 DAVHRAVADGADVI-DVGGVKAGP----G-ERVDVDTEITRLVPFIEWLRGAYPDQLISVDTW--RAQVAKAACAAGADL 140 (318)
T ss_dssp HHHHHHHHTTCSEE-EEC---------------CHHHHHHHHHHHHHHHHHHSTTCEEEEECS--CHHHHHHHHHHTCCE
T ss_pred HHHHHHHHCCCCEE-EECCCcCCC----C-CCCCHHHHHHHHHHHHHHHHhhCCCCeEEEeCC--CHHHHHHHHHhCCCE
Confidence 46888999999965 886221111 1 0111123 345556666 899988665 347788999999998
Q ss_pred EE-eCCCCCchhHHHHHHhcCCCC
Q 021609 118 VD-ESEVLTPADEENHINKHNFRI 140 (310)
Q Consensus 118 Vi-~~~~~~~~~~~~~i~~~~~~i 140 (310)
|- .+. ....++.+.+++++..+
T Consensus 141 INDVsg-~~d~~m~~vaa~~g~~v 163 (318)
T 2vp8_A 141 INDTWG-GVDPAMPEVAAEFGAGL 163 (318)
T ss_dssp EEETTS-SSSTTHHHHHHHHTCEE
T ss_pred EEECCC-CCchHHHHHHHHhCCCE
Confidence 84 332 23445666665554333
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.057 Score=47.51 Aligned_cols=80 Identities=16% Similarity=0.152 Sum_probs=57.3
Q ss_pred hhhCcccccCCCHHHHHHHHHcCC-c--EEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHH
Q 021609 33 MLRGGVIMDVVTPEQARVAEEAGA-C--AVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQ 108 (310)
Q Consensus 33 ~~~~g~i~~~~~~~~A~~~~~~Ga-~--~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~ 108 (310)
++-.+.+. ++++.++++.+.|. . .++.|+. .|. ..+.+.++++++.+ ++|+.+...+...++++
T Consensus 131 rl~~~d~~--~~~~~~~~~a~~g~~~~~~~VYl~s--------~G~--~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a~ 198 (240)
T 1viz_A 131 ALTEADAD--LNMDDIVAYARVSELLQLPIFYLEY--------SGV--LGDIEAVKKTKAVLETSTLFYGGGIKDAETAK 198 (240)
T ss_dssp HHTTBCCC--CCHHHHHHHHHHHHHTTCSEEEEEC--------TTS--CCCHHHHHHHHHTCSSSEEEEESSCCSHHHHH
T ss_pred EeeccCCC--CCHHHHHHHHHhCcccCCCEEEEeC--------CCc--cChHHHHHHHHHhcCCCCEEEEeccCCHHHHH
Confidence 44444433 56788888888773 2 3456631 122 34689999999999 99999999888888999
Q ss_pred HHHHcCCCEEE-eCCCCC
Q 021609 109 ILEAIGIDYVD-ESEVLT 125 (310)
Q Consensus 109 ~~~~aGad~Vi-~~~~~~ 125 (310)
.+.+ |||+|+ ++....
T Consensus 199 ~~~~-gAd~VIVGSa~v~ 215 (240)
T 1viz_A 199 QYAE-HADVIVVGNAVYE 215 (240)
T ss_dssp HHHT-TCSEEEECTHHHH
T ss_pred HHHh-CCCEEEEChHHHh
Confidence 9888 999996 554433
|
| >3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.53 Score=41.68 Aligned_cols=179 Identities=13% Similarity=0.145 Sum_probs=101.2
Q ss_pred cccccC-CCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 37 GVIMDV-VTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 37 g~i~~~-~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
|.+... .+++.++.+...|+|++ +||+..+..... ....+..+. ..+.++++........+++.+.+.|
T Consensus 18 g~~~~~~~~p~~~e~a~~~g~D~vilDlEhav~~~~k--------~~~~l~a~~-~~~~~~~VRVn~~~~~di~~~ld~G 88 (261)
T 3qz6_A 18 GTMLNLVYNPDIVRIYAEAGLDYFIVDCEHAAYTFRE--------INHLVSVAK-NAGVSVLVRIPQVDRAHVQRLLDIG 88 (261)
T ss_dssp EEEESSCCCTTHHHHHHHTTCSEEEEESSSSCCCHHH--------HHHHHHHHH-HHTCEEEEECSSCCHHHHHHHHHHT
T ss_pred EEEEecCCCHHHHHHHhcCCcCEEEEeccCCCCCHHH--------HHHHHHHHh-hcCCeEEEEeCCCCHHHHHHHHhcC
Confidence 566677 88999999999999998 678622211110 012233222 3466677655433345788888999
Q ss_pred CCEEEeCCCCCchhHHHHHHh-cC-----------------------------CCCcEEEecCCHHHHHHHHH----hCC
Q 021609 115 IDYVDESEVLTPADEENHINK-HN-----------------------------FRIPFVCGCRNLGEALRRIR----EGA 160 (310)
Q Consensus 115 ad~Vi~~~~~~~~~~~~~i~~-~~-----------------------------~~i~~~v~~~t~~ea~~~~~----~Ga 160 (310)
+++|+.+...+..++....+. .+ ..+.+++-+.|.+-+..+.+ .|+
T Consensus 89 ~~gI~lP~v~saed~~~~~~~~~~~p~G~Rg~~~~r~~~~g~~~~~~y~~~~~~~~~v~~mIEt~~av~~~~eIaa~~~v 168 (261)
T 3qz6_A 89 AEGFMIPGVQSAETMRETVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQERNDEIFIMAQIEHVKAVEDIDSILAVQGV 168 (261)
T ss_dssp CCEEEETTCCSHHHHHHHHHHHSCTTTCCCCCCCGGGGTTCCCCHHHHHHHHHTTCEEEEEECCHHHHHTHHHHHTSTTC
T ss_pred CCEEEECCcCCHHHHHHHHHHhccCCCCCcCcccchhhhccccchhhHHhcCCCCeEEEEEECCHHHHHHHHHHhCCCCC
Confidence 999988877666666544433 11 12556666777755444332 367
Q ss_pred CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc--HHHHHHH---hhcCCCCEEEeCCCCCCCH
Q 021609 161 AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP--YDLVMQT---KQLGRLPVVHFAAGGVATP 235 (310)
Q Consensus 161 d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~--~~~i~~i---~~~~~iPVi~iA~GGI~t~ 235 (310)
|.+.+.. .++. .++ .. +. +...+ ...++++ ++...+|+-+. ++ ++
T Consensus 169 d~l~iG~----~DL~------~~l----g~-~~-----------~~~~p~v~~a~~~iv~aa~aaG~~~g~~--~~--~~ 218 (261)
T 3qz6_A 169 DAVIFGP----RDLS------NDL----GI-IG-----------QTEHPKVYECYEKVYRAADRQGVVKGFF--TA--AD 218 (261)
T ss_dssp CEEEECH----HHHH------HHT----TC-TT-----------CTTCHHHHHHHHHHHHHHHHHTCEEEEE--ES--SC
T ss_pred CEEEECH----HHHH------HHh----CC-CC-----------CCCCHHHHHHHHHHHHHHHHhCCCEEEE--eC--CH
Confidence 8777632 1211 110 00 00 00001 1222222 12235676532 33 68
Q ss_pred HHH-HHHHHcCCCEEEEccc
Q 021609 236 ADA-AMMMQLGCDGVFVGSG 254 (310)
Q Consensus 236 ~d~-~~~l~~GadgV~VGsa 254 (310)
+.+ ..++..|++.+.+|+-
T Consensus 219 ~~~~~~~~~~G~~~~s~~~D 238 (261)
T 3qz6_A 219 AAKMGWAVERGAQMLLWSGD 238 (261)
T ss_dssp GGGGHHHHHTTCCEEEEEEH
T ss_pred HHHHHHHHHCCCCEEEEhhH
Confidence 888 8888999999999963
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.27 Score=48.38 Aligned_cols=87 Identities=24% Similarity=0.212 Sum_probs=61.4
Q ss_pred CHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHH-cCCCEEEeCC
Q 021609 44 TPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEA-IGIDYVDESE 122 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~-aGad~Vi~~~ 122 (310)
..+.++.+++.|++.|+.-+ +.. .|.....+.+.++++++.+++||++...+...++++.+.+ .|+++++...
T Consensus 454 ~~e~a~~~~~~Ga~~il~t~-----~~~-dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~ 527 (555)
T 1jvn_A 454 VWELTRACEALGAGEILLNC-----IDK-DGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAG 527 (555)
T ss_dssp HHHHHHHHHHTTCCEEEECC-----GGG-TTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESH
T ss_pred HHHHHHHHHHcCCCEEEEeC-----CCC-CCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHH
Confidence 35899999999999984321 111 1222234689999999999999999888877788888877 8999996332
Q ss_pred -----CCCchhHHHHHHhc
Q 021609 123 -----VLTPADEENHINKH 136 (310)
Q Consensus 123 -----~~~~~~~~~~i~~~ 136 (310)
.....++.+.++..
T Consensus 528 a~~~~~~~~~e~~~~l~~~ 546 (555)
T 1jvn_A 528 MFHRGEFTVNDVKEYLLEH 546 (555)
T ss_dssp HHHTTSCCHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHC
Confidence 23455555555443
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.53 E-value=1.4 Score=38.95 Aligned_cols=182 Identities=13% Similarity=0.124 Sum_probs=99.7
Q ss_pred ccCCCH----HHHHHHHHcCCcEE-Eec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHc
Q 021609 40 MDVVTP----EQARVAEEAGACAV-MAL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAI 113 (310)
Q Consensus 40 ~~~~~~----~~A~~~~~~Ga~~i-~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~a 113 (310)
..+.+. ++|+++.++|++.+ .+. .|...... +.|.. ...++.++++++..++|+..-.. +...++.+.+.
T Consensus 31 c~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~-~~g~~-~egl~~l~~~~~~~Gl~~~te~~--d~~~~~~l~~~ 106 (262)
T 1zco_A 31 CSIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYS-FQGYG-EKALRWMREAADEYGLVTVTEVM--DTRHVELVAKY 106 (262)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTS-CCCCT-HHHHHHHHHHHHHHTCEEEEECC--CGGGHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCccc-ccCcc-HHHHHHHHHHHHHcCCcEEEeeC--CHHhHHHHHhh
Confidence 345555 46778889999977 222 12111101 11110 11234566667778999987544 22446677777
Q ss_pred CCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEe--cC-CHHHHHHHHH----hCC-CEEEEcCCCCCcchHHHHHHHHhh
Q 021609 114 GIDYV-DESEVLTPADEENHINKHNFRIPFVCG--CR-NLGEALRRIR----EGA-AMIRTKGEAGTGNIIEAVRHVRSV 184 (310)
Q Consensus 114 Gad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~--~~-t~~ea~~~~~----~Ga-d~V~v~g~~~~~~~~~~~~~~r~~ 184 (310)
+|.+ +.+..+...++.+.+.+ .+.+++++ .. |.+++..+++ .|. +++.++ ++++..
T Consensus 107 -vd~~kIga~~~~n~~ll~~~a~--~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~-RG~~~~----------- 171 (262)
T 1zco_A 107 -SDILQIGARNSQNFELLKEVGK--VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCE-RGIRTF----------- 171 (262)
T ss_dssp -CSEEEECGGGTTCHHHHHHHTT--SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEE-CCBCCS-----------
T ss_pred -CCEEEECcccccCHHHHHHHHh--cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEE-CCCCCC-----------
Confidence 8998 56666666666666543 56777775 33 7888877764 365 444444 211000
Q ss_pred ccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCC--CCCCC--HHHHHHHHHcCCCEEEEccccc
Q 021609 185 MGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 185 ~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~--GGI~t--~~d~~~~l~~GadgV~VGsai~ 256 (310)
-.+ . ....++..+..+++..++||+..++ +|.+. +.-...+..+|++|+++=+-+.
T Consensus 172 ------~~y-~---------~~~v~L~ai~~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 231 (262)
T 1zco_A 172 ------ETA-T---------RFTLDISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPE 231 (262)
T ss_dssp ------CCS-S---------SSBCCTTHHHHHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSS
T ss_pred ------CCc-C---------hhhcCHHHHHHHHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Confidence 000 0 0122334555666656789864322 22211 0224446689999999887654
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.51 E-value=0.59 Score=42.59 Aligned_cols=94 Identities=11% Similarity=0.051 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCC-------CCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARM-------SDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~-------~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.+.||+.| |++...+......+.... +....++.+++.+++|+.+..+ ..+.++.+.++|++.|
T Consensus 53 ~~A~~~v~~GAdII-DIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISIDT~--~~~Va~aAl~aGa~iI 129 (314)
T 3tr9_A 53 RTAEKMVDEGADIL-DIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVDTS--RPRVMREAVNTGADMI 129 (314)
T ss_dssp HHHHHHHHTTCSEE-EEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEECS--CHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHCCCCEE-EECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEeCC--CHHHHHHHHHcCCCEE
Confidence 56888999999965 775222111100000000 0122445556667899998775 3477889999999998
Q ss_pred EeCCCCCchhHHHHHHhcCCCCcE
Q 021609 119 DESEVLTPADEENHINKHNFRIPF 142 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~i~~ 142 (310)
--.......+..+.+.+++..+.+
T Consensus 130 NDVsg~~~~~m~~v~a~~g~~vVl 153 (314)
T 3tr9_A 130 NDQRALQLDDALTTVSALKTPVCL 153 (314)
T ss_dssp EETTTTCSTTHHHHHHHHTCCEEE
T ss_pred EECCCCCchHHHHHHHHhCCeEEE
Confidence 422222234566666555443333
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.17 Score=44.83 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=51.8
Q ss_pred EecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCC
Q 021609 144 CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLP 223 (310)
Q Consensus 144 v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iP 223 (310)
+.+.+.+++..+.+.|+|-|-+-..-.. -+.+|++.+++.+++..++|
T Consensus 6 vc~~s~~~a~~A~~~GAdRIELc~~L~~--------------------------------GGlTPS~g~i~~~~~~~~ip 53 (256)
T 1twd_A 6 ICCYSMECALTAQQNGADRVELCAAPKE--------------------------------GGLTPSLGVLKSVRQRVTIP 53 (256)
T ss_dssp EEESSHHHHHHHHHTTCSEEEECBCGGG--------------------------------TCBCCCHHHHHHHHHHCCSC
T ss_pred EEeCCHHHHHHHHHcCCCEEEEcCCccc--------------------------------CCCCCCHHHHHHHHHHcCCc
Confidence 4567899999999999998876532110 02355677777777777888
Q ss_pred EEEe--C-CCCC-CCH-------HHHHHHHHcCCCEEEEc
Q 021609 224 VVHF--A-AGGV-ATP-------ADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 224 Vi~i--A-~GGI-~t~-------~d~~~~l~~GadgV~VG 252 (310)
|.++ . .|+. .|. +|+..+.++|+|||++|
T Consensus 54 v~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G 93 (256)
T 1twd_A 54 VHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTG 93 (256)
T ss_dssp EEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred eEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 8764 2 2333 232 35666777888888888
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.25 Score=44.67 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCC-------CHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMS-------DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~-------~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.+.||+.| +++...+.. |..... ....++.+++. ++|+++..+ ..+.++.+.++|++.|
T Consensus 56 ~~a~~~v~~GAdII-DIGgeSTrP----ga~~v~~~eE~~Rv~pvI~~l~~~-~vpiSIDT~--~~~Va~aAl~aGa~iI 127 (294)
T 2dqw_A 56 ERAREMVAEGADIL-DLGAESTRP----GAAPVPVEEEKRRLLPVLEAVLSL-GVPVSVDTR--KPEVAEEALKLGAHLL 127 (294)
T ss_dssp HHHHHHHHHTCSEE-EEECC---------------CCHHHHHHHHHHHHHTT-CSCEEEECS--CHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHCCCCEE-EECCCcCCC----CCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEECC--CHHHHHHHHHhCCCEE
Confidence 67999999999965 776222111 100011 12244444544 899988665 3477889999999988
Q ss_pred E-eCCCCCchhHHHHHHhcCC
Q 021609 119 D-ESEVLTPADEENHINKHNF 138 (310)
Q Consensus 119 i-~~~~~~~~~~~~~i~~~~~ 138 (310)
- .+.. ..++..+.+++++.
T Consensus 128 NdVsg~-~d~~m~~v~a~~~~ 147 (294)
T 2dqw_A 128 NDVTGL-RDERMVALAARHGV 147 (294)
T ss_dssp ECSSCS-CCHHHHHHHHHHTC
T ss_pred EECCCC-CChHHHHHHHHhCC
Confidence 4 3333 44555565555433
|
| >1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 | Back alignment and structure |
|---|
Probab=94.45 E-value=1.3 Score=40.74 Aligned_cols=88 Identities=13% Similarity=0.024 Sum_probs=55.9
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC---cceeeccccCcHHHHHHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT---IPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~---iPv~vk~~~~~~~~a~~~~~ 112 (310)
|.+..+.+++.++.+...|+|++ ++++..+..... ....+..+. ..+ .|+++...-....+++.+.+
T Consensus 45 g~~l~i~~p~~~e~a~~~GaD~vilDlEha~~~~e~--------~~~~l~a~~-~~~~~~~~~~VRv~~~~~~di~~~Ld 115 (339)
T 1izc_A 45 GVAHGIPSTFVTKVLAATKPDFVWIDVEHGMFNRLE--------LHDAIHAAQ-HHSEGRSLVIVRVPKHDEVSLSTALD 115 (339)
T ss_dssp EEEECSCCHHHHHHHHHTCCSEEEEETTTSCCCHHH--------HHHHHHHHH-HHTTTCSEEEEECCTTCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHhCCCCEEEEECCCCCCcHHH--------HHHHHHHhh-hcCCCCCeEEEEeCCCCHHHHHHHHh
Confidence 45677789999999999999987 677532221110 022333332 223 67777654333467788889
Q ss_pred cCCCEEEeCCCCCchhHHHHH
Q 021609 113 IGIDYVDESEVLTPADEENHI 133 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i 133 (310)
+|+++|+.+...+..++....
T Consensus 116 aGa~gImlP~V~saee~~~~~ 136 (339)
T 1izc_A 116 AGAAGIVIPHVETVEEVREFV 136 (339)
T ss_dssp HTCSEEEETTCCCHHHHHHHH
T ss_pred CCCCEEEeCCCCCHHHHHHHH
Confidence 999999877766666665443
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=94.40 E-value=2.7 Score=37.70 Aligned_cols=194 Identities=13% Similarity=0.089 Sum_probs=114.2
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+..-|+++.+. ..+ +.|. ......++.+.+.+++||.+..--+ .++.++.+.++|.
T Consensus 24 Nv~n~e~~~avl~AAe~~~sPvIlq~s~~--~~~-y~g~--~~~~~~v~~~a~~~~VPValHlDHg~~~e~i~~ai~~GF 98 (286)
T 1gvf_A 24 NIHNAETIQAILEVCSEMRSPVILAGTPG--TFK-HIAL--EEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGV 98 (286)
T ss_dssp ECCSHHHHHHHHHHHHHHTCCCEEEECTT--HHH-HSCH--HHHHHHHHHHHHHTTSCBEEEEEEECCHHHHHHHHHTTC
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECChh--HHh-hcCH--HHHHHHHHHHHHhCCCcEEEEcCCCCCHHHHHHHHHcCC
Confidence 4555554 445567777766666311 111 1111 0112455556667899999864322 5688899999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCC------C----CcEEE-------ecCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNF------R----IPFVC-------GCRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~------~----i~~~v-------~~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- .+. ++.+ ++.++..+.+. | ..-.+ -.++++++.+.. +.|+|.+.+.-.
T Consensus 99 tSVMiDgS~-lp~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiG 177 (286)
T 1gvf_A 99 RSAMIDGSH-FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIG 177 (286)
T ss_dssp CEEEECCTT-SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSS
T ss_pred CeEEECCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcccCcccccccccCCCHHHHHHHHHHHCCCEEEeecC
Confidence 9983 332 2322 33344333321 1 01011 025778888865 579998876421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
.--| .++ ....-+++.++++++..++|++.=.+.|+ ..+++.++++.|..=
T Consensus 178 t~HG-----------------~Y~-----------~~p~Ld~~~L~~I~~~~~vpLVlHGgSG~-~~e~i~~ai~~Gv~K 228 (286)
T 1gvf_A 178 TAHG-----------------LYS-----------KTPKIDFQRLAEIREVVDVPLVLHGASDV-PDEFVRRTIELGVTK 228 (286)
T ss_dssp CCSS-----------------CCS-----------SCCCCCHHHHHHHHHHCCSCEEECCCTTC-CHHHHHHHHHTTEEE
T ss_pred cccc-----------------CcC-----------CCCccCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHHCCCeE
Confidence 1101 111 01234588999999988999986456677 578899999999999
Q ss_pred EEEccccccCCCHHHHHHHHHHHHhc
Q 021609 249 VFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 249 V~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
|=+++.+-. ...+.+++.+.+
T Consensus 229 iNi~Tdl~~-----a~~~~~r~~~~~ 249 (286)
T 1gvf_A 229 VNVATELKI-----AFAGAVKAWFAE 249 (286)
T ss_dssp EEECHHHHH-----HHHHHHHHHHHH
T ss_pred EEEChHHHH-----HHHHHHHHHHHh
Confidence 999988763 344445554443
|
| >3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=1.2 Score=38.61 Aligned_cols=176 Identities=17% Similarity=0.190 Sum_probs=106.0
Q ss_pred cccCCCHHHHHHHHHcCC-cEEEeccCCccccccc--CCCCCCCCHHHHHHHHhhcCcceeeccccC----cHHHHHHHH
Q 021609 39 IMDVVTPEQARVAEEAGA-CAVMALERVPADIRSQ--GGVARMSDPQLIKEIKQSVTIPVMAKARIG----HFVEAQILE 111 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga-~~i~~L~~~~~~~~~~--~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~----~~~~a~~~~ 111 (310)
+.|-.+.+..+.+.+.|. +++ --||. .+... .|. ...+.++++++.++-||.+...-. ...+++.+.
T Consensus 4 flDtAn~~ei~~~~~~g~i~GV-TTNPs--li~k~~~~g~---~~~~~~~ei~~~v~G~Vs~EV~a~d~e~mi~eA~~L~ 77 (223)
T 3s1x_A 4 FLDTANIDEIRTGVNWGIVDGV-TTNPT--LISKEAVNGK---KYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIH 77 (223)
T ss_dssp EEECCCHHHHHHHHHHTCCCEE-ECCHH--HHHHHSCTTC---CHHHHHHHHHHHCSSCEEEECCCCSHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHhcCCcccc-cCCHH--HHHhhhccCC---CHHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHH
Confidence 456667888888888885 665 44532 12221 021 124788888888777877754322 246677888
Q ss_pred HcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceE
Q 021609 112 AIGIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIR 189 (310)
Q Consensus 112 ~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~ 189 (310)
+.+-+.++ ++...+--...+.+.+. |+.+.+ -+.+...+..++++|++||...- |.+
T Consensus 78 ~~~~nv~IKIP~T~eGl~A~~~L~~~--GI~vn~TlifS~~QA~~Aa~AGa~yISPfv----gRi--------------- 136 (223)
T 3s1x_A 78 GLGDNAVVKIPMTEDGLRAIKTLSSE--HINTNCTLVFNPIQALLAAKAGVTYVSPFV----GRL--------------- 136 (223)
T ss_dssp HTCTTEEEEEESSHHHHHHHHHHHHT--TCCEEEEEECSHHHHHHHHHTTCSEEEEBS----HHH---------------
T ss_pred HhCCCEEEEeCCCHHHHHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHcCCeEEEeec----chH---------------
Confidence 88766665 44332222333444443 544433 47899999999999999998642 110
Q ss_pred eecccChhHHHHhhhccCCcHHHHHHHh----hc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 190 VLRNMDDDEVFTFAKKIAAPYDLVMQTK----QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~~i~~i~----~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
...+ .++.+.++++. .. .+..|+ ...++++.++.++..+|||.+-+.-.+++
T Consensus 137 --~d~g-----------~dG~~~v~~i~~~~~~~~~~T~Il---aAS~Rn~~~v~~aa~~G~d~~Tip~~vl~ 193 (223)
T 3s1x_A 137 --DDIG-----------EDGMQIIDMIRTIFNNYIIKTQIL---VASIRNPIHVLRSAVIGADVVTVPFNVLK 193 (223)
T ss_dssp --HHTT-----------SCTHHHHHHHHHHHHHTTCCSEEE---EBSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred --hhcC-----------CCHHHHHHHHHHHHHHcCCCCEEE---EEeCCCHHHHHHHHHcCCCEEEeCHHHHH
Confidence 0001 12233333332 21 244454 36789999999999999999998866654
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.16 Score=45.37 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc-C-------Chhhh
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY-S-------DPEVL 281 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~-~-------~~~~~ 281 (310)
++.++.+++.+++||++ -+.|-++.++.++..+|||+|+++.+.+. +. ..+++.+..+++ + .++.+
T Consensus 102 ~~~l~~ir~~v~lPvl~--kdfiid~~qv~~A~~~GAD~VlLi~a~l~---~~-~l~~l~~~a~~lGl~~lvev~t~ee~ 175 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLR--KDFVVQPYQIHEARAHGADMLLLIVAALE---QS-VLVSMLDRTESLGMTALVEVHTEQEA 175 (272)
T ss_dssp HHHHHHHHHHCSSCEEE--ESCCCSHHHHHHHHHTTCSEEEEEGGGSC---HH-HHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred HHHHHHHHHhCCCCEEE--CccccCHHHHHHHHHcCCCEEEEecccCC---HH-HHHHHHHHHHHCCCcEEEEcCCHHHH
Confidence 45677777778999995 35556899999999999999999988884 32 344455554432 1 23333
Q ss_pred hhhhhhcccchhcccCcc
Q 021609 282 AEVSCGLGEAMVGLNLSD 299 (310)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~ 299 (310)
.. ....|-.+.|.|-++
T Consensus 176 ~~-A~~~Gad~IGv~~r~ 192 (272)
T 3qja_A 176 DR-ALKAGAKVIGVNARD 192 (272)
T ss_dssp HH-HHHHTCSEEEEESBC
T ss_pred HH-HHHCCCCEEEECCCc
Confidence 22 234688888877544
|
| >1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.25 Score=43.74 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=31.1
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCH
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp 261 (310)
+++|+ -.|+| +++|+.+++. .+.||++||++-++++++
T Consensus 204 ~vrIl--YGGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~~F 242 (255)
T 1tre_A 204 QVIIQ--YGGSV-NASNAAELFAQPDIDGALVGGASLKADAF 242 (255)
T ss_dssp HCEEE--ECSCC-CTTTHHHHHTSTTCCEEEESGGGGCHHHH
T ss_pred cccEE--EcCCC-CHHHHHHHHcCCCCCeeEecHHHhChHHH
Confidence 47888 46888 6889999996 899999999999975443
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=94.26 E-value=0.12 Score=46.88 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHH-------HHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQ-------LIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~-------~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.+.||+.| +++...+... .......+ .++.+++.+++|+++... ..+.++.+.++|++.|
T Consensus 67 ~~a~~~v~~GAdiI-DIGgeStrPg----a~~v~~~eE~~RvvpvI~~l~~~~~vpiSIDT~--~~~V~~aAl~aGa~iI 139 (297)
T 1tx2_A 67 RHAKEMRDEGAHII-DIGGESTRPG----FAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTY--KAEVAKQAIEAGAHII 139 (297)
T ss_dssp HHHHHHHHTTCSEE-EEESCC--------CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECS--CHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHcCCCEE-EECCCcCCCC----CCCCCHHHHHHHHHHHHHHHHhcCCceEEEeCC--CHHHHHHHHHcCCCEE
Confidence 46888899999965 7762222111 10111122 334455667999998765 3467888888999999
Q ss_pred E-eCCCCCchhHHHHHHhcCCC
Q 021609 119 D-ESEVLTPADEENHINKHNFR 139 (310)
Q Consensus 119 i-~~~~~~~~~~~~~i~~~~~~ 139 (310)
- .+.....+++.+.+++++..
T Consensus 140 Ndvsg~~~d~~m~~~aa~~g~~ 161 (297)
T 1tx2_A 140 NDIWGAKAEPKIAEVAAHYDVP 161 (297)
T ss_dssp EETTTTSSCTHHHHHHHHHTCC
T ss_pred EECCCCCCCHHHHHHHHHhCCc
Confidence 4 33322244555666555433
|
| >2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.26 E-value=0.19 Score=43.94 Aligned_cols=37 Identities=22% Similarity=0.490 Sum_probs=29.8
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCC
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~d 260 (310)
+++|+ -+|+| +++++.+++ ..+.||++||++-+++++
T Consensus 188 ~vrIl--YGGSV-~~~N~~~l~~~~diDG~LVGgAsl~a~~ 225 (233)
T 2jgq_A 188 KTPLL--YGGSV-NTQNAKEILGIDSVDGLLIGSASWELEN 225 (233)
T ss_dssp TSCEE--EESSC-CTTTHHHHHTSTTCCEEEESGGGGSHHH
T ss_pred CCcEE--EcCCc-ChhhHHHHhcCCCCCeeEecHHHhChHH
Confidence 58898 36888 578888877 679999999999997443
|
| >3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.17 E-value=1.4 Score=37.82 Aligned_cols=175 Identities=18% Similarity=0.138 Sum_probs=105.7
Q ss_pred cccCCCHHHHHHHHHcCC-cEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC----cHHHHHHHHHc
Q 021609 39 IMDVVTPEQARVAEEAGA-CAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG----HFVEAQILEAI 113 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga-~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~----~~~~a~~~~~a 113 (310)
+.|-.+.+..+.+.+.|. +++ --||. .+...+|. ...+.++++++.++-||.+...-. ...+++.+.+.
T Consensus 4 flDtAn~~ei~~~~~~g~i~GV-TTNPs--li~k~~g~---~~~~~~~eI~~~v~G~Vs~EV~a~d~e~mi~ea~~l~~~ 77 (212)
T 3r8r_A 4 FVDTANIDEIREANELGILAGV-TTNPS--LVAKEANV---SFHDRLREITDVVKGSVSAEVISLKAEEMIEEGKELAKI 77 (212)
T ss_dssp EEECCCHHHHHHHHHTTCEEEE-ECCHH--HHHTSCSS---CHHHHHHHHHHHCCSCEEEECCCSSHHHHHHHHHHHHTT
T ss_pred EEecCCHHHHHHHHhcCCcccc-cCCHH--HHHHccCC---CHHHHHHHHHHhcCCCEEEEEecCCHHHHHHHHHHHHHh
Confidence 456677888888988885 554 44432 23322122 224788888888777887654221 24667777778
Q ss_pred CCCEEE-eCCCCCchhHHHHHHhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccceEe
Q 021609 114 GIDYVD-ESEVLTPADEENHINKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 114 Gad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
+-+.++ ++...+--...+.+.+. |+.+-+ -+.+...+..++++|++||... |+.
T Consensus 78 ~~nv~IKIP~T~eGl~A~~~L~~~--GI~vn~TlifS~~Qa~~Aa~AGa~yISPfvgRi--------------------- 134 (212)
T 3r8r_A 78 APNITVKIPMTSDGLKAVRALTDL--GIKTNVTLIFNANQALLAARAGATYVSPFLGRL--------------------- 134 (212)
T ss_dssp CTTEEEEEESSHHHHHHHHHHHHT--TCCEEEEEECSHHHHHHHHHHTCSEEEEBHHHH---------------------
T ss_pred CCCEEEEeCCCHHHHHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHcCCeEEEeccchh---------------------
Confidence 766665 44332222334444443 544433 4789999999999999999864 211
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhh----c-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQ----L-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~----~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
...+ .+..+.++++.+ . .+.-|+ ...++++.++.++..+|||.+-+.-.+++
T Consensus 135 -~d~~-----------~dG~~~v~~i~~~~~~~~~~t~il---aAS~R~~~~v~~~a~~G~d~~Tip~~vl~ 191 (212)
T 3r8r_A 135 -DDIG-----------HNGLDLISEVKQIFDIHGLDTQII---AASIRHPQHVTEAALRGAHIGTMPLKVIH 191 (212)
T ss_dssp -HHTT-----------SCHHHHHHHHHHHHHHHTCCCEEE---EBSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred -hhcC-----------CChHHHHHHHHHHHHHcCCCCEEE---EecCCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence 0001 122333333322 2 244454 36789999999999999999987755543
|
| >1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.19 Score=44.91 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=30.3
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCH
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp 261 (310)
+++|+ -+|+| +++++.+++ ..+.||++||++-++++++
T Consensus 222 ~vrIL--YGGSV-~~~N~~el~~~~diDG~LVGgASLka~~F 260 (275)
T 1mo0_A 222 ATRII--YGGSV-TADNAAELGKKPDIDGFLVGGASLKPDFV 260 (275)
T ss_dssp HSCEE--EESSC-CTTTHHHHTTSTTCCEEEESGGGGSTHHH
T ss_pred cccEE--EcCCC-CHhhHHHHhcCCCCCeeEechHHhChHHH
Confidence 47898 36888 588888877 6799999999999985443
|
| >1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... | Back alignment and structure |
|---|
Probab=93.97 E-value=0.26 Score=43.41 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=30.0
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCC
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~d 260 (310)
+++|+ -.|+| +++++.+++ ..+.||++||++-+++++
T Consensus 203 ~vrIl--YGGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~~ 240 (248)
T 1r2r_A 203 STRII--YGGSV-TGATCKELASQPDVDGFLVGGASLKPEF 240 (248)
T ss_dssp HCCEE--ECSCC-CTTTHHHHHTSTTCCEEEESGGGGSTHH
T ss_pred cccEE--EcCCc-CHhHHHHHHcCCCCCeeEechHHhChHH
Confidence 47898 46888 588888877 679999999999998544
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.12 Score=44.16 Aligned_cols=79 Identities=20% Similarity=0.201 Sum_probs=54.1
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCE
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
+.++.+++.++.+.+.|++.+ .++ +..+.... .+.......+.++++++.+++|+++...+...+++..+.++|||+
T Consensus 123 ~~~~~t~~e~~~~~~~G~d~i-~~~~~g~t~~~~-~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~ 200 (223)
T 1y0e_A 123 MADIATVEEAKNAARLGFDYI-GTTLHGYTSYTQ-GQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHC 200 (223)
T ss_dssp EEECSSHHHHHHHHHTTCSEE-ECTTTTSSTTST-TCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSE
T ss_pred EecCCCHHHHHHHHHcCCCEE-EeCCCcCcCCCC-CCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCE
Confidence 346678888889999999976 432 11111111 110011224678888888899999988886668889999999999
Q ss_pred EE
Q 021609 118 VD 119 (310)
Q Consensus 118 Vi 119 (310)
|.
T Consensus 201 v~ 202 (223)
T 1y0e_A 201 SV 202 (223)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=2 Score=36.08 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCCEEEe-CCCCCchhHHHHH-HhcCCCCcEEE-ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHH
Q 021609 104 FVEAQILEAIGIDYVDE-SEVLTPADEENHI-NKHNFRIPFVC-GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~-~~~~~~~~~~~~i-~~~~~~i~~~v-~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~ 180 (310)
.+.++.+.+.|++.+.. ....+..+..+.+ +..+..+.+.. .+.+.+++..+.++|+|.|.+ +. .
T Consensus 22 ~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~-~~---~-------- 89 (212)
T 2v82_A 22 LAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVT-PN---I-------- 89 (212)
T ss_dssp HHHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEEC-SS---C--------
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEe-CC---C--------
Confidence 35677888899999953 2222222222323 22322333322 245677888888999998852 11 0
Q ss_pred HHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+.++++..++ ...+++ + |+.|++++.++.+.|+|.|.+
T Consensus 90 ----------------------------~~~~~~~~~~-~g~~~~-~---g~~t~~e~~~a~~~G~d~v~v 127 (212)
T 2v82_A 90 ----------------------------HSEVIRRAVG-YGMTVC-P---GCATATEAFTALEAGAQALKI 127 (212)
T ss_dssp ----------------------------CHHHHHHHHH-TTCEEE-C---EECSHHHHHHHHHTTCSEEEE
T ss_pred ----------------------------CHHHHHHHHH-cCCCEE-e---ecCCHHHHHHHHHCCCCEEEE
Confidence 1223333333 345554 2 389999999999999999986
|
| >1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.51 Score=41.56 Aligned_cols=41 Identities=22% Similarity=0.406 Sum_probs=33.5
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~a 265 (310)
+++|+ -+|+| +++|+.+++. .+.||++||++-++ +++....
T Consensus 203 ~vrIl--YGGSV-~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~ii 244 (248)
T 1o5x_A 203 QIRIL--YGGSV-NTENCSSLIQQEDIDGFLVGNASLK-ESFVDII 244 (248)
T ss_dssp HSEEE--ECSCC-CTTTHHHHHTSTTCCEEEECGGGGS-TTHHHHH
T ss_pred cceEE--EcCCC-CHHHHHHHHcCCCCCeeEeeHHHHH-HHHHHHH
Confidence 47888 46888 5889999996 89999999999999 8865443
|
| >1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=93.69 E-value=3.5 Score=36.49 Aligned_cols=94 Identities=9% Similarity=-0.001 Sum_probs=48.3
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCCcccccccC-CCCCCCCH----HHHHHHHhhcCcce-eeccccC-c--H----H
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERVPADIRSQG-GVARMSDP----QLIKEIKQSVTIPV-MAKARIG-H--F----V 105 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~-G~~~~~~~----~~i~~i~~~~~iPv-~vk~~~~-~--~----~ 105 (310)
+...=|+..|+.++++|++.+. .-..-... ..| -+....++ ...+.+++.++.|+ ++...++ + . .
T Consensus 21 ~~tayD~~sA~l~e~aG~d~il-vGdsl~~~-~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~ 98 (264)
T 1m3u_A 21 TITAYDYSFAKLFADEGLNVML-VGDSLGMT-VQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFE 98 (264)
T ss_dssp EEECCSHHHHHHHHHHTCCEEE-ECTTHHHH-TTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHH
T ss_pred EEeCcCHHHHHHHHHcCCCEEE-ECHHHHHH-HcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHH
Confidence 3444577899999999999872 21000000 001 01111112 34556677777654 5444443 2 1 2
Q ss_pred HHHHHHHcCCCEEEeCCCCCchhHHHHHH
Q 021609 106 EAQILEAIGIDYVDESEVLTPADEENHIN 134 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~~~~~~~~~i~ 134 (310)
.+..+.++||++|-.-+..+..+.++.+.
T Consensus 99 ~a~rl~kaGa~aVklEgg~e~~~~I~al~ 127 (264)
T 1m3u_A 99 NAATVMRAGANMVKIEGGEWLVETVQMLT 127 (264)
T ss_dssp HHHHHHHTTCSEEECCCSGGGHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCcHHHHHHHHHHH
Confidence 33467779999995333333334444443
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=93.68 E-value=2.5 Score=37.82 Aligned_cols=96 Identities=11% Similarity=0.088 Sum_probs=49.5
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCCc-cccccc--CCCCCCCCHHHHHHHHhhcCcceeec-cccC-c---HHH----
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERVP-ADIRSQ--GGVARMSDPQLIKEIKQSVTIPVMAK-ARIG-H---FVE---- 106 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~~-~~~~~~--~G~~~~~~~~~i~~i~~~~~iPv~vk-~~~~-~---~~~---- 106 (310)
+...=|+..|+.++++|++.+..=+... ...... ....+.......+.+++.++.|+++- ..++ + .+.
T Consensus 38 ~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~n 117 (281)
T 1oy0_A 38 MLTAYDYSTARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAA 117 (281)
T ss_dssp EEECCSHHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHH
T ss_pred EEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCCCcccCCHHHHHHH
Confidence 4444577899999999999872101000 000000 01112223457778888888776654 3332 2 222
Q ss_pred -HHHHHHcCCCEEEeCCCCCchhHHHHHH
Q 021609 107 -AQILEAIGIDYVDESEVLTPADEENHIN 134 (310)
Q Consensus 107 -a~~~~~aGad~Vi~~~~~~~~~~~~~i~ 134 (310)
.+.+.++||++|-.-+..+..+.++.+.
T Consensus 118 a~rl~~eaGa~aVklEdg~e~~~~I~al~ 146 (281)
T 1oy0_A 118 ATRFLKDGGAHAVKLEGGERVAEQIACLT 146 (281)
T ss_dssp HHHHHHTTCCSEEEEEBSGGGHHHHHHHH
T ss_pred HHHHHHHhCCeEEEECCcHHHHHHHHHHH
Confidence 3445559999994333323334444443
|
| >2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A | Back alignment and structure |
|---|
Probab=93.61 E-value=0.22 Score=43.99 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=30.4
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCC
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~ 259 (310)
+++|++ +|+| +++|+.+++ ..+.||++||++-++++
T Consensus 204 ~vrIlY--GGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~ 240 (252)
T 2btm_A 204 AIRIQY--GGSV-KPDNIRDFLAQQQIDGALVGGASLEPA 240 (252)
T ss_dssp TSEEEE--ESSC-CTTTHHHHHTSTTCCEEEESGGGSSHH
T ss_pred ceeEEE--cCCC-CHHHHHHHHcCCCCCeeEecHHHhChH
Confidence 588883 6888 579999999 68999999999999743
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.54 Score=42.79 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=72.3
Q ss_pred cCcceeec--cccCcHHHHHHHHHcCCCEEEeCCCCC-chhHHHHHHh---c---CCCCcEEEe----cCCH-HHHHHHH
Q 021609 91 VTIPVMAK--ARIGHFVEAQILEAIGIDYVDESEVLT-PADEENHINK---H---NFRIPFVCG----CRNL-GEALRRI 156 (310)
Q Consensus 91 ~~iPv~vk--~~~~~~~~a~~~~~aGad~Vi~~~~~~-~~~~~~~i~~---~---~~~i~~~v~----~~t~-~ea~~~~ 156 (310)
...|++.. ..+...+.+..+.++|.-+++...... +.++.+.+++ . .+++.+++. ..+. +.+..+.
T Consensus 14 ~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~ 93 (328)
T 2gjl_A 14 VEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAII 93 (328)
T ss_dssp CSSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHH
T ss_pred CCCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHH
Confidence 56787763 223356778888889977776443333 5554443332 1 123333433 1233 4455567
Q ss_pred HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHH
Q 021609 157 REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA 236 (310)
Q Consensus 157 ~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~ 236 (310)
+.|+++|.++.. .+.+.++.+++. .+|++ ..+.+++
T Consensus 94 ~~g~d~V~~~~g---------------------------------------~p~~~~~~l~~~-gi~vi----~~v~t~~ 129 (328)
T 2gjl_A 94 EAGIRVVETAGN---------------------------------------DPGEHIAEFRRH-GVKVI----HKCTAVR 129 (328)
T ss_dssp HTTCCEEEEEES---------------------------------------CCHHHHHHHHHT-TCEEE----EEESSHH
T ss_pred hcCCCEEEEcCC---------------------------------------CcHHHHHHHHHc-CCCEE----eeCCCHH
Confidence 889999987642 123445556653 67776 3477899
Q ss_pred HHHHHHHcCCCEEEE
Q 021609 237 DAAMMMQLGCDGVFV 251 (310)
Q Consensus 237 d~~~~l~~GadgV~V 251 (310)
++.++.+.|+|++++
T Consensus 130 ~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 130 HALKAERLGVDAVSI 144 (328)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999988999999998
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=2.9 Score=37.21 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=47.7
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH----HHHHHHHhhcCccee-eccccC-c---H----H
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDP----QLIKEIKQSVTIPVM-AKARIG-H---F----V 105 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~----~~i~~i~~~~~iPv~-vk~~~~-~---~----~ 105 (310)
+...=|+..|+.++++|++.+. .-..-...-...-+....++ ...+.+++.++.|++ +...++ + . .
T Consensus 21 ~~tayDa~sA~l~e~aG~d~il-vGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~ 99 (275)
T 1o66_A 21 MLTAYESSFAALMDDAGVEMLL-VGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFA 99 (275)
T ss_dssp EEECCSHHHHHHHHHTTCCEEE-ECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHH
T ss_pred EEeCcCHHHHHHHHHcCCCEEE-ECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHH
Confidence 4444577899999999999872 11000000000001111122 355566777776644 444432 2 1 2
Q ss_pred HHHHHHHcCCCEEEeCCCCCchhHHHHHH
Q 021609 106 EAQILEAIGIDYVDESEVLTPADEENHIN 134 (310)
Q Consensus 106 ~a~~~~~aGad~Vi~~~~~~~~~~~~~i~ 134 (310)
.+..+.++||++|-.-+..+..+.++.+.
T Consensus 100 na~rl~kaGa~aVklEdg~e~~~~I~al~ 128 (275)
T 1o66_A 100 AAAELMAAGAHMVKLEGGVWMAETTEFLQ 128 (275)
T ss_dssp HHHHHHHTTCSEEEEECSGGGHHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCcHHHHHHHHHHH
Confidence 23467779999994333323334444443
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.53 E-value=1.7 Score=39.13 Aligned_cols=208 Identities=13% Similarity=0.073 Sum_probs=107.7
Q ss_pred HHHHHHHHcCCcEEEecc-C-CcccccccCCCCCCCCH-HHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC
Q 021609 46 EQARVAEEAGACAVMALE-R-VPADIRSQGGVARMSDP-QLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~-~~~~~~~~~G~~~~~~~-~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~ 122 (310)
+.++++.+.|.+.| +.- + .|+.+.. +.+. +.++.+.+..++|+.+-.. ..+.++.+.++|++.|....
T Consensus 34 ~i~~~L~~~Gv~~I-E~g~~~~~~~~~~------~~d~~~~~~~~~~~~~~~~~~l~~--~~~~i~~a~~aG~~~v~i~~ 104 (302)
T 2ftp_A 34 RLVDDLSAAGLDYI-EVGSFVSPKWVPQ------MAGSAEVFAGIRQRPGVTYAALAP--NLKGFEAALESGVKEVAVFA 104 (302)
T ss_dssp HHHHHHHHTTCSEE-EEEECSCTTTCGG------GTTHHHHHHHSCCCTTSEEEEECC--SHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHcCcCEE-EECCCcCcccccc------ccCHHHHHHHhhhcCCCEEEEEeC--CHHHHHHHHhCCcCEEEEEE
Confidence 56888999999976 321 1 1111111 1122 3334444444667765442 45788999999999984211
Q ss_pred C-----------CCc-------hhHHHHHHhcCCCCcEEE----e-----cCCHHHHHHHH----HhCCCEEEEcCCCCC
Q 021609 123 V-----------LTP-------ADEENHINKHNFRIPFVC----G-----CRNLGEALRRI----REGAAMIRTKGEAGT 171 (310)
Q Consensus 123 ~-----------~~~-------~~~~~~i~~~~~~i~~~v----~-----~~t~~ea~~~~----~~Gad~V~v~g~~~~ 171 (310)
. .+. .+..+.+++++..+...+ + -.+++++.+.. +.|+|.|.+.-..+.
T Consensus 105 ~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~ 184 (302)
T 2ftp_A 105 AASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGV 184 (302)
T ss_dssp ESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEESSSC
T ss_pred ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 1 121 233344443333222111 1 13555555433 578887765422111
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeC--CCCCCCHHHHHHHHHcCCCE
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFA--AGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA--~GGI~t~~d~~~~l~~Gadg 248 (310)
.. |. ...++++.+++.. ++|+.+=. ..|. ...+...++++|++-
T Consensus 185 ~~----------------------P~----------~~~~lv~~l~~~~~~~~l~~H~Hn~~Gl-a~An~laAv~aGa~~ 231 (302)
T 2ftp_A 185 GT----------------------AG----------ATRRLIEAVASEVPRERLAGHFHDTYGQ-ALANIYASLLEGIAV 231 (302)
T ss_dssp CC----------------------HH----------HHHHHHHHHTTTSCGGGEEEEEBCTTSC-HHHHHHHHHHTTCCE
T ss_pred cC----------------------HH----------HHHHHHHHHHHhCCCCeEEEEeCCCccH-HHHHHHHHHHhCCCE
Confidence 11 11 1145677777655 57775323 6787 478888999999998
Q ss_pred EEEccccc--------cCCCHHHHHHHHHHHHhc-----cCChhhhhhhhhhcccchhcccCc
Q 021609 249 VFVGSGVF--------KSGDPVKRAQAIVRAVTH-----YSDPEVLAEVSCGLGEAMVGLNLS 298 (310)
Q Consensus 249 V~VGsai~--------~a~dp~~~a~~l~~~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 298 (310)
|=+.=.=+ ++.|+. .+.++..++. ..+-+.+.++++.+.+.. |+.++
T Consensus 232 vd~tv~GlG~cp~a~gr~GN~~--~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~-~~~~~ 291 (302)
T 2ftp_A 232 FDSSVAGLGGCPYAKGATGNVA--SEDVLYLLNGLEIHTGVDMHALVDAGQRICAVL-GKSNG 291 (302)
T ss_dssp EEEBGGGCCBCGGGTTCBCBCB--HHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHH-CCCCS
T ss_pred EEecccccCCCCCCCCCCCChh--HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHh-CCCCC
Confidence 76432101 345552 3334444433 234556666666665533 44433
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=4.1 Score=36.56 Aligned_cols=83 Identities=14% Similarity=0.212 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..++.+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 37 ~lv~~li~~Gv~gl~v~G-t------TGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 109 (301)
T 1xky_A 37 KLVNYLIDNGTTAIVVGG-T------TGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD 109 (301)
T ss_dssp HHHHHHHHTTCCEEEESS-T------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence 467777899999985441 1 1101012111 2333334433 589998765432 3567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHHh
Q 021609 117 YVD-ESEV---LTPADEENHINK 135 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~~ 135 (310)
+++ .+.. .+..++.+..+.
T Consensus 110 avlv~~P~y~~~s~~~l~~~f~~ 132 (301)
T 1xky_A 110 AVMLVAPYYNKPSQEGMYQHFKA 132 (301)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCHHHHHHHHHH
Confidence 996 4432 244555555443
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=1.8 Score=39.96 Aligned_cols=174 Identities=14% Similarity=0.111 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCC
Q 021609 46 EQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~ 122 (310)
++|+++.++|++.+ .+.. |-... ..+.|-. ...++.+++.++.+++|++.-.. +...++.+.+. +|.+ +.+.
T Consensus 124 ~~a~~~k~aGa~~vr~q~fKprTs~-~~f~glg-~egl~~l~~~~~e~Gl~~~te~~--d~~~~~~l~~~-vd~lkIgAr 198 (350)
T 1vr6_A 124 ETAHFLSELGVKVLRGGAYKPRTSP-YSFQGLG-EKGLEYLREAADKYGMYVVTEAL--GEDDLPKVAEY-ADIIQIGAR 198 (350)
T ss_dssp HHHHHHHHTTCCEEECBSCCCCCST-TSCCCCT-HHHHHHHHHHHHHHTCEEEEECS--SGGGHHHHHHH-CSEEEECGG
T ss_pred HHHHHHHHcCCCeeeeeEEeCCCCh-HhhcCCC-HHHHHHHHHHHHHcCCcEEEEeC--CHHHHHHHHHh-CCEEEECcc
Confidence 46778888999986 3332 21110 1111110 11245666667778999987443 23456666677 8998 5666
Q ss_pred CCCchhHHHHHHhcCCCCcEEEe--cC-CHHHHHHHHH----hCC-CEEEE-cCC-CCCcchHHHHHHHHhhccceEeec
Q 021609 123 VLTPADEENHINKHNFRIPFVCG--CR-NLGEALRRIR----EGA-AMIRT-KGE-AGTGNIIEAVRHVRSVMGDIRVLR 192 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~--~~-t~~ea~~~~~----~Ga-d~V~v-~g~-~~~~~~~~~~~~~r~~~~~~~~l~ 192 (310)
.+...++.+.+.+ .+.+++++ .. |.+|...+++ .|. +++-+ +|. .| +
T Consensus 199 ~~~n~~LL~~va~--~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~ty---------------------p 255 (350)
T 1vr6_A 199 NAQNFRLLSKAGS--YNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTF---------------------E 255 (350)
T ss_dssp GTTCHHHHHHHHT--TCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCS---------------------C
T ss_pred cccCHHHHHHHHc--cCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCC---------------------C
Confidence 6777777666653 56777775 33 7778776654 466 44433 332 12 1
Q ss_pred ccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCC--CCCCC--HHHHHHHHHcCCCEEEEccccc
Q 021609 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 193 ~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~--GGI~t--~~d~~~~l~~GadgV~VGsai~ 256 (310)
+-.+ ...++..+..+++..++||+..++ +|-+. ..-...+..+||+|+++=+-+.
T Consensus 256 ~~~~---------~~vdl~ai~~lk~~~~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~ 314 (350)
T 1vr6_A 256 KATR---------NTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPE 314 (350)
T ss_dssp CSSS---------SBCCTTHHHHHHHHBSSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSC
T ss_pred CcCh---------hhhhHHHHHHHHHhhCCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCC
Confidence 1000 122344455566656789863211 14222 2224445678999999887654
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=93.40 E-value=2.3 Score=39.73 Aligned_cols=133 Identities=8% Similarity=0.035 Sum_probs=82.5
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEe--cCCHHHHHHHHH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESEVLTPADEENHINKHNFRIPFVCG--CRNLGEALRRIR 157 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~--~~t~~ea~~~~~ 157 (310)
...+.+.++..+++++.-.+ +.+.++.+.+.|+|.+ +.+..+...++.+.+.+ .+.+++++ ..|.+|...+++
T Consensus 103 ~~~L~~~~~~~Gi~~~stpf--D~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~--~gKPViLStGmaTl~Ei~~Ave 178 (385)
T 1vli_A 103 ILPLLDYCREKQVIFLSTVC--DEGSADLLQSTSPSAFKIASYEINHLPLLKYVAR--LNRPMIFSTAGAEISDVHEAWR 178 (385)
T ss_dssp HHHHHHHHHHTTCEEECBCC--SHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHT--TCSCEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcEEEccC--CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCeEEEECCCCCHHHHHHHHH
Confidence 45666667778999885443 3466778888999999 66666777778777765 45566654 568988877654
Q ss_pred ----hCC-CEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCC
Q 021609 158 ----EGA-AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGG 231 (310)
Q Consensus 158 ----~Ga-d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GG 231 (310)
.|. +++-+|+.. -+|+ .++ ..++..+..+++.. ++||.. ++=
T Consensus 179 ~i~~~Gn~~iiLlhc~s--------------------~YPt-p~~---------~~nL~aI~~Lk~~f~~lpVG~--SdH 226 (385)
T 1vli_A 179 TIRAEGNNQIAIMHCVA--------------------KYPA-PPE---------YSNLSVIPMLAAAFPEAVIGF--SDH 226 (385)
T ss_dssp HHHTTTCCCEEEEEECS--------------------SSSC-CGG---------GCCTTHHHHHHHHSTTSEEEE--EEC
T ss_pred HHHHCCCCcEEEEeccC--------------------CCCC-Chh---------hcCHHHHHHHHHHcCCCCEEe--CCC
Confidence 476 676666421 1121 111 12344566677766 789863 222
Q ss_pred CCC-HHHHHHHHHcCCCEE
Q 021609 232 VAT-PADAAMMMQLGCDGV 249 (310)
Q Consensus 232 I~t-~~d~~~~l~~GadgV 249 (310)
-.. ..-...+..+||+-|
T Consensus 227 t~G~~~~~~AAvAlGA~iI 245 (385)
T 1vli_A 227 SEHPTEAPCAAVRLGAKLI 245 (385)
T ss_dssp CSSSSHHHHHHHHTTCSEE
T ss_pred CCCchHHHHHHHHcCCCEE
Confidence 112 344555668999933
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.63 Score=41.72 Aligned_cols=86 Identities=16% Similarity=0.134 Sum_probs=47.9
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH-------HHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP-------QLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~-------~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.+.||+.| +++...+.. |....... ..++.+++. ++|+.+..+ ..+.++.+.++|++.|
T Consensus 33 ~~a~~~v~~GAdiI-DIGgestrp----ga~~v~~~eE~~Rv~pvi~~l~~~-~~piSIDT~--~~~va~aAl~aGa~iI 104 (280)
T 1eye_A 33 KHGLAMAAAGAGIV-DVGGESSRP----GATRVDPAVETSRVIPVVKELAAQ-GITVSIDTM--RADVARAALQNGAQMV 104 (280)
T ss_dssp HHHHHHHHTTCSEE-EEECC------------------HHHHHHHHHHHHHT-TCCEEEECS--CHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHCCCCEE-EECCccCCC----CCCCCCHHHHHHHHHHHHHHhhcC-CCEEEEeCC--CHHHHHHHHHcCCCEE
Confidence 56889999999965 776221111 11011112 233334443 899988665 3477899999999999
Q ss_pred E-eCCCCCchhHHHHHHhcCCC
Q 021609 119 D-ESEVLTPADEENHINKHNFR 139 (310)
Q Consensus 119 i-~~~~~~~~~~~~~i~~~~~~ 139 (310)
- .+.....++..+.+++++..
T Consensus 105 Ndvsg~~~d~~m~~~~a~~~~~ 126 (280)
T 1eye_A 105 NDVSGGRADPAMGPLLAEADVP 126 (280)
T ss_dssp EETTTTSSCTTHHHHHHHHTCC
T ss_pred EECCCCCCCHHHHHHHHHhCCe
Confidence 4 33222234555555554433
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=93.39 E-value=4.6 Score=36.86 Aligned_cols=82 Identities=18% Similarity=0.090 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..++.+.+.|+++|+.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 59 ~lv~~li~~Gv~Gl~v~G-t------TGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad 131 (332)
T 2r8w_A 59 ALIARLDAAEVDSVGILG-S------TGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGAD 131 (332)
T ss_dssp HHHHHHHHHTCSEEEESS-T------TTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 457777889999985441 1 1101012111 2333334443 589998765432 3567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 132 avlv~~P~Y~~~s~~~l~~~f~ 153 (332)
T 2r8w_A 132 ALLLAPVSYTPLTQEEAYHHFA 153 (332)
T ss_dssp EEEECCCCSSCCCHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHH
Confidence 996 3332 23445555543
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=93.38 E-value=3.7 Score=37.83 Aligned_cols=132 Identities=9% Similarity=-0.020 Sum_probs=83.2
Q ss_pred HHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEe--cCCHHHHHHHHH-
Q 021609 82 QLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESEVLTPADEENHINKHNFRIPFVCG--CRNLGEALRRIR- 157 (310)
Q Consensus 82 ~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~--~~t~~ea~~~~~- 157 (310)
..+.+.++..+++++.-.+ +.+.++.+.+.|+|.+ +.+..+...++.+.+.+ .+.+++++ ..|.+|...+++
T Consensus 94 ~~L~~~~~~~Gi~~~st~~--d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~--~gkPviLstGmat~~Ei~~Ave~ 169 (349)
T 2wqp_A 94 IKLKEYVESKGMIFISTLF--SRAAALRLQRMDIPAYKIGSGECNNYPLIKLVAS--FGKPIILSTGMNSIESIKKSVEI 169 (349)
T ss_dssp HHHHHHHHHTTCEEEEEEC--SHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHT--TCSCEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEEeeC--CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCeEEEECCCCCHHHHHHHHHH
Confidence 3444556678999885443 3466778888999999 66667777788777765 45566554 568888777654
Q ss_pred ---hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCC
Q 021609 158 ---EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVA 233 (310)
Q Consensus 158 ---~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~ 233 (310)
.|.+++-+|+.. -+|+ .+ ...++..+..+++.. ++||.. ++=-.
T Consensus 170 i~~~G~~iiLlhc~s--------------------~Yp~-~~---------~~~nL~ai~~lk~~f~~lpVg~--sdHt~ 217 (349)
T 2wqp_A 170 IREAGVPYALLHCTN--------------------IYPT-PY---------EDVRLGGMNDLSEAFPDAIIGL--SDHTL 217 (349)
T ss_dssp HHHHTCCEEEEECCC--------------------CSSC-CG---------GGCCTHHHHHHHHHCTTSEEEE--ECCSS
T ss_pred HHHcCCCEEEEeccC--------------------CCCC-Ch---------hhcCHHHHHHHHHHCCCCCEEe--CCCCC
Confidence 477887777531 1122 11 122455677777776 799863 22211
Q ss_pred CHHHHHHHHHcCCCEE
Q 021609 234 TPADAAMMMQLGCDGV 249 (310)
Q Consensus 234 t~~d~~~~l~~GadgV 249 (310)
...-...+..+||+-|
T Consensus 218 G~~~~~AAvAlGA~iI 233 (349)
T 2wqp_A 218 DNYACLGAVALGGSIL 233 (349)
T ss_dssp SSHHHHHHHHHTCCEE
T ss_pred cHHHHHHHHHhCCCEE
Confidence 2344555668999933
|
| >2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ... | Back alignment and structure |
|---|
Probab=93.36 E-value=0.51 Score=41.62 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=33.1
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~ 264 (310)
+++|++ .|+| +++|+.+++ ..+.||++||++-++ +++...
T Consensus 205 ~vrIlY--GGSV-~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~i 245 (250)
T 2j27_A 205 ELRILY--GGSV-NGKNARTLYQQRDVNGFLVGGASLK-PEFVDI 245 (250)
T ss_dssp HCCEEE--ESSC-CTTTHHHHHTSTTCCEEEESGGGGS-TTHHHH
T ss_pred cccEEE--cCCC-CHHHHHHHHcCCCCCeeeeehHHHH-HHHHHH
Confidence 478983 6888 588999999 689999999999999 776543
|
| >1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=93.34 E-value=0.26 Score=43.76 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=29.6
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCC
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~d 260 (310)
+++|+ -+|+| +++++.+++ ..+.||++||++-+++++
T Consensus 212 ~vrIl--YGGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~~ 249 (261)
T 1m6j_A 212 ATRIQ--YGGSV-NPANCNELAKKADIDGFLVGGASLDAAK 249 (261)
T ss_dssp HSCEE--ECSCC-CTTTHHHHHTSTTCCEEEESGGGGSHHH
T ss_pred cccEE--EcCCc-CHhhHHHHhcCCCCCeeEecHHHhChHH
Confidence 47898 46888 588888877 679999999999997433
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=93.31 E-value=4.6 Score=36.60 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 47 ~li~~li~~Gv~Gl~v~G-t------TGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad 119 (315)
T 3si9_A 47 NFVEWQITQGINGVSPVG-T------TGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGAD 119 (315)
T ss_dssp HHHHHHHHTTCSEEECSS-T------TTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEeCc-c------ccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 467777899999984441 1 1101112211 2333334433 689999765432 4567888899999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 120 avlv~~P~y~~~~~~~l~~~f~ 141 (315)
T 3si9_A 120 AVLVVTPYYNRPNQRGLYTHFS 141 (315)
T ss_dssp EEEEECCCSSCCCHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHH
Confidence 996 4432 23445555544
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=93.28 E-value=0.52 Score=42.63 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=66.8
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccCCCCCCCCHHHHHHHHhh----cCcceeeccccC---------cHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQGGVARMSDPQLIKEIKQS----VTIPVMAKARIG---------HFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~G~~~~~~~~~i~~i~~~----~~iPv~vk~~~~---------~~~~a~~~ 110 (310)
+.++.++++|+.++ .|+.+ ++.....+|....+..+.+.+|+.. .+.++.++-|.. ..++++.+
T Consensus 98 ~~v~~l~~aGa~gv-~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay 176 (295)
T 1xg4_A 98 RTVKSMIKAGAAGL-HIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAY 176 (295)
T ss_dssp HHHHHHHHHTCSEE-EEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCeEE-EECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHH
Confidence 56888899999997 77632 2322233344344444666666543 245566654433 13567889
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEe-----cCCHHHHHHHHHhCCCEEEEc
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG-----CRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~-----~~t~~ea~~~~~~Gad~V~v~ 166 (310)
.++|||.|......+..++.+..+.. .+|+++- ....-....+.++|++.|...
T Consensus 177 ~eAGAd~i~~e~~~~~~~~~~i~~~~--~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~ 235 (295)
T 1xg4_A 177 VEAGAEMLFPEAITELAMYRQFADAV--QVPILANITEFGATPLFTTDELRSAHVAMALYP 235 (295)
T ss_dssp HHTTCSEEEETTCCSHHHHHHHHHHH--CSCBEEECCSSSSSCCCCHHHHHHTTCSEEEES
T ss_pred HHcCCCEEEEeCCCCHHHHHHHHHHc--CCCEEEEecccCCCCCCCHHHHHHcCCCEEEEC
Confidence 99999999744432234444444332 3343221 111112455678899998764
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.21 Score=43.74 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=56.0
Q ss_pred hhhCcccccCCCHHHHHHHHHcCCc----EEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHH
Q 021609 33 MLRGGVIMDVVTPEQARVAEEAGAC----AVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEA 107 (310)
Q Consensus 33 ~~~~g~i~~~~~~~~A~~~~~~Ga~----~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a 107 (310)
++.+|... ++++.++++.+.|.+ .++.|+. .| ...+.+.++++++.+ ++|+.+...+...+++
T Consensus 138 rl~~g~~~--~~~e~~~~~a~~g~~~l~~~~Vyl~~--------~G--~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a 205 (234)
T 2f6u_A 138 RVTKALCN--IDKELAASYALVGEKLFNLPIIYIEY--------SG--TYGNPELVAEVKKVLDKARLFYGGGIDSREKA 205 (234)
T ss_dssp HHTTBCCC--CCHHHHHHHHHHHHHTTCCSEEEEEC--------TT--SCCCHHHHHHHHHHCSSSEEEEESCCCSHHHH
T ss_pred EeecCCCC--CCHHHHHHHHHhhhhhcCCCEEEEeC--------CC--CcchHHHHHHHHHhCCCCCEEEEecCCCHHHH
Confidence 44455444 478889999888872 3456631 12 234689999999999 9999999988888899
Q ss_pred HHHHHcCCCEEE
Q 021609 108 QILEAIGIDYVD 119 (310)
Q Consensus 108 ~~~~~aGad~Vi 119 (310)
+.+.+ |||+|+
T Consensus 206 ~~~~~-gAd~VI 216 (234)
T 2f6u_A 206 REMLR-YADTII 216 (234)
T ss_dssp HHHHH-HSSEEE
T ss_pred HHHHh-CCCEEE
Confidence 99888 999996
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.86 Score=42.75 Aligned_cols=173 Identities=12% Similarity=0.124 Sum_probs=94.6
Q ss_pred HHHHHHHHcCCcEE-Eec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCC
Q 021609 46 EQARVAEEAGACAV-MAL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~ 122 (310)
++|+++.++|++.+ .+. .|-. -...+.|-. ......+.++++..++|++.-.. +...++.+.+. +|.+ +.+.
T Consensus 160 ~~a~~~k~aGa~~vk~q~fkprt-s~~~f~gl~-~egl~~L~~~~~~~Gl~~~te~~--d~~~~~~l~~~-vd~lkIgs~ 234 (385)
T 3nvt_A 160 AVAESIKAKGLKLIRGGAFKPRT-SPYDFQGLG-LEGLKILKRVSDEYGLGVISEIV--TPADIEVALDY-VDVIQIGAR 234 (385)
T ss_dssp HHHHHHHHTTCCEEECBSSCCCS-STTSCCCCT-HHHHHHHHHHHHHHTCEEEEECC--SGGGHHHHTTT-CSEEEECGG
T ss_pred HHHHHHHHcCCCeEEcccccCCC-ChHhhcCCC-HHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHHhh-CCEEEECcc
Confidence 46778888999987 221 1110 001111111 11234566667778999987544 22456666666 8988 5565
Q ss_pred CCCchhHHHHHHhcCCCCcEEEe--c-CCHHHHHHHHH----hCC-CEEEEcCCCCCcchHHHHHHHHhhccceEeeccc
Q 021609 123 VLTPADEENHINKHNFRIPFVCG--C-RNLGEALRRIR----EGA-AMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~--~-~t~~ea~~~~~----~Ga-d~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
.+...++.+.+.+ .+.+++++ . .|.+|...+++ .|. +++-++-.. + -+++.
T Consensus 235 ~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~-s------------------~yp~~ 293 (385)
T 3nvt_A 235 NMQNFELLKAAGR--VDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGI-R------------------TYEKA 293 (385)
T ss_dssp GTTCHHHHHHHHT--SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCB-C------------------CSCCS
T ss_pred cccCHHHHHHHHc--cCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCC-C------------------CCCCC
Confidence 6667777776654 56677766 3 67788777654 365 455555211 0 11111
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCC--CCCCCH--HHHHHHHHcCCCEEEEcc
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAA--GGVATP--ADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~--GGI~t~--~d~~~~l~~GadgV~VGs 253 (310)
.+ ...++..+..+++..++||+.-.+ +|-+.. .-...+..+||||+++=.
T Consensus 294 ~~---------~~ldl~~i~~lk~~~~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~ 347 (385)
T 3nvt_A 294 TR---------NTLDISAVPILKKETHLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEV 347 (385)
T ss_dssp SS---------SBCCTTHHHHHHHHBSSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEB
T ss_pred Cc---------cccCHHHHHHHHHhcCCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEe
Confidence 10 112344456666656889963211 221111 124456689999999865
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=1 Score=41.12 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=70.5
Q ss_pred cCcceeecc--ccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-c-CCCCcEEEec----CCH-HHHHHHHHhCCC
Q 021609 91 VTIPVMAKA--RIGHFVEAQILEAIGIDYVDESEVLTPADEENHINK-H-NFRIPFVCGC----RNL-GEALRRIREGAA 161 (310)
Q Consensus 91 ~~iPv~vk~--~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~-~~~i~~~v~~----~t~-~ea~~~~~~Gad 161 (310)
...|++..- .+...+.+..+.++|+-+++.....++..+.+.+++ . ..+.++.+.. .+. +.+..+.+.|+|
T Consensus 11 ~~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d 90 (332)
T 2z6i_A 11 IDYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVK 90 (332)
T ss_dssp CSSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCS
T ss_pred CCCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCC
Confidence 467876532 223457778888889866664444555555444433 1 1233333432 222 345667789999
Q ss_pred EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHH
Q 021609 162 MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM 241 (310)
Q Consensus 162 ~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~ 241 (310)
+|.+++.. |.+.++.+++ .++|++. .+.+.+++..+
T Consensus 91 ~V~~~~g~---------------------------------------p~~~i~~l~~-~g~~v~~----~v~~~~~a~~~ 126 (332)
T 2z6i_A 91 VVTTGAGN---------------------------------------PSKYMERFHE-AGIIVIP----VVPSVALAKRM 126 (332)
T ss_dssp EEEECSSC---------------------------------------GGGTHHHHHH-TTCEEEE----EESSHHHHHHH
T ss_pred EEEECCCC---------------------------------------hHHHHHHHHH-cCCeEEE----EeCCHHHHHHH
Confidence 99887521 1123444544 3577763 46788888888
Q ss_pred HHcCCCEEEE
Q 021609 242 MQLGCDGVFV 251 (310)
Q Consensus 242 l~~GadgV~V 251 (310)
.+.|+|++.+
T Consensus 127 ~~~GaD~i~v 136 (332)
T 2z6i_A 127 EKIGADAVIA 136 (332)
T ss_dssp HHTTCSCEEE
T ss_pred HHcCCCEEEE
Confidence 8999999998
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.03 E-value=2 Score=39.91 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=36.6
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVF 256 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~ 256 (310)
+++..+++++.+++||+ +.+.+.+++++.++++.| +|.|++--.-+
T Consensus 229 ~~~~~~~l~~~~~iPI~--~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 275 (384)
T 2pgw_A 229 SIPAMAHVREKVGIPIV--ADQAAFTLYDVYEICRQRAADMICIGPREI 275 (384)
T ss_dssp CHHHHHHHHHHCSSCEE--ESTTCCSHHHHHHHHHTTCCSEEEECHHHH
T ss_pred hHHHHHHHHhhCCCCEE--EeCCcCCHHHHHHHHHcCCCCEEEEcchhh
Confidence 35667778777789998 678899999999999765 89998865544
|
| >3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A* | Back alignment and structure |
|---|
Probab=92.98 E-value=0.11 Score=46.52 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=29.8
Q ss_pred HHHHHHcCCCEEEEcccccc-CCCHHHHHHHHHHHH
Q 021609 238 AAMMMQLGCDGVFVGSGVFK-SGDPVKRAQAIVRAV 272 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~~-a~dp~~~a~~l~~~i 272 (310)
-.++++.|+|.++|||.|++ ++||...+++++++-
T Consensus 220 P~~Ai~~GaD~iVVGRpI~~~a~dP~~aa~~i~~~~ 255 (267)
T 3gdm_A 220 VDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAG 255 (267)
T ss_dssp HHHHHHTTCSEEEECGGGTSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEChhhccCCCCHHHHHHHHHHHH
Confidence 33446899999999999999 999999999886654
|
| >3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.057 Score=49.28 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=29.7
Q ss_pred HHHHH-HcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 238 AAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 238 ~~~~l-~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
-.+++ +.|+|.++|||.|++++||...+++++++-
T Consensus 267 P~~Ai~~~GaD~iVVGRpIt~A~dP~~aa~~i~~~~ 302 (312)
T 3g3d_A 267 PQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAA 302 (312)
T ss_dssp HHHHHHTTCCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEChhhcCCCCHHHHHHHHHHHH
Confidence 34457 799999999999999999999998886643
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.87 E-value=5 Score=35.82 Aligned_cols=82 Identities=18% Similarity=0.193 Sum_probs=46.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|+|
T Consensus 25 ~lv~~li~~Gv~gl~~~G-t------tGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad 97 (292)
T 2vc6_A 25 DLVEWQIEEGSFGLVPCG-T------TGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGAD 97 (292)
T ss_dssp HHHHHHHHTTCSEEETTS-G------GGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCC
Confidence 567778899999984431 1 1101012111 2333334433 589998765432 3567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 98 avlv~~P~y~~~s~~~l~~~f~ 119 (292)
T 2vc6_A 98 GVLIVSPYYNKPTQEGIYQHFK 119 (292)
T ss_dssp EEEEECCCSSCCCHHHHHHHHH
T ss_pred EEEEcCCCCCCCCHHHHHHHHH
Confidence 996 4432 24455555543
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=92.87 E-value=0.2 Score=48.91 Aligned_cols=81 Identities=23% Similarity=0.190 Sum_probs=53.8
Q ss_pred cccCCCHHHHHHHHHcCCcEE-Eecc---CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 39 IMDVVTPEQARVAEEAGACAV-MALE---RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i-~~L~---~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
..++.+++.++.+.++|||++ +.+. .|.+.+-..-|.-.......+.+.++.+++||+....+.+.-++-.++.+|
T Consensus 327 aGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaG 406 (556)
T 4af0_A 327 AGNVVTREQAAQLIAAGADGLRIGMGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALG 406 (556)
T ss_dssp EEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT
T ss_pred eccccCHHHHHHHHHcCCCEEeecCCCCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcC
Confidence 345678899999999999998 4553 233322222222111111234445666899999988877667788899999
Q ss_pred CCEEE
Q 021609 115 IDYVD 119 (310)
Q Consensus 115 ad~Vi 119 (310)
||.|-
T Consensus 407 Ad~VM 411 (556)
T 4af0_A 407 ASAVM 411 (556)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 99994
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=92.83 E-value=0.63 Score=42.12 Aligned_cols=119 Identities=16% Similarity=0.092 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCcEEEeccCCccccccc--CCCCCCCCHHHHHHHHhh----cCcceeeccccCc---------HHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQ--GGVARMSDPQLIKEIKQS----VTIPVMAKARIGH---------FVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~--~G~~~~~~~~~i~~i~~~----~~iPv~vk~~~~~---------~~~a~~~ 110 (310)
+.++.++++|+.++ .|+.+....+.. +|.......+.+.+|+.+ .+.++.+.-|... .+.++.+
T Consensus 102 ~~v~~l~~aGaagv-~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay 180 (298)
T 3eoo_A 102 RTIRSFIKAGVGAV-HLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAY 180 (298)
T ss_dssp HHHHHHHHTTCSEE-EEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCeEE-EECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhh
Confidence 45788899999997 776332211221 222233334567777533 2456666544431 3667888
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEec----CCH-HHHHHHHHhCCCEEEEcC
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGC----RNL-GEALRRIREGAAMIRTKG 167 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~----~t~-~ea~~~~~~Gad~V~v~g 167 (310)
.++|||.|......++.++.+..+... .++.+-. .++ -....+.++|+..|...+
T Consensus 181 ~~AGAD~if~~~~~~~ee~~~~~~~~~--~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~~ 240 (298)
T 3eoo_A 181 VEAGADMIFPEAMKTLDDYRRFKEAVK--VPILANLTEFGSTPLFTLDELKGANVDIALYCC 240 (298)
T ss_dssp HHTTCSEEEECCCCSHHHHHHHHHHHC--SCBEEECCTTSSSCCCCHHHHHHTTCCEEEECS
T ss_pred HhcCCCEEEeCCCCCHHHHHHHHHHcC--CCeEEEeccCCCCCCCCHHHHHHcCCeEEEEch
Confidence 999999997544445666666655532 3332211 110 124456688999987643
|
| >2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A | Back alignment and structure |
|---|
Probab=92.83 E-value=2.2 Score=39.43 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=29.4
Q ss_pred HcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 243 QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 243 ~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
..|+|.++|||+|++++||...++++.+.++.+
T Consensus 305 ~~gadiIvVGR~I~~A~dp~~Aa~~i~~ei~~~ 337 (352)
T 2fds_A 305 DYEKLLINVGRAITKSPNPKKSSESYYNQIIQI 337 (352)
T ss_dssp SGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hcCceEEEECHHHccCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999888743
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=92.75 E-value=5.3 Score=35.90 Aligned_cols=92 Identities=15% Similarity=0.156 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 40 ~lv~~li~~Gv~gi~v~G-t------tGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 112 (304)
T 3l21_A 40 RLANHLVDQGCDGLVVSG-T------TGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH 112 (304)
T ss_dssp HHHHHHHHTTCSEEEESS-T------TTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEeCc-c------ccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 467778899999985441 1 1100012211 2333334443 689998764332 4667888899999
Q ss_pred EEE-eCCC---CCchhHHHHHHh--cCCCCcEEE
Q 021609 117 YVD-ESEV---LTPADEENHINK--HNFRIPFVC 144 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~~--~~~~i~~~v 144 (310)
+++ .+.. .+..++.++++. ...++++++
T Consensus 113 avlv~~P~y~~~s~~~l~~~f~~va~a~~lPiil 146 (304)
T 3l21_A 113 GLLVVTPYYSKPPQRGLQAHFTAVADATELPMLL 146 (304)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEE
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 996 4332 245566655544 223455443
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.72 E-value=5.3 Score=35.77 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 32 ~lv~~li~~Gv~gl~~~G-t------tGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 104 (297)
T 3flu_A 32 DLIDWHIENGTDGIVAVG-T------TGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGAD 104 (297)
T ss_dssp HHHHHHHHTTCCEEEESS-T------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEeCc-c------ccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 467777899999985441 1 1100012211 2333334433 589999765332 4567888899999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 105 avlv~~P~y~~~~~~~l~~~f~ 126 (297)
T 3flu_A 105 YTLSVVPYYNKPSQEGIYQHFK 126 (297)
T ss_dssp EEEEECCCSSCCCHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHH
Confidence 995 4432 23445555543
|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* | Back alignment and structure |
|---|
Probab=92.72 E-value=4.5 Score=34.98 Aligned_cols=171 Identities=9% Similarity=0.046 Sum_probs=87.1
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCCC-CCchhHHHHHHh--cCCCCc-EEEecCCHHHHHH--
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEV-LTPADEENHINK--HNFRIP-FVCGCRNLGEALR-- 154 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~-~~~~~~~~~i~~--~~~~i~-~~v~~~t~~ea~~-- 154 (310)
.+.++++++. ++|+++-......+....+.++||+..+.-.. .+.......+.. ....+. .+++- +......
T Consensus 64 ~~~~~~lr~~-~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~~~~~~~~~~~~~~~~~~~ILivDD-~~~~~~~l~ 141 (259)
T 3luf_A 64 GEAVKVLLER-GLPVVILTADISEDKREAWLEAGVLDYVMKDSRHSLQYAVGLVHRLYLNQQIEVLVVDD-SRTSRHRTM 141 (259)
T ss_dssp SHHHHHHHHT-TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEECS-CHHHHHHHH
T ss_pred HHHHHHHHhC-CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchhHHHHHHHhhhhHhhcCCCcEEEEeC-CHHHHHHHH
Confidence 4678888764 78988765545556777889999998863331 111112222211 011222 23332 2211111
Q ss_pred -HH-HhCCCEEEEcCCCCCcchHHHHHHHHhhc-cceEeecccChhHHHHhhhccCCcHHHHHHHhhc---CCCCEEEeC
Q 021609 155 -RI-REGAAMIRTKGEAGTGNIIEAVRHVRSVM-GDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL---GRLPVVHFA 228 (310)
Q Consensus 155 -~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~-~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~---~~iPVi~iA 228 (310)
.. ..|....... +..++++..++.. .++-++ ...- .....+++++++++. .++||+.+
T Consensus 142 ~~L~~~~~~v~~a~------~~~eal~~l~~~~~~dlvll-D~~m--------P~~dG~~l~~~lr~~~~~~~~~ii~~- 205 (259)
T 3luf_A 142 AQLRKQLLQVHEAS------HAREALATLEQHPAIRLVLV-DYYM--------PEIDGISLVRMLRERYSKQQLAIIGI- 205 (259)
T ss_dssp HHHHTTTCEEEEES------SHHHHHHHHHHCTTEEEEEE-CSCC--------SSSCHHHHHHHHHHHCCTTTSEEEEE-
T ss_pred HHHHHcCcEEEEeC------CHHHHHHHHhcCCCCCEEEE-cCCC--------CCCCHHHHHHHHHhccCCCCCeEEEE-
Confidence 11 2233322221 1134555444321 111111 1110 012237788888764 35788854
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
.+-.+.+...+++++||++.+ .|.-++......+.+.++..
T Consensus 206 -s~~~~~~~~~~a~~~Ga~~yl-----~KP~~~~~L~~~i~~~l~~~ 246 (259)
T 3luf_A 206 -SVSDKRGLSARYLKQGANDFL-----NQPFEPEELQCRVSHNLEAL 246 (259)
T ss_dssp -ECSSSSSHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHHHH
T ss_pred -EccCCHHHHHHHHhcChhheE-----cCCCCHHHHHHHHHHHHHhH
Confidence 444567888889999999985 66556766666666555543
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.74 Score=44.63 Aligned_cols=112 Identities=20% Similarity=0.131 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhc-C-cceeeccccCcHHHHHHHHHcCCCEEE-e
Q 021609 45 PEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSV-T-IPVMAKARIGHFVEAQILEAIGIDYVD-E 120 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~-iPv~vk~~~~~~~~a~~~~~aGad~Vi-~ 120 (310)
.+.++.+.+.|++.+ ++.+ .|.. ....+.++.+++.+ + +|++++... ..+.++.+.++|+|++. +
T Consensus 244 ~e~~~~l~e~gv~~l~Vd~~---------~g~~-~~~~~~i~~lk~~~~~~~~Vi~G~V~-t~~~a~~l~~aGad~I~Vg 312 (503)
T 1me8_A 244 RERVPALVEAGADVLCIDSS---------DGFS-EWQKITIGWIREKYGDKVKVGAGNIV-DGEGFRYLADAGADFIKIG 312 (503)
T ss_dssp HHHHHHHHHHTCSEEEECCS---------CCCS-HHHHHHHHHHHHHHGGGSCEEEEEEC-SHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHhhhccceEEecc---------cCcc-cchhhHHHHHHHhCCCCceEeecccc-CHHHHHHHHHhCCCeEEec
Confidence 366888888899976 2332 1110 01246677777776 5 898876543 34788999999999995 1
Q ss_pred CCC-------------CCch----hHHHHHH----hcCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEcC
Q 021609 121 SEV-------------LTPA----DEENHIN----KHNFRIPFVC--GCRNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 121 ~~~-------------~~~~----~~~~~i~----~~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~g 167 (310)
... .+.. ++.+.+. +++.++++++ ++.+..++.++..+||+.|.+..
T Consensus 313 ~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~ 382 (503)
T 1me8_A 313 IGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGR 382 (503)
T ss_dssp SSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred ccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 111 1111 2222222 1222688888 69999999999999999998753
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=92.56 E-value=5.5 Score=35.56 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 27 ~lv~~li~~Gv~gl~v~G-t------tGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 99 (292)
T 3daq_A 27 AHVNFLLENNAQAIIVNG-T------TAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGAD 99 (292)
T ss_dssp HHHHHHHHTTCCEEEESS-G------GGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCC
Confidence 467778899999985441 1 1100012111 2333344443 689999765332 4567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 100 avlv~~P~y~~~~~~~l~~~f~ 121 (292)
T 3daq_A 100 AIMLITPYYNKTNQRGLVKHFE 121 (292)
T ss_dssp EEEEECCCSSCCCHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHH
Confidence 996 4332 23445555543
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=92.48 E-value=5.7 Score=35.59 Aligned_cols=83 Identities=18% Similarity=0.137 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc---CcceeeccccCc----HHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV---TIPVMAKARIGH----FVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~---~iPv~vk~~~~~----~~~a~~~~~aGa 115 (310)
..++.+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|+
T Consensus 32 ~lv~~li~~Gv~gl~v~G-t------tGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Ga 104 (301)
T 3m5v_A 32 RLIKRQIENGIDAVVPVG-T------TGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGA 104 (301)
T ss_dssp HHHHHHHHTTCCEEECSS-T------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCEEEECc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence 467778899999984431 1 1100012111 2333334433 589998765332 466788889999
Q ss_pred CEEE-eCCC---CCchhHHHHHHh
Q 021609 116 DYVD-ESEV---LTPADEENHINK 135 (310)
Q Consensus 116 d~Vi-~~~~---~~~~~~~~~i~~ 135 (310)
|+++ .+.. .+..++.++.+.
T Consensus 105 davlv~~P~y~~~s~~~l~~~f~~ 128 (301)
T 3m5v_A 105 DGILSVAPYYNKPTQQGLYEHYKA 128 (301)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHH
Confidence 9996 4332 234455555543
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=92.47 E-value=2.7 Score=37.06 Aligned_cols=87 Identities=11% Similarity=0.270 Sum_probs=59.9
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc-cCC-------hh
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH-YSD-------PE 279 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~-~~~-------~~ 279 (310)
...+.+..+++.+++||+. =.. |-++-++.++..+|||+|++--+++. + ...++|.+..++ +++ ++
T Consensus 91 Gs~~~L~~vr~~v~lPvLr-KDF-iid~yQI~eAr~~GADaILLI~a~L~---~-~~l~~l~~~A~~lGl~~LvEVh~~~ 164 (258)
T 4a29_A 91 GSYETLRKIASSVSIPILM-SDF-IVKESQIDDAYNLGADTVLLIVKILT---E-RELESLLEYARSYGMEPLILINDEN 164 (258)
T ss_dssp CCHHHHHHHHTTCSSCEEE-ESC-CCSHHHHHHHHHHTCSEEEEEGGGSC---H-HHHHHHHHHHHHTTCCCEEEESSHH
T ss_pred CCHHHHHHHHHhcCCCEee-ccc-cccHHHHHHHHHcCCCeeehHHhhcC---H-HHHHHHHHHHHHHhHHHHHhcchHH
Confidence 3466778888889999987 133 44899999999999999998877774 3 334445554443 222 23
Q ss_pred hhhhhhhhcccchhcccCccch
Q 021609 280 VLAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
.+ +....+|..+.|+|-++++
T Consensus 165 El-~rAl~~~a~iIGINNRnL~ 185 (258)
T 4a29_A 165 DL-DIALRIGARFIGIMSRDFE 185 (258)
T ss_dssp HH-HHHHHTTCSEEEECSBCTT
T ss_pred HH-HHHhcCCCcEEEEeCCCcc
Confidence 22 2334578999999988764
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=92.32 E-value=0.74 Score=41.73 Aligned_cols=120 Identities=13% Similarity=0.087 Sum_probs=67.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccc--cCCCCCCCCHHHHHHHHhh------cCcceeeccccCc---------HHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRS--QGGVARMSDPQLIKEIKQS------VTIPVMAKARIGH---------FVEAQ 108 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~--~~G~~~~~~~~~i~~i~~~------~~iPv~vk~~~~~---------~~~a~ 108 (310)
+.++.++++|+.++ .|+.+....+. ..|.......+.+.+|+.. .+.++++.-|... .+.++
T Consensus 99 ~tv~~l~~aGaagv-~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ 177 (302)
T 3fa4_A 99 RTTEQYSRSGVAAF-HIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARLR 177 (302)
T ss_dssp HHHHHHHHTTCCEE-EECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCCcEE-EECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHHHHHHH
Confidence 46788899999997 77643221121 1232233334566666433 2556666544431 35678
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEec----CCH-HHHHHHHHhCCCEEEEcC
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGC----RNL-GEALRRIREGAAMIRTKG 167 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~----~t~-~ea~~~~~~Gad~V~v~g 167 (310)
.+.++|||.+......++.++.+..+... +.++.+-. .++ -....+.++|+..|...+
T Consensus 178 ay~eAGAD~ifi~g~~~~~ei~~~~~~~~-~~Pl~~n~~~~g~~p~~~~~eL~~lGv~~v~~~~ 240 (302)
T 3fa4_A 178 AARDAGADVGFLEGITSREMARQVIQDLA-GWPLLLNMVEHGATPSISAAEAKEMGFRIIIFPF 240 (302)
T ss_dssp HHHTTTCSEEEETTCCCHHHHHHHHHHTT-TSCEEEECCTTSSSCCCCHHHHHHHTCSEEEETT
T ss_pred HHHHcCCCEEeecCCCCHHHHHHHHHHhc-CCceeEEEecCCCCCCCCHHHHHHcCCCEEEEch
Confidence 88999999997655555666666665432 23332211 110 124456678998886543
|
| >2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A | Back alignment and structure |
|---|
Probab=92.03 E-value=3 Score=36.83 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=29.3
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEcccccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~ 257 (310)
+++|++ .|+| +++|+.+++.. +.||++||++-++
T Consensus 208 ~vrIlY--GGSV-~~~N~~~l~~~~diDG~LVGgAsL~ 242 (257)
T 2yc6_A 208 HIRIIY--GGSA-NGSNNEKLGQCPNIDGFLVGGASLK 242 (257)
T ss_dssp TCEEEE--ESSC-CTTTHHHHHTSTTCCEEEESGGGGS
T ss_pred cceEEE--cCcc-CHHHHHHHHcCCCCCeeeecHHHHH
Confidence 588883 6888 68899999965 9999999999997
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=92.01 E-value=0.73 Score=41.87 Aligned_cols=119 Identities=11% Similarity=0.047 Sum_probs=64.6
Q ss_pred HHHHHHHHcCCcEEEeccCCccccccc--CCCCCCCCHHHHHHHHhh------cCcceeeccccCc---------HHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQ--GGVARMSDPQLIKEIKQS------VTIPVMAKARIGH---------FVEAQ 108 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~--~G~~~~~~~~~i~~i~~~------~~iPv~vk~~~~~---------~~~a~ 108 (310)
+.++.++++|+.++ .|+.+....+.. +|.......+.+.+|+.+ .+.++.+.-|... .+.++
T Consensus 107 ~~v~~l~~aGaagv-~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ 185 (307)
T 3lye_A 107 RTVEHYIRSGVAGA-HLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQSLGYEECIERLR 185 (307)
T ss_dssp HHHHHHHHTTCCEE-EECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHCHHHHHHHHH
T ss_pred HHHHHHHHcCCeEE-EEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhccCHHHHHHHHH
Confidence 46788899999997 776332211211 222233333556666432 2556666544421 35678
Q ss_pred HHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEE---Ee-cCCH-HHHHHHHHhCCCEEEEc
Q 021609 109 ILEAIGIDYVDESEVLTPADEENHINKHNFRIPFV---CG-CRNL-GEALRRIREGAAMIRTK 166 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~---v~-~~t~-~ea~~~~~~Gad~V~v~ 166 (310)
.+.++|||.+......++.++.+..+... ++++. +. -.++ -....+.++|+..|...
T Consensus 186 ay~eAGAD~ifi~~~~~~~~~~~i~~~~~-~~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~~ 247 (307)
T 3lye_A 186 AARDEGADVGLLEGFRSKEQAAAAVAALA-PWPLLLNSVENGHSPLITVEEAKAMGFRIMIFS 247 (307)
T ss_dssp HHHHTTCSEEEECCCSCHHHHHHHHHHHT-TSCBEEEEETTSSSCCCCHHHHHHHTCSEEEEE
T ss_pred HHHHCCCCEEEecCCCCHHHHHHHHHHcc-CCceeEEeecCCCCCCCCHHHHHHcCCeEEEEC
Confidence 88999999997554445566666655432 23332 21 1111 12345667899888543
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=91.99 E-value=6.3 Score=35.31 Aligned_cols=82 Identities=20% Similarity=0.259 Sum_probs=45.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 29 ~lv~~li~~Gv~gl~v~G-t------tGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 101 (300)
T 3eb2_A 29 RLCDDLIQAGVHGLTPLG-S------TGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGAD 101 (300)
T ss_dssp HHHHHHHHTTCSCBBTTS-G------GGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 467778899999973331 1 1100012211 2333334433 589998754322 4567788899999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 102 avlv~~P~y~~~~~~~l~~~f~ 123 (300)
T 3eb2_A 102 GILAILEAYFPLKDAQIESYFR 123 (300)
T ss_dssp EEEEEECCSSCCCHHHHHHHHH
T ss_pred EEEEcCCCCCCCCHHHHHHHHH
Confidence 996 3332 23445555543
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=91.98 E-value=6.8 Score=35.38 Aligned_cols=182 Identities=13% Similarity=0.054 Sum_probs=107.2
Q ss_pred ccCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHc-
Q 021609 40 MDVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAI- 113 (310)
Q Consensus 40 ~~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~a- 113 (310)
.++.+.+. .+++++.+..-|+++.+. ..+ +.|. .....+..+.+.+++||.+..--+ ..+.+..+.++
T Consensus 32 fNv~n~e~~~Avl~AAee~~sPvIlq~s~g--~~~-y~g~---~~~~~~~~~A~~~~VPVaLHlDHg~~~e~i~~ai~~~ 105 (306)
T 3pm6_A 32 ICVYNLEGILAIIRAAEHKRSPAMILLFPW--AIQ-YADS---LLVRTAASACRAASVPITLHLDHAQDPEIIKRAADLS 105 (306)
T ss_dssp EECSSHHHHHHHHHHHHHTTCCEEEEECHH--HHH-HHTT---HHHHHHHHHHHHCSSCEEEEEEEECCHHHHHHHHHTC
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEEcChh--HHh-hccH---HHHHHHHHHHHHCCCCEEEEcCCCCCHHHHHHHHHhh
Confidence 34555554 445577888876666311 111 1111 113455566667899999864322 46778888898
Q ss_pred -------CCCEEE--eCCCCCch-------hHHHHHHhcCC----CCcEE--------------EecCCHHHHHHHHHhC
Q 021609 114 -------GIDYVD--ESEVLTPA-------DEENHINKHNF----RIPFV--------------CGCRNLGEALRRIREG 159 (310)
Q Consensus 114 -------Gad~Vi--~~~~~~~~-------~~~~~i~~~~~----~i~~~--------------v~~~t~~ea~~~~~~G 159 (310)
|.+-|- .+. ++.+ ++.++....+. .+-.+ .-.++++|+.+..+.|
T Consensus 106 ~~~~~~~GFtSVMiDgS~-~p~eENi~~Tk~vv~~ah~~gvsVEaElG~igG~Edgv~~~~~~~~~yT~Peea~~Fv~Tg 184 (306)
T 3pm6_A 106 RSETHEPGFDSIMVDMSH-FSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVQDTVDLEGVLTTPEESEEFVATG 184 (306)
T ss_dssp ------CCCSEEEECCTT-SCHHHHHHHHHHHHHHHHTTTCEEEECSSBCCCCBTTBCCCTTCCCBCCCHHHHHHHHTTT
T ss_pred hhccCCCCCCEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCccccccccccCCCHHHHHHHHHcC
Confidence 999983 332 2222 33333332221 01000 0136789998877889
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEEeCCCCCCCHHH
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPAD 237 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~iA~GGI~t~~d 237 (310)
+|.+.+.-. +-+ ..++. ....-+++.++++.+.+ ++|++.=.+.|+ ..++
T Consensus 185 vD~LAvaiG--t~H---------------G~Yk~----------~~p~Ld~~~L~~I~~~v~~~vpLVlHGgSG~-p~e~ 236 (306)
T 3pm6_A 185 INWLAPAFG--NVH---------------GNYGP----------RGVQLDYERLQRINEAVGERVGLVLHGADPF-TKEI 236 (306)
T ss_dssp CSEECCCSS--CCS---------------SCCCT----------TCCCCCHHHHHHHHHHHTTTSEEEECSCTTC-CHHH
T ss_pred CCEEEEEcC--ccc---------------cCcCC----------CCCccCHHHHHHHHHHhCCCCCEEeeCCCCC-CHHH
Confidence 998875421 111 00100 01233578888888765 699885455676 5788
Q ss_pred HHHHHHcCCCEEEEccccc
Q 021609 238 AAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~ 256 (310)
+.+++..|..=|=|++.+.
T Consensus 237 i~~ai~~GV~KiNi~Tdl~ 255 (306)
T 3pm6_A 237 FEKCIERGVAKVNVNRAVN 255 (306)
T ss_dssp HHHHHHTTEEEEEESHHHH
T ss_pred HHHHHHcCCeEEEeChHHH
Confidence 9999999999999998775
|
| >2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=1.2 Score=39.18 Aligned_cols=40 Identities=25% Similarity=0.411 Sum_probs=32.0
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~ 264 (310)
+++|++ .|+| +++++.+++ ..+.||++||++-++ +++...
T Consensus 206 ~vrIlY--GGSV-~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~I 246 (251)
T 2vxn_A 206 KLRILY--GGSV-NAANAATLYAKPDINGFLVGGASLK-PEFRDI 246 (251)
T ss_dssp HCEEEE--ESSC-CTTTHHHHHTSTTCCEEEESGGGGS-TTHHHH
T ss_pred cccEEE--cCCc-CHhHHHHHhcCCCCCeeeecHHHHH-HHHHHH
Confidence 478883 6888 588888877 679999999999999 876543
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=91.89 E-value=0.56 Score=42.95 Aligned_cols=118 Identities=14% Similarity=-0.016 Sum_probs=60.3
Q ss_pred HHHHHHH-HcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC---cHHHHHHHHHcCCCE--EE
Q 021609 46 EQARVAE-EAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG---HFVEAQILEAIGIDY--VD 119 (310)
Q Consensus 46 ~~A~~~~-~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~---~~~~a~~~~~aGad~--Vi 119 (310)
+.|+.+. +.||+.| +++...++.....=+ .....+.++++++.+++|+++..--+ ..+.++.+.++|++. ++
T Consensus 84 ~~A~~~v~~~GAdiI-DIg~eStrP~~~~vs-~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~~lI 161 (323)
T 4djd_D 84 RWAQKCVAEYGADLI-YLKLDGADPEGANHS-VDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGENLLL 161 (323)
T ss_dssp HHHHHHHHTTCCSEE-EEECGGGCTTTTCCC-HHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEE
T ss_pred HHHHHHHHHcCCCEE-EEcCccCCCCCCCCC-HHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCCCeE
Confidence 6788887 9999976 764221111100000 00013456667777899999872211 236678888888773 43
Q ss_pred eC-CCCCchhHHHHHHhcCCCCcEEEecCCHHHHHH----HHHhCC--CEEEEc
Q 021609 120 ES-EVLTPADEENHINKHNFRIPFVCGCRNLGEALR----RIREGA--AMIRTK 166 (310)
Q Consensus 120 ~~-~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~----~~~~Ga--d~V~v~ 166 (310)
.+ ......++...+.+++..+..+. ..+.+.+.+ +.++|. +-|.+.
T Consensus 162 Nsv~~~~~~~m~~laa~~g~~vVlmh-~~d~~~~~~l~~~a~~~GI~~e~IIlD 214 (323)
T 4djd_D 162 GNAEQENYKSLTAACMVHKHNIIARS-PLDINICKQLNILINEMNLPLDHIVID 214 (323)
T ss_dssp EEEBTTBCHHHHHHHHHHTCEEEEEC-SSCHHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred EECCcccHHHHHHHHHHhCCeEEEEc-cchHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 21 11223456666655443333322 224433333 345577 334444
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=3.6 Score=35.79 Aligned_cols=175 Identities=17% Similarity=0.166 Sum_probs=104.3
Q ss_pred CH-HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-e
Q 021609 44 TP-EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-E 120 (310)
Q Consensus 44 ~~-~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~ 120 (310)
|| +.|..++++||++| +.|. +|-|. -..+++..+++.++.|+=+-... ..+....+.+.-.+.|. .
T Consensus 26 dpv~aA~~ae~aGAdgITvHlR---eDrRH-------I~d~Dv~~L~~~~~~~lNlE~a~-t~emi~ia~~~kP~~vtLV 94 (243)
T 1m5w_A 26 DPVQAAFIAEQAGADGITVHLR---EDRRH-------ITDRDVRILRQTLDTRMNLEMAV-TEEMLAIAVETKPHFCCLV 94 (243)
T ss_dssp CHHHHHHHHHTTTCSEEEEECC---TTCSS-------SCHHHHHHHHHHCSSEEEEEECS-SHHHHHHHHHHCCSEEEEC
T ss_pred CHHHHHHHHHHcCCCEEEeCCC---CCccc-------CCHHHHHHHHHhcCCCEEeccCC-CHHHHHHHHHcCCCEEEEC
Confidence 44 67888899999999 6773 11121 12578888888877766554432 24678889999999984 3
Q ss_pred CC---------CCCc-------hhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhh
Q 021609 121 SE---------VLTP-------ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSV 184 (310)
Q Consensus 121 ~~---------~~~~-------~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~ 184 (310)
++ ++.. .+..+.++..+..+.++++ .+.+....+.+.|+++|-+|...| ..+
T Consensus 95 PE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFID-pd~~qi~aA~~~GA~~IELhTG~Y----a~a------- 162 (243)
T 1m5w_A 95 PEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFID-ADEEQIKAAAEVGAPFIEIHTGCY----ADA------- 162 (243)
T ss_dssp CCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTTCSEEEEECHHH----HHC-------
T ss_pred CCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCEEEEechhh----hcC-------
Confidence 33 1221 2334444444555666776 467788888899999998874221 100
Q ss_pred ccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 021609 185 MGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFK 257 (310)
Q Consensus 185 ~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~ 257 (310)
.+...- ..... .+...........+-|- |+-|+ +..++..+.. -+..-+-+|-+|+.
T Consensus 163 ---------~~~~~~---~~el~-~i~~aa~~A~~lGL~Vn--AGHgL-~y~Nv~~ia~ip~i~ElnIGHaiia 220 (243)
T 1m5w_A 163 ---------KTDAEQ---AQELA-RIAKAATFAASLGLKVN--AGHGL-TYHNVKAIAAIPEMHELNIGHAIIG 220 (243)
T ss_dssp ---------CSHHHH---HHHHH-HHHHHHHHHHHTTCEEE--EESSC-CTTTHHHHHTCTTEEEEEECHHHHH
T ss_pred ---------CCchhH---HHHHH-HHHHHHHHHHHcCCEEe--cCCCC-CHHHHHHHhhCCCCeEEccCHHHHH
Confidence 000000 00000 01011111122456676 78898 6899988764 36788999988874
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=91.80 E-value=2.1 Score=38.51 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=52.6
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~-------------------~~Ls~eEr----------~~v~~~~~~~~~grvpVia-Gv 88 (301)
T 1xky_A 39 VNYLIDNGTTAIVVGGTTGES-------------------PTLTSEEK----------VALYRHVVSVVDKRVPVIA-GT 88 (301)
T ss_dssp HHHHHHTTCCEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCEEE-EC
T ss_pred HHHHHHcCCCEEEECccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCceEEe-CC
Confidence 455677899999988865422 22232211 1223323221 4699985 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
|+.++.+-+.. +.++|||++++....|..+++....+-|..
T Consensus 89 g~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ 132 (301)
T 1xky_A 89 GSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKA 132 (301)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHH
Confidence 66544443333 335799999999999976776655553433
|
| >3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=2 Score=37.84 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=29.9
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEcccccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~ 257 (310)
+++|+ -+|+| +++++.+++ ..+.||++||++-++
T Consensus 208 ~~rIl--YGGSV-~~~N~~~l~~~~diDG~LVGgASL~ 242 (254)
T 3m9y_A 208 ATRIQ--YGGSV-KPNNIKEYMAQTDIDGALVGGASLK 242 (254)
T ss_dssp TSEEE--ECSCC-CTTTHHHHHTSTTCCEEEESGGGSS
T ss_pred CccEE--EcCCc-CHHHHHHHHcCCCCCeEEeeHHhhC
Confidence 58888 36888 799999999 689999999999996
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=91.66 E-value=7 Score=34.82 Aligned_cols=83 Identities=14% Similarity=0.149 Sum_probs=46.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|+|
T Consensus 26 ~lv~~li~~Gv~gl~~~G-t------tGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 98 (292)
T 2ojp_A 26 KLIDYHVASGTSAIVSVG-T------TGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV 98 (292)
T ss_dssp HHHHHHHHHTCCEEEESS-T------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCC
Confidence 467777889999985441 1 1101012111 2333334433 589998765432 3556677789999
Q ss_pred EEE-eCCC---CCchhHHHHHHh
Q 021609 117 YVD-ESEV---LTPADEENHINK 135 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~~ 135 (310)
+++ .+.. .+..++.++.+.
T Consensus 99 avlv~~P~y~~~s~~~l~~~f~~ 121 (292)
T 2ojp_A 99 GCLTVTPYYNRPSQEGLYQHFKA 121 (292)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHH
Confidence 995 4432 245566655544
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=91.64 E-value=1.6 Score=40.33 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=56.4
Q ss_pred CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 137 ~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
..++.++.++.+.+.+..+.+.|++++.+..+. -.++.+++.+
T Consensus 102 ~~Gi~~~st~~d~~svd~l~~~~v~~~KI~S~~-------------------------------------~~n~~LL~~v 144 (349)
T 2wqp_A 102 SKGMIFISTLFSRAAALRLQRMDIPAYKIGSGE-------------------------------------CNNYPLIKLV 144 (349)
T ss_dssp HTTCEEEEEECSHHHHHHHHHHTCSCEEECGGG-------------------------------------TTCHHHHHHH
T ss_pred HhCCeEEEeeCCHHHHHHHHhcCCCEEEECccc-------------------------------------ccCHHHHHHH
Confidence 468999999999998888888999998885321 2246788888
Q ss_pred hhcCCCCEEEeCCCCCCCHHHHHHHH----HcCCCEEEE
Q 021609 217 KQLGRLPVVHFAAGGVATPADAAMMM----QLGCDGVFV 251 (310)
Q Consensus 217 ~~~~~iPVi~iA~GGI~t~~d~~~~l----~~GadgV~V 251 (310)
.+ .+.||+ .+-|..|.+++..+. ..|.+-+++
T Consensus 145 a~-~gkPvi--LstGmat~~Ei~~Ave~i~~~G~~iiLl 180 (349)
T 2wqp_A 145 AS-FGKPII--LSTGMNSIESIKKSVEIIREAGVPYALL 180 (349)
T ss_dssp HT-TCSCEE--EECTTCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred Hh-cCCeEE--EECCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 77 578998 467778999987665 357765554
|
| >1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* | Back alignment and structure |
|---|
Probab=91.63 E-value=0.53 Score=41.41 Aligned_cols=38 Identities=24% Similarity=0.420 Sum_probs=30.3
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHH
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~ 262 (310)
+++|++ .|+| +++++.+++ ..+.||++||++-++ +++.
T Consensus 202 ~vrIlY--GGSV-~~~N~~~l~~~~diDG~LVGgAsL~-~~F~ 240 (247)
T 1ney_A 202 ELRILY--GGSA-NGSNAVTFKDKADVDGFLVGGASLK-PEFV 240 (247)
T ss_dssp HCCEEE--ESSC-CTTTGGGGTTCTTCCEEEESGGGGS-THHH
T ss_pred cceEEE--cCCc-CHhHHHHHHcCCCCCeeEeehHHHH-HHHH
Confidence 478983 6888 578877777 679999999999998 6644
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=91.62 E-value=7.5 Score=35.10 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 48 ~lv~~li~~Gv~Gl~v~G-t------TGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gad 120 (314)
T 3qze_A 48 KLVDFHLQEGTNAIVAVG-T------TGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGAD 120 (314)
T ss_dssp HHHHHHHHHTCCEEEESS-G------GGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence 467777899999985441 1 1100012111 2333334433 589998765432 4567888899999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 121 avlv~~P~y~~~s~~~l~~~f~ 142 (314)
T 3qze_A 121 ACLLVTPYYNKPTQEGMYQHFR 142 (314)
T ss_dssp EEEEECCCSSCCCHHHHHHHHH
T ss_pred EEEEcCCCCCCCCHHHHHHHHH
Confidence 996 4332 23445555543
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=7.7 Score=35.08 Aligned_cols=184 Identities=15% Similarity=0.126 Sum_probs=104.1
Q ss_pred ccCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccC-cHHHHHHHHHc
Q 021609 40 MDVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIG-HFVEAQILEAI 113 (310)
Q Consensus 40 ~~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~-~~~~a~~~~~a 113 (310)
.++.+.+. .+++++.+..-|+++.+. ..+ +.|... ....++...+. .++||.+.+--+ .++.+..+.++
T Consensus 22 fNv~n~e~~~avi~AAee~~sPvIlq~s~g--~~~-y~g~~~--~~~~v~~aa~~~~~VPValHLDHg~~~e~~~~ai~~ 96 (307)
T 3n9r_A 22 FNFVNFEMLNAIFEAGNEENSPLFIQASEG--AIK-YMGIDM--AVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKA 96 (307)
T ss_dssp EECSSHHHHHHHHHHHHHHTCCEEEEEEHH--HHH-HHCHHH--HHHHHHHHHHHSTTSCEEEEEEEECSHHHHHHHHHH
T ss_pred EeeCCHHHHHHHHHHHHHhCCCEEEEcChh--hhh-hCCHHH--HHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHh
Confidence 34555654 445577777766666311 111 111100 01233344444 689999864322 56888899999
Q ss_pred CCCEEE--eCCCCCch-------hHHHHHHhcCCCCc--E--------EE-------ecCCHHHHHHHH-HhCCCEEEEc
Q 021609 114 GIDYVD--ESEVLTPA-------DEENHINKHNFRIP--F--------VC-------GCRNLGEALRRI-REGAAMIRTK 166 (310)
Q Consensus 114 Gad~Vi--~~~~~~~~-------~~~~~i~~~~~~i~--~--------~v-------~~~t~~ea~~~~-~~Gad~V~v~ 166 (310)
|.+-|- .+. ++.+ ++.++..+.+..+. + .+ -.++++++.+-. +.|+|.+.+.
T Consensus 97 GFtSVMiDgS~-~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAva 175 (307)
T 3n9r_A 97 GFTSVMIDASH-HAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPA 175 (307)
T ss_dssp TCSEEEECCTT-SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC----------CCSCCHHHHHHHHHHHCCSEEEEC
T ss_pred CCCcEEEECCC-CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHHHCCCEEEEe
Confidence 999983 332 2322 33344333221110 0 00 125788888855 5799998764
Q ss_pred CCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCC----------------
Q 021609 167 GEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAG---------------- 230 (310)
Q Consensus 167 g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~G---------------- 230 (310)
-.+--| .++.. ....-+++.++++++..++|++.=.+.
T Consensus 176 iGt~HG-----------------~Yk~~---------~~p~Ld~~~L~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~gg~ 229 (307)
T 3n9r_A 176 IGTSHG-----------------AFKFK---------GEPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGD 229 (307)
T ss_dssp SSCCSS-----------------SBCCS---------SSCCCCHHHHHHHHHHHCSCEEESSCCCCCHHHHHHHHHTTCC
T ss_pred cCCccc-----------------ccCCC---------CCCccCHHHHHHHHhcCCCCeEEeCCCCcchHHHHHHHHhcCc
Confidence 211101 01100 012334777888876667898753444
Q ss_pred -----CCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 231 -----GVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 231 -----GI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
|+ ..+++.++++.|..=|=+++.+-
T Consensus 230 ~~~~~G~-p~e~i~~ai~~GV~KiNi~Tdl~ 259 (307)
T 3n9r_A 230 LKGSKGV-PFEFLQESVKGGINKVNTDTDLR 259 (307)
T ss_dssp CTTCBCC-CHHHHHHHHHTTEEEEEECHHHH
T ss_pred cCCCCCC-CHHHHHHHHHcCceEEEechHHH
Confidence 77 58999999999999999998776
|
| >2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A | Back alignment and structure |
|---|
Probab=91.54 E-value=1.1 Score=42.26 Aligned_cols=35 Identities=14% Similarity=0.387 Sum_probs=30.0
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
++.++ +|||| +.+.+.++.+.|+|.+.+|+.+..+
T Consensus 270 ~~~I~--aSggl-~~~~i~~l~~~GvD~~gvGt~l~~~ 304 (398)
T 2i1o_A 270 DIKIM--VSGGL-DENTVKKLREAGAEAFGVGTSISSA 304 (398)
T ss_dssp TSEEE--EESSC-CHHHHHHHHHTTCCEEEECHHHHTC
T ss_pred ceEEE--EeCCC-CHHHHHHHHHcCCCEEEeCcccCCC
Confidence 44454 89999 7999999999999999999988864
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=91.52 E-value=3.6 Score=37.98 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=62.0
Q ss_pred CCCCCCCHHHHHHHHhhcCcceeeccccCcHHH----HHHHHHcCCCEEE--eCCCCC--ch----hHHHHHHhcCCCCc
Q 021609 74 GVARMSDPQLIKEIKQSVTIPVMAKARIGHFVE----AQILEAIGIDYVD--ESEVLT--PA----DEENHINKHNFRIP 141 (310)
Q Consensus 74 G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~----a~~~~~aGad~Vi--~~~~~~--~~----~~~~~i~~~~~~i~ 141 (310)
||..+.++.+++++.+ ++.||+++-.....++ ++.+.+.|.+.++ +....+ +. ..+..+++..++++
T Consensus 118 ~S~~~~N~pLL~~va~-~gKPviLstGmstl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lp 196 (350)
T 3g8r_A 118 ASCSFTDWPLLERIAR-SDKPVVASTAGARREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVR 196 (350)
T ss_dssp CSSSTTCHHHHHHHHT-SCSCEEEECTTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSE
T ss_pred CcccccCHHHHHHHHh-hCCcEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCC
Confidence 6667899999999875 7999999877654333 2444557888776 443322 11 23445554434788
Q ss_pred EEEecCCH----HHHHHHHHhCCCEEEEcC
Q 021609 142 FVCGCRNL----GEALRRIREGAAMIRTKG 167 (310)
Q Consensus 142 ~~v~~~t~----~ea~~~~~~Gad~V~v~g 167 (310)
++.+-|+. .-+..+..+||++|=.|.
T Consensus 197 VG~SdHt~g~~~~~~~AAvAlGA~vIEkH~ 226 (350)
T 3g8r_A 197 IGYSTHEDPDLMEPIMLAVAQGATVFEKHV 226 (350)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTCCEEEEEB
T ss_pred EEcCCCCCCCccHHHHHHHHcCCCEEEEec
Confidence 88887774 334577899999988774
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.44 E-value=7.9 Score=34.98 Aligned_cols=82 Identities=22% Similarity=0.259 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..++.+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 49 ~lv~~li~~Gv~Gi~v~G-t------TGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 121 (315)
T 3na8_A 49 RSIERLIDGGVHAIAPLG-S------TGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAE 121 (315)
T ss_dssp HHHHHHHHTTCSEEECSS-G------GGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 467777899999984441 1 1100012111 2333334433 689998765332 4567888899999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++++
T Consensus 122 avlv~~P~y~~~s~~~l~~~f~ 143 (315)
T 3na8_A 122 AVMVLPISYWKLNEAEVFQHYR 143 (315)
T ss_dssp EEEECCCCSSCCCHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHH
Confidence 996 3332 23455555544
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=91.40 E-value=3.2 Score=38.82 Aligned_cols=93 Identities=11% Similarity=0.055 Sum_probs=61.8
Q ss_pred CCCCCCCHHHHHHHHhhcCcceeeccccCcHHH----HHHHHHcCC-CEEE--eCCCCC--ch----hHHHHHHhcCCCC
Q 021609 74 GVARMSDPQLIKEIKQSVTIPVMAKARIGHFVE----AQILEAIGI-DYVD--ESEVLT--PA----DEENHINKHNFRI 140 (310)
Q Consensus 74 G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~----a~~~~~aGa-d~Vi--~~~~~~--~~----~~~~~i~~~~~~i 140 (310)
||..+.++.+++++.+ ++.||+++-.....++ ++.+.+.|. +.++ +....+ +. ..+..+++..+++
T Consensus 141 gS~~~~N~pLL~~va~-~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~l 219 (385)
T 1vli_A 141 ASYEINHLPLLKYVAR-LNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEA 219 (385)
T ss_dssp CGGGTTCHHHHHHHHT-TCSCEEEECTTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTS
T ss_pred CcccccCHHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCC
Confidence 6767899999999875 6999999877654322 355556888 6665 333221 11 2244554432378
Q ss_pred cEEEecCC---HHHHHHHHHhCCCEEEEcC
Q 021609 141 PFVCGCRN---LGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 141 ~~~v~~~t---~~ea~~~~~~Gad~V~v~g 167 (310)
+++.+-|+ ..-+..+..+||++|=.|.
T Consensus 220 pVG~SdHt~G~~~~~~AAvAlGA~iIEkHf 249 (385)
T 1vli_A 220 VIGFSDHSEHPTEAPCAAVRLGAKLIEKHF 249 (385)
T ss_dssp EEEEEECCSSSSHHHHHHHHTTCSEEEEEB
T ss_pred CEEeCCCCCCchHHHHHHHHcCCCEEEeCC
Confidence 88888777 4556667899999988773
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=91.31 E-value=0.78 Score=40.57 Aligned_cols=71 Identities=28% Similarity=0.288 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCC-CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVA-RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
..+.+.++++.+.|++.++.+.+. . |+. ....++.++.+++.+++|+++...+...+++..+.++|||+|+
T Consensus 134 ~~~~~~a~~~~~~gad~v~~~~~~---~----Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgVi 205 (264)
T 1xm3_A 134 SDDVVLARKLEELGVHAIMPGASP---I----GSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVL 205 (264)
T ss_dssp CSCHHHHHHHHHHTCSCBEECSSS---T----TCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred CCCHHHHHHHHHhCCCEEEECCcc---c----CCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence 346778888888888865332110 0 111 1224778899988889999998888767889999999999996
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=91.25 E-value=0.8 Score=41.40 Aligned_cols=81 Identities=11% Similarity=0.100 Sum_probs=55.8
Q ss_pred EEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC
Q 021609 142 FVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR 221 (310)
Q Consensus 142 ~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~ 221 (310)
++.+..+.+.|+...+.|++.|.+--...+ ++ +.+... .-....+.++++++.++
T Consensus 24 v~~d~~~~e~A~~ye~~GA~~lsvLe~~~~-Di--------------~~~~g~----------~R~~~~~~i~~i~~~v~ 78 (297)
T 4adt_A 24 VIMDVKNVEQAKIAEKAGAIGVMILENIPS-EL--------------RNTDGV----------ARSVDPLKIEEIRKCIS 78 (297)
T ss_dssp EEEEESSHHHHHHHHHHTCSEEEECCCCC--------------------CCCC----------CCCCCHHHHHHHHTTCC
T ss_pred cccCCCcHHHHHHHHHcCCCEEEEecCCCC-cc--------------hhcCCc----------ccCCCHHHHHHHHHhcC
Confidence 455778888898889999999876521100 10 000000 01235788999999899
Q ss_pred CCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 222 LPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
+||++ -.++...+++..+..+|||.|
T Consensus 79 iPvl~--k~~i~~ide~qil~aaGAD~I 104 (297)
T 4adt_A 79 INVLA--KVRIGHFVEAQILEELKVDML 104 (297)
T ss_dssp SEEEE--EEETTCHHHHHHHHHTTCSEE
T ss_pred CCEEE--eccCCcHHHHHHHHHcCCCEE
Confidence 99984 468878888888889999999
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=91.21 E-value=7.9 Score=34.60 Aligned_cols=82 Identities=16% Similarity=0.198 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 25 ~lv~~li~~Gv~gi~v~G-t------tGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad 97 (297)
T 2rfg_A 25 GLVDWQIKHGAHGLVPVG-T------TGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGAD 97 (297)
T ss_dssp HHHHHHHHTTCSEEECSS-G------GGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCC
Confidence 567778899999984431 1 1101012111 2333334433 589998765432 3567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.+..+
T Consensus 98 avlv~~P~y~~~s~~~l~~~f~ 119 (297)
T 2rfg_A 98 AVLCVAGYYNRPSQEGLYQHFK 119 (297)
T ss_dssp EEEECCCTTTCCCHHHHHHHHH
T ss_pred EEEEcCCCCCCCCHHHHHHHHH
Confidence 996 3332 23445555443
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=7.8 Score=34.49 Aligned_cols=83 Identities=20% Similarity=0.238 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..++.+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|+|
T Consensus 26 ~lv~~li~~Gv~gl~~~G-t------tGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Gad 98 (291)
T 3a5f_A 26 ELIEWHIKSKTDAIIVCG-T------TGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGVD 98 (291)
T ss_dssp HHHHHHHHTTCCEEEESS-G------GGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCCC
Confidence 567778899999985441 1 1101112211 2333334433 589998765432 3567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHHh
Q 021609 117 YVD-ESEV---LTPADEENHINK 135 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~~ 135 (310)
+++ .+.. .+..++.++.+.
T Consensus 99 avlv~~P~y~~~s~~~l~~~f~~ 121 (291)
T 3a5f_A 99 GLLVITPYYNKTTQKGLVKHFKA 121 (291)
T ss_dssp EEEEECCCSSCCCHHHHHHHC-C
T ss_pred EEEEcCCCCCCCCHHHHHHHHHH
Confidence 996 4432 244555555543
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=91.14 E-value=4.2 Score=36.00 Aligned_cols=203 Identities=16% Similarity=0.139 Sum_probs=112.7
Q ss_pred eeeeccCcceeecchhhhhhCcccccCCCH-HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCc
Q 021609 16 ITETKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTI 93 (310)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~-~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~i 93 (310)
++.++--.+++-.--+-.|+..--...-|| +.|..++++||++| +.|.+ |.|. -..+++..+++.+.+
T Consensus 26 ~~~~~m~~LgVNIDhVAtLRnARg~~~PDpv~aA~~ae~aGAdGITvHlRe---DrRH-------I~d~Dv~~L~~~i~t 95 (278)
T 3gk0_A 26 LTTPAAIDLGVNIDHVATLRNARGTAYPDPVRAALAAEDAGADAITLHLRE---DRRH-------IVDADVRTLRPRVKT 95 (278)
T ss_dssp CCCGGGSEEEEECHHHHHHHHHHSSSCSCHHHHHHHHHHTTCSEEEEECCT---TCSS-------SCHHHHHHHHHHCSS
T ss_pred cCCccccEEEechHhhhhhhccCCCCCCCHHHHHHHHHHcCCCEEEeccCC---Cccc-------CCHHHHHHHHHHcCC
Confidence 334443344544444444431111122334 67777899999998 67731 1111 125788888888877
Q ss_pred ceeeccccCcHHHHHHHHHcCCCEEE-eCCC---------CC----ch---hHHHHHHhcCCCCcEEEecCCHHHHHHHH
Q 021609 94 PVMAKARIGHFVEAQILEAIGIDYVD-ESEV---------LT----PA---DEENHINKHNFRIPFVCGCRNLGEALRRI 156 (310)
Q Consensus 94 Pv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~---------~~----~~---~~~~~i~~~~~~i~~~v~~~t~~ea~~~~ 156 (310)
|+=+-... ..+..+.+.+.--+.|. .++. +. .. +.++.++..+..+.++++ .+.+....+.
T Consensus 96 ~lNlEma~-t~emi~ial~~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFID-pd~~qI~aA~ 173 (278)
T 3gk0_A 96 RMNLECAV-TPEMLDIACEIRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFID-PDEAQIRAAH 173 (278)
T ss_dssp CEEEEECS-SHHHHHHHHHHCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHH
T ss_pred CEEeecCC-CHHHHHHHHHcCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHH
Confidence 77654432 34778889999999983 3321 11 22 334444444455567776 4677788888
Q ss_pred HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHH
Q 021609 157 REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA 236 (310)
Q Consensus 157 ~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~ 236 (310)
+.|+|+|-++...|... .+.... ...+. .+...........+-|= |+-|+ +.+
T Consensus 174 ~~GAd~IELhTG~YA~a--------------------~~~~~~---~~el~-rl~~aA~~A~~lGL~Vn--AGHGL-~y~ 226 (278)
T 3gk0_A 174 ETGAPVIELHTGRYADA--------------------HDAAEQ---QREFE-RIATGVDAGIALGLKVN--AGHGL-HYT 226 (278)
T ss_dssp HHTCSEEEECCHHHHTC--------------------SSHHHH---HHHHH-HHHHHHHHHHHTTCEEE--ECTTC-CTT
T ss_pred HhCcCEEEEecchhhcc--------------------CCchhH---HHHHH-HHHHHHHHHHHcCCEEe--cCCCC-CHH
Confidence 99999998873211100 000000 00000 01111111222456665 78898 688
Q ss_pred HHHHHHH-cCCCEEEEcccccc
Q 021609 237 DAAMMMQ-LGCDGVFVGSGVFK 257 (310)
Q Consensus 237 d~~~~l~-~GadgV~VGsai~~ 257 (310)
++..+.+ -+..-+-+|-+|+.
T Consensus 227 Nv~~ia~ip~i~ElnIGHaiIa 248 (278)
T 3gk0_A 227 NVQAIAALPGIAELNIGHAIVA 248 (278)
T ss_dssp THHHHHTCTTEEEEEECHHHHH
T ss_pred HHHHHHhCCCCeEEecCHHHHH
Confidence 8876543 37788999988874
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=91.12 E-value=2.6 Score=38.98 Aligned_cols=46 Identities=11% Similarity=0.081 Sum_probs=38.2
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVF 256 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~ 256 (310)
+++..+++++.+++||+ +.+.+.+++++.++++.| +|.|++--.-.
T Consensus 225 ~~~~~~~l~~~~~iPI~--~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 271 (379)
T 2rdx_A 225 SYEECQQVRRVADQPMK--LDECVTGLHMAQRIVADRGAEICCLKISNL 271 (379)
T ss_dssp SHHHHHHHHTTCCSCEE--ECTTCCSHHHHHHHHHHTCCSEEEEETTTT
T ss_pred CHHHHHHHHhhCCCCEE--EeCCcCCHHHHHHHHHcCCCCEEEEecccc
Confidence 57778888888899998 789999999999999765 89998865444
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=91.11 E-value=1.7 Score=39.95 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=37.3
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVF 256 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~ 256 (310)
+++..+++++..++||+ +.+.+.+++++.++++.| +|.|++--.-+
T Consensus 228 ~~~~~~~l~~~~~iPI~--~de~~~~~~~~~~~i~~~~~d~v~ik~~~~ 274 (359)
T 1mdl_A 228 DYEGHQRIQSKLNVPVQ--MGENWLGPEEMFKALSIGACRLAMPDAMKI 274 (359)
T ss_dssp CHHHHHHHHHTCSSCEE--ECTTCCSHHHHHHHHHTTCCSEECCBTTTT
T ss_pred hHHHHHHHHHhCCCCEE--eCCCCCCHHHHHHHHHcCCCCEEeecchhh
Confidence 46677888887889998 789999999999999775 89988764443
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=91.04 E-value=2.3 Score=37.95 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=52.2
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. ++++.++- .++++.+.+. .++||++ ..
T Consensus 27 v~~li~~Gv~gl~~~GttGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~gr~pvia-Gv 76 (289)
T 2yxg_A 27 INFLIENGVSGIVAVGTTGES-------------------PTLSHEEH----------KKVIEKVVDVVNGRVQVIA-GA 76 (289)
T ss_dssp HHHHHHTTCSEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSEEEE-EC
T ss_pred HHHHHHCCCCEEEECccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-eC
Confidence 455677899999988865422 22232211 1223333221 4689985 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
|+.++.+-+.. +.++|||++++....+..++.....+-|..
T Consensus 77 g~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ 120 (289)
T 2yxg_A 77 GSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGK 120 (289)
T ss_dssp CCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 66544443332 335799999999999976666555543333
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.03 E-value=8.1 Score=34.42 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 25 ~lv~~li~~Gv~gl~~~G-t------tGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad 97 (294)
T 2ehh_A 25 NLIEFHVDNGTDAILVCG-T------TGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGAD 97 (294)
T ss_dssp HHHHHHHTTTCCEEEESS-T------TTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCCEEEECc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 467777889999985441 1 1101112211 2333334433 589998765432 3567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 98 avlv~~P~y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 98 GALVVVPYYNKPTQRGLYEHFK 119 (294)
T ss_dssp EEEEECCCSSCCCHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHH
Confidence 996 4432 24455555543
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=91.03 E-value=8.1 Score=34.36 Aligned_cols=82 Identities=21% Similarity=0.264 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|+|
T Consensus 25 ~lv~~li~~Gv~gl~~~G-t------tGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 97 (289)
T 2yxg_A 25 ENINFLIENGVSGIVAVG-T------TGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGAD 97 (289)
T ss_dssp HHHHHHHHTTCSEEEESS-T------TTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCCCEEEECc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 467778899999985441 1 1101112111 2333334433 589998765432 3567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 98 avlv~~P~y~~~s~~~l~~~f~ 119 (289)
T 2yxg_A 98 AVLSITPYYNKPTQEGLRKHFG 119 (289)
T ss_dssp EEEEECCCSSCCCHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHH
Confidence 996 4432 24455555543
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.02 E-value=8.4 Score=34.56 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. ..|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 41 ~lv~~li~~Gv~gl~v~G-------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gad 113 (304)
T 3cpr_A 41 EVAAYLVDKGLDSLVLAG-------TTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGAD 113 (304)
T ss_dssp HHHHHHHHTTCCEEEESS-------TTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECc-------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCC
Confidence 467777889999985441 11101112211 2333334433 589998765432 4567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 114 avlv~~P~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 114 GLLVVTPYYSKPSQEGLLAHFG 135 (304)
T ss_dssp EEEEECCCSSCCCHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHH
Confidence 995 4432 23445555543
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.92 E-value=2.4 Score=38.17 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=51.5
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 43 v~~li~~Gv~gl~v~GttGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~grvpvia-Gv 92 (304)
T 3cpr_A 43 AAYLVDKGLDSLVLAGTTGES-------------------PTTTAAEK----------LELLKAVREEVGDRAKLIA-GV 92 (304)
T ss_dssp HHHHHHTTCCEEEESSTTTTT-------------------TTSCHHHH----------HHHHHHHHHHHTTTSEEEE-EC
T ss_pred HHHHHHcCCCEEEECccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEe-cC
Confidence 455677899999988865422 12222211 1223333221 4689985 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
|+.++.+-+.. +.++|||++++....+..+++....+-|.
T Consensus 93 g~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 93 GTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFG 135 (304)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHH
Confidence 66544443332 33579999999999997666655554333
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.22 Score=42.23 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=37.9
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~ 122 (310)
++.++++++.+++|+++...+...++++.+.++||++|.++.
T Consensus 139 p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs~ 180 (192)
T 3kts_A 139 PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTSN 180 (192)
T ss_dssp HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEECC
T ss_pred HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeCC
Confidence 789999999999999999988888999999999999996443
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=90.88 E-value=2.3 Score=38.35 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=50.2
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 38 v~~li~~Gv~Gl~v~GtTGE~-------------------~~Ls~eEr----------~~v~~~~~~~~~grvpVia-Gv 87 (303)
T 2wkj_A 38 VQFNIQQGIDGLYVGGSTGEA-------------------FVQSLSER----------EQVLEIVAEEAKGKIKLIA-HV 87 (303)
T ss_dssp HHHHHHTTCSEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTTSEEEE-EC
T ss_pred HHHHHHcCCCEEEECeeccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-ec
Confidence 455677899999988865422 22232211 1223333221 4689985 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHH
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
|+.++.+.+.. +.++|||++++....|..+++....+
T Consensus 88 g~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~ 127 (303)
T 2wkj_A 88 GCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCD 127 (303)
T ss_dssp CCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHH
Confidence 65544443322 33579999999999997666655544
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=9.6 Score=34.87 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++|+.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 56 ~lv~~li~~Gv~Gl~v~G-t------TGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad 128 (343)
T 2v9d_A 56 ALIDDLIKAGVDGLFFLG-S------GGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGAD 128 (343)
T ss_dssp HHHHHHHHTTCSCEEESS-T------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEeCc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence 467777889999985441 1 1101112111 2333334443 589998765332 3567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHHh
Q 021609 117 YVD-ESEV---LTPADEENHINK 135 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~~ 135 (310)
+++ .+.. .+..++.++.+.
T Consensus 129 avlv~~P~Y~~~s~~~l~~~f~~ 151 (343)
T 2v9d_A 129 GIVVINPYYWKVSEANLIRYFEQ 151 (343)
T ss_dssp EEEEECCSSSCCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHH
Confidence 995 4432 244555555543
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=90.80 E-value=8.5 Score=34.24 Aligned_cols=82 Identities=21% Similarity=0.243 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|+|
T Consensus 26 ~lv~~li~~Gv~gl~~~G-t------tGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad 98 (291)
T 3tak_A 26 KLVEWHIEQGTNSIVAVG-T------TGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGAD 98 (291)
T ss_dssp HHHHHHHHHTCCEEEESS-T------TTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHCCCCEEEECc-c------ccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence 467777899999985441 1 1100012211 2333334433 589998765432 4567788899999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 99 avlv~~P~y~~~~~~~l~~~f~ 120 (291)
T 3tak_A 99 AALLVTPYYNKPTQEGLYQHYK 120 (291)
T ss_dssp EEEEECCCSSCCCHHHHHHHHH
T ss_pred EEEEcCCCCCCCCHHHHHHHHH
Confidence 996 4332 23445555544
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=90.77 E-value=2.5 Score=37.79 Aligned_cols=90 Identities=23% Similarity=0.335 Sum_probs=52.7
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 28 v~~li~~Gv~gl~~~GttGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~gr~pvia-Gv 77 (292)
T 2ojp_A 28 IDYHVASGTSAIVSVGTTGES-------------------ATLNHDEH----------ADVVMMTLDLADGRIPVIA-GT 77 (292)
T ss_dssp HHHHHHHTCCEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCEEE-EC
T ss_pred HHHHHHcCCCEEEECccccch-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-ec
Confidence 455677899999988865422 22232211 1223333221 4689985 45
Q ss_pred CCCCCHHHHHHHH---HcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 230 GGVATPADAAMMM---QLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 230 GGI~t~~d~~~~l---~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
|+.++.+-+..+. ++|||++++....|..+++....+-|...
T Consensus 78 g~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~i 122 (292)
T 2ojp_A 78 GANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAI 122 (292)
T ss_dssp CCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHH
Confidence 6654444443333 46999999999999767766555534333
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=90.73 E-value=3 Score=37.43 Aligned_cols=87 Identities=17% Similarity=0.178 Sum_probs=51.0
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 34 v~~li~~Gv~gl~~~GttGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~grvpvia-Gv 83 (297)
T 3flu_A 34 IDWHIENGTDGIVAVGTTGES-------------------ATLSVEEH----------TAVIEAVVKHVAKRVPVIA-GT 83 (297)
T ss_dssp HHHHHHTTCCEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCEEE-EC
T ss_pred HHHHHHcCCCEEEeCccccCc-------------------ccCCHHHH----------HHHHHHHHHHhCCCCcEEE-eC
Confidence 445678899999988865422 22232211 1223333222 4699985 45
Q ss_pred CCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 230 GGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 230 GGI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
|+.++.+.+. .+.++|||++++....+..++.....+-|
T Consensus 84 g~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f 125 (297)
T 3flu_A 84 GANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHF 125 (297)
T ss_dssp CCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHH
Confidence 5554443333 23368999999999998766665554433
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.73 E-value=2.4 Score=37.97 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=51.7
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 27 v~~li~~Gv~gl~~~GttGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~grvpvia-Gv 76 (294)
T 2ehh_A 27 IEFHVDNGTDAILVCGTTGES-------------------PTLTFEEH----------EKVIEFAVKRAAGRIKVIA-GT 76 (294)
T ss_dssp HHHHHTTTCCEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSEEEE-EC
T ss_pred HHHHHHCCCCEEEECccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-ec
Confidence 445667899999988865422 22232211 1223333221 4689985 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
|+.++.+-+.. +.++|||++++....|..+++....+-|.
T Consensus 77 g~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~ 119 (294)
T 2ehh_A 77 GGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFK 119 (294)
T ss_dssp CCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHH
Confidence 66544444332 33579999999999997666655554333
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=90.68 E-value=2.4 Score=38.25 Aligned_cols=89 Identities=22% Similarity=0.354 Sum_probs=52.1
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 39 v~~li~~Gv~gl~v~GtTGE~-------------------~~Ls~eEr----------~~vi~~~~~~~~grvpVia-Gv 88 (306)
T 1o5k_A 39 VRYQLENGVNALIVLGTTGES-------------------PTVNEDER----------EKLVSRTLEIVDGKIPVIV-GA 88 (306)
T ss_dssp HHHHHHTTCCEEEESSGGGTG-------------------GGCCHHHH----------HHHHHHHHHHHTTSSCEEE-EC
T ss_pred HHHHHHcCCCEEEeCccccch-------------------hhCCHHHH----------HHHHHHHHHHhCCCCeEEE-cC
Confidence 455677899999888764422 22232211 1223333221 4699985 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
|+.++.+.+.. +.++|||++++....|..+++....+-|..
T Consensus 89 g~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ 132 (306)
T 1o5k_A 89 GTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKY 132 (306)
T ss_dssp CCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 66544443332 335799999999999976776555553433
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=90.66 E-value=1.6 Score=39.77 Aligned_cols=119 Identities=17% Similarity=0.051 Sum_probs=64.0
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccCCCCCCCCHHHHHHHHhhc----CcceeeccccC---------cHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQGGVARMSDPQLIKEIKQSV----TIPVMAKARIG---------HFVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~G~~~~~~~~~i~~i~~~~----~iPv~vk~~~~---------~~~~a~~~ 110 (310)
+.++.++++|+.++ .|+.+ ++.....+|.......+.+.+|+... ..++.+.-|.. ..++++.+
T Consensus 120 ~tv~~l~~aGaagv-~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay 198 (318)
T 1zlp_A 120 RFIRELISAGAKGV-FLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRRANLY 198 (318)
T ss_dssp HHHHHHHHTTCCEE-EEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEE-EECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHH
Confidence 56888999999997 77633 22222222332333334555554322 33444443322 13567889
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecC-----CHHHHHHHHHhCCCEEEEcC
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR-----NLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~-----t~~ea~~~~~~Gad~V~v~g 167 (310)
.++|||.|......+..++.+..+. ..+|+++-+. ..-....+.++|+..|....
T Consensus 199 ~eAGAd~i~~e~~~~~e~~~~i~~~--l~~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~~ 258 (318)
T 1zlp_A 199 KEAGADATFVEAPANVDELKEVSAK--TKGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHSL 258 (318)
T ss_dssp HHTTCSEEEECCCCSHHHHHHHHHH--SCSEEEEEECTTSSSCCCCHHHHHHHTCCEEEECS
T ss_pred HHcCCCEEEEcCCCCHHHHHHHHHh--cCCCEEEEeccCCCCCCCCHHHHHHcCCeEEEEch
Confidence 9999999974443233444444443 3355533221 11124556788999887643
|
| >1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=90.65 E-value=0.76 Score=40.60 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=30.4
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCC
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~ 259 (310)
+++|++ +|+| +++|+.+++ ..+.||++||++-++++
T Consensus 206 ~vrIlY--GGSV-~~~N~~~l~~~~diDG~LVGgASLka~ 242 (255)
T 1b9b_A 206 SIRILY--GGSI-KPDNFLGLIVQKDIDGGLVGGASLKES 242 (255)
T ss_dssp HSEEEE--ESSC-CHHHHTTTSSSTTCCEEEESGGGTSTH
T ss_pred cceEEE--cCcC-CHHHHHHHHcCCCCCeeEeehHhhcCc
Confidence 478883 6888 689999998 68999999999999854
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=90.64 E-value=1.8 Score=38.13 Aligned_cols=87 Identities=15% Similarity=0.258 Sum_probs=60.3
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc--------CChh
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY--------SDPE 279 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~--------~~~~ 279 (310)
.+.+.+..+++.+++||+. =...+ ++-++.++..+|||+|++--+.+. + ...+.+.+..++. .+.+
T Consensus 88 gs~~dL~~ir~~v~lPvLr-KDfi~-~~~qi~ea~~~GAD~ilLi~a~l~---~-~~l~~l~~~a~~lGl~~lvEv~~~e 161 (251)
T 1i4n_A 88 GDPAFVRAARNLTCRPILA-KDFYI-DTVQVKLASSVGADAILIIARILT---A-EQIKEIYEAAEELGMDSLVEVHSRE 161 (251)
T ss_dssp CCTHHHHHHHTTCCSCEEE-ECCCC-STHHHHHHHHTTCSEEEEEGGGSC---H-HHHHHHHHHHHTTTCEEEEEECSHH
T ss_pred CCHHHHHHHHHhCCCCEEE-eeCCC-CHHHHHHHHHcCCCEEEEecccCC---H-HHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 3466678888888999997 34566 567899999999999998877663 2 4555666666553 1222
Q ss_pred hhhhhhhhc-ccchhcccCccch
Q 021609 280 VLAEVSCGL-GEAMVGLNLSDHK 301 (310)
Q Consensus 280 ~~~~~~~~~-~~~~~~~~~~~~~ 301 (310)
.+ +....+ |..+.|+|.++++
T Consensus 162 E~-~~A~~l~g~~iIGinnr~l~ 183 (251)
T 1i4n_A 162 DL-EKVFSVIRPKIIGINTRDLD 183 (251)
T ss_dssp HH-HHHHTTCCCSEEEEECBCTT
T ss_pred HH-HHHHhcCCCCEEEEeCcccc
Confidence 22 233455 8899999988754
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.62 E-value=2.4 Score=37.95 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=50.8
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 30 v~~li~~Gv~gl~~~GttGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~gr~pvia-Gv 79 (294)
T 3b4u_A 30 ARRCLSNGCDSVTLFGTTGEG-------------------CSVGSRER----------QAILSSFIAAGIAPSRIVT-GV 79 (294)
T ss_dssp HHHHHHTTCSEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHTTCCGGGEEE-EE
T ss_pred HHHHHHcCCCEEEECccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-eC
Confidence 455677899999988865422 22222211 2334444433 3689985 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccC-CCHHHHHH
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKS-GDPVKRAQ 266 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a-~dp~~~a~ 266 (310)
|+.++.+.+.. +.++|||++++....+-. +++....+
T Consensus 80 g~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~ 120 (294)
T 3b4u_A 80 LVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFA 120 (294)
T ss_dssp CCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHH
T ss_pred CCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHH
Confidence 66544433322 235799999999999976 56655444
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=90.59 E-value=1.2 Score=39.77 Aligned_cols=83 Identities=18% Similarity=0.082 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHc--CCCEEE-eCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAI--GIDYVD-ESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~a--Gad~Vi-~~~ 122 (310)
+.|+.+.+.||+.| +++..+...... .+....++.+++.+++|+++... ..+.++.+.++ |++.|- .+.
T Consensus 38 ~~a~~~v~~GAdiI-DIg~~s~~~eE~-----~rv~~vi~~l~~~~~~pisIDT~--~~~v~~aal~a~~Ga~iINdvs~ 109 (271)
T 2yci_X 38 EWARRQAEKGAHYL-DVNTGPTADDPV-----RVMEWLVKTIQEVVDLPCCLDST--NPDAIEAGLKVHRGHAMINSTSA 109 (271)
T ss_dssp HHHHHHHHTTCSEE-EEECCSCSSCHH-----HHHHHHHHHHHHHCCCCEEEECS--CHHHHHHHHHHCCSCCEEEEECS
T ss_pred HHHHHHHHCCCCEE-EEcCCcCchhHH-----HHHHHHHHHHHHhCCCeEEEeCC--CHHHHHHHHHhCCCCCEEEECCC
Confidence 57888999999966 775211110000 01134566677778999998765 44677888888 999994 333
Q ss_pred CCCc--hhHHHHHHhcC
Q 021609 123 VLTP--ADEENHINKHN 137 (310)
Q Consensus 123 ~~~~--~~~~~~i~~~~ 137 (310)
. .. .+....+++++
T Consensus 110 ~-~d~~~~~~~~~a~~~ 125 (271)
T 2yci_X 110 D-QWKMDIFFPMAKKYE 125 (271)
T ss_dssp C-HHHHHHHHHHHHHHT
T ss_pred C-ccccHHHHHHHHHcC
Confidence 2 22 34445554443
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=90.55 E-value=9.3 Score=34.29 Aligned_cols=83 Identities=20% Similarity=0.231 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 37 ~lv~~li~~Gv~gl~v~G-t------TGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad 109 (306)
T 1o5k_A 37 RLVRYQLENGVNALIVLG-T------TGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGAN 109 (306)
T ss_dssp HHHHHHHHTTCCEEEESS-G------GGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEeCc-c------ccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCC
Confidence 467777889999985441 1 1101012111 2333334433 589998765432 3567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHHh
Q 021609 117 YVD-ESEV---LTPADEENHINK 135 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~~ 135 (310)
+++ .+.. .+..++.++.+.
T Consensus 110 avlv~~P~y~~~s~~~l~~~f~~ 132 (306)
T 1o5k_A 110 GVLVVTPYYNKPTQEGLYQHYKY 132 (306)
T ss_dssp EEEEECCCSSCCCHHHHHHHHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHH
Confidence 996 4432 245556655544
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=90.53 E-value=0.18 Score=43.70 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=47.3
Q ss_pred ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh---hcCC
Q 021609 145 GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK---QLGR 221 (310)
Q Consensus 145 ~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~---~~~~ 221 (310)
.+.+.+++..+.+.|+|-|-+-..-..| +.+|++.+++.++ +..+
T Consensus 7 c~~s~~~a~~A~~~GAdRIELc~~L~~G--------------------------------GlTPS~g~i~~~~~~~~~~~ 54 (224)
T 2bdq_A 7 CAENLTDLTRLDKAIISRVELCDNLAVG--------------------------------GTTPSYGVIKEANQYLHEKG 54 (224)
T ss_dssp EEETTTTGGGCCTTTCCEEEEEBCGGGT--------------------------------CBCCCHHHHHHHHHHHHHTT
T ss_pred EECCHHHHHHHHHcCCCEEEEcCCcccC--------------------------------CcCCCHHHHHHHHHhhhhcC
Confidence 4556777888888999987654321100 2345566777676 6667
Q ss_pred CCEEEe--C-CCCC-CCH-------HHHHHHHHcCCCEEEEc
Q 021609 222 LPVVHF--A-AGGV-ATP-------ADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 222 iPVi~i--A-~GGI-~t~-------~d~~~~l~~GadgV~VG 252 (310)
+||.+. . .|+. .|. +|+..+.++|+|||++|
T Consensus 55 ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G 96 (224)
T 2bdq_A 55 ISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVLG 96 (224)
T ss_dssp CEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 887664 2 2332 232 35666677888888888
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.47 E-value=10 Score=34.69 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCCEEE--eCC----CCCchhHHHHHHh-cCCCCcEEEe--cCCHHHH----HHHHHhCCCEEEEcCCCCC
Q 021609 105 VEAQILEAIGIDYVD--ESE----VLTPADEENHINK-HNFRIPFVCG--CRNLGEA----LRRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi--~~~----~~~~~~~~~~i~~-~~~~i~~~v~--~~t~~ea----~~~~~~Gad~V~v~g~~~~ 171 (310)
..++-+.+.|+|+++ ++- .++.+|-.+.++. ..-.++++++ .++.+++ +.+.++|+|.+.+..+.|.
T Consensus 51 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavlv~~P~y~ 130 (344)
T 2hmc_A 51 RKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVERLVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLS 130 (344)
T ss_dssp HHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHHHHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSS
T ss_pred HHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence 445667789999985 322 3555555444443 1223555554 4565554 4456789999887766543
Q ss_pred --cchHHHHHHHHhhcc-c------eEeec----ccChhHHHHh-h--------hccCC--cHHHHHHHhhcC--CCCEE
Q 021609 172 --GNIIEAVRHVRSVMG-D------IRVLR----NMDDDEVFTF-A--------KKIAA--PYDLVMQTKQLG--RLPVV 225 (310)
Q Consensus 172 --~~~~~~~~~~r~~~~-~------~~~l~----~~~~d~~~~~-~--------~~~~~--~~~~i~~i~~~~--~iPVi 225 (310)
..-....++.+.... . +-.+| .++++.+.+. + |+... +...+.++.+.. ++.|+
T Consensus 131 ~~~s~~~l~~~f~~IA~aa~~lPiilYn~P~tg~~l~~e~~~~L~a~~pnIvGiKdssgp~d~~~~~~~~~~~~~~f~v~ 210 (344)
T 2hmc_A 131 RGSVIAAQKAHFKAILSAAPEIPAVIYNSPYYGFATRADLFFALRAEHKNLVGFKEFGGPADMRYAAENITSRDDEVTLM 210 (344)
T ss_dssp STTCHHHHHHHHHHHHHHSTTSCEEEEEBGGGTBCCCHHHHHHHHHHCTTEEEEEECSCHHHHHHHHHHTSCSSSSCEEE
T ss_pred CCCCHHHHHHHHHHHHhhCCCCcEEEEecCccCCCcCHHHHHHHHhcCCCEEEEEcCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 233456666666544 2 33344 2344444333 2 22334 455555554432 23343
Q ss_pred EeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHHHHHH---HhccC
Q 021609 226 HFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAIVRA---VTHYS 276 (310)
Q Consensus 226 ~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a~~l~~~---i~~~~ 276 (310)
.|- -+.+...+ ..|++|++-+.+-+- |.... ++.++ ++++.
T Consensus 211 ----~G~--D~~~l~~l~~~Ga~G~is~~anv~---P~~~~-~l~~a~~~~~~Gd 255 (344)
T 2hmc_A 211 ----IGV--DTAVVHGFVNCGATGAITGIGNVL---PKEVI-HLCKLSQAAAKGD 255 (344)
T ss_dssp ----ECS--GGGHHHHHHHSCCCEEEESGGGTS---HHHHH-HHHHHHHHHTTTC
T ss_pred ----ECc--HHHHHHHHHHcCCCEEEeCHHHhh---HHHHH-HHHHhHHHHhcCc
Confidence 342 24456677 899999999987653 54333 35555 55444
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=90.46 E-value=2.9 Score=37.67 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=52.0
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 42 v~~li~~Gv~gi~v~GttGE~-------------------~~Lt~~Er----------~~v~~~~~~~~~grvpvia-Gv 91 (304)
T 3l21_A 42 ANHLVDQGCDGLVVSGTTGES-------------------PTTTDGEK----------IELLRAVLEAVGDRARVIA-GA 91 (304)
T ss_dssp HHHHHHTTCSEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTTSEEEE-EC
T ss_pred HHHHHHcCCCEEEeCccccch-------------------hhCCHHHH----------HHHHHHHHHHhCCCCeEEE-eC
Confidence 455677899999988865422 12222211 1223333222 4689985 45
Q ss_pred CCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 230 GGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 230 GGI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
|+-++.+-+. .+.++|||++++....|-.+++....+-|..
T Consensus 92 g~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ 135 (304)
T 3l21_A 92 GTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTA 135 (304)
T ss_dssp CCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 5554433332 2235799999999999887776655553433
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=90.46 E-value=2.5 Score=38.31 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=32.1
Q ss_pred CCCCEEEeCCCCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 220 GRLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
.++||++ ..|+.++.+.+. .+.++|||++++....+-.+++....+-|.
T Consensus 91 grvpVia-Gvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~ 142 (314)
T 3qze_A 91 GRIPVIA-GTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFR 142 (314)
T ss_dssp TSSCEEE-ECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHH
T ss_pred CCCcEEE-eCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHH
Confidence 4699985 455554444333 233689999999999887677655554333
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.44 E-value=2.6 Score=38.59 Aligned_cols=89 Identities=12% Similarity=0.138 Sum_probs=52.1
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 61 v~~li~~Gv~Gl~v~GtTGE~-------------------~~Ls~eEr----------~~vi~~~ve~~~grvpVia-Gv 110 (332)
T 2r8w_A 61 IARLDAAEVDSVGILGSTGIY-------------------MYLTREER----------RRAIEAAATILRGRRTLMA-GI 110 (332)
T ss_dssp HHHHHHHTCSEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSEEEE-EE
T ss_pred HHHHHHcCCCEEEECccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-ec
Confidence 455677899999988865422 22232211 1223333222 4689985 45
Q ss_pred CCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 230 GGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 230 GGI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
|+.++.+-+. .+.++|||++++....|..++.....+-|..
T Consensus 111 g~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~ 154 (332)
T 2r8w_A 111 GALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAA 154 (332)
T ss_dssp CCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 6654444332 2335799999999999976666555543333
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=90.30 E-value=3.3 Score=36.95 Aligned_cols=87 Identities=16% Similarity=0.275 Sum_probs=50.8
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 28 v~~li~~Gv~gl~~~GttGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~gr~pvia-Gv 77 (291)
T 3tak_A 28 VEWHIEQGTNSIVAVGTTGEA-------------------STLSMEEH----------TQVIKEIIRVANKRIPIIA-GT 77 (291)
T ss_dssp HHHHHHHTCCEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCEEE-EC
T ss_pred HHHHHHCCCCEEEECcccccc-------------------ccCCHHHH----------HHHHHHHHHHhCCCCeEEE-eC
Confidence 445678899999888865422 12222211 1223333222 4689985 45
Q ss_pred CCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 230 GGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 230 GGI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
|+-++.+.+. .+.++|+|++++....+..++.....+-|
T Consensus 78 g~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f 119 (291)
T 3tak_A 78 GANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHY 119 (291)
T ss_dssp CCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHH
Confidence 5554433333 23367999999999998766665554433
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=90.30 E-value=2.5 Score=37.81 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=50.5
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 29 v~~li~~Gv~gl~v~GttGE~-------------------~~Lt~~Er----------~~v~~~~~~~~~grvpvia-Gv 78 (292)
T 3daq_A 29 VNFLLENNAQAIIVNGTTAES-------------------PTLTTDEK----------ELILKTVIDLVDKRVPVIA-GT 78 (292)
T ss_dssp HHHHHHTTCCEEEESSGGGTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCEEE-EC
T ss_pred HHHHHHcCCCEEEECcccccc-------------------ccCCHHHH----------HHHHHHHHHHhCCCCcEEE-eC
Confidence 455678899999988764422 22232211 1223323222 4799985 44
Q ss_pred CCCCCHHHHHH----HHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 230 GGVATPADAAM----MMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 230 GGI~t~~d~~~----~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
|+-+ .++..+ +.++|||++++....+..++.....+-|
T Consensus 79 g~~~-t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f 120 (292)
T 3daq_A 79 GTND-TEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHF 120 (292)
T ss_dssp CCSC-HHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHH
T ss_pred Cccc-HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHH
Confidence 5554 444333 3357999999999988766665554433
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=0.82 Score=42.55 Aligned_cols=73 Identities=21% Similarity=0.233 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+.+++.|+.++++|+++| .+..... +.. .......+.+.++++.+ ++||++...+....++..+.+.|||.|.
T Consensus 237 v~~~e~a~~a~~~Gad~I-~vs~~gg--r~~--~~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~ 311 (368)
T 2nli_A 237 IQHPEDADMAIKRGASGI-WVSNHGA--RQL--YEAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVA 311 (368)
T ss_dssp ECSHHHHHHHHHTTCSEE-EECCGGG--TSC--SSCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEE
T ss_pred CCCHHHHHHHHHcCCCEE-EEcCCCc--CCC--CCCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 467899999999999998 3320000 000 00123457888888777 6999998877777888888889999995
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=2.9 Score=38.44 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=52.2
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 58 v~~li~~Gv~Gl~v~GtTGE~-------------------~~Ls~eEr----------~~vi~~~ve~~~grvpVia-Gv 107 (343)
T 2v9d_A 58 IDDLIKAGVDGLFFLGSGGEF-------------------SQLGAEER----------KAIARFAIDHVDRRVPVLI-GT 107 (343)
T ss_dssp HHHHHHTTCSCEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCEEE-EC
T ss_pred HHHHHHcCCCEEEeCccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-ec
Confidence 455677899999888865422 22232211 1223333222 4689985 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
|+.++.+-+.. +.++|||++++....|..+++....+-|..
T Consensus 108 g~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~ 151 (343)
T 2v9d_A 108 GGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQ 151 (343)
T ss_dssp CSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 66544443332 335799999999999976776655553433
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.85 Score=41.94 Aligned_cols=71 Identities=20% Similarity=0.078 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCcEEEec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC-CCEEE
Q 021609 46 EQARVAEEAGACAVMAL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG-IDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG-ad~Vi 119 (310)
++++.++++|++.| ++ +..........+ ...+.+.++++++.+++||++...+...++++.+++.| ||.|.
T Consensus 233 ~la~~L~~~Gvd~i-~vs~g~~~~~~~~~~--~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V~ 305 (340)
T 3gr7_A 233 PYAKRMKEQGVDLV-DVSSGAIVPARMNVY--PGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLVF 305 (340)
T ss_dssp HHHHHHHHTTCCEE-EEECCCSSCCCCCCC--TTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHcCCCEE-EEecCCccCCCCCCC--ccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEEE
Confidence 68999999999987 43 211000000000 11246788999999999999988877778898899988 99995
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=90.08 E-value=10 Score=33.98 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 36 ~lv~~li~~Gv~Gl~v~G-t------TGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad 108 (303)
T 2wkj_A 36 RLVQFNIQQGIDGLYVGG-S------TGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFD 108 (303)
T ss_dssp HHHHHHHHTTCSEEEESS-T------TTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEECe-e------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCC
Confidence 467777899999985441 1 1101012111 2333334433 589998765432 3567788889999
Q ss_pred EEE-eCCC---CCchhHHHHHH
Q 021609 117 YVD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~---~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 109 avlv~~P~y~~~s~~~l~~~f~ 130 (303)
T 2wkj_A 109 AVSAVTPFYYPFSFEEHCDHYR 130 (303)
T ss_dssp EEEEECCCSSCCCHHHHHHHHH
T ss_pred EEEecCCCCCCCCHHHHHHHHH
Confidence 996 4432 23445554443
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=2.3 Score=38.01 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=51.0
Q ss_pred HHHHHH-hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeC
Q 021609 152 ALRRIR-EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFA 228 (310)
Q Consensus 152 a~~~~~-~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA 228 (310)
+....+ .|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ .
T Consensus 30 v~~li~~~Gv~gl~~~GttGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~grvpvia-G 79 (293)
T 1f6k_A 30 IRHNIDKMKVDGLYVGGSTGEN-------------------FMLSTEEK----------KEIFRIAKDEAKDQIALIA-Q 79 (293)
T ss_dssp HHHHHHTSCCSEEEESSGGGTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSEEEE-E
T ss_pred HHHHHhhCCCcEEEeCccccch-------------------hhCCHHHH----------HHHHHHHHHHhCCCCeEEE-e
Confidence 455678 899999888764321 22232211 1223333221 4689985 4
Q ss_pred CCCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 229 AGGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 229 ~GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.|+.++.+-+.. +.++|||++++....|..++.....+-|
T Consensus 80 vg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f 122 (293)
T 1f6k_A 80 VGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYY 122 (293)
T ss_dssp CCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHH
Confidence 566544443322 3357999999999999766665554433
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=89.99 E-value=0.63 Score=43.38 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=51.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccc--------cccCCCC---C-CCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADI--------RSQGGVA---R-MSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~--------~~~~G~~---~-~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~ 111 (310)
+.|+.++++|+++|+..|...... ...+|-+ . ....+.++++++.+ ++||+....+...+++..+.
T Consensus 238 ~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s~~da~~~l 317 (367)
T 3zwt_A 238 DIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSSGQDALEKI 317 (367)
T ss_dssp HHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCCHHHHHHHH
Confidence 578899999999996555211000 0111111 0 01247888899988 89999988887778998888
Q ss_pred HcCCCEEE
Q 021609 112 AIGIDYVD 119 (310)
Q Consensus 112 ~aGad~Vi 119 (310)
++|||.|-
T Consensus 318 ~~GAd~V~ 325 (367)
T 3zwt_A 318 RAGASLVQ 325 (367)
T ss_dssp HHTCSEEE
T ss_pred HcCCCEEE
Confidence 99999994
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=89.88 E-value=2.9 Score=37.93 Aligned_cols=87 Identities=18% Similarity=0.259 Sum_probs=51.2
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 49 i~~li~~Gv~Gl~v~GtTGE~-------------------~~Ls~~Er----------~~v~~~~v~~~~grvpVia-Gv 98 (315)
T 3si9_A 49 VEWQITQGINGVSPVGTTGES-------------------PTLTHEEH----------KRIIELCVEQVAKRVPVVA-GA 98 (315)
T ss_dssp HHHHHHTTCSEEECSSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCBEE-EC
T ss_pred HHHHHHcCCCEEEeCccccCc-------------------cccCHHHH----------HHHHHHHHHHhCCCCcEEE-eC
Confidence 445678899999888765422 22232211 1223333222 4689985 45
Q ss_pred CCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 230 GGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 230 GGI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
|+-++.+.+. .+.++|||++++....|..+++....+-|
T Consensus 99 g~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f 140 (315)
T 3si9_A 99 GSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHF 140 (315)
T ss_dssp CCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHH
Confidence 5554443333 23368999999999998767665555433
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=89.73 E-value=1 Score=41.09 Aligned_cols=91 Identities=15% Similarity=0.099 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCC--C-CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGV--A-RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~--~-~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
+.|+.+.+.||+.| +++...+......=+ - ..+....++.+++.+++|+.+..+ ..+.++.+.++|++.|- .+
T Consensus 37 ~~a~~~v~~GAdII-DIGgeSTrPGa~~v~~~eE~~Rv~pvI~~l~~~~~vpiSIDT~--~~~Va~aAl~aGa~iINDVs 113 (314)
T 2vef_A 37 QQARKLIAEGASML-DIGGESTRPGSSYVEIEEEIQRVVPVIKAIRKESDVLISIDTW--KSQVAEAALAAGADLVNDIT 113 (314)
T ss_dssp HHHHHHHHTTCSEE-EEECCC-----CHHHHHHHHHHHHHHHHHHHHHCCCEEEEECS--CHHHHHHHHHTTCCEEEETT
T ss_pred HHHHHHHHCCCCEE-EECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhhCCceEEEeCC--CHHHHHHHHHcCCCEEEECC
Confidence 56889999999965 775221111000000 0 001123445566667899998665 34778999999999994 33
Q ss_pred CCCCchhHHHHHHhcCCC
Q 021609 122 EVLTPADEENHINKHNFR 139 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~ 139 (310)
.....+++.+.+.+++..
T Consensus 114 g~~~d~~m~~v~a~~~~~ 131 (314)
T 2vef_A 114 GLMGDEKMPHVVAEARAQ 131 (314)
T ss_dssp TTCSCTTHHHHHHHHTCE
T ss_pred CCCCChHHHHHHHHcCCC
Confidence 322224555555554433
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=89.67 E-value=2.6 Score=37.88 Aligned_cols=49 Identities=24% Similarity=0.342 Sum_probs=32.2
Q ss_pred CCCCEEEeCCCCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 220 GRLPVVHFAAGGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
.++||++ ..|+.++.+-+.. +.++|||++++....|..++.....+-|.
T Consensus 68 grvpvia-Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~ 119 (297)
T 2rfg_A 68 GRVPVIA-GAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFK 119 (297)
T ss_dssp TSSCBEE-ECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHH
T ss_pred CCCeEEE-ccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHH
Confidence 4689985 4566544443322 33579999999999997666655554333
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.64 E-value=2.3 Score=38.08 Aligned_cols=87 Identities=25% Similarity=0.331 Sum_probs=51.3
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 27 v~~li~~Gv~gl~~~GttGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~gr~pvia-Gv 76 (292)
T 2vc6_A 27 VEWQIEEGSFGLVPCGTTGES-------------------PTLSKSEH----------EQVVEITIKTANGRVPVIA-GA 76 (292)
T ss_dssp HHHHHHTTCSEEETTSGGGTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCBEE-EC
T ss_pred HHHHHHcCCCEEEECccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-ec
Confidence 455677899999888764322 22232211 1223333222 4689985 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
|+-++.+-+.. +.++|||++++....+..+++....+-|
T Consensus 77 g~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f 118 (292)
T 2vc6_A 77 GSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHF 118 (292)
T ss_dssp CCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHH
Confidence 66554443333 3357999999999999767666555433
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=3.3 Score=37.19 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=51.8
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--C-CCCEEEeC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--G-RLPVVHFA 228 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~-~iPVi~iA 228 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. . ++||++ .
T Consensus 34 v~~li~~Gv~gl~v~GttGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~g~rvpvia-G 83 (301)
T 3m5v_A 34 IKRQIENGIDAVVPVGTTGES-------------------ATLTHEEH----------RTCIEIAVETCKGTKVKVLA-G 83 (301)
T ss_dssp HHHHHHTTCCEEECSSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCEEEE-E
T ss_pred HHHHHHcCCCEEEECccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCCeEEE-e
Confidence 455678899999988765422 22222211 1223333222 3 689985 4
Q ss_pred CCCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 229 AGGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 229 ~GGI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
.|+-++.+.+. .+.++|||++++....+-.+++....+-|..
T Consensus 84 vg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ 128 (301)
T 3m5v_A 84 AGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKA 128 (301)
T ss_dssp CCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHH
Confidence 55554443333 2335799999999999876766555543333
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=0.7 Score=43.19 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+.+++.|+.+.++|+++|+.-|... +...+ ...+.+.+.++++.++.||++...+...+++..+.++|||+|.
T Consensus 233 v~t~e~a~~a~~aGad~I~vs~~gg---~~~d~--~~~~~~~l~~v~~~~~~pVia~GGI~~~~dv~kal~~GAdaV~ 305 (380)
T 1p4c_A 233 LLSAEDADRCIAEGADGVILSNHGG---RQLDC--AISPMEVLAQSVAKTGKPVLIDSGFRRGSDIVKALALGAEAVL 305 (380)
T ss_dssp ECCHHHHHHHHHTTCSEEEECCGGG---TSCTT--CCCGGGTHHHHHHHHCSCEEECSSCCSHHHHHHHHHTTCSCEE
T ss_pred cCcHHHHHHHHHcCCCEEEEcCCCC---CcCCC--CcCHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHHHhCCcHhh
Confidence 5678999999999999983212000 00000 1234678888888888899998877777788888889999995
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.31 E-value=2.9 Score=37.91 Aligned_cols=89 Identities=21% Similarity=0.234 Sum_probs=51.7
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 51 v~~li~~Gv~Gi~v~GtTGE~-------------------~~Ls~~Er----------~~v~~~~v~~~~grvpVia-Gv 100 (315)
T 3na8_A 51 IERLIDGGVHAIAPLGSTGEG-------------------AYLSDPEW----------DEVVDFTLKTVAHRVPTIV-SV 100 (315)
T ss_dssp HHHHHHTTCSEEECSSGGGTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCBEE-EC
T ss_pred HHHHHHcCCCEEEECccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-ec
Confidence 445678899999888764321 22232211 2233333222 4699985 44
Q ss_pred CCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 230 GGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 230 GGI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
|+-++.+.+. .+.++|||++++....|-.+++....+-|..
T Consensus 101 g~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ 144 (315)
T 3na8_A 101 SDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRA 144 (315)
T ss_dssp CCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 5554433333 2336899999999999887776655543333
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=89.13 E-value=2 Score=38.29 Aligned_cols=115 Identities=14% Similarity=0.148 Sum_probs=58.3
Q ss_pred HHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHhhc-Ccceeecccc----C----c----HHHHHHHHH
Q 021609 47 QARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQSV-TIPVMAKARI----G----H----FVEAQILEA 112 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~~~-~iPv~vk~~~----~----~----~~~a~~~~~ 112 (310)
.++.+.+.|+|.+ ++. .+.+..... ....+.+..+++.+ ++|+++-.|. | . .+..+.+.+
T Consensus 57 ~~~~~~~~gaD~V-ElR-----vD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~ll~~~l~ 130 (276)
T 3o1n_A 57 EALAYREADFDIL-EWR-----VDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVD 130 (276)
T ss_dssp HHHHHTTSCCSEE-EEE-----GGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCEE-EEE-----eccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCCCCCHHHHHHHHHHHHh
Confidence 3445556899977 542 111110000 00134556667776 8999985443 1 1 233455566
Q ss_pred cC-CCEEEeCCCCCchhHHHHHHh-cCCCCcEEEecCCH------HHH----HHHHHhCCCEEEEcC
Q 021609 113 IG-IDYVDESEVLTPADEENHINK-HNFRIPFVCGCRNL------GEA----LRRIREGAAMIRTKG 167 (310)
Q Consensus 113 aG-ad~Vi~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~------~ea----~~~~~~Gad~V~v~g 167 (310)
.| +|+|..-.......+.+.++. +..+..++++.|++ ++. .++.+.|||++++-.
T Consensus 131 ~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~GaDIvKia~ 197 (276)
T 3o1n_A 131 SGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAV 197 (276)
T ss_dssp HTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred cCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 78 999953222222222333321 23456666665532 232 234467999988653
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=89.08 E-value=2 Score=38.97 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=31.9
Q ss_pred CCCCEEEeCCCCCCCHHHHHHH---HHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 220 GRLPVVHFAAGGVATPADAAMM---MQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~---l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
.++||++ ..|+ ++.+.+..+ .++|||++++....|..+++....+-|
T Consensus 80 grvpVia-Gvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f 129 (314)
T 3d0c_A 80 GRATVVA-GIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYY 129 (314)
T ss_dssp TSSEEEE-EECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHH
T ss_pred CCCeEEe-cCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHH
Confidence 4689985 4566 554444333 357999999999999767765555433
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=89.07 E-value=4.4 Score=37.58 Aligned_cols=43 Identities=9% Similarity=-0.071 Sum_probs=36.1
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEcc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGS 253 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGs 253 (310)
+++..+++++.+++||+ +.+.+.+++++.++++.| +|.|++--
T Consensus 247 d~~~~~~l~~~~~iPI~--~dE~~~~~~~~~~~i~~~~~d~v~ik~ 290 (388)
T 2nql_A 247 DIAGLEKVSKNTDVPIA--VGEEWRTHWDMRARIERCRIAIVQPEM 290 (388)
T ss_dssp CHHHHHHHHTSCCSCEE--ECTTCCSHHHHHHHHTTSCCSEECCCH
T ss_pred hHHHHHHHHhhCCCCEE--EeCCcCCHHHHHHHHHcCCCCEEEecC
Confidence 46778888888899998 789999999999999765 88888743
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=88.89 E-value=13 Score=33.54 Aligned_cols=195 Identities=18% Similarity=0.149 Sum_probs=112.8
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGI 115 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGa 115 (310)
++.+.+. .+++++.+..-|+++.+. ..+ +.|. ......++...+ .++||.+..--+ .++.+..+.++|.
T Consensus 23 Nv~n~e~~~Ail~AAee~~sPvIlq~s~g--~~~-y~g~--~~~~~~v~~~a~-~~VPValHlDHg~~~e~~~~ai~~GF 96 (305)
T 1rvg_A 23 NVNNMEFLQAVLEAAEEQRSPVILALSEG--AMK-YGGR--ALTLMAVELAKE-ARVPVAVHLDHGSSYESVLRALRAGF 96 (305)
T ss_dssp ECCSHHHHHHHHHHHHHTTCCEEEEEEHH--HHH-HHHH--HHHHHHHHHHHH-CSSCEEEEEEEECSHHHHHHHHHTTC
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECChh--HHh-hCCH--HHHHHHHHHHHh-CCCcEEEECCCCCCHHHHHHHHHcCC
Confidence 4555654 445577788876666311 011 1110 001234555556 899999864333 5688899999999
Q ss_pred CEEE--eCCCCCch-------hHHHHHHhcCC------C----CcEE---Ee----cCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 116 DYVD--ESEVLTPA-------DEENHINKHNF------R----IPFV---CG----CRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 116 d~Vi--~~~~~~~~-------~~~~~i~~~~~------~----i~~~---v~----~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
+-|- .+. ++.+ ++.++..+.+. | ..-. .+ .++++++.+-. +.|+|.+.+.-.
T Consensus 97 tSVMiDgS~-~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiG 175 (305)
T 1rvg_A 97 TSVMIDKSH-EDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIG 175 (305)
T ss_dssp SEEEECCTT-SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSS
T ss_pred CeeeeCCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHHHCCCEEEEecC
Confidence 9993 333 2322 33344433321 1 1101 00 26788888866 579998876421
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCC------------------
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAG------------------ 230 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~G------------------ 230 (310)
+--| .++.. ....-+++.++++++..++|++.=.+.
T Consensus 176 t~HG-----------------~Yk~~---------g~p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg~~~ 229 (305)
T 1rvg_A 176 TSHG-----------------AYKGK---------GRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIG 229 (305)
T ss_dssp CCSS-----------------SBCSS---------SSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCC
T ss_pred cccc-----------------ccCCC---------CCCccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhccccc
Confidence 1101 11100 012345788999988888998864555
Q ss_pred ---CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 231 ---GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 231 ---GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
|+ ..+++.++.+.|..=|=+++.+-. ...+.+++.+.+
T Consensus 230 ~~~G~-p~e~i~~ai~~GV~KiNi~Tdl~~-----A~~~~vr~~~~~ 270 (305)
T 1rvg_A 230 EAAGI-HPEDIKKAISLGIAKINTDTDLRL-----AFTALIREALNK 270 (305)
T ss_dssp SCBCC-CHHHHHHHHHTTEEEEEECHHHHH-----HHHHHHHHHHHH
T ss_pred cCCCC-CHHHHHHHHHCCCeEEEEChHHHH-----HHHHHHHHHHHh
Confidence 77 589999999999999999987763 344445555443
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=88.87 E-value=0.62 Score=44.15 Aligned_cols=74 Identities=22% Similarity=0.222 Sum_probs=51.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcc--ccc----ccCC---CCC-CCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHc
Q 021609 46 EQARVAEEAGACAVMALERVPA--DIR----SQGG---VAR-MSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAI 113 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~--~~~----~~~G---~~~-~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~a 113 (310)
++|+.++++|+|+|+..|.... ++. ..+| ... ....+.++++++.+ ++||+....+...+++..+..+
T Consensus 287 ~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iPIIg~GGI~s~eDa~e~l~a 366 (415)
T 3i65_A 287 EIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEA 366 (415)
T ss_dssp HHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEECSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHc
Confidence 6899999999999966662211 110 0121 111 11246888888888 7999998888778899888899
Q ss_pred CCCEEE
Q 021609 114 GIDYVD 119 (310)
Q Consensus 114 Gad~Vi 119 (310)
|||.|-
T Consensus 367 GAd~Vq 372 (415)
T 3i65_A 367 GASVCQ 372 (415)
T ss_dssp TEEEEE
T ss_pred CCCEEE
Confidence 999994
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=88.80 E-value=1.1 Score=40.46 Aligned_cols=83 Identities=11% Similarity=0.118 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHH-------HHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLI-------KEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i-------~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.+.||+.| +++...+.. |.......+.+ +.+++. ++|+.+..+ ..+.++.+.++|++.|
T Consensus 50 ~~a~~~v~~GAdiI-DIGgeSTrP----ga~~v~~~eE~~Rv~pvi~~l~~~-~vpiSIDT~--~~~Va~aAl~aGa~iI 121 (294)
T 2y5s_A 50 RRAERMIAEGADLL-DIGGESTRP----GAPPVPLDEELARVIPLVEALRPL-NVPLSIDTY--KPAVMRAALAAGADLI 121 (294)
T ss_dssp HHHHHHHHTTCSEE-EEESSCCST----TCCCCCHHHHHHHHHHHHHHHGGG-CSCEEEECC--CHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHCCCCEE-EECCCcCCC----CCCCCCHHHHHHHHHHHHHHHhhC-CCeEEEECC--CHHHHHHHHHcCCCEE
Confidence 57889999999965 776222111 11111112333 333443 899988665 3477889999999999
Q ss_pred E-eCCCCCchhHHHHHHhcC
Q 021609 119 D-ESEVLTPADEENHINKHN 137 (310)
Q Consensus 119 i-~~~~~~~~~~~~~i~~~~ 137 (310)
- .+.. ..++..+.+++++
T Consensus 122 NdVsg~-~d~~m~~~~a~~~ 140 (294)
T 2y5s_A 122 NDIWGF-RQPGAIDAVRDGN 140 (294)
T ss_dssp EETTTT-CSTTHHHHHSSSS
T ss_pred EECCCC-CchHHHHHHHHhC
Confidence 4 3332 2445666655443
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=88.77 E-value=3.9 Score=36.91 Aligned_cols=85 Identities=20% Similarity=0.099 Sum_probs=48.8
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 35 v~~li~~Gv~gl~v~GtTGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~grvpvia-Gv 84 (309)
T 3fkr_A 35 VDFMIDAGSDGLCILANFSEQ-------------------FAITDDER----------DVLTRTILEHVAGRVPVIV-TT 84 (309)
T ss_dssp HHHHHHTTCSCEEESSGGGTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCEEE-EC
T ss_pred HHHHHHcCCCEEEECccccCc-------------------ccCCHHHH----------HHHHHHHHHHhCCCCcEEE-ec
Confidence 445678899999888764421 22232211 1223333222 4799985 45
Q ss_pred CCCCCHHHHH---HHHHcCCCEEEEccccc---cCCCHHHHHH
Q 021609 230 GGVATPADAA---MMMQLGCDGVFVGSGVF---KSGDPVKRAQ 266 (310)
Q Consensus 230 GGI~t~~d~~---~~l~~GadgV~VGsai~---~a~dp~~~a~ 266 (310)
|+.++.+-+. .+.++|||++++....+ ..++.....+
T Consensus 85 g~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~ 127 (309)
T 3fkr_A 85 SHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFE 127 (309)
T ss_dssp CCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHH
Confidence 6654444333 23357999999999987 3345555444
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=88.72 E-value=2.7 Score=36.82 Aligned_cols=114 Identities=20% Similarity=0.175 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc---------cCc--HHHH-HHH
Q 021609 45 PEQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR---------IGH--FVEA-QIL 110 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~---------~~~--~~~a-~~~ 110 (310)
.+.++.+.++|++.+ ++++ ..+.. .. .......+.+.++.+++|+++... ... .+.+ +.+
T Consensus 102 ~~~v~~a~~~Ga~~v~~~l~~~~~~~-~~-----~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a 175 (273)
T 2qjg_A 102 VTTVEEAIRMGADAVSIHVNVGSDED-WE-----AYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLG 175 (273)
T ss_dssp CSCHHHHHHTTCSEEEEEEEETSTTH-HH-----HHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEecCCCCH-HH-----HHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHH
Confidence 467888889999987 3443 11000 00 000122333334456899887531 111 1233 778
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEE--ecC--CHHH----HHHHHHhCCCEEEEc
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHNFRIPFVC--GCR--NLGE----ALRRIREGAAMIRTK 166 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v--~~~--t~~e----a~~~~~~Gad~V~v~ 166 (310)
.++|+|+|.......+..+.+..+. .++++++ +++ +.++ +..+.+.|++.+.+.
T Consensus 176 ~~~Gad~i~~~~~~~~~~l~~i~~~--~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg 237 (273)
T 2qjg_A 176 AELGADIVKTSYTGDIDSFRDVVKG--CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVG 237 (273)
T ss_dssp HHTTCSEEEECCCSSHHHHHHHHHH--CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECC
T ss_pred HHcCCCEEEECCCCCHHHHHHHHHh--CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEee
Confidence 8999999854433333333333322 2445443 355 4666 444557899988763
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.70 E-value=13 Score=33.42 Aligned_cols=163 Identities=14% Similarity=0.074 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCCEEE--eCC----CCCchhH---HHHHHhc-CCCCcEEEec-CCHHHH----HHHHHhCCCEEEEcCCC
Q 021609 105 VEAQILEAIGIDYVD--ESE----VLTPADE---ENHINKH-NFRIPFVCGC-RNLGEA----LRRIREGAAMIRTKGEA 169 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi--~~~----~~~~~~~---~~~i~~~-~~~i~~~v~~-~t~~ea----~~~~~~Gad~V~v~g~~ 169 (310)
..++-+.+.|+|+++ ++- .++.+|- .+...+. .-.+++++++ .+.+++ +.+.++|+|.+.+..+.
T Consensus 37 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~~t~~ai~la~~A~~~Gadavlv~~P~ 116 (316)
T 3e96_A 37 ETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGYATSTAIELGNAAKAAGADAVMIHMPI 116 (316)
T ss_dssp HHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHHTCSEEEECCCC
T ss_pred HHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCcCHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 445667789999995 322 2444433 3333332 2235555542 355554 44567899998876554
Q ss_pred C-CcchHHHHHHHHhhccc----eEeec---ccChhHHHHhh--------hccCCcHHHHHHHhhcC---CCC-EEEeCC
Q 021609 170 G-TGNIIEAVRHVRSVMGD----IRVLR---NMDDDEVFTFA--------KKIAAPYDLVMQTKQLG---RLP-VVHFAA 229 (310)
Q Consensus 170 ~-~~~~~~~~~~~r~~~~~----~~~l~---~~~~d~~~~~~--------~~~~~~~~~i~~i~~~~---~iP-Vi~iA~ 229 (310)
+ ..+-....++.+..... +-++. .++++.+.+.+ |+...+...+.++.+.. +.. ++
T Consensus 117 y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La~~pnIvgiKdssgd~~~~~~~~~~~~~~~f~~v~---- 192 (316)
T 3e96_A 117 HPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLAPLQNLVGVKYAINDLPRFAKVVRSIPEEHQIAWI---- 192 (316)
T ss_dssp CSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHTTCTTEEEEEECCCCHHHHHHHHTTSCGGGCCEEE----
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHhcCCCCceEEE----
Confidence 3 22323555666554332 33333 34554443322 33344555555555432 233 43
Q ss_pred CCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 230 GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.|- +..-+..++..|++|++-+.+-+- |.... ++.++++++.
T Consensus 193 ~G~-d~~~~~~~l~~G~~G~is~~an~~---P~~~~-~l~~a~~~Gd 234 (316)
T 3e96_A 193 CGT-AEKWAPFFWHAGAKGFTSGLVNLL---PQKAV-EMLEALRNND 234 (316)
T ss_dssp ETT-CTTTHHHHHHHTCCEEEESGGGTC---HHHHH-HHHHHHHTTC
T ss_pred eCC-hHHHHHHHHHCCCCEEEechhhhh---HHHHH-HHHHHHHcCC
Confidence 343 112244557889999999887663 54433 3666665543
|
| >1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=88.65 E-value=4.8 Score=30.43 Aligned_cols=61 Identities=15% Similarity=0.235 Sum_probs=41.8
Q ss_pred HHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 210 YDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 210 ~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
+++++.+++. .++|++++ .+-.+.+...++++.|+++++ .+.-++....+.+...++.+..
T Consensus 78 ~~~~~~l~~~~~~~~~~ii~~--t~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~i~~~~~~~~~ 141 (149)
T 1k66_A 78 REVLQEIKQDEVLKKIPVVIM--TTSSNPKDIEICYSYSISSYI-----VKPLEIDRLTETVQTFIKYWLD 141 (149)
T ss_dssp HHHHHHHTTSTTGGGSCEEEE--ESCCCHHHHHHHHHTTCSEEE-----ECCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCeEEEE--eCCCCHHHHHHHHHCCCCEEE-----eCCCCHHHHHHHHHHHHHHhhh
Confidence 5667777664 46899865 444578899999999999986 4444566666656666555443
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=88.49 E-value=4.1 Score=36.31 Aligned_cols=167 Identities=10% Similarity=0.025 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEe---C
Q 021609 46 EQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE---S 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~---~ 121 (310)
+.++++.+.|.+.| ..- +.. .+.... +....+.++.+++..++|+.+-. ...+.++.+.++|++.|-. .
T Consensus 30 ~i~~~L~~~Gv~~I-E~g~~~~--~~~~p~--~~~~~e~~~~i~~~~~~~v~~l~--~n~~~i~~a~~~G~~~V~i~~~~ 102 (295)
T 1ydn_A 30 ALINRLSDCGYARI-EATSFVS--PKWVPQ--LADSREVMAGIRRADGVRYSVLV--PNMKGYEAAAAAHADEIAVFISA 102 (295)
T ss_dssp HHHHHHTTTTCSEE-EEEECSC--TTTCGG--GTTHHHHHHHSCCCSSSEEEEEC--SSHHHHHHHHHTTCSEEEEEEES
T ss_pred HHHHHHHHcCcCEE-EEccCcC--cccccc--ccCHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHCCCCEEEEEEec
Confidence 46888889999976 331 110 010000 01123555666554467775544 2357788999999999831 2
Q ss_pred C--------CCCch-------hHHHHHHhcCCCCcEEE---------ecCCHHHHHHH----HHhCCCEEEEcCCCCCcc
Q 021609 122 E--------VLTPA-------DEENHINKHNFRIPFVC---------GCRNLGEALRR----IREGAAMIRTKGEAGTGN 173 (310)
Q Consensus 122 ~--------~~~~~-------~~~~~i~~~~~~i~~~v---------~~~t~~ea~~~----~~~Gad~V~v~g~~~~~~ 173 (310)
+ ..+.. +.++.+++.+..+...+ +-.+++++.+. .+.|+|.+.+.-..+..
T Consensus 103 S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~~- 181 (295)
T 1ydn_A 103 SEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGRG- 181 (295)
T ss_dssp CHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETTSCC-
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCCCCc-
Confidence 2 12222 22333333333222111 12355555443 35788877654221111
Q ss_pred hHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC-CCEEEeC--CCCCCCHHHHHHHHHcCCCEEE
Q 021609 174 IIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR-LPVVHFA--AGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 174 ~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~-iPVi~iA--~GGI~t~~d~~~~l~~GadgV~ 250 (310)
.|+ ...++++.+++..+ +|+.+=. ..|. ...+..+++++|++-|-
T Consensus 182 ---------------------~P~----------~~~~lv~~l~~~~~~~~l~~H~Hn~~Gl-a~an~l~Ai~aG~~~vd 229 (295)
T 1ydn_A 182 ---------------------TPD----------TVAAMLDAVLAIAPAHSLAGHYHDTGGR-ALDNIRVSLEKGLRVFD 229 (295)
T ss_dssp ---------------------CHH----------HHHHHHHHHHTTSCGGGEEEEEBCTTSC-HHHHHHHHHHHTCCEEE
T ss_pred ---------------------CHH----------HHHHHHHHHHHhCCCCeEEEEECCCcch-HHHHHHHHHHhCCCEEE
Confidence 111 11456777776654 6765323 5677 46788888999999877
Q ss_pred Ec
Q 021609 251 VG 252 (310)
Q Consensus 251 VG 252 (310)
+.
T Consensus 230 ~s 231 (295)
T 1ydn_A 230 AS 231 (295)
T ss_dssp EB
T ss_pred ec
Confidence 53
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=88.35 E-value=0.77 Score=41.12 Aligned_cols=75 Identities=21% Similarity=0.282 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCcEEEeccCC-----ccccc---------ccCCCCCC-CCHHHHHHHHhhcCcceeeccccCcHHHHHH
Q 021609 45 PEQARVAEEAGACAVMALERV-----PADIR---------SQGGVARM-SDPQLIKEIKQSVTIPVMAKARIGHFVEAQI 109 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~-----~~~~~---------~~~G~~~~-~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~ 109 (310)
.+.++.++++|+++|...|.. ....+ ...|.... ...+.++++++.+++||++...+...+++..
T Consensus 179 ~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~~ipvia~GGI~~~~d~~~ 258 (311)
T 1ep3_A 179 VPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVLE 258 (311)
T ss_dssp HHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHH
Confidence 467999999999998332200 00000 00111000 0136788888889999999888777788888
Q ss_pred HHHcCCCEEE
Q 021609 110 LEAIGIDYVD 119 (310)
Q Consensus 110 ~~~aGad~Vi 119 (310)
+.++|||.|.
T Consensus 259 ~l~~GAd~V~ 268 (311)
T 1ep3_A 259 MYMAGASAVA 268 (311)
T ss_dssp HHHHTCSEEE
T ss_pred HHHcCCCEEE
Confidence 8889999995
|
| >3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.33 E-value=14 Score=35.17 Aligned_cols=81 Identities=12% Similarity=-0.025 Sum_probs=52.2
Q ss_pred HHHHHHHhhcC-CCC-EEEeCCC--CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhh
Q 021609 210 YDLVMQTKQLG-RLP-VVHFAAG--GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVS 285 (310)
Q Consensus 210 ~~~i~~i~~~~-~iP-Vi~iA~G--GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~ 285 (310)
++.++.+++.. +.| ++.=+.+ |+ +.+++.++.+.|..-+=||+.++-+ -......|...=++...+.....+.
T Consensus 244 ~e~~~~L~~~v~~~P~LVlhghStDy~-~~e~l~~~V~~GiaklNVgp~Lt~a--~reAl~aL~~ie~~l~~~~~~s~l~ 320 (450)
T 3txv_A 244 RARAEKLSATLGQLHGMVFEAHSTDYQ-TPDALRELVADGFAILKVGPGLTFA--LREALYGLDQIAAFLFPAARERTLA 320 (450)
T ss_dssp TTTTSHHHHGGGTSTTCEEEESCCTTC-CHHHHHHHHHTTEEEEEECHHHHHH--HHHHHHHHHHHHHHHCTTSCSSCHH
T ss_pred HHHHHHHHHHhccCCCEEEecCCCCCC-CHHHHHHHHHcCCcEEEEChHHHHH--HHHHHHHHHHHHHHHcccCCcccHH
Confidence 44556666655 678 6632344 55 7899999999999999999999852 1223333333333344445556778
Q ss_pred hhcccchh
Q 021609 286 CGLGEAMV 293 (310)
Q Consensus 286 ~~~~~~~~ 293 (310)
+.+.+.|.
T Consensus 321 ~~l~~~m~ 328 (450)
T 3txv_A 321 EVTEAVMR 328 (450)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887775
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=88.29 E-value=1.6 Score=37.51 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.++.++++|+|+| ..+. . ...+| .+.+.++.+++.+ ++||++...+...+++..+.++|||.|
T Consensus 136 ~~a~~a~eaGad~I-~tst---g-~~~gg----a~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~i 201 (225)
T 1mzh_A 136 KAVEICIEAGADFI-KTST---G-FAPRG----TTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI 201 (225)
T ss_dssp HHHHHHHHHTCSEE-ECCC---S-CSSSC----CCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHhCCCEE-EECC---C-CCCCC----CCHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHH
Confidence 56888899999987 4321 0 00122 2478889998876 799999877777788888889999976
|
| >2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7 | Back alignment and structure |
|---|
Probab=88.27 E-value=5.8 Score=37.51 Aligned_cols=49 Identities=10% Similarity=-0.143 Sum_probs=38.0
Q ss_pred CcHHHHHHHhhcCCCC-EEE--eCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 208 APYDLVMQTKQLGRLP-VVH--FAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iP-Vi~--iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.+++.+++|++.+++| ++. =.+.|+ +.+++.++.+.|..-+=||+.+..
T Consensus 235 ld~e~l~~I~~~v~~P~LVle~HGgSg~-~~e~l~~~v~~Gi~kiNV~t~l~~ 286 (420)
T 2fiq_A 235 YQPQEAQALAQWIENTRMVYEAHSTDYQ-TRTAYWELVRDHFAILKVGPALTF 286 (420)
T ss_dssp CCGGGGHHHHHHHTTSSCEEEESCCTTC-CHHHHHHHHHTTEEEEEECHHHHH
T ss_pred cCHHHHHHHHHhcCCCCEEEecCCCCCC-CHHHHHHHHHcCCCEEEECHHHHH
Confidence 3466777787777789 663 245666 689999999999999999998874
|
| >3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=88.19 E-value=4.6 Score=37.44 Aligned_cols=46 Identities=20% Similarity=0.154 Sum_probs=38.3
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVF 256 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~ 256 (310)
+++.++++++.+++||+ +.+.+.++.++.++++.| +|.|++--.-+
T Consensus 225 ~~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~~l~~~~~d~v~ik~~~~ 271 (378)
T 3eez_A 225 TLDDIAAIRPLHSAPVS--VDECLVTLQDAARVARDGLAEVFGIKLNRV 271 (378)
T ss_dssp SHHHHHHTGGGCCCCEE--ECTTCCSHHHHHHHHHTTCCSEEEEEHHHH
T ss_pred CHHHHHHHHhhCCCCEE--ECCCCCCHHHHHHHHHcCCCCEEEeCchhc
Confidence 57778888888899998 788999999999999875 89998875544
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=88.08 E-value=1.1 Score=40.83 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHcCCcEEEec-c--CCc----cccccc-----C--CCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHH
Q 021609 43 VTPEQARVAEEAGACAVMAL-E--RVP----ADIRSQ-----G--GVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEA 107 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L-~--~~~----~~~~~~-----~--G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a 107 (310)
.+++.|+.+.++|+|+| .+ | ... ...+.. . ...-....+.+.++++.+ ++||++...+...+++
T Consensus 193 ~~~e~a~~~~~~G~d~I-~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~ 271 (332)
T 1vcf_A 193 LSREAALALRDLPLAAV-DVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDG 271 (332)
T ss_dssp CCHHHHHHHTTSCCSEE-ECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHH
T ss_pred CCHHHHHHHHHcCCCEE-EeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcCCCeEEEECCCCCHHHH
Confidence 57889999999999998 43 2 100 000100 0 000123356778888888 7999998777777888
Q ss_pred HHHHHcCCCEEE
Q 021609 108 QILEAIGIDYVD 119 (310)
Q Consensus 108 ~~~~~aGad~Vi 119 (310)
..+...|||.|-
T Consensus 272 ~kal~~GAd~V~ 283 (332)
T 1vcf_A 272 AKALALGADLLA 283 (332)
T ss_dssp HHHHHHTCSEEE
T ss_pred HHHHHhCCChHh
Confidence 888889999994
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=88.05 E-value=15 Score=33.13 Aligned_cols=82 Identities=15% Similarity=0.108 Sum_probs=45.2
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc---HHHHHHHHHcCCCE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH---FVEAQILEAIGIDY 117 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~---~~~a~~~~~aGad~ 117 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-+. .+.++.+.++|||+
T Consensus 37 ~lv~~li~~Gv~gl~v~G-t------TGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~st~~ai~la~~A~~~Gada 109 (314)
T 3d0c_A 37 DNVEFLLQNGIEVIVPNG-N------TGEFYALTIEEAKQVATRVTELVNGRATVVAGIGYSVDTAIELGKSAIDSGADC 109 (314)
T ss_dssp HHHHHHHHTTCSEECTTS-G------GGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHcCCCEEEECc-c------cCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCcCHHHHHHHHHHHHHcCCCE
Confidence 467777889999984331 1 1101012111 2333334433 589998765421 35567788899999
Q ss_pred EE-eCCC---CCchhHHHHHH
Q 021609 118 VD-ESEV---LTPADEENHIN 134 (310)
Q Consensus 118 Vi-~~~~---~~~~~~~~~i~ 134 (310)
++ .+.. .+..++.++.+
T Consensus 110 vlv~~P~y~~~s~~~l~~~f~ 130 (314)
T 3d0c_A 110 VMIHQPVHPYITDAGAVEYYR 130 (314)
T ss_dssp EEECCCCCSCCCHHHHHHHHH
T ss_pred EEECCCCCCCCCHHHHHHHHH
Confidence 96 3332 23445554443
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=87.95 E-value=1.3 Score=41.01 Aligned_cols=78 Identities=29% Similarity=0.368 Sum_probs=53.8
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEec-cCCcccccccCCCCC---------CCCHHHHHHHHhhcCcceeeccccCcHHHH
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMAL-ERVPADIRSQGGVAR---------MSDPQLIKEIKQSVTIPVMAKARIGHFVEA 107 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L-~~~~~~~~~~~G~~~---------~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a 107 (310)
++..+.+++.++.+.+.|+|.| .+ ++.. ....|... ....+.++++++.+++||++...+...+.+
T Consensus 148 v~~~v~t~~~a~~a~~~GaD~i-~v~g~~~---GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~ 223 (369)
T 3bw2_A 148 TLVTATTPEEARAVEAAGADAV-IAQGVEA---GGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQI 223 (369)
T ss_dssp EEEEESSHHHHHHHHHTTCSEE-EEECTTC---SEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHH
T ss_pred EEEECCCHHHHHHHHHcCCCEE-EEeCCCc---CCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHH
Confidence 3445678888999999999987 33 2110 00001110 112678888888889999998887666788
Q ss_pred HHHHHcCCCEEE
Q 021609 108 QILEAIGIDYVD 119 (310)
Q Consensus 108 ~~~~~aGad~Vi 119 (310)
..+.+.|||+|.
T Consensus 224 ~~~l~~GAd~V~ 235 (369)
T 3bw2_A 224 AAVLAAGADAAQ 235 (369)
T ss_dssp HHHHHTTCSEEE
T ss_pred HHHHHcCCCEEE
Confidence 888899999995
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=87.86 E-value=1.5 Score=40.32 Aligned_cols=83 Identities=18% Similarity=0.054 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCcEEEecc-C-CcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC-CCEEE-eC
Q 021609 46 EQARVAEEAGACAVMALE-R-VPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG-IDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~-~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG-ad~Vi-~~ 121 (310)
++++.+++.|++.| ++- . .........+ ...+.+.++++++.+++||++...+...+.++.+.+.| +|.|- +.
T Consensus 243 ~la~~L~~~Gvd~i-~vs~g~~~~~~~~~~~--~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR 319 (349)
T 3hgj_A 243 AFARRLKELGVDLL-DCSSGGVVLRVRIPLA--PGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVLLGR 319 (349)
T ss_dssp HHHHHHHHTTCCEE-EEECCCSCSSSCCCCC--TTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEEEST
T ss_pred HHHHHHHHcCCCEE-EEecCCcCcccccCCC--ccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEEecH
Confidence 56888999999987 331 1 0000000000 11246788999999999999988776668888888888 99994 33
Q ss_pred CCCCchhHHH
Q 021609 122 EVLTPADEEN 131 (310)
Q Consensus 122 ~~~~~~~~~~ 131 (310)
..+..+++..
T Consensus 320 ~~lanPdl~~ 329 (349)
T 3hgj_A 320 VLLRDPYFPL 329 (349)
T ss_dssp HHHHCTTHHH
T ss_pred HHHhCchHHH
Confidence 3333334433
|
| >4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=0.22 Score=47.02 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=38.2
Q ss_pred HhhcCCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 216 TKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 216 i~~~~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
+++..++||+ +.||+.+..++.+.+ +-+||.|.+|++++. ||. |.+.++++.
T Consensus 313 ir~~~~~pvi--~~G~~~~~~~~~~~~~~~~aDlV~~gR~~ia--dPd-----l~~k~~~G~ 365 (400)
T 4gbu_A 313 VYSIWKGPVI--RAGNFALHPEVVREEVKDKRTLIGYGRFFIS--NPD-----LVDRLEKGL 365 (400)
T ss_dssp HHHHCCSCEE--EESSCTTCHHHHHHHTTSTTEEEECCHHHHH--CTT-----HHHHHHHTC
T ss_pred HHHHhCCCEE--EeCCCCChHHHHHHHHcCCCeEhHHHHHHHH--CcH-----HHHHHHcCC
Confidence 5555678998 579998777776666 557999999999998 665 444454443
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=87.69 E-value=1.7 Score=40.39 Aligned_cols=74 Identities=23% Similarity=0.240 Sum_probs=52.6
Q ss_pred cCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 41 DVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 41 ~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
.+.+++.++.+.++|+++| .+..... +...+ .....+.+.++++.+ ++||+....+...+++..+.++|||.|
T Consensus 232 ~~~~~e~a~~a~~~Gad~I-~vs~~gg--r~~~~--~~~~~~~l~~v~~~~~~~ipvia~GGI~~~~D~~k~l~~GAdaV 306 (370)
T 1gox_A 232 GVITAEDARLAVQHGAAGI-IVSNHGA--RQLDY--VPATIMALEEVVKAAQGRIPVFLDGGVRRGTDVFKALALGAAGV 306 (370)
T ss_dssp CCCSHHHHHHHHHTTCSEE-EECCGGG--TSSTT--CCCHHHHHHHHHHHTTTSSCEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred ecCCHHHHHHHHHcCCCEE-EECCCCC--ccCCC--cccHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHcCCCEE
Confidence 4567899999999999998 3321100 10111 123457788888877 799999887777778888888999999
Q ss_pred E
Q 021609 119 D 119 (310)
Q Consensus 119 i 119 (310)
.
T Consensus 307 ~ 307 (370)
T 1gox_A 307 F 307 (370)
T ss_dssp E
T ss_pred e
Confidence 5
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=87.69 E-value=0.99 Score=43.14 Aligned_cols=74 Identities=23% Similarity=0.265 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcc--ccc----ccCCCC----CCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHc
Q 021609 46 EQARVAEEAGACAVMALERVPA--DIR----SQGGVA----RMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAI 113 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~--~~~----~~~G~~----~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~a 113 (310)
+.|+.++++|+|+|+.-|.... +.+ ..+|-+ .....+.++++++.+ ++||+....+...+++..+..+
T Consensus 315 ~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iPVIg~GGI~s~~DA~e~l~a 394 (443)
T 1tv5_A 315 EIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIASGGIFSGLDALEKIEA 394 (443)
T ss_dssp HHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEEESSCCSHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHc
Confidence 5799999999999855552110 100 011110 001246788888888 8999998888778899889999
Q ss_pred CCCEEE
Q 021609 114 GIDYVD 119 (310)
Q Consensus 114 Gad~Vi 119 (310)
|||.|-
T Consensus 395 GAd~Vq 400 (443)
T 1tv5_A 395 GASVCQ 400 (443)
T ss_dssp TEEEEE
T ss_pred CCCEEE
Confidence 999994
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=87.65 E-value=3.6 Score=38.27 Aligned_cols=42 Identities=7% Similarity=0.012 Sum_probs=34.8
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVG 252 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VG 252 (310)
+++..+++++.+++||+ +.+.+.++.++.++++.| +|.|.+-
T Consensus 246 ~~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~~i~~~~~d~v~ik 288 (393)
T 2og9_A 246 DHEGHAALALQFDTPIA--TGEMLTSAAEHGDLIRHRAADYLMPD 288 (393)
T ss_dssp CHHHHHHHHHHCSSCEE--ECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred cHHHHHHHHHhCCCCEE--eCCCcCCHHHHHHHHHCCCCCEEeeC
Confidence 46777888887889998 678999999999999876 7888753
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=87.61 E-value=5.5 Score=36.71 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=35.6
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCC-HHHHHHHHHcC-CCEEEEcc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVAT-PADAAMMMQLG-CDGVFVGS 253 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t-~~d~~~~l~~G-adgV~VGs 253 (310)
+++..+++++.+++||+ +.+.+.+ +.++.++++.| +|.|++--
T Consensus 239 ~~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~~~i~~~~~d~v~ik~ 283 (382)
T 1rvk_A 239 SLSSYKWLSDNLDIPVV--GPESAAGKHWHRAEWIKAGACDILRTGV 283 (382)
T ss_dssp CHHHHHHHHHHCSSCEE--ECSSCSSHHHHHHHHHHTTCCSEEEECH
T ss_pred hHHHHHHHHhhCCCCEE--EeCCccCcHHHHHHHHHcCCCCEEeeCc
Confidence 46677888877889998 6899999 99999999776 89988743
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=2.7 Score=37.62 Aligned_cols=85 Identities=21% Similarity=0.298 Sum_probs=49.4
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 28 v~~li~~Gv~gl~~~GttGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~gr~pvi~-Gv 77 (291)
T 3a5f_A 28 IEWHIKSKTDAIIVCGTTGEA-------------------TTMTETER----------KETIKFVIDKVNKRIPVIA-GT 77 (291)
T ss_dssp HHHHHHTTCCEEEESSGGGTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCEEE-EC
T ss_pred HHHHHHcCCCEEEECccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-eC
Confidence 455677899999888764322 22232211 1223333221 4689985 45
Q ss_pred CCCCCHHHHHH---HHHcCCCEEEEccccccCCCHHHHHH
Q 021609 230 GGVATPADAAM---MMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 230 GGI~t~~d~~~---~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
|+.++.+.+.. +.++|||++++....|..+++....+
T Consensus 78 g~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~ 117 (291)
T 3a5f_A 78 GSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVK 117 (291)
T ss_dssp CCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHH
T ss_pred CcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHH
Confidence 66544443322 33579999999999997666544443
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=87.59 E-value=8.7 Score=35.26 Aligned_cols=52 Identities=6% Similarity=-0.174 Sum_probs=39.5
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHH
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~ 264 (310)
+++.++++++.+++||+ +.+.+.++.++.++++.| +|.|++--.-+. .+..+
T Consensus 230 d~~~~~~l~~~~~iPI~--~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G--Gi~~~ 282 (371)
T 2ovl_A 230 DLVGNARIVRESGHTIA--GGENLHTLYDFHNAVRAGSLTLPEPDVSNIG--GYTTF 282 (371)
T ss_dssp CHHHHHHHHHHHCSCEE--ECTTCCSHHHHHHHHHHTCCSEECCCTTTTT--SHHHH
T ss_pred cHHHHHHHHhhCCCCEE--eCCCCCCHHHHHHHHHcCCCCEEeeCccccC--CHHHH
Confidence 46677788777789998 789999999999999765 899887654443 44433
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=87.54 E-value=1.5 Score=40.20 Aligned_cols=71 Identities=13% Similarity=0.003 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCcEEEec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC-CCEEE
Q 021609 46 EQARVAEEAGACAVMAL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG-IDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG-ad~Vi 119 (310)
+.++.+++.|++.| ++ +..........+ ...+.+.++++++.+++||++...+...++++.+.+.| ||.|.
T Consensus 233 ~~a~~l~~~Gvd~i-~v~~~~~~~~~~~~~--~~~~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V~ 305 (338)
T 1z41_A 233 GFAKWMKEQGVDLI-DCSSGALVHADINVF--PGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIF 305 (338)
T ss_dssp HHHHHHHHTTCCEE-EEECCCSSCCCCCCC--TTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHcCCCEE-EEecCccccCCCCCC--ccchHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEEe
Confidence 57889999999987 43 111000000000 01236788999999999999988876678888888888 99994
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=87.52 E-value=8.6 Score=35.62 Aligned_cols=42 Identities=12% Similarity=0.023 Sum_probs=34.7
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVG 252 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VG 252 (310)
+++..+++++.+++||+ +.+.+.++.++.++++.| +|.|.+-
T Consensus 233 d~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~~i~~~~~d~v~ik 275 (391)
T 2qgy_A 233 NISLLTEIKNTFNMKVV--TGEKQSGLVHFRELISRNAADIFNPD 275 (391)
T ss_dssp CHHHHHHHHHHCSSCEE--ECTTCCSHHHHHHHHHTTCCSEECCB
T ss_pred hHHHHHHHHhhCCCCEE--EcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence 46677888877889998 679999999999999776 7888774
|
| >3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A* | Back alignment and structure |
|---|
Probab=87.49 E-value=5.9 Score=37.51 Aligned_cols=224 Identities=16% Similarity=0.114 Sum_probs=0.0
Q ss_pred ccccCCCHHHHHHHHHcCCcEEEecc----CC-----cccccccCCCCCCCCHHHHHHHHhhc-----------------
Q 021609 38 VIMDVVTPEQARVAEEAGACAVMALE----RV-----PADIRSQGGVARMSDPQLIKEIKQSV----------------- 91 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga~~i~~L~----~~-----~~~~~~~~G~~~~~~~~~i~~i~~~~----------------- 91 (310)
.+..+-|+-.|+.++++|+++| .+. .. ....-..+-..+...++.+++|.+.+
T Consensus 64 ~~~ga~D~~sA~~~~~aGf~Ai-y~SG~~vAa~~~~~~~G~PD~~~~~~~ev~~~v~rI~~a~~~~d~~~~~~~~~~~~~ 142 (433)
T 3eol_A 64 NALGALSGNQAMQMVRAGLKAI-YLSGWQVAADANTASAMYPDQSLYPANAGPELAKRINRTLQRADQIETAEGKGLSVD 142 (433)
T ss_dssp EEEBCSSHHHHHHHHHTTCCCE-EEC-----------------------CHHHHHHHHHHHHHHHHHHHHHHTTSCCSSS
T ss_pred EeCCCCcHHHHHHHHHhCCCEE-EechHHHHhccchhcCCCCCCccCCHHHHHHHHHHHHHHHHHhhhhhhhhccccccc
Q ss_pred --CcceeeccccCc------HHHHHHHHHcCCCEEEeCCCC---------------CchhHHHHHHhc-------CCCCc
Q 021609 92 --TIPVMAKARIGH------FVEAQILEAIGIDYVDESEVL---------------TPADEENHINKH-------NFRIP 141 (310)
Q Consensus 92 --~iPv~vk~~~~~------~~~a~~~~~aGad~Vi~~~~~---------------~~~~~~~~i~~~-------~~~i~ 141 (310)
.+||++..-.|+ ...++.++++||-+|.+-|.. +..+....|+.. +.++.
T Consensus 143 d~~lPIiaD~DtGfG~~~nv~rtVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~d~v 222 (433)
T 3eol_A 143 TWFAPIVADAEAGFGDPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTL 222 (433)
T ss_dssp CSCCCEEEECC---CCHHHHHHHHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTCCCE
T ss_pred CCCCCeEEECCCCCCCcHHHHHHHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEE
Q ss_pred EEEecCC-----------------------------------HHHHHH---HHHhCCCEEEEcCCCCCcchHHHHHHHHh
Q 021609 142 FVCGCRN-----------------------------------LGEALR---RIREGAAMIRTKGEAGTGNIIEAVRHVRS 183 (310)
Q Consensus 142 ~~v~~~t-----------------------------------~~ea~~---~~~~Gad~V~v~g~~~~~~~~~~~~~~r~ 183 (310)
+++-+.. .+++.+ +...|+|.|.++.
T Consensus 223 IiARTDA~~a~l~~s~~d~rd~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~GAD~If~e~---------------- 286 (433)
T 3eol_A 223 IVARTDAEAAKLLTSDIDERDQPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAPYCDLIWMET---------------- 286 (433)
T ss_dssp EEEEECTTTCCEESCCCSTTTGGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGGGCSEEEECC----------------
T ss_pred EEEEcCCccccccccCcccccccceeccCcccccccccccCCHHHHHHHHHHHHhcCCEEEEeC----------------
Q ss_pred hccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCC--CCEEEeCCCCCCCHH-----H-------HHHHHHcCCCEE
Q 021609 184 VMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGR--LPVVHFAAGGVATPA-----D-------AAMMMQLGCDGV 249 (310)
Q Consensus 184 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~--iPVi~iA~GGI~t~~-----d-------~~~~l~~GadgV 249 (310)
..++.+.++.+.+..+ .|+-..+.+.--+.. + ..++-++|+.-+
T Consensus 287 ----------------------~~~~~eei~~f~~~v~~~~P~~~L~~~~sPsfnw~~~~~~~~~~~f~~eLa~lGv~~v 344 (433)
T 3eol_A 287 ----------------------SKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNWKKNLDDATIAKFQRELGAMGYKFQ 344 (433)
T ss_dssp ----------------------SSCCHHHHHHHHHHHHHHSTTCCEEEECCSSSCHHHHSCHHHHHHHHHHHHHHTEEEE
T ss_pred ----------------------CCCCHHHHHHHHHHhcccCCCcccccCCCCCCcccccCChhHHhHHHHHHHHcCCeEE
Q ss_pred EEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccch--hcccCccchhhhhc
Q 021609 250 FVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAM--VGLNLSDHKVERFA 306 (310)
Q Consensus 250 ~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 306 (310)
.++.+.++ ..+..+.+..+.+.+...+..+. ...++. .-.|.+..+-.+|.
T Consensus 345 ~~~~a~~r-----aa~~A~~~~a~~i~~~G~~ayve-~Q~~e~~~~~~g~~~~~hq~~~ 397 (433)
T 3eol_A 345 FITLAGFH-----QLNYGMFELARGYKDRQMAAYSE-LQQAEFAAEADGYTATKHQREV 397 (433)
T ss_dssp EETTHHHH-----HHHHHHHHHHHHHHHHTHHHHHH-HHHHHHHHGGGTCCCC------
T ss_pred EeCcHHHH-----HHHHHHHHHHHHHHHcCCHHHHH-HHHHhhhhhccCceeeeccccc
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=87.48 E-value=2.8 Score=36.87 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=67.0
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHH---Hhh---cCcceeecccc
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEI---KQS---VTIPVMAKARI 101 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i---~~~---~~iPv~vk~~~ 101 (310)
.|++..+..| +.... .+.++.+.++|+.++ .|+.+. ...|.......+.+.+| +++ .++|+.+.-+.
T Consensus 81 ~pviaD~~~G-yg~~~-~~~~~~l~~aGa~gv-~iEd~~----~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRt 153 (255)
T 2qiw_A 81 IPVSVDVESG-YGLSP-ADLIAQILEAGAVGI-NVEDVV----HSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRT 153 (255)
T ss_dssp SCEEEECTTC-TTCCH-HHHHHHHHHTTCCEE-EECSEE----GGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred CCEEeccCCC-cCcHH-HHHHHHHHHcCCcEE-EECCCC----CCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 3555545555 32211 677889999999997 775221 00011111112334444 333 26886554332
Q ss_pred C---------------cHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEe-cCCH----HHHHHHHHhCCC
Q 021609 102 G---------------HFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG-CRNL----GEALRRIREGAA 161 (310)
Q Consensus 102 ~---------------~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~-~~t~----~ea~~~~~~Gad 161 (310)
+ ..++++.+.++|||.|..... +..+..+.+.+ ...+|..+- .... -....+.++|+.
T Consensus 154 d~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~-~~~~~~~~i~~-~~~~P~n~~~~~~~~~p~~~~~eL~~lGv~ 231 (255)
T 2qiw_A 154 DAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPVGL-STAEQVERLVD-AVSVPVNITAHPVDGHGAGDLATLAGLGVR 231 (255)
T ss_dssp CHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEECCC-CSHHHHHHHHT-TCSSCBEEECBTTTBBTTBCHHHHHHTTCC
T ss_pred chhhccCCcchHHHHHHHHHHHHHHHcCCcEEEEcCC-CCHHHHHHHHH-hCCCCEEEEecCCCCCCCCCHHHHHHcCCC
Confidence 2 135678889999999975433 33344444433 233332221 1111 134556788998
Q ss_pred EEEEc
Q 021609 162 MIRTK 166 (310)
Q Consensus 162 ~V~v~ 166 (310)
.|...
T Consensus 232 ~v~~~ 236 (255)
T 2qiw_A 232 RVTFG 236 (255)
T ss_dssp EEECT
T ss_pred EEEEH
Confidence 88754
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=87.42 E-value=16 Score=32.86 Aligned_cols=83 Identities=7% Similarity=0.042 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCC-
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGI- 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGa- 115 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|+
T Consensus 32 ~lv~~li~~Gv~Gl~v~G-t------TGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga~ 104 (311)
T 3h5d_A 32 ALIEHLLAHHTDGILLAG-T------TAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGGF 104 (311)
T ss_dssp HHHHHHHHTTCCCEEESS-T------TTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHcCCCEEEECc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCCC
Confidence 567788899999985441 1 1101112211 2333344443 589998765432 355678888997
Q ss_pred CEEE-eCCC---CCchhHHHHHHh
Q 021609 116 DYVD-ESEV---LTPADEENHINK 135 (310)
Q Consensus 116 d~Vi-~~~~---~~~~~~~~~i~~ 135 (310)
|+++ .+.. .+..++.++.+.
T Consensus 105 davlv~~P~y~~~s~~~l~~~f~~ 128 (311)
T 3h5d_A 105 AAGLAIVPYYNKPSQEGMYQHFKA 128 (311)
T ss_dssp SEEEEECCCSSCCCHHHHHHHHHH
T ss_pred cEEEEcCCCCCCCCHHHHHHHHHH
Confidence 9995 4332 234555555543
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=87.37 E-value=5.3 Score=36.66 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=36.3
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSG 254 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsa 254 (310)
+++..+++++..++||+ +.+.+.++.++.++++.| +|.|++--.
T Consensus 225 d~~~~~~l~~~~~iPI~--~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 269 (369)
T 2p8b_A 225 DIDAMAHIRSKTDLPLM--IDEGLKSSREMRQIIKLEAADKVNIKLM 269 (369)
T ss_dssp CHHHHHHHHHTCCSCEE--ESTTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred cHHHHHHHHHhCCCCEE--eCCCCCCHHHHHHHHHhCCCCEEEeecc
Confidence 46778888888899998 678899999999999765 899987543
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=87.33 E-value=1.7 Score=39.78 Aligned_cols=77 Identities=19% Similarity=0.198 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHcCCcEEEecc--CCc----ccccccC-----CCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHH
Q 021609 43 VTPEQARVAEEAGACAVMALE--RVP----ADIRSQG-----GVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQIL 110 (310)
Q Consensus 43 ~~~~~A~~~~~~Ga~~i~~L~--~~~----~~~~~~~-----G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~ 110 (310)
.+++.|+.+.++|+++|+.-| ..+ ...+..+ ...-....+.+.++++.+ ++||++...+...+++..+
T Consensus 190 ~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~ 269 (349)
T 1p0k_A 190 MSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKA 269 (349)
T ss_dssp CCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence 568999999999999983323 100 0001100 001123456788887776 8999998887777888888
Q ss_pred HHcCCCEEE
Q 021609 111 EAIGIDYVD 119 (310)
Q Consensus 111 ~~aGad~Vi 119 (310)
..+|||.|.
T Consensus 270 l~~GAd~V~ 278 (349)
T 1p0k_A 270 IALGASCTG 278 (349)
T ss_dssp HHTTCSEEE
T ss_pred HHcCCCEEE
Confidence 889999995
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=87.27 E-value=0.55 Score=40.81 Aligned_cols=49 Identities=18% Similarity=0.132 Sum_probs=39.2
Q ss_pred CHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE-eCCCCCchhH
Q 021609 80 DPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD-ESEVLTPADE 129 (310)
Q Consensus 80 ~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~ 129 (310)
+.+.++++++.+ ++|+.+...+...++++.+. .|||.|+ ++....+.++
T Consensus 167 ~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~~p~~ 217 (228)
T 3vzx_A 167 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYEDFDR 217 (228)
T ss_dssp CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHCHHH
T ss_pred CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhcCHHH
Confidence 689999999999 89999999888878888887 7999996 5544433333
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=87.15 E-value=1.4 Score=41.30 Aligned_cols=62 Identities=23% Similarity=0.346 Sum_probs=42.7
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc----cccCCCHHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG----VFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa----i~~a~dp~~~a~~l~~~i 272 (310)
..++.++++++..++||++ .|+.+++++..+.++|+|+|.|+.. +...........++.+++
T Consensus 239 ~~~~~i~~lr~~~~~Pviv---Kgv~~~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av 304 (392)
T 2nzl_A 239 ISWEDIKWLRRLTSLPIVA---KGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAV 304 (392)
T ss_dssp CCHHHHHHHC--CCSCEEE---EEECCHHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCEEE---EecCCHHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHc
Confidence 3578899999888999984 5778999999999999999999432 222223344444555555
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=87.09 E-value=17 Score=32.80 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 36 ~lv~~li~~Gv~gl~v~G-t------TGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad 108 (318)
T 3qfe_A 36 RYYAYLARSGLTGLVILG-T------NAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGAN 108 (318)
T ss_dssp HHHHHHHTTTCSEEEESS-G------GGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHcCCCEEEeCc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 467778899999985441 1 1101112212 2333334443 589998765332 4667888889999
Q ss_pred EEE
Q 021609 117 YVD 119 (310)
Q Consensus 117 ~Vi 119 (310)
+++
T Consensus 109 avl 111 (318)
T 3qfe_A 109 YVL 111 (318)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=87.08 E-value=8.8 Score=33.49 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=29.7
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCC
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~d 260 (310)
+++|+ -+|+| +++++.+++ ....||++||++=++ ++
T Consensus 199 ~vrIl--YGGSV-~~~N~~~l~~~~diDG~LVGgASL~-~~ 235 (244)
T 2v5b_A 199 QLRIL--YGGSV-TAKNARTLYQMRDINGFLVGGASLK-PE 235 (244)
T ss_dssp HCEEE--ECSCC-CHHHHHHHHTSTTCCEEEESGGGSS-TT
T ss_pred cccEE--EcCCC-CHhHHHHHhcCCCCCeeeechHHHH-HH
Confidence 47888 36777 799999998 468999999999987 55
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=4.7 Score=37.34 Aligned_cols=84 Identities=19% Similarity=0.214 Sum_probs=49.0
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 86 v~~li~~Gv~Gl~v~GTTGE~-------------------~~Ls~eEr----------~~vi~~~ve~~~grvpVia-Gv 135 (360)
T 4dpp_A 86 VNIQIQNGAEGVIVGGTTGEG-------------------QLMSWDEH----------IMLIGHTVNCFGGSIKVIG-NT 135 (360)
T ss_dssp HHHHHHTTCCEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTTSEEEE-EC
T ss_pred HHHHHHcCCCEEEecccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCeEEE-ec
Confidence 445667899999988865422 12222211 1223322221 4689985 35
Q ss_pred CCCCCHHHHHHH----HHcCCCEEEEccccccCCCHHHHHH
Q 021609 230 GGVATPADAAMM----MQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 230 GGI~t~~d~~~~----l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
|+-+ .+++.++ .++|||++++-...+..++.....+
T Consensus 136 g~~s-t~eai~la~~A~~~Gadavlvv~PyY~k~sq~gl~~ 175 (360)
T 4dpp_A 136 GSNS-TREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIA 175 (360)
T ss_dssp CCSS-HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHH
T ss_pred CCCC-HHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHH
Confidence 5554 4443333 3579999999999987666554444
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=86.79 E-value=1.2 Score=40.40 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHH-cCCCEEE-eCC
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEA-IGIDYVD-ESE 122 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~-aGad~Vi-~~~ 122 (310)
.+.|+.++++|+++|..-..... ....+ ..+.+.++++++ ++||++...+...+++..+.+ .|||+|. +..
T Consensus 143 ~~~a~~l~~~G~d~i~v~g~~~~--~~~~~---~~~~~~i~~i~~--~ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~ 215 (318)
T 1vhn_A 143 EEIYRILVEEGVDEVFIHTRTVV--QSFTG---RAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARG 215 (318)
T ss_dssp HHHHHHHHHTTCCEEEEESSCTT--TTTSS---CCCGGGGGGSCC--SSCEEEESSCCSHHHHHHHHHHHCCSEEEESGG
T ss_pred HHHHHHHHHhCCCEEEEcCCCcc--ccCCC---CcCHHHHHHHHc--CCeEEEECCcCCHHHHHHHHHcCCCCEEEECHH
Confidence 37899999999999822111100 00111 123466777776 899999888766678877776 7999995 444
Q ss_pred CCCchhHHHHH
Q 021609 123 VLTPADEENHI 133 (310)
Q Consensus 123 ~~~~~~~~~~i 133 (310)
.+..+++...+
T Consensus 216 ~l~~P~l~~~~ 226 (318)
T 1vhn_A 216 AIGRPWIFKQI 226 (318)
T ss_dssp GTTCTTHHHHH
T ss_pred HHhCcchHHHH
Confidence 44444443333
|
| >3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=86.65 E-value=5.4 Score=35.40 Aligned_cols=34 Identities=29% Similarity=0.566 Sum_probs=28.3
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEcccccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~ 257 (310)
+++|+ -+|+| +++++.+++ ..+.||++||++-++
T Consensus 226 ~vrIL--YGGSV-~~~N~~el~~~~diDG~LVGgASL~ 260 (271)
T 3krs_A 226 NLRII--YGGSV-TPDNCNELIKCADIDGFLVGGASLK 260 (271)
T ss_dssp HCCEE--ECSCC-CTTTHHHHHHSTTCCEEEESGGGGS
T ss_pred CccEE--EcCCc-CHHHHHHHhcCCCCCEEEeeHHhhh
Confidence 47898 46888 588888877 579999999999997
|
| >1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A | Back alignment and structure |
|---|
Probab=86.62 E-value=3 Score=39.51 Aligned_cols=36 Identities=14% Similarity=0.014 Sum_probs=23.1
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccC
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALER 64 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~ 64 (310)
.|++.....|+-....-.+.++.++++|+.++ .++.
T Consensus 149 ~PIiaD~DtGfG~~~nv~~tvk~~i~AGaaGi-~IED 184 (429)
T 1f8m_A 149 APIVADGEAGFGGALNVYELQKALIAAGVAGS-HWED 184 (429)
T ss_dssp CCEEEECTTTTSSHHHHHHHHHHHHHTTCSEE-EEEC
T ss_pred CCEEEECCCCCCCcHHHHHHHHHHHHcCCEEE-EEec
Confidence 45555444443333322378999999999997 7763
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=86.58 E-value=1.5 Score=42.55 Aligned_cols=61 Identities=20% Similarity=0.325 Sum_probs=44.8
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc----cccccCCCHHHHHHHHHHHH
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG----SGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG----sai~~a~dp~~~a~~l~~~i 272 (310)
.++.++++++..++||++ .|+.+++++..+.++|+|+|.|+ +.+.....+.....++.+.+
T Consensus 331 ~~~~i~~lr~~~~~Pviv---Kgv~~~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v 395 (511)
T 1kbi_A 331 TWKDIEELKKKTKLPIVI---KGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPIL 395 (511)
T ss_dssp CHHHHHHHHHHCSSCEEE---EEECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcEEE---EeCCCHHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHH
Confidence 478889999888999984 57778999999999999999993 33333333444455555555
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=86.54 E-value=18 Score=32.49 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=46.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..++.+.+.|+++++.+. ..|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|||
T Consensus 33 ~lv~~li~~Gv~gl~v~G-------tTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad 105 (309)
T 3fkr_A 33 RAVDFMIDAGSDGLCILA-------NFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAA 105 (309)
T ss_dssp HHHHHHHHTTCSCEEESS-------GGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECc-------cccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCC
Confidence 467778899999985441 11101112211 2333334433 699998765332 4667888899999
Q ss_pred EEE-eCCC------CCchhHHHHHH
Q 021609 117 YVD-ESEV------LTPADEENHIN 134 (310)
Q Consensus 117 ~Vi-~~~~------~~~~~~~~~i~ 134 (310)
+++ .+.. .+..++.++.+
T Consensus 106 avlv~~Pyy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 106 MVMAMPPYHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp EEEECCSCBTTTBCCCHHHHHHHHH
T ss_pred EEEEcCCCCccCCCCCHHHHHHHHH
Confidence 996 3332 23455555544
|
| >3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A | Back alignment and structure |
|---|
Probab=86.54 E-value=5.2 Score=35.19 Aligned_cols=34 Identities=21% Similarity=0.481 Sum_probs=28.1
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEcccccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~ 257 (310)
+++|+ -+|+| +++++.+++ ..+.||++||++-++
T Consensus 207 ~vrIl--YGGSV-~~~N~~~l~~~~diDG~LVGgASL~ 241 (255)
T 3qst_A 207 KVRIL--YGGSV-KPNNCNELAACPDVDGFLVGGASLE 241 (255)
T ss_dssp HCEEE--ECSCC-CTTTHHHHHHSTTCCEEEECGGGGS
T ss_pred cccEE--EcCCc-CHhHHHHHhcCCCCCEEEeeHHHhh
Confidence 47888 46888 588888877 579999999999997
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=86.45 E-value=5.5 Score=36.57 Aligned_cols=50 Identities=20% Similarity=0.313 Sum_probs=32.1
Q ss_pred CCCCEEEeCCCCCCCHHHHHH---HHHcCCCEEEEccccccC-CCHHHHHHHHHH
Q 021609 220 GRLPVVHFAAGGVATPADAAM---MMQLGCDGVFVGSGVFKS-GDPVKRAQAIVR 270 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~---~l~~GadgV~VGsai~~a-~dp~~~a~~l~~ 270 (310)
.++||++ ..|+.++.+-+.. +.++|||++++....|.. .+.....+-|..
T Consensus 91 grvpVia-Gvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~ 144 (344)
T 2hmc_A 91 AGIPVIV-GTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKA 144 (344)
T ss_dssp TTCCEEE-ECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHH
T ss_pred CCCcEEE-ecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHH
Confidence 5799985 4566544433322 335799999999999976 565555443333
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=86.45 E-value=0.9 Score=41.41 Aligned_cols=74 Identities=16% Similarity=0.294 Sum_probs=49.1
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccc------cccCCCCC----CCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADI------RSQGGVAR----MSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~------~~~~G~~~----~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~ 111 (310)
+.|+.++++|+|+|..-|.. .... ...+|..- ....+.++++++.+ ++||+....+...+++..+.
T Consensus 229 ~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l 308 (336)
T 1f76_A 229 QVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDSVIAAREKI 308 (336)
T ss_dssp HHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCSHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH
Confidence 56899999999998433311 0000 01111100 01236788888888 89999988887778898888
Q ss_pred HcCCCEEE
Q 021609 112 AIGIDYVD 119 (310)
Q Consensus 112 ~aGad~Vi 119 (310)
++|||.|-
T Consensus 309 ~~GAd~V~ 316 (336)
T 1f76_A 309 AAGASLVQ 316 (336)
T ss_dssp HHTCSEEE
T ss_pred HCCCCEEE
Confidence 99999994
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=86.44 E-value=2.9 Score=37.92 Aligned_cols=47 Identities=19% Similarity=0.137 Sum_probs=30.6
Q ss_pred CCCCEEEeCCCCCCCHHHHHHH----HHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 220 GRLPVVHFAAGGVATPADAAMM----MQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~----l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
.++||++ ..|. +.++..++ .++|||++++....+..+++....+-|.
T Consensus 80 grvpVia-Gvg~--~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~ 130 (316)
T 3e96_A 80 GRALVVA-GIGY--ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFR 130 (316)
T ss_dssp TSSEEEE-EECS--SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHH
T ss_pred CCCcEEE-EeCc--CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHH
Confidence 4689984 2343 44544333 3579999999999997666655554333
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=86.30 E-value=6.1 Score=36.73 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=34.2
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEE
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFV 251 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~V 251 (310)
+++..+++++..++||+ +.+.+.++.++.++++.| +|.|.+
T Consensus 228 ~~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~~i~~~~~d~v~i 269 (397)
T 2qde_A 228 DLDGMARLRGKVATPIY--ADESAQELHDLLAIINKGAADGLMI 269 (397)
T ss_dssp CHHHHHHHHTTCSSCEE--ESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred hHHHHHHHHhhCCCCEE--EeCCcCCHHHHHHHHHcCCCCEEEE
Confidence 46777888887889998 678899999999999765 888887
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=86.29 E-value=7.8 Score=34.94 Aligned_cols=88 Identities=14% Similarity=0.191 Sum_probs=51.8
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 34 v~~li~~Gv~Gl~v~GtTGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~grvpVia-Gv 83 (311)
T 3h5d_A 34 IEHLLAHHTDGILLAGTTAES-------------------PTLTHDEE----------LELFAAVQKVVNGRVPLIA-GV 83 (311)
T ss_dssp HHHHHHTTCCCEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHSCSSSCEEE-EC
T ss_pred HHHHHHcCCCEEEECccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-eC
Confidence 445678899999888865422 22222211 2233333332 4699985 44
Q ss_pred CCCCCHHHHHH----HHHcCC-CEEEEccccccCCCHHHHHHHHHH
Q 021609 230 GGVATPADAAM----MMQLGC-DGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 230 GGI~t~~d~~~----~l~~Ga-dgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
|+-+ .++..+ +.++|+ |++++....+..+++....+-|..
T Consensus 84 g~~~-t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~ 128 (311)
T 3h5d_A 84 GTND-TRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKA 128 (311)
T ss_dssp CCSS-HHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHH
T ss_pred CCcC-HHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHH
Confidence 5554 444433 235687 999999999877776655553333
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=86.28 E-value=17 Score=32.19 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=82.7
Q ss_pred HHHHHHHH-cCCCEEE--eCC----CCCchhHH---HHHHh-cCCCCcEEEe--cCCHHHHH----HHHHhCCCEEEEcC
Q 021609 105 VEAQILEA-IGIDYVD--ESE----VLTPADEE---NHINK-HNFRIPFVCG--CRNLGEAL----RRIREGAAMIRTKG 167 (310)
Q Consensus 105 ~~a~~~~~-aGad~Vi--~~~----~~~~~~~~---~~i~~-~~~~i~~~v~--~~t~~ea~----~~~~~Gad~V~v~g 167 (310)
..++-+.+ .|+|+++ ++- .++.+|-. +...+ ..-.++++++ .++.+++. .+.++|+|.+.+..
T Consensus 28 ~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~ 107 (293)
T 1f6k_A 28 QIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVT 107 (293)
T ss_dssp HHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEECC
Confidence 44566778 9999985 322 24544443 33333 2224666555 45555544 45568999987766
Q ss_pred CCC-CcchHHHHHHHHhhccc----eEeec--c-----cChhHHHHhh--------hccCCcHHHHHHHhhc-CCCCEEE
Q 021609 168 EAG-TGNIIEAVRHVRSVMGD----IRVLR--N-----MDDDEVFTFA--------KKIAAPYDLVMQTKQL-GRLPVVH 226 (310)
Q Consensus 168 ~~~-~~~~~~~~~~~r~~~~~----~~~l~--~-----~~~d~~~~~~--------~~~~~~~~~i~~i~~~-~~iPVi~ 226 (310)
+.| ..+-....++.+..... +-++. . ++++.+.+.+ |+...+...+.++.+. .+..|+
T Consensus 108 P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK~s~gd~~~~~~~~~~~~~f~v~- 186 (293)
T 1f6k_A 108 PFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELYKNPKVLGVKFTAGDFYLLERLKKAYPNHLIW- 186 (293)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEEECSCCHHHHHHHHHHCTTSEEE-
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHhcCCCEEEEEECCCCHHHHHHHHHhCCCeEEE-
Confidence 544 22323555666553322 22222 1 2333332221 2233344444444432 233343
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
.|- -+.+...+..|++|++-+.+=+- |... .++.++++++
T Consensus 187 ---~G~--d~~~~~~l~~G~~G~is~~~n~~---P~~~-~~l~~a~~~G 226 (293)
T 1f6k_A 187 ---AGF--DEMMLPAASLGVDGAIGSTFNVN---GVRA-RQIFELTKAG 226 (293)
T ss_dssp ---ECC--GGGHHHHHHTTCSEEEESTHHHH---HHHH-HHHHHHHHTT
T ss_pred ---ECc--HHHHHHHHHCCCcEEEeCHHHhh---HHHH-HHHHHHHHCC
Confidence 342 24577778899999998876442 4333 3355555443
|
| >2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A | Back alignment and structure |
|---|
Probab=86.19 E-value=4.8 Score=36.08 Aligned_cols=120 Identities=16% Similarity=0.100 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccC--CCCCCCCHHHHHHHHhhc----CcceeeccccC----------cHHHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQG--GVARMSDPQLIKEIKQSV----TIPVMAKARIG----------HFVEA 107 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~--G~~~~~~~~~i~~i~~~~----~iPv~vk~~~~----------~~~~a 107 (310)
+.++.++++|+.++ .|+.+ ++.....+ |.......+.+.+|+... .-++.+.-|.. ..+++
T Consensus 94 ~~v~~l~~aGa~gv-~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra 172 (290)
T 2hjp_A 94 YVVPQYEAAGASAI-VMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRG 172 (290)
T ss_dssp HHHHHHHHHTCSEE-EEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCeEE-EEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHH
Confidence 56888899999997 77633 22211212 222222224466665322 22344432211 13667
Q ss_pred HHHHHcCCCEEEeCC-CCCchhHHHHHHhcCCCCcEEEecC--CHHHHHHHHHhC-CCEEEEc
Q 021609 108 QILEAIGIDYVDESE-VLTPADEENHINKHNFRIPFVCGCR--NLGEALRRIREG-AAMIRTK 166 (310)
Q Consensus 108 ~~~~~aGad~Vi~~~-~~~~~~~~~~i~~~~~~i~~~v~~~--t~~ea~~~~~~G-ad~V~v~ 166 (310)
+.+.++|||.|.... ..++.++.+..+.....+++++-+. ..-....+.++| +..|...
T Consensus 173 ~ay~eAGAd~i~~e~~~~~~~~~~~i~~~~~~~vP~i~n~~~~~~~~~~eL~~lG~v~~v~~~ 235 (290)
T 2hjp_A 173 QAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYG 235 (290)
T ss_dssp HHHHHTTCSEEEECCCCSSSHHHHHHHHHCCCSSCEEECGGGCTTSCHHHHHTCTTEEEEEEC
T ss_pred HHHHHcCCcEEEeCCCCCCHHHHHHHHHHcCCCCCEEEeccCCCCCCHHHHHhcCCeeEEEec
Confidence 889999999997554 3335556555544322266654332 011245567889 8888754
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=86.18 E-value=2.8 Score=37.48 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=57.6
Q ss_pred cEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC
Q 021609 141 PFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG 220 (310)
Q Consensus 141 ~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~ 220 (310)
-++.++.+.+.|+.+.++|+..|.+.-+..+ ++ |. .-.. .--++.+.++++++.+
T Consensus 13 ~vimdv~~~eqa~iae~aGa~av~~l~~~p~-d~-------r~-------~gGv----------~Rm~dp~~I~~I~~aV 67 (291)
T 3o07_A 13 GVIMDVVTPEQAKIAEKSGACAVMALESIPA-DM-------RK-------SGKV----------CRMSDPKMIKDIMNSV 67 (291)
T ss_dssp CEEEEESSHHHHHHHHHHTCSEEEECSSCHH-HH-------HT-------TTCC----------CCCCCHHHHHHHHTTC
T ss_pred CeeeecCCHHHHHHHHHhCchhhhhccCCCc-hh-------hh-------cCCc----------cccCCHHHHHHHHHhC
Confidence 4677899999999999999998876532111 00 00 0000 0023577899999999
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
++||+.. --|.....+..+..+|+|.|=
T Consensus 68 sIPVm~k--~righ~~EAqilea~GaD~ID 95 (291)
T 3o07_A 68 SIPVMAK--VRIGHFVEAQIIEALEVDYID 95 (291)
T ss_dssp SSCEEEE--EETTCHHHHHHHHHTTCSEEE
T ss_pred CCCeEEE--EecCcHHHHHHHHHcCCCEEe
Confidence 9999943 566677788877889999883
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=86.10 E-value=7.5 Score=34.53 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=62.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHH---hh---cCcceeeccccCc----------------
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIK---QS---VTIPVMAKARIGH---------------- 103 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~---~~---~~iPv~vk~~~~~---------------- 103 (310)
+.++.++++|+.++ .|+.+.. ..|.......+.+.+|+ ++ .++|+.+.-|...
T Consensus 96 ~~v~~l~~aGaagv-~iED~~~----~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~a 170 (275)
T 2ze3_A 96 RTVEHFAALGVAGV-NLEDATG----LTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAET 170 (275)
T ss_dssp HHHHHHHHTTCSEE-EEECBCS----SSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHH
T ss_pred HHHHHHHHcCCcEE-EECCCcC----CCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHH
Confidence 56888999999997 7752210 01111222234455553 32 2678777543211
Q ss_pred HHHHHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecC-CHHHHHHHHHhCCCEEEEc
Q 021609 104 FVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCR-NLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~~ea~~~~~~Gad~V~v~ 166 (310)
.++++.+.++|||.|......+..++.+..+.. .+|+.+-+. ..-....+.++|+..|...
T Consensus 171 i~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~--~~P~n~~~~~~~~~~~eL~~lGv~~v~~~ 232 (275)
T 2ze3_A 171 VRRGQAYADAGADGIFVPLALQSQDIRALADAL--RVPLNVMAFPGSPVPRALLDAGAARVSFG 232 (275)
T ss_dssp HHHHHHHHHTTCSEEECTTCCCHHHHHHHHHHC--SSCEEEECCTTSCCHHHHHHTTCSEEECT
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhc--CCCEEEecCCCCCCHHHHHHcCCcEEEEC
Confidence 245778888999999744432234445444432 333322221 1122456778899988754
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=86.04 E-value=0.82 Score=38.48 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=48.9
Q ss_pred CCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 42 VVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 42 ~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
..++ +.++.+.+.|++.+ .+++.....+ +. ....+.++++++.+ ++|+.+...++ .+.+..+.++|||+++
T Consensus 113 ~~t~~~~~~~~~~~g~d~i-~v~~g~~g~~-~~----~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vv 185 (211)
T 3f4w_A 113 VDDLPARVRLLEEAGADML-AVHTGTDQQA-AG----RKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDYALLGPDVVI 185 (211)
T ss_dssp CSSHHHHHHHHHHHTCCEE-EEECCHHHHH-TT----CCSHHHHHHHHHHCSSCEEEEESSCC-TTTHHHHHTTCCSEEE
T ss_pred CCCHHHHHHHHHHcCCCEE-EEcCCCcccc-cC----CCCHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHcCCCEEE
Confidence 3444 67888999999976 4432111111 11 12368889998886 89999877765 4678889999999996
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=85.96 E-value=19 Score=32.25 Aligned_cols=83 Identities=11% Similarity=0.133 Sum_probs=46.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|+|
T Consensus 39 ~lv~~li~~Gv~Gl~v~G-t------TGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad 111 (307)
T 3s5o_A 39 ENLHKLGTFPFRGFVVQG-S------NGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGAD 111 (307)
T ss_dssp HHHHHHTTSCCSEEEESS-G------GGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 356777889999985441 1 1101112211 2344444443 689988754322 4567888899999
Q ss_pred EEE-eCCC-----CCchhHHHHHHh
Q 021609 117 YVD-ESEV-----LTPADEENHINK 135 (310)
Q Consensus 117 ~Vi-~~~~-----~~~~~~~~~i~~ 135 (310)
+++ .+.. .+..++.++++.
T Consensus 112 avlv~~P~y~~~~~s~~~l~~~f~~ 136 (307)
T 3s5o_A 112 AAMVVTPCYYRGRMSSAALIHHYTK 136 (307)
T ss_dssp EEEEECCCTTGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCcCCCCCCHHHHHHHHHH
Confidence 996 3432 234455555543
|
| >1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* | Back alignment and structure |
|---|
Probab=85.91 E-value=2.6 Score=36.61 Aligned_cols=116 Identities=15% Similarity=0.112 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-Ccceeecccc----C----cH----HHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARI----G----HF----VEAQILEA 112 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~----~----~~----~~a~~~~~ 112 (310)
..++.+.+.|+|.+ ++. ...+.........+.+..+++.. ++|+++-.|. | .. +..+.+.+
T Consensus 21 ~~~~~~~~~~~D~v-ElR-----vD~l~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~ 94 (238)
T 1sfl_A 21 IQKINHRIDAIDVL-ELR-----IDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLAN 94 (238)
T ss_dssp HHHHHHTTTTCSEE-EEE-----CTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHHHGGG
T ss_pred HHHHHhhhcCCCEE-EEE-----ecccccCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 45666777899976 542 11111000000123444556655 7899885442 1 11 22333444
Q ss_pred c-CCCEEEeCCCC--CchhHHHHHHh-cCCCCcEEEecCC----H--HHHH----HHHHhCCCEEEEcC
Q 021609 113 I-GIDYVDESEVL--TPADEENHINK-HNFRIPFVCGCRN----L--GEAL----RRIREGAAMIRTKG 167 (310)
Q Consensus 113 a-Gad~Vi~~~~~--~~~~~~~~i~~-~~~~i~~~v~~~t----~--~ea~----~~~~~Gad~V~v~g 167 (310)
. ++|+|..-... ......+.++. +..+..++++-|+ + ++.. ++.+.|||++++-.
T Consensus 95 ~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaDivKia~ 163 (238)
T 1sfl_A 95 INGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAV 163 (238)
T ss_dssp CTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred hCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 5 69999532222 22222333332 2345666666653 2 3433 33457999988653
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=85.83 E-value=1.6 Score=40.43 Aligned_cols=71 Identities=17% Similarity=0.178 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCcEEEecc-CCc-ccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC-CCEEE
Q 021609 46 EQARVAEEAGACAVMALE-RVP-ADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG-IDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~-~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG-ad~Vi 119 (310)
++++.+++.|++.| ++- ... .......+ ...+.+.++.+++.+++||++...+...+.++.+++.| +|.|.
T Consensus 250 ~la~~L~~~Gvd~i-~vs~g~~~~~~~~~~~--~~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~ 323 (363)
T 3l5l_A 250 ELARRFKAGGLDLL-SVSVGFTIPDTNIPWG--PAFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVS 323 (363)
T ss_dssp HHHHHHHHTTCCEE-EEEECCCSSCCCCCCC--TTTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHcCCCEE-EEecCccccccccCCC--cchhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEE
Confidence 46889999999987 331 100 00000000 11236788899999999999988776678888888888 99995
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=85.82 E-value=4.7 Score=37.42 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=36.4
Q ss_pred cHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccc
Q 021609 209 PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVF 256 (310)
Q Consensus 209 ~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~ 256 (310)
+++..+++++.+ ++||+ +.+.+ ++.++.++++.| +|.|.+...|.
T Consensus 231 ~~~~~~~l~~~~~~iPIa--~dE~~-~~~~~~~~i~~~~~d~v~ikGGit 277 (389)
T 2oz8_A 231 DHDGLRTLRHAVTWTQIN--SGEYL-DLQGKRLLLEAHAADILNVHGQVT 277 (389)
T ss_dssp CHHHHHHHHHHCCSSEEE--ECTTC-CHHHHHHHHHTTCCSEEEECSCHH
T ss_pred CHHHHHHHHhhCCCCCEE--eCCCC-CHHHHHHHHHcCCCCEEEECcCHH
Confidence 467778888877 89998 67889 999999999876 89999973333
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=85.75 E-value=6.3 Score=35.56 Aligned_cols=84 Identities=13% Similarity=0.108 Sum_probs=47.8
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAG 230 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~G 230 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..|
T Consensus 35 v~~li~~Gv~Gl~v~GtTGE~-------------------~~Lt~~Er----------~~v~~~~v~~~grvpVia-Gvg 84 (313)
T 3dz1_A 35 TDFYAEVGCEGVTVLGILGEA-------------------PKLDAAEA----------EAVATRFIKRAKSMQVIV-GVS 84 (313)
T ss_dssp HHHHHHTTCSEEEESTGGGTG-------------------GGSCHHHH----------HHHHHHHHHHCTTSEEEE-ECC
T ss_pred HHHHHHCCCCEEEeCccCcCh-------------------hhCCHHHH----------HHHHHHHHHHcCCCcEEE-ecC
Confidence 455678899999888764321 22232211 2233333222 4789985 455
Q ss_pred CCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHH
Q 021609 231 GVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 231 GI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
+.++.+-+. .+.++|||++++-...+. ++.....+
T Consensus 85 ~~~t~~ai~la~~A~~~Gadavlv~~P~~~-~s~~~l~~ 122 (313)
T 3dz1_A 85 APGFAAMRRLARLSMDAGAAGVMIAPPPSL-RTDEQITT 122 (313)
T ss_dssp CSSHHHHHHHHHHHHHHTCSEEEECCCTTC-CSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCC-CCHHHHHH
Confidence 554433333 223579999999988865 45544443
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=85.67 E-value=1.3 Score=39.89 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=33.4
Q ss_pred HHHHHHHHhhc--CcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 81 PQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 81 ~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
.+.++++++.+ ++||+....+...+++..+.++|||.|-
T Consensus 229 ~~~i~~v~~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ 269 (311)
T 1jub_A 229 LANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQ 269 (311)
T ss_dssp HHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 46788888888 8999998888777888888899999994
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=85.60 E-value=21 Score=32.45 Aligned_cols=181 Identities=13% Similarity=0.102 Sum_probs=104.4
Q ss_pred cCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhh-cCcceeeccccC-cHHHHHHHHHcC
Q 021609 41 DVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQS-VTIPVMAKARIG-HFVEAQILEAIG 114 (310)
Q Consensus 41 ~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~~~-~~~~a~~~~~aG 114 (310)
++.+.+. .+++++.+..-|+++.+. . ..+.|... ....++...+. .++||.+..--+ .++.++.+.++|
T Consensus 24 Nv~n~e~~~Ail~AAee~~sPvIlq~s~g--~-~~y~g~~~--~~~~v~~aa~~~~~VPValHlDHg~~~e~i~~ai~~G 98 (323)
T 2isw_A 24 NVNNMEQIQGIMKAVVQLKSPVILQCSRG--A-LKYSDMIY--LKKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLG 98 (323)
T ss_dssp ECCSHHHHHHHHHHHHHTTCCEEEEEEHH--H-HHHTTTHH--HHHHHHHHHHHCTTSCEEEEEEEECSHHHHHHHHHTT
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECChh--H-HHhCCHHH--HHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 4556654 445577788876666311 1 11111100 02344444555 789999864333 567889999999
Q ss_pred CCEEE--eCCCCCch-------hHHHHHHhcCCCCcE--------EE------e--cCCHHHHHHHH-HhCCCEEEEcCC
Q 021609 115 IDYVD--ESEVLTPA-------DEENHINKHNFRIPF--------VC------G--CRNLGEALRRI-REGAAMIRTKGE 168 (310)
Q Consensus 115 ad~Vi--~~~~~~~~-------~~~~~i~~~~~~i~~--------~v------~--~~t~~ea~~~~-~~Gad~V~v~g~ 168 (310)
.+-|- .+. ++.+ ++.++..+ .++.+ .. + .++++++.+-. +.|+|.+.+.-.
T Consensus 99 FtSVMiDgS~-~p~eENi~~Tk~vv~~ah~--~gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAvaiG 175 (323)
T 2isw_A 99 FSSVMIDASH-HPFDENVRITKEVVAYAHA--RSVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIG 175 (323)
T ss_dssp CSEEEECCTT-SCHHHHHHHHHHHHHHHHT--TTCEEEEEESCC----------CCCCCHHHHHHHHHHHCCSEEEECSS
T ss_pred CCeEEecCCC-CCHHHHHHHHHHHHHHHHH--cCCeEEEEeCCccCCccCcccccccCCHHHHHHHHHHHCCCEEEEecC
Confidence 99993 333 2322 23333322 22211 10 1 26788888866 679999876522
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC--CcHHHHHHHhhcCCCCEEEeCCC----------------
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA--APYDLVMQTKQLGRLPVVHFAAG---------------- 230 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~--~~~~~i~~i~~~~~iPVi~iA~G---------------- 230 (310)
+--| .++... ... -+++.++++++..++|++.=.+.
T Consensus 176 t~HG-----------------~Yk~~~---------~p~~~L~~~~L~~I~~~~~vpLVlHGgSsvp~~~~~~~~~~gg~ 229 (323)
T 2isw_A 176 TSHG-----------------AYKFKS---------ESDIRLAIDRVKTISDLTGIPLVMHGSSSVPKDVKDMINKYGGK 229 (323)
T ss_dssp CCSS-----------------SBCCCC-------------CCCCHHHHHHHHHHCSCEEECSCCCCCHHHHHHHHHTTCC
T ss_pred cccc-----------------ccCCCC---------CcccccCHHHHHHHHHHhCCCeEEECCCCCCHHHHHHHHHhccc
Confidence 1101 111000 111 34677888887778998853333
Q ss_pred -----CCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 231 -----GVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 231 -----GI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
|+ ..+++.++++.|..=|=+++.+-
T Consensus 230 ~~~~~Gv-p~e~i~~ai~~GV~KiNi~Tdl~ 259 (323)
T 2isw_A 230 MPDAVGV-PIESIVHAIGEGVCKINVDSDSR 259 (323)
T ss_dssp CTTCBCC-CHHHHHHHHHTTEEEEEECHHHH
T ss_pred cccCCCC-CHHHHHHHHHCCCeEEEEChHHH
Confidence 77 58999999999999999998775
|
| >3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=85.53 E-value=11 Score=29.28 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=36.2
Q ss_pred HHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 021609 210 YDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 210 ~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l 268 (310)
+++++++++. .++||+.+ .+-.+.++..+++++|+++.+ .|.-+|....+.+
T Consensus 73 ~el~~~ir~~~~~~~ipvI~l--Ta~~~~~~~~~~~~~Ga~~yl-----~KP~~~~~L~~~i 127 (134)
T 3to5_A 73 IDLLKNIRADEELKHLPVLMI--TAEAKREQIIEAAQAGVNGYI-----VKPFTAATLKEKL 127 (134)
T ss_dssp HHHHHHHHHSTTTTTCCEEEE--ESSCCHHHHHHHHHTTCCEEE-----ESSCCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCeEEEE--ECCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHH
Confidence 6677777643 46999865 555689999999999999986 5533454443333
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=85.51 E-value=1.9 Score=38.77 Aligned_cols=50 Identities=18% Similarity=0.265 Sum_probs=32.8
Q ss_pred CCCCEEEeCCCCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 220 GRLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~---~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
.++||++ ..|+.++.+.+. .+.++|||++++....+-.+++....+-|..
T Consensus 72 grvpvia-Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ 124 (300)
T 3eb2_A 72 RRVPVVA-GVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRA 124 (300)
T ss_dssp TSSCBEE-EEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHH
T ss_pred CCCcEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHH
Confidence 4689985 445554444333 2336799999999999977776655553333
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=85.48 E-value=2.5 Score=38.90 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=48.1
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccccccCCC----CCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAVMALE-RVPADIRSQGGV----ARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~----~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+.++.++++|+++| .+. +... . ...|. ....+.+.++++++.+ ++||++...+...++++.+.+ |||+|.
T Consensus 148 ~~a~~l~~aG~d~I-~V~~r~~~-~-g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~ 223 (350)
T 3b0p_A 148 QSVEAMAEAGVKVF-VVHARSAL-L-ALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVM 223 (350)
T ss_dssp HHHHHHHHTTCCEE-EEECSCBC------------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEE
T ss_pred HHHHHHHHcCCCEE-EEecCchh-c-ccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEE
Confidence 67899999999998 332 1100 0 00111 0012468899999998 999999988877788888887 999995
|
| >3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A* | Back alignment and structure |
|---|
Probab=85.41 E-value=2 Score=41.00 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=48.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHH-------HHHHHHh---h--cCcceeeccccCcHHHHHHHHH-
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQ-------LIKEIKQ---S--VTIPVMAKARIGHFVEAQILEA- 112 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~-------~i~~i~~---~--~~iPv~vk~~~~~~~~a~~~~~- 112 (310)
+.|+.+.+.||+.| |++...+.. |.......+ .++.+++ . +++|+.+..+ ..+.++.+.+
T Consensus 216 ~~A~~mv~~GAdII-DIGgeSTrP----Ga~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT~--~~~VaeaAL~~ 288 (442)
T 3mcm_A 216 LNLDELIQSGAEII-DIGAESTKP----DAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDTR--KLEVMQKILAK 288 (442)
T ss_dssp HHHHHHHHHTCSEE-EEECCCCCC--------CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEECC--CHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEE-EECCCCCCC----CCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeCC--CHHHHHHHHhh
Confidence 67889999999965 875222211 111111122 3444555 2 3788888765 3477888888
Q ss_pred -cCCCE-EE-eCCCCCchhHHHHHHhcC
Q 021609 113 -IGIDY-VD-ESEVLTPADEENHINKHN 137 (310)
Q Consensus 113 -aGad~-Vi-~~~~~~~~~~~~~i~~~~ 137 (310)
+|++. |- ++. ....+..+.+++++
T Consensus 289 ~aGa~i~INDVsg-~~d~~m~~v~a~~g 315 (442)
T 3mcm_A 289 HHDIIWMINDVEC-NNIEQKAQLIAKYN 315 (442)
T ss_dssp HGGGCCEEEECCC-TTHHHHHHHHHHHT
T ss_pred CCCCCEEEEcCCC-CCChHHHHHHHHhC
Confidence 99999 73 333 33445555555443
|
| >1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 | Back alignment and structure |
|---|
Probab=85.34 E-value=9.5 Score=28.26 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=40.4
Q ss_pred HHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 210 YDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 210 ~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
+++++.+++. .++|++++ .+-.+.+...++++.|+++++ .+.-++....+.+...++.+.
T Consensus 71 ~~~~~~l~~~~~~~~~pii~l--s~~~~~~~~~~~~~~g~~~~l-----~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 71 REVLAEIKSDPTLKRIPVVVL--STSINEDDIFHSYDLHVNCYI-----TKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp HHHHHHHHHSTTGGGSCEEEE--ESCCCHHHHHHHHHTTCSEEE-----ECCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccccEEEE--ecCCcHHHHHHHHHhchhhee-----cCCCCHHHHHHHHHHHHHHHc
Confidence 5667777664 36899865 444578899999999999986 444456655555555554443
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=85.30 E-value=7.3 Score=35.24 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=46.9
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 38 v~~li~~Gv~gl~v~GtTGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~grvpvia-Gv 87 (318)
T 3qfe_A 38 YAYLARSGLTGLVILGTNAEA-------------------FLLTREER----------AQLIATARKAVGPDFPIMA-GV 87 (318)
T ss_dssp HHHHHTTTCSEEEESSGGGTG-------------------GGSCHHHH----------HHHHHHHHHHHCTTSCEEE-EC
T ss_pred HHHHHHcCCCEEEeCccccCh-------------------hhCCHHHH----------HHHHHHHHHHhCCCCcEEE-eC
Confidence 445667899999888764421 22232211 1233333222 4799985 45
Q ss_pred CCCCCHHHHH---HHHHcCCCEEEEccccccC--CCHHHHHH
Q 021609 230 GGVATPADAA---MMMQLGCDGVFVGSGVFKS--GDPVKRAQ 266 (310)
Q Consensus 230 GGI~t~~d~~---~~l~~GadgV~VGsai~~a--~dp~~~a~ 266 (310)
|+-++.+.+. .+.++|||++++-...|-. .++....+
T Consensus 88 g~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~ 129 (318)
T 3qfe_A 88 GAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKS 129 (318)
T ss_dssp CCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHH
Confidence 6654444333 2235799999999995532 24444444
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=85.12 E-value=5.7 Score=36.90 Aligned_cols=107 Identities=9% Similarity=-0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEE-E--eCCCCCchhHHHHHHh-cCCCCcEEEecC---CHHHHHHHHHh----CCCEEEEcCCCCCcc
Q 021609 105 VEAQILEAIGIDYV-D--ESEVLTPADEENHINK-HNFRIPFVCGCR---NLGEALRRIRE----GAAMIRTKGEAGTGN 173 (310)
Q Consensus 105 ~~a~~~~~aGad~V-i--~~~~~~~~~~~~~i~~-~~~~i~~~v~~~---t~~ea~~~~~~----Gad~V~v~g~~~~~~ 173 (310)
+.++.+.+.|.+.+ + +.+.....+..+.+++ .+.++.+.+++| +.+++.+..+. |.+++----.
T Consensus 157 ~~a~~~~~~G~~~iKiKvG~~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~l~~~~i~~iEqP~~----- 231 (389)
T 3ozy_A 157 DELAGWVEQGFTAAKLKVGRAPRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRILDEAGCYWFEEPLS----- 231 (389)
T ss_dssp HHHHHHHHTTCSEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSEEESCSC-----
T ss_pred HHHHHHHHCCCCEEeeccCCCHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHHHHhcCCCEEECCCC-----
Q ss_pred hHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh-hcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEE
Q 021609 174 IIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK-QLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFV 251 (310)
Q Consensus 174 ~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~-~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~V 251 (310)
..+++.+++++ +.+++||+ +.+.+.++.++.++++.| +|.|.+
T Consensus 232 ---------------------------------~~d~~~~~~l~~~~~~iPIa--~dE~i~~~~~~~~~i~~~~~d~v~i 276 (389)
T 3ozy_A 232 ---------------------------------IDDIEGHRILRAQGTPVRIA--TGENLYTRNAFNDYIRNDAIDVLQA 276 (389)
T ss_dssp ---------------------------------TTCHHHHHHHHTTCCSSEEE--ECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred ---------------------------------cccHHHHHHHHhcCCCCCEE--eCCCCCCHHHHHHHHHcCCCCEEEe
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=84.97 E-value=3.3 Score=39.80 Aligned_cols=110 Identities=15% Similarity=0.165 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE-- 122 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~-- 122 (310)
.+.+..+.+.|++.+ ..+ .. +|- .....+.++.+++.+++|++++... ..+.++.+. |+|.|....
T Consensus 230 ~~~a~~l~~~gvd~l-vvd------ta-~G~-~~~~L~~I~~l~~~~~vpvi~k~v~-~~~~a~~l~--G~d~v~vg~g~ 297 (486)
T 2cu0_A 230 IKRAIELDKAGVDVI-VVD------TA-HAH-NLKAIKSMKEMRQKVDADFIVGNIA-NPKAVDDLT--FADAVKVGIGP 297 (486)
T ss_dssp HHHHHHHHHTTCSEE-EEE------CS-CCC-CHHHHHHHHHHHHTCCSEEEEEEEC-CHHHHTTCT--TSSEEEECSSC
T ss_pred HHHHHHHHHhcCCce-EEE------ec-CCc-EeehhhHHHHHHHHhCCccccCCcC-CHHHHHHhh--CCCeEEEeeee
Confidence 467778889999976 221 11 111 1112567778888889999987653 345555555 999995311
Q ss_pred ------------CCCch----hHHHHHHhcCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEcCC
Q 021609 123 ------------VLTPA----DEENHINKHNFRIPFVC--GCRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 123 ------------~~~~~----~~~~~i~~~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
..... ++.+...+ .++++++ ++.+..++.++..+||+.|.+...
T Consensus 298 g~~~~~r~~~~~g~~~~~~l~~~~~~~~~--~~vpVia~GGi~~~~di~kalalGA~~v~~g~~ 359 (486)
T 2cu0_A 298 GSICTTRIVAGVGVPQITAVAMVADRAQE--YGLYVIADGGIRYSGDIVKAIAAGADAVMLGNL 359 (486)
T ss_dssp STTBCHHHHTCCCCCHHHHHHHHHHHHHH--HTCEEEEESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred ccceeeeEEeecCcchHHHHHHHHHHHHH--cCCcEEecCCCCCHHHHHHHHHcCCCceeeChh
Confidence 01111 11222222 3677877 589999999999999999998653
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=84.93 E-value=11 Score=34.22 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=34.2
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEE
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFV 251 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~V 251 (310)
+++..+++++..++||+ +...+.++.++.++++.| +|.|.+
T Consensus 223 ~~~~~~~l~~~~~ipia--~dE~~~~~~~~~~~i~~~~~d~v~i 264 (345)
T 2zad_A 223 DIEGLKFVRFHSPFPVA--ADESARTKFDVMRLVKEEAVDYVNI 264 (345)
T ss_dssp CHHHHHHHHHHSSSCEE--ESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred cHHHHHHHHHhCCCCEE--EeCCcCCHHHHHHHHHhCCCCEEEE
Confidence 36677788877889998 678899999999999776 888887
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=84.86 E-value=20 Score=31.64 Aligned_cols=172 Identities=15% Similarity=0.112 Sum_probs=89.5
Q ss_pred cceeeccccCc---HHHHHHHHHcCCCEEE--eCC----CCCchhHH---HHHHhcCCCCcEEEecCCHHHHHH----HH
Q 021609 93 IPVMAKARIGH---FVEAQILEAIGIDYVD--ESE----VLTPADEE---NHINKHNFRIPFVCGCRNLGEALR----RI 156 (310)
Q Consensus 93 iPv~vk~~~~~---~~~a~~~~~aGad~Vi--~~~----~~~~~~~~---~~i~~~~~~i~~~v~~~t~~ea~~----~~ 156 (310)
+|+- ...++. ...++-+.+.|+|+++ ++- .++.+|-. +...+.-.++.+.++.++.+++.+ +.
T Consensus 9 TPf~-dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~gvi~Gvg~~~t~~ai~la~~A~ 87 (286)
T 2r91_A 9 TTFR-GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARRVIVQVASLNADEAIALAKYAE 87 (286)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSSEEEECCCSSHHHHHHHHHHHH
T ss_pred cCcC-CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCEEEeeCCCCHHHHHHHHHHHH
Confidence 4555 434432 2445667789999985 332 24444443 333332223556666666655444 55
Q ss_pred HhCCCEEEEcCCCCC--cchHHHHHHHHhhccc----eE--eecc-----cChhHHHHh-----hhccCCcHHHHHHHhh
Q 021609 157 REGAAMIRTKGEAGT--GNIIEAVRHVRSVMGD----IR--VLRN-----MDDDEVFTF-----AKKIAAPYDLVMQTKQ 218 (310)
Q Consensus 157 ~~Gad~V~v~g~~~~--~~~~~~~~~~r~~~~~----~~--~l~~-----~~~d~~~~~-----~~~~~~~~~~i~~i~~ 218 (310)
++|+|.+.+..+.|. .+-....++.+..... +- .+|. ++++.+.+. .|+...+...+.++.+
T Consensus 88 ~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~~pnivgiKds~gd~~~~~~~~~ 167 (286)
T 2r91_A 88 SRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKELGCIRGVKDTNESLAHTLAYKR 167 (286)
T ss_dssp HTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSSCCCHHHHHHHSCEEEEEECCSCHHHHHHHHH
T ss_pred hcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeChhhcCCCCCHHHHHhcCCEEEEEeCCCCHHHHHHHHh
Confidence 689999887766543 2334556666553322 22 2221 233333220 1233344444444443
Q ss_pred c-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 219 L-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 219 ~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
. .+..|+ .|- -+.+...+..|++|++-+.+-+- |.... ++.++++++
T Consensus 168 ~~~~f~v~----~G~--d~~~~~~l~~G~~G~is~~an~~---P~~~~-~l~~a~~~G 215 (286)
T 2r91_A 168 YLPQARVY----NGS--DSLVFASFAVRLDGVVASSANYL---PELLA-GIRDAVAAG 215 (286)
T ss_dssp HCTTSEEE----ECC--GGGHHHHHHTTCSEECCGGGTTC---HHHHH-HHHHHHHTT
T ss_pred cCCCEEEE----Ecc--HHHHHHHHHcCCCEEEecHHHhC---HHHHH-HHHHHHHCC
Confidence 1 134443 343 34566778899999998876552 54333 355555543
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=21 Score=34.82 Aligned_cols=169 Identities=15% Similarity=0.081 Sum_probs=88.5
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccc--cccCCCCCCCCHHHHHHHHhh-cCcceeeccc----cCc--------HHHHHH
Q 021609 46 EQARVAEEAGACAVMALE-RVPADI--RSQGGVARMSDPQLIKEIKQS-VTIPVMAKAR----IGH--------FVEAQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~--~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~----~~~--------~~~a~~ 109 (310)
+++..+.+.|.+.| +.- |...+. +.. .....+.++++++. -+.++.+-.+ .++ ..+++.
T Consensus 51 ~Ia~~L~~~Gv~~I-E~G~patF~~~~rfl----~~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~~ve~ 125 (539)
T 1rqb_A 51 GACADIDAAGYWSV-ECWGGATYDSCIRFL----NEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDK 125 (539)
T ss_dssp GGHHHHHHTTCSEE-EEEETTHHHHHHHTS----CCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEE-EeCcccccccchhcc----CCCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHHHHHH
Confidence 57999999999976 331 110000 000 12235677777764 3555554332 121 345788
Q ss_pred HHHcCCCEEEeCCCCC----chhHHHHHHhcCCCCcEEEec-----CCHHH----HHHHHHhCCCEEEEcCCCCCcchHH
Q 021609 110 LEAIGIDYVDESEVLT----PADEENHINKHNFRIPFVCGC-----RNLGE----ALRRIREGAAMIRTKGEAGTGNIIE 176 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~----~~~~~~~i~~~~~~i~~~v~~-----~t~~e----a~~~~~~Gad~V~v~g~~~~~~~~~ 176 (310)
+.++|+|.|.+-...+ ..+.++.+++.+..+...+++ .+.+. +.++.++|++.|.+-=..+...
T Consensus 126 a~~aGvd~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~--- 202 (539)
T 1rqb_A 126 SAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLK--- 202 (539)
T ss_dssp HHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCC---
T ss_pred HHhCCCCEEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCcC---
Confidence 9999999995333222 223344444444433223332 24433 4445677998877542211111
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC--CCCEEE--eCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG--RLPVVH--FAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~--~iPVi~--iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
|.. ..++++.+++.. ++|+-+ =-..|. ...+...++++||+.|-..
T Consensus 203 -------------------P~~----------v~~lv~~l~~~~p~~i~I~~H~Hnd~Gl-AvAN~laAveAGa~~VD~t 252 (539)
T 1rqb_A 203 -------------------PQP----------AYDIIKAIKDTYGQKTQINLHCHSTTGV-TEVSLMKAIEAGVDVVDTA 252 (539)
T ss_dssp -------------------HHH----------HHHHHHHHHHHHCTTCCEEEEEBCTTSC-HHHHHHHHHHTTCSEEEEB
T ss_pred -------------------HHH----------HHHHHHHHHHhcCCCceEEEEeCCCCCh-HHHHHHHHHHhCCCEEEEe
Confidence 111 133455555443 566532 035677 3677888889999977543
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=84.73 E-value=6.3 Score=34.74 Aligned_cols=107 Identities=11% Similarity=0.189 Sum_probs=68.2
Q ss_pred HHHHHHHHcCCCEEE-eCCC--CCc-------hhHHHHHHh--cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCc
Q 021609 105 VEAQILEAIGIDYVD-ESEV--LTP-------ADEENHINK--HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTG 172 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi-~~~~--~~~-------~~~~~~i~~--~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~ 172 (310)
+.++.+.++|+|.|- .+.. .++ .+-.+.+++ ...+++++.++++...+..+.+. +|++.+..+.
T Consensus 41 ~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kIga~~--- 116 (262)
T 1zco_A 41 KVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMDTRHVELVAKY-SDILQIGARN--- 116 (262)
T ss_dssp HHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCCGGGHHHHHHH-CSEEEECGGG---
T ss_pred HHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeCCHHhHHHHHhh-CCEEEECccc---
Confidence 556777788998884 2110 111 222223322 34689999999999888888888 9999886431
Q ss_pred chHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCC-CHHHHHHHHH----cCC-
Q 021609 173 NIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVA-TPADAAMMMQ----LGC- 246 (310)
Q Consensus 173 ~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~-t~~d~~~~l~----~Ga- 246 (310)
...+.+++++.+ .+.||++ .-|.. |++++..+.+ .|.
T Consensus 117 ----------------------------------~~n~~ll~~~a~-~~kPV~l--k~G~~~t~~e~~~Av~~i~~~Gn~ 159 (262)
T 1zco_A 117 ----------------------------------SQNFELLKEVGK-VENPVLL--KRGMGNTIQELLYSAEYIMAQGNE 159 (262)
T ss_dssp ----------------------------------TTCHHHHHHHTT-SSSCEEE--ECCTTCCHHHHHHHHHHHHTTTCC
T ss_pred ----------------------------------ccCHHHHHHHHh-cCCcEEE--ecCCCCCHHHHHHHHHHHHHCCCC
Confidence 123556777776 6789983 56665 8888877763 465
Q ss_pred CEEEEc
Q 021609 247 DGVFVG 252 (310)
Q Consensus 247 dgV~VG 252 (310)
+.+++=
T Consensus 160 ~i~L~~ 165 (262)
T 1zco_A 160 NVILCE 165 (262)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 444443
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=84.71 E-value=5.4 Score=36.77 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=56.5
Q ss_pred CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 137 ~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
..|+.++.++.+.+.+..+.+.|++++.+..+. -..+.+++.+
T Consensus 89 ~~Gi~~~st~fD~~svd~l~~~~v~~~KI~S~~-------------------------------------~~N~pLL~~v 131 (350)
T 3g8r_A 89 ANGFKAICTPFDEESVDLIEAHGIEIIKIASCS-------------------------------------FTDWPLLERI 131 (350)
T ss_dssp HTTCEEEEEECSHHHHHHHHHTTCCEEEECSSS-------------------------------------TTCHHHHHHH
T ss_pred HcCCcEEeccCCHHHHHHHHHcCCCEEEECccc-------------------------------------ccCHHHHHHH
Confidence 468999999999999999999999999986431 1246688888
Q ss_pred hhcCCCCEEEeCCCCCCCHHHHHHHHH----cCCCEEE
Q 021609 217 KQLGRLPVVHFAAGGVATPADAAMMMQ----LGCDGVF 250 (310)
Q Consensus 217 ~~~~~iPVi~iA~GGI~t~~d~~~~l~----~GadgV~ 250 (310)
.+ .+.||+ .+-|.+|.+++..+.+ .|.+-++
T Consensus 132 a~-~gKPvi--LstGmstl~Ei~~Ave~i~~~g~~viL 166 (350)
T 3g8r_A 132 AR-SDKPVV--ASTAGARREDIDKVVSFMLHRGKDLTI 166 (350)
T ss_dssp HT-SCSCEE--EECTTCCHHHHHHHHHHHHTTTCCEEE
T ss_pred Hh-hCCcEE--EECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 87 578999 4677789999887763 4666444
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=84.67 E-value=10 Score=35.63 Aligned_cols=42 Identities=5% Similarity=-0.016 Sum_probs=34.9
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVG 252 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VG 252 (310)
+++.++++++.+++||+ +...+.++.++.++++.| +|.|.+-
T Consensus 269 d~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~li~~~a~D~v~ik 311 (412)
T 3stp_A 269 DVAGYAELNAMNIVPIS--GGEHEFSVIGCAELINRKAVSVLQYD 311 (412)
T ss_dssp CHHHHHHHHHTCSSCEE--ECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred cHHHHHHHHhCCCCCEE--eCCCCCCHHHHHHHHHcCCCCEEecC
Confidence 46778888888899998 678899999999999876 7777653
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=84.46 E-value=4.6 Score=37.25 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=37.8
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVF 256 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~ 256 (310)
+++..+++++..++||+ +.+.+.+++++.++++.| +|.|++--.-.
T Consensus 225 d~~~~~~l~~~~~iPI~--~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~ 271 (378)
T 2qdd_A 225 TLDQCAHVARRVANPIM--LDECLHEFSDHLAAWSRGACEGVKIKPNRV 271 (378)
T ss_dssp SHHHHHHHHTTCCSCEE--ECTTCCSHHHHHHHHHHTCCSEEEECHHHH
T ss_pred CHHHHHHHHHhCCCCEE--ECCCcCCHHHHHHHHHhCCCCEEEeccccc
Confidence 67788888888899998 678899999999999665 89998854443
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=84.46 E-value=1.3 Score=41.19 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=80.0
Q ss_pred hcCcceeecccc-Cc-------HHHHHHHHHcCCCEEEeCC--CCCchhH---HHHHHhcCCCCcEEE--ec------CC
Q 021609 90 SVTIPVMAKARI-GH-------FVEAQILEAIGIDYVDESE--VLTPADE---ENHINKHNFRIPFVC--GC------RN 148 (310)
Q Consensus 90 ~~~iPv~vk~~~-~~-------~~~a~~~~~aGad~Vi~~~--~~~~~~~---~~~i~~~~~~i~~~v--~~------~t 148 (310)
....|+.+.--. +. ...++.+.+.|+-..+++. .++.+++ .+.+++..++.+++. .+ .+
T Consensus 57 ~l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~~~s~~~vr~~ap~~~~~anlg~~ql~~~~~ 136 (368)
T 3vkj_A 57 EISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPIIANLGMPQLVKGYG 136 (368)
T ss_dssp EESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGGSHHHHHHHHHCSSSCEEEEEEGGGGGTTCC
T ss_pred eccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHHHhhHHHHHHhCcCcceecCcCeeecCCCCC
Confidence 357788775321 22 1247888889999887443 2211211 122343345554443 23 45
Q ss_pred HHHHHHHHH-hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhcCCCCEEE
Q 021609 149 LGEALRRIR-EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQLGRLPVVH 226 (310)
Q Consensus 149 ~~ea~~~~~-~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~ 226 (310)
.+++.++.+ .+++.+.+|-... . +.+. +.-+ ++.. ..++.++.+++..++||++
T Consensus 137 ~~~~~~av~~~~a~al~Ihln~~----~---~~~~---------p~g~--------~~~~~~~~~~i~~i~~~~~vPViv 192 (368)
T 3vkj_A 137 LKEFQDAIQMIEADAIAVHLNPA----Q---EVFQ---------PEGE--------PEYQIYALEKLRDISKELSVPIIV 192 (368)
T ss_dssp HHHHHHHHHHTTCSEEEEECCHH----H---HHHS---------SSCC--------CBCBTHHHHHHHHHHTTCSSCEEE
T ss_pred HHHHHHHHHHhcCCCeEEEecch----h---hhhC---------CCCC--------chhhHHHHHHHHHHHHHcCCCEEE
Confidence 677877654 5777777763210 0 0000 0000 0011 1366788888888999985
Q ss_pred -eCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 227 -FAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 227 -iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
...+|+ +++++..+.++|+|+|.|+..
T Consensus 193 K~vG~g~-s~~~A~~l~~aGad~I~V~g~ 220 (368)
T 3vkj_A 193 KESGNGI-SMETAKLLYSYGIKNFDTSGQ 220 (368)
T ss_dssp ECSSSCC-CHHHHHHHHHTTCCEEECCCB
T ss_pred EeCCCCC-CHHHHHHHHhCCCCEEEEeCC
Confidence 114555 799999999999999999543
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=84.36 E-value=2.4 Score=35.91 Aligned_cols=75 Identities=25% Similarity=0.215 Sum_probs=49.0
Q ss_pred cCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 41 DVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 41 ~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
++.+++.++.+.+.|+|.+ .+.+........++. ....+.++++++.+++|+++-..++ .+.+..+.++|+++|.
T Consensus 116 sv~t~~~~~~a~~~gaD~i-~~~~~f~~~~~~g~~--~~~~~~l~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 190 (221)
T 1yad_A 116 SVHSLEEAVQAEKEDADYV-LFGHVFETDCKKGLE--GRGVSLLSDIKQRISIPVIAIGGMT-PDRLRDVKQAGADGIA 190 (221)
T ss_dssp EECSHHHHHHHHHTTCSEE-EEECCC------------CHHHHHHHHHHHCCSCEEEESSCC-GGGHHHHHHTTCSEEE
T ss_pred EcCCHHHHHHHHhCCCCEE-EECCccccCCCCCCC--CCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCCEEE
Confidence 5667888898999999987 443221000000101 1125678888777899999877774 4677888889999995
|
| >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=84.35 E-value=16 Score=31.97 Aligned_cols=114 Identities=11% Similarity=0.021 Sum_probs=58.4
Q ss_pred HHHHHHHcCCcEEEeccCCcccccccCCCC-CCCCHHHHHHHHhhc-Ccceeecccc---------Cc----HHHHHHHH
Q 021609 47 QARVAEEAGACAVMALERVPADIRSQGGVA-RMSDPQLIKEIKQSV-TIPVMAKARI---------GH----FVEAQILE 111 (310)
Q Consensus 47 ~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~~~~~~i~~i~~~~-~iPv~vk~~~---------~~----~~~a~~~~ 111 (310)
.+..+.+.|+|.+ ++. .+.+.... .....+.+..+++.+ ++|+++-.|. .. .+..+.+.
T Consensus 37 ~~~~~~~~~~D~v-ElR-----vD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~~ll~~~~ 110 (257)
T 2yr1_A 37 EAEEVCRKQPDLL-EWR-----ADFFRAIDDQERVLATANGLRNIAGEIPILFTIRSEREGGQPIPLNEAEVRRLIEAIC 110 (257)
T ss_dssp HHHHHHHSCCSEE-EEE-----GGGCTTTTCHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCCCCSSCHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCEE-EEE-----eecccccCcHHHHHHHHHHHHHhccCCCEEEEEeecccCCCCCCCCHHHHHHHHHHHH
Confidence 4556677899976 542 11111000 000123555677776 8999985432 11 23345556
Q ss_pred HcC-CCEEEeCCCCCchhHHHHHHh-cCCCCcEEEecCC----H--HHH----HHHHHhCCCEEEEcC
Q 021609 112 AIG-IDYVDESEVLTPADEENHINK-HNFRIPFVCGCRN----L--GEA----LRRIREGAAMIRTKG 167 (310)
Q Consensus 112 ~aG-ad~Vi~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t----~--~ea----~~~~~~Gad~V~v~g 167 (310)
+.| +|+|..-..... .+.+.++. +..+..++++-|+ + ++. .++.+.|||++++-.
T Consensus 111 ~~g~~d~iDvEl~~~~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~gaDivKia~ 177 (257)
T 2yr1_A 111 RSGAIDLVDYELAYGE-RIADVRRMTEECSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVAV 177 (257)
T ss_dssp HHTCCSEEEEEGGGTT-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred HcCCCCEEEEECCCCh-hHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEEe
Confidence 678 999952211111 33333332 2345666666653 2 333 234567999988653
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=84.28 E-value=12 Score=34.13 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=35.2
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEcc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGS 253 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGs 253 (310)
+++.++++++..++||+ +...+.++.++.++++.| +|.|.+--
T Consensus 222 d~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~~l~~~~~d~v~~k~ 265 (354)
T 3jva_A 222 DLEGLKYVTSQVNTTIM--ADESCFDAQDALELVKKGTVDVINIKL 265 (354)
T ss_dssp CHHHHHHHHHHCSSEEE--ESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred hHHHHHHHHHhCCCCEE--EcCCcCCHHHHHHHHHcCCCCEEEECc
Confidence 46677888887889998 678899999999999764 78888753
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=84.27 E-value=12 Score=34.38 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=34.1
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEE
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFV 251 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~V 251 (310)
+++.++++++..++||. +...+.++.++.++++.| +|.|.+
T Consensus 224 d~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~~i~~~~~d~v~~ 265 (367)
T 3dg3_A 224 DVLSRRRLVGQLDMPFI--ADESVPTPADVTREVLGGSATAISI 265 (367)
T ss_dssp SHHHHHHHHHHCSSCEE--ECTTCSSHHHHHHHHHHTSCSEEEE
T ss_pred cHHHHHHHHHhCCCCEE--ecCCcCCHHHHHHHHHcCCCCEEEe
Confidence 36667788887889998 678999999999999776 788876
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=84.20 E-value=1.4 Score=36.83 Aligned_cols=74 Identities=28% Similarity=0.333 Sum_probs=48.5
Q ss_pred cCCCHHHHHHHHHcCCcEEEeccC-CcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 41 DVVTPEQARVAEEAGACAVMALER-VPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 41 ~~~~~~~A~~~~~~Ga~~i~~L~~-~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
++.+++.+..+.+.|++.+ .+++ .++..+. | ......+.++++++.+++|+++...++ .+.+..+.++|+|+|.
T Consensus 114 ~~~t~~e~~~~~~~g~d~i-~~~~~~~~~~~~--~-~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 114 SVYSLEEALEAEKKGADYL-GAGSVFPTKTKE--D-ARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp EESSHHHHHHHHHHTCSEE-EEECSSCC------C-CCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEE
T ss_pred ecCCHHHHHHHHhcCCCEE-EEcCCccCCCCC--C-CCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEE
Confidence 3567776777888999987 3332 1111111 1 112235778888877899999977766 4667778889999996
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=84.09 E-value=14 Score=32.69 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=50.5
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGG 231 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GG 231 (310)
+....+.|++.+.+.|.++-. .+++.++ -.++++.+.+..+- |++ ..|+
T Consensus 25 v~~li~~Gv~gl~v~GttGE~-------------------~~Ls~~E----------r~~v~~~~~~~~~g-vi~-Gvg~ 73 (286)
T 2r91_A 25 VKNITSKGVDVVFVAGTTGLG-------------------PALSLQE----------KMELTDAATSAARR-VIV-QVAS 73 (286)
T ss_dssp HHHHHHTTCCEEEETSTTTTG-------------------GGSCHHH----------HHHHHHHHHHHCSS-EEE-ECCC
T ss_pred HHHHHHCCCCEEEECccccCh-------------------hhCCHHH----------HHHHHHHHHHHhCC-EEE-eeCC
Confidence 455677899999988865422 2223221 12344444443322 653 4566
Q ss_pred CCCHHHHHH---HHHcCCCEEEEccccccC-CCHHHHHHHHHH
Q 021609 232 VATPADAAM---MMQLGCDGVFVGSGVFKS-GDPVKRAQAIVR 270 (310)
Q Consensus 232 I~t~~d~~~---~l~~GadgV~VGsai~~a-~dp~~~a~~l~~ 270 (310)
.++.+-+.. +.++|||++++....|.. +++....+-|..
T Consensus 74 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~ 116 (286)
T 2r91_A 74 LNADEAIALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRD 116 (286)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHH
Confidence 544443322 335799999999999976 666555543333
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=84.09 E-value=10 Score=33.85 Aligned_cols=93 Identities=17% Similarity=0.085 Sum_probs=57.3
Q ss_pred CCCCCCCHHHHHHHHhhcCcceeeccccC----c-HHHHHHHHHcCCCEEE-e---CC-CCCc--hh--HHHHHHhcCCC
Q 021609 74 GVARMSDPQLIKEIKQSVTIPVMAKARIG----H-FVEAQILEAIGIDYVD-E---SE-VLTP--AD--EENHINKHNFR 139 (310)
Q Consensus 74 G~~~~~~~~~i~~i~~~~~iPv~vk~~~~----~-~~~a~~~~~aGad~Vi-~---~~-~~~~--~~--~~~~i~~~~~~ 139 (310)
|+..+++.+.++++. .++.||++|-... . ..-++.+.+.|.+-|+ . +. ..+. .+ .+..+++...+
T Consensus 117 gA~~~~n~~LLr~va-~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~ 195 (285)
T 3sz8_A 117 PAFLARQTDLVVAIA-KAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGG 195 (285)
T ss_dssp CGGGTTCHHHHHHHH-HTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTTS
T ss_pred CccccCCHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCCC
Confidence 454578899999876 5899999986542 1 2335667778987663 1 11 1111 12 23334443336
Q ss_pred CcEEEe-cCC------------------HHHHHHHHHhCCC--EEEEcC
Q 021609 140 IPFVCG-CRN------------------LGEALRRIREGAA--MIRTKG 167 (310)
Q Consensus 140 i~~~v~-~~t------------------~~ea~~~~~~Gad--~V~v~g 167 (310)
++++.+ .|+ ..-++.+..+|+| +|-+|.
T Consensus 196 ~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~ 244 (285)
T 3sz8_A 196 CPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHP 244 (285)
T ss_dssp CCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEEES
T ss_pred CCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEecc
Confidence 888885 566 3345667789999 666674
|
| >3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus} | Back alignment and structure |
|---|
Probab=84.08 E-value=6.3 Score=34.54 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=28.2
Q ss_pred CCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEcccccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFK 257 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~ 257 (310)
+++|+ -+|+| +++++.+++ ..+.||++||++-++
T Consensus 203 ~vrIl--YGGSV-~~~N~~~l~~~~diDG~LVGgASL~ 237 (249)
T 3th6_A 203 KVRIQ--YGGSV-NAGNCKELGRKPDIDGFLVGGASLK 237 (249)
T ss_dssp HCCEE--ECSCC-CTTTHHHHHTSTTCCEEEECGGGGS
T ss_pred cccEE--EcCcc-CHhHHHHHhcCCCCCEEEeehHhhh
Confidence 47898 46888 588888877 679999999999996
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=84.04 E-value=5.5 Score=37.21 Aligned_cols=105 Identities=10% Similarity=0.161 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCCEEE-eCC----------CCCchhHHHHHHh--cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCC
Q 021609 105 VEAQILEAIGIDYVD-ESE----------VLTPADEENHINK--HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGT 171 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi-~~~----------~~~~~~~~~~i~~--~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~ 171 (310)
+.++.+.++|+|.|. .+- .+....+ +.+.+ ...|++++.++++.+.+..+.+. +|++.+..+.
T Consensus 160 ~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl-~~L~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~lkIgs~~-- 235 (385)
T 3nvt_A 160 AVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGL-KILKRVSDEYGLGVISEIVTPADIEVALDY-VDVIQIGARN-- 235 (385)
T ss_dssp HHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHH-HHHHHHHHHHTCEEEEECCSGGGHHHHTTT-CSEEEECGGG--
T ss_pred HHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHH-HHHHHHHHHcCCEEEEecCCHHHHHHHHhh-CCEEEECccc--
Confidence 456778889999995 221 1222222 33333 24689999999999888888777 8888875421
Q ss_pred cchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCC-CCHHHHHHHHH----cCC
Q 021609 172 GNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGV-ATPADAAMMMQ----LGC 246 (310)
Q Consensus 172 ~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI-~t~~d~~~~l~----~Ga 246 (310)
...+++++.+.+ .+.||++ +-|. .|++++..+.+ .|.
T Consensus 236 -----------------------------------~~n~~LL~~~a~-~gkPVil--k~G~~~t~~e~~~Ave~i~~~Gn 277 (385)
T 3nvt_A 236 -----------------------------------MQNFELLKAAGR-VDKPILL--KRGLSATIEEFIGAAEYIMSQGN 277 (385)
T ss_dssp -----------------------------------TTCHHHHHHHHT-SSSCEEE--ECCTTCCHHHHHHHHHHHHTTTC
T ss_pred -----------------------------------ccCHHHHHHHHc-cCCcEEE--ecCCCCCHHHHHHHHHHHHHcCC
Confidence 123567777766 5789983 5666 88888776653 476
Q ss_pred CEEEE
Q 021609 247 DGVFV 251 (310)
Q Consensus 247 dgV~V 251 (310)
.-+++
T Consensus 278 ~~i~L 282 (385)
T 3nvt_A 278 GKIIL 282 (385)
T ss_dssp CCEEE
T ss_pred CeEEE
Confidence 54444
|
| >3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=83.93 E-value=3.5 Score=39.17 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=23.4
Q ss_pred cchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccC
Q 021609 28 VGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALER 64 (310)
Q Consensus 28 ~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~ 64 (310)
.|++.....|+-....-.+.++.++++|+.++ .|+.
T Consensus 153 ~PviaD~dtGfG~~~~v~~~vk~~~~aGaaGi-~iED 188 (439)
T 3i4e_A 153 APIVADAEAGFGGVLNAFELMKAMIEAGASGV-HFED 188 (439)
T ss_dssp CCEEEECTTTTSSHHHHHHHHHHHHHHTCSEE-EEES
T ss_pred CCeEEECCCCCCccHHHHHHHHHHHHcCCEEE-EEeC
Confidence 55555555554333222367899999999997 7763
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=83.74 E-value=3.7 Score=37.05 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHH----H---hhcCcceeeccccCcHHHHHHHHH--cCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEI----K---QSVTIPVMAKARIGHFVEAQILEA--IGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i----~---~~~~iPv~vk~~~~~~~~a~~~~~--aGad 116 (310)
+.|+.+.+.||+.| +++. |.......+.++++ + +.+++|+++... ..+.++.+.+ +|++
T Consensus 41 ~~A~~~v~~GAdiI-DIg~---------g~~~v~~~eem~rvv~~i~~~~~~~~vpisIDT~--~~~V~eaaL~~~~Ga~ 108 (300)
T 3k13_A 41 SIARQQVEDGALVI-DVNM---------DDGLLDARTEMTTFLNLIMSEPEIARVPVMIDSS--KWEVIEAGLKCLQGKS 108 (300)
T ss_dssp HHHHHHHHTTCSEE-EEEC---------CCTTSCHHHHHHHHHHHHHTCHHHHTSCEEEECS--CHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHCCCCEE-EECC---------CCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEeCC--CHHHHHHHHHhcCCCC
Confidence 57888999999965 7751 11111112333332 2 446899998765 4477788888 7999
Q ss_pred EEE-eCCCCCch---hHHHHHHhcCCCCcE
Q 021609 117 YVD-ESEVLTPA---DEENHINKHNFRIPF 142 (310)
Q Consensus 117 ~Vi-~~~~~~~~---~~~~~i~~~~~~i~~ 142 (310)
.|- ++.....+ +..+.+++++..+.+
T Consensus 109 iINdIs~~~~d~~~~~~~~l~a~~ga~vV~ 138 (300)
T 3k13_A 109 IVNSISLKEGEEVFLEHARIIKQYGAATVV 138 (300)
T ss_dssp EEEEECSTTCHHHHHHHHHHHHHHTCEEEE
T ss_pred EEEeCCcccCChhHHHHHHHHHHhCCeEEE
Confidence 883 33322122 455566555443333
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=83.67 E-value=8.4 Score=35.32 Aligned_cols=42 Identities=5% Similarity=0.167 Sum_probs=36.2
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVG 252 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VG 252 (310)
+++..+++++..++||+ +.+.+.+++++.++++.| +|.|++-
T Consensus 227 ~~~~~~~l~~~~~iPI~--~dE~~~~~~~~~~~i~~~~~d~v~ik 269 (371)
T 2ps2_A 227 TWRECISLRRKTDIPII--YDELATNEMSIVKILADDAAEGIDLK 269 (371)
T ss_dssp SHHHHHHHHTTCCSCEE--ESTTCCSHHHHHHHHHHTCCSEEEEE
T ss_pred CHHHHHHHHhhCCCCEE--eCCCcCCHHHHHHHHHhCCCCEEEec
Confidence 67788888888899998 689999999999999765 8999874
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=83.60 E-value=7.6 Score=34.91 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=49.5
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFAA 229 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA~ 229 (310)
+....+.|++.+.+.|.++-. .+++.++- .++++.+.+. .++||++ ..
T Consensus 41 v~~li~~Gv~Gl~v~GtTGE~-------------------~~Ls~~Er----------~~v~~~~~~~~~gr~pvia-Gv 90 (307)
T 3s5o_A 41 LHKLGTFPFRGFVVQGSNGEF-------------------PFLTSSER----------LEVVSRVRQAMPKNRLLLA-GS 90 (307)
T ss_dssp HHHHTTSCCSEEEESSGGGTG-------------------GGSCHHHH----------HHHHHHHHHTSCTTSEEEE-EC
T ss_pred HHHHHHcCCCEEEECccccch-------------------hhCCHHHH----------HHHHHHHHHHcCCCCcEEE-ec
Confidence 444567799999988765421 22232211 2334444443 4689984 45
Q ss_pred CCCCCHHHHH---HHHHcCCCEEEEccccccC--CCHHHHHHHH
Q 021609 230 GGVATPADAA---MMMQLGCDGVFVGSGVFKS--GDPVKRAQAI 268 (310)
Q Consensus 230 GGI~t~~d~~---~~l~~GadgV~VGsai~~a--~dp~~~a~~l 268 (310)
|+.++.+.+. .+.++|||++++-...|-. .++....+-|
T Consensus 91 g~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f 134 (307)
T 3s5o_A 91 GCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHY 134 (307)
T ss_dssp CCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHH
Confidence 5554443332 3336899999999888753 3544444433
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=83.46 E-value=8.2 Score=35.65 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=34.3
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEE
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFV 251 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~V 251 (310)
+++..+++++.+++||+ +.+.+.++.++.++++.| +|.+.+
T Consensus 224 d~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~~i~~~~~d~v~i 265 (382)
T 2gdq_A 224 QPQDYAMLRSRLSVPVA--GGENMKGPAQYVPLLSQRCLDIIQP 265 (382)
T ss_dssp CHHHHHHHHTTCSSCEE--ECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred cHHHHHHHHhhCCCCEE--ecCCcCCHHHHHHHHHcCCCCEEec
Confidence 46778888887889998 678999999999999876 788776
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=83.42 E-value=14 Score=34.24 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=37.2
Q ss_pred cHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccc
Q 021609 209 PYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVF 256 (310)
Q Consensus 209 ~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~ 256 (310)
+++..+++++ ..++||+ +.+.+.+++++.++++.| +|.|++--.-.
T Consensus 234 d~~~~~~l~~~~~~iPI~--~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~ 281 (401)
T 2hzg_A 234 ALAAHAALAGRGARVRIA--GGEAAHNFHMAQHLMDYGRIGFIQIDCGRI 281 (401)
T ss_dssp CHHHHHHHHTTCCSSEEE--ECTTCSSHHHHHHHHHHSCCSEEEECHHHH
T ss_pred CHHHHHHHHhhCCCCCEE--ecCCcCCHHHHHHHHHCCCCCEEEeCcchh
Confidence 4677888888 7889998 789999999999999765 89998854333
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=83.42 E-value=19 Score=31.84 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=64.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc-CcHHHHHHHHHcCCCEEEe-CC-
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI-GHFVEAQILEAIGIDYVDE-SE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~-~~~~~a~~~~~aGad~Vi~-~~- 122 (310)
..++.+.++|+++++..+ .|.+ . .+.+.+..+..++.++.-... ...+.++.+.+.+.++|.. +.
T Consensus 116 ~f~~~~~~aGvdGvIipD-lp~e--e---------~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs~~ 183 (271)
T 3nav_A 116 DFYQRCQKAGVDSVLIAD-VPTN--E---------SQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRA 183 (271)
T ss_dssp HHHHHHHHHTCCEEEETT-SCGG--G---------CHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECCCC
T ss_pred HHHHHHHHCCCCEEEECC-CCHH--H---------HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEecc
Confidence 468899999999974443 1111 1 234444444556554322222 2356777777777777731 11
Q ss_pred ----C--CCch---hHHHHHHhcCCCCcEEE--ecCCHHHHHHHHHhCCCEEEEc
Q 021609 123 ----V--LTPA---DEENHINKHNFRIPFVC--GCRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 123 ----~--~~~~---~~~~~i~~~~~~i~~~v--~~~t~~ea~~~~~~Gad~V~v~ 166 (310)
. ..+. ++.+.+++. .++++.+ +++|.+++..+...|+|.+.+.
T Consensus 184 GvTG~~~~~~~~~~~~v~~vr~~-~~~Pv~vGfGIst~e~~~~~~~~gADgvIVG 237 (271)
T 3nav_A 184 GVTGAETKANMPVHALLERLQQF-DAPPALLGFGISEPAQVKQAIEAGAAGAISG 237 (271)
T ss_dssp --------CCHHHHHHHHHHHHT-TCCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred CCCCcccCCchhHHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 1 1122 444555443 3566665 4899999998999999999885
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=83.39 E-value=4.8 Score=36.03 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=49.8
Q ss_pred ecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCE
Q 021609 145 GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPV 224 (310)
Q Consensus 145 ~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPV 224 (310)
++...+-++.+.+.|++.|.+..+. +... +.... .......+.++.+++..++|+
T Consensus 27 ~~~~~~~a~~~~~~Ga~~I~~l~p~--~~~~-------------~~~~G----------~~~~~~~~~i~~I~~~~~iPv 81 (305)
T 2nv1_A 27 DVINAEQAKIAEEAGAVAVMALERV--PADI-------------RAAGG----------VARMADPTIVEEVMNAVSIPV 81 (305)
T ss_dssp EESSHHHHHHHHHTTCSEEEECCC----------------------CCC----------CCCCCCHHHHHHHHHHCSSCE
T ss_pred cCCHHHHHHHHHHcCCCEEEEcCCC--cchh-------------hhccC----------cccCCCHHHHHHHHHhCCCCE
Confidence 6667777888889999999433211 0000 00000 001224567778877788999
Q ss_pred EEeCCCCCCC--HHHHHHHHHcCCCEEEEccccc
Q 021609 225 VHFAAGGVAT--PADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 225 i~iA~GGI~t--~~d~~~~l~~GadgV~VGsai~ 256 (310)
+ ++++. .+++..+.++|||+|. ++..+
T Consensus 82 ~----~k~r~g~~~~~~~~~a~GAd~V~-~~~~l 110 (305)
T 2nv1_A 82 M----AKARIGHIVEARVLEAMGVDYID-ESEVL 110 (305)
T ss_dssp E----EEECTTCHHHHHHHHHHTCSEEE-ECTTS
T ss_pred E----ecccccchHHHHHHHHCCCCEEE-EeccC
Confidence 7 34444 6777788899999997 54433
|
| >3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A* | Back alignment and structure |
|---|
Probab=83.39 E-value=5.1 Score=34.55 Aligned_cols=84 Identities=18% Similarity=0.177 Sum_probs=55.5
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-----eC----CCCC-chhHHHHHHhcCCC-CcEEEecCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-----ES----EVLT-PADEENHINKHNFR-IPFVCGCRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-----~~----~~~~-~~~~~~~i~~~~~~-i~~~v~~~t~ 149 (310)
.+.++.+.+. ++++-+-.-+. ..++..+.++||++|. .. +++. ..++.+.++.+++. ....++.++.
T Consensus 94 l~A~~~L~~~-GI~vn~TlifS-~~QA~~Aa~AGa~yISPfvgRi~d~g~dG~~~v~~i~~~~~~~~~~T~IlaAS~Rn~ 171 (223)
T 3s1x_A 94 LRAIKTLSSE-HINTNCTLVFN-PIQALLAAKAGVTYVSPFVGRLDDIGEDGMQIIDMIRTIFNNYIIKTQILVASIRNP 171 (223)
T ss_dssp HHHHHHHHHT-TCCEEEEEECS-HHHHHHHHHTTCSEEEEBSHHHHHTTSCTHHHHHHHHHHHHHTTCCSEEEEBSCCSH
T ss_pred HHHHHHHHHC-CCcEEEEEeCC-HHHHHHHHHcCCeEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCCEEEEEeCCCH
Confidence 3445555433 66665544333 3567778889999993 11 1111 34556666666777 4556679999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 021609 150 GEALRRIREGAAMIRTK 166 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~ 166 (310)
.++..+..+|+|.+++.
T Consensus 172 ~~v~~aa~~G~d~~Tip 188 (223)
T 3s1x_A 172 IHVLRSAVIGADVVTVP 188 (223)
T ss_dssp HHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEeC
Confidence 99999999999999875
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=83.32 E-value=24 Score=31.30 Aligned_cols=67 Identities=9% Similarity=0.070 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH---HHHHHHHhhc--CcceeeccccCc----HHHHHHHHHcCCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDP---QLIKEIKQSV--TIPVMAKARIGH----FVEAQILEAIGID 116 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~---~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~~aGad 116 (310)
..+..+.+.|+++++.+. . .|-...+... +.++.+.+.+ .+||++...-.. .+.++.+.++|+|
T Consensus 28 ~lv~~li~~Gv~gl~~~G-t------tGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad 100 (294)
T 3b4u_A 28 AHARRCLSNGCDSVTLFG-T------TGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGAR 100 (294)
T ss_dssp HHHHHHHHTTCSEEEESS-T------TTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEECc-c------ccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCC
Confidence 567778899999985441 1 1101112211 2333344444 589998765432 3567788889999
Q ss_pred EEE
Q 021609 117 YVD 119 (310)
Q Consensus 117 ~Vi 119 (310)
+++
T Consensus 101 avl 103 (294)
T 3b4u_A 101 NIL 103 (294)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=83.32 E-value=1.7 Score=37.93 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=50.8
Q ss_pred ccCCCHHHHHHHHHcCCcEEEeccCC-cccccccCCCCCCCCHHHHHHHHhh--cCcceeeccccCcHHHHHHHHHcCCC
Q 021609 40 MDVVTPEQARVAEEAGACAVMALERV-PADIRSQGGVARMSDPQLIKEIKQS--VTIPVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 40 ~~~~~~~~A~~~~~~Ga~~i~~L~~~-~~~~~~~~G~~~~~~~~~i~~i~~~--~~iPv~vk~~~~~~~~a~~~~~aGad 116 (310)
.++.+++.+..+.+.|+|-+ .++|. ++..+.. . ....++.++++++. .++|+++-..++ .+.+..+.++|+|
T Consensus 140 ~S~ht~~Ea~~A~~~GaDyI-~vgpvf~T~tK~~--~-~~~gl~~l~~~~~~~~~~iPvvAiGGI~-~~ni~~~~~aGa~ 214 (243)
T 3o63_A 140 RSTHDPDQVAAAAAGDADYF-CVGPCWPTPTKPG--R-AAPGLGLVRVAAELGGDDKPWFAIGGIN-AQRLPAVLDAGAR 214 (243)
T ss_dssp EEECSHHHHHHHHHSSCSEE-EECCSSCCCC--------CCCHHHHHHHHTC---CCCEEEESSCC-TTTHHHHHHTTCC
T ss_pred EeCCCHHHHHHHhhCCCCEE-EEcCccCCCCCCC--c-chhhHHHHHHHHHhccCCCCEEEecCCC-HHHHHHHHHcCCC
Confidence 46678888888889999976 66542 2221111 0 12236788888876 589999877664 3668889999999
Q ss_pred EEE
Q 021609 117 YVD 119 (310)
Q Consensus 117 ~Vi 119 (310)
+|.
T Consensus 215 gva 217 (243)
T 3o63_A 215 RIV 217 (243)
T ss_dssp CEE
T ss_pred EEE
Confidence 995
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=83.31 E-value=9.8 Score=34.74 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=57.2
Q ss_pred HcCCcEEEecc-CCcccccccCCCCCCCCHHH----HHHHHhhcCcceeeccccCcH-----HHHHHHHH-cCCCEEEeC
Q 021609 53 EAGACAVMALE-RVPADIRSQGGVARMSDPQL----IKEIKQSVTIPVMAKARIGHF-----VEAQILEA-IGIDYVDES 121 (310)
Q Consensus 53 ~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~----i~~i~~~~~iPv~vk~~~~~~-----~~a~~~~~-aGad~Vi~~ 121 (310)
..+++.+ +|| .+|... ++......++. ++.+++.+..|+.+|...... ..++.+.+ .+++.+...
T Consensus 153 ~~~ad~i-elNiScPn~~---g~~~l~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~~~~~~~~~~~~~~~~~i~~i 228 (354)
T 3tjx_A 153 TEKGVIL-ELNLSCPNVP---GKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAAFDAAAEILNEFPKVQFITCI 228 (354)
T ss_dssp HHHCCEE-EEECC------------CTTSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHHHHHHHHHHHTCTTEEEEEEC
T ss_pred hcCCCEE-EeeeCCCCCc---chhhhccCHHHHHHHHHHHHHHhhcccccccCCCCCchhHHHHHHHHHhhcccchhhee
Confidence 3478876 888 454322 22223334444 445567789999999876531 22233333 344443211
Q ss_pred CC------------------------CC---ch----hHHHHHHhcCCCCcEE-E-ecCCHHHHHHHHHhCCCEEEEc
Q 021609 122 EV------------------------LT---PA----DEENHINKHNFRIPFV-C-GCRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 122 ~~------------------------~~---~~----~~~~~i~~~~~~i~~~-v-~~~t~~ea~~~~~~Gad~V~v~ 166 (310)
.. ++ .. +.+..+.+...+++++ + ++.|.++|.+.+.+||+.|-+.
T Consensus 229 ~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~ 306 (354)
T 3tjx_A 229 NSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQVG 306 (354)
T ss_dssp CCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHHTEEEEEEC
T ss_pred cccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhcCCCcEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 10 11 00 1222333323455443 3 4999999999999999999874
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=83.26 E-value=8.7 Score=35.77 Aligned_cols=42 Identities=14% Similarity=-0.039 Sum_probs=34.8
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
+++.++++++..++||. +...+.++.++.++++.|+|.+.+-
T Consensus 230 d~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~~i~~~~d~v~~k 271 (393)
T 4dwd_A 230 HVGAMGEVAQRLDITVS--AGEQTYTLQALKDLILSGVRMVQPD 271 (393)
T ss_dssp CHHHHHHHHHHCSSEEE--BCTTCCSHHHHHHHHHHTCCEECCC
T ss_pred cHHHHHHHHhhCCCCEE--ecCCcCCHHHHHHHHHcCCCEEEeC
Confidence 36677788887889998 7888999999999998778888764
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=83.20 E-value=5.7 Score=34.97 Aligned_cols=62 Identities=18% Similarity=0.151 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHH----HHhhcCcceeeccccCcHHHHHHHHHc--CCCEEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKE----IKQSVTIPVMAKARIGHFVEAQILEAI--GIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~----i~~~~~iPv~vk~~~~~~~~a~~~~~a--Gad~Vi 119 (310)
+.|+.+.+.||+.| +++. |+......+.+++ +++.+++|+++... ..+.++.+.++ |++.|-
T Consensus 29 ~~a~~~v~~GAdiI-DIg~---------g~~~v~~~ee~~rvv~~i~~~~~~pisIDT~--~~~v~~aAl~a~~Ga~iIN 96 (262)
T 1f6y_A 29 EWARRQEEGGARAL-DLNV---------GPAVQDKVSAMEWLVEVTQEVSNLTLCLDST--NIKAIEAGLKKCKNRAMIN 96 (262)
T ss_dssp HHHHHHHHHTCSEE-EEBC---------C----CHHHHHHHHHHHHHTTCCSEEEEECS--CHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHCCCcEE-EECC---------CCCCCChHHHHHHHHHHHHHhCCCeEEEeCC--CHHHHHHHHhhCCCCCEEE
Confidence 56888999999965 7751 2111122344444 35556899988665 34677888887 999984
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=83.17 E-value=15 Score=32.65 Aligned_cols=88 Identities=13% Similarity=0.189 Sum_probs=51.1
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGG 231 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GG 231 (310)
+....+.|++.+.+.|.++-. .+++.++ -.++++.+.+..+- |++ ..|+
T Consensus 26 v~~li~~Gv~gl~~~GttGE~-------------------~~Ls~eE----------r~~v~~~~~~~~~g-via-Gvg~ 74 (293)
T 1w3i_A 26 AENLIRKGIDKLFVNGTTGLG-------------------PSLSPEE----------KLENLKAVYDVTNK-IIF-QVGG 74 (293)
T ss_dssp HHHHHHTTCCEEEESSTTTTG-------------------GGSCHHH----------HHHHHHHHHTTCSC-EEE-ECCC
T ss_pred HHHHHHcCCCEEEECccccCh-------------------hhCCHHH----------HHHHHHHHHHHcCC-EEE-ecCC
Confidence 455677899999988865422 2222221 13345555554332 653 4566
Q ss_pred CCCHHHHHHHH---HcCCCEEEEccccccC-CCHHHHHHHHHH
Q 021609 232 VATPADAAMMM---QLGCDGVFVGSGVFKS-GDPVKRAQAIVR 270 (310)
Q Consensus 232 I~t~~d~~~~l---~~GadgV~VGsai~~a-~dp~~~a~~l~~ 270 (310)
.++.+.+..+. ++|||++++....|.. +++....+-|..
T Consensus 75 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~ 117 (293)
T 1w3i_A 75 LNLDDAIRLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKT 117 (293)
T ss_dssp SCHHHHHHHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHH
Confidence 54444433333 4699999999999976 666555543333
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=83.04 E-value=6 Score=35.84 Aligned_cols=110 Identities=14% Similarity=0.055 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC---cHHHHHHHHHcCCC---EEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG---HFVEAQILEAIGID---YVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~---~~~~a~~~~~aGad---~Vi 119 (310)
+.|+.+.+.||+.| +++...++.....-+ .....+.++.+++.+++|+++.+.-+ ..+.++.+.++|++ .|-
T Consensus 78 ~~A~~~v~~GAdiI-DIg~~StrP~~~~vs-~eee~~vV~~v~~~~~vplsI~DT~~~~~~~~V~eaal~aga~~k~iIN 155 (310)
T 2h9a_B 78 AWAKKCVEYGADIV-ALRLVSAHPDGQNRS-GAELAEVCKAVADAIDVPLMIIGCGVEEKDAEIFPVIGEALSGRNCLLS 155 (310)
T ss_dssp HHHHHHHHTTCSEE-EEECGGGCTTTTCCC-HHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEE
T ss_pred HHHHHHHHcCCcEE-EEeCccCCCCCCCCC-HHHHHHHHHHHHHhCCceEEEECCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 67889999999976 775221111110000 00012366667777899999833311 23567888999998 552
Q ss_pred -eCCCCCchhHHHHHHhcCCCCcEEEecC-CHHHHHH----HHHhCC
Q 021609 120 -ESEVLTPADEENHINKHNFRIPFVCGCR-NLGEALR----RIREGA 160 (310)
Q Consensus 120 -~~~~~~~~~~~~~i~~~~~~i~~~v~~~-t~~ea~~----~~~~Ga 160 (310)
.+. ....++...+.+++ .++++... +.+.+.+ +.++|.
T Consensus 156 dvs~-~~~~~~~~~aa~~g--~~vv~m~~~dv~~l~~~~~~a~~~Gi 199 (310)
T 2h9a_B 156 SATK-DNYKPIVATCMVHG--HSVVASAPLDINLSKQLNIMIMEMNL 199 (310)
T ss_dssp EECT-TTHHHHHHHHHHHT--CEEEEECSSCHHHHHHHHHHHHTTTC
T ss_pred ECCC-CccHHHHHHHHHhC--CCEEEEChhHHHHHHHHHHHHHHCCC
Confidence 332 34556666665544 34443332 4443333 345677
|
| >3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 | Back alignment and structure |
|---|
Probab=82.96 E-value=13 Score=27.98 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=43.1
Q ss_pred cHHHHHHHhh---cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC-CHHHHHHHHHHHHhccC
Q 021609 209 PYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG-DPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 209 ~~~~i~~i~~---~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~-dp~~~a~~l~~~i~~~~ 276 (310)
.+++++.+++ ..++|++++ .+-.+.+.+.++++.|+++++ .+.- ++....+.+...++.|.
T Consensus 66 g~~~~~~lr~~~~~~~~pii~~--s~~~~~~~~~~~~~~ga~~~l-----~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 66 GFEVMSAVRKPGANQHTPIVIL--TDNVSDDRAKQCMAAGASSVV-----DKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp HHHHHHHHHSSSTTTTCCEEEE--ETTCCHHHHHHHHHTTCSEEE-----ECCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCCCEEEE--eCCCCHHHHHHHHHcCCCEEE-----ECCCCcHHHHHHHHHHHHHHHH
Confidence 3667777776 357899875 455578999999999999986 4444 56666666666665543
|
| >3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A | Back alignment and structure |
|---|
Probab=82.77 E-value=12 Score=27.37 Aligned_cols=56 Identities=9% Similarity=0.191 Sum_probs=38.2
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+++++.+++..++|++++ .+-.+.....++++.|+++.+ .+.-++......+.+.+
T Consensus 62 ~~~~~~lr~~~~~~ii~~--t~~~~~~~~~~~~~~ga~~~l-----~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 62 VEVCREVRKKYDMPIIML--TAKDSEIDKVIGLEIGADDYV-----TKPFSTRELLARVKANL 117 (120)
T ss_dssp HHHHHHHHTTCCSCEEEE--EESSCHHHHHHHHHTTCCEEE-----EESCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEE--ECCCChHHHHHHHhCCcceeE-----cCCCCHHHHHHHHHHHH
Confidence 566777776667899875 444578888899999999986 45445555554444433
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=82.75 E-value=4.6 Score=35.89 Aligned_cols=82 Identities=11% Similarity=0.116 Sum_probs=53.2
Q ss_pred cEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC
Q 021609 141 PFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG 220 (310)
Q Consensus 141 ~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~ 220 (310)
.+++++...+-+..+.+.|++.+-+.. + ...+ .++ +.. .......+.++++++..
T Consensus 23 ~~i~~~~~~~~a~~~~~~Ga~~i~~~e--~--v~~~-~~~----------~~G----------~~~~~~~~~i~~i~~~~ 77 (297)
T 2zbt_A 23 GVIMDVTTPEQAVIAEEAGAVAVMALE--R--VPAD-IRA----------QGG----------VARMSDPKIIKEIMAAV 77 (297)
T ss_dssp EEEEEESSHHHHHHHHHHTCSEEEECS--S--CHHH-HHH----------TTC----------CCCCCCHHHHHHHHTTC
T ss_pred CeeeeechHHHHHHHHHCCCcEEEecc--c--cchH-HHh----------hcC----------CccCCCHHHHHHHHHhc
Confidence 445566667778888899999986632 1 1000 000 000 00123467788888888
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
++|+++ ..++.+.+++..+.++|+|+|
T Consensus 78 ~~Pvi~--~~~~~~~~~~~~~~~aGad~v 104 (297)
T 2zbt_A 78 SIPVMA--KVRIGHFVEAMILEAIGVDFI 104 (297)
T ss_dssp SSCEEE--EEETTCHHHHHHHHHTTCSEE
T ss_pred CCCeEE--EeccCCHHHHHHHHHCCCCEE
Confidence 899983 466767899999999999999
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=82.68 E-value=34 Score=32.61 Aligned_cols=169 Identities=17% Similarity=0.098 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccc--cccCCCCCCCCHHHHHHHHhh-cCcceeeccc----cCc--------HHHHHH
Q 021609 46 EQARVAEEAGACAVMALE-RVPADI--RSQGGVARMSDPQLIKEIKQS-VTIPVMAKAR----IGH--------FVEAQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~--~~~~G~~~~~~~~~i~~i~~~-~~iPv~vk~~----~~~--------~~~a~~ 109 (310)
+.+..+.+.|.+.| +.- |...+. +. ......+.++++++. -+.++.+-.+ .++ ..+++.
T Consensus 34 ~Ia~~L~~~Gv~~I-E~g~~atF~~~~r~----~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~~ 108 (464)
T 2nx9_A 34 PIAQQLDQIGYWSL-ECWGGATFDSCIRF----LGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVER 108 (464)
T ss_dssp GGHHHHHTSCCSEE-EEEETTHHHHHHHT----TCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEE-EeCcCccccchhhc----cCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHHHH
Confidence 57889999999976 331 110000 00 012234677777764 3555554322 121 345788
Q ss_pred HHHcCCCEEEeCCCCC----chhHHHHHHhcCCCCcEEEe-----cCCHHH----HHHHHHhCCCEEEEcCCCCCcchHH
Q 021609 110 LEAIGIDYVDESEVLT----PADEENHINKHNFRIPFVCG-----CRNLGE----ALRRIREGAAMIRTKGEAGTGNIIE 176 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~----~~~~~~~i~~~~~~i~~~v~-----~~t~~e----a~~~~~~Gad~V~v~g~~~~~~~~~ 176 (310)
+.++|+|.|-+....+ ..+.++.+++.+..+...++ ..+.+. ++++.++|++.|.+-=..+...
T Consensus 109 a~~~Gvd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~--- 185 (464)
T 2nx9_A 109 AVKNGMDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMAGILT--- 185 (464)
T ss_dssp HHHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCC---
T ss_pred HHhCCcCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcC---
Confidence 8999999985333222 22334444444433322221 124433 4445678998887642211111
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEe--CCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHF--AAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~i--A~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
|.. ..++++.+++..++|+-+= -..|.. ..+...++++||+.|-..
T Consensus 186 -------------------P~~----------v~~lv~~l~~~~~~~i~~H~Hnd~GlA-vAN~laAv~AGa~~VD~t 233 (464)
T 2nx9_A 186 -------------------PYA----------AEELVSTLKKQVDVELHLHCHSTAGLA-DMTLLKAIEAGVDRVDTA 233 (464)
T ss_dssp -------------------HHH----------HHHHHHHHHHHCCSCEEEEECCTTSCH-HHHHHHHHHTTCSEEEEB
T ss_pred -------------------HHH----------HHHHHHHHHHhcCCeEEEEECCCCChH-HHHHHHHHHhCCCEEEEe
Confidence 111 1345666665556776420 356763 677778889999977643
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=82.66 E-value=8.2 Score=35.90 Aligned_cols=42 Identities=10% Similarity=-0.043 Sum_probs=34.6
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVG 252 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VG 252 (310)
+++..+++++..++||+ +.+.+.++.++.++++.| +|.|.+-
T Consensus 259 d~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~~i~~~~~d~v~ik 301 (398)
T 2pp0_A 259 DIEGHAQLAAALDTPIA--TGEMLTSFREHEQLILGNASDFVQPD 301 (398)
T ss_dssp CHHHHHHHHHHCSSCEE--ECTTCCSHHHHHHHHHTTCCSEECCC
T ss_pred hHHHHHHHHhhCCCCEE--ecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 46777888887889998 678899999999999876 7887753
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=82.59 E-value=16 Score=32.38 Aligned_cols=88 Identities=15% Similarity=0.126 Sum_probs=50.7
Q ss_pred HHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCC
Q 021609 152 ALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGG 231 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GG 231 (310)
+....+.|++.+.+.|.++-. .+++.++ -.++++.+.+..+- |++ ..|+
T Consensus 26 v~~li~~Gv~gl~v~GtTGE~-------------------~~Ls~eE----------r~~v~~~~~~~~~g-Via-Gvg~ 74 (288)
T 2nuw_A 26 AKNLLEKGIDAIFVNGTTGLG-------------------PALSKDE----------KRQNLNALYDVTHK-LIF-QVGS 74 (288)
T ss_dssp HHHHHHTTCCEEEETSTTTTG-------------------GGSCHHH----------HHHHHHHHTTTCSC-EEE-ECCC
T ss_pred HHHHHHcCCCEEEECccccCh-------------------hhCCHHH----------HHHHHHHHHHHhCC-eEE-eeCC
Confidence 455677899999988865422 2223221 12344545544332 653 4555
Q ss_pred CCCHHHHHHH---HHcCCCEEEEccccccC-CCHHHHHHHHHH
Q 021609 232 VATPADAAMM---MQLGCDGVFVGSGVFKS-GDPVKRAQAIVR 270 (310)
Q Consensus 232 I~t~~d~~~~---l~~GadgV~VGsai~~a-~dp~~~a~~l~~ 270 (310)
.++.+.+..+ .++|||++++....|.. +++....+-|..
T Consensus 75 ~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~ 117 (288)
T 2nuw_A 75 LNLNDVMELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEE 117 (288)
T ss_dssp SCHHHHHHHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHH
Confidence 5444433322 24799999999999976 666555543433
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=82.35 E-value=15 Score=33.95 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=36.1
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-----CCEEEEcc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-----CDGVFVGS 253 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-----adgV~VGs 253 (310)
+++.++++++.+++||+ +.+.+.++.++.++++.| +|.|.+--
T Consensus 249 d~~~~~~l~~~~~iPIa--~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~ 296 (392)
T 1tzz_A 249 DYALQAALAEFYPGPMA--TGENLFSHQDARNLLRYGGMRPDRDWLQFDC 296 (392)
T ss_dssp CHHHHHHHTTTCCSCEE--ECTTCCSHHHHHHHHHHSCCCTTTCEECCCT
T ss_pred hHHHHHHHHhhCCCCEE--ECCCCCCHHHHHHHHHcCCCccCCcEEEECc
Confidence 46778888888899998 678999999999999877 88888643
|
| >3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C | Back alignment and structure |
|---|
Probab=81.86 E-value=13 Score=27.26 Aligned_cols=55 Identities=16% Similarity=0.326 Sum_probs=37.8
Q ss_pred HHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 210 YDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 210 ~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
+++++++++. .++|++++ .+-.+.+...++++.|+++.+ .+.-++......+.+.
T Consensus 62 ~~~~~~l~~~~~~~~~pii~~--s~~~~~~~~~~~~~~Ga~~~l-----~KP~~~~~L~~~i~~~ 119 (122)
T 3gl9_A 62 FTVLKKLQEKEEWKRIPVIVL--TAKGGEEDESLALSLGARKVM-----RKPFSPSQFIEEVKHL 119 (122)
T ss_dssp HHHHHHHHTSTTTTTSCEEEE--ESCCSHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCEEEE--ecCCchHHHHHHHhcChhhhc-----cCCCCHHHHHHHHHHH
Confidence 6677777653 46899865 455578999999999999985 5544565555444433
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=81.73 E-value=3.4 Score=38.15 Aligned_cols=86 Identities=15% Similarity=0.118 Sum_probs=57.1
Q ss_pred HHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEec-CCHHHHHHHHHhCCCEEEEcCCCCC--cchHHHHH
Q 021609 104 FVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCGC-RNLGEALRRIREGAAMIRTKGEAGT--GNIIEAVR 179 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~~-~t~~ea~~~~~~Gad~V~v~g~~~~--~~~~~~~~ 179 (310)
..+++.+.++|+|.|- .....+..+....+++. ..+|+.+|. .+...+..+++.|+|.+.+++.-.. ..+.+.++
T Consensus 49 v~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~-~~vPlvaDiHf~~~lal~a~e~G~dklRINPGNig~~~~~~~vv~ 127 (366)
T 3noy_A 49 LNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKK-SPMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKEEIVREIVE 127 (366)
T ss_dssp HHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHH-CSSCEEEECCSCHHHHHHHHHTTCSEEEECHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhc-CCCCEEEeCCCCHHHHHHHHHhCCCeEEECCcccCchhHHHHHHH
Confidence 4667888999999994 43333344445555443 579999997 6889999999999999999853111 11234555
Q ss_pred HHHhhccceEe
Q 021609 180 HVRSVMGDIRV 190 (310)
Q Consensus 180 ~~r~~~~~~~~ 190 (310)
..++.-.-+|+
T Consensus 128 ~ak~~~~piRI 138 (366)
T 3noy_A 128 EAKRRGVAVRI 138 (366)
T ss_dssp HHHHHTCEEEE
T ss_pred HHHHcCCCEEE
Confidence 55554444555
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=81.24 E-value=21 Score=31.85 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCCCCCchhHHHHHHhcCCCCcEEEec---CCHHHHHHH-
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESEVLTPADEENHINKHNFRIPFVCGC---RNLGEALRR- 155 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~~~~~~~~~~~i~~~~~~i~~~v~~---~t~~ea~~~- 155 (310)
++.++++++.+++|+.--.. +.+.++.+.+. +|.+ +.+..+...++.+.+.+ .+.++++.- .|.+|...+
T Consensus 80 L~~L~~~~~e~Glp~~Tev~--d~~~v~~l~~~-vd~lqIgA~~~~n~~LLr~va~--~gkPVilK~G~~~t~~ei~~av 154 (285)
T 3sz8_A 80 LKIFAEVKARFGVPVITDVH--EAEQAAPVAEI-ADVLQVPAFLARQTDLVVAIAK--AGKPVNVKKPQFMSPTQLKHVV 154 (285)
T ss_dssp HHHHHHHHHHHCCCEEEECC--SGGGHHHHHTT-CSEEEECGGGTTCHHHHHHHHH--TSSCEEEECCTTSCGGGTHHHH
T ss_pred HHHHHHHHHhcCCeEEEEeC--CHHHHHHHHHh-CCEEEECccccCCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHHH
Confidence 45677777888999985443 23456666677 9988 45555566666666553 456666652 255554443
Q ss_pred ---HHhCCC-EEEEc
Q 021609 156 ---IREGAA-MIRTK 166 (310)
Q Consensus 156 ---~~~Gad-~V~v~ 166 (310)
.+.|.+ ++-++
T Consensus 155 e~i~~~Gn~~i~L~e 169 (285)
T 3sz8_A 155 SKCGEVGNDRVMLCE 169 (285)
T ss_dssp HHHHHTTCCCEEEEE
T ss_pred HHHHHcCCCcEEEEe
Confidence 344664 44444
|
| >3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=81.11 E-value=24 Score=29.85 Aligned_cols=58 Identities=17% Similarity=0.273 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
+++++++++..++||+++ .+-.+.+.+.+++++||++.+ .+.-++......+...+..
T Consensus 97 ~~l~~~lr~~~~~~iI~l--t~~~~~~~~~~a~~~Ga~~yl-----~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 97 GDVVQRLRKNSALPIIVL--TARDTVEEKVRLLGLGADDYL-----IKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp HHHHHHHHTTCCCCEEEE--ESCCSHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCCEEEE--ECCCCHHHHHHHHHCCCcEEE-----ECCCCHHHHHHHHHHHHhh
Confidence 567777777667999975 555688999999999999986 4555666666656555543
|
| >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=81.07 E-value=13 Score=30.03 Aligned_cols=37 Identities=30% Similarity=0.555 Sum_probs=24.6
Q ss_pred HHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 212 LVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 212 ~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+++.+++. .++||++ ||.-..++...+.+.|+|++..
T Consensus 89 ~i~~L~~~g~~~i~v~v---GG~~~~~~~~~l~~~G~d~v~~ 127 (161)
T 2yxb_A 89 LMAKLRELGADDIPVVL---GGTIPIPDLEPLRSLGIREIFL 127 (161)
T ss_dssp HHHHHHHTTCTTSCEEE---EECCCHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHhcCCCCCEEEE---eCCCchhcHHHHHHCCCcEEEC
Confidence 45555554 2588873 5655667777777899998763
|
| >3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A* | Back alignment and structure |
|---|
Probab=80.99 E-value=28 Score=30.49 Aligned_cols=109 Identities=14% Similarity=0.140 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~- 122 (310)
++|..++++| ++| +.|. +|.|. -...++..+++.+.+|+=+-... ..+..+.+.+.--+.|. .++
T Consensus 29 ~aA~~ae~aG-dgITvHlR---eDrRH-------I~d~Dv~~L~~~~~~~lNlE~a~-t~emi~ial~~kP~~vtLVPEk 96 (260)
T 3o6c_A 29 EAAFIVARHG-DQITLHVR---EDRRH-------AQDFDLENIIKFCKSPVNLECAL-NDEILNLALKLKPHRVTLVPEK 96 (260)
T ss_dssp HHHHHHHHHS-SEEEEECC---TTCSS-------SCHHHHHHHHHHCSSCEEEEECS-CHHHHHHHHHHCCSEEEECCCS
T ss_pred HHHHHHHHhC-CeEEEeeC---CCccc-------CCHHHHHHHHHHcCCCEEeecCC-CHHHHHHHHHcCCCEEEECCCC
Confidence 5677788999 998 6773 11121 12578888888888777654443 34677889999999983 332
Q ss_pred ----------CCCc---hhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcC
Q 021609 123 ----------VLTP---ADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 123 ----------~~~~---~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g 167 (310)
++.. .+.++.++..+..+..+++ .+.+....+.+.|+++|-+|.
T Consensus 97 reE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFID-pd~~qi~aA~~~GAd~IELhT 153 (260)
T 3o6c_A 97 REELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN-PSLEDIEKSKILKAQFIELHT 153 (260)
T ss_dssp GGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEEC-SCHHHHHHHHHTTCSEEEECC
T ss_pred CCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCCCEEEEec
Confidence 1122 3344444444555667777 467778888899999999873
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=80.96 E-value=3.1 Score=41.53 Aligned_cols=85 Identities=24% Similarity=0.275 Sum_probs=54.3
Q ss_pred HHHHHHHHcCCcEEEecc------CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC-CCEE
Q 021609 46 EQARVAEEAGACAVMALE------RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG-IDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG-ad~V 118 (310)
+.++.++++|++.| .+- +.|..... .+ .....+.++++++.+++||+....+...+.++.+.+.| +|.|
T Consensus 232 ~~a~~l~~~g~d~i-~v~~~~~~~~~~~~~~~-~~--~~~~~~~~~~i~~~~~iPvi~~Ggi~~~~~a~~~l~~g~aD~V 307 (671)
T 1ps9_A 232 ELAQAIEAAGATII-NTGIGWHEARIPTIATP-VP--RGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMV 307 (671)
T ss_dssp HHHHHHHHHTCSEE-EEEECBTTCSSCSSSTT-SC--TTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHhcCCCEE-EcCCCcccccccccccc-CC--cchHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHcCCCCEE
Confidence 56888999999987 331 11110000 00 11235788899999999999988776667888888887 9999
Q ss_pred E-eCCCCCchhHHHHHH
Q 021609 119 D-ESEVLTPADEENHIN 134 (310)
Q Consensus 119 i-~~~~~~~~~~~~~i~ 134 (310)
- +...+..+++...++
T Consensus 308 ~~gR~~l~~P~l~~k~~ 324 (671)
T 1ps9_A 308 SMARPFLADAELLSKAQ 324 (671)
T ss_dssp EESTHHHHCTTHHHHHH
T ss_pred EeCHHHHhCcHHHHHHH
Confidence 4 333333344544443
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=80.93 E-value=2.9 Score=38.65 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+++..+.++|++.+ .+- .|. ....+.+.+|++.+++|+++..-+++ ..+..+.++|+|.+
T Consensus 50 ~Qi~~l~~aG~diV-Rva-vp~----------~~~a~al~~I~~~~~vPlvaDiHf~~-~lal~a~e~G~dkl 109 (366)
T 3noy_A 50 NQIKRLYEAGCEIV-RVA-VPH----------KEDVEALEEIVKKSPMPVIADIHFAP-SYAFLSMEKGVHGI 109 (366)
T ss_dssp HHHHHHHHTTCCEE-EEE-CCS----------HHHHHHHHHHHHHCSSCEEEECCSCH-HHHHHHHHTTCSEE
T ss_pred HHHHHHHHcCCCEE-EeC-CCC----------hHHHHHHHHHHhcCCCCEEEeCCCCH-HHHHHHHHhCCCeE
Confidence 57889999999965 431 111 11156888889999999999865453 56777899999998
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 310 | ||||
| d1znna1 | 254 | c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase Pd | 1e-140 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 2e-29 | |
| d1hg3a_ | 224 | c.1.1.1 (A:) Triosephosphate isomerase {Archaeon P | 9e-22 | |
| d1wv2a_ | 243 | c.1.31.1 (A:) Thiazole biosynthesis protein ThiG { | 1e-19 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 2e-15 | |
| d1xm3a_ | 251 | c.1.31.1 (A:) Thiazole biosynthesis protein ThiG { | 2e-11 | |
| d1w0ma_ | 226 | c.1.1.1 (A:) Triosephosphate isomerase {Thermoprot | 3e-07 | |
| d2tpsa_ | 226 | c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus | 1e-05 | |
| d1xi3a_ | 206 | c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon | 1e-05 | |
| d1q6oa_ | 213 | c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarbo | 5e-05 | |
| d1gtea2 | 312 | c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas | 2e-04 | |
| d1a53a_ | 247 | c.1.2.4 (A:) Indole-3-glycerophosphate synthase, I | 3e-04 | |
| d1rd5a_ | 261 | c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Ze | 0.001 | |
| d1ep3a_ | 311 | c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco | 0.002 |
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Score = 394 bits (1013), Expect = e-140
Identities = 171/254 (67%), Positives = 212/254 (83%)
Query: 35 RGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIP 94
+GGVIMDVV EQA++AE AGA AVMALERVPADIR+ GGVARM+DP +I+E+ +V+IP
Sbjct: 1 KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIP 60
Query: 95 VMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALR 154
VMAK RIGH+VEA++LEA+G+DY+DESEVLTPADEE HI+K F +PFVCGCR+LGEA R
Sbjct: 61 VMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAAR 120
Query: 155 RIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVM 214
RI EGA+M+RTKGE GTGNI+EAVRH+R V IR + NM +DE+ AK++ AP +++
Sbjct: 121 RIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLR 180
Query: 215 QTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274
+ K+LGRLPVV+FAAGGV TPADAA+MM LG DGVFVGSG+FKS +P K A+AIV A TH
Sbjct: 181 EIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTH 240
Query: 275 YSDPEVLAEVSCGL 288
Y D E++A +S GL
Sbjct: 241 YEDYELIAHLSKGL 254
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 109 bits (274), Expect = 2e-29
Identities = 40/247 (16%), Positives = 88/247 (35%), Gaps = 22/247 (8%)
Query: 27 KVGLAQMLRGGVIMDV-VTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIK 85
K L + L+GG+I+ P + +E G +MA A + R + + IK
Sbjct: 4 KEKLMEQLKGGIIVSCQALPGEPLYSETGGIMPLMAK----AAQEAGAVGIRANSVRDIK 59
Query: 86 EIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCG 145
EI+ +P++ + + + + +EV A + +
Sbjct: 60 EIQAITDLPIIGIIKKDYPPQEPFI------TATMTEVDQLAALNIAVIAMDCTKRDRHD 113
Query: 146 CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205
++ +R+++E + T + D ++++
Sbjct: 114 GLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGI---DFVGTTLSG---YTPYSRQ 167
Query: 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRA 265
A P +++ + V+ A G + +P +A + LG G+ VG + P + A
Sbjct: 168 EAGPDVALIEALCKAGIAVI--AEGKIHSPEEAKKINDLGVAGIVVGGAI---TRPKEIA 222
Query: 266 QAIVRAV 272
+ + A+
Sbjct: 223 ERFIEAL 229
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Score = 89.3 bits (220), Expect = 9e-22
Identities = 41/222 (18%), Positives = 75/222 (33%), Gaps = 16/222 (7%)
Query: 53 EAGACAVMALERVPADIRSQGGVARMSDPQLI--KEIKQSVTIPVMAKARIGHFVEAQIL 110
EA + + + + + GV + PQL+ + I +SV IPV A+ +
Sbjct: 17 EATGKRALEIAKAAEKVYKETGVTIVVAPQLVDLRMIAESVEIPVFAQHIDPIKPGSHTG 76
Query: 111 EAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG 170
+ + V T + + + +G L + + A
Sbjct: 77 HVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVG--LMTMVCSNNPAVSAAVAA 134
Query: 171 TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAG 230
AV + I V + + I +LV + ++
Sbjct: 135 LNPDYVAVEPPELIGTGIPVSKAK--------PEVITNTVELVKKVNPEVKV----LCGA 182
Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
G++T D ++LG GV + SGV K+ DP K +V +
Sbjct: 183 GISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSGI 224
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Score = 83.8 bits (207), Expect = 1e-19
Identities = 30/243 (12%), Positives = 57/243 (23%), Gaps = 71/243 (29%)
Query: 30 LAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQ 89
L ++ + A EA +A E + + V ++
Sbjct: 57 LLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVET 116
Query: 90 SVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNL 149
+ K V + R GC
Sbjct: 117 LKAAEQLVKDGFDVMVYT------------------------SDDPIIARQLAEIGC--- 149
Query: 150 GEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 209
+ + + ++ +
Sbjct: 150 -----------IAVMPLAGLIGSGLGICNPYNLRIILEEA-------------------- 178
Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269
V GV T +DAA+ M+LGC+ V + + + + DPV A+A+
Sbjct: 179 -------------KVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMK 225
Query: 270 RAV 272
A+
Sbjct: 226 HAI 228
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 71.8 bits (175), Expect = 2e-15
Identities = 43/259 (16%), Positives = 75/259 (28%), Gaps = 58/259 (22%)
Query: 33 MLRGGVIMDVVTPEQARVAE---EAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQ 89
ML G+I+ QA E + + MAL A R + + I IK+
Sbjct: 2 MLPHGLIVSC----QALPDEPLHSSFIMSKMAL----AAYEGGAVGIRANTKEDILAIKE 53
Query: 90 SVTIPVMAKARIGHFVEAQILEA----------IGIDYV------DESEVLTPADEENHI 133
+V +PV+ + + + A + + + T + ++I
Sbjct: 54 TVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYI 113
Query: 134 NKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193
H + + + EA R G I T T + +
Sbjct: 114 RTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDF--------- 164
Query: 194 MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
+ Q V+ A G V TP +M LG VG
Sbjct: 165 -----------------QFLKDVLQSVDAKVI--AEGNVITPDMYKRVMDLGVHCSVVGG 205
Query: 254 GVFKSGDPVKRAQAIVRAV 272
+ P + + V+ +
Sbjct: 206 AI---TRPKEITKRFVQVM 221
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Score = 61.0 bits (148), Expect = 2e-11
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 219 LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274
+ + V G+ +P DAA M+LG DGV + + V + DPVK A+A+ AV
Sbjct: 173 IEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVEA 228
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Score = 48.0 bits (113), Expect = 3e-07
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275
G+ + D A ++LG GV + S K+ DP + + + ++
Sbjct: 179 GAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSEL 225
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Score = 43.3 bits (101), Expect = 1e-05
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250
L + E + + + +Q +P+V T +AA ++Q G DGV
Sbjct: 141 LGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGG---ITIDNAAPVIQAGADGVS 197
Query: 251 VGSGVFKSGDPVKRAQAIVRAVTHY 275
+ S + ++ DP A+ + Y
Sbjct: 198 MISAISQAEDPESAARKFREEIQTY 222
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Score = 42.9 bits (100), Expect = 1e-05
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272
+ +++ + A G +A +++ G DG+ V S V + D K + + + V
Sbjct: 142 LEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIV 201
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (96), Expect = 5e-05
Identities = 15/135 (11%), Positives = 34/135 (25%), Gaps = 18/135 (13%)
Query: 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ 218
A + A A+ + GD+++ + A +V +
Sbjct: 78 NADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSR 137
Query: 219 LGRLPVVHF------------------AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD 260
+ V + G D + + G + +
Sbjct: 138 DAQAAGVAWGEADITAIKRLSDMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAAS 197
Query: 261 PVKRAQAIVRAVTHY 275
PV+ A+ R++
Sbjct: 198 PVEAARQFKRSIAEL 212
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 40.3 bits (93), Expect = 2e-04
Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 4/127 (3%)
Query: 135 KHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNI--IEAVRHVRSVMGDIRVLR 192
+ +IPF + I A G T + + ++ + + +
Sbjct: 167 RQAVQIPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGK 226
Query: 193 NMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252
V A + A + + L P++ A GG+ + + G + V
Sbjct: 227 RTTYGGVSGTAIRPIALRAVTTIARALPGFPIL--ATGGIDSAESGLQFLHSGASVLQVC 284
Query: 253 SGVFKSG 259
S V
Sbjct: 285 SAVQNQD 291
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 39.3 bits (91), Expect = 3e-04
Identities = 31/210 (14%), Positives = 70/210 (33%), Gaps = 28/210 (13%)
Query: 76 ARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE--AIGIDYVDESEVLTPADEENHI 133
+ + +I E K+ P ++ +E A+G+ + E + + E
Sbjct: 40 NKRNITAIIAEYKRKS--PSGLDVERDPIEYSKFMERYAVGLSILTEEKYFNGSYETLRK 97
Query: 134 NKHNFRIPFVC-----GCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDI 188
+ IP + + +A ++ + + + RS +
Sbjct: 98 IASSVSIPILMKDFIVKESQIDDA--YNLGADTVLLIVKILTERELESLLEYARSYG--M 153
Query: 189 RVLRNMDDDEVFTFAKKIAAP------YDLVMQTKQLG-------RLP--VVHFAAGGVA 233
L ++D+ A +I A DL +P VV A G++
Sbjct: 154 EPLIEINDENDLDIALRIGARFIGINSRDLETLEINKENQRKLISMIPSNVVKVAESGIS 213
Query: 234 TPADAAMMMQLGCDGVFVGSGVFKSGDPVK 263
+ + +LG + +GS + ++ + +K
Sbjct: 214 ERNEIEELRKLGVNAFLIGSSLMRNPEKIK 243
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Score = 37.1 bits (85), Expect = 0.001
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270
L+ + K++ PV G++ P + Q G DGV +GS A+VR
Sbjct: 190 SLIQEVKKVTNKPVA--VGFGISKPEHVKQIAQWGADGVIIGS-------------AMVR 234
Query: 271 AVTHYSDPE 279
+ + P+
Sbjct: 235 QLGEAASPK 243
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Score = 36.9 bits (84), Expect = 0.002
Identities = 13/56 (23%), Positives = 19/56 (33%)
Query: 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264
P L + + + + GGVA D M G V VG+ F +
Sbjct: 227 PVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPK 282
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 310 | |||
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 100.0 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 99.88 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 99.85 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 99.85 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 99.84 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.77 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.71 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 99.66 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 99.65 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 99.54 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 99.54 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 99.53 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.53 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.51 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.5 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 99.49 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 99.49 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 99.49 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 99.45 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 99.45 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 99.41 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 99.41 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 99.4 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 99.35 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 99.32 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 99.31 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 99.21 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 99.17 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 99.15 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 99.12 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 99.08 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 99.02 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 99.01 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 98.95 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 98.92 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 98.91 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 98.9 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 98.89 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 98.83 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 98.8 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 98.8 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 98.79 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 98.77 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 98.73 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 98.65 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 98.63 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 98.62 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 98.53 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 98.5 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 98.45 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 98.45 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 98.38 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 98.36 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 98.35 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 98.31 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 98.3 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 98.09 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 97.94 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 97.89 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 97.86 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 97.75 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 97.55 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 97.51 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 97.49 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.47 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.34 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 97.34 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 97.33 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 97.33 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 97.32 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 97.25 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 97.23 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 97.22 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.2 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 97.19 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 97.09 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 96.99 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 96.97 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 96.92 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 96.9 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 96.88 | |
| d1vqta1 | 198 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 96.86 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 96.81 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 96.77 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 96.77 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 96.76 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 96.75 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 96.72 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 96.68 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.63 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.63 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 96.58 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.43 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 96.39 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.32 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 96.26 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 96.02 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 95.97 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 95.88 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 95.83 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 95.82 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 95.65 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 95.55 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 95.38 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 95.36 | |
| d1vcva1 | 226 | Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro | 95.12 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 94.55 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 94.5 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 94.2 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 93.89 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 93.87 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 93.73 | |
| d2fdsa1 | 324 | Protozoan orotidine monophosphate decarboxylase {P | 93.62 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 93.55 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 93.34 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 92.95 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 92.75 | |
| d1xhfa1 | 121 | Aerobic respiration control protein ArcA, N-termin | 92.63 | |
| d1dqwa_ | 267 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 92.37 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 92.33 | |
| d2a4aa1 | 256 | Fructose-1,6-bisphosphate aldolase {Plasmodium yoe | 92.23 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 92.13 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 92.03 | |
| d1zh2a1 | 119 | Transcriptional regulatory protein KdpE, N-termina | 91.75 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 91.7 | |
| d1s8na_ | 190 | Probable two-component system transcriptional regu | 91.68 | |
| d2a9pa1 | 117 | DNA-binding response regulator MicA, N-terminal do | 91.67 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 91.26 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 91.01 | |
| d1muma_ | 289 | 2-methylisocitrate lyase {Escherichia coli [TaxId: | 90.74 | |
| d1qkka_ | 140 | Transcriptional regulatory protein DctD, receiver | 90.44 | |
| d1l6sa_ | 323 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 90.12 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 89.98 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 89.81 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 89.77 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 89.69 | |
| d1s2wa_ | 275 | Phosphoenolpyruvate mutase {Blue mussel (Mytilus e | 89.4 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 89.11 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 88.95 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 88.8 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 88.64 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 88.56 | |
| d1ny5a1 | 137 | Transcriptional activator sigm54 (NtrC1), N-termin | 87.95 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 87.93 | |
| d2pl1a1 | 119 | PhoP receiver domain {Escherichia coli [TaxId: 562 | 87.9 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 87.68 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 87.52 | |
| d1k66a_ | 149 | Response regulator for cyanobacterial phytochrome | 87.29 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 86.95 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 86.9 | |
| d1vlia2 | 295 | Spore coat polysaccharide biosynthesis protein Sps | 86.51 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 86.12 | |
| d1gzga_ | 329 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 86.07 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 85.53 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 85.23 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 84.98 | |
| d1p2fa2 | 120 | Response regulator DrrB {Thermotoga maritima [TaxI | 84.92 | |
| d1h7na_ | 340 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 84.76 | |
| d2c1ha1 | 319 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 84.65 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 84.47 | |
| d1kgsa2 | 122 | PhoB receiver domain {Thermotoga maritima [TaxId: | 84.38 | |
| d1ajza_ | 282 | Dihydropteroate synthetase {Escherichia coli [TaxI | 84.24 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 84.19 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 84.13 | |
| d1zesa1 | 121 | PhoB receiver domain {Escherichia coli [TaxId: 562 | 84.09 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 83.78 | |
| d1eyea_ | 270 | Dihydropteroate synthetase {Mycobacterium tubercul | 83.77 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 83.21 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 83.2 | |
| d1zgza1 | 120 | TorCAD operon transcriptional regulator TorD, N-te | 82.85 | |
| d1k68a_ | 140 | Response regulator for cyanobacterial phytochrome | 82.79 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 81.94 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 81.79 | |
| d1i3ca_ | 144 | Response regulator for cyanobacterial phytochrome | 81.69 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 81.39 | |
| d1jbea_ | 128 | CheY protein {Escherichia coli [TaxId: 562]} | 81.24 | |
| d1vkfa_ | 172 | Glycerol uptake operon antiterminator-related prot | 81.11 | |
| d1w25a2 | 153 | Response regulator PleD, receiver domain {Caulobac | 80.58 | |
| d2ffca1 | 332 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 80.47 | |
| d1ys7a2 | 121 | Transcriptional regulatory protein PrrA, N-termina | 80.45 | |
| d1peya_ | 119 | Sporulation response regulator Spo0F {Bacillus sub | 80.42 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 80.33 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 80.25 |
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=1.7e-33 Score=242.17 Aligned_cols=253 Identities=67% Similarity=1.079 Sum_probs=225.1
Q ss_pred hCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 35 RGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 35 ~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
|+|.|++++++++|+.++++||..++.|++.|.++|..+|.+++.++..++++.+.+.+|+..|.+++++-.+|.+.+.|
T Consensus 1 kgGvimDv~~~eqA~iAe~aGAvaVmaLervpadiR~~GGvaRm~dp~~i~ei~~~vsipvmak~righ~~eaqiLe~~~ 80 (254)
T d1znna1 1 KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALG 80 (254)
T ss_dssp CCEEEEEESSHHHHHHHHHHTCSEEEECC---------CCCCCCCCHHHHHHHHHHCSSCEEEEEETTCHHHHHHHHHHT
T ss_pred CCceEEeccCHHHHHHhhccCceeEeeeccCCHHHHhcCCcccCCCHHHHHHHHHhcccccccccCCCchHHHHhHHhhC
Confidence 58999999999999999999999998999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeeccc
Q 021609 115 IDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 115 ad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
+|++..+..+++.+..+.+.++.+.++++.+++|+-++.+-...|+.++...|..+++++.++++++|.+....+.+..+
T Consensus 81 vd~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m 160 (254)
T d1znna1 81 VDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNM 160 (254)
T ss_dssp CSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence 99998888888888888888878999999999999999998899999999999989999999999999988887777777
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
+.+.++.++++.+.+++++.++.+..++||..|+.|||.||.|+..++++|||||.|||+|++++||..+++.|+.++.+
T Consensus 161 ~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~dP~~~a~A~~~Avt~ 240 (254)
T d1znna1 161 SEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTH 240 (254)
T ss_dssp CGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHc
Confidence 77777778888899999999998766666655589999999999999999999999999999999999999999999999
Q ss_pred cCChhhhhhhhhh
Q 021609 275 YSDPEVLAEVSCG 287 (310)
Q Consensus 275 ~~~~~~~~~~~~~ 287 (310)
|.+|+.+.++++.
T Consensus 241 ~~dp~~~~~~s~~ 253 (254)
T d1znna1 241 YEDYELIAHLSKG 253 (254)
T ss_dssp TTCHHHHHHHTTT
T ss_pred cCCHHHHHHhcCC
Confidence 9999999988864
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=9.5e-22 Score=173.20 Aligned_cols=191 Identities=19% Similarity=0.221 Sum_probs=153.6
Q ss_pred CcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCC
Q 021609 36 GGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGI 115 (310)
Q Consensus 36 ~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGa 115 (310)
+|.+....+|..+..|.++||.+++.| ++.+.|+|+ ++.++.+++.+++|++.||++-+..++..+..+||
T Consensus 61 kG~i~~~~~p~~~a~~~~~gA~aiSVL----Te~~~F~Gs-----~~~l~~v~~~~~~PiLrKDFIid~~QI~ear~~GA 131 (254)
T d1piia2 61 KGVIRDDFDPARIAAIYKHYASAISVL----TDEKYFQGS-----FNFLPIVSQIAPQPILCKDFIIDPYQIYLARYYQA 131 (254)
T ss_dssp TEESCSSCCHHHHHHHHTTTCSEEEEE----CCSTTTCCC-----TTHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTC
T ss_pred hhhhcccchhHHHHHHHHhccCceEEe----cccccCCCC-----HHHHHHHHhccccccchhcccCcHHHHHHHHhhcc
Confidence 467777778866667889999999877 677889888 78999999999999999999886555666777999
Q ss_pred CEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecc
Q 021609 116 DYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 116 d~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
|+|+ +...+++.++.++++. +..++.+++.+||.+|+.++.+.|+++|+++++ .+.+
T Consensus 132 DavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnR---------------------nL~t 190 (254)
T d1piia2 132 DACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINNR---------------------DLRD 190 (254)
T ss_dssp SEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEESE---------------------ETTT
T ss_pred chhhhhHhhhcccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHhhcccccCcccc---------------------chhh
Confidence 9996 8888888888777766 668999999999999999999999999999975 3333
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
+..| .....++.+.+.+ +..++ +++||++++|+..+ ..|+|+|+||++||+++||....++++
T Consensus 191 f~vd--------~~~t~~L~~~ip~--~~~~V--sESGI~~~~d~~~l-~~g~davLiGeslm~~~dp~~~l~~Ll 253 (254)
T d1piia2 191 LSID--------LNRTRELAPKLGH--NVTVI--SESGINTYAQVREL-SHFANGFLIGSALMAHDDLHAAVRRVL 253 (254)
T ss_dssp TEEC--------THHHHHHHHHHCT--TSEEE--EESCCCCHHHHHHH-TTTCSEEEECHHHHTCSCHHHHHHHHH
T ss_pred hhhh--------hHHHHHHHHhCCC--CCEEE--EcCCCCCHHHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHHh
Confidence 3321 2223445555543 33444 89999999999775 779999999999999999998877664
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=9.6e-21 Score=166.45 Aligned_cols=191 Identities=16% Similarity=0.225 Sum_probs=149.3
Q ss_pred CcccccCCCH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 36 GGVIMDVVTP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 36 ~g~i~~~~~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
.|.+....++ ++|+.|+ .||.+++.| ++.+.|+|+ ++.++.+++.+++|++.||++-+..++..+..+|
T Consensus 54 ~G~i~~~~d~~~~a~~ye-~GA~aiSVL----Td~~~F~Gs-----~~~l~~vr~~~~~PiLrKDFIid~~QI~ea~~~G 123 (251)
T d1i4na_ 54 AGDINADASLEDFIRMYD-ELADAISIL----TEKHYFKGD-----PAFVRAARNLTCRPILAKDFYIDTVQVKLASSVG 123 (251)
T ss_dssp SCBSCTTCCHHHHHHHHH-HHCSEEEEE----CCCSSSCCC-----THHHHHHHTTCCSCEEEECCCCSTHHHHHHHHTT
T ss_pred CCCCcCCccHHHHHHHHh-cCCcceEEe----cccCCCCCC-----HHHHHHHhhcccCchhhhhhhhCHHHHHHHHhhc
Confidence 4667666677 6788885 699999877 677888888 8999999999999999999987555566677799
Q ss_pred CCEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHH-hCCCEEEEcCCCCCcchHHHHHHHHhhccceEee
Q 021609 115 IDYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIR-EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 115 ad~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~-~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l 191 (310)
||+|+ +...++..++.++++. +..|+.+++.+|+.+|+.++.+ .|+++++++++. +
T Consensus 124 ADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh~~~El~~al~~~~a~iiGINnRd---------------------L 182 (251)
T d1i4na_ 124 ADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINTRD---------------------L 182 (251)
T ss_dssp CSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEECBC---------------------T
T ss_pred cceEEeecccccHHHHHHHHHHHHHhCCeeecccCCHHHHHHHhcccccceeeeeecc---------------------h
Confidence 99996 7888888878777766 6789999999999999999985 579999999863 2
Q ss_pred cccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
.++.. +.....++...+.+ +.+++ +++||++++|+..+ +.|+|+|+||++||+++||....++|+.
T Consensus 183 ~t~~v--------d~~~~~~L~~~ip~--~~~~I--aESGI~~~~d~~~l-~~G~davLIG~sLm~~~~p~~~l~~l~a 248 (251)
T d1i4na_ 183 DTFEI--------KKNVLWELLPLVPD--DTVVV--AESGIKDPRELKDL-RGKVNAVLVGTSIMKAENPRRFLEEMRA 248 (251)
T ss_dssp TTCCB--------CTTHHHHHGGGSCT--TSEEE--EESCCCCGGGHHHH-TTTCSEEEECHHHHHCSSHHHHHHHHHH
T ss_pred hccch--------hhhHHHHHHhhCCC--CCEEE--EcCCCCCHHHHHHH-HhCCCEEEEChHHhCCCCHHHHHHHHHh
Confidence 22221 11222333333332 34454 89999999999775 6899999999999999999988877764
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=6e-21 Score=168.39 Aligned_cols=192 Identities=17% Similarity=0.200 Sum_probs=145.6
Q ss_pred CcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCC
Q 021609 36 GGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGI 115 (310)
Q Consensus 36 ~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGa 115 (310)
.|.+.+..-.++|+.|+++||.+++.| ++.+.|+|+ ++.++.+++.+++||+.||++-+..++..+..+||
T Consensus 59 ~G~i~~~dp~~~A~~y~~~GA~aiSVL----Te~~~F~Gs-----~~dl~~v~~~~~iPvLrKDFIid~~QI~ea~~~GA 129 (254)
T d1vc4a_ 59 EGLIREVDPVEAALAYARGGARAVSVL----TEPHRFGGS-----LLDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGA 129 (254)
T ss_dssp TCCCCSCCHHHHHHHHHHTTCSEEEEE----CCCSSSCCC-----HHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTC
T ss_pred CCccccCCHHHHHHHHHhcCCceEEEE----cCccccccc-----HHHHHHHHHHcCCCcccCCccccHHHHHHHHhccc
Confidence 466766433379999999999999777 677888888 89999999999999999999876556666778999
Q ss_pred CEEE-eCCCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecc
Q 021609 116 DYVD-ESEVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 116 d~Vi-~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
|+|+ +.. +...++.++++. +..++.+++.+||.+|+.++.++|+++|++++|. +.+
T Consensus 130 DaVLLIaa-ll~~~l~~l~~~A~~lgl~~LVEvh~~~El~~a~~~~a~iIGINnRd---------------------L~t 187 (254)
T d1vc4a_ 130 SAALLIVA-LLGELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINNRD---------------------LAT 187 (254)
T ss_dssp SEEEEEHH-HHGGGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEESBC---------------------TTT
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHhCCceEEEeccHHHHhhhhcCCCCEEEEeccc---------------------hhh
Confidence 9996 443 333344444444 4578999999999999999999999999999863 233
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
+.. +......+.+.+.+.. ++.+| +++||++++|+..+ +.|+|+|+||++||+++||....++|+
T Consensus 188 ~~v--------d~~~~~~l~~~i~~~~~~~i~I--sESGI~~~~dv~~l-~~g~davLIGesLm~~~d~~~~l~~L~ 253 (254)
T d1vc4a_ 188 LHI--------NLETAPRLGRLARKRGFGGVLV--AESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDLEAALRELV 253 (254)
T ss_dssp CCB--------CTTHHHHHHHHHHHTTCCSEEE--EESCCCSHHHHHTT-TTTCSEEEECHHHHTSSCHHHHHHHHH
T ss_pred hhc--------chHHHHHhhhcccccCCCCEEE--EccCCCCHHHHHHH-HcCCCEEEEChhhcCCCCHHHHHHHhc
Confidence 221 1122233434444432 33444 89999999999764 689999999999999999988877664
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.84 E-value=8.4e-20 Score=160.48 Aligned_cols=175 Identities=18% Similarity=0.240 Sum_probs=140.2
Q ss_pred CH-HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 44 TP-EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 44 ~~-~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
+| +.| .+.++||.+++.| ++.+.|+|+ ++.+..+++.+++|++.||++-+..++..+..+|||+|+ +.
T Consensus 64 d~~~~a-~~~~~gA~aiSVL----Td~~~F~Gs-----~~dl~~v~~~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~ 133 (247)
T d1a53a_ 64 DPIEYS-KFMERYAVGLSIL----TEEKYFNGS-----YETLRKIASSVSIPILMKDFIVKESQIDDAYNLGADTVLLIV 133 (247)
T ss_dssp CHHHHH-HHHTTTCSEEEEE----CCCTTTCCC-----HHHHHHHHHHCCSCEEEESCCCSHHHHHHHHHHTCSEEEEEG
T ss_pred CHHHHH-HHHHhCCCeEEEe----cCccccccc-----hHHHHHHHhccccceeecccccChHHHHHHHHhhcchhhhhh
Confidence 56 455 5778999999877 677888888 899999999999999999998865666677779999996 77
Q ss_pred CCCCchhHHHHHHh-cCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHH
Q 021609 122 EVLTPADEENHINK-HNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVF 200 (310)
Q Consensus 122 ~~~~~~~~~~~i~~-~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~ 200 (310)
..++..++.++++. +..++.+++++||.+|+.++.+.|+++|+++++.. .++..|
T Consensus 134 ~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~~a~iIGINnRnL---------------------~t~~vd--- 189 (247)
T d1a53a_ 134 KILTERELESLLEYARSYGMEPLIEINDENDLDIALRIGARFIGINSRDL---------------------ETLEIN--- 189 (247)
T ss_dssp GGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHTTCSEEEEESBCT---------------------TTCCBC---
T ss_pred hhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHhCCCCeEeeeccCh---------------------hhhhhh---
Confidence 77887778777766 67899999999999999999999999999998632 222211
Q ss_pred HhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCH
Q 021609 201 TFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 201 ~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp 261 (310)
......+...+.+ +.+++ +++||++++|+.++.++|+|||+||++||+++||
T Consensus 190 -----~~~~~~L~~~ip~--~~~~I--aESGI~t~~dv~~l~~~G~davLIGeaLmk~~d~ 241 (247)
T d1a53a_ 190 -----KENQRKLISMIPS--NVVKV--AESGISERNEIEELRKLGVNAFLIGSSLMRNPEK 241 (247)
T ss_dssp -----HHHHHHHHHHSCT--TSEEE--EESCCCCHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred -----hhHHHHHHhhCCC--CCeEE--EecCCCCHHHHHHHHHCCCCEEEECHHHcCCCch
Confidence 1112334444432 34555 8999999999999999999999999999998886
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.77 E-value=1.5e-17 Score=144.76 Aligned_cols=196 Identities=22% Similarity=0.335 Sum_probs=141.3
Q ss_pred ecchhhhhhCcccccCCC----------H----HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcC
Q 021609 27 KVGLAQMLRGGVIMDVVT----------P----EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVT 92 (310)
Q Consensus 27 ~~~~~~~~~~g~i~~~~~----------~----~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~ 92 (310)
|.++++++++|+|++++. + ++|+++.++|+.++ .++ . .+.++++++.++
T Consensus 4 k~~li~~lk~~livs~q~~~~~p~~~~~~~~v~~~A~a~~~~Ga~~i-~~~---------~-------~~~~~~ir~~~~ 66 (230)
T d1yxya1 4 KEKLMEQLKGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGI-RAN---------S-------VRDIKEIQAITD 66 (230)
T ss_dssp HHHHHHHHTTSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEE-EEE---------S-------HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCeEEEEecCCCCcccCCChHHHHHHHHHHHHCCCeEE-Eec---------C-------hhhHHHHHhhhh
Confidence 457777888887766431 1 57899999999987 331 1 577888999888
Q ss_pred cceeecccc----------CcHHHHHHHHHcCCCEEE-eC-C-----CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHH
Q 021609 93 IPVMAKARI----------GHFVEAQILEAIGIDYVD-ES-E-----VLTPADEENHINKHNFRIPFVCGCRNLGEALRR 155 (310)
Q Consensus 93 iPv~vk~~~----------~~~~~a~~~~~aGad~Vi-~~-~-----~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~ 155 (310)
.|+...... .+......+..+|+|.+. .. . .....+..+.+.....++.+...++|.++++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a 146 (230)
T d1yxya1 67 LPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVA 146 (230)
T ss_dssp SCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHH
T ss_pred cchhhhhcccCCcceeeechhHHHHHHHHhcCCCEEEEecccccccchhhHHHHHHHHHhcCCCceEecCCCCHHHHHHH
Confidence 887654321 234667888889999984 22 1 122345555555555678888899999999999
Q ss_pred HHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCH
Q 021609 156 IREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATP 235 (310)
Q Consensus 156 ~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~ 235 (310)
.++|+|++.++++..++.. .........+..+....++|++ ++|||+|+
T Consensus 147 ~~~Gad~i~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ipvi--a~GGI~t~ 195 (230)
T d1yxya1 147 HQAGIDFVGTTLSGYTPYS-----------------------------RQEAGPDVALIEALCKAGIAVI--AEGKIHSP 195 (230)
T ss_dssp HHTTCSEEECTTTTSSTTS-----------------------------CCSSSCCHHHHHHHHHTTCCEE--EESCCCSH
T ss_pred HhcCCCEEEeecccccccc-----------------------------cccchHHHHHHHHHhcCCCeEE--EeCCCCCH
Confidence 9999999998876543310 0111222223344444689998 78999999
Q ss_pred HHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 236 ADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 236 ~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+|+.+++++|||+|+|||+|++ |...+++|+++++
T Consensus 196 ~d~~~al~~GAd~V~vGsAi~~---p~~i~~~~~~~~~ 230 (230)
T d1yxya1 196 EEAKKINDLGVAGIVVGGAITR---PKEIAERFIEALK 230 (230)
T ss_dssp HHHHHHHTTCCSEEEECHHHHC---HHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEEChhhcC---HHHHHHHHHHHhC
Confidence 9999999999999999999994 8888999988764
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.71 E-value=2.6e-16 Score=135.78 Aligned_cols=180 Identities=21% Similarity=0.204 Sum_probs=133.6
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec--ccc--------CcHHHHHHHHHcCC
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK--ARI--------GHFVEAQILEAIGI 115 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk--~~~--------~~~~~a~~~~~aGa 115 (310)
++|+++..+|+.++ .+ .. .+.++++++..+.|+... ... .+.+..+.+.++|+
T Consensus 27 ~~A~aa~~~Ga~~i-~~---------~~-------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aga 89 (222)
T d1y0ea_ 27 KMALAAYEGGAVGI-RA---------NT-------KEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQC 89 (222)
T ss_dssp HHHHHHHHHTCSEE-EE---------ES-------HHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCeEE-ec---------CC-------HHHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHcCC
Confidence 56888899999987 33 11 577888888888887542 111 13567788889999
Q ss_pred CEEEeCC------CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceE
Q 021609 116 DYVDESE------VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIR 189 (310)
Q Consensus 116 d~Vi~~~------~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~ 189 (310)
|.+.... .....+..+.++++.....+..++.|.+++.++.+.|+|++.+.+..++...
T Consensus 90 d~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~--------------- 154 (222)
T d1y0ea_ 90 EVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYT--------------- 154 (222)
T ss_dssp SEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTS---------------
T ss_pred CEEEeeccccccccchHHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccc---------------
Confidence 9995221 1234566677766777788888999999999999999999987655332210
Q ss_pred eecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 190 VLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
.... .....++++.++++..++||+ ++|||+|++|+.+++++|||+|++||+|++ |...+++|+
T Consensus 155 --~~~~---------~~~~~~~~i~~~~~~~~iPVi--a~GGI~t~~d~~~~~~~GAdgV~iGsAi~r---p~~~~~~f~ 218 (222)
T d1y0ea_ 155 --QGQL---------LYQNDFQFLKDVLQSVDAKVI--AEGNVITPDMYKRVMDLGVHCSVVGGAITR---PKEITKRFV 218 (222)
T ss_dssp --TTCC---------TTHHHHHHHHHHHHHCCSEEE--EESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHH
T ss_pred --cCcc---------chhhHHHHHHHHHhcCCCcEE--EeCCCCCHHHHHHHHHcCCCEEEEchhhcC---HHHHHHHHH
Confidence 0000 012236778888888899998 789999999999999999999999999994 999999998
Q ss_pred HHHh
Q 021609 270 RAVT 273 (310)
Q Consensus 270 ~~i~ 273 (310)
++++
T Consensus 219 ~~l~ 222 (222)
T d1y0ea_ 219 QVME 222 (222)
T ss_dssp HTTC
T ss_pred HHhC
Confidence 7764
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=99.66 E-value=2.4e-15 Score=129.28 Aligned_cols=182 Identities=19% Similarity=0.239 Sum_probs=131.1
Q ss_pred HHHHHHHHHcCCcEEEeccCCcccccccCCCC--CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eC
Q 021609 45 PEQARVAEEAGACAVMALERVPADIRSQGGVA--RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 45 ~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~--~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~ 121 (310)
.+.++.+.++|++.+ +|. .+.-+. .......++++++..++|+++++. ++.+.+.|+|+|. ..
T Consensus 20 ~~~v~~~l~~Gv~~v-qlR-------~k~~~~~e~~~~a~~l~~i~~~~~~~liind~------~~lA~~~~adGvHl~~ 85 (206)
T d1xi3a_ 20 VESVREALEGGATAI-QMR-------IKNAPTREMYEIGKTLRQLTREYDALFFVDDR------VDVALAVDADGVQLGP 85 (206)
T ss_dssp HHHHHHHHHTTCSEE-EEC-------CCSCCHHHHHHHHHHHHHHHHHTTCEEEEESC------HHHHHHHTCSEEEECT
T ss_pred HHHHHHHHHcCCCEE-EEc-------CCCCCHHHHHHHHHHHHHHHHHcCCeEEechh------HHHHHhccCceEeecc
Confidence 477888899999976 773 221110 011123455566678999998764 4567889999996 44
Q ss_pred CCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHH
Q 021609 122 EVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFT 201 (310)
Q Consensus 122 ~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~ 201 (310)
.+.+ ....+. .+.+..++.++|+.+++..+.+.|+||+.+.+-..|. ++.
T Consensus 86 ~~~~-~~~~~~---~~~~~iig~s~h~~~e~~~a~~~g~DYi~~gpvf~T~----------------------tk~---- 135 (206)
T d1xi3a_ 86 EDMP-IEVAKE---IAPNLIIGASVYSLEEALEAEKKGADYLGAGSVFPTK----------------------TKE---- 135 (206)
T ss_dssp TSCC-HHHHHH---HCTTSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC------------------------------
T ss_pred cccc-Hhhhhh---cccccccccccCCHHHHHHHHhcCCCEEEeccccccc----------------------ccc----
Confidence 4443 232222 3456888899999999999999999999986432221 110
Q ss_pred hhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 202 FAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 202 ~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
......++.++++.+..++||+++ ||| +.+++.+++++||+||.+.|+|++++||...+++|.+.+++.
T Consensus 136 --~~~~~g~~~l~~~~~~~~~Pv~Ai--GGI-~~~ni~~~~~~Ga~gvAvis~I~~~~dp~~~~~~l~~~~~~~ 204 (206)
T d1xi3a_ 136 --DARVIGLEGLRKIVESVKIPVVAI--GGI-NKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEEV 204 (206)
T ss_dssp --CCCCCHHHHHHHHHHHCSSCEEEE--SSC-CTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred --ccccccHHHHHHHHHhcCCCEEEE--CCC-CHHHHHHHHHhCCCEEEEhHHHHCCCCHHHHHHHHHHHHHHh
Confidence 011234777888887789999955 999 799999999999999999999999999999999999888753
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.65 E-value=2.7e-15 Score=130.78 Aligned_cols=183 Identities=17% Similarity=0.257 Sum_probs=131.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC-----CCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA-----RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD- 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-----~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi- 119 (310)
+.++.+.++|++.| +|. .+.... +......+.++++..++|+++++. ++.+.+.|+|+|.
T Consensus 34 ~~v~~al~~Gv~~i-qlR-------~K~~~~~~~~~~~~~a~~l~~lc~~~~~~liInd~------~~lA~~~~adGvHl 99 (226)
T d2tpsa_ 34 TVVQKALKGGATLY-QFR-------EKGGDALTGEARIKFAEKAQAACREAGVPFIVNDD------VELALNLKADGIHI 99 (226)
T ss_dssp HHHHHHHHHTCSEE-EEC-------CCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEESC------HHHHHHHTCSEEEE
T ss_pred HHHHHHHHCCCCEE-EEc-------CCCccchhHHHHHHHHHHHHHHHHHhCCeEEEcCC------HHHHhhccCCEEEe
Confidence 67888999999976 773 221110 011123455556678999998875 3567788999996
Q ss_pred eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHH
Q 021609 120 ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEV 199 (310)
Q Consensus 120 ~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~ 199 (310)
...+.++....+.. + ...++.++++.+++..+.+.|+||+.+.+- + ++.+..+.
T Consensus 100 ~~~d~~~~~~r~~~---~-~~iig~S~h~~~e~~~a~~~g~DYi~~gpv-f---------------------~T~sK~~~ 153 (226)
T d2tpsa_ 100 GQEDANAKEVRAAI---G-DMILGVSAHTMSEVKQAEEDGADYVGLGPI-Y---------------------PTETKKDT 153 (226)
T ss_dssp CTTSSCHHHHHHHH---T-TSEEEEEECSHHHHHHHHHHTCSEEEECCS-S---------------------CCCSSSSC
T ss_pred ccccchhhhhhhcc---c-ceeeeeeccchHHHHHHHhCcCCeEEEecc-c---------------------cccccccc
Confidence 55566666655443 2 356888999999999999999999987542 2 22111000
Q ss_pred HHhhhccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 200 FTFAKKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 200 ~~~~~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
......+.++.+.+ ..++||+++ ||| +++++.+++.+|++||.+.|+|++++||...+++|.+.++.|.
T Consensus 154 -----~~~~~~~~~~~~~~~~~~~Pv~Ai--GGI-~~~ni~~l~~~Ga~giAvis~I~~a~dp~~~~~~~~~~~~~~k 223 (226)
T d2tpsa_ 154 -----RAVQGVSLIEAVRRQGISIPIVGI--GGI-TIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYK 223 (226)
T ss_dssp -----CCCCTTHHHHHHHHTTCCCCEEEE--SSC-CTTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred -----ccccccchhHHHHHhcCCCCEEEe--cCC-CHHHHHHHHHhCCCEEEEhHHhhcCCCHHHHHHHHHHHHHHHH
Confidence 01122556666653 468999955 999 7999999999999999999999999999999999999988764
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.54 E-value=5.1e-14 Score=123.49 Aligned_cols=207 Identities=23% Similarity=0.284 Sum_probs=133.6
Q ss_pred eeecchhhhhhCccc---ccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeec
Q 021609 25 SVKVGLAQMLRGGVI---MDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAK 98 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i---~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk 98 (310)
-++.+.++++.+|.. ....+| ++|+.|.+.||+++ ++|+.. .+ ...+.+.++++.+.+.+|+++.
T Consensus 10 Dl~~g~vV~~~~g~~~~~~~~~dP~~~a~~~~~~ga~~l~i~DLd~~------~~---~~~~~~~i~~i~~~~~~pi~vG 80 (239)
T d1vzwa1 10 DVRDGQAVRLVHGESGTETSYGSPLEAALAWQRSGAEWLHLVDLDAA------FG---TGDNRALIAEVAQAMDIKVELS 80 (239)
T ss_dssp EEETTEEBC--------CCBCCCHHHHHHHHHHTTCSEEEEEEHHHH------HT---SCCCHHHHHHHHHHCSSEEEEE
T ss_pred EEECCeEEEEECccccCeeecCCHHHHHHHHHHcCCCEEEEEeeccc------cc---ccchHHHHHHHHhhcCcceEee
Confidence 455667776666643 234577 78999999999998 456411 11 1234789999999999999999
Q ss_pred cccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHH-HHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCC-CcchH
Q 021609 99 ARIGHFVEAQILEAIGIDYVD-ESEVLTPADEEN-HINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAG-TGNII 175 (310)
Q Consensus 99 ~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~-~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~-~~~~~ 175 (310)
..+...++++.+.+.|++.|+ .+...+..++.+ ..+..+..+.+..+.... .+..++|.. +..+.
T Consensus 81 GGIrs~~~~~~ll~~Ga~kVvi~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~~------------~~~~~g~~~~~~~~~ 148 (239)
T d1vzwa1 81 GGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGT------------TLRGRGWTRDGGDLY 148 (239)
T ss_dssp SSCCSHHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETT------------EECCSSSCCCCCBHH
T ss_pred cccccchhhhhhhccccccchhhHHhhhccccchhhhccCCceeeeeecccee------------eecCccceeeccccc
Confidence 988888999999999999997 444444444443 333343333333333221 234455543 22333
Q ss_pred HHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc---CCCEEEEc
Q 021609 176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL---GCDGVFVG 252 (310)
Q Consensus 176 ~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~---GadgV~VG 252 (310)
+..+...+.....-+++++++|+++ .++++++++.+.+..++|++ ++|||++.+|+.++... |++||+||
T Consensus 149 ~~~~~~~~~g~~eii~tdi~~dGt~-----~G~d~~l~~~i~~~~~~pvi--~sGGv~s~~Di~~l~~l~~~g~~gvivg 221 (239)
T d1vzwa1 149 ETLDRLNKEGCARYVVTDIAKDGTL-----QGPNLELLKNVCAATDRPVV--ASGGVSSLDDLRAIAGLVPAGVEGAIVG 221 (239)
T ss_dssp HHHHHHHHTTCCCEEEEEC------------CCCHHHHHHHHHTCSSCEE--EESCCCSHHHHHHHHTTGGGTEEEEEEC
T ss_pred hhhhhhhhccccEEEEEeeccccee-----cCCcchhhhhhhhccCceEE--EECCCCCHHHHHHHHhhhhCCccEeeEh
Confidence 3333333333334567777877763 57789999999988899998 78999999999998654 99999999
Q ss_pred cccccCC
Q 021609 253 SGVFKSG 259 (310)
Q Consensus 253 sai~~a~ 259 (310)
++|+...
T Consensus 222 ~al~~g~ 228 (239)
T d1vzwa1 222 KALYAKA 228 (239)
T ss_dssp HHHHTTS
T ss_pred HHHHCCC
Confidence 9999744
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=99.54 E-value=1e-14 Score=125.37 Aligned_cols=168 Identities=23% Similarity=0.326 Sum_probs=126.9
Q ss_pred HHHHHHcCCCEEEeC----CC--CCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHh-----CCCEEEEc--CC--CC
Q 021609 107 AQILEAIGIDYVDES----EV--LTPADEENHINKHNFR-IPFVCGCRNLGEALRRIRE-----GAAMIRTK--GE--AG 170 (310)
Q Consensus 107 a~~~~~aGad~Vi~~----~~--~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~-----Gad~V~v~--g~--~~ 170 (310)
.+.+.++|++.|..+ +. -....+.+.++..++. ++++.+|+|.+||.+..++ |-++|++- +. ..
T Consensus 28 ~~ai~aSgaeiVTVAlRR~~~~~~~~~~~l~~i~~~~~~lLPNTAGc~tA~EAvr~A~lARE~~~t~~IKLEVi~D~~~L 107 (251)
T d1xm3a_ 28 KEAVAVSESDILTFAVRRMNIFEASQPNFLEQLDLSKYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSL 107 (251)
T ss_dssp HHHHHHHTCSEEEEETTSSTTC-------CTTCCGGGSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTC
T ss_pred HHHHHHhCCCEEEEEEeeecCcCCCCcchhhhccccceEEccchHHHhhHHHHHHHHHHHHHhcCCceEEEEEecCCCCc
Confidence 355666888887411 11 1122455555544555 7899999999999987653 67888843 33 23
Q ss_pred CcchHHHHHHHHhhccc-eEeecccChhHHHHh------h-------------hccCCcHHHHHHHhhcCCCCEEEeCCC
Q 021609 171 TGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTF------A-------------KKIAAPYDLVMQTKQLGRLPVVHFAAG 230 (310)
Q Consensus 171 ~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~------~-------------~~~~~~~~~i~~i~~~~~iPVi~iA~G 230 (310)
.++..+++++.+.+... |.+++|+++|.++.. | ++.. ....++.+.+..++||| ..+
T Consensus 108 ~PD~~etl~Aae~Lv~eGF~VlpY~~~D~v~ak~Le~~Gc~avMPlgsPIGSg~Gl~-n~~~l~~i~~~~~vPvI--vDA 184 (251)
T d1xm3a_ 108 LPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQGIL-NPLNLSFIIEQAKVPVI--VDA 184 (251)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCCCCCS-CHHHHHHHHHHCSSCBE--EES
T ss_pred CCCHHHHHHHHHHHHhCCcEEEEecCCCHHHHHHHHHcCChhHHHhhhhhhcCCCcC-ChHHHHHHHhcCCccEE--Eec
Confidence 77888999999999988 999999999998731 0 1122 24567778777899999 469
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
||.++.|+.+++++|||+|++.|+|.++.||..+|+.|..+++.++.
T Consensus 185 GIG~pSdAa~AMElG~daVLvNTAIA~a~dPv~MA~A~~~Av~AGR~ 231 (251)
T d1xm3a_ 185 GIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVEAGRL 231 (251)
T ss_dssp CCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHccCCEEEechhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987654
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=2.5e-14 Score=125.71 Aligned_cols=216 Identities=14% Similarity=0.147 Sum_probs=144.0
Q ss_pred eeecchhhhhhCccc----ccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceee
Q 021609 25 SVKVGLAQMLRGGVI----MDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMA 97 (310)
Q Consensus 25 ~~~~~~~~~~~~g~i----~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~v 97 (310)
-++.|.++++.+|.. .+..+| ++|+.|.+.|++++ ++|+.. ..|. ..+...+..+++ +..|+.+
T Consensus 8 Dl~~GkvVrl~~G~~~~~~~y~~dP~~~a~~~~~~g~~~l~ivDLda~------~~~~--~~~~~~~~~~~~-~~~pl~~ 78 (241)
T d1qo2a_ 8 DLFRGKVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVVDLSNA------IENS--GENLPVLEKLSE-FAEHIQI 78 (241)
T ss_dssp EEETTEEEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEEEHHHH------HHCC--CTTHHHHHHGGG-GGGGEEE
T ss_pred EEECCEEEEEeCcccCCceEECCCHHHHHHHHHHCCCCEEEEEecccc------cccC--Ccchhheehhcc-cccchhh
Confidence 456777777777765 345677 89999999999998 566411 1111 223455555554 5579999
Q ss_pred ccccCcHHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCc--ch
Q 021609 98 KARIGHFVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTG--NI 174 (310)
Q Consensus 98 k~~~~~~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~--~~ 174 (310)
...+...++++.+.+.|+|.|+ .+.....+++.+.+.+.+..+.+.++.++. .+..++|.... .+
T Consensus 79 gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~~~~~~~~~~~~~~~~~v~iD~~~~------------~~~~~g~~~~~~~~~ 146 (241)
T d1qo2a_ 79 GGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGG------------RVAFKGWLAEEEIDP 146 (241)
T ss_dssp ESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETT------------EECCTTCSSCSCCCH
T ss_pred hhhhhhhhhhhhccccccceEecCcccccCchhhhhhcccccceeeecccccc------------cccccCcccceeeeh
Confidence 8888788999999999999996 333333344444444332224444554332 45567764322 22
Q ss_pred HHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC------CCE
Q 021609 175 IEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG------CDG 248 (310)
Q Consensus 175 ~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G------adg 248 (310)
.+..+.+.+.....-++++.+.|++ ..++++++++.+.+..++|++ ++||+++.+|+.++.+.| ++|
T Consensus 147 ~~~~~~~~~~g~~eii~~dId~dGt-----~~G~d~~l~~~i~~~~~~pvi--~~GGv~s~~di~~l~~ig~~~~~~~~g 219 (241)
T d1qo2a_ 147 VSLLKRLKEYGLEEIVHTEIEKDGT-----LQEHDFSLTKKIAIEAEVKVL--AAGGISSENSLKTAQKVHTETNGLLKG 219 (241)
T ss_dssp HHHHHHHHTTTCCEEEEEETTHHHH-----TCCCCHHHHHHHHHHHTCEEE--EESSCCSHHHHHHHHHHHHHTTTSEEE
T ss_pred hHHHHHhhccccceEEEeehhhhhh-----ccccchhhhhhhhccCCceEE--EECCCCCHHHHHHHHHccccccCCEee
Confidence 3334333334344667788888876 357789999999888899998 789999999999998754 899
Q ss_pred EEEccccccCCCHHHHHHHH
Q 021609 249 VFVGSGVFKSGDPVKRAQAI 268 (310)
Q Consensus 249 V~VGsai~~a~dp~~~a~~l 268 (310)
|++|++|+...-...-+++|
T Consensus 220 vivG~al~~g~l~~~~~k~~ 239 (241)
T d1qo2a_ 220 VIVGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp EEECHHHHTTSSCHHHHHHH
T ss_pred EEEHHHHHCCCCCHHHHHHH
Confidence 99999998754333333433
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=1.2e-13 Score=122.16 Aligned_cols=199 Identities=18% Similarity=0.220 Sum_probs=135.7
Q ss_pred ccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCC
Q 021609 40 MDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 40 ~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad 116 (310)
.+..+| ++|+.|.+.|++++ ++|+..... ...+.+.++++++.+++|+++...+...++++.+...||+
T Consensus 27 ~~~gdP~~~a~~~~~~g~dei~ivDld~~~~~--------~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~ 98 (253)
T d1thfd_ 27 RDSGDPVELGKFYSEIGIDELVFLDITASVEK--------RKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGAD 98 (253)
T ss_dssp SCTTCHHHHHHHHHHTTCCEEEEEESSCSSSH--------HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCS
T ss_pred EECCCHHHHHHHHHHcCCCEEEEEeecccccC--------cccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCC
Confidence 345677 89999999999998 455422111 1123678889999999999999888888999999999999
Q ss_pred EEE-eCCCCC-chhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCc--chHHHHHHHHhhccceEee
Q 021609 117 YVD-ESEVLT-PADEENHINKHNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTG--NIIEAVRHVRSVMGDIRVL 191 (310)
Q Consensus 117 ~Vi-~~~~~~-~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~--~~~~~~~~~r~~~~~~~~l 191 (310)
.|+ .+..++ +..+.+..+.++.. +.+..+.... -+-..+..++|.... .+.+..+...+.....-++
T Consensus 99 kviigs~~~~n~~~l~~~~~~~G~~~iv~~id~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~ 170 (253)
T d1thfd_ 99 KVSINTAAVENPSLITQIAQTFGSQAVVVAIDAKRV--------DGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILL 170 (253)
T ss_dssp EEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEE--------TTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEE
T ss_pred EEEEChHHhhChHHHHHHHHHcCCeeEEEeeeeccc--------CCceeeeeeecccccchhHHHHHHHHHhccCCEEEE
Confidence 996 554443 44555555555443 3333333110 011245555553211 2222333333333335566
Q ss_pred cccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCH
Q 021609 192 RNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP 261 (310)
Q Consensus 192 ~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp 261 (310)
++++.|++ ..++++++++++++..++|++ ++||+++.+|+.++...|++||++|++|+...-.
T Consensus 171 tdI~~dGt-----~~G~d~~ll~~i~~~~~~pvi--~~GGv~s~~di~~l~~~g~~gvivgsal~~~~~~ 233 (253)
T d1thfd_ 171 TSIDRDGT-----KSGYDTEMIRFVRPLTTLPII--ASGGAGKMEHFLEAFLAGADAALAASVFHFREID 233 (253)
T ss_dssp EETTTTTS-----CSCCCHHHHHHHGGGCCSCEE--EESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSC
T ss_pred EEecccCc-----cCCccccccccccccccceEE--EecCCCCHHHHHHHHHCCCCEEEEchHHHcCCCC
Confidence 77777664 357789999999988899998 7899999999999999999999999999976543
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.51 E-value=1.2e-13 Score=122.01 Aligned_cols=213 Identities=19% Similarity=0.233 Sum_probs=142.4
Q ss_pred ecchhhhhhCccc---ccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc
Q 021609 27 KVGLAQMLRGGVI---MDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR 100 (310)
Q Consensus 27 ~~~~~~~~~~g~i---~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~ 100 (310)
+.+.++.++++.. ....+| ++|+.|.+.||+++ ++|+..... + ..+.+.++++.+.+.+|+++...
T Consensus 13 ~~g~vv~~kg~~~~~~~~~~dP~~~a~~~~~~gadei~ivDl~~~~~~-~-------~~~~~~i~~i~~~~~~pi~~gGG 84 (252)
T d1h5ya_ 13 DGGAKVVVKGVNFQGIREVGDPVEMAVRYEEEGADEIAILDITAAPEG-R-------ATFIDSVKRVAEAVSIPVLVGGG 84 (252)
T ss_dssp CGGGCEECTTCCCHHHHEEECHHHHHHHHHHTTCSCEEEEECCCCTTT-H-------HHHHHHHHHHHHHCSSCEEEESS
T ss_pred ECCEEEEEEeecCcceEECCCHHHHHHHHHHCCCCEEEEEeccccccc-c-------ccHHHHHHHHHhhcCCcceeecc
Confidence 3444444444432 234566 79999999999987 455422110 0 12257888898899999999988
Q ss_pred cCcHHHHHHHHHcCCCEEE-eCCCC-CchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCc--chH
Q 021609 101 IGHFVEAQILEAIGIDYVD-ESEVL-TPADEENHINKHNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTG--NII 175 (310)
Q Consensus 101 ~~~~~~a~~~~~aGad~Vi-~~~~~-~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~--~~~ 175 (310)
+...++++.+..+|++.|+ .+..+ .+..+.+..+..+.. +.+.+++... .+-..+.+++|.... ++.
T Consensus 85 Ir~~e~~~~ll~~G~~kVii~s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~--------~~~~~v~~~~~~~~~~~~~~ 156 (252)
T d1h5ya_ 85 VRSLEDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWN--------GEYYEVYVKGGREATGLDAV 156 (252)
T ss_dssp CCSHHHHHHHHHHTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEC--------SSSEEEEETTTTEEEEEEHH
T ss_pred cchhhhhhhHhhcCCcEEEecccccCCcchHHHHHHhcCCCcEEEEEEEEEc--------CCcEEEEEeCCeEcCCCCHH
Confidence 8888999999999999996 44443 344445555545543 5455554211 011246677774322 222
Q ss_pred HHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccc
Q 021609 176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 176 ~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai 255 (310)
+..+.+.++....-+++..+.|++ ..++++++++++++..++|++ ++|||++.+|+.++...|++||++|++|
T Consensus 157 ~~~~~~~~~g~~eii~tdI~~dG~-----~~G~d~~~~~~i~~~~~~pii--~~GGv~~~~di~~l~~~g~~gv~~gs~l 229 (252)
T d1h5ya_ 157 KWAKEVEELGAGEILLTSIDRDGT-----GLGYDVELIRRVADSVRIPVI--ASGGAGRVEHFYEAAAAGADAVLAASLF 229 (252)
T ss_dssp HHHHHHHHHTCSEEEEEETTTTTT-----CSCCCHHHHHHHHHHCSSCEE--EESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred HHHHHHHhcCCCEEEEEeecccCc-----cCCcCHHHHHHHHHhcCCCEE--EecCCCCHHHHHHHHHCCCCEEEEhhHH
Confidence 333333333233556667777664 356779999999988899998 7899999999999999999999999999
Q ss_pred ccCCCHH
Q 021609 256 FKSGDPV 262 (310)
Q Consensus 256 ~~a~dp~ 262 (310)
+...-..
T Consensus 230 ~~~~~~~ 236 (252)
T d1h5ya_ 230 HFRVLSI 236 (252)
T ss_dssp HTTSSCH
T ss_pred HcCCCCH
Confidence 9755433
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=99.50 E-value=2.1e-13 Score=120.40 Aligned_cols=216 Identities=19% Similarity=0.211 Sum_probs=141.5
Q ss_pred eecchhhhhhCc-ccccCCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc
Q 021609 26 VKVGLAQMLRGG-VIMDVVTP-EQARVAEEAGACAV--MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI 101 (310)
Q Consensus 26 ~~~~~~~~~~~g-~i~~~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~ 101 (310)
++.+.+++..++ -..+..+| ++|+.|.+.|++++ ++|+..... ...+.+.++++.+.+++|+++...+
T Consensus 12 i~~G~~Vk~~~~~~~~~~gdP~~~a~~~~~~g~dei~iiDl~~~~~~--------~~~~~~~i~~i~~~~~~pi~vgGGI 83 (251)
T d1ka9f_ 12 VHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEE--------RAILLDVVARVAERVFIPLTVGGGV 83 (251)
T ss_dssp EETTEETTCCCSSCCSSTTCHHHHHHHHHHHTCSCEEEEECCSSTTC--------HHHHHHHHHHHHTTCCSCEEEESSC
T ss_pred EECCEEEECccCCceEECCCHHHHHHHHHHcCCCEEEEEeccccccc--------chhHHHHHHHHHhccCcchheeccc
Confidence 445555544444 23455677 78999999999998 455422110 1123678889998999999998888
Q ss_pred CcHHHHHHHHHcCCCEEE-eCCCCCchhH-HHHHHhcCCC-CcEEEecCCHHHHHHHHHhCCCEEEEcCCCC-Cc-chHH
Q 021609 102 GHFVEAQILEAIGIDYVD-ESEVLTPADE-ENHINKHNFR-IPFVCGCRNLGEALRRIREGAAMIRTKGEAG-TG-NIIE 176 (310)
Q Consensus 102 ~~~~~a~~~~~aGad~Vi-~~~~~~~~~~-~~~i~~~~~~-i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~-~~-~~~~ 176 (310)
...++++.+.+.|++.|+ .+......++ .+..+..+.. +...++.... ..-..+..++|.. ++ .+.+
T Consensus 84 rs~e~~~~ll~~Ga~kVii~s~~~~n~~~i~~~~~~~G~q~iv~~id~~~~--------~~~~~~~~~~~~~~~~~~~~~ 155 (251)
T d1ka9f_ 84 RSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFGAQAVVLAIDARWR--------GDFPEVHVAGGRVPTGLHAVE 155 (251)
T ss_dssp CSHHHHHHHHHHTCSEEEECHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEE--------TTEEEEEETTTTEEEEEEHHH
T ss_pred cCHHHHHHHHHcCCCEEEECchhhhCHHHHHHHHHhhcccccccccchhhc--------ccceEEEeccceecCCccHHH
Confidence 788999999999999996 4444444444 4444334433 2222222100 0011355666643 21 2223
Q ss_pred HHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 177 ~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
..+...+.....-++++.+.|++ ..++++++++++.+..++|++ ++||+++.+|+.++.+.|++||++|++|+
T Consensus 156 ~~~~~~~~g~~eii~tdi~~dG~-----~~G~d~~l~~~i~~~~~~pii--~~GGv~~~~dl~~l~~~g~~gviig~al~ 228 (251)
T d1ka9f_ 156 WAVKGVELGAGEILLTSMDRDGT-----KEGYDLRLTRMVAEAVGVPVI--ASGGAGRMEHFLEAFQAGAEAALAASVFH 228 (251)
T ss_dssp HHHHHHHHTCCEEEEEETTTTTT-----CSCCCHHHHHHHHHHCSSCEE--EESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHhcCCCEEEEEeecccCc-----cCCcchhHHHHHHhhcceeEE--EecCCCCHHHHHHHHHCCCCEEEEhHHHH
Confidence 33333333333556677777765 256789999999888899998 78999999999999999999999999999
Q ss_pred cCCCHHHH
Q 021609 257 KSGDPVKR 264 (310)
Q Consensus 257 ~a~dp~~~ 264 (310)
....+...
T Consensus 229 ~g~~~~~~ 236 (251)
T d1ka9f_ 229 FGEIPIPK 236 (251)
T ss_dssp TTSSCHHH
T ss_pred cCCCCHHH
Confidence 76554433
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=3.1e-14 Score=129.29 Aligned_cols=139 Identities=20% Similarity=0.238 Sum_probs=105.4
Q ss_pred HHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHH----HhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC
Q 021609 50 VAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEI----KQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 50 ~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i----~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~ 122 (310)
.+.+.|+++| +|| |+++..+.+.|+.++++++.+.++ ++.+++||.+|.|+++.+.
T Consensus 74 ~~~~~~~~~I-dlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvK~RlG~d~~---------------- 136 (305)
T d1vhna_ 74 RILSEKYKWI-DLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEKN---------------- 136 (305)
T ss_dssp HHHTTTCSEE-EEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSSSC----------------
T ss_pred hhhhhheeee-eEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhcccccccccccCcccc----------------
Confidence 4456699986 998 777787877899999999877765 5668999999999884210
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
.+.+-+..+.+.|++.+.+|+++....
T Consensus 137 ------------------------~~~~~~~~l~~~G~~~itvH~Rt~~q~----------------------------- 163 (305)
T d1vhna_ 137 ------------------------EVEEIYRILVEEGVDEVFIHTRTVVQS----------------------------- 163 (305)
T ss_dssp ------------------------CHHHHHHHHHHTTCCEEEEESSCTTTT-----------------------------
T ss_pred ------------------------hhhHHHHHHHHhCCcEEEechhhhhhc-----------------------------
Confidence 011335556788999999999864211
Q ss_pred hhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHH
Q 021609 203 AKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVKRA 265 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~dp~~~a 265 (310)
....++|+.++.+++ ++||+ ++|||.|.+|+.++++ .||||||+|++.+. ||+...
T Consensus 164 -~~~~a~~~~i~~~~~--~ipvi--~NGdI~s~~d~~~~l~~tg~dgVMiGRgal~--nP~if~ 220 (305)
T d1vhna_ 164 -FTGRAEWKALSVLEK--RIPTF--VSGDIFTPEDAKRALEESGCDGLLVARGAIG--RPWIFK 220 (305)
T ss_dssp -TSSCCCGGGGGGSCC--SSCEE--EESSCCSHHHHHHHHHHHCCSEEEESGGGTT--CTTHHH
T ss_pred -cccchhhhHHHhhhh--hhhhh--cccccccHHHHHHHHHhcCCCeEehhHHHHH--hhhHhh
Confidence 023455777776665 69998 7899999999999985 79999999999997 787544
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=1.4e-12 Score=119.32 Aligned_cols=199 Identities=16% Similarity=0.244 Sum_probs=132.0
Q ss_pred eecc-CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCccee
Q 021609 18 ETKK-SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVM 96 (310)
Q Consensus 18 ~~~~-~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~ 96 (310)
+++. ..|+++.|+++ +.|.+++++++|.++.++|.-+++.-+..+.+ ..+.++++++ ...++.
T Consensus 27 ~t~lt~~l~~~iPIIa----a~MdtV~~~~mA~als~~GGlGvi~r~~~~e~-----------~~~~i~~vk~-~~~~v~ 90 (330)
T d1vrda1 27 DTRLTRQIRINIPLVS----AAMDTVTEAALAKALAREGGIGIIHKNLTPDE-----------QARQVSIVKK-TRLLVG 90 (330)
T ss_dssp CEESSSSCEESSSEEE----CCCTTTCSHHHHHHHHTTTCEEEECSSSCHHH-----------HHHHHHHHHT-CCBCCE
T ss_pred EEEEecCcccCCCEEe----CCCCCcCCHHHHHHHHHCCCeEEeecccchhh-----------hHHHHHHHhh-hccEEE
Confidence 3454 47889999999 77899999999999999998776432111100 0223344433 222332
Q ss_pred ecccc--CcHHHHHHHHHcCCCEEE--eCCCCC--chhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCC
Q 021609 97 AKARI--GHFVEAQILEAIGIDYVD--ESEVLT--PADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEA 169 (310)
Q Consensus 97 vk~~~--~~~~~a~~~~~aGad~Vi--~~~~~~--~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~ 169 (310)
+.... ...+.++.+.++|+|.++ .+..-. ..+..+.++...+++++++. +.|.+.++.+++.|+|.|.+....
T Consensus 91 ~~vgv~~~~~e~~~~li~agvd~ivId~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~ 170 (330)
T d1vrda1 91 AAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGP 170 (330)
T ss_dssp EEECSSTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSC
T ss_pred EEEecCHHHHHHHHHHHHCCCCEEEEecCCCCchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeecccc
Confidence 22222 346778899999999985 333322 33455556555677777776 889999999999999999985322
Q ss_pred CCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-H---HHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC
Q 021609 170 GTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-Y---DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG 245 (310)
Q Consensus 170 ~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~---~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G 245 (310)
+ .+|++-.. . ....| . -.....++..++||| |.|||++..|+.+++.+|
T Consensus 171 G--s~ctt~~~-----------~------------G~g~p~~sai~~~~~~~~~~~vpvI--AdGGi~~~gdiakAla~G 223 (330)
T d1vrda1 171 G--SICTTRVV-----------A------------GVGVPQLTAVMECSEVARKYDVPII--ADGGIRYSGDIVKALAAG 223 (330)
T ss_dssp S--TTCHHHHH-----------H------------CCCCCHHHHHHHHHHHHHTTTCCEE--EESCCCSHHHHHHHHHTT
T ss_pred C--ccccccce-----------e------------ccccccchhHHHHHHHHHhcCceEE--ecCCcccCCchheeeecc
Confidence 2 22321100 0 11212 2 223334455789998 889999999999999999
Q ss_pred CCEEEEccccccCC
Q 021609 246 CDGVFVGSGVFKSG 259 (310)
Q Consensus 246 adgV~VGsai~~a~ 259 (310)
||+|++|+.|..++
T Consensus 224 Ad~Vm~Gs~fa~~~ 237 (330)
T d1vrda1 224 AESVMVGSIFAGTE 237 (330)
T ss_dssp CSEEEESHHHHTBT
T ss_pred Cceeeecchheeec
Confidence 99999999998854
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.49 E-value=6.5e-13 Score=123.58 Aligned_cols=196 Identities=17% Similarity=0.195 Sum_probs=134.4
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecc--
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKA-- 99 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~-- 99 (310)
..++++.|+++ ..+.+++++++|.++.++|.-+++..+..+++. .+.++++++..+.|...++
T Consensus 41 ~~~~l~iPIIs----ApMdtVt~~~mA~als~~GGLGvLhr~~~~e~~-----------~~ev~~v~~~~~~p~~~~~~~ 105 (378)
T d1jr1a1 41 KKITLKTPLVS----SPMDTVTEAGMAIAMALTGGIGFIHHNCTPEFQ-----------ANEVRKVKKYEQYPLASKDAK 105 (378)
T ss_dssp SSCEESSCEEE----CCCTTTCSHHHHHHHHHHTCEEEECCSSCHHHH-----------HHHHHHHHTSCCCTTCCBCTT
T ss_pred CCccCCCCEEE----CCCCCcCCHHHHHHHHHCCCeeEEcCCCCHHHH-----------HHHHheehhhhhCcccccccc
Confidence 56788899999 778999999999999999988775432222111 3455566655555544321
Q ss_pred ---------ccC--cHHHHHHHHHcCCCEEE--eCCCCC--chhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEE
Q 021609 100 ---------RIG--HFVEAQILEAIGIDYVD--ESEVLT--PADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMI 163 (310)
Q Consensus 100 ---------~~~--~~~~a~~~~~aGad~Vi--~~~~~~--~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V 163 (310)
... ..+.++.+.++|+|.+. .++... ..+..+.+++..+++++++. +.|.+.++.+++.|+|.|
T Consensus 106 ~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~V 185 (378)
T d1jr1a1 106 KQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDAL 185 (378)
T ss_dssp SCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEE
T ss_pred cCEEEEEEeccCHHHHHHHHHHHhhccceEeeeccCccchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEE
Confidence 111 23456788889999995 344332 34556666666677777766 899999999999999999
Q ss_pred EEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-HHHH---HHHhhcCCCCEEEeCCCCCCCHHHHH
Q 021609 164 RTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLV---MQTKQLGRLPVVHFAAGGVATPADAA 239 (310)
Q Consensus 164 ~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i---~~i~~~~~iPVi~iA~GGI~t~~d~~ 239 (310)
.+....++.+ ++ | ... ..+.| +..+ ...++..++||| |.|||+++.|+.
T Consensus 186 kVGiG~Gs~c--tT----r-------~~t------------GvG~pq~sai~~~~~~a~~~~vpII--ADGGi~~~gdia 238 (378)
T d1jr1a1 186 RVGMGCGSIC--IT----Q-------EVL------------ACGRPQATAVYKVSEYARRFGVPVI--ADGGIQNVGHIA 238 (378)
T ss_dssp EECSSCSTTB--CH----H-------HHH------------CCCCCHHHHHHHHHHHHGGGTCCEE--EESCCCSHHHHH
T ss_pred eecccccccc--cc----c-------ccc------------ccCcccchhhhHHHHhhcccCCcee--cccccccCCcee
Confidence 9876544332 11 0 000 12222 2222 233344679998 889999999999
Q ss_pred HHHHcCCCEEEEccccccCC
Q 021609 240 MMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 240 ~~l~~GadgV~VGsai~~a~ 259 (310)
+++.+|||+||+|+.|..++
T Consensus 239 kAla~GAd~VMmGs~fAgt~ 258 (378)
T d1jr1a1 239 KALALGASTVMMGSLLAATT 258 (378)
T ss_dssp HHHHTTCSEEEESTTTTTBT
T ss_pred eEEEeecceeeecceeeeee
Confidence 99999999999999999754
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=99.45 E-value=2.9e-13 Score=120.27 Aligned_cols=183 Identities=20% Similarity=0.241 Sum_probs=125.9
Q ss_pred CHHHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHHhhc-Ccceeecccc------Cc
Q 021609 44 TPEQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIKQSV-TIPVMAKARI------GH 103 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~------~~ 103 (310)
+.+.++.+.++|+|.| +|. |. |..+++. .|......++.++++++.. ++|+++.... |.
T Consensus 33 ~~~~~~~l~~~GaDii-ElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~ 111 (267)
T d1qopa_ 33 SLKIIDTLIDAGADAL-ELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGI 111 (267)
T ss_dssp HHHHHHHHHHTTCSSE-EEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCH
T ss_pred HHHHHHHHHHcCCCEE-EECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccchhhcCc
Confidence 3478889999999976 543 21 2222222 2454444567788888774 7999886543 33
Q ss_pred HHHHHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHH-HHHHHHhCCCEEEEcCCCC-CcchHHHHH
Q 021609 104 FVEAQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGE-ALRRIREGAAMIRTKGEAG-TGNIIEAVR 179 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~e-a~~~~~~Gad~V~v~g~~~-~~~~~~~~~ 179 (310)
..+++.+.++|+|+++.+|.. +..++.+.+++++.....+++.+|.++ ..+..+..-.+|..-...+ ||.-
T Consensus 112 ~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~----- 186 (267)
T d1qopa_ 112 DAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAE----- 186 (267)
T ss_dssp HHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSS-----
T ss_pred hHHHHHHHhcCCCceeccchhhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhhhhhcccccCCcc-----
Confidence 577899999999999988852 344666777777777677777666655 4455566556665333322 3320
Q ss_pred HHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 180 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 180 ~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.. ....-.+.++++++.+++|++ .+.||++++|+.++++.|||||+|||+|++
T Consensus 187 ------------~~-----------~~~~~~~~i~~ik~~t~~Pv~--vGFGI~~~e~v~~~~~~~ADGvIVGSAivk 239 (267)
T d1qopa_ 187 ------------NR-----------GALPLHHLIEKLKEYHAAPAL--QGFGISSPEQVSAAVRAGAAGAISGSAIVK 239 (267)
T ss_dssp ------------SC-----------C--CCHHHHHHHHHTTCCCEE--EESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred ------------cc-----------cchhHHHHHHHHhhhccCCce--eecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 00 011225778889998999998 689999999999999999999999999997
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.45 E-value=3e-13 Score=117.24 Aligned_cols=169 Identities=22% Similarity=0.370 Sum_probs=120.9
Q ss_pred HHHHHHcCCCEEE-eC---CC---CCchhHHHHHHhcCCC-CcEEEecCCHHHHHHHHH----hC--CCEEEEc--CC--
Q 021609 107 AQILEAIGIDYVD-ES---EV---LTPADEENHINKHNFR-IPFVCGCRNLGEALRRIR----EG--AAMIRTK--GE-- 168 (310)
Q Consensus 107 a~~~~~aGad~Vi-~~---~~---~~~~~~~~~i~~~~~~-i~~~v~~~t~~ea~~~~~----~G--ad~V~v~--g~-- 168 (310)
.+.+.++|++.|. .. +. -....+..+++..++. ++++.+|.|.+||.+..+ ++ -++|++. +.
T Consensus 28 ~~ai~aSgaeiVTVAvRR~~~~~~~~~~~l~~~i~~~~~~~LPNTAGc~taeeAv~~A~larE~~~~~~~iKLEVi~d~~ 107 (243)
T d1wv2a_ 28 RRAIEASGAEIVTVAVRRTNIGQNPDEPNLLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQK 107 (243)
T ss_dssp HHHHHHSCCSEEEEEGGGCCC-------------CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTT
T ss_pred HHHHHHhCCCEEEEEccccccCCCcccchHHHhccccCeeecccccccccHHHHHHHHHHHHHHhCCCceEEEeeecccc
Confidence 3455667888773 11 11 1123455566544444 788999999999998754 33 4677743 33
Q ss_pred CCCcchHHHHHHHHhhccc-eEeecccChhHHHHh------h-------------hccCCcHHHHHHHhhcCCCCEEEeC
Q 021609 169 AGTGNIIEAVRHVRSVMGD-IRVLRNMDDDEVFTF------A-------------KKIAAPYDLVMQTKQLGRLPVVHFA 228 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~-~~~l~~~~~d~~~~~------~-------------~~~~~~~~~i~~i~~~~~iPVi~iA 228 (310)
...++..+++++.+.+... |.+++|+++|.++.- | ++..+ ...++.+++..++||+ .
T Consensus 108 ~L~Pd~~etl~Aa~~Lv~egF~Vlpy~~~D~v~ak~le~~Gc~~vMplgsPIGsg~Gi~n-~~~l~~i~~~~~vpvi--v 184 (243)
T d1wv2a_ 108 TLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGLGICN-PYNLRIILEEAKVPVL--V 184 (243)
T ss_dssp TCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCCCCCSC-HHHHHHHHHHCSSCBE--E
T ss_pred ccCCcHHHHHHHHHHhhcCceEEEeccCCCHHHHhHHHHcCceeeeeccccccccccccc-HHHHHhccccCCcceE--e
Confidence 2366778999999998888 999999999988721 0 11222 3456667676899999 5
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCCh
Q 021609 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDP 278 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~ 278 (310)
.+||.+++|+.+++++|||||+++|+|.++.||..+++.|+.+++.++..
T Consensus 185 dAGIg~psdaa~AMElG~dgVLvnsaIa~A~dP~~mA~A~~~Av~agr~a 234 (243)
T d1wv2a_ 185 DAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVAGRLA 234 (243)
T ss_dssp ESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred ecccCCHHHHHHHHHccCCEEEechHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999876543
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=99.41 E-value=1.7e-12 Score=118.07 Aligned_cols=206 Identities=15% Similarity=0.166 Sum_probs=130.6
Q ss_pred CCCH-HHHHHHHHcCCcEE--EeccCCcccccccCCC-CCCCCHHHHHHHHhhcCcceeeccccCc-----------HHH
Q 021609 42 VVTP-EQARVAEEAGACAV--MALERVPADIRSQGGV-ARMSDPQLIKEIKQSVTIPVMAKARIGH-----------FVE 106 (310)
Q Consensus 42 ~~~~-~~A~~~~~~Ga~~i--~~L~~~~~~~~~~~G~-~~~~~~~~i~~i~~~~~iPv~vk~~~~~-----------~~~ 106 (310)
+.+| ++|+.|.+.|||+| ++|+.. ..+. ....+.+.++++++.+.+|+.+...+.. .+.
T Consensus 47 iGdP~~~a~~~~~~gaDeL~ivDidas------~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~ 120 (323)
T d1jvna1 47 LGKPVQLAQKYYQQGADEVTFLNITSF------RDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEV 120 (323)
T ss_dssp CHHHHHHHHHHHHTTCSEEEEEEEC---------CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHH
T ss_pred cCCHHHHHHHHHHCCCCEEEEEECcCC------CCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHH
Confidence 4466 89999999999998 445311 1111 0122367889999999999999876643 356
Q ss_pred HHHHHHcCCCEEE-eCCCC--------------CchhHHHHHHhcCCC-CcEEEecCCHHH---HHHH---------HHh
Q 021609 107 AQILEAIGIDYVD-ESEVL--------------TPADEENHINKHNFR-IPFVCGCRNLGE---ALRR---------IRE 158 (310)
Q Consensus 107 a~~~~~aGad~Vi-~~~~~--------------~~~~~~~~i~~~~~~-i~~~v~~~t~~e---a~~~---------~~~ 158 (310)
|+.+.++|||.|+ .+.++ .+..+.+..+.++.. +.+.+++..... ..+. ...
T Consensus 121 A~~ll~~GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~ 200 (323)
T d1jvna1 121 ASLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPN 200 (323)
T ss_dssp HHHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTT
T ss_pred HHHHHHcCCCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhCCceEEEEEEEEeccccccccccccccccccccCC
Confidence 8999999999996 44332 222333444334433 444444321000 0000 000
Q ss_pred CC----CEEEEcCCCC-Cc-chHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCC
Q 021609 159 GA----AMIRTKGEAG-TG-NIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGV 232 (310)
Q Consensus 159 Ga----d~V~v~g~~~-~~-~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI 232 (310)
|- ..+.++||.. ++ ++.+..+.+.+.-...-+++..++|+++ .++++++++++.+..++|++ ++||+
T Consensus 201 ~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltdIdrDGt~-----~G~D~el~~~i~~~~~iPiI--asGGi 273 (323)
T d1jvna1 201 GEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSN-----SGYDLELIEHVKDAVKIPVI--ASSGA 273 (323)
T ss_dssp CCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTC-----SCCCHHHHHHHHHHCSSCEE--ECSCC
T ss_pred CccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEEeecccccc-----cccchhHHHHHHHhCCCCEE--EECCC
Confidence 01 1256666643 22 2333333333333336777888888763 57789999999988899998 89999
Q ss_pred CCHHHHHHHHH-cCCCEEEEccccccCCC
Q 021609 233 ATPADAAMMMQ-LGCDGVFVGSGVFKSGD 260 (310)
Q Consensus 233 ~t~~d~~~~l~-~GadgV~VGsai~~a~d 260 (310)
++.+|+.+++. .+++||++|++|+....
T Consensus 274 ~s~~di~~ll~~~~v~gv~~gs~~~~~~~ 302 (323)
T d1jvna1 274 GVPEHFEEAFLKTRADACLGAGMFHRGEF 302 (323)
T ss_dssp CSHHHHHHHHHHSCCSEEEESHHHHTTSC
T ss_pred CCHHHHHHHHHhCCCeEEEEhhHHHcCCC
Confidence 99999999874 68999999999997543
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=99.41 E-value=7.7e-13 Score=117.02 Aligned_cols=180 Identities=17% Similarity=0.269 Sum_probs=124.3
Q ss_pred HHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHHhhcCcceeeccccCc--HHHHHHH
Q 021609 46 EQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIKQSVTIPVMAKARIGH--FVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~--~~~a~~~ 110 (310)
+++..+.++|+|.| +|. |. |..+++. .|.+....++.++++++...+|+++....+. ...++.+
T Consensus 35 ~~l~~l~~~G~Dii-ElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~ 113 (261)
T d1rd5a_ 35 EALRLLDGCGADVI-ELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKM 113 (261)
T ss_dssp HHHHHHHHTTCSSE-EEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHH
T ss_pred HHHHHHHHcCCCEE-EECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCceeeeeeecchhhHHHHHH
Confidence 68889999999976 553 21 2222211 2555555677888888888999998765531 1234667
Q ss_pred HHcCCCEEEeCCC--CCchhHHHHHHhcCCCCcEEEecCCHHH-HHHHHHhCCCEEEEcCCCC-CcchHHHHHHHHhhcc
Q 021609 111 EAIGIDYVDESEV--LTPADEENHINKHNFRIPFVCGCRNLGE-ALRRIREGAAMIRTKGEAG-TGNIIEAVRHVRSVMG 186 (310)
Q Consensus 111 ~~aGad~Vi~~~~--~~~~~~~~~i~~~~~~i~~~v~~~t~~e-a~~~~~~Gad~V~v~g~~~-~~~~~~~~~~~r~~~~ 186 (310)
.++|+|+++++|. .+..++.+.+++++.....++..+|.++ .++..+..-.+|..-...+ ||.-
T Consensus 114 ~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~~GvTG~~------------ 181 (261)
T d1rd5a_ 114 KEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPR------------ 181 (261)
T ss_dssp HHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTT------------
T ss_pred HhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhhhhccCccccc------------
Confidence 8899999998874 2345667777777777777777765554 4445566556665433322 3310
Q ss_pred ceEeecccChhHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 187 DIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.... ...+.++++++.+++|++ .+.||++++|+.++.+.|||||+|||+|++
T Consensus 182 -----------------~~~~~~~~~~i~~ik~~t~~Pi~--vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~ 234 (261)
T d1rd5a_ 182 -----------------ANVNPRVESLIQEVKKVTNKPVA--VGFGISKPEHVKQIAQWGADGVIIGSAMVR 234 (261)
T ss_dssp -----------------SCBCTHHHHHHHHHHHHCSSCEE--EESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred -----------------ccchhHHHHHHHHhhhccCCCeE--EEcCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 0011 125678888888899998 689999999999999999999999999985
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.40 E-value=4.3e-13 Score=117.72 Aligned_cols=179 Identities=19% Similarity=0.227 Sum_probs=123.1
Q ss_pred HHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHHhhcCcceeecccc------CcHHH
Q 021609 46 EQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIKQSVTIPVMAKARI------GHFVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~~~~~iPv~vk~~~------~~~~~ 106 (310)
+.++++ +.|+|.+ +|. |. |..+++. .|.+....++.++++++..++|+++.... +...+
T Consensus 23 ~~l~~l-~~g~d~i-EiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~f 100 (248)
T d1geqa_ 23 NFLLAL-DEYAGAI-ELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNF 100 (248)
T ss_dssp HHHHHH-GGGBSCE-EEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHH
T ss_pred HHHHHH-HcCCCEE-EECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEeccccccccCHHHH
Confidence 567666 4589966 553 21 2222222 25554555778888998889999986544 33577
Q ss_pred HHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHH-HHHhCCCEEEEcCCCC-CcchHHHHHHHH
Q 021609 107 AQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGEALR-RIREGAAMIRTKGEAG-TGNIIEAVRHVR 182 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~-~~~~Gad~V~v~g~~~-~~~~~~~~~~~r 182 (310)
++.+.++|+|+++.++.. +..++.+.+++++.....++..+|.++..+ ..+..-.+|..-...+ ||.-
T Consensus 101 ~~~~~~~Gv~GliipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG~~-------- 172 (248)
T d1geqa_ 101 LAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAR-------- 172 (248)
T ss_dssp HHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC--------------
T ss_pred hhhhcccCeeEEeccCCcHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEEEecccccccc--------
Confidence 899999999999988752 234556666667788778888777665554 5566666666543332 3310
Q ss_pred hhccceEeecccChhHHHHhhhccC-CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
. ... .-.+.++++++.+++|++ .+.||++++|+.++++.|||||+|||+|++
T Consensus 173 ---------~------------~~~~~~~~~v~~vk~~t~~Pv~--vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~ 225 (248)
T d1geqa_ 173 ---------E------------EIPKTAYDLLRRAKRICRNKVA--VGFGVSKREHVVSLLKEGANGVVVGSALVK 225 (248)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHCSSCEE--EESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred ---------h------------hhhhhHHHHHHHHhhhccccee--eecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 0 011 125678888888899998 589999999999999999999999999986
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.35 E-value=1.8e-11 Score=112.99 Aligned_cols=196 Identities=16% Similarity=0.227 Sum_probs=129.0
Q ss_pred CcceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc-Ccceeeccc
Q 021609 22 SPFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKAR 100 (310)
Q Consensus 22 ~~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~ 100 (310)
..+.+..|++. ..+..++++++|..+.+.|.-+++..+..+++. .+..+..++.. ...+.+...
T Consensus 39 ~~~~~~iPIIs----A~MDtV~~~~mA~~ls~~Gglgvlhr~~~~~e~-----------~~~~~~~~~~~~~~~v~aavG 103 (365)
T d1zfja1 39 DNLTLNIPIIT----AAMDTVTGSKMAIAIARAGGLGVIHKNMSITEQ-----------AEEVRKVKRSEGRLLVAAAVG 103 (365)
T ss_dssp TTEEESSSEEE----CCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHH-----------HHHHHHHHHHTSCBCCEEEEC
T ss_pred CCcccCCCEEE----CCCCCcCCHHHHHHHHHCCCceEEcCccCHHHH-----------HHHhhhhhhccCceEEEEEec
Confidence 34667788888 778899999999999999988775543111110 22333333332 233333222
Q ss_pred c--CcHHHHHHHHHcCCCEEE--eCCCCC--chhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcc
Q 021609 101 I--GHFVEAQILEAIGIDYVD--ESEVLT--PADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGN 173 (310)
Q Consensus 101 ~--~~~~~a~~~~~aGad~Vi--~~~~~~--~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~ 173 (310)
. .+.+.++.+.++|+|.++ .++.-. ..+..+.+++..++++++++ +.|.+.++.+++.|+|.|.+....+ .
T Consensus 104 v~~~~~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~G--s 181 (365)
T d1zfja1 104 VTSDTFERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPG--S 181 (365)
T ss_dssp SSTTHHHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCC--T
T ss_pred cCchHHHHHHHHHHcCCCEEEEECCcccccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEeeeccc--c
Confidence 2 346788899999999985 333322 33445555555567777776 8999999999999999999864332 2
Q ss_pred hHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHH---hhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEE
Q 021609 174 IIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQT---KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249 (310)
Q Consensus 174 ~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i---~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV 249 (310)
.|++ | ... ..+.| +..+... +...++||| |.|||++..|+.+++.+|||+|
T Consensus 182 ~CTT----r-------~~t------------GvGvPq~sai~~~~~~~~~~~~~iI--ADGGi~~~GDi~KAla~GAd~V 236 (365)
T d1zfja1 182 ICTT----R-------VVA------------GVGVPQVTAIYDAAAVAREYGKTII--ADGGIKYSGDIVKALAAGGNAV 236 (365)
T ss_dssp TBCH----H-------HHT------------CCCCCHHHHHHHHHHHHHHTTCEEE--EESCCCSHHHHHHHHHTTCSEE
T ss_pred cccC----c-------cee------------eeeccchhHHHHHHHHHHhCCceEE--ecCCcCcchhhhhhhhccCCEE
Confidence 2211 0 001 22222 3333222 333578998 8899999999999999999999
Q ss_pred EEccccccCC
Q 021609 250 FVGSGVFKSG 259 (310)
Q Consensus 250 ~VGsai~~a~ 259 (310)
|+|+.|..++
T Consensus 237 MlG~~lAg~~ 246 (365)
T d1zfja1 237 MLGSMFAGTD 246 (365)
T ss_dssp EESTTTTTBS
T ss_pred Eecchhcccc
Confidence 9999999864
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=99.32 E-value=3.5e-12 Score=112.94 Aligned_cols=197 Identities=18% Similarity=0.185 Sum_probs=127.8
Q ss_pred HHHHHHHHcCCcEEEecc-----CC---ccccccc-----CCCCCCCCHHHHHHHHhhcCcceeeccccC------cHHH
Q 021609 46 EQARVAEEAGACAVMALE-----RV---PADIRSQ-----GGVARMSDPQLIKEIKQSVTIPVMAKARIG------HFVE 106 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-----~~---~~~~~~~-----~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~------~~~~ 106 (310)
+.++.+. .|+|.| +|. |. |..+++. .|.+....++.++++|+.+++|+++....+ ...+
T Consensus 34 ~~l~~l~-~gaDii-ElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~F 111 (271)
T d1ujpa_ 34 QAVEEVL-PYADLL-EIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERF 111 (271)
T ss_dssp HHHHHHG-GGCSSE-EEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHH
T ss_pred HHHHHHH-cCCCEE-EeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEeechhhhhCCchhH
Confidence 5666665 499976 553 21 2222222 255555567788889888999999876543 3467
Q ss_pred HHHHHHcCCCEEEeCCCC--CchhHHHHHHhcCCCCcEEEecCCHHHHHH-HHHhCCCEEEEcCCCC-CcchHHHHHHHH
Q 021609 107 AQILEAIGIDYVDESEVL--TPADEENHINKHNFRIPFVCGCRNLGEALR-RIREGAAMIRTKGEAG-TGNIIEAVRHVR 182 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~~--~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~-~~~~Gad~V~v~g~~~-~~~~~~~~~~~r 182 (310)
++.+.++|+|+++.++.. +..++.+.+++++..++.+++.+|.++..+ ..+..-.+|..-+..+ ||. +
T Consensus 112 ~~~~~~aGvdGliipDLP~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~--------~ 183 (271)
T d1ujpa_ 112 FGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGM--------R 183 (271)
T ss_dssp HHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC---------------
T ss_pred hHHHhhcCceeEeccchhhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCcchhhhhcccCccCc--------c
Confidence 899999999999988752 345667777777788777777776655555 4454445655433222 331 0
Q ss_pred hhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc----C
Q 021609 183 SVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----S 258 (310)
Q Consensus 183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~----a 258 (310)
. . ....-.+.++++++.+++|++ .+.||++++|+..+ .+||||+|||+|++ .
T Consensus 184 ~------~--------------~~~~~~~~i~~ik~~t~~Pv~--vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~i~e~ 239 (271)
T d1ujpa_ 184 E------R--------------LPEEVKDLVRRIKARTALPVA--VGFGVSGKATAAQA--AVADGVVVGSALVRALEEG 239 (271)
T ss_dssp -------------------------CCHHHHHHHHTTCCSCEE--EESCCCSHHHHHHH--TTSSEEEECHHHHHHHHTT
T ss_pred c------c--------------chHHHHHHHHhhhccccCCeE--EeCCCCCHHHHHHh--CCCCEEEEcHHHHHHHHhC
Confidence 0 0 011236678889998999998 58999999999764 58999999999985 3
Q ss_pred CCHHHHHHHHHHHHhccC
Q 021609 259 GDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 259 ~dp~~~a~~l~~~i~~~~ 276 (310)
.+.....+++.+.+++..
T Consensus 240 ~~~~~~~~~i~~~l~~lk 257 (271)
T d1ujpa_ 240 RSLAPLLQEIRQGLQRLE 257 (271)
T ss_dssp CCHHHHHHHHHHHHBCC-
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 355555556666665543
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=99.31 E-value=7.4e-11 Score=109.94 Aligned_cols=206 Identities=15% Similarity=0.226 Sum_probs=126.6
Q ss_pred cceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEecc----CCcccc---cccC--------CCCCCCCH------
Q 021609 23 PFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALE----RVPADI---RSQG--------GVARMSDP------ 81 (310)
Q Consensus 23 ~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~----~~~~~~---~~~~--------G~~~~~~~------ 81 (310)
.+....|++. ..|..++++++|..+.+.|.-+++.-| .+.+++ +.+. +......+
T Consensus 36 ~~~l~iPIis----A~MDtVt~~~mAi~ma~~GGlgVihr~~~ie~q~~~v~~Vk~~~~~~~~~~~~d~~~~~~~~~t~~ 111 (388)
T d1eepa_ 36 NISLNIPFLS----SAMDTVTESQMAIAIAKEGGIGIIHKNMSIEAQRKEIEKVKTYKFQKTINTNGDTNEQKPEIFTAK 111 (388)
T ss_dssp SCEESSSEEE----CCCTTTCSHHHHHHHHHHTSEEEECSSSCHHHHHHHHHHHHTCC----------------------
T ss_pred CEecCCCEEe----cCCCCCCCHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHhhhccccccccccCccccccchhhhhh
Confidence 4666678888 678889999999999999988876533 110000 0000 00000000
Q ss_pred ------HHHHHHHhhcCcceeecc-------------ccCcHHHHHHHHHcCCCEEE--eCCCCC--chhHHHHHHhcCC
Q 021609 82 ------QLIKEIKQSVTIPVMAKA-------------RIGHFVEAQILEAIGIDYVD--ESEVLT--PADEENHINKHNF 138 (310)
Q Consensus 82 ------~~i~~i~~~~~iPv~vk~-------------~~~~~~~a~~~~~aGad~Vi--~~~~~~--~~~~~~~i~~~~~ 138 (310)
+..+...+.-..|..+++ .....+.+..+.++|+|.++ .++.-. ..++.+.+++..+
T Consensus 112 ~~~~~~~a~~d~~~~~~~p~~~~d~~~~l~vgaAvg~~~~~~~ra~~L~~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~ 191 (388)
T d1eepa_ 112 QHLEKSDAYKNAEHKEDFPNACKDLNNKLRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYP 191 (388)
T ss_dssp ----------------CCTTCCBCTTSCBCCEEEECSCTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCT
T ss_pred hhhhhhHHHHhHHHHhhhhHHHhhhhccchhhhccCCCHHHHHHHHHHHhhccceeeeeccccchHHHHHHHHHHHHHCC
Confidence 001111111122322221 11235778899999999996 344322 4466666766667
Q ss_pred CCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHH
Q 021609 139 RIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQT 216 (310)
Q Consensus 139 ~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i 216 (310)
+++++++ +.|.+.++.+++.|+|.|.+....+ .+|++- ... +.+.| +..+...
T Consensus 192 ~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpG--s~CtTr-----------~~~------------GvG~pq~sai~~~ 246 (388)
T d1eepa_ 192 NLDLIAGNIVTKEAALDLISVGADCLKVGIGPG--SICTTR-----------IVA------------GVGVPQITAICDV 246 (388)
T ss_dssp TCEEEEEEECSHHHHHHHHTTTCSEEEECSSCS--TTSHHH-----------HHH------------CCCCCHHHHHHHH
T ss_pred CCceeeccccCHHHHHHHHhcCCCeeeeccccc--cccccc-----------ccc------------ccCcchHHHHHHH
Confidence 8888887 8999999999999999999864332 333221 111 22222 3222222
Q ss_pred ---hhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 021609 217 ---KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 217 ---~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~ 259 (310)
.....+||| |.|||+++.|+.+++.+|||+||+|+.|..++
T Consensus 247 ~~~~~~~~vpiI--ADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~ 290 (388)
T d1eepa_ 247 YEACNNTNICII--ADGGIRFSGDVVKAIAAGADSVMIGNLFAGTK 290 (388)
T ss_dssp HHHHTTSSCEEE--EESCCCSHHHHHHHHHHTCSEEEECHHHHTBT
T ss_pred HHHhccCCceEE--eccccCcCCceeeeEEeccceeecchhhhccc
Confidence 333578998 88999999999999999999999999999865
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=99.21 E-value=2.2e-10 Score=105.79 Aligned_cols=192 Identities=15% Similarity=0.107 Sum_probs=122.6
Q ss_pred cceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--Ccceeecc-
Q 021609 23 PFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKA- 99 (310)
Q Consensus 23 ~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~- 99 (310)
.+....|++. ..|..++++++|..+.+.|.-.++.-+ . ...+....+++.. ...+....
T Consensus 46 ~i~l~iPIIs----AnMDTVt~~~mA~~la~~GglgvihR~--------~------~ie~~~~~~~~~~~~~~~~~~~~~ 107 (362)
T d1pvna1 46 EINLKIPLVS----AIMQSVSGEKMAIALAREGGISFIFGS--------Q------SIESQAAMVHAVKNFRYLVGAGIN 107 (362)
T ss_dssp SCEESSSEEE----CSCTTTCSHHHHHHHHHTTCEEEECCS--------S------CHHHHHHHHHHHHTCCCCCEEEEC
T ss_pred ccccCCcEEe----cCCCCcCCHHHHHHHHHCCCEEEEeec--------C------CHHHHHHHhhhhhhcccccccccc
Confidence 4445677777 678889999999999999977664321 1 0112233332222 22222211
Q ss_pred ccCcHHHHHHHHHcCCCEEE--eCCCCC--chhHHHHHHh-cCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcc
Q 021609 100 RIGHFVEAQILEAIGIDYVD--ESEVLT--PADEENHINK-HNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGN 173 (310)
Q Consensus 100 ~~~~~~~a~~~~~aGad~Vi--~~~~~~--~~~~~~~i~~-~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~ 173 (310)
.....+.++.+.++|+|.+. .++... ..+..+.+++ ....++++++ +.|.+.++.+++.|+|+|.+.-.. |.
T Consensus 108 ~~~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~--Gs 185 (362)
T d1pvna1 108 TRDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGG--GS 185 (362)
T ss_dssp SSSHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSC--ST
T ss_pred hhhhHHHHHHHhhcCceEEeechhccchhHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecccc--cc
Confidence 11235678899999999995 444433 3355555644 3345777766 889999999999999999986332 23
Q ss_pred hHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHHhh---------cCCCCEEEeCCCCCCCHHHHHHHHH
Q 021609 174 IIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQTKQ---------LGRLPVVHFAAGGVATPADAAMMMQ 243 (310)
Q Consensus 174 ~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i~~---------~~~iPVi~iA~GGI~t~~d~~~~l~ 243 (310)
+|++- ..+ +.+.| +..+.+..+ ...+||+ |.|||+++.|+.+++.
T Consensus 186 ~CTTr-----------~~t------------GvG~Pq~sAv~e~a~~~~~~~~~~~~~v~ii--aDGGi~~~gdi~KAla 240 (362)
T d1pvna1 186 ICITR-----------EQK------------GIGRGQATAVIDVVAERNKYFEETGIYIPVC--SDGGIVYDYHMTLALA 240 (362)
T ss_dssp TBCHH-----------HHT------------CBCCCHHHHHHHHHHHHHHHHHHHSEECCEE--EESCCCSHHHHHHHHH
T ss_pred cccch-----------hhh------------ccCCchHHHHHHHHHHHHHhhhhcccCCcee--eccccCcccceeEEEE
Confidence 33211 111 22222 333333321 1258998 8899999999999999
Q ss_pred cCCCEEEEccccccCC
Q 021609 244 LGCDGVFVGSGVFKSG 259 (310)
Q Consensus 244 ~GadgV~VGsai~~a~ 259 (310)
+|||.||+|+.|..++
T Consensus 241 ~GAd~VM~G~~lAg~~ 256 (362)
T d1pvna1 241 MGADFIMLGRYFARFE 256 (362)
T ss_dssp TTCSEEEESHHHHTBT
T ss_pred Eeccceeehhhhhccc
Confidence 9999999999998754
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.17 E-value=7.9e-11 Score=106.58 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=55.6
Q ss_pred HHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhh
Q 021609 210 YDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEV 280 (310)
Q Consensus 210 ~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~ 280 (310)
+++++++++.. ++||+ ++|||.+++|+.+++.+|||+|+|+|+++. +++...+++.+.+++|++.++
T Consensus 243 l~~v~~~~~~~~~ipIi--~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~--~G~~~i~~i~~~L~~~m~~~g 310 (312)
T d1gtea2 243 LRAVTTIARALPGFPIL--ATGGIDSAESGLQFLHSGASVLQVCSAVQN--QDFTVIQDYCTGLKALLYLKS 310 (312)
T ss_dssp HHHHHHHHHHSTTCCEE--EESSCCSHHHHHHHHHTTCSEEEESHHHHT--SCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcEE--EEcCCCCHHHHHHHHHcCCCeeEECHhhhc--cChHHHHHHHHHHHHHHHHcC
Confidence 45677776654 59998 789999999999999999999999999997 445677779999988887654
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=99.15 E-value=3.9e-11 Score=108.23 Aligned_cols=76 Identities=26% Similarity=0.406 Sum_probs=68.6
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcc
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLG 289 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~ 289 (310)
+++++++++..++||+ ++|||.|++|+.+++.+|||+|++||+++. +|+ ..+++.+.+.++++.+++.++++..|
T Consensus 230 l~~i~~i~~~~~ipIi--g~GGI~s~~Da~~~i~~GAd~V~ig~~~~~--~P~-i~~~I~~~L~~~m~~~g~~si~e~~g 304 (311)
T d1ep3a_ 230 LKLIHQVAQDVDIPII--GMGGVANAQDVLEMYMAGASAVAVGTANFA--DPF-VCPKIIDKLPELMDQYRIESLESLIQ 304 (311)
T ss_dssp HHHHHHHHTTCSSCEE--ECSSCCSHHHHHHHHHHTCSEEEECTHHHH--CTT-HHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHhhhcceeEE--EeCCcCCHHHHHHHHHcCCCEEEecHHHHc--CCh-HHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 6778888888899998 899999999999999999999999999997 787 56779999999999999999999888
Q ss_pred c
Q 021609 290 E 290 (310)
Q Consensus 290 ~ 290 (310)
.
T Consensus 305 ~ 305 (311)
T d1ep3a_ 305 E 305 (311)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.12 E-value=4.4e-10 Score=95.35 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=115.9
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCcHHHHHHHHHcCCCEEEeCC
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGHFVEAQILEAIGIDYVDESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~ 122 (310)
+.++++.++|...+ +-|+ . ....+.++++++.. ++-+.+... -+.++++.+.++||++++.+.
T Consensus 25 ~~~~al~~~Gi~~iEitlr-------~------p~a~~~i~~l~~~~~~~~~vGaGTV-~~~~~~~~a~~aGa~fivsP~ 90 (202)
T d1wa3a1 25 EKALAVFEGGVHLIEITFT-------V------PDADTVIKELSFLKEKGAIIGAGTV-TSVEQCRKAVESGAEFIVSPH 90 (202)
T ss_dssp HHHHHHHHTTCCEEEEETT-------S------TTHHHHHHHTHHHHHTTCEEEEESC-CSHHHHHHHHHHTCSEEECSS
T ss_pred HHHHHHHHcCCCEEEEecC-------C------ccHHHHHHHHHHhcCCCcEEEeccc-ccHHHHHHHHhhcccEEeCCC
Confidence 46788899999976 3331 1 01156777766432 343444333 245889999999999997443
Q ss_pred CCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHh
Q 021609 123 VLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTF 202 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~ 202 (310)
. ..++.+...+ .+++++.++.|..|+..+.+.|++++++++...
T Consensus 91 ~--~~~v~~~~~~--~~i~~iPGv~TpsEi~~A~~~G~~~lK~fPa~~-------------------------------- 134 (202)
T d1wa3a1 91 L--DEEISQFCKE--KGVFYMPGVMTPTELVKAMKLGHTILKLFPGEV-------------------------------- 134 (202)
T ss_dssp C--CHHHHHHHHH--HTCEEECEECSHHHHHHHHHTTCCEEEETTHHH--------------------------------
T ss_pred C--cHHHHHHHHh--cCCceeCCcCcHHHHHHHHHCCCCEEEecchhh--------------------------------
Confidence 2 3466666544 478999999999999999999999999975210
Q ss_pred hhccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 203 AKKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 203 ~~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
.+ ...++.++. ..++|++ +.||| +.+++.+++++|+.+|.+||+|++ .|+....++.++
T Consensus 135 ---~G--~~~lk~l~~p~p~i~~i--ptGGI-~~~n~~~~l~aga~avg~Gs~l~~-~~~~~i~~~a~~ 194 (202)
T d1wa3a1 135 ---VG--PQFVKAMKGPFPNVKFV--PTGGV-NLDNVCEWFKAGVLAVGVGSALVK-GTPDEVREKAKA 194 (202)
T ss_dssp ---HH--HHHHHHHHTTCTTCEEE--EBSSC-CTTTHHHHHHHTCSCEEECHHHHC-SCHHHHHHHHHH
T ss_pred ---cC--HHHHHHHhCcccCCcEE--eeCCC-CHHHHHHHHHCCCeEEEEchhhcC-CCHHHHHHHHHH
Confidence 01 134555544 2468998 89999 799999999999999999999997 455544443333
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=99.08 E-value=2.5e-09 Score=91.13 Aligned_cols=155 Identities=12% Similarity=0.155 Sum_probs=114.5
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
+.++++.++|...+ +-++ . ....+.++++++++ ++-+.+.... ..++++.+.++||++++.+..
T Consensus 30 ~~~~al~~~Gi~~iEitl~-------~------~~a~~~I~~l~~~~p~~~vGaGTV~-~~~~~~~a~~aGa~FivSP~~ 95 (212)
T d1vhca_ 30 PLADTLAKNGLSVAEITFR-------S------EAAADAIRLLRANRPDFLIAAGTVL-TAEQVVLAKSSGADFVVTPGL 95 (212)
T ss_dssp HHHHHHHHTTCCEEEEETT-------S------TTHHHHHHHHHHHCTTCEEEEESCC-SHHHHHHHHHHTCSEEECSSC
T ss_pred HHHHHHHHCCCCEEEEeCC-------C------hhHHHHHHHHHhcCCCceEeeeecc-cHHHHHHHHhhCCcEEECCCC
Confidence 56888899999976 3332 1 01157888887765 5555544433 358899999999999975542
Q ss_pred CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
..++.+..++ .+++++.++.|+.|+..+.++|+++|++++....+
T Consensus 96 --~~~v~~~a~~--~~i~~iPGv~TpsEi~~A~~~G~~~vK~FPA~~~g------------------------------- 140 (212)
T d1vhca_ 96 --NPKIVKLCQD--LNFPITPGVNNPMAIEIALEMGISAVKFFPAEASG------------------------------- 140 (212)
T ss_dssp --CHHHHHHHHH--TTCCEECEECSHHHHHHHHHTTCCEEEETTTTTTT-------------------------------
T ss_pred --CHHHHHHHHh--cCCCccCCcCCHHHHHHHHHCCCCEEEEccccccc-------------------------------
Confidence 4566666554 58999999999999999999999999998753211
Q ss_pred hccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 204 KKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 204 ~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
....++.++. ..++|++ +.||| +.+++.+++++|+.+++.||.++.
T Consensus 141 -----G~~~lkal~~p~p~~~~~--ptGGV-~~~N~~~yl~~g~v~~~~Gs~l~~ 187 (212)
T d1vhca_ 141 -----GVKMIKALLGPYAQLQIM--PTGGI-GLHNIRDYLAIPNIVACGGSWFVE 187 (212)
T ss_dssp -----HHHHHHHHHTTTTTCEEE--EBSSC-CTTTHHHHHTSTTBCCEEECGGGC
T ss_pred -----hHHHHHHHhccccCCeEE--ecCCC-CHHHHHHHHhCCCEEEEEChhhCC
Confidence 1223444443 2468898 89999 699999999999999999999985
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=3.8e-09 Score=90.05 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=115.2
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
+.++++.++|...+ +-++ . ....+.++++++.+ ++-+.+... -..++++.+.++||++++.+.
T Consensus 31 ~~~~al~~~Gi~~iEitl~-------t------p~a~~~I~~l~~~~p~~~vGaGTV-~~~~~~~~a~~aGa~FivSP~- 95 (213)
T d1wbha1 31 PMAKALVAGGVRVLNVTLR-------T------ECAVDAIRAIAKEVPEAIVGAGTV-LNPQQLAEVTEAGAQFAISPG- 95 (213)
T ss_dssp HHHHHHHHTTCCEEEEESC-------S------TTHHHHHHHHHHHCTTSEEEEESC-CSHHHHHHHHHHTCSCEEESS-
T ss_pred HHHHHHHHCCCCEEEEeCC-------C------hhHHHHHHHHHHHCCCCeeecccc-ccHHHHHHHHHCCCcEEECCC-
Confidence 57889999999977 3332 1 11167888888775 444444333 245889999999999997555
Q ss_pred CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
-..++.+..++ .+++++.++.|+.|+..+.++|++++++++....+
T Consensus 96 -~~~~v~~~a~~--~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~~G------------------------------- 141 (213)
T d1wbha1 96 -LTEPLLKAATE--GTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANG------------------------------- 141 (213)
T ss_dssp -CCHHHHHHHHH--SSSCEEEEESSHHHHHHHHHTTCCEEEETTTTTTT-------------------------------
T ss_pred -CCHHHHHHHHh--cCCCccCCcCCHHHHHHHHHCCCCEEEeccchhcC-------------------------------
Confidence 24566666654 57999999999999999999999999998643211
Q ss_pred hccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 204 KKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 204 ~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+...++.++.- .+++++ +.||| +++++.+++++|+.+++.||.++.
T Consensus 142 -----g~~~lkal~~p~p~~~~~--ptGGV-~~~n~~~yl~~g~v~~~~Gs~l~~ 188 (213)
T d1wbha1 142 -----GVKALQAIAGPFSQVRFC--PTGGI-SPANYRDYLALKSVLCIGGSWLVP 188 (213)
T ss_dssp -----HHHHHHHHHTTCTTCEEE--EBSSC-CTTTHHHHHTSTTBSCEEEGGGSC
T ss_pred -----hHHHHHHhcCcccCCcee--eeCCC-CHHHHHHHHhCCCEEEEEChhhCC
Confidence 12344555442 467888 89999 699999999999999999999985
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=99.02 E-value=3.1e-09 Score=91.68 Aligned_cols=164 Identities=21% Similarity=0.295 Sum_probs=113.3
Q ss_pred HHHHHHhhcCcceeecccc----C---cHHHHHHHHHcCCCEEEeCCC---CCchhHHHHHHh-cCCCCcEEEecCCHHH
Q 021609 83 LIKEIKQSVTIPVMAKARI----G---HFVEAQILEAIGIDYVDESEV---LTPADEENHINK-HNFRIPFVCGCRNLGE 151 (310)
Q Consensus 83 ~i~~i~~~~~iPv~vk~~~----~---~~~~a~~~~~aGad~Vi~~~~---~~~~~~~~~i~~-~~~~i~~~v~~~t~~e 151 (310)
.+..+++..++++..++.. + -...++.+.++|++.++..+. ....+..+.+.. ...++.+++++.+.++
T Consensus 47 ~l~~~~~~~~i~v~aQn~~~~~~ga~TG~is~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~gl~~ivcvge~~~ 126 (226)
T d1w0ma_ 47 ELGLVSQSVDIPVYAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAPDPRT 126 (226)
T ss_dssp GHHHHHTTCSSCBEESCCSBSSCSSCTTCCBHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred hHHHHhhcccceecccccccccccccceeeeHhhhcccccceEEeechhhhhhccchHHHHHHHHHcCCEEEEecCchHH
Confidence 4556677778888886431 1 123467889999999974433 233344444433 3457888889999999
Q ss_pred HHHHHHhCCCEEEEcCC--CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeC
Q 021609 152 ALRRIREGAAMIRTKGE--AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFA 228 (310)
Q Consensus 152 a~~~~~~Gad~V~v~g~--~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA 228 (310)
+.++.+.+.++|...+. .+++...+. ...+ .-...++.+++. .++||+ .
T Consensus 127 ~~~~~~~~~~iIayep~waIGtg~~~~~----------------~~~~----------~i~~~i~~~~~~~~~i~vl--y 178 (226)
T d1w0ma_ 127 SLAAAALGPHAVAVEPPELIGTGRAVSR----------------YKPE----------AIVETVGLVSRHFPEVSVI--T 178 (226)
T ss_dssp HHHHHHTCCSEEEECCGGGTTTSCCHHH----------------HCHH----------HHHHHHHHHHHHCTTSEEE--E
T ss_pred hhhhhccccceeeecchhhccCCCCCCh----------------hhhh----------HhhhhhhhhhccCCCceEE--E
Confidence 99999999999987652 333321100 0000 011233333332 478998 5
Q ss_pred CCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 229 ~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
.|||++.+++..+++.|+||++|||++++++||.....+|.+.+.+
T Consensus 179 gGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~d~~~~i~~l~~~~~~ 224 (226)
T d1w0ma_ 179 GAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSE 224 (226)
T ss_dssp ESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ecCcCChHHHHHHhcCCCCEEEechheecCCCHHHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999998888887764
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.01 E-value=2.5e-09 Score=91.70 Aligned_cols=188 Identities=14% Similarity=0.107 Sum_probs=115.6
Q ss_pred HHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eC
Q 021609 46 EQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~ 121 (310)
+..+.++++|++++ +++- .....--.+ .++.++.+++.+++|+-+.+-.. ....++.+.++|+|.+. ..
T Consensus 18 ~~i~~~~~~g~d~iHiDimDg~Fvpn~s~-------g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~~H~ 90 (217)
T d2flia1 18 SELARIEETDAEYVHIDIMDGQFVPNISF-------GADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHT 90 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEEBSSSSSCBCB-------CHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEG
T ss_pred HHHHHHHHcCCCEEEEEcccCcCCCcccc-------CHHHHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEEecc
Confidence 67888999999998 4441 111100111 27899999998899988865443 34567888999999996 22
Q ss_pred CC-CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecccChhH
Q 021609 122 EV-LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDE 198 (310)
Q Consensus 122 ~~-~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~ 198 (310)
.. ..+.+..+.+++.+...-+.+...|.-+...-.-.-+|+|.+.+ ++++|- .
T Consensus 91 E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~~Gq-------------------~----- 146 (217)
T d2flia1 91 ESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQ-------------------A----- 146 (217)
T ss_dssp GGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSC-------------------C-----
T ss_pred ccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCccccc-------------------c-----
Confidence 22 23556666666654433333333333222111112356554332 222221 0
Q ss_pred HHHhhhccCCcHHHHHHHhh-----cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 199 VFTFAKKIAAPYDLVMQTKQ-----LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 199 ~~~~~~~~~~~~~~i~~i~~-----~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
-....++-++++++ ..++++. ..||| +.+++..+.++|||.+++||+|++++||.+..++|++.++
T Consensus 147 ------f~~~~~~ki~~l~~~~~~~~~~~~I~--vDGGI-n~~~i~~l~~aGad~~V~Gsaif~~~d~~~~i~~lr~~in 217 (217)
T d2flia1 147 ------FIPECLEKVATVAKWRDEKGLSFDIE--VDGGV-DNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 217 (217)
T ss_dssp ------CCGGGHHHHHHHHHHHHHTTCCCEEE--EESSC-CTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHC
T ss_pred ------cchhhHHHHHHHHHHHHhcCCCeEEE--EeCCC-CHHHHHHHHHCCCCEEEEchHHhCCCCHHHHHHHHHHhhC
Confidence 00112333333332 2356776 57999 5899999999999999999999999999999998888763
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=98.95 E-value=7.7e-09 Score=88.95 Aligned_cols=163 Identities=23% Similarity=0.254 Sum_probs=110.8
Q ss_pred HHHHHHHHhhcCcceeecccc----C---cHHHHHHHHHcCCCEEEeCCC---CCchhHHHHHHh-cCCCCcEEEecCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARI----G---HFVEAQILEAIGIDYVDESEV---LTPADEENHINK-HNFRIPFVCGCRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~----~---~~~~a~~~~~aGad~Vi~~~~---~~~~~~~~~i~~-~~~~i~~~v~~~t~ 149 (310)
+-.+..+.+..++++..++.. + -...++.+.+.|+++++..+. ....+..+.++. ...++.+++++.+.
T Consensus 47 ~~~L~~~~~~~~i~vgaQn~~~~~~Ga~TGeis~~~l~~~g~~~~iiGHSErr~~~~e~~~~i~~~~~~gl~~i~cv~~~ 126 (224)
T d1hg3a_ 47 LVDLRMIAESVEIPVFAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSNNP 126 (224)
T ss_dssp HHHHHHHHHSCSSCBEESCCCSCCSBSCTTCCCHHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred HHHHHhhccccceeeeecccccccccchhheechhhccccCcceeeeccccccccccchhHHHHHHHHcCCceeechhhH
Confidence 345666777788999886432 1 124567889999999973322 223333333333 33578888888899
Q ss_pred HHHHHHHHhCCCEEEEcC-C-CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEE
Q 021609 150 GEALRRIREGAAMIRTKG-E-AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVH 226 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~g-~-~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~ 226 (310)
.++..+.+.+.+++...+ | .+++.. .+++ ....-...++.+++. .++||+
T Consensus 127 ~~~~~~~~~~~~iiAyEpvwaIGtg~~-------------------~~~~-------~~~~i~~~i~~i~~~~~~v~vl- 179 (224)
T d1hg3a_ 127 AVSAAVAALNPDYVAVEPPELIGTGIP-------------------VSKA-------KPEVITNTVELVKKVNPEVKVL- 179 (224)
T ss_dssp HHHHHHHTTCCSEEEECCTTTTTTSCC-------------------TTTS-------CTHHHHHHHHHHHHHCTTSEEE-
T ss_pred HHHHhhhhcccceEEecchHhhccccC-------------------CCch-------hhhhhhhhhhhhhhhccccceE-
Confidence 999999999999998765 2 333310 0000 000012233334332 468998
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
.+|||++++|+..++..|+|||+||+++++++||...+++|+++
T Consensus 180 -ygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d~~~~~~~l~~~ 223 (224)
T d1hg3a_ 180 -CGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSG 223 (224)
T ss_dssp -EESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHHT
T ss_pred -EeCCcCCHHHHHHHHhCCCCEEEEcceeecCcCHHHHHHHHHhc
Confidence 57999999999999999999999999999999999998888764
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.92 E-value=2.1e-08 Score=92.37 Aligned_cols=192 Identities=16% Similarity=0.204 Sum_probs=116.2
Q ss_pred cceeecchhhhhhCcccccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcc--------
Q 021609 23 PFSVKVGLAQMLRGGVIMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIP-------- 94 (310)
Q Consensus 23 ~~~~~~~~~~~~~~g~i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iP-------- 94 (310)
.+....|++. ..+..++++++|..+.+.|.-.++.-+-.+++ ..+.+++++..-..|
T Consensus 41 ~~~l~iPIis----s~MDtV~~~~mA~~la~~Gglgvlhr~~~~e~-----------~~~~v~~v~~~e~~~~~~~d~~~ 105 (368)
T d2cu0a1 41 NVKLNIPILS----AAMDTVTEWEMAVAMAREGGLGVIHRNMGIEE-----------QVEQVKRVKRAEKYKNAVRDENG 105 (368)
T ss_dssp TEEESSSEEE----CCCTTTCSHHHHHHHHHTTCEEEECSSSCHHH-----------HHHHHHHHHTCCCCTTCCBCTTS
T ss_pred CcccCCCEEe----CCCCCcCCHHHHHHHHHCCCeeEecccCCHHH-----------HHHHHHhhhhhhhccccccccCc
Confidence 3455567777 77888999999999999997776443210000 023344443221111
Q ss_pred -eee--ccccCcHHHHHHHHHcCCCEEE--eCCCCC--chhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEc
Q 021609 95 -VMA--KARIGHFVEAQILEAIGIDYVD--ESEVLT--PADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 95 -v~v--k~~~~~~~~a~~~~~aGad~Vi--~~~~~~--~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~ 166 (310)
+.+ .......+.++.+.++|+|.++ .++.-. ..+..+.++. .++++++++ +.|.+-++. ..|+|.|.+.
T Consensus 106 ~~~v~~~~~~~~~~r~~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~-~~~~~vIaGNVaT~e~~~~--l~gaD~VkVG 182 (368)
T d2cu0a1 106 ELLVAAAVSPFDIKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQ-KVDADFIVGNIANPKAVDD--LTFADAVKVG 182 (368)
T ss_dssp CBCCEEEECTTCHHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHH-TCCSEEEEEEECCHHHHTT--CTTSSEEEEC
T ss_pred cEEEEeccChHHHHHHHHHHHcCCCEEEecCcccchhhhhhhhhhhhh-hcccceeeccccCHHHHHh--hhcCcceeec
Confidence 222 2222345778889999999995 444322 2223333333 345677766 788866543 3699999985
Q ss_pred CCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc-HHHHHHHh---hcCCCCEEEeCCCCCCCHHHHHHHH
Q 021609 167 GEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP-YDLVMQTK---QLGRLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 167 g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~~i~~i~---~~~~iPVi~iA~GGI~t~~d~~~~l 242 (310)
-.. |.+|++ +..+ +.+.| +..+.+.. ...++||| |.|||+++.|+.+++
T Consensus 183 IG~--Gs~CTT-----------r~~t------------GvG~Pq~sAi~e~~~~~~~~~~~ii--ADGGi~~~Gdi~KAl 235 (368)
T d2cu0a1 183 IGP--GSICTT-----------RIVA------------GVGVPQITAVAMVADRAQEYGLYVI--ADGGIRYSGDIVKAI 235 (368)
T ss_dssp SSC--STTBCH-----------HHHT------------CCCCCHHHHHHHHHHHHHHHTCEEE--EESCCCSHHHHHHHH
T ss_pred ccC--cccccc-----------hhhc------------ccccchHHHHHHHHHHHhccCCeeE--ecCCCCcCChhheee
Confidence 322 233321 0111 22333 33333332 22468998 889999999999999
Q ss_pred HcCCCEEEEccccccCC
Q 021609 243 QLGCDGVFVGSGVFKSG 259 (310)
Q Consensus 243 ~~GadgV~VGsai~~a~ 259 (310)
.+|||.||+|+.|..+.
T Consensus 236 a~GAd~VMlG~~lAg~~ 252 (368)
T d2cu0a1 236 AAGADAVMLGNLLAGTK 252 (368)
T ss_dssp HTTCSEEEESTTTTTBT
T ss_pred eeccceeeccchhcccc
Confidence 99999999999998854
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=4.3e-09 Score=88.63 Aligned_cols=160 Identities=13% Similarity=0.148 Sum_probs=103.4
Q ss_pred HHHHHHHHhhc-CcceeeccccC--cHHHHHHHHHcCCCEEEeCCCCCch---hHHHHHHhcCCCC-cEEEecCCHHHHH
Q 021609 81 PQLIKEIKQSV-TIPVMAKARIG--HFVEAQILEAIGIDYVDESEVLTPA---DEENHINKHNFRI-PFVCGCRNLGEAL 153 (310)
Q Consensus 81 ~~~i~~i~~~~-~iPv~vk~~~~--~~~~a~~~~~aGad~Vi~~~~~~~~---~~~~~i~~~~~~i-~~~v~~~t~~ea~ 153 (310)
++.++++++.+ +.++.....+. .....+.+.++|||.+..+...... .+.+.+++.+... .......+.+...
T Consensus 42 ~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 121 (213)
T d1q6oa_ 42 VRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQ 121 (213)
T ss_dssp THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHH
T ss_pred HHHHHHHHHhcccccceeEEeeccchHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecccCCCCCHHHHH
Confidence 57888888764 66766544332 2345677889999999644322333 3333333332222 2233456777777
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc---HHHHHHHhhcCCCCEEEeCCC
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP---YDLVMQTKQLGRLPVVHFAAG 230 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~---~~~i~~i~~~~~iPVi~iA~G 230 (310)
...+.+++.+.++-....+ + ...... ++.+++.++ .+.|+. ..|
T Consensus 122 ~~~~~~~~~~~~~~~~~~g-----------------------------~-~~~~~~~~~l~~i~~~~~-~~~~i~--~~g 168 (213)
T d1q6oa_ 122 QWRDAGIGQVVYHRSRDAQ-----------------------------A-AGVAWGEADITAIKRLSD-MGFKVT--VTG 168 (213)
T ss_dssp HHHHTTCCEEEEECCHHHH-----------------------------H-TTCCCCHHHHHHHHHHHH-TTCEEE--EES
T ss_pred HHHHhHHHHHHHHHhcccC-----------------------------c-CCeeCCHHHHHHHHHhhc-cCceEe--cCC
Confidence 7888899887764211000 0 001111 334444444 467776 578
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
|+ +++++.++.++|||.++|||+|++++||.+.++++++.+++
T Consensus 169 Gi-~~~~~~~~~~~Gad~iVVGr~I~~a~dp~~a~~~~~~~i~~ 211 (213)
T d1q6oa_ 169 GL-ALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE 211 (213)
T ss_dssp SC-CGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred Cc-CcCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHHHHHHHH
Confidence 98 69999999999999999999999999999999999999875
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.90 E-value=2.3e-08 Score=85.77 Aligned_cols=189 Identities=13% Similarity=0.127 Sum_probs=121.6
Q ss_pred HHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eC
Q 021609 46 EQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~ 121 (310)
+..+.+.++|++++ +|+- .....--.+ .++.++.+++.+..|+-+..-.. ....++.+.++|++.+. ..
T Consensus 18 ~ei~~l~~~~~d~iHiDimDg~Fvpn~t~-------~~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~~H~ 90 (220)
T d1h1ya_ 18 AEADRMVRLGADWLHMDIMDGHFVPNLTI-------GAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHI 90 (220)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCB-------CHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEG
T ss_pred HHHHHHHHcCCCEEEEeeecCcccccccc-------CchhhhhhhhhcchhhhhHHHhcchhhhhHHhhhcccceeeecc
Confidence 67778899999998 4441 111100112 27899999998888888764432 34567889999999995 22
Q ss_pred CC--CCchhHHHHHHhcCCCCcEEEecCC-HHHHHHHHHh--CCCEEEEcC--CCCCcchHHHHHHHHhhccceEeeccc
Q 021609 122 EV--LTPADEENHINKHNFRIPFVCGCRN-LGEALRRIRE--GAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 122 ~~--~~~~~~~~~i~~~~~~i~~~v~~~t-~~ea~~~~~~--Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
.. -...++...+++.+...-+.....| .+........ -+|+|.+.. ++++|- .
T Consensus 91 E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v~PG~~GQ-------------------~- 150 (220)
T d1h1ya_ 91 EVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQ-------------------K- 150 (220)
T ss_dssp GGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSC-------------------C-
T ss_pred cccchhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccceEEEEecCCCCccc-------------------c-
Confidence 22 2244566666655433333333333 3333333332 357765543 233331 0
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
-....++-++++++. .++++. ..||| +.+++..+.++|+|.+++||+|++++||.+..++|++.++
T Consensus 151 ----------f~~~~l~kI~~l~~~~~~~~I~--VDGGI-n~~~i~~l~~aGad~~V~GS~if~~~d~~~~i~~lr~~~~ 217 (220)
T d1h1ya_ 151 ----------FMPEMMEKVRALRKKYPSLDIE--VDGGL-GPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVE 217 (220)
T ss_dssp ----------CCGGGHHHHHHHHHHCTTSEEE--EESSC-STTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred ----------cchhhhHHHHHHHhcCCCceEE--EEecC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Confidence 011224555666543 467777 57999 6899999999999999999999999999999999988886
Q ss_pred c
Q 021609 274 H 274 (310)
Q Consensus 274 ~ 274 (310)
.
T Consensus 218 ~ 218 (220)
T d1h1ya_ 218 G 218 (220)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=98.89 E-value=8.9e-09 Score=93.25 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCcc
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSD 299 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (310)
.++||+ +.|||+++.|+.+++.+|||+|++|+.++. ..+..=.+.+. +-+..+..++.+.|-.+|.++
T Consensus 230 ~~v~vi--adGGIr~g~Dv~KAlalGAdaV~iGr~~l~-----al~~~G~~gv~-----~~l~~l~~el~~~m~~~G~~~ 297 (329)
T d1p0ka_ 230 PASTMI--ASGGLQDALDVAKAIALGASCTGMAGHFLK-----ALTDSGEEGLL-----EEIQLILEELKLIMTVLGART 297 (329)
T ss_dssp TTSEEE--EESSCCSHHHHHHHHHTTCSEEEECHHHHH-----HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTCCB
T ss_pred CCceEE--EcCCcccHHHHHHHHHcCCCchhccHHHHH-----HhccCCHHHHH-----HHHHHHHHHHHHHHHHhCCCC
Confidence 469998 789999999999999999999999998874 22221222222 334567778888888888877
Q ss_pred ch
Q 021609 300 HK 301 (310)
Q Consensus 300 ~~ 301 (310)
++
T Consensus 298 i~ 299 (329)
T d1p0ka_ 298 IA 299 (329)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=98.83 E-value=2.9e-09 Score=95.79 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=65.4
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCG 287 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~ 287 (310)
...+.++.+.. ++|++ ++|||+|++|+.+++.+|||.|+++|+++. +.| ...+++.+.++++++.+++.++++.
T Consensus 229 l~~i~~i~~~~~~~~~Ii--g~GGI~s~~Da~~~i~aGA~~Vql~tal~~-~Gp-~~i~~i~~~L~~~m~~~G~~si~e~ 304 (311)
T d1juba_ 229 LANVRAFYTRLKPEIQII--GTGGIETGQDAFEHLLCGATMLQIGTALHK-EGP-AIFDRIIKELEEIMNQKGYQSIADF 304 (311)
T ss_dssp HHHHHHHHTTSCTTSEEE--EESSCCSHHHHHHHHHHTCSEEEECHHHHH-HCT-HHHHHHHHHHHHHHHHHTCCSGGGT
T ss_pred HHHHHHHHHhcCCCeeEE--ecCCcCCHHHHHHHHHcCCCceeeeHhhHh-cCh-HHHHHHHHHHHHHHHHcCCCCHHHh
Confidence 34556665543 58998 889999999999999999999999999986 245 4677899999999999999999999
Q ss_pred ccc
Q 021609 288 LGE 290 (310)
Q Consensus 288 ~~~ 290 (310)
.|+
T Consensus 305 ~G~ 307 (311)
T d1juba_ 305 HGK 307 (311)
T ss_dssp TTC
T ss_pred cCc
Confidence 985
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=98.80 E-value=7.9e-08 Score=81.79 Aligned_cols=155 Identities=16% Similarity=0.131 Sum_probs=113.3
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccCcHHHHHHHHHcCCCEEEeCCC
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIGHFVEAQILEAIGIDYVDESEV 123 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~~ 123 (310)
+.++++.++|...+ +-++ . . ...+.++.+++.+ ++-+.+.... ..++++.+.++||++++.+.
T Consensus 33 ~~~~al~~~Gi~~iEitl~-------~-p-----~a~~~i~~l~~~~p~~~vGaGTV~-~~~~~~~a~~aGa~FivsP~- 97 (216)
T d1mxsa_ 33 PLADALAAGGIRTLEVTLR-------S-Q-----HGLKAIQVLREQRPELCVGAGTVL-DRSMFAAVEAAGAQFVVTPG- 97 (216)
T ss_dssp HHHHHHHHTTCCEEEEESS-------S-T-----HHHHHHHHHHHHCTTSEEEEECCC-SHHHHHHHHHHTCSSEECSS-
T ss_pred HHHHHHHHCCCCEEEEeCC-------C-h-----hHHHHHHHHHHhCCCcceeeeeee-cHHHHHHHHhCCCCEEECCC-
Confidence 67889999999976 3332 1 0 0157888888775 5555554443 35889999999999997554
Q ss_pred CCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhh
Q 021609 124 LTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203 (310)
Q Consensus 124 ~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~ 203 (310)
...++.+..++ .+++++.++.|+.|+..+.++|+++|++++...
T Consensus 98 -~~~~v~~~a~~--~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~--------------------------------- 141 (216)
T d1mxsa_ 98 -ITEDILEAGVD--SEIPLLPGISTPSEIMMGYALGYRRFKLFPAEI--------------------------------- 141 (216)
T ss_dssp -CCHHHHHHHHH--CSSCEECEECSHHHHHHHHTTTCCEEEETTHHH---------------------------------
T ss_pred -CcHHHHHHHHh--cCCCccCCcCCHHHHHHHHHCCCCEEEeccccc---------------------------------
Confidence 24566665543 679999999999999999999999999986321
Q ss_pred hccCCcHHHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 204 KKIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 204 ~~~~~~~~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
......++.++. ..++|++ +.||| +.+++.+++++|+-.++.||.++.
T Consensus 142 ---~~g~~~ikal~~p~p~~~fi--ptGGV-~~~n~~~yl~~~~v~avggs~l~~ 190 (216)
T d1mxsa_ 142 ---SGGVAAIKAFGGPFGDIRFC--PTGGV-NPANVRNYMALPNVMCVGTTWMLD 190 (216)
T ss_dssp ---HTHHHHHHHHHTTTTTCEEE--EBSSC-CTTTHHHHHHSTTBCCEEECTTSC
T ss_pred ---cccHHHHHHHhcccccCcee--ccCCC-CHHHHHHHHhcCCeEEEEccccCC
Confidence 011223444443 2468888 79999 699999999999989999999985
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.80 E-value=5.4e-08 Score=83.42 Aligned_cols=190 Identities=12% Similarity=0.064 Sum_probs=117.0
Q ss_pred HHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHhhc-CcceeeccccC-cHHHHHHHHHcCCCEEEe-
Q 021609 46 EQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQSV-TIPVMAKARIG-HFVEAQILEAIGIDYVDE- 120 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~-~iPv~vk~~~~-~~~~a~~~~~aGad~Vi~- 120 (310)
+..+.+.++|++++ +|+- .....--.+ .++.++.+++.+ ++|+-+..-.. ....++.+.++|++.+..
T Consensus 19 ~~i~~l~~~~~d~iHiDimDG~Fvpn~t~-------g~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~~~~~~~i~~~ 91 (221)
T d1tqxa_ 19 EETQRMESLGAEWIHLDVMDMHFVPNLSF-------GPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTFHFE 91 (221)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCC-------CHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTTSSEEEEEGG
T ss_pred HHHHHHHHcCCCEEEEECccCcCcCcccc-------ChHHHhhhhhcCCchhhhhhHHhhhhhhhhhhhhhcCceeEEee
Confidence 66778899999998 4441 111000111 278899998874 78888765432 223345566788888853
Q ss_pred CCCCCchhHHHHHHh-cCCCCcEEEe--cCCH-HHHHHHHH-hCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecc
Q 021609 121 SEVLTPADEENHINK-HNFRIPFVCG--CRNL-GEALRRIR-EGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 121 ~~~~~~~~~~~~i~~-~~~~i~~~v~--~~t~-~ea~~~~~-~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
.......+....++. +..++.+++. ..|. +....... ..+|+|-+.+ ++++|- .
T Consensus 92 ~~~~~~~~~~~~i~~i~~~g~~~Gial~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ-------------------~ 152 (221)
T d1tqxa_ 92 ALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQ-------------------S 152 (221)
T ss_dssp GGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSC-------------------C
T ss_pred hhccccchhhHHHHHHHhcCCeEEEeeccccccccchhhcccccccEEEEEeeccccccc-------------------c
Confidence 333344444444333 2334444433 3343 33333433 3578775443 222221 0
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
-....++-++++++. .++.+. ..||| +.+++..+.++|||.+++||+|++++||.+..++|++.+
T Consensus 153 -----------f~~~~l~KI~~lr~~~~~~~I~--VDGGI-n~~~i~~l~~aGad~iV~GS~if~~~d~~~~i~~Lr~~i 218 (221)
T d1tqxa_ 153 -----------FMHDMMGKVSFLRKKYKNLNIQ--VDGGL-NIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSV 218 (221)
T ss_dssp -----------CCGGGHHHHHHHHHHCTTCEEE--EESSC-CHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred -----------cCcchhHHHHHHHHhcCCcceE--EEccc-CHHhHHHHHHcCCCEEEEChHHHCCCCHHHHHHHHHHHH
Confidence 012234555556554 356666 47999 689999999999999999999999999999999999998
Q ss_pred hcc
Q 021609 273 THY 275 (310)
Q Consensus 273 ~~~ 275 (310)
++|
T Consensus 219 ~k~ 221 (221)
T d1tqxa_ 219 QKY 221 (221)
T ss_dssp HHC
T ss_pred hhC
Confidence 865
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=98.79 E-value=3.2e-08 Score=85.33 Aligned_cols=184 Identities=16% Similarity=0.165 Sum_probs=113.3
Q ss_pred HHHHHHHHcCCcEE-Eec-cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eC
Q 021609 46 EQARVAEEAGACAV-MAL-ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L-~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~ 121 (310)
+..+.+.++|++++ +|+ +.....--.+ .++.++.+++.+++|+-+.+-.. ....++.+.++|+|.+. ..
T Consensus 27 ~~i~~l~~~g~d~iHiDImDG~Fvpn~t~-------~~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~ 99 (230)
T d1rpxa_ 27 EQVKAIEQAGCDWIHVDVMDGRFVPNITI-------GPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHC 99 (230)
T ss_dssp HHHHHHHHTTCCCEEEEEEBSSSSSCBCC-------CHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEEC
T ss_pred HHHHHHHHcCCCEEEEeCccCCcCCcccc-------ChHHHhhhhhccCceeeeeeeecchhhhHHHHhhcccceeEEec
Confidence 67788899999998 444 1111101112 27899999988999988876543 34667889999999995 33
Q ss_pred CC---CCchhHHHHHHhcCCCCcEEEecCCH-HHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecccC
Q 021609 122 EV---LTPADEENHINKHNFRIPFVCGCRNL-GEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 122 ~~---~~~~~~~~~i~~~~~~i~~~v~~~t~-~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
.. ..+.++.+.+++++...-+.....|. +....... -+|+|.+.+ ++++|- .
T Consensus 100 E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~-~vD~VllM~V~PGf~GQ-------------------~-- 157 (230)
T d1rpxa_ 100 EQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLD-AVDLVLIMSVNPGFGGQ-------------------S-- 157 (230)
T ss_dssp STTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTT-TCSEEEEESSCTTCSSC-------------------C--
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHh-hCCEEEEEEecCCcccc-------------------h--
Confidence 32 23556666766554333333333333 22222222 366665442 222221 0
Q ss_pred hhHHHHhhhccCCcHHHHHHHhh-----cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQ-----LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~-----~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
-....++-++++++ ..++.+. ..||| +.+++..+.++|||.+++||+|++++||.+..++|++
T Consensus 158 ---------f~~~~~~kI~~~~~~~~~~~~~~~I~--vDGGI-n~~~i~~l~~~Gad~~V~GS~if~~~d~~~~i~~lk~ 225 (230)
T d1rpxa_ 158 ---------FIESQVKKISDLRKICAERGLNPWIE--VDGGV-GPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKT 225 (230)
T ss_dssp ---------CCTTHHHHHHHHHHHHHHHTCCCEEE--EESSC-CTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred ---------hhhhhHHHHHHHHHHHHhcCCceEEE--EECCc-CHHHHHHHHHcCCCEEEEChHHHCCCCHHHHHHHHHH
Confidence 01112333333322 2456666 47999 6899999999999999999999999999877776654
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.77 E-value=1.7e-09 Score=101.36 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=65.9
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhh
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCG 287 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~ 287 (310)
...++++++.. ++|+| +.|||.|++|+.+.+.+||+.|+++|+++. ..| ...+++.+.+.++++.+++.++++.
T Consensus 329 l~~v~~v~~~~~~~ipII--GvGGI~s~~Da~e~i~AGAs~VQv~T~li~-~Gp-~~v~~I~~~L~~~l~~~g~~~i~e~ 404 (409)
T d1tv5a1 329 TKFICEMYNYTNKQIPII--ASGGIFSGLDALEKIEAGASVCQLYSCLVF-NGM-KSAVQIKRELNHLLYQRGYYNLKEA 404 (409)
T ss_dssp HHHHHHHHHHTTTCSCEE--EESSCCSHHHHHHHHHTTEEEEEESHHHHH-HGG-GHHHHHHHHHHHHHHHHTCSSSGGG
T ss_pred HHHHHHHHHHcCCCceEE--EECCCCCHHHHHHHHHcCCCHHhhhhHHHh-cCh-HHHHHHHHHHHHHHHHcCCCCHHHh
Confidence 44566666554 59998 789999999999999999999999999865 244 4677799999999999999999999
Q ss_pred cccc
Q 021609 288 LGEA 291 (310)
Q Consensus 288 ~~~~ 291 (310)
.|.+
T Consensus 405 iG~~ 408 (409)
T d1tv5a1 405 IGRK 408 (409)
T ss_dssp TTTT
T ss_pred cCCC
Confidence 9865
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=3.5e-09 Score=97.66 Aligned_cols=77 Identities=19% Similarity=0.305 Sum_probs=64.5
Q ss_pred HHHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhc
Q 021609 211 DLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGL 288 (310)
Q Consensus 211 ~~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~ 288 (310)
..++.+++. .++|++ +.|||.+++|+.+.+.+|||.|+++|+++. .+| ...+++.+.+++|++.+++.++++..
T Consensus 286 ~~v~~v~~~~~~~ipIi--g~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~-~Gp-~ii~~I~~~L~~~l~~~G~~si~dl~ 361 (367)
T d1d3ga_ 286 QTIREMYALTQGRVPII--GVGGVSSGQDALEKIRAGASLVQLYTALTF-WGP-PVVGKVKRELEALLKEQGFGGVTDAI 361 (367)
T ss_dssp HHHHHHHHHTTTCSCEE--EESSCCSHHHHHHHHHHTCSEEEESHHHHH-HCT-HHHHHHHHHHHHHHHHTTCSSHHHHT
T ss_pred HHHHHHHHHhCCCccEE--EECCCCCHHHHHHHHHcCCCHHHhhHHHHh-cCc-HHHHHHHHHHHHHHHHcCCCCHHHhc
Confidence 344455443 369998 789999999999999999999999999764 366 46677999999999999999999999
Q ss_pred ccc
Q 021609 289 GEA 291 (310)
Q Consensus 289 ~~~ 291 (310)
|.+
T Consensus 362 G~a 364 (367)
T d1d3ga_ 362 GAD 364 (367)
T ss_dssp TGG
T ss_pred Chh
Confidence 975
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=98.65 E-value=1.3e-07 Score=80.97 Aligned_cols=184 Identities=14% Similarity=0.093 Sum_probs=107.9
Q ss_pred HHHHHHHHcCCcEE-Eecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcCCCEEE-eC
Q 021609 46 EQARVAEEAGACAV-MALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIGIDYVD-ES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aGad~Vi-~~ 121 (310)
+..+.+.++|++++ +|+- .....--.+ .++.++.+++.+++|+-+.+-.. ....++.+.++|++.+. ..
T Consensus 19 ~~i~~l~~~g~d~iHiDImDG~Fvpn~t~-------~~~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~ 91 (221)
T d1tqja_ 19 EEIKAVDEAGADWIHVDVMDGRFVPNITI-------GPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHV 91 (221)
T ss_dssp HHHHHHHHTTCSEEEEEEEBSSSSSCBCB-------CHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEEC
T ss_pred HHHHHHHHcCCCEEEEECccCCccCcccc-------CcHhHHhhhhccCcceeeeEEEeCHHHHHHHHhhccceEEEEee
Confidence 66778899999998 4441 111111111 27889999888888887765432 34557888999999995 33
Q ss_pred CCCC---chhHHHHHHhcCCCCcEEEecCCH-HHHHHHHHhCCCEEEEcC--CCCCcchHHHHHHHHhhccceEeecccC
Q 021609 122 EVLT---PADEENHINKHNFRIPFVCGCRNL-GEALRRIREGAAMIRTKG--EAGTGNIIEAVRHVRSVMGDIRVLRNMD 195 (310)
Q Consensus 122 ~~~~---~~~~~~~i~~~~~~i~~~v~~~t~-~ea~~~~~~Gad~V~v~g--~~~~~~~~~~~~~~r~~~~~~~~l~~~~ 195 (310)
.... ..+....++..+...-+.....|. ++.....+ -+|+|.+.+ ++++|- .
T Consensus 92 E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~-~~d~vlvM~V~pG~~GQ-------------------~-- 149 (221)
T d1tqja_ 92 EHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLP-VCDLILIMSVNPGFGGQ-------------------S-- 149 (221)
T ss_dssp STTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGG-GCSEEEEESSCC----C-------------------C--
T ss_pred ccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHh-hhcEEEEEEecCCCCCc-------------------c--
Confidence 3222 234445554433332233333333 22222222 355554432 122220 0
Q ss_pred hhHHHHhhhccCCcHHHHHHHhh-----cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 196 DDEVFTFAKKIAAPYDLVMQTKQ-----LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 196 ~d~~~~~~~~~~~~~~~i~~i~~-----~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
-....++-++++++ ..++++. ..||| +.+++..+.++|||.+++||+|++++||.+..++|++
T Consensus 150 ---------f~~~~~~ki~~l~~~~~~~~~~~~I~--VDGGI-n~~~i~~l~~~Gad~~V~GS~if~~~d~~~~i~~lr~ 217 (221)
T d1tqja_ 150 ---------FIPEVLPKIRALRQMCDERGLDPWIE--VDGGL-KPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRN 217 (221)
T ss_dssp ---------CCGGGHHHHHHHHHHHHHHTCCCEEE--EESSC-CTTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred ---------cchhhHHHHHHHHhhhhccccceEEE--EECCc-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHh
Confidence 01112333333322 1356666 47999 6899999999999999999999999999887776654
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=98.63 E-value=1.6e-07 Score=83.58 Aligned_cols=77 Identities=23% Similarity=0.371 Sum_probs=52.6
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC--CCHHHHHHHHHHHHhccCChhhhhhhhh
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS--GDPVKRAQAIVRAVTHYSDPEVLAEVSC 286 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a--~dp~~~a~~l~~~i~~~~~~~~~~~~~~ 286 (310)
.+.+..+.+. .++||+ +.|||++..|+.+++.+|||+|++||+++.+ .-+. .+ .+.+..+.+
T Consensus 222 ~~al~~~~~~~~~i~Ii--~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~~~~G~~--------gv-----~~~l~~l~~ 286 (310)
T d1vcfa1 222 ARAILEVREVLPHLPLV--ASGGVYTGTDGAKALALGADLLAVARPLLRPALEGAE--------RV-----AAWIGDYLE 286 (310)
T ss_dssp HHHHHHHHHHCSSSCEE--EESSCCSHHHHHHHHHHTCSEEEECGGGHHHHTTCHH--------HH-----HHHHHHHHH
T ss_pred HHHHHHHHhhcCCCeEE--eCCCCCchHHHHHHHHhCCCEeeEhHHHHHHhccCHH--------HH-----HHHHHHHHH
Confidence 3344444333 479998 6899999999999999999999999998741 0110 00 123456666
Q ss_pred hcccchhcccCccch
Q 021609 287 GLGEAMVGLNLSDHK 301 (310)
Q Consensus 287 ~~~~~~~~~~~~~~~ 301 (310)
++...|-.+|.++++
T Consensus 287 El~~~m~~~G~~~i~ 301 (310)
T d1vcfa1 287 ELRTALFAIGARNPK 301 (310)
T ss_dssp HHHHHHHHHTCSSGG
T ss_pred HHHHHHHHhCCCCHH
Confidence 777777777766553
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.62 E-value=1.2e-07 Score=86.67 Aligned_cols=121 Identities=22% Similarity=0.288 Sum_probs=88.0
Q ss_pred CCcE-EEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIPF-VCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~~-~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
+.++ .-++.+.+++.++.+.|+|.+.+.++++.. +. ...++.+.+.+++
T Consensus 217 ~~pii~Kgi~~~~da~~a~~~G~d~i~vsnhggr~------------------~d------------~~~~~~~~l~~i~ 266 (349)
T d1tb3a1 217 RLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQ------------------LD------------EVSASIDALREVV 266 (349)
T ss_dssp CSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTS------------------SC------------SBCCHHHHHHHHH
T ss_pred CCCcccchhhhhHHHHHHHHhhccceeeecccccc------------------cc------------ccccchhhcceee
Confidence 4444 446899999999999999999988765421 00 1233455555565
Q ss_pred hc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcc
Q 021609 218 QL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGL 295 (310)
Q Consensus 218 ~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~ 295 (310)
+. .++||+ ++|||++..|+.+++.+|||+|.+|+.++. ..+..=.+.+ .+.+..+.+++..+|..+
T Consensus 267 ~~~~~~~~ii--adGGIR~G~Dv~KALALGA~~V~igrp~L~-----~la~~G~~gv-----~~~l~~l~~EL~~~M~l~ 334 (349)
T d1tb3a1 267 AAVKGKIEVY--MDGGVRTGTDVLKALALGARCIFLGRPILW-----GLACKGEDGV-----KEVLDILTAELHRCMTLS 334 (349)
T ss_dssp HHHTTSSEEE--EESSCCSHHHHHHHHHTTCSCEEESHHHHH-----HHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred eccCCCeeEE--eccCcCcHHHHHHHHHcCCCEEEEChHHHH-----HHHhccHHHH-----HHHHHHHHHHHHHHHHHh
Confidence 43 468998 799999999999999999999999998884 2221112233 234568889999999999
Q ss_pred cCccch
Q 021609 296 NLSDHK 301 (310)
Q Consensus 296 ~~~~~~ 301 (310)
|.++++
T Consensus 335 G~~~i~ 340 (349)
T d1tb3a1 335 GCQSVA 340 (349)
T ss_dssp TCSBGG
T ss_pred CCCCHH
Confidence 998875
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.53 E-value=2.6e-08 Score=89.55 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=64.2
Q ss_pred HHHHHHHhhcC-CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhc
Q 021609 210 YDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGL 288 (310)
Q Consensus 210 ~~~i~~i~~~~-~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~ 288 (310)
...+..+.+.. ..|++ +.|||.|++|+.+.+.+||+.|+++|+++.. .| ...+++.+.+.+|++.+++.++++..
T Consensus 230 l~~v~~~~~~~~~~~Ii--g~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~-Gp-~~i~~i~~~L~~~l~~~G~~si~e~~ 305 (312)
T d2b4ga1 230 LANVNAFFRRCPDKLVF--GCGGVYSGEEAFLHILAGASMVQVGTALHDE-GP-IIFARLNKELQEIMTNKGYKTLDEFR 305 (312)
T ss_dssp HHHHHHHHHHCTTSEEE--EESSCCSHHHHHHHHHHTEEEEEESHHHHHH-CT-THHHHHHHHHHHHHHHHTCCSGGGTT
T ss_pred hHHHHHHHHHcCCCcee--ecCCcCCHHHHHHHHHcCCChheeehhhHhc-Cc-HHHHHHHHHHHHHHHHcCCCCHHHHc
Confidence 34555555443 45555 8899999999999999999999999999862 45 46677999999999999999999999
Q ss_pred ccc
Q 021609 289 GEA 291 (310)
Q Consensus 289 ~~~ 291 (310)
|.+
T Consensus 306 G~~ 308 (312)
T d2b4ga1 306 GRV 308 (312)
T ss_dssp TCC
T ss_pred Cee
Confidence 964
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=6.7e-07 Score=80.93 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=43.3
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
....+++++.+++||+ +.|||.+++++.++++.| ||.|.+|++++. ||.
T Consensus 269 ~~~~~~ik~~~~~pvi--~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia--dP~ 318 (330)
T d1ps9a1 269 SWVTRKLKGHVSLPLV--TTNRINDPQVADDILSRGDADMVSMARPFLA--DAE 318 (330)
T ss_dssp HHHHHHHTTSCSSCEE--ECSSCCSHHHHHHHHHTTSCSEEEESTHHHH--CTT
T ss_pred HHHHHHHHhhCCceEE--EeCCCCCHHHHHHHHHCCCcchhHhhHHHHh--Chh
Confidence 4566778888899998 679999999999999988 999999999997 665
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=98.45 E-value=1.6e-06 Score=78.57 Aligned_cols=151 Identities=21% Similarity=0.280 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCcEEEecc------------C-CcccccccCCCC--CCC-CHHHHHHHHhhcCcceeeccccCcHHHHHH
Q 021609 46 EQARVAEEAGACAVMALE------------R-VPADIRSQGGVA--RMS-DPQLIKEIKQSVTIPVMAKARIGHFVEAQI 109 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~------------~-~~~~~~~~~G~~--~~~-~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~ 109 (310)
+.|+.+.++|+|+| +|. | .+.....+||+- +++ ..+.++.|++.++-|+.++.......
T Consensus 147 ~AA~ra~~AGfDGV-EiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~---- 221 (337)
T d1z41a1 147 QAAARAKEAGFDVI-EIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYT---- 221 (337)
T ss_dssp HHHHHHHHTTCSEE-EEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCS----
T ss_pred HHHHHHHHcCCCeE-EeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccc----
Confidence 36888899999998 442 2 244555667762 111 23567778888888988865432100
Q ss_pred HHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceE
Q 021609 110 LEAIGIDYVDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIR 189 (310)
Q Consensus 110 ~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~ 189 (310)
....+..+.. +-+..+.+.|.|++.++...+...
T Consensus 222 -----------~~g~~~~~~~-------------------~~~~~l~~~g~d~~~~s~g~~~~~---------------- 255 (337)
T d1z41a1 222 -----------DKGLDIADHI-------------------GFAKWMKEQGVDLIDCSSGALVHA---------------- 255 (337)
T ss_dssp -----------TTSCCHHHHH-------------------HHHHHHHHTTCCEEEEECCCSSCC----------------
T ss_pred -----------cCccchhhhH-------------------HHHHHHHHcCCccccccccccccc----------------
Confidence 0011111111 224445678899888764432110
Q ss_pred eecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 190 VLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 190 ~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
... ........+.+.+++.+++||+ +.|+|.+++++.++++.| ||.|.+|++++. ||.
T Consensus 256 ---~~~--------~~~~~~~~~~~~ik~~~~~pvi--~~G~i~~~~~ae~~l~~g~~D~V~~gR~~ia--dPd 314 (337)
T d1z41a1 256 ---DIN--------VFPGYQVSFAEKIREQADMATG--AVGMITDGSMAEEILQNGRADLIFIGRELLR--DPF 314 (337)
T ss_dssp ---CCC--------CCTTTTHHHHHHHHHHHCCEEE--ECSSCCSHHHHHHHHHTTSCSEEEECHHHHH--CTT
T ss_pred ---ccc--------cCCcccHHHHHHHHHhcCceEE--EeCCcCCHHHHHHHHHCCCcceehhhHHHHh--Cch
Confidence 000 0112335667778888889998 679999999999999988 999999999998 664
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.45 E-value=4.2e-07 Score=82.59 Aligned_cols=119 Identities=21% Similarity=0.264 Sum_probs=84.9
Q ss_pred cEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC
Q 021609 141 PFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG 220 (310)
Q Consensus 141 ~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~ 220 (310)
..+.++.+.+++.++.+.|++.+.+..+++..- . ...+..+.+.++....
T Consensus 225 i~~kgv~~~~~~~~a~~~g~~~~~~s~~gg~~~------------------~------------~~~~~~~~l~~i~~~~ 274 (353)
T d1p4ca_ 225 LLVKGLLSAEDADRCIAEGADGVILSNHGGRQL------------------D------------CAISPMEVLAQSVAKT 274 (353)
T ss_dssp EEEEEECCHHHHHHHHHTTCSEEEECCGGGTSC------------------T------------TCCCGGGTHHHHHHHH
T ss_pred hhhhcchhhhhHHHHHhcCCchhhhcccccccc------------------c------------ccccchhcccchhccc
Confidence 455668899999999999999887765533110 0 1122344445555545
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccCccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNLSDH 300 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (310)
++||+ ++|||+++-|+.+++.+|||+|.+|+.++. ..+..=.+.+ .+.+..+..++..+|..+|.+++
T Consensus 275 ~~~vi--asGGIR~G~Dv~KALaLGAd~vgigrp~L~-----~l~~~G~egv-----~~~l~~l~~El~~~M~l~G~~~i 342 (353)
T d1p4ca_ 275 GKPVL--IDSGFRRGSDIVKALALGAEAVLLGRATLY-----GLAARGETGV-----DEVLTLLKADIDRTLAQIGCPDI 342 (353)
T ss_dssp CSCEE--ECSSCCSHHHHHHHHHTTCSCEEESHHHHH-----HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTCCBG
T ss_pred cccee--ecCCcCchHHHHHHHHcCCCEEEEcHHHHH-----HHHhccHHHH-----HHHHHHHHHHHHHHHHHhCCCCH
Confidence 78998 799999999999999999999999998774 1122122233 23456788899999999999887
Q ss_pred h
Q 021609 301 K 301 (310)
Q Consensus 301 ~ 301 (310)
+
T Consensus 343 ~ 343 (353)
T d1p4ca_ 343 T 343 (353)
T ss_dssp G
T ss_pred H
Confidence 5
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=98.38 E-value=2.8e-05 Score=66.77 Aligned_cols=169 Identities=21% Similarity=0.278 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeecccc--Cc-----------HHHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARI--GH-----------FVEAQ 108 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~-----------~~~a~ 108 (310)
+.+++-|..++++||+.| +||.. .. .+| +.+++..++.+++.+++||-+..|. ++ .++++
T Consensus 7 v~s~~~a~~A~~~GAdRI-ELc~~---l~-~GG--lTPS~g~i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~ 79 (247)
T d1twda_ 7 CYSMECALTAQQNGADRV-ELCAA---PK-EGG--LTPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVR 79 (247)
T ss_dssp ESSHHHHHHHHHTTCSEE-EECBC---GG-GTC--BCCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHcCCCEE-EEcCC---cc-cCC--CCCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 356789999999999998 88622 11 122 3567899999999999999887664 21 26678
Q ss_pred HHHHcCCCEEE-eC---CC-CCchhHHHHHHhcCCCCcEEE----e-cCCHHHHHH-HHHhCCCEEEEcCCCCCcchHHH
Q 021609 109 ILEAIGIDYVD-ES---EV-LTPADEENHINKHNFRIPFVC----G-CRNLGEALR-RIREGAAMIRTKGEAGTGNIIEA 177 (310)
Q Consensus 109 ~~~~aGad~Vi-~~---~~-~~~~~~~~~i~~~~~~i~~~v----~-~~t~~ea~~-~~~~Gad~V~v~g~~~~~~~~~~ 177 (310)
.+.+.|+|+|+ +. +. +....+.+++...+ +++++. | +.+..++.. +.++|++-|-++|...+
T Consensus 80 ~~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a~-~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSGg~~~------ 152 (247)
T d1twda_ 80 TVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAG-PLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSD------ 152 (247)
T ss_dssp HHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT-TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSSS------
T ss_pred HHHHcCCCeEEEEEECCCCCccHHHHHHHHHHhc-ccCeeeehhhhhhCCHHHHHHHHHhcCCCeEeccCCCCc------
Confidence 88999999996 22 22 33444444444322 222221 1 335544444 56778887777653211
Q ss_pred HHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 178 ~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
.....+.++++.+..+-++| +++||| +++++..++++|+..+-.+..
T Consensus 153 ----------------------------a~~G~~~L~~L~~~a~~~iI-m~GgGI-~~~Ni~~l~~~g~~e~H~sa~ 199 (247)
T d1twda_ 153 ----------------------------ALQGLSKIMELIAHRDAPII-MAGAGV-RAENLHHFLDAGVLEVHSSAG 199 (247)
T ss_dssp ----------------------------TTTTHHHHHHHHTSSSCCEE-EEESSC-CTTTHHHHHHHTCSEEEECCE
T ss_pred ----------------------------hhHHHHHHHHHHHhcCCcEE-EecCCC-CHHHHHHHHHcCCCEEEECCC
Confidence 11224556666554443444 379999 699999999999999886543
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.36 E-value=1.7e-06 Score=78.91 Aligned_cols=120 Identities=25% Similarity=0.260 Sum_probs=85.1
Q ss_pred CcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc
Q 021609 140 IPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL 219 (310)
Q Consensus 140 i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~ 219 (310)
..+.-++.+.+++..+.+.|++.+.+.++.+.. +. ...++.+.+..+.+.
T Consensus 226 ~~~~kg~~~~~da~~a~~~g~~~~~vsnhggr~------------------ld------------~~~~~~~~l~~i~~~ 275 (359)
T d1goxa_ 226 PILVKGVITAEDARLAVQHGAAGIIVSNHGARQ------------------LD------------YVPATIMALEEVVKA 275 (359)
T ss_dssp CEEEECCCSHHHHHHHHHTTCSEEEECCGGGTS------------------ST------------TCCCHHHHHHHHHHH
T ss_pred ceeeecccchHHHHHHHHccccceecccccccc------------------cc------------cccchhhhchhhhhc
Confidence 344556889999999999999988876653311 00 123345555555443
Q ss_pred --CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhhhhhhhcccchhcccC
Q 021609 220 --GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLAEVSCGLGEAMVGLNL 297 (310)
Q Consensus 220 --~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (310)
.++||+ ++|||++..|+.+++.+|||+|.+|+.++. ..+..=.+.+ .+.+..+.+++..+|..+|.
T Consensus 276 ~~~~~~ii--adGGIR~G~Di~KALaLGAd~vgigrp~L~-----~la~~g~~gv-----~~~i~~l~~EL~~~M~l~G~ 343 (359)
T d1goxa_ 276 AQGRIPVF--LDGGVRRGTDVFKALALGAAGVFIGRPVVF-----SLAAEGEAGV-----KKVLQMMRDEFELTMALSGC 343 (359)
T ss_dssp TTTSSCEE--EESSCCSHHHHHHHHHHTCSEEEECHHHHH-----HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTC
T ss_pred cCCcccee--eccCcCcHHHHHHHHHcCCCEEEEcHHHHH-----HHHhccHHHH-----HHHHHHHHHHHHHHHHHhCC
Confidence 368998 899999999999999999999999998884 1111112222 23356788899999999998
Q ss_pred ccch
Q 021609 298 SDHK 301 (310)
Q Consensus 298 ~~~~ 301 (310)
++++
T Consensus 344 ~~i~ 347 (359)
T d1goxa_ 344 RSLK 347 (359)
T ss_dssp SBTT
T ss_pred CCHH
Confidence 8775
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.35 E-value=9.3e-07 Score=80.23 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=44.4
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..++.+.+++..++||+ +.|||++++++.++++.| ||.|.+|++++. ||.
T Consensus 279 ~~~~~~~ik~~~~~pVi--~~G~i~~~~~a~~~l~~G~aDlV~~gR~~ia--dPd 329 (340)
T d1djqa1 279 TIPWVKLVKQVSKKPVL--GVGRYTDPEKMIEIVTKGYADIIGCARPSIA--DPF 329 (340)
T ss_dssp THHHHHHHHTTCSSCEE--ECSCCCCHHHHHHHHHTTSCSBEEESHHHHH--CTT
T ss_pred cHHHHHHHHHHcCCeEE--EECCCCCHHHHHHHHHCCCccchhhHHHHHH--Ccc
Confidence 45677888888999998 689999999999999988 999999999998 664
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=5.1e-07 Score=81.81 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=43.1
Q ss_pred HHHHHHHhhcC--CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 210 ~~~i~~i~~~~--~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
...++++++.. ++|++ +.|||.|++|+.+.+.+||+.|+|+|+++. ++|. ..+++.+
T Consensus 276 l~~v~~v~~~~~~~ipII--G~GGI~s~~Da~e~i~aGAsaVQv~Tal~~-~Gp~-ii~~I~~ 334 (336)
T d1f76a_ 276 TEIIRRLSLELNGRLPII--GVGGIDSVIAAREKIAAGASLVQIYSGFIF-KGPP-LIKEIVT 334 (336)
T ss_dssp HHHHHHHHHHHTTSSCEE--EESSCCSHHHHHHHHHHTCSEEEESHHHHH-HCHH-HHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEE--EECCCCCHHHHHHHHHcCCcHHHHHHHHHh-cChH-HHHHHHh
Confidence 34455555543 69998 789999999999999999999999999753 3665 3344443
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.30 E-value=2.6e-06 Score=79.20 Aligned_cols=130 Identities=16% Similarity=0.189 Sum_probs=84.3
Q ss_pred HHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc
Q 021609 130 ENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP 209 (310)
Q Consensus 130 ~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~ 209 (310)
.+.++....+..++..+.+.+++..+.+.|++.+.+.++++... .. ...+
T Consensus 238 i~~i~~~~~~~~i~kgi~~~~da~~~~~~G~~~i~vsnhggr~~------------------d~------------~~~~ 287 (414)
T d1kbia1 238 IEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQL------------------DF------------SRAP 287 (414)
T ss_dssp HHHHHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTSS------------------TT------------CCCH
T ss_pred HHHHhccCCceEEeeccchhHHHHHHHhcCCcceeecccccccc------------------cc------------cccc
Confidence 34443332334456678899999999999999988877654210 00 0111
Q ss_pred HHHHHHHh---h----cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCChhhhh
Q 021609 210 YDLVMQTK---Q----LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSDPEVLA 282 (310)
Q Consensus 210 ~~~i~~i~---~----~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~~~~~~ 282 (310)
...+.++. + ..++||+ ++|||++.-|+.+++.+|||+|.+|+.++. ..+..=.+.+ .+.+.
T Consensus 288 ~~~l~~i~~~~~~~~v~~~~~vi--adGGIR~G~DVaKALALGAdaVgigrp~L~-----~la~~G~egv-----~~~l~ 355 (414)
T d1kbia1 288 IEVLAETMPILEQRNLKDKLEVF--VDGGVRRGTDVLKALCLGAKGVGLGRPFLY-----ANSCYGRNGV-----EKAIE 355 (414)
T ss_dssp HHHHHHHHHHHHTTTCBTTBEEE--EESSCCSHHHHHHHHHHTCSEEEECHHHHH-----HHHHHHHHHH-----HHHHH
T ss_pred ccchhhhhhhhhhhccCCceeEE--ecCCcCcHHHHHHHHHcCCCEEEEcHHHHH-----HHHhccHHHH-----HHHHH
Confidence 11122221 1 1368998 899999999999999999999999999885 1111112222 23345
Q ss_pred hhhhhcccchhcccCccch
Q 021609 283 EVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~ 301 (310)
.+.+++...|..+|.++++
T Consensus 356 ~l~~EL~~~M~l~G~~si~ 374 (414)
T d1kbia1 356 ILRDEIEMSMRLLGVTSIA 374 (414)
T ss_dssp HHHHHHHHHHHHHTCCBGG
T ss_pred HHHHHHHHHHHHhCCCCHH
Confidence 6778888888888887664
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=98.09 E-value=9.1e-05 Score=63.91 Aligned_cols=57 Identities=30% Similarity=0.435 Sum_probs=41.3
Q ss_pred HhhcCCCCEEEeCCCCC-CCHHHH----HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 216 TKQLGRLPVVHFAAGGV-ATPADA----AMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 216 i~~~~~iPVi~iA~GGI-~t~~d~----~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+.....+||++. .|+= .+.+++ ..+++.||.|+++||.+++++||..+++.+...++
T Consensus 189 v~~a~~~pv~~~-gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~~p~~~~~al~~ivH 250 (251)
T d1ojxa_ 189 VKVAGKVPVLMS-GGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY 250 (251)
T ss_dssp HHHTTTSCEEEE-CCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHHHHHHHHHC
T ss_pred HHhcCCCceEEe-CCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcCcHHHHHHHHHHHhc
Confidence 334456888753 3332 355554 44567899999999999999999999888877654
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.94 E-value=6.7e-05 Score=62.99 Aligned_cols=42 Identities=21% Similarity=0.451 Sum_probs=31.7
Q ss_pred CCCCCCHH-HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 229 AGGVATPA-DAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 229 ~GGI~t~~-d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
.+||+... +..+.+ .++|.++|||+|++++||...++++.+.
T Consensus 169 tpGI~~~g~~~~d~~-~~ad~iIvGR~I~~a~dP~~aa~~i~~~ 211 (212)
T d1km4a_ 169 SPGVGAQGGDPGETL-RFADAIIVGRSIYLADNPAAAAAGIIES 211 (212)
T ss_dssp ECCBSTTSBCHHHHT-TTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred cCccccCCCCHHHHH-hhCCEEEECchhccCCCHHHHHHHHHHh
Confidence 58885321 232223 4799999999999999999999988765
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.89 E-value=7.8e-05 Score=62.23 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=36.6
Q ss_pred CCCC-CHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 230 GGVA-TPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 230 GGI~-t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
.||+ ...+..+++++|+|.++|||+|++++||...++++.+.++
T Consensus 162 pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~aa~~i~~~ik 206 (206)
T d2czda1 162 PGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206 (206)
T ss_dssp CCCCSSTTHHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHC
T ss_pred CCccccCCCHHHHHHhCCCEEEEChhhccCCCHHHHHHHHHHHhC
Confidence 4553 2357777889999999999999999999999999988764
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=97.86 E-value=3.9e-05 Score=70.11 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=44.1
Q ss_pred HHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 211 ~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
.+.+.+++..++||+ +.|++ +++.+.++++.| ||.|.+|++++. ||. |.+.++++.
T Consensus 286 ~~~~~i~~~~~~pvi--~~G~i-~~~~ae~~l~~g~aDlV~~gR~~ia--dPd-----~~~K~~~G~ 342 (374)
T d1gwja_ 286 GFREQMRQRFKGGLI--YCGNY-DAGRAQARLDDNTADAVAFGRPFIA--NPD-----LPERFRLGA 342 (374)
T ss_dssp THHHHHHHHCCSEEE--EESSC-CHHHHHHHHHTTSCSEEEESHHHHH--CTT-----HHHHHHHTC
T ss_pred HHHHHHHHHcCCCEE--EECCc-CHHHHHHHHHcCCCcEehhhHHHHH--Ccc-----HHHHHHcCC
Confidence 345667787899998 56999 799999999877 999999999998 665 444444443
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=97.75 E-value=0.00014 Score=66.02 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=38.5
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
..+.+.+++..+.||+ + +|+.|++.+.++++.| ||.|.+|++++. ||.
T Consensus 282 ~~~~~~~~~~~~~~vi--~-~G~~t~~~ae~~l~~G~~DlV~~gR~lia--dP~ 330 (363)
T d1vyra_ 282 EAFRQKVRERFHGVII--G-AGAYTAEKAEDLIGKGLIDAVAFGRDYIA--NPD 330 (363)
T ss_dssp HHHHHHHHHHCCSEEE--E-ESSCCHHHHHHHHHTTSCSEEEESHHHHH--CTT
T ss_pred HHHHHHHHHhcCceEE--e-cCCCCHHHHHHHHHCCCcceehhhHHHHH--Ccc
Confidence 4456667777788887 3 4455899999999998 899999999998 665
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=97.55 E-value=0.0011 Score=55.40 Aligned_cols=126 Identities=17% Similarity=0.256 Sum_probs=88.2
Q ss_pred HHHHHHHHhhcCcceeeccccCc-HHHHHHHHHcCCCEEEeCC-CCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGH-FVEAQILEAIGIDYVDESE-VLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIR 157 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~~~-~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~ 157 (310)
.+.++++++.-=+|++....... ...++.+.+.|+..+-.+. .....+.++.++++.+++.++++ +.|.++++++.+
T Consensus 5 ~~~~~~l~~~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~ 84 (212)
T d1vhca_ 5 QQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKS 84 (212)
T ss_dssp HHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCceEeeeecccHHHHHHHHh
Confidence 45666776654567775443322 3456888999999995333 33445666666665667888887 889999999999
Q ss_pred hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHH
Q 021609 158 EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD 237 (310)
Q Consensus 158 ~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d 237 (310)
+|++++..=+ . +.+.++...+ .++|.+ =|+.|+.+
T Consensus 85 aGa~FivSP~--~--------------------------------------~~~v~~~a~~-~~i~~i----PGv~TpsE 119 (212)
T d1vhca_ 85 SGADFVVTPG--L--------------------------------------NPKIVKLCQD-LNFPIT----PGVNNPMA 119 (212)
T ss_dssp HTCSEEECSS--C--------------------------------------CHHHHHHHHH-TTCCEE----CEECSHHH
T ss_pred hCCcEEECCC--C--------------------------------------CHHHHHHHHh-cCCCcc----CCcCCHHH
Confidence 9999986311 1 1223443333 578987 58889999
Q ss_pred HHHHHHcCCCEEEE
Q 021609 238 AAMMMQLGCDGVFV 251 (310)
Q Consensus 238 ~~~~l~~GadgV~V 251 (310)
+..++++|++.+=+
T Consensus 120 i~~A~~~G~~~vK~ 133 (212)
T d1vhca_ 120 IEIALEMGISAVKF 133 (212)
T ss_dssp HHHHHHTTCCEEEE
T ss_pred HHHHHHCCCCEEEE
Confidence 99999999999863
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=97.51 E-value=0.013 Score=50.02 Aligned_cols=177 Identities=16% Similarity=0.082 Sum_probs=104.5
Q ss_pred cccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHH---HhhcCcceeeccccCcHHHHHHHHH
Q 021609 37 GVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEI---KQSVTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 37 g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i---~~~~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
|.+....++..++.+...|.|++ ++++ +|.. +.+.+..+ .+..+++.++...-.....++.+++
T Consensus 19 G~~~~~~~p~~~ei~a~~G~Dfv~iD~E---------Hg~~---~~~~~~~~i~a~~~~g~~~~VRvp~~~~~~i~~~LD 86 (253)
T d1dxea_ 19 GCWSALSNPISTEVLGLAGFDWLVLDGE---------HAPN---DISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLD 86 (253)
T ss_dssp EEEECSCSHHHHHHHTTSCCSEEEEESS---------SSSC---CHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHcCCCCEEEEecc---------cCCC---ChhHHHHHHHHHhccCCCceecCCCCCHHHHHHHHh
Confidence 45567788999999999999998 4553 2221 13343433 3345677777665556678899999
Q ss_pred cCCCEEEeCCCCCchhHHHHHHh-cC----------------------------CCCcEEEecCCHHHHHHHHH----hC
Q 021609 113 IGIDYVDESEVLTPADEENHINK-HN----------------------------FRIPFVCGCRNLGEALRRIR----EG 159 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i~~-~~----------------------------~~i~~~v~~~t~~ea~~~~~----~G 159 (310)
+||++|+.+..-+.++..+.++. ++ -++.+++-+.|.+-...+.+ -|
T Consensus 87 ~Ga~GIivP~v~s~eea~~~v~~~~ypP~G~Rg~~~~~~~~~~~~~~~~~~~~n~~~~vi~~IEt~~av~nleeI~av~g 166 (253)
T d1dxea_ 87 IGFYNFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEG 166 (253)
T ss_dssp TTCCEEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHHHHHTSTT
T ss_pred cCccEEEecccCCHHHHHHHHHhheeCCCCCcCcCcceeccccccccccccccccceEEEeecccHHHHHHHHHHhccCC
Confidence 99999987776666666666553 11 12445555666543333322 37
Q ss_pred CCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCc--HHHHHHH---hhcCCCCEEEeCCCCCCC
Q 021609 160 AAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAP--YDLVMQT---KQLGRLPVVHFAAGGVAT 234 (310)
Q Consensus 160 ad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~--~~~i~~i---~~~~~iPVi~iA~GGI~t 234 (310)
.|.+.+.+. ++.. ++ .... +...| .+.++++ ++..++|+-.+ ..+
T Consensus 167 iD~i~iGp~----DLs~------sl----G~~g------------~~~~p~v~~ai~~v~~~~~~~gk~~g~~----~~~ 216 (253)
T d1dxea_ 167 VDGIFVGPS----DLAA------AL----GHLG------------NASHPDVQKAIQHIFNRASAHGKPSGIL----APV 216 (253)
T ss_dssp CCEEEECHH----HHHH------HT----TCTT------------CTTSHHHHHHHHHHHHHHHHTTCCEEEE----CCS
T ss_pred CceEEEecC----cHHh------hc----cCCC------------CCCChhHHHHHHHHHHHHHHcCCCeEEe----cCC
Confidence 787766431 1110 00 0000 00111 2223332 22346777422 247
Q ss_pred HHHHHHHHHcCCCEEEEcccc
Q 021609 235 PADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 235 ~~d~~~~l~~GadgV~VGsai 255 (310)
++++.++++.|++-+.+|+-.
T Consensus 217 ~~~~~~~~~~G~~~i~~g~D~ 237 (253)
T d1dxea_ 217 EADARRYLEWGATFVAVGSDL 237 (253)
T ss_dssp HHHHHHHHHTTCCEEEEEEHH
T ss_pred HHHHHHHHHcCCCEEEehHHH
Confidence 999999999999999999743
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=0.00062 Score=57.58 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=31.5
Q ss_pred HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 238 AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
..++++.|+|.++|||+|++++||...++++.+.++
T Consensus 196 p~~Ai~~GaD~iIVGR~It~a~dP~~aa~~i~~~ik 231 (231)
T d1eixa_ 196 PEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 231 (231)
T ss_dssp HHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhC
Confidence 445578999999999999999999999999987663
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.47 E-value=0.0004 Score=56.17 Aligned_cols=94 Identities=16% Similarity=0.121 Sum_probs=67.0
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+..+.+++..+...+.+++.+.+++..+.+.|+|+|-+.+.. ++++
T Consensus 66 i~~~i~~~k~~~~~~~I~VEv~s~~q~~~a~~~~~diImLDN~s--------------------------p~~~------ 113 (169)
T d1qpoa1 66 VVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNFA--------------------------VWQT------ 113 (169)
T ss_dssp HHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEEETCC--------------------------HHHH------
T ss_pred hhhhhhhhhhhcCCCceEEEeccHHHhhhhhhcCCcEEEecCcC--------------------------hHhH------
Confidence 34555666666677889999999999999999999999876531 1111
Q ss_pred cCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 206 IAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 206 ~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+.++.++.. .++.+- ++||| +++++.++..+|+|.+.+|+..+.+
T Consensus 114 ----k~~v~~~~~~~~~i~lE--aSGgI-~~~ni~~ya~~GvD~IS~galt~sa 160 (169)
T d1qpoa1 114 ----QTAVQRRDSRAPTVMLE--SSGGL-SLQTAATYAETGVDYLAVGALTHSV 160 (169)
T ss_dssp ----HHHHHHHHHHCTTCEEE--EESSC-CTTTHHHHHHTTCSEEECGGGTSSB
T ss_pred ----HHHHHHhhccCCeeEEE--EeCCC-CHHHHHHHHHcCCCEEECCccccCC
Confidence 1123333322 234444 79999 7999999999999999999766643
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.34 E-value=0.001 Score=53.52 Aligned_cols=91 Identities=19% Similarity=0.201 Sum_probs=65.2
Q ss_pred chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhc
Q 021609 126 PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKK 205 (310)
Q Consensus 126 ~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~ 205 (310)
..+..+.+++..+...+-+.+.+.+++..+.+.|+|+|.+.+.. ++++
T Consensus 66 ~~~~~~~~~~~~~~~~IeVEv~~~~~~~~a~~~g~diImLDN~~--------------------------pe~~------ 113 (167)
T d1qapa1 66 VRQAVEKAFWLHPDVPVEVEVENLDELDDALKAGADIIMLDNFN--------------------------TDQM------ 113 (167)
T ss_dssp HHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEESSCC--------------------------HHHH------
T ss_pred hhhhhHHHhhcCCCceEEEecCcHHHHHHHHhcCCcEEEecCCC--------------------------HHHH------
Confidence 34445555555677888899999999999999999999876531 1111
Q ss_pred cCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 206 ~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.+.++.+. .++.+- ++||| +++++.+....|+|.+.+|+..+.
T Consensus 114 ----~~av~~i~--~~~~lE--aSGgI-~~~ni~~ya~~GVD~IS~galt~~ 156 (167)
T d1qapa1 114 ----REAVKRVN--GQARLE--VSGNV-TAETLREFAETGVDFISVGALTKH 156 (167)
T ss_dssp ----HHHHHTTC--TTCCEE--ECCCS-CHHHHHHHHHTTCSEEECSHHHHE
T ss_pred ----HHHHHhcC--CceEEE--EeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 11222222 245665 79999 799999999999999999876554
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=97.34 E-value=0.00075 Score=56.94 Aligned_cols=32 Identities=34% Similarity=0.531 Sum_probs=26.8
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
++.|- ++|||+|.+++.+++++|++-+...++
T Consensus 175 ~~~iK--asGGIrt~~~a~~~i~~Ga~RiGtSs~ 206 (225)
T d1mzha_ 175 RIKVK--ASGGIRDLETAISMIEAGADRIGTSSG 206 (225)
T ss_dssp SSEEE--EESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred CceEE--CcCCCCCHHHHHHHHHhchhheecCcH
Confidence 57776 789999999999999999997665443
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.0017 Score=54.21 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=75.4
Q ss_pred HHHHHHHHHcCCCEEEeCC-CCCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHH
Q 021609 104 FVEAQILEAIGIDYVDESE-VLTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi~~~-~~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~ 181 (310)
...++.+.+.|+..+-++. .....+.++.++++.+++.++++ +.|.++++++.++|++++..=+.
T Consensus 30 ~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~------------- 96 (213)
T d1wbha1 30 VPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGL------------- 96 (213)
T ss_dssp HHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSC-------------
T ss_pred HHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCCC-------------
Confidence 3557889999999995443 23345666666665577888886 89999999999999999864211
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+.++++...+ .++|++ =|+.|+.++..++++|++.+=+
T Consensus 97 ---------------------------~~~v~~~a~~-~~i~~i----PGv~TpsEi~~A~~~G~~~vKl 134 (213)
T d1wbha1 97 ---------------------------TEPLLKAATE-GTIPLI----PGISTVSELMLGMDYGLKEFKF 134 (213)
T ss_dssp ---------------------------CHHHHHHHHH-SSSCEE----EEESSHHHHHHHHHTTCCEEEE
T ss_pred ---------------------------CHHHHHHHHh-cCCCcc----CCcCCHHHHHHHHHCCCCEEEe
Confidence 1233443333 578887 3778999999999999999964
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=97.33 E-value=0.00073 Score=56.49 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=26.3
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsa 254 (310)
++.|- ++|||+|.+++.+++++|++-+--.++
T Consensus 175 ~~~iK--asGGIrt~~~a~~~l~aGa~riGtSs~ 206 (211)
T d1ub3a_ 175 RAQVK--AAGGIRDRETALRMLKAGASRLGTSSG 206 (211)
T ss_dssp SSEEE--EESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred CceEE--CcCCCCCHHHHHHHHHHhhhHhccCcH
Confidence 46676 789999999999999999997665443
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=97.32 E-value=0.00014 Score=61.88 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=41.8
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
.+....+++. .++|++ .++||+|++++.++. .+||||+|||+|.+ ++.... ++.++++
T Consensus 169 ~~~~~~v~~~~~~~Pl~--VGFGIst~e~a~~v~-~~ADgVVVGSAiv~--~ie~~~-~~~~aik 227 (229)
T d1viza_ 169 IEAVKKTKAVLETSTLF--YGGGIKDAETAKQYA-EHADVIVVGNAVYE--DFDRAL-KTVAAVK 227 (229)
T ss_dssp HHHHHHHHHTCSSSEEE--EESSCCSHHHHHHHH-TTCSEEEECTHHHH--CHHHHH-THHHHHH
T ss_pred chhHHHHHhhccCcceE--EEcccCCHHHHHHHH-cCCCEEEECHHHHh--hHHHHH-HHHHHhh
Confidence 3444555443 468997 589999999999876 68999999999987 554333 3555543
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=97.25 E-value=0.008 Score=49.32 Aligned_cols=183 Identities=17% Similarity=0.187 Sum_probs=102.4
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC---cceeeccccCcHHHHHHHHHcCCCE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT---IPVMAKARIGHFVEAQILEAIGIDY 117 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~---iPv~vk~~~~~~~~a~~~~~aGad~ 117 (310)
+++++.|+.+.++||+.+ +.+- ..|-+.-+++.++++.+.+. .+|.+-......+..+.+...+.|.
T Consensus 8 it~~ed~~~~~~~gad~iGfif~---------~~SpR~vs~~~a~~i~~~~~~~~~~V~Vf~~~~~~~i~~~~~~~~~d~ 78 (200)
T d1v5xa_ 8 ITRLEDALLAEALGAFALGFVLA---------PGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQV 78 (200)
T ss_dssp CCCHHHHHHHHHHTCSEEEEECC---------TTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSE
T ss_pred CCcHHHHHHHHhCCCCEEEEEcC---------CCCCCCcCHHHHHHHHHhhcCceeeeeeeeechhhhhhhhhccccccc
Confidence 688999999999999987 2221 11223345788888876553 3333332222233346677899999
Q ss_pred EEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCC-CCcchHHHHHHHHhhccceEeecccCh
Q 021609 118 VDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEA-GTGNIIEAVRHVRSVMGDIRVLRNMDD 196 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~-~~~~~~~~~~~~r~~~~~~~~l~~~~~ 196 (310)
|-.+...++. ..+.++. .+.+.......+.... ...+..++++.+.... +++
T Consensus 79 vQlHg~e~~~-~~~~l~~-~~~iik~~~~~~~~~~-~~~~~~~~~~L~D~~~~g~g------------------------ 131 (200)
T d1v5xa_ 79 AQLHGEEPPE-WAEAVGR-FYPVIKAFPLEGPARP-EWADYPAQALLLDGKRPGSG------------------------ 131 (200)
T ss_dssp EEECSCCCHH-HHHHHTT-TSCEEEEEECSSSCCG-GGGGSSCSEEEEECSSTTSC------------------------
T ss_pred ccccccCCHH-HHHHHhh-ccccceeeccCchhhH-HHhhcchhheeecccccCcc------------------------
Confidence 9545444433 3334432 2222222222221111 1123345555443321 111
Q ss_pred hHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC---CHHHHHHHHHHHHh
Q 021609 197 DEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG---DPVKRAQAIVRAVT 273 (310)
Q Consensus 197 d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~---dp~~~a~~l~~~i~ 273 (310)
.+.++.+...+.. ...|++ .+||| +++++.+++..++.||=|.|.+=.++ |+. ..++|++.++
T Consensus 132 ---------~~~~~~~~~~~~~-~~~~~~--LAGGl-~~~Nv~~~~~~~p~gvDvsSGvE~~~G~KD~~-ki~~f~~~~~ 197 (200)
T d1v5xa_ 132 ---------EAYPRAWAKPLLA-TGRRVI--LAGGI-APENLEEVLALRPYALDLASGVEEAPGVKSAE-KLRALFARLA 197 (200)
T ss_dssp ---------CCCCGGGGHHHHH-TTSCEE--ECSSC-CSTTHHHHHHHCCSEEEESGGGEEETTEECHH-HHHHHHHHHH
T ss_pred ---------cccchHHHhhhhh-ccCceE--ecCCC-CHHHHHHHHhcCCCEEEEcCceECCCCccCHH-HHHHHHHHHH
Confidence 1222333222222 346998 58999 69999999999999999999996543 664 4455777665
Q ss_pred c
Q 021609 274 H 274 (310)
Q Consensus 274 ~ 274 (310)
.
T Consensus 198 ~ 198 (200)
T d1v5xa_ 198 S 198 (200)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=97.23 E-value=0.00095 Score=57.16 Aligned_cols=28 Identities=36% Similarity=0.495 Sum_probs=24.4
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
++.|- ++|||+|.+++.+++.+|++-+-
T Consensus 208 ~~giK--asGGIrt~~~a~~~i~aGa~riG 235 (251)
T d1o0ya_ 208 EMGVK--ASGGIRTFEDAVKMIMYGADRIG 235 (251)
T ss_dssp TSEEE--EESSCCSHHHHHHHHHTTCSEEE
T ss_pred CceEe--ccCCcCCHHHHHHHHHHhhHHhC
Confidence 46676 78999999999999999999764
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=97.22 E-value=0.00046 Score=58.73 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.5
Q ss_pred HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 238 AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
..++++.|+|.++|||+|++++||..+++++++.++
T Consensus 200 p~~a~~~GaD~iIVGR~I~~s~dP~~aa~~i~~~ie 235 (237)
T d1dbta_ 200 PAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWE 235 (237)
T ss_dssp HHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHHc
Confidence 456688999999999999999999999999988875
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.20 E-value=0.00049 Score=55.64 Aligned_cols=94 Identities=19% Similarity=0.272 Sum_probs=64.6
Q ss_pred chhHHHHHHhc-CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhh
Q 021609 126 PADEENHINKH-NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAK 204 (310)
Q Consensus 126 ~~~~~~~i~~~-~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~ 204 (310)
..+..+.+++. .+...+.+.+.|.+++..+.+.|+|.|-+.+.. ++++
T Consensus 64 ~~~~~~~~~~~~~~~~~I~VEv~~~~e~~~a~~~g~d~i~LDn~~--------------------------pe~~----- 112 (170)
T d1o4ua1 64 AERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNLS--------------------------PEEV----- 112 (170)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHTTCSEEEEESCC--------------------------HHHH-----
T ss_pred HHHHHHHHHhhCCCCceEEEEeCcHHHHHHHHhcCccEEEEcCcC--------------------------hhhH-----
Confidence 34455555543 345778899999999999999999998876431 1111
Q ss_pred ccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 021609 205 KIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 205 ~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a 258 (310)
.+..+.++.. .++.+- ++||| +++++.++.++|+|.+.+|+....+
T Consensus 113 -----k~~~~~lk~~~~~i~lE--aSGGI-~~~ni~~~a~~GVD~Is~g~lt~~a 159 (170)
T d1o4ua1 113 -----KDISRRIKDINPNVIVE--VSGGI-TEENVSLYDFETVDVISSSRLTLQE 159 (170)
T ss_dssp -----HHHHHHHHHHCTTSEEE--EEECC-CTTTGGGGCCTTCCEEEEGGGTSSC
T ss_pred -----hHHHHHHHhhCCcEEEE--EECCC-CHHHHHHHHHcCCCEEEcCccccCC
Confidence 1122223322 244454 79999 7999999889999999999776654
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=97.19 E-value=0.0019 Score=54.00 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=80.2
Q ss_pred CcceeeccccCc-HHHHHHHHHcCCCEEEeCCC-CCchhHHHHHHhcCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCC
Q 021609 92 TIPVMAKARIGH-FVEAQILEAIGIDYVDESEV-LTPADEENHINKHNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGE 168 (310)
Q Consensus 92 ~iPv~vk~~~~~-~~~a~~~~~aGad~Vi~~~~-~~~~~~~~~i~~~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~ 168 (310)
=+||+....... ...++.+.+.|...+-.+.. ....+.++.++++.+++.++++ +.|.++++++.++|++|+..-+.
T Consensus 19 iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~~ 98 (216)
T d1mxsa_ 19 ILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPGI 98 (216)
T ss_dssp EEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCCC
Confidence 366665443322 35678899999999953332 2234556666665568888886 89999999999999999863211
Q ss_pred CCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 169 AGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 169 ~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
+.++++...+ .++|.+ =|+.|+.++..++++|++.
T Consensus 99 ----------------------------------------~~~v~~~a~~-~~i~~i----PGv~TpsEi~~A~~~G~~~ 133 (216)
T d1mxsa_ 99 ----------------------------------------TEDILEAGVD-SEIPLL----PGISTPSEIMMGYALGYRR 133 (216)
T ss_dssp ----------------------------------------CHHHHHHHHH-CSSCEE----CEECSHHHHHHHHTTTCCE
T ss_pred ----------------------------------------cHHHHHHHHh-cCCCcc----CCcCCHHHHHHHHHCCCCE
Confidence 1223333333 578887 4778999999999999999
Q ss_pred EEE
Q 021609 249 VFV 251 (310)
Q Consensus 249 V~V 251 (310)
|=+
T Consensus 134 vKl 136 (216)
T d1mxsa_ 134 FKL 136 (216)
T ss_dssp EEE
T ss_pred EEe
Confidence 963
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.0049 Score=50.63 Aligned_cols=181 Identities=14% Similarity=0.146 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHH-HHHHHHcCCCEE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVE-AQILEAIGIDYV 118 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~-a~~~~~aGad~V 118 (310)
+++++.++.+.+.|||.+ +.+.+ .|-+.-+++..+++.+...+. .+..+.+ ..+. .+.+...+.|.+
T Consensus 8 It~~~d~~~~~~~gaD~iGfif~~---------~SpR~Vs~~~a~~i~~~~~~~-~V~Vfv~~~~~~i~~~~~~~~~d~i 77 (198)
T d1piia1 8 LTRGQDAKAAYDAGAIYGGLIFVA---------TSPRCVNVEQAQEVMAAAPLQ-YVGVFRNHDIADVVDKAKVLSLAAV 77 (198)
T ss_dssp CCSHHHHHHHHHHTCSEEEEECCT---------TCTTBCCHHHHHHHHHHCCCE-EEEEESSCCHHHHHHHHHHHTCSEE
T ss_pred CCcHHHHHHHHhCCCCEEEEEccC---------CCCCCcCHHHHHHhhhhcccc-cceeeeccchhhHHHhhhcccccce
Confidence 688999999999999987 22211 122334578888887766522 2222222 2233 466777999998
Q ss_pred EeCCCCCchhHHHHHHhcCCC-CcEEE--ecCCHHHHHHHHHhCCCEEEEc-CCCCCcchHHHHHHHHhhccceEeeccc
Q 021609 119 DESEVLTPADEENHINKHNFR-IPFVC--GCRNLGEALRRIREGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~~-i~~~v--~~~t~~ea~~~~~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
-.+...++.. .+.++...+. +.... +..+..... ....+|.+.+. ..+++|.
T Consensus 78 QlHG~e~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~lld~~~gGtG~--------------------- 133 (198)
T d1piia1 78 QLHGNEEQLY-IDTLREALPAHVAIWKALSVGETLPAR--EFQHVDKYVLDNGQGGSGQ--------------------- 133 (198)
T ss_dssp EECSCCCHHH-HHHHHHHSCTTSEEEEEEECSSSCCCC--CCTTCCEEEEESCSCCSSC---------------------
T ss_pred eecCCccHHH-HHHHhccccccccceeccchhhhhhHH--HhhhhcccccCCcccccce---------------------
Confidence 5444444433 3444443222 22221 121110000 00123333322 2222321
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCC---CHHHHHHHHHHH
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG---DPVKRAQAIVRA 271 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~---dp~~~a~~l~~~ 271 (310)
.-+|.++ ......|++ .+||| +++++.++++.++.||=|.|.+=.++ |+. ..++|++.
T Consensus 134 ------------~fdw~~~---~~~~~~~~~--LAGGl-~~~Nv~~a~~~~p~gvDvsSGvE~~pG~KD~~-ki~~f~~~ 194 (198)
T d1piia1 134 ------------RFDWSLL---NGQSLGNVL--LAGGL-GADNCVEAAQTGCAGLDFNSAVESQPGIKDAR-LLASVFQT 194 (198)
T ss_dssp ------------CCCGGGG---TTSCCTTEE--EESSC-CTTTHHHHHTTCCSEEEECGGGEEETTEECHH-HHHHHHHH
T ss_pred ------------eeehhhh---cccccceeE--EecCC-CHHHHHHHHhcCCCEEEeCCcccCCCCCcCHH-HHHHHHHH
Confidence 1234443 233456887 47999 79999999999999999999997654 664 45558887
Q ss_pred Hhcc
Q 021609 272 VTHY 275 (310)
Q Consensus 272 i~~~ 275 (310)
+++|
T Consensus 195 vr~~ 198 (198)
T d1piia1 195 LRAY 198 (198)
T ss_dssp HHCC
T ss_pred HhcC
Confidence 7654
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=96.99 E-value=0.012 Score=51.39 Aligned_cols=92 Identities=12% Similarity=0.012 Sum_probs=58.4
Q ss_pred CcccccCCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhh--cCcceeeccccCcHHHHHHHHH
Q 021609 36 GGVIMDVVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQS--VTIPVMAKARIGHFVEAQILEA 112 (310)
Q Consensus 36 ~g~i~~~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~--~~iPv~vk~~~~~~~~a~~~~~ 112 (310)
-|.+..+.++..++.+...|+|++ +|++..+.+... ....+..++.. ...+.++...-.....++.+++
T Consensus 43 ~G~~~~~~s~~~~e~~a~~g~D~v~iD~EHg~~~~~~--------~~~~i~a~~~~~~~~~~~iVRvp~~~~~~I~~~LD 114 (299)
T d1izca_ 43 MGVAHGIPSTFVTKVLAATKPDFVWIDVEHGMFNRLE--------LHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALD 114 (299)
T ss_dssp EEEEECSCCHHHHHHHHHTCCSEEEEETTTSCCCHHH--------HHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHH
T ss_pred eeeeccCCCHHHHHHHHcCCCCEEEEcCCCCCCCHHH--------HHHHHHHHHHhCCCCCCeEEeCCCCChHHHHHHHH
Confidence 366778889999999999999998 566421111100 01223333321 2345555544344566888999
Q ss_pred cCCCEEEeCCCCCchhHHHHHHh
Q 021609 113 IGIDYVDESEVLTPADEENHINK 135 (310)
Q Consensus 113 aGad~Vi~~~~~~~~~~~~~i~~ 135 (310)
+||++|+.+...+..+..+.++.
T Consensus 115 ~Ga~GIivP~V~s~eea~~~v~~ 137 (299)
T d1izca_ 115 AGAAGIVIPHVETVEEVREFVKE 137 (299)
T ss_dssp HTCSEEEETTCCCHHHHHHHHHH
T ss_pred hCcCeeeccccccHHHHHHHHHh
Confidence 99999998877677766666554
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.97 E-value=0.003 Score=53.42 Aligned_cols=31 Identities=29% Similarity=0.396 Sum_probs=26.0
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
++.|- ++|||+|.+|+.+++++|++-+-..+
T Consensus 192 ~vgIK--asGGIrt~~~a~~~i~aGa~rIGtSs 222 (234)
T d1n7ka_ 192 GMGVK--ASGGIRSGIDAVLAVGAGADIIGTSS 222 (234)
T ss_dssp TCEEE--EESSCCSHHHHHHHHHTTCSEEEETT
T ss_pred CCcEE--eeCCcCCHHHHHHHHHccCceeecch
Confidence 56777 79999999999999999999765443
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.043 Score=44.83 Aligned_cols=183 Identities=16% Similarity=0.161 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcC-cceeeccccC-cH-HHHHHHHHcCCCE
Q 021609 42 VVTPEQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVT-IPVMAKARIG-HF-VEAQILEAIGIDY 117 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~-iPv~vk~~~~-~~-~~a~~~~~aGad~ 117 (310)
+++++.|+.+.++|||.+ +.+. ..|.+.-+++..+++.+... -...+..+.+ .. +..+.+...+.|.
T Consensus 9 it~~~da~~~~~~gad~iGfI~~---------~~SpR~Vs~~~a~~i~~~~~~~~~~V~V~v~~~~~~i~~~~~~~~~~~ 79 (205)
T d1nsja_ 9 ITNLEDALFSVESGADAVGFVFY---------PKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNA 79 (205)
T ss_dssp CCSHHHHHHHHHHTCSEEEEECC---------TTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSE
T ss_pred CCcHHHHHHHHhCCCCEEeEecc---------CCCCCccCHHHHHHHHhhhcccceeeccccccHHHHHHhhhhhccccc
Confidence 688999999999999987 3321 12223345788888866543 2222222222 22 3345667789999
Q ss_pred EEeCCCCCchhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEc--CC--CCCcchHHHHHHHHhhccceEeecc
Q 021609 118 VDESEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTK--GE--AGTGNIIEAVRHVRSVMGDIRVLRN 193 (310)
Q Consensus 118 Vi~~~~~~~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~--g~--~~~~~~~~~~~~~r~~~~~~~~l~~ 193 (310)
|-.+... +.+....+.. ...+.......+..+...+.+.-.+++-.. .. +++|
T Consensus 80 vQlhg~e-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~GGtG--------------------- 136 (205)
T d1nsja_ 80 VQLHGEE-PIELCRKIAE-RILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGSG--------------------- 136 (205)
T ss_dssp EEECSCC-CHHHHHHHHT-TSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSCC---------------------
T ss_pred hhccchh-hHHHHhhccc-ceeeeeeccccchHHHHHHhhcccceeeeccccccCCCCC---------------------
Confidence 9544433 3344444432 223444445556666655555444433222 11 1222
Q ss_pred cChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHH-cCCCEEEEccccccCC---CHHHHHHHHH
Q 021609 194 MDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSG---DPVKRAQAIV 269 (310)
Q Consensus 194 ~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~-~GadgV~VGsai~~a~---dp~~~a~~l~ 269 (310)
..-+|.++..+... ..|++ .+||| +++++.++++ .+++||=|.|.+=.++ |+. ..++|+
T Consensus 137 ------------~~~dw~~~~~~~~~-~~~~~--LAGGl-~~~Nv~~ai~~~~p~gvDvsSgvE~~~G~KD~~-ki~~f~ 199 (205)
T d1nsja_ 137 ------------KTFDWSLILPYRDR-FRYLV--LSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPGKKDHD-SIKMFI 199 (205)
T ss_dssp ------------SCCCGGGTGGGGGG-SSCEE--EESSC-CTTTHHHHHHHHCCSEEEESGGGEEETTEECHH-HHHHHH
T ss_pred ------------cccchhhcccchhc-cccee--eecCC-CHHHHHHHHHHhCCCEEEEcCcccCCCCccCHH-HHHHHH
Confidence 12234444444432 34887 47999 7999999995 8999999999996543 654 445577
Q ss_pred HHHh
Q 021609 270 RAVT 273 (310)
Q Consensus 270 ~~i~ 273 (310)
+.++
T Consensus 200 ~~vr 203 (205)
T d1nsja_ 200 KNAK 203 (205)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6664
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=96.90 E-value=0.0022 Score=62.64 Aligned_cols=119 Identities=18% Similarity=0.245 Sum_probs=74.7
Q ss_pred cCCCEEE---eCCCCCchhHHHHHHh---cCCCCcEEEec---CCHHHHHH-HHHhCCCEEEEcCC-CCCcchHHHHHHH
Q 021609 113 IGIDYVD---ESEVLTPADEENHINK---HNFRIPFVCGC---RNLGEALR-RIREGAAMIRTKGE-AGTGNIIEAVRHV 181 (310)
Q Consensus 113 aGad~Vi---~~~~~~~~~~~~~i~~---~~~~i~~~v~~---~t~~ea~~-~~~~Gad~V~v~g~-~~~~~~~~~~~~~ 181 (310)
-|.|.+. .++..+++++.+++.. ...+.++.+-. +..++... ..++|+|+|.+.|. ++||.-
T Consensus 539 ~G~~~iSP~~h~di~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAa------- 611 (771)
T d1ea0a2 539 PGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGAS------- 611 (771)
T ss_dssp TTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSE-------
T ss_pred CCCCccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccc-------
Confidence 7888885 2334566776666544 34466666642 33444333 45889999999987 446530
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHH-HHH----HHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcc
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYD-LVM----QTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~-~i~----~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGs 253 (310)
+.+. .+..+-|++ .+. .+.+. -++.++ ++||+.|+.|+.+++.+|||+|.+|+
T Consensus 612 ----------p~~~-------~d~~GlP~~~~l~~~~~~L~~~glr~~V~l~--a~Ggl~t~~Dv~ka~aLGAD~v~~gt 672 (771)
T d1ea0a2 612 ----------PQTS-------IKFAGLPWEMGLSEVHQVLTLNRLRHRVRLR--TDGGLKTGRDIVIAAMLGAEEFGIGT 672 (771)
T ss_dssp ----------ETTH-------HHHSCCCHHHHHHHHHHHHHTTTCTTTSEEE--EESSCCSHHHHHHHHHTTCSEEECCH
T ss_pred ----------cHHH-------hhcCCcCHHHHHHHHHHHHHHcCCCCceEEE--EeCCCCCHHHHHHHHHhCCCchHHhH
Confidence 0000 012344432 122 22222 257777 89999999999999999999999999
Q ss_pred cccc
Q 021609 254 GVFK 257 (310)
Q Consensus 254 ai~~ 257 (310)
++|-
T Consensus 673 ~~m~ 676 (771)
T d1ea0a2 673 ASLI 676 (771)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.88 E-value=0.00026 Score=60.01 Aligned_cols=44 Identities=25% Similarity=0.511 Sum_probs=34.9
Q ss_pred HHHHHHhh-cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 211 DLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 211 ~~i~~i~~-~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
+.+..+++ ..++|++ .++||+|++++.++.+ +||||+|||+|.+
T Consensus 176 ~~~~~~~k~~~~~Pv~--VGFGI~s~e~a~~~~~-~ADgvIVGSaive 220 (231)
T d2f6ua1 176 ELVAEVKKVLDKARLF--YGGGIDSREKAREMLR-YADTIIVGNVIYE 220 (231)
T ss_dssp HHHHHHHHHCSSSEEE--EESCCCSHHHHHHHHH-HSSEEEECHHHHH
T ss_pred hHHHHHHHhcCCCCEE--EEeCcCCHHHHHHHHh-cCCEEEEChHHhc
Confidence 33444443 4579998 5899999999999776 7999999999975
|
| >d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Thermotoga maritima [TaxId: 2336]
Probab=96.86 E-value=0.0018 Score=53.55 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=25.8
Q ss_pred HHHcCCCEEEEccccccCCCHHHHHHHHH
Q 021609 241 MMQLGCDGVFVGSGVFKSGDPVKRAQAIV 269 (310)
Q Consensus 241 ~l~~GadgV~VGsai~~a~dp~~~a~~l~ 269 (310)
++..|||.++|||+|++++||...+++++
T Consensus 169 ai~~GAd~iVVGR~It~s~dp~~~~~~i~ 197 (198)
T d1vqta1 169 EMKGIANFAVLGREIYLSENPREKIKRIK 197 (198)
T ss_dssp HHTTTCSEEEESHHHHTSSCHHHHHHHHT
T ss_pred HHHcCCCEEEECCcccCCCCHHHHHHHHh
Confidence 46789999999999999999999988764
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=96.81 E-value=0.0054 Score=50.64 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=71.3
Q ss_pred HHHHHHHHcCCCEEEeCCC-CCchhHHHHHHh-cCCCCcEEEe-cCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHH
Q 021609 105 VEAQILEAIGIDYVDESEV-LTPADEENHINK-HNFRIPFVCG-CRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHV 181 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi~~~~-~~~~~~~~~i~~-~~~~i~~~v~-~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~ 181 (310)
..++.+.+.|++.+-.+.. ....+.++.+++ +++++.++++ +.|.++++++.++|++++. .+ ..
T Consensus 25 ~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fiv-sP-~~----------- 91 (202)
T d1wa3a1 25 EKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIV-SP-HL----------- 91 (202)
T ss_dssp HHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEE-CS-SC-----------
T ss_pred HHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEe-CC-CC-----------
Confidence 4567888999999953332 233344444443 4567888775 8999999999999999985 22 11
Q ss_pred HhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEE
Q 021609 182 RSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV 251 (310)
Q Consensus 182 r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~V 251 (310)
+.++++...+ .++|++ =|+.|+.++.+++++|++.+-+
T Consensus 92 ---------------------------~~~v~~~~~~-~~i~~i----PGv~TpsEi~~A~~~G~~~lK~ 129 (202)
T d1wa3a1 92 ---------------------------DEEISQFCKE-KGVFYM----PGVMTPTELVKAMKLGHTILKL 129 (202)
T ss_dssp ---------------------------CHHHHHHHHH-HTCEEE----CEECSHHHHHHHHHTTCCEEEE
T ss_pred ---------------------------cHHHHHHHHh-cCCcee----CCcCcHHHHHHHHHCCCCEEEe
Confidence 1223333333 367886 5888999999999999999975
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.017 Score=50.08 Aligned_cols=179 Identities=13% Similarity=0.151 Sum_probs=99.9
Q ss_pred cccCCCHHHHHHHHHcCCcEEEe----cc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc--cCc-----HHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMA----LE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR--IGH-----FVE 106 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~----L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~--~~~-----~~~ 106 (310)
+..+-|+-.|+.++++|++++.- +. ..-.... .+-..+....+.+++|.+.+++||++..- ++. ...
T Consensus 20 ~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~~~G~pD-~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~v~~~ 98 (289)
T d1muma_ 20 IVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPD-LGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVART 98 (289)
T ss_dssp EEECSSHHHHHHHHHTTCSCEEECHHHHHHTTSCCCS-SSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHH
T ss_pred eecCCCHHHHHHHHHcCCCEEEhhHHHHHHHccCCCC-CCCCChHHHHHHHHHHhcccCCCeeecccccccccchHHHHH
Confidence 34456777889999999998721 10 0000000 00000111235677778889999999632 221 245
Q ss_pred HHHHHHcCCCEEEeCCC--------------CCchhHHHHHHh-----cCCCCcEEEecC-----CHHHHHH----HHHh
Q 021609 107 AQILEAIGIDYVDESEV--------------LTPADEENHINK-----HNFRIPFVCGCR-----NLGEALR----RIRE 158 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~--------------~~~~~~~~~i~~-----~~~~i~~~v~~~-----t~~ea~~----~~~~ 158 (310)
++.+.++||-++.+-|. .+..+....++. ..+++.+++-+. ..+|+.+ ..++
T Consensus 99 v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~~aY~eA 178 (289)
T d1muma_ 99 VKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEA 178 (289)
T ss_dssp HHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccccCHHHHHHHHHHhhhc
Confidence 68889999999952221 123333333322 123444444332 2344333 3467
Q ss_pred CCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEE-eCCCCCCCHHH
Q 021609 159 GAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVH-FAAGGVATPAD 237 (310)
Q Consensus 159 Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~-iA~GGI~t~~d 237 (310)
|+|.+.+.+.. ..+.++.+++..+.|+.+ +..+|-...-+
T Consensus 179 GAD~vf~~~~~---------------------------------------~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s 219 (289)
T d1muma_ 179 GAEMLFPEAIT---------------------------------------ELAMYRQFADAVQVPILANITEFGATPLFT 219 (289)
T ss_dssp TCSEEEETTCC---------------------------------------CHHHHHHHHHHHCSCBEEECCSSSSSCCCC
T ss_pred CCcEEEecCCC---------------------------------------CHHHHHHHHHhcCCCEEEeecCcCCCccch
Confidence 99988775421 133455555545566643 24566532236
Q ss_pred HHHHHHcCCCEEEEcccccc
Q 021609 238 AAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~~ 257 (310)
+.++.++|+.-+..+...++
T Consensus 220 ~~eL~~~Gv~~v~~~~~~~~ 239 (289)
T d1muma_ 220 TDELRSAHVAMALYPLSAFR 239 (289)
T ss_dssp HHHHHHTTCSEEEESSHHHH
T ss_pred HHHHHHhccceEEechHHHH
Confidence 67778999999999988876
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=96.77 E-value=0.0073 Score=53.60 Aligned_cols=124 Identities=23% Similarity=0.312 Sum_probs=80.3
Q ss_pred cCcceeec--cccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-cCCC----CcEEEecCCHHHHHHHHHhCCCEE
Q 021609 91 VTIPVMAK--ARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINK-HNFR----IPFVCGCRNLGEALRRIREGAAMI 163 (310)
Q Consensus 91 ~~iPv~vk--~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~~~~----i~~~v~~~t~~ea~~~~~~Gad~V 163 (310)
.++|++.- +.....+.+..+.++|-=+++. ...++.+..+.+++ +... ..+.+...+.+.+..+.+.|+|++
T Consensus 36 ~~iPIIaa~MdtV~~~~mA~als~~GGlGvi~-r~~~~e~~~~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~agvd~i 114 (330)
T d1vrda1 36 INIPLVSAAMDTVTEAALAKALAREGGIGIIH-KNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAGVDVI 114 (330)
T ss_dssp ESSSEEECCCTTTCSHHHHHHHHTTTCEEEEC-SSSCHHHHHHHHHHHHTCCBCCEEEECSSTTHHHHHHHHHHTTCSEE
T ss_pred cCCCEEeCCCCCcCCHHHHHHHHHCCCeEEee-cccchhhhHHHHHHHhhhccEEEEEEecCHHHHHHHHHHHHCCCCEE
Confidence 57898773 4555678888888888877763 33355555444443 2222 223333456667777788999998
Q ss_pred EEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHH
Q 021609 164 RTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMM 242 (310)
Q Consensus 164 ~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l 242 (310)
.+....+ +.. ...+.++.+++. .++||+ .|.+.|++.+..++
T Consensus 115 vId~A~G--~~~--------------------------------~~~~~ik~ik~~~~~~~vi---aGnV~t~~~a~~l~ 157 (330)
T d1vrda1 115 VIDTAHG--HSR--------------------------------RVIETLEMIKADYPDLPVV---AGNVATPEGTEALI 157 (330)
T ss_dssp EECCSCC--SSH--------------------------------HHHHHHHHHHHHCTTSCEE---EEEECSHHHHHHHH
T ss_pred EEecCCC--Cch--------------------------------hHHHHHHHHHHhCCCCCEE---eechhHHHHHHHHH
Confidence 8754322 100 012344555443 468887 38999999999999
Q ss_pred HcCCCEEEEc
Q 021609 243 QLGCDGVFVG 252 (310)
Q Consensus 243 ~~GadgV~VG 252 (310)
++|||+|.||
T Consensus 158 ~~GaD~v~VG 167 (330)
T d1vrda1 158 KAGADAVKVG 167 (330)
T ss_dssp HTTCSEEEEC
T ss_pred HcCCCEEeec
Confidence 9999999996
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=96.76 E-value=0.003 Score=53.21 Aligned_cols=77 Identities=27% Similarity=0.277 Sum_probs=61.2
Q ss_pred Ccc--cccC-CCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHH
Q 021609 36 GGV--IMDV-VTPEQARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILE 111 (310)
Q Consensus 36 ~g~--i~~~-~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~ 111 (310)
.|+ +.++ .|+..|+++++.|+..++-|- ..-||.+ ..++..++.+++..++||++.-.+|.-.++..+.
T Consensus 124 eGF~VlpY~~~D~v~ak~Le~~Gc~avMPlg-------sPIGSg~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~AM 196 (251)
T d1xm3a_ 124 EGFIVLPYTSDDVVLARKLEELGVHAIMPGA-------SPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAM 196 (251)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHTCSCBEECS-------SSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHH
T ss_pred CCcEEEEecCCCHHHHHHHHHcCChhHHHhh-------hhhhcCCCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHHH
Confidence 554 3344 367899999999999886662 2234443 6789999999999999999999998878899999
Q ss_pred HcCCCEEE
Q 021609 112 AIGIDYVD 119 (310)
Q Consensus 112 ~aGad~Vi 119 (310)
+.|+|+|+
T Consensus 197 ElG~daVL 204 (251)
T d1xm3a_ 197 ELGADGVL 204 (251)
T ss_dssp HTTCSEEE
T ss_pred HccCCEEE
Confidence 99999997
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=96.75 E-value=0.0023 Score=62.85 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=73.9
Q ss_pred cCCCEEE---eCCCCCchhHHHHHHh---cCCCCcEEEec---CCHHH-HHHHHHhCCCEEEEcCC-CCCcc-hHHHHHH
Q 021609 113 IGIDYVD---ESEVLTPADEENHINK---HNFRIPFVCGC---RNLGE-ALRRIREGAAMIRTKGE-AGTGN-IIEAVRH 180 (310)
Q Consensus 113 aGad~Vi---~~~~~~~~~~~~~i~~---~~~~i~~~v~~---~t~~e-a~~~~~~Gad~V~v~g~-~~~~~-~~~~~~~ 180 (310)
-|.|.+. .++..+++++..++.. ...+.++.+-. ..... +.-..++|+|+|.+.|. ++||. +.+.
T Consensus 566 ~G~~liSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~--- 642 (809)
T d1ofda2 566 PGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSS--- 642 (809)
T ss_dssp TTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHH---
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHH---
Confidence 7888885 2334566766655544 33456665542 33333 33345789999999987 44653 1111
Q ss_pred HHhhccceEeecccChhHHHHhhhccCCcHH-HHHH----Hhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYD-LVMQ----TKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 181 ~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~-~i~~----i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.+..+.|++ -+.+ +.+. -++.++ ++||+.|+.|+.+++.+|||+|.+|
T Consensus 643 ----------------------~~~~GlP~~~gl~~a~~~L~~~glR~~V~Li--a~Ggl~t~~Dv~ka~aLGAD~v~~g 698 (809)
T d1ofda2 643 ----------------------IKHAGSPWELGVTEVHRVLMENQLRDRVLLR--ADGGLKTGWDVVMAALMGAEEYGFG 698 (809)
T ss_dssp ----------------------HHHBCCCHHHHHHHHHHHHHHTTCGGGCEEE--EESSCCSHHHHHHHHHTTCSEEECS
T ss_pred ----------------------HhcCCccHHHHHHHHHHHHHHcCCCCceEEE--EeCCCCCHHHHHHHHHhCCCchhHh
Confidence 112344432 1222 2221 247777 8999999999999999999999999
Q ss_pred cccccC
Q 021609 253 SGVFKS 258 (310)
Q Consensus 253 sai~~a 258 (310)
++.|-+
T Consensus 699 t~~l~a 704 (809)
T d1ofda2 699 SIAMIA 704 (809)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=96.72 E-value=0.0069 Score=54.68 Aligned_cols=56 Identities=18% Similarity=0.150 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
..+.+.+++..++||+ +.||+ +++.+.++++.| ||.|.+||+++. ||. |.+.++..
T Consensus 296 ~~~~~~ik~~~~~pv~--~~Gg~-~~~~ae~~l~~G~~DlV~~gR~lia--DPd-----lv~K~~~g 352 (380)
T d1q45a_ 296 AKLMKSLRMAYNGTFM--SSGGF-NKELGMQAVQQGDADLVSYGRLFIA--NPD-----LVSRFKID 352 (380)
T ss_dssp HHHHHHHHHHSCSCEE--EESSC-CHHHHHHHHHTTSCSEEEESHHHHH--CTT-----HHHHHHTT
T ss_pred HHHHHHHhhccCCcEE--eCCCC-CHHHHHHHHHcCCccchhhhHHHHH--Ccc-----HHHHHhcC
Confidence 3456667777889998 57998 699999999887 999999999998 775 44555544
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.0033 Score=53.65 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=22.7
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
++.|- ++|||+|.+++.+++.+|++-
T Consensus 197 ~vgIK--asGGIrt~~~a~~~i~~ga~~ 222 (250)
T d1p1xa_ 197 TVGFK--PAGGVRTAEDAQKYLAIADEL 222 (250)
T ss_dssp TCEEE--CBSSCCSHHHHHHHHHHHHHH
T ss_pred ceeeE--ecCCCCCHHHHHHHHHHHHHH
Confidence 56676 899999999999999998874
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=96.63 E-value=0.0013 Score=58.48 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=56.8
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHH-----------HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPAD-----------AAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d-----------~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
.++.++++++.+.+|+. .+|||+|.+| +.+++.+|||-|++||+.++ +|... .+....+.+
T Consensus 83 ~~~~I~~i~~~~~vPi~--vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai~--~p~~~----~e~~~~~~n 154 (323)
T d1jvna1 83 MLEVLKQAAKTVFVPLT--VGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVY--AAEKY----YELGNRGDG 154 (323)
T ss_dssp HHHHHHHHTTTCCSCEE--EESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHH--HHHHH----HHTTSCCCS
T ss_pred HHHHHHhhccccceeEE--EecCcccHHHhhhccchhhHHHHHHHHcCCCeEEechHHhh--ChHHH----HHHHhhccc
Confidence 37788888888899999 6899999766 57889999999999999996 66522 223344555
Q ss_pred hhhhhhhhhhcccc
Q 021609 278 PEVLAEVSCGLGEA 291 (310)
Q Consensus 278 ~~~~~~~~~~~~~~ 291 (310)
+.-+.+++..+|..
T Consensus 155 ~~li~~i~~~fGsq 168 (323)
T d1jvna1 155 TSPIETISKAYGAQ 168 (323)
T ss_dssp CSHHHHHHHHHCGG
T ss_pred chhHHHHHHHhCCc
Confidence 66667777777754
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=96.63 E-value=0.0028 Score=54.16 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=48.3
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.++.+.++.+...+|+. .+|||++.+++.+++.+||+-|++||..++ ||.. .+++.+.+
T Consensus 62 ~~~~i~~i~~~~~~pi~--vgGGIr~~e~i~~~l~~Ga~kviigs~~~~--n~~~-l~~~~~~~ 120 (253)
T d1thfd_ 62 MLELVEKVAEQIDIPFT--VGGGIHDFETASELILRGADKVSINTAAVE--NPSL-ITQIAQTF 120 (253)
T ss_dssp HHHHHHHHHTTCCSCEE--EESSCCSHHHHHHHHHTTCSEEEESHHHHH--CTHH-HHHHHHHH
T ss_pred HHHHHHHHHhccCccce--eecccccchhhhhHHhcCCCEEEEChHHhh--ChHH-HHHHHHHc
Confidence 36778888888899998 579999999999999999999999999997 7643 33344443
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=96.58 E-value=0.0069 Score=54.42 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=34.4
Q ss_pred HHhhcCCCCEEEeCCCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHH
Q 021609 215 QTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 215 ~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~G-adgV~VGsai~~a~dp~ 262 (310)
.+++..+.|++ +.||+ +++++.+++..| ||.|.+|++++. ||.
T Consensus 286 ~i~~~~~~~vi--~~g~~-~~~~ae~~l~~g~aD~V~~gR~~ia--dPd 329 (364)
T d1icpa_ 286 PMRKAYKGTFI--VAGGY-DREDGNRALIEDRADLVAYGRLFIS--NPD 329 (364)
T ss_dssp HHHHHCCSCEE--EESSC-CHHHHHHHHHTTSCSEEEESHHHHH--CTT
T ss_pred HHHHhcCCCEE--EECCC-CHHHHHHHHHcCCCceehhHHHHHH--Ccc
Confidence 35555678988 46776 799999999765 999999999998 664
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.43 E-value=0.0033 Score=53.66 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=44.3
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
.+++++++.+...+|+. .+|||++.+++.+++.+||+-|++||..+. ||.
T Consensus 64 ~~~~i~~i~~~~~~pi~--~gGGIr~~e~~~~ll~~G~~kVii~s~~~~--~~~ 113 (252)
T d1h5ya_ 64 FIDSVKRVAEAVSIPVL--VGGGVRSLEDATTLFRAGADKVSVNTAAVR--NPQ 113 (252)
T ss_dssp HHHHHHHHHHHCSSCEE--EESSCCSHHHHHHHHHHTCSEEEESHHHHH--CTH
T ss_pred HHHHHHHHHhhcCCcce--eecccchhhhhhhHhhcCCcEEEecccccC--Ccc
Confidence 35678888877899998 589999999999999999999999999997 664
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=96.39 E-value=0.056 Score=46.33 Aligned_cols=179 Identities=17% Similarity=0.154 Sum_probs=95.1
Q ss_pred cccCCCHHHHHHHHHcCCcEEEecc--CCccccccc--CCCCCCCCHHHHHHHHhhcCcceeecccc--Cc----HHHHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALE--RVPADIRSQ--GGVARMSDPQLIKEIKQSVTIPVMAKARI--GH----FVEAQ 108 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~--~~~~~~~~~--~G~~~~~~~~~i~~i~~~~~iPv~vk~~~--~~----~~~a~ 108 (310)
+..+-|.--|+.++++|++++ .+. ......... +.-.+....+.+++|.+.+++||++..-- +. ...++
T Consensus 20 ~p~~~Da~SAr~~e~aGf~a~-~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~ 98 (275)
T d1s2wa_ 20 IMEAHNGLSARIVQEAGFKGI-WGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVR 98 (275)
T ss_dssp EEEECSHHHHHHHHHHTCSCE-EECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHH
T ss_pred eecCcCHHHHHHHHHcCCCEE-EhhHHHHHHHcCCCCCCccchhhHHHHHHhhhcccCCceeEecccccccchHHHHHHH
Confidence 344566777899999999987 221 000000000 00001112356677788899999996432 32 35678
Q ss_pred HHHHcCCCEEEeCCC----------------CCchhHHHHHH----h-cCCCCcEEEecC------CHHHHH----HHHH
Q 021609 109 ILEAIGIDYVDESEV----------------LTPADEENHIN----K-HNFRIPFVCGCR------NLGEAL----RRIR 157 (310)
Q Consensus 109 ~~~~aGad~Vi~~~~----------------~~~~~~~~~i~----~-~~~~i~~~v~~~------t~~ea~----~~~~ 157 (310)
.+.++|+.++.+-|. .+..+....++ . ..+++.+++-+. ..+|+. +..+
T Consensus 99 ~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~ARtDa~~~~~gl~eai~R~~aY~e 178 (275)
T d1s2wa_ 99 KLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRN 178 (275)
T ss_dssp HHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEEecchhhhhcCCHHHHHHHHHHHHh
Confidence 899999999952221 11222222221 1 234554544332 244544 3357
Q ss_pred hCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEe-CCCCCCCHH
Q 021609 158 EGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHF-AAGGVATPA 236 (310)
Q Consensus 158 ~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~i-A~GGI~t~~ 236 (310)
+|+|.+.+++...... -...+. .....++|+.+. ..+|-.+
T Consensus 179 AGAD~vf~~~~~~~~~-----------------------------------~~~~~~-~~~~~~~pl~~~~~~~~~~~-- 220 (275)
T d1s2wa_ 179 AGADAILMHSKKADPS-----------------------------------DIEAFM-KAWNNQGPVVIVPTKYYKTP-- 220 (275)
T ss_dssp TTCSEEEECCCSSSSH-----------------------------------HHHHHH-HHHTTCSCEEECCSTTTTSC--
T ss_pred cCCCeeeeccccCcHH-----------------------------------HHHHHH-HhhcCCCCEEEecccccccH--
Confidence 8999998875421110 000111 111246788752 2233322
Q ss_pred HHHHHHHcCCCEEEEcccccc
Q 021609 237 DAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 237 d~~~~l~~GadgV~VGsai~~ 257 (310)
+.++.++|+.-|..|...++
T Consensus 221 -~~eL~~lGv~~v~~g~~~~~ 240 (275)
T d1s2wa_ 221 -TDHFRDMGVSMVIWANHNLR 240 (275)
T ss_dssp -HHHHHHHTCCEEEECSHHHH
T ss_pred -HHHHHHcCCCEEEEchHHHH
Confidence 45667899999999998886
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=96.32 E-value=0.0049 Score=52.48 Aligned_cols=50 Identities=28% Similarity=0.415 Sum_probs=44.3
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
..++++.+.+...+|+. .+|||++.+++.+++.+||+-|++||..++ ||.
T Consensus 62 ~~~~i~~i~~~~~~pi~--vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~--n~~ 111 (251)
T d1ka9f_ 62 LLDVVARVAERVFIPLT--VGGGVRSLEDARKLLLSGADKVSVNSAAVR--RPE 111 (251)
T ss_dssp HHHHHHHHHTTCCSCEE--EESSCCSHHHHHHHHHHTCSEEEECHHHHH--CTH
T ss_pred HHHHHHHHHhccCcchh--eeccccCHHHHHHHHHcCCCEEEECchhhh--CHH
Confidence 35678888887889998 579999999999999999999999999997 664
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.26 E-value=0.012 Score=52.76 Aligned_cols=124 Identities=17% Similarity=0.206 Sum_probs=76.9
Q ss_pred cCcceee--ccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHH---hcCCCCcEEEe----cCCHHHHHHHHHhCCC
Q 021609 91 VTIPVMA--KARIGHFVEAQILEAIGIDYVDESEVLTPADEENHIN---KHNFRIPFVCG----CRNLGEALRRIREGAA 161 (310)
Q Consensus 91 ~~iPv~v--k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~---~~~~~i~~~v~----~~t~~ea~~~~~~Gad 161 (310)
.++|++. .+.....+.+..+.+.|-=.++.- -..+.+..+... +....+.+.+. ..+.+.+..+.++|+|
T Consensus 43 ~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvlhr-~~~~~e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd 121 (365)
T d1zfja1 43 LNIPIITAAMDTVTGSKMAIAIARAGGLGVIHK-NMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGAD 121 (365)
T ss_dssp ESSSEEECCCTTTCSHHHHHHHHHTTCEEEECC-SSCHHHHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCS
T ss_pred cCCCEEECCCCCcCCHHHHHHHHHCCCceEEcC-ccCHHHHHHHhhhhhhccCceEEEEEeccCchHHHHHHHHHHcCCC
Confidence 5789887 355566788888888887777522 223333333222 22222333332 2344566667789999
Q ss_pred EEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHH
Q 021609 162 MIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAM 240 (310)
Q Consensus 162 ~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~ 240 (310)
++.+....+ +.. ...+.++++++. .++||+ .|.|.|++.+..
T Consensus 122 ~ivID~A~G--~s~--------------------------------~~~~~i~~ik~~~~~~~iI---aGNV~T~e~a~~ 164 (365)
T d1zfja1 122 AIVIDTAHG--HSA--------------------------------GVLRKIAEIRAHFPNRTLI---AGNIATAEGARA 164 (365)
T ss_dssp EEEECCSCT--TCH--------------------------------HHHHHHHHHHHHCSSSCEE---EEEECSHHHHHH
T ss_pred EEEEECCcc--ccc--------------------------------chhHHHHHHHhhCCCccee---ecccccHHHHHH
Confidence 988764321 100 012344455443 468886 499999999999
Q ss_pred HHHcCCCEEEEc
Q 021609 241 MMQLGCDGVFVG 252 (310)
Q Consensus 241 ~l~~GadgV~VG 252 (310)
++++|||+|.||
T Consensus 165 L~~aGaD~VkVG 176 (365)
T d1zfja1 165 LYDAGVDVVKVG 176 (365)
T ss_dssp HHHTTCSEEEEC
T ss_pred HHhcCCceEEee
Confidence 999999999998
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=96.02 E-value=0.29 Score=40.21 Aligned_cols=176 Identities=17% Similarity=0.097 Sum_probs=102.4
Q ss_pred ccccCCCHHHHHHHHHcCC-cEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCc----HHHHHHHHH
Q 021609 38 VIMDVVTPEQARVAEEAGA-CAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGH----FVEAQILEA 112 (310)
Q Consensus 38 ~i~~~~~~~~A~~~~~~Ga-~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~----~~~a~~~~~ 112 (310)
++.|-.|.+..+.+.+.|. +++ --||. ..+..+ . ...+.++++......|+.+.....+ .+.++.+..
T Consensus 5 l~lDtad~~~i~~~~~~g~i~Gv-TTNPs--l~~k~g-~---~~~~~~~~i~~~~~~~is~ev~~~~~~~m~~~a~~l~~ 77 (218)
T d1vpxa_ 5 IFLDTANLEEIKKGVEWGIVDGV-TTNPT--LISKEG-A---EFKQRVKEICDLVKGPVSAEVVSLDYEGMVREARELAQ 77 (218)
T ss_dssp EEEECCCHHHHHHHHHTTCCCEE-ECCC-----------------CHHHHHHHHHCSCEEEECSCCSHHHHHHHHHHHHT
T ss_pred EEEeCCCHHHHHHHHhcCCcCcC-ccCHH--HHHHcC-C---CHHHHHHHHHhccCCcchhhhccCcHHHHHHHHHHHhc
Confidence 3556677888888888774 665 45543 122212 1 1235666676666778887654332 355666677
Q ss_pred cCCCEEE-eCCCCCchhHHHHHHhcCCCCcEE-EecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEe
Q 021609 113 IGIDYVD-ESEVLTPADEENHINKHNFRIPFV-CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRV 190 (310)
Q Consensus 113 aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~~-v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~ 190 (310)
.+-+.++ ++...+-....+.+.+ -|+.+. ..+.+.+.+..+.++|+++|...-. .+
T Consensus 78 ~~~ni~VKIP~t~~G~~ai~~L~~--~Gi~~n~Tavfs~~Qa~~Aa~aga~yispy~g----R~---------------- 135 (218)
T d1vpxa_ 78 ISEYVVIKIPMTPDGIKAVKTLSA--EGIKTNVTLVFSPAQAILAAKAGATYVSPFVG----RM---------------- 135 (218)
T ss_dssp TCTTEEEEEESSHHHHHHHHHHHH--TTCCEEEEEECSHHHHHHHHHHTCSEEEEBHH----HH----------------
T ss_pred cccceEEEecccccchHHHHHHHH--cCCceeeEEecCHHHHHHHHhcCCCEEEeeec----ch----------------
Confidence 7777776 4432222233444444 354443 3478999999999999999986521 10
Q ss_pred ecccChhHHHHhhhccCCcHHHHHHHhh-----cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 191 LRNMDDDEVFTFAKKIAAPYDLVMQTKQ-----LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 191 l~~~~~d~~~~~~~~~~~~~~~i~~i~~-----~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
.. ......+.+.++.+ ..+..++ .+.+++++++.++...|||.+-+.-.+++
T Consensus 136 -~d-----------~g~d~~~~i~~~~~~~~~~~~~tkil---~AS~r~~~~v~~a~~~G~d~iTip~~v~~ 192 (218)
T d1vpxa_ 136 -DD-----------LSNDGMRMLGEIVEIYNNYGFETEII---AASIRHPMHVVEAALMGVDIVTMPFAVLE 192 (218)
T ss_dssp -HH-----------TTSCHHHHHHHHHHHHHHHTCSCEEE---EBSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred -hh-----------hcccchhhHHHHHHHHhhhcccceee---eeccCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence 00 01122333333222 1355665 36799999999999999999987755543
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.97 E-value=0.021 Score=48.11 Aligned_cols=74 Identities=27% Similarity=0.373 Sum_probs=57.7
Q ss_pred cccCC-CHHHHHHHHHcCCcEEEeccCCcccccccCCCCC-CCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCC
Q 021609 39 IMDVV-TPEQARVAEEAGACAVMALERVPADIRSQGGVAR-MSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGID 116 (310)
Q Consensus 39 i~~~~-~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~-~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad 116 (310)
+.+++ |+..++.+++.|+..++-+. ...|+.+ ..++..++.+++..++|+++.-.++.-.++..+.+.|+|
T Consensus 131 lpy~~~D~v~ak~le~~Gc~~vMplg-------sPIGsg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG~d 203 (243)
T d1wv2a_ 131 MVYTSDDPIIARQLAEIGCIAVMPLA-------GLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCE 203 (243)
T ss_dssp EEEECSCHHHHHHHHHSCCSEEEECS-------SSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCS
T ss_pred EeccCCCHHHHhHHHHcCceeeeecc-------cccccccccccHHHHHhccccCCcceEeecccCCHHHHHHHHHccCC
Confidence 34443 56788899999988876552 2234443 567888998888899999999999888899999999999
Q ss_pred EEE
Q 021609 117 YVD 119 (310)
Q Consensus 117 ~Vi 119 (310)
+|+
T Consensus 204 gVL 206 (243)
T d1wv2a_ 204 AVL 206 (243)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=95.88 E-value=0.026 Score=50.96 Aligned_cols=68 Identities=18% Similarity=0.317 Sum_probs=48.5
Q ss_pred CHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh-cCCCCEEE
Q 021609 148 NLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ-LGRLPVVH 226 (310)
Q Consensus 148 t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~-~~~iPVi~ 226 (310)
+.+.+..+.++|+|++.+....+ +.. ...++++++++ ..++|||
T Consensus 152 ~~~ra~~L~~aG~D~ivID~AhG--~s~--------------------------------~~~~~i~~ik~~~~~v~vI- 196 (388)
T d1eepa_ 152 TIERVEELVKAHVDILVIDSAHG--HST--------------------------------RIIELIKKIKTKYPNLDLI- 196 (388)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCC--SSH--------------------------------HHHHHHHHHHHHCTTCEEE-
T ss_pred HHHHHHHHHhhccceeeeecccc--chH--------------------------------HHHHHHHHHHHHCCCCcee-
Confidence 34556667788999998865432 100 01345555654 3578887
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEc
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VG 252 (310)
.|+|.|++.+..++++|||+|.||
T Consensus 197 --aGNV~T~e~a~~L~~~GaD~VkVG 220 (388)
T d1eepa_ 197 --AGNIVTKEAALDLISVGADCLKVG 220 (388)
T ss_dssp --EEEECSHHHHHHHHTTTCSEEEEC
T ss_pred --eccccCHHHHHHHHhcCCCeeeec
Confidence 499999999999999999999998
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=95.83 E-value=0.0074 Score=49.49 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=56.8
Q ss_pred cCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-
Q 021609 41 DVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD- 119 (310)
Q Consensus 41 ~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi- 119 (310)
++.+.+.+..+.+.|++.+..-+....... ..........+.++++++.+++||++...+...+++..+.++|||+|.
T Consensus 125 ~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~i 203 (222)
T d1y0ea_ 125 DIATVEEAKNAARLGFDYIGTTLHGYTSYT-QGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (222)
T ss_dssp ECSSHHHHHHHHHTTCSEEECTTTTSSTTS-TTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cCCCHHHHHHHHHcCCCeEEEeccCCcccc-cCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 456678888899999998722110000000 000101122467888888999999998888777899999999999995
Q ss_pred eCCCCCchhH
Q 021609 120 ESEVLTPADE 129 (310)
Q Consensus 120 ~~~~~~~~~~ 129 (310)
++....|.++
T Consensus 204 GsAi~rp~~~ 213 (222)
T d1y0ea_ 204 GGAITRPKEI 213 (222)
T ss_dssp CHHHHCHHHH
T ss_pred chhhcCHHHH
Confidence 5533334444
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=95.82 E-value=0.024 Score=49.10 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=32.6
Q ss_pred HHHHhhcCCCCEEEeCCCCCCCHHHHHHH----HHcCCCEEEEccccccC
Q 021609 213 VMQTKQLGRLPVVHFAAGGVATPADAAMM----MQLGCDGVFVGSGVFKS 258 (310)
Q Consensus 213 i~~i~~~~~iPVi~iA~GGI~t~~d~~~~----l~~GadgV~VGsai~~a 258 (310)
..++.....+|+++ .+||. +.+++.+. ++.||.|+++||.|++.
T Consensus 211 ~~~~~~~~~~p~vv-Ls~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~~ 258 (291)
T d1to3a_ 211 SQRLNGHINMPWVI-LSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS 258 (291)
T ss_dssp HHHHHHTCCSCEEE-CCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred HHHHhhcCCCcEEE-EeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhhC
Confidence 44455556889775 68887 56666554 45899999999999984
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=95.65 E-value=0.0085 Score=50.46 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=46.1
Q ss_pred CCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 021609 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKR 264 (310)
Q Consensus 207 ~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~ 264 (310)
....++++.+.+...+|+- .+|||++.+++.+++..|++-|+++|..+. ||...
T Consensus 60 ~~~~~~i~~i~~~~~~pi~--vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~--~~~~~ 113 (239)
T d1vzwa1 60 GDNRALIAEVAQAMDIKVE--LSGGIRDDDTLAAALATGCTRVNLGTAALE--TPEWV 113 (239)
T ss_dssp CCCHHHHHHHHHHCSSEEE--EESSCCSHHHHHHHHHTTCSEEEECHHHHH--CHHHH
T ss_pred cchHHHHHHHHhhcCcceE--eecccccchhhhhhhccccccchhhHHhhh--ccccc
Confidence 3456788888887889998 589999999999999999999999999997 66533
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.48 Score=40.41 Aligned_cols=183 Identities=13% Similarity=0.091 Sum_probs=109.5
Q ss_pred ccCCCHHHH----HHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccc-cCcHHHHHHHHHcC
Q 021609 40 MDVVTPEQA----RVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKAR-IGHFVEAQILEAIG 114 (310)
Q Consensus 40 ~~~~~~~~A----~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~-~~~~~~a~~~~~aG 114 (310)
.++.+.+.+ +++++..+..|+++.+. ..+..+ . ......++.+.+..++||.+..- ....+.++.+.++|
T Consensus 22 fNv~~~e~~~avi~AAe~~~sPvIlq~~~~--~~~~~~-~--~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~ai~~G 96 (284)
T d1gvfa_ 22 FNIHNAETIQAILEVCSEMRSPVILAGTPG--TFKHIA-L--EEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAG 96 (284)
T ss_dssp EECCSHHHHHHHHHHHHHHTCCCEEEECTT--HHHHSC-H--HHHHHHHHHHHHHTTSCBEEEEEEECCHHHHHHHHHTT
T ss_pred EEECCHHHHHHHHHHHHHHCCCEEEEcCHh--HHhhCC-H--HHHHHHHHHHHHhcCCeEEeeeccccchHHHHHHHhcC
Confidence 345566544 44566777766666311 111111 0 01124555666778999998642 23578889999999
Q ss_pred CCEEE--eCCCCCch-------hHHHHHHhcCC------CCcEE--------E---ecCCHHHHHHHH-HhCCCEEEEcC
Q 021609 115 IDYVD--ESEVLTPA-------DEENHINKHNF------RIPFV--------C---GCRNLGEALRRI-REGAAMIRTKG 167 (310)
Q Consensus 115 ad~Vi--~~~~~~~~-------~~~~~i~~~~~------~i~~~--------v---~~~t~~ea~~~~-~~Gad~V~v~g 167 (310)
.+-|- .+. ++.+ ++.++..+.+. +..-. . ..++++++.+-. +.|+|.+.+.-
T Consensus 97 ftSVMiD~S~-lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvai 175 (284)
T d1gvfa_ 97 VRSAMIDGSH-FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAI 175 (284)
T ss_dssp CCEEEECCTT-SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECS
T ss_pred CCeEEEECCC-CCHHHHHHHHHHHHHHHHhhccceeeeeeeeccccccccccccccccCCHHHHHHHHHHhCCCEEeeec
Confidence 99984 332 3322 33344333321 10000 0 125778888855 56999887652
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCC
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD 247 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~Gad 247 (310)
..--| .++ ....-+++.++++++..++|++.=.+.|+ ..+++.++.+.|..
T Consensus 176 Gt~HG-----------------~y~-----------~~p~l~~~~L~~i~~~~~vPLVlHGgSG~-~~e~i~~ai~~Gi~ 226 (284)
T d1gvfa_ 176 GTAHG-----------------LYS-----------KTPKIDFQRLAEIREVVDVPLVLHGASDV-PDEFVRRTIELGVT 226 (284)
T ss_dssp SCCSS-----------------CCS-----------SCCCCCHHHHHHHHHHCCSCEEECCCTTC-CHHHHHHHHHTTEE
T ss_pred Cceee-----------------ccC-----------CCCccccchhhhhhccccCCeEeeCCCCC-CHHHHHHHHHcCeE
Confidence 21111 000 01233578899999889999885456677 57889999999999
Q ss_pred EEEEcccccc
Q 021609 248 GVFVGSGVFK 257 (310)
Q Consensus 248 gV~VGsai~~ 257 (310)
=+=+++.+-.
T Consensus 227 KiNi~T~l~~ 236 (284)
T d1gvfa_ 227 KVNVATELKI 236 (284)
T ss_dssp EEEECHHHHH
T ss_pred EEEechHHHH
Confidence 9999998874
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.33 Score=39.92 Aligned_cols=174 Identities=14% Similarity=0.090 Sum_probs=99.6
Q ss_pred cccCCCHHHHHHHHHcC-CcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhc--CcceeeccccCc----HHHHHHHH
Q 021609 39 IMDVVTPEQARVAEEAG-ACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSV--TIPVMAKARIGH----FVEAQILE 111 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~G-a~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~--~iPv~vk~~~~~----~~~a~~~~ 111 (310)
+.|-.|.+..+.+.+.| .+++ --||. ..+..+ . .....++++++.+ .-|+.+...... .++++.+.
T Consensus 4 ~lDtAd~~eik~~~~~~~i~Gv-TTNPs--ll~k~~-~---~~~~~~~~i~~~~~~~~~is~ev~~~~~~~mi~~A~~l~ 76 (220)
T d1l6wa_ 4 YLDTSDVVAVKALSRIFPLAGV-TTNPS--IIAAGK-K---PLDVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDALKLR 76 (220)
T ss_dssp EEECCCHHHHHHHHTTSCCCEE-ECCHH--HHHHHC-S---CHHHHHHHHHHHTTTCSEEEEECCCSSHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHhcCCCCEE-ecCHH--HHHhCC-C---CHHHHHHHHHHHhCcCCeEEeEEeeehhhhhHHHHHHHH
Confidence 34455666677777666 4454 33431 111111 1 1134566666554 456666543322 34566666
Q ss_pred HcCCCEEE-eCCCCCchhHHHHHHhcCCCCcE-EEecCCHHHHHHHHHhCCCEEEEcC-CCCCcchHHHHHHHHhhccce
Q 021609 112 AIGIDYVD-ESEVLTPADEENHINKHNFRIPF-VCGCRNLGEALRRIREGAAMIRTKG-EAGTGNIIEAVRHVRSVMGDI 188 (310)
Q Consensus 112 ~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~-~v~~~t~~ea~~~~~~Gad~V~v~g-~~~~~~~~~~~~~~r~~~~~~ 188 (310)
+.+-+.++ ++...+-.+..+.+.+. |+.+ +..+.+...+..++++|++||...- +. .
T Consensus 77 ~~~~nv~IKIP~t~~g~~ai~~L~~~--Gi~vn~Tavfs~~Qa~~Aa~aga~yvspy~gR~-----~------------- 136 (220)
T d1l6wa_ 77 SIIADIVVKVPVTAEGLAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRI-----D------------- 136 (220)
T ss_dssp HHSTTCEEEEECSHHHHHHHHHHHHH--TCCEEEEEECSHHHHHHHHHHTCSEEEEBHHHH-----H-------------
T ss_pred HhccccEEEeeccccccchhhhhhhc--ccchhhhhcccHHHHHHhhhcCCcEEeeeeeeh-----h-------------
Confidence 66667665 44432222334444443 4443 4447899999999999999998652 11 0
Q ss_pred EeecccChhHHHHhhhccCCcHHHHHHHhh-----cCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 189 RVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ-----LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 189 ~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~-----~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
. ....+.+.++++.+ ..+..++ .+.+++.+++.++..+|||.+-+.-.+++
T Consensus 137 ----d-----------~g~dg~~~i~~~~~~~~~~~~~tkIl---~AS~R~~~~v~~~~~~G~d~iTip~~v~~ 192 (220)
T d1l6wa_ 137 ----A-----------QGGSGIQTVTDLHQLLKMHAPQAKVL---AASFKTPRQALDCLLAGCESITLPLDVAQ 192 (220)
T ss_dssp ----H-----------TTSCHHHHHHHHHHHHHHHCTTCEEE---EBCCSSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred ----h-----------cccCChHHHHHHHHHHHhcCCCceEe---ehhcCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence 0 01222333333322 1345565 48899999999999999999998866654
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.36 E-value=0.043 Score=48.58 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=64.3
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--------CCCchhHHHHHHh-cCCCCcEEEe--cCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE--------VLTPADEENHINK-HNFRIPFVCG--CRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~--------~~~~~~~~~~i~~-~~~~i~~~v~--~~t~ 149 (310)
.+.+..+++..+.|+++|.... .+++..+.++|+|.+..+. .....+....+.. .+.++++++| +++.
T Consensus 206 ~~~i~~l~~~~~~pii~Kgi~~-~~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G 284 (349)
T d1tb3a1 206 WNDLSLLQSITRLPIILKGILT-KEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTG 284 (349)
T ss_dssp HHHHHHHHTTCCSCEEEEEECS-HHHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSH
T ss_pred HHHHHHHHHhcCCCcccchhhh-hHHHHHHHHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcH
Confidence 4688888999999999997643 4788999999999996321 1223333333333 4556888887 8999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 021609 150 GEALRRIREGAAMIRTK 166 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~ 166 (310)
.|+.++..+||+.|.+.
T Consensus 285 ~Dv~KALALGA~~V~ig 301 (349)
T d1tb3a1 285 TDVLKALALGARCIFLG 301 (349)
T ss_dssp HHHHHHHHTTCSCEEES
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 99999999999999885
|
| >d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.12 E-value=0.035 Score=46.30 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=24.3
Q ss_pred CCCEEEeCCCCCCCHHHHHHHHHc-------CCCEEEEccc
Q 021609 221 RLPVVHFAAGGVATPADAAMMMQL-------GCDGVFVGSG 254 (310)
Q Consensus 221 ~iPVi~iA~GGI~t~~d~~~~l~~-------GadgV~VGsa 254 (310)
++-|= ++|||+|.+++.+++++ |+.-+-..|.
T Consensus 184 ~vgiK--asGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs~ 222 (226)
T d1vcva1 184 RLGVK--MAGGIRTREQAKAIVDAIGWGEDPARVRLGTSTP 222 (226)
T ss_dssp CCEEE--EESSCCSHHHHHHHHHHHCSCSCTTTEEEEESCG
T ss_pred ceeEE--CcCCCCCHHHHHHHHHhhhcCCCCCCEEEecCCh
Confidence 45666 79999999999999987 6666554443
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=94.55 E-value=0.22 Score=44.13 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=76.9
Q ss_pred cCcceee--ccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-cCCC--CcEEEecCC-HHHHHHHHHhCCCEEE
Q 021609 91 VTIPVMA--KARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINK-HNFR--IPFVCGCRN-LGEALRRIREGAAMIR 164 (310)
Q Consensus 91 ~~iPv~v--k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~~~~--i~~~v~~~t-~~ea~~~~~~Gad~V~ 164 (310)
.++|++. .+.....+.+..+.+.|.=.++ +.-.++++..+...+ .... ......... .+.+..+.++|++++.
T Consensus 49 l~iPIIsAnMDTVt~~~mA~~la~~Gglgvi-hR~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~ 127 (362)
T d1pvna1 49 LKIPLVSAIMQSVSGEKMAIALAREGGISFI-FGSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLC 127 (362)
T ss_dssp ESSSEEECSCTTTCSHHHHHHHHHTTCEEEE-CCSSCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEE
T ss_pred cCCcEEecCCCCcCCHHHHHHHHHCCCEEEE-eecCCHHHHHHHhhhhhhcccccccccchhhhHHHHHHHhhcCceEEe
Confidence 4789887 3565667778888888866654 333455555555544 2233 223333333 3445556788999998
Q ss_pred EcCCCC-CcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh-c-CCCCEEEeCCCCCCCHHHHHHH
Q 021609 165 TKGEAG-TGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ-L-GRLPVVHFAAGGVATPADAAMM 241 (310)
Q Consensus 165 v~g~~~-~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~-~-~~iPVi~iA~GGI~t~~d~~~~ 241 (310)
+....+ ..+. .+.++.+++ . .++||+ .|.|.|++.+..+
T Consensus 128 IDvAhG~~~~v-----------------------------------~~~i~~ir~~~~~~~~Ii---AGNVaT~e~~~~L 169 (362)
T d1pvna1 128 IDSSDGFSEWQ-----------------------------------KITIGWIREKYGDKVKVG---AGNIVDGEGFRYL 169 (362)
T ss_dssp ECCSCCCBHHH-----------------------------------HHHHHHHHHHHGGGSCEE---EEEECSHHHHHHH
T ss_pred echhccchhHH-----------------------------------HHHHHHHHHhhccceeee---cccccCHHHHHHH
Confidence 765432 1110 123333322 1 347886 4899999999999
Q ss_pred HHcCCCEEEEc
Q 021609 242 MQLGCDGVFVG 252 (310)
Q Consensus 242 l~~GadgV~VG 252 (310)
+++|+|+|-||
T Consensus 170 ~~aGaD~vkVG 180 (362)
T d1pvna1 170 ADAGADFIKIG 180 (362)
T ss_dssp HHHTCSEEEEC
T ss_pred HHhCCcEEEec
Confidence 99999999999
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.50 E-value=0.056 Score=44.24 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=55.1
Q ss_pred ccCCCHHHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 40 MDVVTPEQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 40 ~~~~~~~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
..+.+++.++...++|++.+ ..+ .... ...+. .......+.++++..++|+++...+..-+++..+.++|||+|
T Consensus 135 ~~v~t~~~a~~a~~~Gad~i-~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~ipvia~GGI~t~~d~~~al~~GAd~V 209 (230)
T d1yxya1 135 ADISTFDEGLVAHQAGIDFV-GTTLSGYT---PYSRQ-EAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGI 209 (230)
T ss_dssp EECSSHHHHHHHHHTTCSEE-ECTTTTSS---TTSCC-SSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEE
T ss_pred cCCCCHHHHHHHHhcCCCEE-Eeeccccc---ccccc-cchHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 35677899999999999977 332 1100 00001 112234466666778999999888776788888899999999
Q ss_pred E-eCCCCCchhH
Q 021609 119 D-ESEVLTPADE 129 (310)
Q Consensus 119 i-~~~~~~~~~~ 129 (310)
. ++....|.++
T Consensus 210 ~vGsAi~~p~~i 221 (230)
T d1yxya1 210 VVGGAITRPKEI 221 (230)
T ss_dssp EECHHHHCHHHH
T ss_pred EEChhhcCHHHH
Confidence 5 4433334444
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=94.20 E-value=0.26 Score=41.37 Aligned_cols=87 Identities=15% Similarity=0.245 Sum_probs=60.8
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc-C-------Chhh
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY-S-------DPEV 280 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~-~-------~~~~ 280 (310)
.++.+..+++.+++||+. =.. |-++-++.++...|||+|++--+++. + ...+.|.+..++. + +++.
T Consensus 89 s~~~l~~vr~~~~~PiLr-KDF-Iid~~QI~ea~~~GADaiLLI~~~L~---~-~~l~~l~~~a~~lgle~LvEvh~~~E 162 (251)
T d1i4na_ 89 DPAFVRAARNLTCRPILA-KDF-YIDTVQVKLASSVGADAILIIARILT---A-EQIKEIYEAAEELGMDSLVEVHSRED 162 (251)
T ss_dssp CTHHHHHHHTTCCSCEEE-ECC-CCSTHHHHHHHHTTCSEEEEEGGGSC---H-HHHHHHHHHHHTTTCEEEEEECSHHH
T ss_pred CHHHHHHHhhcccCchhh-hhh-hhCHHHHHHHHhhccceEEeeccccc---H-HHHHHHHHHHHHhCCeeecccCCHHH
Confidence 456677888888999987 233 44899999999999999999988884 3 3344555555442 2 2343
Q ss_pred hhhhhhhcccchhcccCccch
Q 021609 281 LAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~ 301 (310)
+.+.-+..+..+.|+|-+|++
T Consensus 163 l~~al~~~~a~iiGINnRdL~ 183 (251)
T d1i4na_ 163 LEKVFSVIRPKIIGINTRDLD 183 (251)
T ss_dssp HHHHHTTCCCSEEEEECBCTT
T ss_pred HHHHhcccccceeeeeecchh
Confidence 444334456789999988765
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.89 E-value=0.035 Score=49.92 Aligned_cols=81 Identities=21% Similarity=0.169 Sum_probs=54.2
Q ss_pred cccCCCHHHHHHHHHcCCcEE-Eecc---CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC
Q 021609 39 IMDVVTPEQARVAEEAGACAV-MALE---RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG 114 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i-~~L~---~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG 114 (310)
...+.+++.|+.+.++|||+| +..- .+++.....-|.-.......+.+.++.+++||+....+.+.-++-.++.+|
T Consensus 165 aGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~G 244 (378)
T d1jr1a1 165 GGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALG 244 (378)
T ss_dssp EEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTT
T ss_pred ecccccHHHHHHHHHhCCCEEeeccccccccccccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEee
Confidence 456788999999999999998 4442 222222111122111123345555667899999988776666778899999
Q ss_pred CCEEE
Q 021609 115 IDYVD 119 (310)
Q Consensus 115 ad~Vi 119 (310)
||+|-
T Consensus 245 Ad~VM 249 (378)
T d1jr1a1 245 ASTVM 249 (378)
T ss_dssp CSEEE
T ss_pred cceee
Confidence 99994
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=93.87 E-value=0.61 Score=37.87 Aligned_cols=136 Identities=19% Similarity=0.147 Sum_probs=81.2
Q ss_pred HHHHHHhhcCcceeeccccCc----HHHHHHHHHcCCCEEE-eCCCCCchhHHHHHHhcCCCCcE-EEecCCHHHHHHHH
Q 021609 83 LIKEIKQSVTIPVMAKARIGH----FVEAQILEAIGIDYVD-ESEVLTPADEENHINKHNFRIPF-VCGCRNLGEALRRI 156 (310)
Q Consensus 83 ~i~~i~~~~~iPv~vk~~~~~----~~~a~~~~~aGad~Vi-~~~~~~~~~~~~~i~~~~~~i~~-~v~~~t~~ea~~~~ 156 (310)
.++.+.+..+-|+.+...... .+.++.+...+-+.++ ++...+-....+.+.+ .|+.+ +..+.|...+..+.
T Consensus 51 ~~~~~~~~~~~~is~ev~~~~~e~m~~~a~~l~~~~~ni~iKIP~t~~G~~a~~~L~~--~Gi~vn~T~vfs~~Qa~~Aa 128 (211)
T d1wx0a1 51 HLRAICETVGGPVSAEVTALEAEAMVAEGRRLAAIHPNIVVKLPTTEEGLKACKRLSA--EGIKVNMTLIFSANQALLAA 128 (211)
T ss_dssp HHHHHHHHHTSCEEEECCCSSHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHH--TTCCEEEEEECSHHHHHHHH
T ss_pred HHHHHHhhccCCeEEEEeeCcHHHHHHHHHHHhhcCCceEEEeccchhhhHHHHHHhh--cCCceeEEEecCHHHHHHHH
Confidence 455555555667777543322 2445555566667776 4443222233444443 35443 34478999999999
Q ss_pred HhCCCEEEEc-CCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhh----c-CCCCEEEeCCC
Q 021609 157 REGAAMIRTK-GEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQ----L-GRLPVVHFAAG 230 (310)
Q Consensus 157 ~~Gad~V~v~-g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~----~-~~iPVi~iA~G 230 (310)
++|++||... ||. . . ......+.++++.+ . .+..++ .+
T Consensus 129 ~aga~yispyvgR~-----~-----------------d-----------~g~d~~~~~~~~~~~~~~~~~~tkil---~A 172 (211)
T d1wx0a1 129 RAGASYVSPFLGRV-----D-----------------D-----------ISWDGGELLREIVEMIQVQDLPVKVI---AA 172 (211)
T ss_dssp HTTCSEEEEBHHHH-----H-----------------H-----------TTSCHHHHHHHHHHHHHHTTCSCEEE---EB
T ss_pred HcCCCEEEEeeecc-----h-----------------h-----------ccccchhHHHHHHHHHHhccccceeE---ee
Confidence 9999999865 210 0 0 01122333333322 1 356676 36
Q ss_pred CCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 231 GVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 231 GI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
.+++++++.++..+|||.+-+.-.++
T Consensus 173 S~R~~~~~~~~~~~G~d~vTi~~~v~ 198 (211)
T d1wx0a1 173 SIRHPRHVTEAALLGADIATMPHAVF 198 (211)
T ss_dssp CCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred ecCCHHHHHHHHHcCCCEEEeCHHHH
Confidence 79999999999999999998764444
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=93.73 E-value=0.22 Score=41.82 Aligned_cols=77 Identities=19% Similarity=0.330 Sum_probs=52.3
Q ss_pred EecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCC
Q 021609 144 CGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLP 223 (310)
Q Consensus 144 v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iP 223 (310)
+.+.+++++..+.+.|+|-|-+-..-.. -+++|+..+++.+++..++|
T Consensus 5 vcv~s~~~a~~A~~~GAdRIELc~~l~~--------------------------------GGlTPS~g~i~~~~~~~~iP 52 (247)
T d1twda_ 5 ICCYSMECALTAQQNGADRVELCAAPKE--------------------------------GGLTPSLGVLKSVRQRVTIP 52 (247)
T ss_dssp EEESSHHHHHHHHHTTCSEEEECBCGGG--------------------------------TCBCCCHHHHHHHHHHCCSC
T ss_pred EEeCCHHHHHHHHHcCCCEEEEcCCccc--------------------------------CCCCCCHHHHHHHHHhcCCC
Confidence 4567899999999999998876422100 02456677888887777888
Q ss_pred EEEe--CCCC--CCCHH-------HHHHHHHcCCCEEEEc
Q 021609 224 VVHF--AAGG--VATPA-------DAAMMMQLGCDGVFVG 252 (310)
Q Consensus 224 Vi~i--A~GG--I~t~~-------d~~~~l~~GadgV~VG 252 (310)
|.+. .-+| +.|.+ |+..+.++|+|||++|
T Consensus 53 v~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~dGvV~G 92 (247)
T d1twda_ 53 VHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTG 92 (247)
T ss_dssp EEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred eEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEE
Confidence 8653 2333 33443 4555667899999988
|
| >d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Protozoan orotidine monophosphate decarboxylase species: Plasmodium berghei [TaxId: 5821]
Probab=93.62 E-value=0.2 Score=43.80 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=40.8
Q ss_pred HHHHHHhhc-CCCCEEEeCCCCCCC-HHHHHHHH------HcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 211 DLVMQTKQL-GRLPVVHFAAGGVAT-PADAAMMM------QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 211 ~~i~~i~~~-~~iPVi~iA~GGI~t-~~d~~~~l------~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
+.++.+++. .+.++++. ||+. ..|..+.+ ..|++.+++||+|++++||...++++.+.+.+.
T Consensus 249 ~el~~iR~~~~~~~iL~P---GIGaQggDq~rv~~~~~a~~~g~~~ivvgR~I~~A~dp~~aa~~i~~~i~~~ 318 (324)
T d2fdsa1 249 EEMKIIRNKFPDSYILSP---GIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQIIQI 318 (324)
T ss_dssp HHHHHHHHHSTTCCEEEC---CC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEeC---cccCCCCCHHHHhChhhhhhcCceEEEeChhhccCCCHHHHHHHHHHHHHHH
Confidence 445555543 46677643 3322 23444444 247889999999999999999999888877643
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=93.55 E-value=1.9 Score=36.84 Aligned_cols=184 Identities=17% Similarity=0.170 Sum_probs=108.2
Q ss_pred ccCCCHHH----HHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccC-cHHHHHHHHHcC
Q 021609 40 MDVVTPEQ----ARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIG-HFVEAQILEAIG 114 (310)
Q Consensus 40 ~~~~~~~~----A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~-~~~~a~~~~~aG 114 (310)
.++.+.+. .+++++.....|+++.+. . ..+.|. .....+....+..++||.+.+--+ .++.+..+.++|
T Consensus 22 fN~~n~e~~~avi~AAee~~sPvIiq~s~~--~-~~~~~~---~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~ai~~G 95 (305)
T d1rvga_ 22 FNVNNMEFLQAVLEAAEEQRSPVILALSEG--A-MKYGGR---ALTLMAVELAKEARVPVAVHLDHGSSYESVLRALRAG 95 (305)
T ss_dssp EECCSHHHHHHHHHHHHHTTCCEEEEEEHH--H-HHHHHH---HHHHHHHHHHHHCSSCEEEEEEEECSHHHHHHHHHTT
T ss_pred EEECCHHHHHHHHHHHHHHCCCEEEECCcc--H-HhHccH---HHHHHHHHHHhccCCcEEEeehhccChhhhHHHHhcC
Confidence 34556654 445567777777666311 1 111211 012345555667899999874333 568889999999
Q ss_pred CCEEE--eCCCCCch-------hHHHHHHhcCC------C-Cc-----EEEe-----cCCHHHHHHHH-HhCCCEEEEcC
Q 021609 115 IDYVD--ESEVLTPA-------DEENHINKHNF------R-IP-----FVCG-----CRNLGEALRRI-REGAAMIRTKG 167 (310)
Q Consensus 115 ad~Vi--~~~~~~~~-------~~~~~i~~~~~------~-i~-----~~v~-----~~t~~ea~~~~-~~Gad~V~v~g 167 (310)
.+-|- .+. ++.+ ++.++....+. | +. ...+ .+++++|.+-. +.|+|.+.+.-
T Consensus 96 ftSVMiDgS~-l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvai 174 (305)
T d1rvga_ 96 FTSVMIDKSH-EDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAI 174 (305)
T ss_dssp CSEEEECCTT-SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECS
T ss_pred CceEEEcCcc-ccHHHHHHHHHHHHHHhchhceeEEeeeeeeecccccccccccccccCCHHHHHHHHHHhCccHhhhhh
Confidence 99994 332 2222 33344333321 1 10 0011 24788888855 67999988652
Q ss_pred CCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCC-----------------
Q 021609 168 EAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAG----------------- 230 (310)
Q Consensus 168 ~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~G----------------- 230 (310)
..--| .++.. ....-+++.++++.+.+++|+++=.+.
T Consensus 175 Gn~HG-----------------~Yk~~---------~~~~l~~~~l~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~g~~l 228 (305)
T d1rvga_ 175 GTSHG-----------------AYKGK---------GRPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEI 228 (305)
T ss_dssp SCCSS-----------------SBCSS---------SSCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCC
T ss_pred hhhhc-----------------ccCCC---------CcccchHHHHHHHHhccCCCeeccCCccccHHHHhhhcccCccc
Confidence 21101 00000 011245788999998899999853222
Q ss_pred ----CCCCHHHHHHHHHcCCCEEEEcccccc
Q 021609 231 ----GVATPADAAMMMQLGCDGVFVGSGVFK 257 (310)
Q Consensus 231 ----GI~t~~d~~~~l~~GadgV~VGsai~~ 257 (310)
|+ +.+++.++++.|..=+=+++.+..
T Consensus 229 hg~sG~-~~e~i~~ai~~GV~KiNi~T~l~~ 258 (305)
T d1rvga_ 229 GEAAGI-HPEDIKKAISLGIAKINTDTDLRL 258 (305)
T ss_dssp CSCBCC-CHHHHHHHHHTTEEEEEECHHHHH
T ss_pred CCCCCC-CHHHHHHHHHcCeEEEEeChHHHH
Confidence 66 589999999999999999997764
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=93.34 E-value=0.36 Score=42.27 Aligned_cols=85 Identities=18% Similarity=0.158 Sum_probs=62.2
Q ss_pred HHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--------CCCchhHHHHHHh-cCCCCcEEEe--cCCH
Q 021609 81 PQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE--------VLTPADEENHINK-HNFRIPFVCG--CRNL 149 (310)
Q Consensus 81 ~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~--------~~~~~~~~~~i~~-~~~~i~~~v~--~~t~ 149 (310)
.+.++.+++..+.|+++|...+ .+++..+.+.|++.+..++ ...+.+....+.+ .+.++++++| +++.
T Consensus 213 ~~~v~~l~~~~~~~~~~kg~~~-~~da~~a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G 291 (359)
T d1goxa_ 213 WKDVAWLQTITSLPILVKGVIT-AEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG 291 (359)
T ss_dssp HHHHHHHHHHCCSCEEEECCCS-HHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSH
T ss_pred HHHHHHHHhhcccceeeecccc-hHHHHHHHHccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcH
Confidence 3457777777889999987644 4788999999999996321 1223333333333 4456888887 8999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 021609 150 GEALRRIREGAAMIRTK 166 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~ 166 (310)
-|+.++..+|||.|.+.
T Consensus 292 ~Di~KALaLGAd~vgig 308 (359)
T d1goxa_ 292 TDVFKALALGAAGVFIG 308 (359)
T ss_dssp HHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999884
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=92.95 E-value=0.16 Score=42.85 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=59.4
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc-c-------CChh
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH-Y-------SDPE 279 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~-~-------~~~~ 279 (310)
..++.+..+++.+++||+. --=|-++-++.++..+|||+|++-.+++. +. . .+|.+..++ + .+++
T Consensus 93 Gs~~dl~~v~~~~~iPvLr--KDFIid~~QI~ea~~~GADaVLLIaall~--~~--l-~~l~~~A~~lgl~~LVEvh~~~ 165 (254)
T d1vc4a_ 93 GSLLDLKRVREAVDLPLLR--KDFVVDPFMLEEARAFGASAALLIVALLG--EL--T-GAYLEEARRLGLEALVEVHTER 165 (254)
T ss_dssp CCHHHHHHHHHHCCSCEEE--ESCCCSHHHHHHHHHTTCSEEEEEHHHHG--GG--H-HHHHHHHHHHTCEEEEEECSHH
T ss_pred ccHHHHHHHHHHcCCCccc--CCccccHHHHHHHHhccchHHHHHHHHHH--HH--H-HHHHHHHHHhCCceEEEeccHH
Confidence 3466677788888999995 45677999999999999999999998875 21 1 224333332 1 2233
Q ss_pred hhhhhhhhcccchhcccCccch
Q 021609 280 VLAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
.+ +.....|..+.|+|=+|++
T Consensus 166 El-~~a~~~~a~iIGINnRdL~ 186 (254)
T d1vc4a_ 166 EL-EIALEAGAEVLGINNRDLA 186 (254)
T ss_dssp HH-HHHHHHTCSEEEEESBCTT
T ss_pred HH-hhhhcCCCCEEEEeccchh
Confidence 33 3445668899999877664
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.75 E-value=0.36 Score=42.85 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=77.8
Q ss_pred cCcceee--ccccCcHHHHHHHHHcCCCEEEeCCCCCchhHHHHHHh-c------------CCCCc--EEEecCCHHHHH
Q 021609 91 VTIPVMA--KARIGHFVEAQILEAIGIDYVDESEVLTPADEENHINK-H------------NFRIP--FVCGCRNLGEAL 153 (310)
Q Consensus 91 ~~iPv~v--k~~~~~~~~a~~~~~aGad~Vi~~~~~~~~~~~~~i~~-~------------~~~i~--~~v~~~t~~ea~ 153 (310)
.++|++. .+.....+.+..+.+.|.=.++ +...++++..+.+++ . ...+. ..++....+.+.
T Consensus 44 l~iPIiss~MDtV~~~~mA~~la~~Gglgvl-hr~~~~e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~~~~r~~ 122 (368)
T d2cu0a1 44 LNIPILSAAMDTVTEWEMAVAMAREGGLGVI-HRNMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFDIKRAI 122 (368)
T ss_dssp ESSSEEECCCTTTCSHHHHHHHHHTTCEEEE-CSSSCHHHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEECTTCHHHHH
T ss_pred cCCCEEeCCCCCcCCHHHHHHHHHCCCeeEe-cccCCHHHHHHHHHhhhhhhhccccccccCccEEEEeccChHHHHHHH
Confidence 5789887 3566667888888888866665 333345554444432 1 01122 333445667777
Q ss_pred HHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCC
Q 021609 154 RRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVA 233 (310)
Q Consensus 154 ~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~ 233 (310)
.+.++|+|++.+....+ +.. ...+.++++++..++|++ .|+|.
T Consensus 123 ~l~~aGvd~ivID~A~G--h~~--------------------------------~~i~~lK~ir~~~~~~vI---aGNVa 165 (368)
T d2cu0a1 123 ELDKAGVDVIVVDTAHA--HNL--------------------------------KAIKSMKEMRQKVDADFI---VGNIA 165 (368)
T ss_dssp HHHHTTCSEEEEECSCC--CCH--------------------------------HHHHHHHHHHHTCCSEEE---EEEEC
T ss_pred HHHHcCCCEEEecCccc--chh--------------------------------hhhhhhhhhhhhccccee---ecccc
Confidence 78889999998765432 100 013356777776678886 39999
Q ss_pred CHHHHHHHHHcCCCEEEEc
Q 021609 234 TPADAAMMMQLGCDGVFVG 252 (310)
Q Consensus 234 t~~d~~~~l~~GadgV~VG 252 (310)
|++.+..+ .|||+|-||
T Consensus 166 T~e~~~~l--~gaD~VkVG 182 (368)
T d2cu0a1 166 NPKAVDDL--TFADAVKVG 182 (368)
T ss_dssp CHHHHTTC--TTSSEEEEC
T ss_pred CHHHHHhh--hcCcceeec
Confidence 99887543 599999998
|
| >d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Aerobic respiration control protein ArcA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.63 E-value=1.2 Score=32.32 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+++++.+++..++|++.+ .|-.+.++..+++++||+..+ .|.=+|......+.+.+
T Consensus 62 ~~~~~~~r~~~~~pii~l--t~~~~~~~~~~a~~~Ga~dyl-----~KP~~~~~L~~~v~~~l 117 (121)
T d1xhfa1 62 LLLARELREQANVALMFL--TGRDNEVDKILGLEIGADDYI-----TKPFNPRELTIRARNLL 117 (121)
T ss_dssp HHHHHHHHHHCCCEEEEE--ESCCSHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCcEEEE--ECCCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHH
Confidence 567777777778999865 666789999999999999986 55446666655555444
|
| >d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.37 E-value=0.045 Score=46.62 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=32.5
Q ss_pred HHHHHHcCCCEEEEccccc-cCCCHHHHHHHHHHHH-hccCC
Q 021609 238 AAMMMQLGCDGVFVGSGVF-KSGDPVKRAQAIVRAV-THYSD 277 (310)
Q Consensus 238 ~~~~l~~GadgV~VGsai~-~a~dp~~~a~~l~~~i-~~~~~ 277 (310)
..+++..|+|.++|||+|+ .++||...++.+.++. +.|++
T Consensus 220 p~eAi~~Gad~iVVGR~I~~aa~dp~~aak~~r~~~~~~~l~ 261 (267)
T d1dqwa_ 220 VDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLR 261 (267)
T ss_dssp HHHHHHTTCCEEEECGGGTSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCEEEECChhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 4455789999999999998 5789999999998884 55543
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=92.33 E-value=0.37 Score=40.44 Aligned_cols=85 Identities=15% Similarity=0.256 Sum_probs=59.2
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc-C-------Chhhh
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY-S-------DPEVL 281 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~-~-------~~~~~ 281 (310)
++.+..+++.+++|++. =.. |-++-++.++..+|||+|++--+++. + ...++|.+..++. + +++.+
T Consensus 97 ~~~l~~v~~~~~~PiLr-KDF-Iid~~QI~ear~~GADavLLI~~~L~---~-~~l~~l~~~a~~lgl~~LVEvh~~~El 170 (254)
T d1piia2 97 FNFLPIVSQIAPQPILC-KDF-IIDPYQIYLARYYQADACLLMLSVLD---D-DQYRQLAAVAHSLEMGVLTEVSNEEEQ 170 (254)
T ss_dssp TTHHHHHHHHCCSCEEE-ESC-CCSHHHHHHHHHTTCSEEEEETTTCC---H-HHHHHHHHHHHHTTCEEEEEECSHHHH
T ss_pred HHHHHHHHhccccccch-hcc-cCcHHHHHHHHhhccchhhhhHhhhc---c-cHHHHHHHHHHHHhhhHHHhhccHHHH
Confidence 45567788878999987 133 44899999999999999999988884 4 3344455544432 2 23333
Q ss_pred hhhhhhcccchhcccCccch
Q 021609 282 AEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~ 301 (310)
+.....|..+.|+|-+|++
T Consensus 171 -~~a~~~~a~iIGINnRnL~ 189 (254)
T d1piia2 171 -ERAIALGAKVVGINNRDLR 189 (254)
T ss_dssp -HHHHHTTCSEEEEESEETT
T ss_pred -HHHHhhcccccCccccchh
Confidence 2344578899999988875
|
| >d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Fructose-1,6-bisphosphate aldolase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=92.23 E-value=0.086 Score=44.69 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=22.8
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHHHcCCCE
Q 021609 220 GRLPVVHFAAGGVATPADAAMMMQLGCDG 248 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l~~Gadg 248 (310)
.++.|= |+|||+|.+++.+++.+|++.
T Consensus 203 ~~~gVK--ASGGIrt~~~a~~~i~~g~~~ 229 (256)
T d2a4aa1 203 NKIGLK--VSGGISDLNTASHYILLARRF 229 (256)
T ss_dssp TCCEEE--EESSCCSHHHHHHHHHHHHHH
T ss_pred CceeEE--ecCCCCCHHHHHHHHHHHHHh
Confidence 356676 799999999999999988773
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=92.13 E-value=0.06 Score=45.03 Aligned_cols=48 Identities=21% Similarity=0.336 Sum_probs=39.2
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
..++..+++. ..|+- ..|||++.+++.+++..|++-|+++|++++ +|.
T Consensus 63 ~~~~~~~~~~-~~pl~--~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~--~~~ 110 (241)
T d1qo2a_ 63 LPVLEKLSEF-AEHIQ--IGGGIRSLDYAEKLRKLGYRRQIVSSKVLE--DPS 110 (241)
T ss_dssp HHHHHHGGGG-GGGEE--EESSCCSHHHHHHHHHTTCCEEEECHHHHH--CTT
T ss_pred hhheehhccc-ccchh--hhhhhhhhhhhhhccccccceEecCccccc--Cch
Confidence 4455556554 47988 479999999999999999999999999997 553
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=92.03 E-value=2.4 Score=35.82 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=44.3
Q ss_pred CCEEEeCCCCCCCHHHHHHHH-HcC-CCEEE-EccccccCCC-HHHHHHHHHHHHhccCChhhh
Q 021609 222 LPVVHFAAGGVATPADAAMMM-QLG-CDGVF-VGSGVFKSGD-PVKRAQAIVRAVTHYSDPEVL 281 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l-~~G-adgV~-VGsai~~a~d-p~~~a~~l~~~i~~~~~~~~~ 281 (310)
+|+ .+||+ ++..+..++ ..| .|-++ +|.+++.+++ |..-+++++++++.+.+...+
T Consensus 208 ~Pv---~sGG~-~~~~vp~~~~~~G~~Dvil~aGGGi~gHP~G~~aGa~A~rqA~ea~~~g~~l 267 (283)
T d1ykwa1 208 LPV---PGGSD-SALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAKSIRQAWEAIEQGISI 267 (283)
T ss_dssp EEE---EECSB-CTTTHHHHHHHHCSSCSEECBSSSSSSCTTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred eee---ccCCc-chhhhHHHHHhcCCceEEEecCcccccCCCchHHHHHHHHHHHHHHHcCCCH
Confidence 677 48998 699999988 578 46554 8999999885 788889999999887765433
|
| >d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein KdpE, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.75 E-value=1.4 Score=31.87 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=42.0
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+++++++++....|++.+ .+-.+.++..++++.||+..+ .|.-++......+...++
T Consensus 60 ~e~~~~ir~~~~~piI~l--t~~~~~~~~~~a~~~Ga~dyl-----~KP~~~~~L~~~i~~~lr 116 (119)
T d1zh2a1 60 IEFIRDLRQWSAVPVIVL--SARSEESDKIAALDAGADDYL-----SKPFGIGELQARLRVALR 116 (119)
T ss_dssp HHHHHHHHTTCCCCEEEE--ESCCSHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHhccCCcEEEE--eccCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHHh
Confidence 677888887778999865 555688999999999999885 554456655555555554
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=91.70 E-value=1.8 Score=37.14 Aligned_cols=55 Identities=25% Similarity=0.485 Sum_probs=44.4
Q ss_pred CCEEEeCCCCCCCHHHHHHHH-HcCCC-EEEEccccccCCC-HHHHHHHHHHHHhccCChhh
Q 021609 222 LPVVHFAAGGVATPADAAMMM-QLGCD-GVFVGSGVFKSGD-PVKRAQAIVRAVTHYSDPEV 280 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l-~~Gad-gV~VGsai~~a~d-p~~~a~~l~~~i~~~~~~~~ 280 (310)
.|+ .+||+ ++..+..++ ..|-| .+.+|.+|+.+++ |..-+++++++++.+.+...
T Consensus 227 ~Pv---~sgG~-~~~~vp~~~~~~G~Dvil~~GGgi~gHP~G~aaGa~A~RqA~ea~~~g~~ 284 (307)
T d1geha1 227 FPT---SSGGL-HPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQGIP 284 (307)
T ss_dssp EEE---EESSC-CTTTHHHHHHHTCSSSEEECSHHHHSCTTCHHHHHHHHHHHHHHHTSSCC
T ss_pred ccc---cCCCC-cHHHHHHHHHHhCCcEEEEcCccccCCCCChHHHHHHHHHHHHHHHhCCC
Confidence 577 58999 699999988 57988 4567899998875 88889999999998776443
|
| >d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Probable two-component system transcriptional regulator Rv1626 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.68 E-value=0.64 Score=36.56 Aligned_cols=93 Identities=13% Similarity=0.005 Sum_probs=63.6
Q ss_pred CCcEEEecCCHHHHHHHH-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIPFVCGCRNLGEALRRI-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~~~v~~~t~~ea~~~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
+..++..+.+.++|.... +..+|+|.+.-... ....+++++.++
T Consensus 27 g~~vv~~a~~g~eal~~~~~~~pDlvllDi~mP-----------------------------------~~dG~e~~~~ir 71 (190)
T d1s8na_ 27 GYEIVGEAGDGQEAVELAELHKPDLVIMDVKMP-----------------------------------RRDGIDAASEIA 71 (190)
T ss_dssp TCEEEEEESSHHHHHHHHHHHCCSEEEEESSCS-----------------------------------SSCHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHhcCCCCEEEEecccc-----------------------------------CcchHHHHHHHH
Confidence 444545678888888865 45778776542211 012367788887
Q ss_pred hcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 218 QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 218 ~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+..++||+++ .+-.+.+++.+++++||++.+ .+.-+|......+...++
T Consensus 72 ~~~~~pIi~l--Ta~~~~~~~~~al~~Ga~~yl-----~KP~~~~~L~~~i~~~~~ 120 (190)
T d1s8na_ 72 SKRIAPIVVL--TAFSQRDLVERARDAGAMAYL-----VKPFSISDLIPAIELAVS 120 (190)
T ss_dssp HTTCSCEEEE--EEGGGHHHHHTTGGGSCEEEE-----EESCCHHHHHHHHHHHHH
T ss_pred hcCCCCEEEE--eCCCCHHHHHHHHHcCCCEec-----cCCCCHHHHHHHHHHHHH
Confidence 7778999865 555688999999999999997 565667766666655554
|
| >d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: DNA-binding response regulator MicA, N-terminal domain species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.67 E-value=1.6 Score=31.31 Aligned_cols=55 Identities=11% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRA 271 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~ 271 (310)
+++++++++..++|++.+ .+-.+.++..+++++||+..+ .+.-+|......+.+.
T Consensus 60 ~~~~~~i~~~~~~pvI~l--t~~~~~~~~~~a~~~Ga~d~l-----~KP~~~~~L~~~i~~~ 114 (117)
T d2a9pa1 60 LEVAKTIRKTSSVPILML--SAKDSEFDKVIGLELGADDYV-----TKPFSNRELQARVKAL 114 (117)
T ss_dssp HHHHHHHHTTCCCCEEEE--ESCCSHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCCEEEE--ecCCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHH
Confidence 677888887778999865 555688999999999999985 5544555554444433
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=91.26 E-value=0.45 Score=40.15 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHH------hhcCcceeeccccCcHHHHHHHHHcCCCEE-
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIK------QSVTIPVMAKARIGHFVEAQILEAIGIDYV- 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~------~~~~iPv~vk~~~~~~~~a~~~~~aGad~V- 118 (310)
..++.+.+.||+.| ++..+.+.. |+......+++.++. +..++++.+..+ ..+.++.++++|||.|
T Consensus 30 ~~~~~m~~~GAdiI-DIGaeSTrP----ga~~is~~eE~~Rl~pvi~~l~~~~~~iSIDT~--~~eVa~~al~~Ga~iIN 102 (264)
T d1ad1a_ 30 TRVKAMMDEGADII-DVGGVSTRP----GHEMITVEEELNRVLPVVEAIVGFDVKISVDTF--RSEVAEACLKLGVDIIN 102 (264)
T ss_dssp HHHHHHHHTTCSEE-EEESCCCST----TCCCCCHHHHHHHHHHHHHHHTTSSSEEEEECS--CHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHCCCCEE-EECCccCCC----CCCcCCHHHHHHhhhhHhhhhcccCcccchhhh--hHHHHHHHHhcCCcEee
Confidence 46888899999976 774222211 121222234444431 224677776665 3478899999999998
Q ss_pred EeCCCCCchhHHHHHHhcCC
Q 021609 119 DESEVLTPADEENHINKHNF 138 (310)
Q Consensus 119 i~~~~~~~~~~~~~i~~~~~ 138 (310)
.++......+..+.+.+++.
T Consensus 103 DVs~g~~d~~~~~~va~~~~ 122 (264)
T d1ad1a_ 103 DQWAGLYDHRMFQVVAKYDA 122 (264)
T ss_dssp ETTTTSSCTHHHHHHHHTTC
T ss_pred ccccccccccHHHHHhhcCc
Confidence 45555545556666655443
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.01 E-value=1.8 Score=35.88 Aligned_cols=87 Identities=15% Similarity=0.321 Sum_probs=61.1
Q ss_pred CcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc-C-------Chh
Q 021609 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY-S-------DPE 279 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~-~-------~~~ 279 (310)
..++.+..+++.+++||+. =.. |-++-++.++...|||+|++--+++. + ...++|.+..++. + .++
T Consensus 90 Gs~~dl~~v~~~~~~PiLr-KDF-Iid~~QI~ea~~~GADaiLLI~~~L~---~-~~l~~l~~~a~~lgl~~LvEvh~~~ 163 (247)
T d1a53a_ 90 GSYETLRKIASSVSIPILM-KDF-IVKESQIDDAYNLGADTVLLIVKILT---E-RELESLLEYARSYGMEPLIEINDEN 163 (247)
T ss_dssp CCHHHHHHHHHHCCSCEEE-ESC-CCSHHHHHHHHHHTCSEEEEEGGGSC---H-HHHHHHHHHHHTTTCCCEEEECSHH
T ss_pred cchHHHHHHHhccccceee-ccc-ccChHHHHHHHHhhcchhhhhhhhcc---H-HHHHHHHHHHHHHhhhHHhhcCCHH
Confidence 3466677788888999997 233 44899999999999999999988884 3 4455566555442 2 233
Q ss_pred hhhhhhhhcccchhcccCccch
Q 021609 280 VLAEVSCGLGEAMVGLNLSDHK 301 (310)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~ 301 (310)
.+. .....|-.+.|+|-++++
T Consensus 164 El~-~a~~~~a~iIGINnRnL~ 184 (247)
T d1a53a_ 164 DLD-IALRIGARFIGINSRDLE 184 (247)
T ss_dssp HHH-HHHHTTCSEEEEESBCTT
T ss_pred HHH-HHHhCCCCeEeeeccChh
Confidence 333 344578889999988774
|
| >d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: 2-methylisocitrate lyase species: Escherichia coli [TaxId: 562]
Probab=90.74 E-value=0.49 Score=40.47 Aligned_cols=120 Identities=17% Similarity=0.115 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCcEEEeccCC--cccccccCCCCCCCCHHHHHHHHhhc---Ccc-eeeccccC------c---HHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERV--PADIRSQGGVARMSDPQLIKEIKQSV---TIP-VMAKARIG------H---FVEAQIL 110 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~--~~~~~~~~G~~~~~~~~~i~~i~~~~---~iP-v~vk~~~~------~---~~~a~~~ 110 (310)
+.++.++++|+.++ .++.+ |+......|.......+.+.+++.+. .-| +++.-|.. . .+.++.+
T Consensus 97 ~~v~~~~~aGvagi-~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~~aY 175 (289)
T d1muma_ 97 RTVKSMIKAGAAGL-HIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAY 175 (289)
T ss_dssp HHHHHHHHHTCSEE-EEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEE-EecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccccCHHHHHHHHHHh
Confidence 57889999999997 77633 33222222332333446667765432 222 44433321 1 3567888
Q ss_pred HHcCCCEEEeCCCCCchhHHHHHHhcCCCCc-EEEe--cCCHHHHHHHHHhCCCEEEEc
Q 021609 111 EAIGIDYVDESEVLTPADEENHINKHNFRIP-FVCG--CRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 111 ~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~-~~v~--~~t~~ea~~~~~~Gad~V~v~ 166 (310)
.++|||.|......+..++.+..+....-+. ++.. ....-....+.+.|+.++...
T Consensus 176 ~eAGAD~vf~~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~~eL~~~Gv~~v~~~ 234 (289)
T d1muma_ 176 VEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVAMALYP 234 (289)
T ss_dssp HHTTCSEEEETTCCCHHHHHHHHHHHCSCBEEECCSSSSSCCCCHHHHHHTTCSEEEES
T ss_pred hhcCCcEEEecCCCCHHHHHHHHHhcCCCEEEeecCcCCCccchHHHHHHhccceEEec
Confidence 9999999975544455555555544221111 1111 111112455778899988753
|
| >d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein DctD, receiver domain species: Sinorhizobium meliloti [TaxId: 382]
Probab=90.44 E-value=0.27 Score=37.16 Aligned_cols=59 Identities=20% Similarity=0.128 Sum_probs=42.3
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
+++++++++. .++|||++ .|-.+.+++.+++++||+..+ .+.-++......+.+.++..
T Consensus 60 ~el~~~lr~~~~~~pvI~l--T~~~~~~~~~~a~~~Ga~dyl-----~KP~~~~~L~~~i~~~~~~~ 119 (140)
T d1qkka_ 60 LALFRKILALDPDLPMILV--TGHGDIPMAVQAIQDGAYDFI-----AKPFAADRLVQSARRAEEKR 119 (140)
T ss_dssp HHHHHHHHHHCTTSCEEEE--ECGGGHHHHHHHHHTTCCEEE-----ESSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcEEEE--ECCCCHHHHHHHHHcCCCEee-----cCCCCHHHHHHHHHHHHHHH
Confidence 6677777654 57999976 666689999999999999987 45445655555555555443
|
| >d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Escherichia coli [TaxId: 562]
Probab=90.12 E-value=2.5 Score=36.30 Aligned_cols=42 Identities=24% Similarity=0.432 Sum_probs=27.9
Q ss_pred CcHHHHHHHhhcCCCCEEEe-------------CCCCCCCHHH-----HHHHHHcCCCEEE
Q 021609 208 APYDLVMQTKQLGRLPVVHF-------------AAGGVATPAD-----AAMMMQLGCDGVF 250 (310)
Q Consensus 208 ~~~~~i~~i~~~~~iPVi~i-------------A~GGI~t~~d-----~~~~l~~GadgV~ 250 (310)
+.++.++.+++..++|+.+. ..|.+ +.++ +....++|||.++
T Consensus 250 ~yLDii~~~k~~~~~Pv~aYqVSGEYami~~aa~~g~~-d~~~~~~E~l~~~kRAGAd~Ii 309 (323)
T d1l6sa_ 250 AYLDIVRELRERTELPIGAYQVSGEYAMIKFAALAGAI-DEEKVVLESLGSIKRAGADLIF 309 (323)
T ss_dssp TCHHHHHHHHTTCSSCEEEEECHHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCSEEE
T ss_pred hhHHHHHHHHHhcCCCEEEEEccHHHHHHHHHHHcCCC-chHhHHHHHHHHHHhcCCCEEE
Confidence 34778888888888898754 24555 4433 3334478999987
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=89.98 E-value=3.3 Score=34.06 Aligned_cols=173 Identities=16% Similarity=0.165 Sum_probs=104.0
Q ss_pred HHHHHHHHcCCcEE-EeccCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEE-eCC-
Q 021609 46 EQARVAEEAGACAV-MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVD-ESE- 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i-~~L~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi-~~~- 122 (310)
++|+.++++||++| +.+.| |.|. -..+++..+++.+++|+=+-... ..+..+.+.+.--+.|. .++
T Consensus 28 ~~a~~~~~~GadgITvH~R~---DrRH-------I~~~Dv~~l~~~~~~~lNlE~a~-~~e~i~ia~~~kP~qvtLVPe~ 96 (242)
T d1m5wa_ 28 QAAFIAEQAGADGITVHLRE---DRRH-------ITDRDVRILRQTLDTRMNLEMAV-TEEMLAIAVETKPHFCCLVPEK 96 (242)
T ss_dssp HHHHHHHTTTCSEEEEECCT---TCSS-------SCHHHHHHHHHHCSSEEEEEECS-SHHHHHHHHHHCCSEEEECCCC
T ss_pred HHHHHHHHcCCCeEEeCCCC---Cccc-------cchHHHHHHHHHhhccccccccc-chhHHHHHHHhccceEEEeecC
Confidence 78889999999999 67742 2222 12678888998888886654432 34677888888899884 332
Q ss_pred --------CCC-------chhHHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccc
Q 021609 123 --------VLT-------PADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGD 187 (310)
Q Consensus 123 --------~~~-------~~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~ 187 (310)
++. ..+.++.+++.+..+..+++. +.+....+.+.|+|.|=+|...| +.+
T Consensus 97 r~elTTegGld~~~~~~~L~~~i~~l~~~girvSLFiDp-d~~~i~~a~~lGad~IElhTG~Y----a~a---------- 161 (242)
T d1m5wa_ 97 RQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDA-DEEQIKAAAEVGAPFIEIHTGCY----ADA---------- 161 (242)
T ss_dssp SSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECS-CHHHHHHHHHTTCSEEEEECHHH----HHC----------
T ss_pred ccccCcCCceeehhhHHHHHHHHHHHHhcCCeEEEEecc-chhhHHHHhhcCcceeeeecccc----ccc----------
Confidence 121 123344444445556677774 77788888899999998873211 100
Q ss_pred eEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHc-CCCEEEEcccccc
Q 021609 188 IRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFK 257 (310)
Q Consensus 188 ~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~-GadgV~VGsai~~ 257 (310)
...... .... ..+....+......+-|= |+=|. +.+++..+... +.+=|-+|-+|..
T Consensus 162 ------~~~~~~---~~el-~~i~~aa~~A~~lGL~Vn--AGHgL-n~~Nl~~i~~ip~i~EvsIGHaiI~ 219 (242)
T d1m5wa_ 162 ------KTDAEQ---AQEL-ARIAKAATFAASLGLKVN--AGHGL-TYHNVKAIAAIPEMHELNIGHAIIG 219 (242)
T ss_dssp ------CSHHHH---HHHH-HHHHHHHHHHHHTTCEEE--EESSC-CTTTHHHHHTCTTEEEEEECHHHHH
T ss_pred ------ccchhh---HHHH-HHHHHHHHHHHhcCCccc--CCCCc-CccchHHHhcCCCCeEEeccHHHHH
Confidence 000000 0000 001111112222456676 67788 68999876654 6889999988874
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=89.81 E-value=0.061 Score=48.57 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=39.0
Q ss_pred HhhcCCCCEEEeCCCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHHHHHHHhccC
Q 021609 216 TKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYS 276 (310)
Q Consensus 216 i~~~~~iPVi~iA~GGI~t~~d~~~~l-~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~ 276 (310)
+++.+++||+ +.|||.+..++.+.+ +-+||.|.+|++++. ||. |.+.++++.
T Consensus 312 ik~~~~~PVi--~~G~i~~~~~~~~~i~~~~aDlV~~gR~lia--DP~-----l~~K~~~G~ 364 (399)
T d1oyaa_ 312 VYSIWKGPVI--RAGNFALHPEVVREEVKDKRTLIGYGRFFIS--NPD-----LVDRLEKGL 364 (399)
T ss_dssp HHHHCCSCEE--EESSCTTCHHHHHHHTTSTTEEEECCHHHHH--CTT-----HHHHHHHTC
T ss_pred HHHHhCCCEE--EECCCCChHHHHHHHHcCCCeEhHHHHHHHH--Ccc-----HHHHHHcCC
Confidence 5566789998 569998777766666 456999999999998 675 555555554
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.77 E-value=1.2 Score=39.59 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=64.0
Q ss_pred CHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC------CCC------chhHHHHHHh--cCCCCcEEEe
Q 021609 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE------VLT------PADEENHINK--HNFRIPFVCG 145 (310)
Q Consensus 80 ~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~------~~~------~~~~~~~i~~--~~~~i~~~v~ 145 (310)
+.+.++.++...+.|+++|... ..+++..+...|++.++.+. +.. ..++...+.. .+.++++++|
T Consensus 234 ~~~~i~~i~~~~~~~~i~kgi~-~~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viad 312 (414)
T d1kbia1 234 TWKDIEELKKKTKLPIVIKGVQ-RTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVD 312 (414)
T ss_dssp CHHHHHHHHHHCSSCEEEEEEC-SHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEE
T ss_pred CHHHHHHHhccCCceEEeeccc-hhHHHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEec
Confidence 3478899999999999998653 45788899999999996322 111 1233344432 2345888887
Q ss_pred --cCCHHHHHHHHHhCCCEEEEcC
Q 021609 146 --CRNLGEALRRIREGAAMIRTKG 167 (310)
Q Consensus 146 --~~t~~ea~~~~~~Gad~V~v~g 167 (310)
+++.-|+.++..+||+.|.+..
T Consensus 313 GGIR~G~DVaKALALGAdaVgigr 336 (414)
T d1kbia1 313 GGVRRGTDVLKALCLGAKGVGLGR 336 (414)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEECH
T ss_pred CCcCcHHHHHHHHHcCCCEEEEcH
Confidence 8999999999999999999853
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=89.69 E-value=3.7 Score=34.08 Aligned_cols=196 Identities=14% Similarity=0.143 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC--CCCHHHHHHHHhhcCcceeecc-ccC-------cHHHHHHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVAR--MSDPQLIKEIKQSVTIPVMAKA-RIG-------HFVEAQILE 111 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~--~~~~~~i~~i~~~~~iPv~vk~-~~~-------~~~~a~~~~ 111 (310)
..+++..+.+.++|++.+ -+| ..+|+.. ....+.++++.+..+.|+.+.. ..+ +..+.+.+.
T Consensus 31 s~~~~~l~~li~aGvdv~-RiN-------~SHg~~e~~~~~i~~iR~~~~~~g~~v~i~~d~~gp~~~t~kd~~di~~a~ 102 (258)
T d1pkla2 31 TQSVEALKGLIQSGMSVA-RMN-------FSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGV 102 (258)
T ss_dssp GCSHHHHHHHHHHTEEEE-EEE-------TTSSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCCCCSSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCEE-EEE-------CCCCCHHHHHHHHHHHHHHHHHhCCCccccccccccccccccHHHHHHHHH
Confidence 456789999999999965 443 1122210 0113455555556666655521 112 245677888
Q ss_pred HcCCCEEEeCCCCCc---hhHHHHHHhcCCCCcEEEecCCHHHHHHHHH--hCCCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 112 AIGIDYVDESEVLTP---ADEENHINKHNFRIPFVCGCRNLGEALRRIR--EGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 112 ~aGad~Vi~~~~~~~---~~~~~~i~~~~~~i~~~v~~~t~~ea~~~~~--~Gad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
+.|+|.+-.+..-+. .++.+++.+.+..+.+++-+.+.+-.....+ .-+|.|.+. ++ ++.
T Consensus 103 ~~~vD~ialSFVrs~~Dv~~ir~~l~~~~~~~~iiaKIE~~~al~nldeI~~~sDgImIa-RG---DLg----------- 167 (258)
T d1pkla2 103 EQGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVA-RG---DLG----------- 167 (258)
T ss_dssp HHTCSEEEETTCCSHHHHHHHHHHHCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEEEEC-HH---HHT-----------
T ss_pred hcCCCeEEEeCCCCHHHHHHHHHHHHHcCCCCceEEEecCchhhhhhhhHHhhCCeeeEe-ch---hhh-----------
Confidence 999999965544333 3455666555566777777777644433321 235666653 21 100
Q ss_pred ceEeecccChhHHHHhhhccCC-cHHHHHHHhhcCCCCEEEe-------CCCCCCC---HHHHHHHHHcCCCEEEEcccc
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAA-PYDLVMQTKQLGRLPVVHF-------AAGGVAT---PADAAMMMQLGCDGVFVGSGV 255 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~-~~~~i~~i~~~~~iPVi~i-------A~GGI~t---~~d~~~~l~~GadgV~VGsai 255 (310)
..++.+. .+. ....++. +.....|+++. ....+-| ..|+.-++..|+|++++..-=
T Consensus 168 -----~ei~~e~-------vp~~Qk~Ii~~-~~~~~kpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~imLs~ET 234 (258)
T d1pkla2 168 -----VEIPAEK-------VVVAQKILISK-CNVAGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGET 234 (258)
T ss_dssp -----TTSCHHH-------HHHHHHHHHHH-HHHHTCCEEECSSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEESHHH
T ss_pred -----hhcchhh-------hhhHHHHHHHH-HHHcCCCEEEEeceeHhhccCCCCCHHHHHHHHHHHHhCCCEEEEcccc
Confidence 0000000 000 1122322 23346799852 1123333 357777778899999997444
Q ss_pred ccCCCHHHHHHHHHHHHh
Q 021609 256 FKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 256 ~~a~dp~~~a~~l~~~i~ 273 (310)
..-..|..+.+.+.+.+.
T Consensus 235 a~G~~P~~~V~~l~~i~~ 252 (258)
T d1pkla2 235 AKGKYPNEVVQYMARICL 252 (258)
T ss_dssp HTCSCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 444578888776655544
|
| >d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Phosphoenolpyruvate mutase/Isocitrate lyase-like domain: Phosphoenolpyruvate mutase species: Blue mussel (Mytilus edulis) [TaxId: 6550]
Probab=89.40 E-value=1.5 Score=36.87 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=66.4
Q ss_pred HHHHHHhcCCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCC
Q 021609 129 EENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAA 208 (310)
Q Consensus 129 ~~~~i~~~~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~ 208 (310)
+.++++ ..++.+++.+++.-.|+.+.++|.+.+.+.++.-.. ++ =+|+. +++ ....
T Consensus 8 lr~l~~--~~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aa----------s~-----G~pD~---~~l----t~~e 63 (275)
T d1s2wa_ 8 LKQMLN--SKDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSA----------QL-----GVRDS---NEA----SWTQ 63 (275)
T ss_dssp HHHHHH--SSSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHH----------TC---------------------CHH
T ss_pred HHHHHh--CCCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHH----------Hc-----CCCCC---Ccc----chhh
Confidence 444443 346778889999999999999999999887642100 00 00100 000 0111
Q ss_pred cHHHHHHHhhcCCCCEEEeCCCCCCCHHHHH----HHHHcCCCEEEEcccc
Q 021609 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAA----MMMQLGCDGVFVGSGV 255 (310)
Q Consensus 209 ~~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~----~~l~~GadgV~VGsai 255 (310)
-.+.++.+.+.+++||++-+..|-.++.++. ++.++|+.|+.+=-..
T Consensus 64 ~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~ 114 (275)
T d1s2wa_ 64 VVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKL 114 (275)
T ss_dssp HHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBC
T ss_pred HHHHHHhhhcccCCceeEecccccccchHHHHHHHHHHHhccceeEeeccc
Confidence 1456777778889999997788888887654 5557899999986543
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=89.11 E-value=1.3 Score=32.11 Aligned_cols=57 Identities=25% Similarity=0.181 Sum_probs=38.9
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+++++++++. .++|++++ .|-.+.++..+++++|++..+ .|.-++......+.+.++
T Consensus 63 ~el~~~l~~~~~~~piI~~--t~~~~~~~~~~a~~~Ga~dyl-----~KP~~~~eL~~~i~~~l~ 120 (123)
T d1krwa_ 63 LALLKQIKQRHPMLPVIIM--TAHSDLDAAVSAYQQGAFDYL-----PKPFDIDEAVALVERAIS 120 (123)
T ss_dssp HHHHHHHHHHSSSCCEEES--CCCSCHHHHHHHHHHTEEEEC-----SSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeEEEE--ecCCCHHHHHHHHHcCCCeEE-----eCcCCHHHHHHHHHHHHH
Confidence 6667777553 57999854 777789999999999998875 443344444444444443
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=88.95 E-value=5.5 Score=33.08 Aligned_cols=103 Identities=7% Similarity=0.038 Sum_probs=53.0
Q ss_pred cccCCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCH----HHHHHHHhhcCcceee-ccccCc-------HHH
Q 021609 39 IMDVVTPEQARVAEEAGACAVMALERVPADIRSQGGVARMSDP----QLIKEIKQSVTIPVMA-KARIGH-------FVE 106 (310)
Q Consensus 39 i~~~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~----~~i~~i~~~~~iPv~v-k~~~~~-------~~~ 106 (310)
+...-|+..|+.+.++|.|.++.=+....... +.-+...-+. ...+.+++...-++++ ...++. ...
T Consensus 19 ~lTayD~~~A~~~~~agvDiiLVGDSlgmv~~-G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~~~~~a~~~ 97 (262)
T d1m3ua_ 19 TITAYDYSFAKLFADEGLNVMLVGDSLGMTVQ-GHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFEN 97 (262)
T ss_dssp EEECCSHHHHHHHHHHTCCEEEECTTHHHHTT-CCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHH
T ss_pred EEEcCCHHHHHHHHHCCCCEEEEcCcHHhccc-CCCCcceechHhHHHHHHHHHhccccceeEeccccccchhhHHHHHH
Confidence 34556778999999999997621011000000 0011111122 3455666665555444 333321 233
Q ss_pred HHHHHHcCCCEEEeCCCCCchhHHHHHHhcCCCCcEEE
Q 021609 107 AQILEAIGIDYVDESEVLTPADEENHINKHNFRIPFVC 144 (310)
Q Consensus 107 a~~~~~aGad~Vi~~~~~~~~~~~~~i~~~~~~i~~~v 144 (310)
+..+.++|||.|-........+.++.+.+ .+++++.
T Consensus 98 a~~l~~~GAdaVKlEgg~~~~~~I~~L~~--~gIPV~g 133 (262)
T d1m3ua_ 98 AATVMRAGANMVKIEGGEWLVETVQMLTE--RAVPVCG 133 (262)
T ss_dssp HHHHHHTTCSEEECCCSGGGHHHHHHHHH--TTCCEEE
T ss_pred HHHHHhcCCcEEEeccchhHHHHHHHHHH--cCCeEEe
Confidence 45667799999954444444556665544 3455543
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.80 E-value=1.1 Score=38.62 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=61.5
Q ss_pred CHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEEEeCC--------CCCchhHHHHHHhcCCCCcEEEe--cCCH
Q 021609 80 DPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDESE--------VLTPADEENHINKHNFRIPFVCG--CRNL 149 (310)
Q Consensus 80 ~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi~~~--------~~~~~~~~~~i~~~~~~i~~~v~--~~t~ 149 (310)
..+.++.+++....|++++...+ .+++..+.+.|+|.+..++ ..+..+....+.. ..++++++| +++.
T Consensus 210 ~~~~i~~l~~~~~~~i~~kgv~~-~~~~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~-~~~~~viasGGIR~G 287 (353)
T d1p4ca_ 210 NWEALRWLRDLWPHKLLVKGLLS-AEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVA-KTGKPVLIDSGFRRG 287 (353)
T ss_dssp CHHHHHHHHHHCCSEEEEEEECC-HHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHH-HHCSCEEECSSCCSH
T ss_pred CHHHHHHHHhccccchhhhcchh-hhhHHHHHhcCCchhhhcccccccccccccchhcccchhc-ccccceeecCCcCch
Confidence 45678888888899999987644 5788999999999986321 1222333322222 235677776 8999
Q ss_pred HHHHHHHHhCCCEEEEc
Q 021609 150 GEALRRIREGAAMIRTK 166 (310)
Q Consensus 150 ~ea~~~~~~Gad~V~v~ 166 (310)
-|+.++..+|||.|.+.
T Consensus 288 ~Dv~KALaLGAd~vgig 304 (353)
T d1p4ca_ 288 SDIVKALALGAEAVLLG 304 (353)
T ss_dssp HHHHHHHHTTCSCEEES
T ss_pred HHHHHHHHcCCCEEEEc
Confidence 99999999999999875
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=88.64 E-value=0.58 Score=36.70 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=33.8
Q ss_pred HHHHHhhc--CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 212 LVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 212 ~i~~i~~~--~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
+++.+++. .++||+ .||+--.+|...+.++|+|.+. |.. .++...+..+++.++.
T Consensus 108 l~~~L~~~g~~~v~Vi---vGG~ip~~d~~~l~~~Gv~~iF-~pg----t~~~e~a~~~~~~~~~ 164 (168)
T d7reqa2 108 LRKELDKLGRPDILIT---VGGVIPEQDFDELRKDGAVEIY-TPG----TVIPESAISLVKKLRA 164 (168)
T ss_dssp HHHHHHHTTCTTSEEE---EEESCCGGGHHHHHHHTEEEEE-CTT----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCeEEE---EeCCCCHHHHHHHHhCCCCEEE-CcC----CCHHHHHHHHHHHHHH
Confidence 44455543 357776 3776568999888899999863 211 2344556556666554
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=88.56 E-value=1.2 Score=33.46 Aligned_cols=46 Identities=13% Similarity=0.290 Sum_probs=27.2
Q ss_pred CCCCEEEeCCCCCCC-----HHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 220 GRLPVVHFAAGGVAT-----PADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t-----~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.++|++ ..|++.+ +++..++.+.|+|+|.= ...+|......+.+.+
T Consensus 84 ~~i~ii--vGG~~~~~~~~~~~~~~~l~~~Gv~~if~-----~~t~~~~~~~~l~~~l 134 (137)
T d1ccwa_ 84 EGILLY--VGGNIVVGKQHWPDVEKRFKDMGYDRVYA-----PGTPPEVGIADLKKDL 134 (137)
T ss_dssp TTCEEE--EEESCSSSSCCHHHHHHHHHHTTCSEECC-----TTCCHHHHHHHHHHHH
T ss_pred CCCEEE--EeCCcCCCccccHHHHHHHHHcCCCEEEC-----CCCCHHHHHHHHHHHh
Confidence 468887 4565533 34555666889998841 1235556666565554
|
| >d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=87.95 E-value=2.4 Score=31.20 Aligned_cols=57 Identities=18% Similarity=0.155 Sum_probs=40.2
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+++++.+++. .++|||++ .|-.+.+++.+++++||+..+ .+.-++......+.+.++
T Consensus 60 ~e~~~~lr~~~~~~piI~l--T~~~~~~~~~~a~~~Ga~dyl-----~KP~~~~~L~~~i~~~l~ 117 (137)
T d1ny5a1 60 LEILKWIKERSPETEVIVI--TGHGTIKTAVEAMKMGAYDFL-----TKPCMLEEIELTINKAIE 117 (137)
T ss_dssp HHHHHHHHHHCTTSEEEEE--EETTCHHHHHHHHTTTCCEEE-----EESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEE--ECCCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHHH
Confidence 5667777654 57999865 556789999999999999987 454456555555555554
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.93 E-value=5.7 Score=33.47 Aligned_cols=52 Identities=31% Similarity=0.502 Sum_probs=41.5
Q ss_pred CCEEEeCCCCCCCHHHHHHHH-HcCCCE-EEEccccccCCC-HHHHHHHHHHHHhccCC
Q 021609 222 LPVVHFAAGGVATPADAAMMM-QLGCDG-VFVGSGVFKSGD-PVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 222 iPVi~iA~GGI~t~~d~~~~l-~~Gadg-V~VGsai~~a~d-p~~~a~~l~~~i~~~~~ 277 (310)
+|+ .+||+ ++..+.++. ..|-|- +.+|.+++.+++ |..-+++++++++.+.+
T Consensus 211 ~Pv---~sGG~-~~~~vp~~~~~~G~D~il~~GGgi~gHP~G~~aGa~A~RqA~ea~~~ 265 (291)
T d2d69a1 211 FPV---ASGGL-HPGLMPELIRLFGKDLVIQAGGGVMGHPDGPRAGAKALRDAIDAAIE 265 (291)
T ss_dssp EEE---EESSC-CGGGHHHHHHHHCSCCEEECHHHHHTCTTCHHHHHHHHHHHHHHHHH
T ss_pred eec---ccccc-chhhhHHHHHHcCCceEEEcCccccCCCCchHHHHHHHHHHHHHHHh
Confidence 666 58999 699999988 468885 457899999875 77788999998886554
|
| >d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoP receiver domain species: Escherichia coli [TaxId: 562]
Probab=87.90 E-value=3.4 Score=29.53 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=39.2
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+++++++++. .++|++++ .+-.+.++..+++++||++.+ .|.-++......+.+.+
T Consensus 60 ~e~~~~i~~~~~~~pvi~l--t~~~~~~~~~~a~~~Ga~~yl-----~KP~~~~~L~~~v~~~l 116 (119)
T d2pl1a1 60 LSLIRRWRSNDVSLPILVL--TARESWQDKVEVLSAGADDYV-----TKPFHIEEVMARMQALM 116 (119)
T ss_dssp HHHHHHHHHTTCCSCEEEE--ESCCCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccceEee--eccCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHH
Confidence 6677777664 47899865 566689999999999999986 55445555444444333
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.68 E-value=2 Score=35.63 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHcCCcEEEeccCCcccccccCCCCC--CCCHHHHHHHHhhcCcceeec--ccc---C--cHHHHHHHHH
Q 021609 42 VVTPEQARVAEEAGACAVMALERVPADIRSQGGVAR--MSDPQLIKEIKQSVTIPVMAK--ARI---G--HFVEAQILEA 112 (310)
Q Consensus 42 ~~~~~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~--~~~~~~i~~i~~~~~iPv~vk--~~~---~--~~~~a~~~~~ 112 (310)
..+++..+.+.++|++.+ -|| ..+|+.. ....+.++++.+..+.|+.+. ... . +.++...+.+
T Consensus 14 s~~~~~l~~li~aGvdv~-RlN-------~SHg~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~i~~a~~ 85 (246)
T d1e0ta2 14 TESEEMLAKMLDAGMNVM-RLN-------FSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQDLIFGCE 85 (246)
T ss_dssp GCSHHHHHHHHHHTEEEE-EEE-------TTSSCHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCEE-EEE-------CCCCCHHHHHHHHHHHHHHHHHcCCCCcccccccccccccCcchhhhHHHH
Confidence 456789999999999865 444 1112210 011345555555566665553 211 1 2456677889
Q ss_pred cCCCEEEeCCCCCc---hhHHHHHHhcC-CCCcEEEecCCHHHHHHHHH--hCCCEEEEcCCCCCcchHHHHHHHHhhcc
Q 021609 113 IGIDYVDESEVLTP---ADEENHINKHN-FRIPFVCGCRNLGEALRRIR--EGAAMIRTKGEAGTGNIIEAVRHVRSVMG 186 (310)
Q Consensus 113 aGad~Vi~~~~~~~---~~~~~~i~~~~-~~i~~~v~~~t~~ea~~~~~--~Gad~V~v~g~~~~~~~~~~~~~~r~~~~ 186 (310)
.|+|+|-.+..-+. .++.+.++.++ .++.+++-+.+.+-...+.+ .-+|.|.+. ++ ++. .
T Consensus 86 ~~vD~ialSFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi~~sDgImIa-RG---DLg------~---- 151 (246)
T d1e0ta2 86 QGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVA-RG---DLG------V---- 151 (246)
T ss_dssp HTCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEE-HH---HHH------H----
T ss_pred cCCCEEEEcCCCCHHHHHHHHHHHHHhCCCCceEEEEecchhhhhchHHHHhhcceEEEE-cc---chh------h----
Confidence 99999965544333 34455665544 34677777777644333322 235666653 21 110 0
Q ss_pred ceEeecccChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEeCCCCC---------CC---HHHHHHHHHcCCCEEEEccc
Q 021609 187 DIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGV---------AT---PADAAMMMQLGCDGVFVGSG 254 (310)
Q Consensus 187 ~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~iA~GGI---------~t---~~d~~~~l~~GadgV~VGsa 254 (310)
.++.+. .+.....+-+.+.....|+++ +.-+ -| ..|+.-++..|+|++++..-
T Consensus 152 ------ei~~e~-------vp~~Qk~ii~~~~~~~kpvi~--ATq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~vmLs~E 216 (246)
T d1e0ta2 152 ------EIPVEE-------VIFAQKMMIEKCIRARKVVIT--ATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGE 216 (246)
T ss_dssp ------HSCHHH-------HHHHHHHHHHHHHHHTCEEEE--ECC---------CCCHHHHHHHHHHHHHTCSEEEECCC
T ss_pred ------hCCHHH-------HHHHHHHHHHHHHHhCCCEEE--ehhhhhhhhcCCCCchHHHHHHHHHHHhCCcEEEEccc
Confidence 000000 011112222223334678874 2333 12 35777778889999999744
Q ss_pred cccCCCHHHHHHHHHHHHh
Q 021609 255 VFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 255 i~~a~dp~~~a~~l~~~i~ 273 (310)
=..-..|..+.+.+.+...
T Consensus 217 Ta~G~~P~~~v~~l~~i~~ 235 (246)
T d1e0ta2 217 SAKGKYPLEAVSIMATICE 235 (246)
T ss_dssp ------CHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHH
Confidence 4443578777775555443
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=87.52 E-value=1.4 Score=31.98 Aligned_cols=59 Identities=22% Similarity=0.192 Sum_probs=43.1
Q ss_pred cHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 209 ~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
.+++++++++. .++|++.+ .|-.+.+...+++++||+..+ .|.-+|....+.+.+++++
T Consensus 62 G~e~~~~lr~~~~~~~iI~l--t~~~~~~~~~~a~~~Ga~~yl-----~KP~~~~~L~~~i~~a~e~ 121 (123)
T d1dbwa_ 62 GVELLRNLGDLKINIPSIVI--TGHGDVPMAVEAMKAGAVDFI-----EKPFEDTVIIEAIERASEH 121 (123)
T ss_dssp HHHHHHHHHHTTCCCCEEEE--ECTTCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHHTT
T ss_pred chHHHHHHHhcCCCCeEEEE--EeeCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHHHh
Confidence 36777777764 57899865 666789999999999999986 4544666666666665543
|
| >d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]
Probab=87.29 E-value=0.61 Score=35.37 Aligned_cols=62 Identities=15% Similarity=0.222 Sum_probs=44.7
Q ss_pred cHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhccCC
Q 021609 209 PYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHYSD 277 (310)
Q Consensus 209 ~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~~~ 277 (310)
.+++++++++. .++||+++ .+-.+.++..+++++|+++.+ .|.-++....+.+.+.++.|.+
T Consensus 77 G~el~~~ir~~~~~~~ipiI~l--T~~~~~~~~~~~~~~Ga~~~l-----~KP~~~~~L~~~i~~~l~~~~~ 141 (149)
T d1k66a_ 77 GREVLQEIKQDEVLKKIPVVIM--TTSSNPKDIEICYSYSISSYI-----VKPLEIDRLTETVQTFIKYWLD 141 (149)
T ss_dssp HHHHHHHHTTSTTGGGSCEEEE--ESCCCHHHHHHHHHTTCSEEE-----ECCSSHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHhccccCCCeEEEE--eCCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHHHHHhc
Confidence 36778888754 36899865 445689999999999999986 4544566666667777766544
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=86.95 E-value=4.3 Score=29.67 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=61.7
Q ss_pred CCcEEEecCCHHHHHHHH-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHh
Q 021609 139 RIPFVCGCRNLGEALRRI-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTK 217 (310)
Q Consensus 139 ~i~~~v~~~t~~ea~~~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~ 217 (310)
+...+..+.+.+++.... +..+|.+.+.-.. | ....++++++++
T Consensus 27 ~~~~v~~a~~~~~al~~~~~~~~DlvllD~~m----------------------P-------------~~~G~el~~~ir 71 (138)
T d1a04a2 27 DITVVGEASNGEQGIELAESLDPDLILLDLNM----------------------P-------------GMNGLETLDKLR 71 (138)
T ss_dssp TEEEEEEESSHHHHHHHHHHHCCSEEEEETTS----------------------T-------------TSCHHHHHHHHH
T ss_pred CcEEEEEECCHHHHHHHHHhcCCCEEEEecCC----------------------C-------------CCCHHHHHHHHH
Confidence 345555678888877754 4467777654211 0 122377788887
Q ss_pred hc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 218 QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 218 ~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+. .+.|++++ .+-.+.+++.+++++||++.+ .|.-+|....+.+.+.+.
T Consensus 72 ~~~~~~~vivl--t~~~~~~~~~~a~~~Ga~~yl-----~Kp~~~~~L~~~i~~v~~ 121 (138)
T d1a04a2 72 EKSLSGRIVVF--SVSNHEEDVVTALKRGADGYL-----LKDMEPEDLLKALHQAAA 121 (138)
T ss_dssp HSCCCSEEEEE--ECCCCHHHHHHHHHTTCSEEE-----ETTCCHHHHHHHHHHHHH
T ss_pred hhCCCCCEEEE--EEECCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHHC
Confidence 64 46888865 455689999999999999986 665567666665655554
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=86.90 E-value=3.2 Score=34.69 Aligned_cols=81 Identities=12% Similarity=0.151 Sum_probs=58.9
Q ss_pred CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 137 ~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
..++.+++++.+.+.+..+.+.|++++.+..+. ...+++++.+
T Consensus 101 ~~~i~~~~s~fd~~s~~~~~~~~~~~~KIaS~d-------------------------------------~~n~~Li~~i 143 (280)
T d2zdra2 101 SKGMIFISTPFSRAAALRLQRMDIPAYKIGSGE-------------------------------------CNNYPLIKLV 143 (280)
T ss_dssp HTTCEEEEEECSHHHHHHHHHHTCSCEEECGGG-------------------------------------TTCHHHHHHH
T ss_pred hcCCccccccchhhcccccccccccceeccchh-------------------------------------ccccHhhhhh
Confidence 367889999999988888999999999886321 2346678888
Q ss_pred hhcCCCCEEEeCCCCCCCHHHHHHHHH----cCCCEEEE-cccccc
Q 021609 217 KQLGRLPVVHFAAGGVATPADAAMMMQ----LGCDGVFV-GSGVFK 257 (310)
Q Consensus 217 ~~~~~iPVi~iA~GGI~t~~d~~~~l~----~GadgV~V-Gsai~~ 257 (310)
.+ .+.||++ ..|| .+.+++.++.. .+.+-+++ +..-|.
T Consensus 144 ~k-~~kpiii-StG~-s~~~EI~~av~~~~~~~~~~~llhc~s~YP 186 (280)
T d2zdra2 144 AS-FGKPIIL-STGM-NSIESIKKSVEIIREAGVPYALLHCTNIYP 186 (280)
T ss_dssp HT-TCSCEEE-ECTT-CCHHHHHHHHHHHHHHTCCEEEEECCCCSS
T ss_pred hh-ccCceee-cccc-cchhHhhhhhhhhhhccccceEEEeeccCc
Confidence 76 5789984 4555 68888888775 47775554 666664
|
| >d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=86.51 E-value=3 Score=35.22 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=49.7
Q ss_pred CCCCcEEEecCCHHHHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHH
Q 021609 137 NFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQT 216 (310)
Q Consensus 137 ~~~i~~~v~~~t~~ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i 216 (310)
..++.+++++.+.+.+..+.+.|++++.+..+. ...+++++.+
T Consensus 99 ~~gi~~~~s~fd~~s~~~l~~l~~~~iKIaS~d-------------------------------------~~n~~Li~~i 141 (295)
T d1vlia2 99 EKQVIFLSTVCDEGSADLLQSTSPSAFKIASYE-------------------------------------INHLPLLKYV 141 (295)
T ss_dssp HTTCEEECBCCSHHHHHHHHTTCCSCEEECGGG-------------------------------------TTCHHHHHHH
T ss_pred hcccceeeecccceeeeeecccCcceeEecccc-------------------------------------cccHHHHHHH
Confidence 467889999999988888889999998886421 2346678888
Q ss_pred hhcCCCCEEEeCCCCCCCHHHHHHHHH
Q 021609 217 KQLGRLPVVHFAAGGVATPADAAMMMQ 243 (310)
Q Consensus 217 ~~~~~iPVi~iA~GGI~t~~d~~~~l~ 243 (310)
.+ ...|+++ ..||- +.+++.++..
T Consensus 142 ~k-~~kpvii-stG~~-~~~ei~~~~~ 165 (295)
T d1vlia2 142 AR-LNRPMIF-STAGA-EISDVHEAWR 165 (295)
T ss_dssp HT-TCSCEEE-ECTTC-CHHHHHHHHH
T ss_pred Hh-cCCchhe-echhh-hhhhHHHHHh
Confidence 77 4679985 46664 7888776663
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=86.12 E-value=7.3 Score=33.52 Aligned_cols=178 Identities=14% Similarity=0.118 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCcEEEec--cCCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE-EeCC
Q 021609 46 EQARVAEEAGACAVMAL--ERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV-DESE 122 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L--~~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V-i~~~ 122 (310)
+.|+.+.+.|++.+..- .|. +....+.|.. ..-++.++++++.+++|++-... ...+++.+.+. +|.+ +.+.
T Consensus 112 ~~A~~lke~g~~~~r~g~fKpR-tsp~sf~g~g-~~gL~~l~~~k~~~glpvvTdV~--~~~~~~~~~e~-~DilQI~A~ 186 (338)
T d1vr6a1 112 ETAHFLSELGVKVLRGGAYKPR-TSPYSFQGLG-EKGLEYLREAADKYGMYVVTEAL--GEDDLPKVAEY-ADIIQIGAR 186 (338)
T ss_dssp HHHHHHHHTTCCEEECBSCCCC-CSTTSCCCCT-HHHHHHHHHHHHHHTCEEEEECS--SGGGHHHHHHH-CSEEEECGG
T ss_pred HHHHHHHHhCccccccceeccc-ccccccccch-HHHHHHHHHHHhhcCceeEEecc--chhhhhhhhce-eeeEEechh
Confidence 56888888999866321 111 0111122221 12257888889999999986543 22345445444 8888 4444
Q ss_pred CCCchhHHHHHHhcCCCCcEEEe---cCCHHHHHHHH----HhCCCEEEEcCCCC-CcchHHHHHHHHhhccceEeeccc
Q 021609 123 VLTPADEENHINKHNFRIPFVCG---CRNLGEALRRI----REGAAMIRTKGEAG-TGNIIEAVRHVRSVMGDIRVLRNM 194 (310)
Q Consensus 123 ~~~~~~~~~~i~~~~~~i~~~v~---~~t~~ea~~~~----~~Gad~V~v~g~~~-~~~~~~~~~~~r~~~~~~~~l~~~ 194 (310)
.....++.+.+.+ .+.++.+. ..+.+|...++ ..|..-|.+--++. +.. .+
T Consensus 187 ~~~n~~LL~~~g~--t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~------------------~~- 245 (338)
T d1vr6a1 187 NAQNFRLLSKAGS--YNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFE------------------KA- 245 (338)
T ss_dssp GTTCHHHHHHHHT--TCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSC------------------CS-
T ss_pred hccCHHHHHHhhc--cCCcEEecCccccchhhhhhhHHHHHhcCCccceeeeccccccc------------------cc-
Confidence 5566777666654 34455553 45777765554 34664433221221 000 00
Q ss_pred ChhHHHHhhhccCCcHHHHHHHhhcCCCCEEEe--CCCCCCCH--HHHHHHHHcCCCEEEEccccccCCCHH
Q 021609 195 DDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHF--AAGGVATP--ADAAMMMQLGCDGVFVGSGVFKSGDPV 262 (310)
Q Consensus 195 ~~d~~~~~~~~~~~~~~~i~~i~~~~~iPVi~i--A~GGI~t~--~d~~~~l~~GadgV~VGsai~~a~dp~ 262 (310)
. ....++..+..+++...+||++- =+||-+.. .=++.++.+||||+++=. ++||.
T Consensus 246 ~---------~~~lD~~~i~~~k~~~~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~----Hp~P~ 304 (338)
T d1vr6a1 246 T---------RNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEV----HPEPE 304 (338)
T ss_dssp S---------SSBCCTTHHHHHHHHBSSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEB----CSCGG
T ss_pred c---------ccchhhcccceeeccccCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEe----CCCcc
Confidence 0 01223334555666677899842 12443222 224455688999999753 45664
|
| >d1gzga_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.07 E-value=3.2 Score=35.70 Aligned_cols=97 Identities=11% Similarity=0.131 Sum_probs=49.4
Q ss_pred HHHHHHHHcCCcEEEeccCC-cccccccCCCC-CCC---CHHHHHHHHhhc-Ccceeec-----------cc-------c
Q 021609 46 EQARVAEEAGACAVMALERV-PADIRSQGGVA-RMS---DPQLIKEIKQSV-TIPVMAK-----------AR-------I 101 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~-~~~~~~~~G~~-~~~---~~~~i~~i~~~~-~iPv~vk-----------~~-------~ 101 (310)
+.++.+.+.|..+++ |=|. +...+...|+. +-. ....++.+|+.+ ++-|+.. +. +
T Consensus 64 ~~ie~~~~lGI~av~-LFpvi~~~~Kd~~gseA~n~d~lv~rAIr~IK~~~p~l~vi~DVcLc~YT~hGHcGil~~~g~i 142 (329)
T d1gzga_ 64 IEAEEWVALGIPALA-LFPVTPVEKKSLDAAEAYNPEGIAQRATRALRERFPELGIITDVALDPFTTHGQNGILDDDGYV 142 (329)
T ss_dssp HHHHHHHHHTCCEEE-EEECCCGGGCBSSCGGGGCTTSHHHHHHHHHHHHCTTSEEEEEECSTTTBTTCCSSCBCTTSCB
T ss_pred HHHHHHHhcCcceEE-EEeeeccccccCCcccccCcchHHHHHHHHHHHhhCcEEEEehhccchhhhhccCCcccCCCCc
Confidence 568888999999872 2121 11222222331 111 124677777664 4445442 11 1
Q ss_pred CcH-------HHHHHHHHcCCCEEEeCCCCC--chhHHHHHHhcCCC-CcEE
Q 021609 102 GHF-------VEAQILEAIGIDYVDESEVLT--PADEENHINKHNFR-IPFV 143 (310)
Q Consensus 102 ~~~-------~~a~~~~~aGad~Vi~~~~~~--~~~~~~~i~~~~~~-i~~~ 143 (310)
... +.+-.+.++|||.|--++-+. ...+++.+.+.++. ++++
T Consensus 143 dND~Tl~~L~k~Al~~A~AGaDivAPSdMMDGrV~aIR~~Ld~~g~~~v~Im 194 (329)
T d1gzga_ 143 LNDVSIDVLVRQALSHAEAGAQVVAPSDMMDGRIGAIREALESAGHTNVRVM 194 (329)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEEEECSCCTTHHHHHHHHHHHTTCTTCEEE
T ss_pred CcHHHHHHHHHHHHHHHHccCCeeeccccchhHHHHHHHHHHHcCCcCccee
Confidence 111 233444569999996555443 34556666665543 4443
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=85.53 E-value=5.2 Score=33.10 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=49.4
Q ss_pred HHHHHHHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhc--CCCCEEEeC
Q 021609 151 EALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQL--GRLPVVHFA 228 (310)
Q Consensus 151 ea~~~~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~--~~iPVi~iA 228 (310)
.++.+.+.|++.+.+.|..+-. ..++.++- ..+++.+.+. .++|+++ .
T Consensus 29 ~i~~l~~~Gv~gl~~~G~tGE~-------------------~~Ls~~Er----------~~l~~~~~~~~~~~~~vi~-g 78 (292)
T d1xkya1 29 LVNYLIDNGTTAIVVGGTTGES-------------------PTLTSEEK----------VALYRHVVSVVDKRVPVIA-G 78 (292)
T ss_dssp HHHHHHHTTCCEEEESSTTTTG-------------------GGSCHHHH----------HHHHHHHHHHHTTSSCEEE-E
T ss_pred HHHHHHHCCCCEEEECeEccch-------------------hhCCHHHH----------HHHHHHHHHHhCCCceEEE-e
Confidence 3556678899999988765422 12222211 2223333322 4689985 4
Q ss_pred CCCCCCHHHH----HHHHHcCCCEEEEccccccCCCHHHHHH
Q 021609 229 AGGVATPADA----AMMMQLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 229 ~GGI~t~~d~----~~~l~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
.|+.+ ..++ ..+.++|||++++.-..+-..+.....+
T Consensus 79 v~~~s-~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~ 119 (292)
T d1xkya1 79 TGSNN-THASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQ 119 (292)
T ss_dssp CCCSC-HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHH
T ss_pred cCccc-HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHH
Confidence 45554 4443 3344789999999988776555544444
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=85.23 E-value=4.3 Score=33.68 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=32.0
Q ss_pred CCCCEEEeCCCCCCCHHHHHHH----HHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 220 GRLPVVHFAAGGVATPADAAMM----MQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~----l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.++||++ ..|.. +.+++.++ .++|||++++.-.++...+.....+ +.+.+
T Consensus 69 ~~~~vi~-gv~~~-st~~ai~~a~~A~~~Gad~v~v~pP~y~~~s~~~i~~-~~~~i 122 (295)
T d1o5ka_ 69 GKIPVIV-GAGTN-STEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQ-HYKYI 122 (295)
T ss_dssp TSSCEEE-ECCCS-CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHH-HHHHH
T ss_pred cCCceEe-ecccc-cHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHH-HHHHH
Confidence 4689984 34444 45453333 3579999999988887666655554 33333
|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Bacillus anthracis [TaxId: 1392]
Probab=84.98 E-value=2.5 Score=35.50 Aligned_cols=83 Identities=13% Similarity=0.163 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHH-------HHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQL-------IKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~-------i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
+.|+.+.+.||+.| ++..+.+.. |.......++ ++.+++..++|+.+..+ ..+.++.+.++||+.|
T Consensus 46 ~~a~~~i~~GAdiI-DIGaeSTrP----g~~~is~~eE~~rl~p~i~~~~~~~~~~iSIDT~--~~~Va~~al~~G~~iI 118 (273)
T d1tx2a_ 46 RHAKEMRDEGAHII-DIGGESTRP----GFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTY--KAEVAKQAIEAGAHII 118 (273)
T ss_dssp HHHHHHHHTTCSEE-EEESCC--------CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECS--CHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHCCCCEE-Eeeceeccc----cccccCHHHHHHhhchhHHhhhccceEEEehHHh--hHHHHHHHHHcCCeEE
Confidence 46888899999976 774222211 1111111233 33334556788877665 3478899999999988
Q ss_pred E-eCCCCCchhHHHHHHh
Q 021609 119 D-ESEVLTPADEENHINK 135 (310)
Q Consensus 119 i-~~~~~~~~~~~~~i~~ 135 (310)
- .+.....+...+.+.+
T Consensus 119 NDvsg~~~D~~m~~~~~~ 136 (273)
T d1tx2a_ 119 NDIWGAKAEPKIAEVAAH 136 (273)
T ss_dssp EETTTTSSCTHHHHHHHH
T ss_pred eccccccchhHHHHHHHh
Confidence 3 4433333444444433
|
| >d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator DrrB species: Thermotoga maritima [TaxId: 2336]
Probab=84.92 E-value=1.8 Score=31.25 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=40.9
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+++++++++. .++|++++ .+-.+.+...+++++||+..+ .|.-+|......+.+.++
T Consensus 59 ~~~~~~lr~~~~~~~ii~i--t~~~~~~~~~~a~~~Ga~dyl-----~KP~~~~~L~~~i~~~l~ 116 (120)
T d1p2fa2 59 YEICRMIKETRPETWVILL--TLLSDDESVLKGFEAGADDYV-----TKPFNPEILLARVKRFLE 116 (120)
T ss_dssp HHHHHHHHHHCTTSEEEEE--ESCCSHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCCcEEEE--ecCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHHH
Confidence 6667777643 56888865 666789999999999999986 665567665555554443
|
| >d1h7na_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.76 E-value=8.3 Score=33.10 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=41.7
Q ss_pred ecCCHHHHHHH----HHhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccCCcHHHHHHHhhcC
Q 021609 145 GCRNLGEALRR----IREGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLG 220 (310)
Q Consensus 145 ~~~t~~ea~~~----~~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~i~~i~~~~ 220 (310)
+..+..||.+. .+.|||++.|.+.. +.++.+.++++..
T Consensus 238 d~~n~~eAl~e~~~D~~EGAD~lMVKPa~--------------------------------------~yLDii~~~k~~~ 279 (340)
T d1h7na_ 238 PPAGRGLARRALERDMSEGADGIIVKPST--------------------------------------FYLDIMRDASEIC 279 (340)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSEEEEESSG--------------------------------------GGHHHHHHHHHHT
T ss_pred CchhhHHHHHHHHHHHhcCCCeEEecchH--------------------------------------HHHHHHHHHHHhC
Confidence 44566666664 35699999987531 2355677776654
Q ss_pred -CCCEEEe------------CCCCCCCHHH-----HHHHHHcCCCEEE
Q 021609 221 -RLPVVHF------------AAGGVATPAD-----AAMMMQLGCDGVF 250 (310)
Q Consensus 221 -~iPVi~i------------A~GGI~t~~d-----~~~~l~~GadgV~ 250 (310)
++|+.+. +.-|.-+.++ +..+.++|||.++
T Consensus 280 ~~~Pv~aYqVSGEYami~~aa~~G~~d~~~~~~E~l~~~kRAGAd~Ii 327 (340)
T d1h7na_ 280 KDLPICAYHVSGEYAMLHAAAEKGVVDLKTIAFESHQGFLRAGARLII 327 (340)
T ss_dssp TTSCEEEEECHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCCCEEEEEchHHHHHHHHHHHCCCCcHHHHHHHHHHHHHhcCCCEEE
Confidence 5787653 2234435443 4444578999987
|
| >d2c1ha1 c.1.10.3 (A:10-328) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Prosthecochloris vibrioformis [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Prosthecochloris vibrioformis [TaxId: 1098]
Probab=84.65 E-value=4.4 Score=34.64 Aligned_cols=92 Identities=16% Similarity=0.260 Sum_probs=47.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC-CCC---CHHHHHHHHhhc-Ccceeecc-----------cc------Cc
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA-RMS---DPQLIKEIKQSV-TIPVMAKA-----------RI------GH 103 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~~---~~~~i~~i~~~~-~iPv~vk~-----------~~------~~ 103 (310)
+.++.+.+.|...+... |.+.. +...|+. .-. ....++.+++.+ ++-|++.. .+ ..
T Consensus 59 ~~ie~~~~lGI~av~LF-pv~~~-K~k~gseA~n~dglv~rAir~iK~~fpdl~Ii~DVcLcpYT~hGHcGi~~~g~IdN 136 (319)
T d2c1ha1 59 EECKELYDLGIQGIDLF-GIPEQ-KTEDGSEAYNDNGILQQAIRAIKKAVPELCIMTDVALDPFTPFGHDGLVKDGIILN 136 (319)
T ss_dssp HHHHHHHHTTCCEEEEE-ECCSC-CCTTCGGGGCTTCHHHHHHHHHHHHCTTSEEEEECCSGGGSTTCCSSCBSSSCBCS
T ss_pred HHHHHHHhccCcEEEEE-ecccc-cccCchhhcccccHHHHHHHHHHhhhcCeEEEeecccchhhhhcccceecCCCcch
Confidence 56888899999987222 22222 1112221 111 124677777765 34454421 11 11
Q ss_pred H-------HHHHHHHHcCCCEEEeCCCCC--chhHHHHHHhcCCC
Q 021609 104 F-------VEAQILEAIGIDYVDESEVLT--PADEENHINKHNFR 139 (310)
Q Consensus 104 ~-------~~a~~~~~aGad~Vi~~~~~~--~~~~~~~i~~~~~~ 139 (310)
. +.+-...++|||.|--++-+. ...+++.+.+.++.
T Consensus 137 D~Tl~~L~k~Al~~A~AGaDiVAPSdMMDGrV~aIR~~Ld~~g~~ 181 (319)
T d2c1ha1 137 DETVEVLQKMAVSHAEAGADFVSPSDMMDGRIGAIREALDETDHS 181 (319)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEECCSCCTTHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccccchhHHHHHHHHHHhcCcc
Confidence 1 334444569999996555443 34556666665543
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=84.47 E-value=2 Score=36.09 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=50.8
Q ss_pred CHHHHHHHHHcCCcEEEeccCCc---ccccc--------cC---CCC-CCCCHHHHHHHHhhcCcceeeccccCcHHHHH
Q 021609 44 TPEQARVAEEAGACAVMALERVP---ADIRS--------QG---GVA-RMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQ 108 (310)
Q Consensus 44 ~~~~A~~~~~~Ga~~i~~L~~~~---~~~~~--------~~---G~~-~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~ 108 (310)
..+.++.+.+.|+++++..|... .+... .+ |.. .....+.++++++.+++||+....+...+++.
T Consensus 178 ~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~GGI~s~~Da~ 257 (311)
T d1ep3a_ 178 IVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVL 257 (311)
T ss_dssp SHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHH
T ss_pred hHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEeCCcCCHHHHH
Confidence 45789999999999985555110 00000 01 110 01125678888888999999988777777887
Q ss_pred HHHHcCCCEEE
Q 021609 109 ILEAIGIDYVD 119 (310)
Q Consensus 109 ~~~~aGad~Vi 119 (310)
.+..+|||.|-
T Consensus 258 ~~i~~GAd~V~ 268 (311)
T d1ep3a_ 258 EMYMAGASAVA 268 (311)
T ss_dssp HHHHHTCSEEE
T ss_pred HHHHcCCCEEE
Confidence 77789999993
|
| >d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.38 E-value=4.9 Score=28.71 Aligned_cols=56 Identities=11% Similarity=0.164 Sum_probs=38.8
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+++++++++. ..+|++++ .+-.+.++..+++++||+..+ .+.-+|......+.+.+
T Consensus 61 ~~~~~~lr~~~~~~piI~l--t~~~~~~~~~~~~~~Ga~~yl-----~KP~~~~~L~~~i~~~l 117 (122)
T d1kgsa2 61 WEILKSMRESGVNTPVLML--TALSDVEYRVKGLNMGADDYL-----PKPFDLRELIARVRALI 117 (122)
T ss_dssp HHHHHHHHHTTCCCCEEEE--ESSCHHHHHHHTCCCCCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEE--cCCCCHHHHHHHHHcCCceee-----cCCCCHHHHHHHHHHHH
Confidence 5666666654 46899865 555688999999999999987 45446665555554444
|
| >d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Escherichia coli [TaxId: 562]
Probab=84.24 E-value=2 Score=36.34 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHH-------HHHHHhhcCcceeeccccCcHHHHHHHHHcCCCEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQL-------IKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~-------i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aGad~V 118 (310)
..|+.+.+.||+.| |+..+.+.. |.......++ ++.+++..++|+.+..+ ..+.++.+.++||+.|
T Consensus 42 ~~a~~mi~~GAdiI-DIGgeSTrP----ga~~vs~eeE~~Rl~pvi~~l~~~~~~~iSIDT~--~~eVa~~al~~Ga~iI 114 (282)
T d1ajza_ 42 KHANLMINAGATII-DVGGESTRP----GAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTS--KPEVIRESAKVGAHII 114 (282)
T ss_dssp HHHHHHHHHTCSEE-EEESSCCST----TCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC--CHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHCCCCEE-EECCccccc----cccCCcHHHHHHHHHHHHHHHhhcccceEEEEec--ChHHHHHHHhcCceEE
Confidence 56788899999965 774222211 1212222233 33445566777777665 3478899999999999
Q ss_pred -EeCCCCCchhHHHHHHhc
Q 021609 119 -DESEVLTPADEENHINKH 136 (310)
Q Consensus 119 -i~~~~~~~~~~~~~i~~~ 136 (310)
.++ ++...+..+.+.++
T Consensus 115 NDvs-g~~~~~~~~~va~~ 132 (282)
T d1ajza_ 115 NDIR-SLSEPGALEAAAET 132 (282)
T ss_dssp CCTT-TTCSTTHHHHHHHH
T ss_pred echh-hcccchhHHHhhcc
Confidence 343 33333444444443
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=84.19 E-value=6.1 Score=28.90 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=60.0
Q ss_pred HHHHHHhcCCCCcEEEecCCHHHHHHHH-HhCCCEEEEcCCCCCcchHHHHHHHHhhccceEeecccChhHHHHhhhccC
Q 021609 129 EENHINKHNFRIPFVCGCRNLGEALRRI-REGAAMIRTKGEAGTGNIIEAVRHVRSVMGDIRVLRNMDDDEVFTFAKKIA 207 (310)
Q Consensus 129 ~~~~i~~~~~~i~~~v~~~t~~ea~~~~-~~Gad~V~v~g~~~~~~~~~~~~~~r~~~~~~~~l~~~~~d~~~~~~~~~~ 207 (310)
+..++...++. +..+.+.++|.... +..+|.|.+.-.. + ..
T Consensus 17 l~~~L~~~g~~---v~~a~~~~eal~~~~~~~~dlil~D~~~----------------------p-------------~~ 58 (139)
T d1w25a1 17 LEAKLTAEYYE---VSTAMDGPTALAMAARDLPDIILLDVMM----------------------P-------------GM 58 (139)
T ss_dssp HHHHHHHTTCE---EEEESSHHHHHHHHHHHCCSEEEEESCC----------------------S-------------SS
T ss_pred HHHHHHHCCCE---EEEEccchhhhhhhhcccceeeeeeccc----------------------c-------------CC
Confidence 34445444442 33567888888765 4567877654211 0 01
Q ss_pred CcHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 208 APYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 208 ~~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
..+++++.++.. .++||+.+ .+-.+.++..+++++||+..+ .+.-+|......+...+
T Consensus 59 ~G~~~~~~ir~~~~~~~~piI~l--t~~~~~~~~~~a~~~Ga~dyl-----~KP~~~~~L~~~i~~~l 119 (139)
T d1w25a1 59 DGFTVCRKLKDDPTTRHIPVVLI--TALDGRGDRIQGLESGASDFL-----TKPIDDVMLFARVRSLT 119 (139)
T ss_dssp CHHHHHHHHHHSTTTTTSCEEEE--ECSSCHHHHHHHHHHTCCEEE-----ESSCCHHHHHHHHHHHH
T ss_pred CchHHHHHhhhcccccCCCEEEE--EcCCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHH
Confidence 124455555542 46899965 666789999999999999986 45445655554444443
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.13 E-value=0.93 Score=38.02 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=42.9
Q ss_pred HHHHHHHHcCCcEEEecc-CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHc--CCCEE
Q 021609 46 EQARVAEEAGACAVMALE-RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAI--GIDYV 118 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~-~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~a--Gad~V 118 (310)
+.|+...+.||+.| |+| ..+... . . ......++.++..+++|+.+... ..+.++.++++ |++.|
T Consensus 44 ~~A~~qv~~GA~iL-DIn~~~~~~~-e---~--~~m~~li~~l~~~~d~PlsIDT~--~~~v~eaaLk~~~G~~iI 110 (260)
T d3bofa1 44 KEAKTQVEKGAEVL-DVNFGIESQI-D---V--RYVEKIVQTLPYVSNVPLSLDIQ--NVDLTERALRAYPGRSLF 110 (260)
T ss_dssp HHHHHHHHTTCSEE-EEECSSGGGS-C---H--HHHHHHHHHHHHHTCSCEEEECC--CHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHHHcCCCEE-EeecCCchhh-h---H--HHHHHHHHHHHhcCCCCccccCC--CHHHHHHHHHHhcCcceE
Confidence 67999999999976 887 222211 1 0 01135667777788999997764 34667777776 88877
|
| >d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: PhoB receiver domain species: Escherichia coli [TaxId: 562]
Probab=84.09 E-value=5.5 Score=28.34 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=38.9
Q ss_pred cHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 209 PYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 209 ~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.+++++++++. .++|++++ .+-.+.++..+++++|+++.+ .+.-++......+.+.+
T Consensus 59 G~~l~~~lr~~~~~~~~pvi~l--t~~~~~~~~~~~~~~G~~d~l-----~KP~~~~~L~~~v~~~l 118 (121)
T d1zesa1 59 GIQFIKHLKRESMTRDIPVVML--TARGEEEDRVRGLETGADDYI-----TKPFSPKELVARIKAVM 118 (121)
T ss_dssp HHHHHHHHHHSTTTTTSCEEEE--ESCCSHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccCCCCeEEEE--ECCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHH
Confidence 36677777653 36999965 555689999999999999986 45445555444444333
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=83.78 E-value=5.7 Score=28.27 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=33.8
Q ss_pred HHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 210 YDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 210 ~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+++++++++. .++|++++ .+-.+.++..+++++|+++.+ .+.-++....+.+.+.+
T Consensus 61 ~el~~~ir~~~~~~~iPii~l--t~~~~~~~~~~~~~~G~~~~l-----~KP~~~~~L~~~i~~~l 119 (123)
T d1mb3a_ 61 LEVTKWLKEDDDLAHIPVVAV--TAFAMKGDEERIREGGCEAYI-----SKPISVVHFLETIKRLL 119 (123)
T ss_dssp HHHHHHHHHSTTTTTSCEEEE--C------CHHHHHHHTCSEEE-----CSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCCeEEE--EEecCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHH
Confidence 6677777654 46899865 555678888899999999975 45335555555444444
|
| >d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.77 E-value=2 Score=35.96 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCCCCCCHHHHHHHH------hhcCcceeeccccCcHHHHHHHHHcCCCEEE
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVARMSDPQLIKEIK------QSVTIPVMAKARIGHFVEAQILEAIGIDYVD 119 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~~~~~~~~i~~i~------~~~~iPv~vk~~~~~~~~a~~~~~aGad~Vi 119 (310)
+.|+.+.+.||+.| |+-.+.+.. |.......+.+.++. +..++++.+..+ ..+.++.+.++|||.+=
T Consensus 29 ~~a~~~~~~GAdiI-DIGgeSTrP----ga~~is~~eE~~Rl~p~i~~~~~~~~~iSIDT~--~~~Va~~al~~Ga~iIN 101 (270)
T d1eyea_ 29 KHGLAMAAAGAGIV-DVGGESSRP----GATRVDPAVETSRVIPVVKELAAQGITVSIDTM--RADVARAALQNGAQMVN 101 (270)
T ss_dssp HHHHHHHHTTCSEE-EEECC------------------HHHHHHHHHHHHHTTCCEEEECS--CHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHCCCCEE-EECCccCCC----CCEeeechhhcccccceeeeecccceeechHhh--hHHHHHHHHhcCCeEEE
Confidence 56889999999976 774222211 111111123333321 223677776554 34788999999999983
Q ss_pred -eCCCCCchhHHHHHHh
Q 021609 120 -ESEVLTPADEENHINK 135 (310)
Q Consensus 120 -~~~~~~~~~~~~~i~~ 135 (310)
.+.......+...+.+
T Consensus 102 Dvsg~~~d~~m~~~~a~ 118 (270)
T d1eyea_ 102 DVSGGRADPAMGPLLAE 118 (270)
T ss_dssp ETTTTSSCTTHHHHHHH
T ss_pred eccccccchhHHhhhhh
Confidence 4433333444444433
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.21 E-value=6.2 Score=32.76 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=32.0
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHH----HcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 220 GRLPVVHFAAGGVATPADAAMMM----QLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l----~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.++|+++ ..|+- +.+++.++. ++|+|++++....+...+.....+ +.+.+
T Consensus 75 ~~~~vi~-g~~~~-s~~~~i~~a~~a~~~Gad~v~i~~P~~~~~~~~~l~~-~~~~v 128 (296)
T d1xxxa1 75 DRARVIA-GAGTY-DTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQA-HFTAV 128 (296)
T ss_dssp TTSEEEE-ECCCS-CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHH-HHHHH
T ss_pred cccceEe-ccccc-hhHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHH-HHHHH
Confidence 4689985 45565 445443333 579999999999887666544444 33333
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.20 E-value=2.5 Score=35.77 Aligned_cols=74 Identities=26% Similarity=0.302 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCcEEEeccCC-------------ccc---c-cccC---CCCC-CCCHHHHHHHHhhc-CcceeeccccCc
Q 021609 46 EQARVAEEAGACAVMALERV-------------PAD---I-RSQG---GVAR-MSDPQLIKEIKQSV-TIPVMAKARIGH 103 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~-------------~~~---~-~~~~---G~~~-~~~~~~i~~i~~~~-~iPv~vk~~~~~ 103 (310)
+.++.+.++|+++++..|.. +.. . ..++ |... ....+.++.+++.+ ++|++....+..
T Consensus 187 ~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~~ 266 (312)
T d1gtea2 187 SIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDS 266 (312)
T ss_dssp HHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCS
T ss_pred HHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCCC
Confidence 56888899999998555510 000 0 0011 1111 11246777888776 699999888877
Q ss_pred HHHHHHHHHcCCCEEE
Q 021609 104 FVEAQILEAIGIDYVD 119 (310)
Q Consensus 104 ~~~a~~~~~aGad~Vi 119 (310)
.+++..+..+|||.|-
T Consensus 267 ~~d~~~~l~aGA~~Vq 282 (312)
T d1gtea2 267 AESGLQFLHSGASVLQ 282 (312)
T ss_dssp HHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHcCCCeeE
Confidence 8889889999999993
|
| >d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: TorCAD operon transcriptional regulator TorD, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.85 E-value=6.2 Score=27.95 Aligned_cols=56 Identities=11% Similarity=0.133 Sum_probs=39.8
Q ss_pred HHHHHHHhhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 210 ~~~i~~i~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
+++++.++....+|++.+ .+-.+.++..+++++||+..+ .|.-++.....++.+.+
T Consensus 61 ~~~~~~~~~~~~~piI~l--t~~~~~~~~~~a~~~Ga~dyl-----~KP~~~~~L~~~i~~~l 116 (120)
T d1zgza1 61 LMLTRALRERSTVGIILV--TGRSDRIDRIVGLEMGADDYV-----TKPLELRELVVRVKNLL 116 (120)
T ss_dssp HHHHHHHHTTCCCEEEEE--ESSCCHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCeEEEE--EccCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHH
Confidence 556777777678899865 556688999999999999987 55445655554444433
|
| >d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]
Probab=82.79 E-value=1.5 Score=32.61 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=41.2
Q ss_pred HHHHHHHhhcC---CCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHhcc
Q 021609 210 YDLVMQTKQLG---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTHY 275 (310)
Q Consensus 210 ~~~i~~i~~~~---~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~~ 275 (310)
+++++++++.. ++||+.+ .+-.+.++..+++++|+++.+ .+.-++....+.+.+..+.|
T Consensus 71 ~el~~~ir~~~~~~~iPvI~l--s~~~~~~~~~~a~~~Ga~~yl-----~KP~~~~~L~~~i~~i~~~~ 132 (140)
T d1k68a_ 71 REVLAEIKSDPTLKRIPVVVL--STSINEDDIFHSYDLHVNCYI-----TKSANLSQLFQIVKGIEEFW 132 (140)
T ss_dssp HHHHHHHHHSTTGGGSCEEEE--ESCCCHHHHHHHHHTTCSEEE-----ECCSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCcccCCCcEEEE--eCCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHHHHH
Confidence 67777777642 5899965 555689999999999999886 45445665555555444434
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=81.94 E-value=12 Score=30.66 Aligned_cols=146 Identities=13% Similarity=0.160 Sum_probs=74.8
Q ss_pred HHHHHHHHcCCCEEE--eCC----CCCchhHH---HHHHh-cCCCCcEEEe--cCCHHH----HHHHHHhCCCEEEEcCC
Q 021609 105 VEAQILEAIGIDYVD--ESE----VLTPADEE---NHINK-HNFRIPFVCG--CRNLGE----ALRRIREGAAMIRTKGE 168 (310)
Q Consensus 105 ~~a~~~~~aGad~Vi--~~~----~~~~~~~~---~~i~~-~~~~i~~~v~--~~t~~e----a~~~~~~Gad~V~v~g~ 168 (310)
..++-+.+.|++++. ++. .++..|-. +.+.+ .+.+++++++ ..+.++ ++.+.++|+|.+.+..+
T Consensus 28 ~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~ilv~pP 107 (292)
T d1xkya1 28 KLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVDAVMLVAP 107 (292)
T ss_dssp HHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 456777889999996 222 24444433 33333 2344665555 444444 55566789999888765
Q ss_pred CC-CcchHHHHHHHHhhccc----eEeecc-------cChhHHHHhh--------hccCCcHHHHHHHhhc-C-CCCEEE
Q 021609 169 AG-TGNIIEAVRHVRSVMGD----IRVLRN-------MDDDEVFTFA--------KKIAAPYDLVMQTKQL-G-RLPVVH 226 (310)
Q Consensus 169 ~~-~~~~~~~~~~~r~~~~~----~~~l~~-------~~~d~~~~~~--------~~~~~~~~~i~~i~~~-~-~iPVi~ 226 (310)
.+ ..+-.+..++.++.... +-++.+ ++.+.+.+.+ |....+......+.+. . +..++
T Consensus 108 ~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~~p~v~giK~~~~~~~~~~~~~~~~~~~~~v~- 186 (292)
T d1xkya1 108 YYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIKDAGGDVLTMTEIIEKTADDFAVY- 186 (292)
T ss_dssp CSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEEECSSCHHHHHHHHHHSCTTCEEE-
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhccCCCEEEEeccccchhhhheeeeecCCCCEEE-
Confidence 43 22223556666654322 222221 1222221111 2223333333333222 2 23332
Q ss_pred eCCCCCCCHHHHHHHHHcCCCEEEEccccc
Q 021609 227 FAAGGVATPADAAMMMQLGCDGVFVGSGVF 256 (310)
Q Consensus 227 iA~GGI~t~~d~~~~l~~GadgV~VGsai~ 256 (310)
+|- ...+...+..|++|++.|.+-+
T Consensus 187 ---~G~--~~~~~~~~~~G~~G~~~~~~n~ 211 (292)
T d1xkya1 187 ---SGD--DGLTLPAMAVGAKGIVSVASHV 211 (292)
T ss_dssp ---ESS--GGGHHHHHHTTCCEEEESTHHH
T ss_pred ---ECC--ccccchHHHcCCCccccchhhH
Confidence 332 3456667789999999997744
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=81.79 E-value=1.8 Score=36.25 Aligned_cols=85 Identities=15% Similarity=0.101 Sum_probs=57.6
Q ss_pred HHHHHHHhhcCcceeeccccC--cHHHHHHHHHcCCCEEEeCC--C------------------------CCchhHHHHH
Q 021609 82 QLIKEIKQSVTIPVMAKARIG--HFVEAQILEAIGIDYVDESE--V------------------------LTPADEENHI 133 (310)
Q Consensus 82 ~~i~~i~~~~~iPv~vk~~~~--~~~~a~~~~~aGad~Vi~~~--~------------------------~~~~~~~~~i 133 (310)
..........+.|+.+|...+ ..++++.+.++|+|.++.+. . .+..+....+
T Consensus 149 ~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~ 228 (310)
T d1vcfa1 149 VERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEV 228 (310)
T ss_dssp HHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHH
T ss_pred HHHHHHHhhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccccccchhhcccccccCchhhhhhhhcchHHHHHHHHH
Confidence 344444445689999986543 46888999999999996321 1 0111112223
Q ss_pred HhcCCCCcEEEe--cCCHHHHHHHHHhCCCEEEEc
Q 021609 134 NKHNFRIPFVCG--CRNLGEALRRIREGAAMIRTK 166 (310)
Q Consensus 134 ~~~~~~i~~~v~--~~t~~ea~~~~~~Gad~V~v~ 166 (310)
.....+++++++ +++..|+.++..+|||.|.+.
T Consensus 229 ~~~~~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iG 263 (310)
T d1vcfa1 229 REVLPHLPLVASGGVYTGTDGAKALALGADLLAVA 263 (310)
T ss_dssp HHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred HhhcCCCeEEeCCCCCchHHHHHHHHhCCCEeeEh
Confidence 333456788776 899999999999999999874
|
| >d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator for cyanobacterial phytochrome species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]
Probab=81.69 E-value=3.2 Score=30.83 Aligned_cols=55 Identities=18% Similarity=0.169 Sum_probs=38.4
Q ss_pred cHHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 021609 209 PYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVR 270 (310)
Q Consensus 209 ~~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~ 270 (310)
.+++++++++. .++||+++ .+-.+.++..+++++|+++.+ .|.-++....+.+.+
T Consensus 71 G~el~~~ir~~~~~~~iPvi~l--T~~~~~~~~~~a~~~Ga~~yl-----~KP~~~~~L~~~i~~ 128 (144)
T d1i3ca_ 71 GREVLAEIKQNPDLKRIPVVVL--TTSHNEDDVIASYELHVNCYL-----TKSRNLKDLFKMVQG 128 (144)
T ss_dssp HHHHHHHHHHCTTTTTSCEEEE--ESCCCHHHHHHHHHTTCSEEE-----ECCSSHHHHHHHHHH
T ss_pred chHHHHHHHhCcccCCCeEEEE--ECCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHH
Confidence 36777777754 36899865 455689999999999999987 443345555544443
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=81.39 E-value=1.9 Score=37.20 Aligned_cols=83 Identities=17% Similarity=0.062 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCcEEEecc---CCcccccccCCCCCCCCHHHHHHHHhhcCcceeeccccCcHHHHHHHHHcC-CCEEEeC
Q 021609 46 EQARVAEEAGACAVMALE---RVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIG-IDYVDES 121 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~---~~~~~~~~~~G~~~~~~~~~i~~i~~~~~iPv~vk~~~~~~~~a~~~~~aG-ad~Vi~~ 121 (310)
+.++.++++|.+.+ ++. .......... .......+.+|+.+++||++..++...+.++.+++.| +|.|-..
T Consensus 232 ~~~~~l~~~g~d~~-~~s~g~~~~~~~~~~~----~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~g 306 (337)
T d1z41a1 232 GFAKWMKEQGVDLI-DCSSGALVHADINVFP----GYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFIG 306 (337)
T ss_dssp HHHHHHHHTTCCEE-EEECCCSSCCCCCCCT----TTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHcCCccc-ccccccccccccccCC----cccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehhh
Confidence 47888899999976 442 1100000011 1236788889999999999887776678888888888 9999533
Q ss_pred C-CCCchhHHHHH
Q 021609 122 E-VLTPADEENHI 133 (310)
Q Consensus 122 ~-~~~~~~~~~~i 133 (310)
. .+..+++.+.+
T Consensus 307 R~~iadPd~~~k~ 319 (337)
T d1z41a1 307 RELLRDPFFARTA 319 (337)
T ss_dssp HHHHHCTTHHHHH
T ss_pred HHHHhCchHHHHH
Confidence 2 22333444444
|
| >d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: GlpP-like family: GlpP-like domain: Glycerol uptake operon antiterminator-related protein TM1436 species: Thermotoga maritima [TaxId: 2336]
Probab=81.11 E-value=7.7 Score=30.00 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=23.6
Q ss_pred hhcCCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 217 ~~~~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
++..+.|++ |+|=|.+.+|+.++++. +.+|.
T Consensus 133 ~~~~~~piI--AGGLI~~~edv~~al~~-g~aVS 163 (172)
T d1vkfa_ 133 RKIPGRTVI--AAGLVETEEEAREILKH-VSAIS 163 (172)
T ss_dssp TTSTTSEEE--EESCCCSHHHHHHHTTT-SSEEE
T ss_pred HHhcCCCEE--eeCCcCCHHHHHHHHhc-CeEEE
Confidence 344567988 78889999999999965 45664
|
| >d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=80.58 E-value=2.6 Score=31.80 Aligned_cols=57 Identities=11% Similarity=0.237 Sum_probs=40.7
Q ss_pred HHHHHHHhhc---CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHh
Q 021609 210 YDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAVT 273 (310)
Q Consensus 210 ~~~i~~i~~~---~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i~ 273 (310)
+++++.+++. .++||+++ .+-.+.++..+++++||+..+ .+.-+|.....++...++
T Consensus 71 ~el~~~ir~~~~~~~iPiI~l--t~~~~~~~~~~a~~~Ga~d~l-----~KP~~~~~L~~~i~~~l~ 130 (153)
T d1w25a2 71 LRFTAALRSEERTRQLPVLAM--VDPDDRGRMVKALEIGVNDIL-----SRPIDPQELSARVKTQIQ 130 (153)
T ss_dssp HHHHHHHHTSGGGTTCCEEEE--ECTTCHHHHHHHHHTTCCEEE-----ESSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccccccceeEEe--ecCCCHHHHHHHHhcCcceEE-----ECCCCHHHHHHHHHHHHH
Confidence 6677777643 47999965 566789999999999999987 554566655555555444
|
| >d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Plasmodium vivax [TaxId: 5855]
Probab=80.47 E-value=0.49 Score=41.29 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=41.0
Q ss_pred HHHHHhhc-CCCCEEEeCCCCCC--CHHHHHHHH---HcCCCEEEEccccccCCCHHHHHHHHHHHHhc
Q 021609 212 LVMQTKQL-GRLPVVHFAAGGVA--TPADAAMMM---QLGCDGVFVGSGVFKSGDPVKRAQAIVRAVTH 274 (310)
Q Consensus 212 ~i~~i~~~-~~iPVi~iA~GGI~--t~~d~~~~l---~~GadgV~VGsai~~a~dp~~~a~~l~~~i~~ 274 (310)
.++.+++. .+.|+++. +=|-. +.+++.... ..|++.+++||.|++++||...++++.+.+++
T Consensus 260 e~~~iR~~~~~~~iL~P-GIGaQggDq~rv~t~~~a~~~ga~~IvvGR~I~~A~dp~~aa~~i~~ei~e 327 (332)
T d2ffca1 260 EIKKIRELFPDCYILAP-GVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIKE 327 (332)
T ss_dssp HHHHHHHHCTTCCEEEC-CBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCeEEeC-CcCcCCCCHHHHhCHHhHhhcCceEEEeCccccCCCCHHHHHHHHHHHHHH
Confidence 34555543 46777653 21221 333332222 35889999999999999999999999888864
|
| >d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein PrrA, N-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.45 E-value=3.7 Score=29.45 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=39.0
Q ss_pred cHHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 021609 209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVKRAQAIVRAV 272 (310)
Q Consensus 209 ~~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~VGsai~~a~dp~~~a~~l~~~i 272 (310)
.+++++++++. .++|++++ .+-.+.++..+++++||+..+ .|.-++......+.+.+
T Consensus 60 G~el~~~ir~~~~~~piI~l--t~~~~~~~~~~a~~~Ga~dyl-----~KP~~~~~L~~~i~~~l 117 (121)
T d1ys7a2 60 GVSVVTALRAMDNDVPVCVL--SARSSVDDRVAGLEAGADDYL-----VKPFVLAELVARVKALL 117 (121)
T ss_dssp HHHHHHHHHHTTCCCCEEEE--ECCCTTTCCCTTTTTTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHhcCCCCEEEEE--EeeCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHH
Confidence 36677777664 47999865 556688889999999999985 55445555444444333
|
| >d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0F species: Bacillus subtilis [TaxId: 1423]
Probab=80.42 E-value=7.7 Score=27.48 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHHHHHhhc-CCCCEEEeCCCCCCCHHHHHHHHHcCCCEEE
Q 021609 210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250 (310)
Q Consensus 210 ~~~i~~i~~~-~~iPVi~iA~GGI~t~~d~~~~l~~GadgV~ 250 (310)
+++++++++. .++|++.+ .|-.+.++..+++++|+++.+
T Consensus 61 ~el~~~lr~~~~~~pvi~l--t~~~~~~~~~~a~~~Ga~~yl 100 (119)
T d1peya_ 61 IEILKRMKVIDENIRVIIM--TAYGELDMIQESKELGALTHF 100 (119)
T ss_dssp HHHHHHHHHHCTTCEEEEE--ESSCCHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHhCCCCcEEEE--ecCCCHHHHHHHHHCCCCEEE
Confidence 6667777653 46899865 566789999999999999986
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=80.33 E-value=8.6 Score=31.71 Aligned_cols=45 Identities=22% Similarity=0.362 Sum_probs=30.2
Q ss_pred CCCCEEEeCCCCCCCHHHHHHHH----HcCCCEEEEccccccCCCHHHHHH
Q 021609 220 GRLPVVHFAAGGVATPADAAMMM----QLGCDGVFVGSGVFKSGDPVKRAQ 266 (310)
Q Consensus 220 ~~iPVi~iA~GGI~t~~d~~~~l----~~GadgV~VGsai~~a~dp~~~a~ 266 (310)
.++|+++ ..|+ .+.++..++. ++|+|++++....+...+.....+
T Consensus 69 ~~~~vi~-g~~~-~s~~~~i~~~~~a~~~Gad~~~~~pP~~~~~~~~~i~~ 117 (292)
T d2a6na1 69 GRIPVIA-GTGA-NATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQ 117 (292)
T ss_dssp TSSCEEE-ECCC-SSHHHHHHHHHTTTTSSCCEEEEECCCSSCCCHHHHHH
T ss_pred ccceeEe-eccc-chHHHHHHHhccHHhcCCcceeccCCCCCCCCHHHHHH
Confidence 4689984 3344 4556555544 469999999999887666555544
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=80.25 E-value=4.7 Score=33.17 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCcEEEeccCCcccccccCCCC-CCCCHHHHHHHHhhc-CcceeeccccC--------c----HHHHHHHH
Q 021609 46 EQARVAEEAGACAVMALERVPADIRSQGGVA-RMSDPQLIKEIKQSV-TIPVMAKARIG--------H----FVEAQILE 111 (310)
Q Consensus 46 ~~A~~~~~~Ga~~i~~L~~~~~~~~~~~G~~-~~~~~~~i~~i~~~~-~iPv~vk~~~~--------~----~~~a~~~~ 111 (310)
+.+..+...|||.+ ++. .+.+.... .....+.++.+++.+ ++|+++-.|.. . .+..+.+.
T Consensus 32 ~~~~~~~~~~aD~v-E~R-----lD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~ 105 (252)
T d1gqna_ 32 AEALAYREATFDIL-EWR-----VDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAI 105 (252)
T ss_dssp HHHHHHTTSCCSEE-EEE-----GGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCEE-EEE-----EccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHHHHH
Confidence 34566677899976 442 11111000 000123455556654 69999854331 1 23345566
Q ss_pred HcC-CCEEEeCCCCCchhHHHHHHh-cCCCCcEEEecCCH------HHH----HHHHHhCCCEEEEc
Q 021609 112 AIG-IDYVDESEVLTPADEENHINK-HNFRIPFVCGCRNL------GEA----LRRIREGAAMIRTK 166 (310)
Q Consensus 112 ~aG-ad~Vi~~~~~~~~~~~~~i~~-~~~~i~~~v~~~t~------~ea----~~~~~~Gad~V~v~ 166 (310)
+.| +|.|..-.......+.+.+.. +..+..++++.|++ ++. .++.+.|+|++++-
T Consensus 106 ~~~~~d~iDiEl~~~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~gaDivKia 172 (252)
T d1gqna_ 106 DSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIA 172 (252)
T ss_dssp HHSCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HcCCCceEeccccccHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 678 899953322222333333332 23456677776632 233 23346799998764
|