Citrus Sinensis ID: 021616

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK
ccccccHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccEEEEcccHHHHHHHHHHHHHcccEEEcEEEEEEEEcccccEEEEEEcccccEEEEccEEEEcccHHHHHHccccccHHHHHHccccccccEEEEEEEEcccccccccccccccccEEEEEEccccccEEEEEEcccccccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcc
cccHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccccEEEcHcHHHHHHHHHHHHccccEEEccEEEEEEEcccccEEEEEEcccccEEEEEcEEEEEccHHHHHHHHccccHHHHHHHHccccccEEEEEEEccHHHccccccccccccccEEEEEcccccEEEEEEEEccccccccccccEEEEEEEcccccHHHHcccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccc
MKAAFGKVWKLeqtggsiigGTFKAIQeknkapkqprdprlpkpkgqtvgsfrkgltmlPEAISKRLGSKVKLSWklsgvkkldsgeysltyetpeglvslrsrsvvmTVPSYVAssllrplsvdaagalsqfyyppvaavsvsypkeairteclidgelkgfgqlhprsqgvetlgtiyssslfpnrapaGRVLLLNYIggatnlgilsKKESELVEAVDRDLRKMlinpnakdplvLGVRVWQQAIPQFLVGHLDLLDAAKsslrdngyqglflgGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK
mkaafgkvwkleqtggsiiggTFKAIQEKnkapkqprdprlpkpkgqtvgsfrkgltmlpeaiskrlgskvklswklsgvkkldsgeysltyetpeglvslrsRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGAtnlgilskkeSELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVsnflsqyayk
MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK
****FGKVWKLEQTGGSIIGGTFK*************************************AISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLS*****
MKAAFGKVWKLEQTGGSIIGGT**************************VGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLS*****
MKAAFGKVWKLEQTGGSIIGGTFKAIQ*********************VGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK
*KAAFGKVWKLEQTGGSIIGGTFKAIQEKN***************GQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYA**
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
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MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLPEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNFLSQYAYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query310 2.2.26 [Sep-21-2011]
P55826537 Protoporphyrinogen oxidas yes no 1.0 0.577 0.835 1e-150
Q9AR38536 Protoporphyrinogen oxidas yes no 1.0 0.578 0.803 1e-145
O24163548 Protoporphyrinogen oxidas N/A no 1.0 0.565 0.8 1e-144
P56601471 Protoporphyrinogen oxidas yes no 0.916 0.602 0.299 2e-23
O24164504 Protoporphyrinogen oxidas N/A no 0.916 0.563 0.280 3e-21
Q94IG7531 Protoporphyrinogen oxidas N/A no 0.932 0.544 0.259 1e-20
P32397470 Protoporphyrinogen oxidas yes no 0.912 0.602 0.253 6e-18
P50336477 Protoporphyrinogen oxidas yes no 0.738 0.480 0.261 2e-09
Q60HD5477 Protoporphyrinogen oxidas N/A no 0.761 0.494 0.264 2e-08
P51175477 Protoporphyrinogen oxidas yes no 0.906 0.589 0.258 2e-08
>sp|P55826|PPOC_ARATH Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana GN=PPOX PE=2 SV=1 Back     alignment and function desciption
 Score =  531 bits (1368), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/310 (83%), Positives = 281/310 (90%)

Query: 1   MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLP 60
           MKAAFGKVWKLEQ GGSIIGGTFKAIQE+  APK  RDPRLPKP+GQTVGSFRKGL MLP
Sbjct: 228 MKAAFGKVWKLEQNGGSIIGGTFKAIQERKNAPKAERDPRLPKPQGQTVGSFRKGLRMLP 287

Query: 61  EAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLR 120
           EAIS RLGSKVKLSWKLSG+ KL+SG Y+LTYETP+GLVS++S+SVVMTVPS+VAS LLR
Sbjct: 288 EAISARLGSKVKLSWKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPSHVASGLLR 347

Query: 121 PLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIY 180
           PLS  AA ALS+ YYPPVAAVS+SYPKEAIRTECLIDGELKGFGQLHPR+QGVETLGTIY
Sbjct: 348 PLSESAANALSKLYYPPVAAVSISYPKEAIRTECLIDGELKGFGQLHPRTQGVETLGTIY 407

Query: 181 SSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLG 240
           SSSLFPNRAP GR+LLLNYIGG+TN GILSK E ELVEAVDRDLRKMLI PN+ DPL LG
Sbjct: 408 SSSLFPNRAPPGRILLLNYIGGSTNTGILSKSEGELVEAVDRDLRKMLIKPNSTDPLKLG 467

Query: 241 VRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEV 300
           VRVW QAIPQFLVGH D+LD AKSSL  +GY+GLFLGGNYVAGVALGRCVE AYE A EV
Sbjct: 468 VRVWPQAIPQFLVGHFDILDTAKSSLTSSGYEGLFLGGNYVAGVALGRCVEGAYETAIEV 527

Query: 301 SNFLSQYAYK 310
           +NF+S+YAYK
Sbjct: 528 NNFMSRYAYK 537
Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 4
>sp|Q9AR38|PPOC_ORYSJ Protoporphyrinogen oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=PPOX1 PE=2 SV=1 Back     alignment and function description
>sp|O24163|PPOC_TOBAC Protoporphyrinogen oxidase, chloroplastic OS=Nicotiana tabacum GN=PPXI PE=2 SV=1 Back     alignment and function description
>sp|P56601|PPOX_MYXXA Protoporphyrinogen oxidase OS=Myxococcus xanthus GN=hemY PE=1 SV=1 Back     alignment and function description
>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1 Back     alignment and function description
>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1 Back     alignment and function description
>sp|P32397|PPOX_BACSU Protoporphyrinogen oxidase OS=Bacillus subtilis (strain 168) GN=hemY PE=1 SV=1 Back     alignment and function description
>sp|P50336|PPOX_HUMAN Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX PE=1 SV=1 Back     alignment and function description
>sp|Q60HD5|PPOX_MACFA Protoporphyrinogen oxidase OS=Macaca fascicularis GN=PPOX PE=2 SV=1 Back     alignment and function description
>sp|P51175|PPOX_MOUSE Protoporphyrinogen oxidase OS=Mus musculus GN=Ppox PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
147768434 549 hypothetical protein VITISV_004031 [Viti 1.0 0.564 0.877 1e-155
225437762 549 PREDICTED: protoporphyrinogen oxidase, c 1.0 0.564 0.874 1e-154
356534933 543 PREDICTED: protoporphyrinogen oxidase, c 1.0 0.570 0.829 1e-148
3859604 545 Arabidopsis thaliana protoporphyrinogen 1.0 0.568 0.835 1e-148
15234278 537 protoporphyrinogen oxidase [Arabidopsis 1.0 0.577 0.835 1e-148
14423414 537 Unknown protein [Arabidopsis thaliana] 1.0 0.577 0.832 1e-147
255548233 536 protoporphyrinogen oxidase, chloroplast 1.0 0.578 0.829 1e-147
224068727 543 predicted protein [Populus trichocarpa] 1.0 0.570 0.825 1e-146
224128133 544 predicted protein [Populus trichocarpa] 1.0 0.569 0.819 1e-145
297814161 539 hypothetical protein ARALYDRAFT_912062 [ 1.0 0.575 0.838 1e-145
>gi|147768434|emb|CAN69262.1| hypothetical protein VITISV_004031 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  555 bits (1429), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/310 (87%), Positives = 288/310 (92%)

Query: 1   MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLP 60
           MKAAFGKVWKLEQ GGSIIGGTFKAIQEKN  PK PRDPRLPKPKGQTVGSF+KGL MLP
Sbjct: 240 MKAAFGKVWKLEQKGGSIIGGTFKAIQEKNNTPKPPRDPRLPKPKGQTVGSFKKGLIMLP 299

Query: 61  EAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLR 120
           EAISKRLG KVKLSWKLS + +LD G YSLTYETPEGLVSL+SRSVVMTVPS VASSLL 
Sbjct: 300 EAISKRLGGKVKLSWKLSSIIRLDDGGYSLTYETPEGLVSLQSRSVVMTVPSRVASSLLH 359

Query: 121 PLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIY 180
           PLS  AA ALS+FYYPPVAAVS+SYPKEAIRTECLI+GELKGFGQLHPRSQGVETLGTIY
Sbjct: 360 PLSAVAADALSKFYYPPVAAVSISYPKEAIRTECLIEGELKGFGQLHPRSQGVETLGTIY 419

Query: 181 SSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLG 240
           SSSLFPNRAP GR+LLLNYIGGATN GILSK ESELVEAVDRDLRKMLINPNAKDPLVLG
Sbjct: 420 SSSLFPNRAPPGRILLLNYIGGATNPGILSKTESELVEAVDRDLRKMLINPNAKDPLVLG 479

Query: 241 VRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEV 300
           VRVW QAIPQFL+GHLDLLDAAKS+LRD G+QG+FLGGNYV+GVALGRCVE AYEVA+EV
Sbjct: 480 VRVWPQAIPQFLIGHLDLLDAAKSALRDGGFQGMFLGGNYVSGVALGRCVEGAYEVAAEV 539

Query: 301 SNFLSQYAYK 310
           ++FLSQY YK
Sbjct: 540 ADFLSQYVYK 549

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437762|ref|XP_002273793.1| PREDICTED: protoporphyrinogen oxidase, chloroplastic [Vitis vinifera] gi|297744080|emb|CBI37050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356534933|ref|XP_003536005.1| PREDICTED: protoporphyrinogen oxidase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|3859604|gb|AAC72870.1| Arabidopsis thaliana protoporphyrinogen oxidase precursor (PPO) (SW:P55826) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15234278|ref|NP_192078.1| protoporphyrinogen oxidase [Arabidopsis thaliana] gi|2495184|sp|P55826.1|PPOC_ARATH RecName: Full=Protoporphyrinogen oxidase, chloroplastic; Short=PPO; Flags: Precursor gi|1877018|dbj|BAA11820.1| protoporphyrinogen oxidase [Arabidopsis thaliana] gi|7268212|emb|CAB77739.1| protoporphyrinogen oxidase [Arabidopsis thaliana] gi|56550711|gb|AAV97809.1| At4g01690 [Arabidopsis thaliana] gi|58331767|gb|AAW70381.1| At4g01690 [Arabidopsis thaliana] gi|332656665|gb|AEE82065.1| protoporphyrinogen oxidase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|14423414|gb|AAK62389.1|AF386944_1 Unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255548233|ref|XP_002515173.1| protoporphyrinogen oxidase, chloroplast precursor, putative [Ricinus communis] gi|223545653|gb|EEF47157.1| protoporphyrinogen oxidase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224068727|ref|XP_002302810.1| predicted protein [Populus trichocarpa] gi|222844536|gb|EEE82083.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224128133|ref|XP_002320252.1| predicted protein [Populus trichocarpa] gi|222861025|gb|EEE98567.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297814161|ref|XP_002874964.1| hypothetical protein ARALYDRAFT_912062 [Arabidopsis lyrata subsp. lyrata] gi|297320801|gb|EFH51223.1| hypothetical protein ARALYDRAFT_912062 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query310
TAIR|locus:2133397537 PPOX [Arabidopsis thaliana (ta 1.0 0.577 0.835 2.8e-137
TIGR_CMR|GSU_0012469 GSU_0012 "protoporphyrinogen o 0.922 0.609 0.304 3e-30
UNIPROTKB|Q94IG7531 POX2 "Protoporphyrinogen oxida 0.941 0.549 0.274 2.5e-23
TIGR_CMR|CHY_0481461 CHY_0481 "protoporphyrinogen o 0.906 0.609 0.292 8.7e-21
TAIR|locus:2145603508 HEMG2 [Arabidopsis thaliana (t 0.935 0.570 0.265 2.6e-20
UNIPROTKB|I3LIM9448 PPOX "Uncharacterized protein" 0.903 0.625 0.270 7.2e-14
UNIPROTKB|F1S197477 PPOX "Uncharacterized protein" 0.903 0.587 0.270 8.4e-14
RGD|1310543477 Ppox "protoporphyrinogen oxida 0.906 0.589 0.290 1.5e-13
TIGR_CMR|BA_1072473 BA_1072 "protoporphyrinogen ox 0.816 0.534 0.261 3.2e-12
MGI|MGI:104968477 Ppox "protoporphyrinogen oxida 0.903 0.587 0.266 5.5e-12
TAIR|locus:2133397 PPOX [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1344 (478.2 bits), Expect = 2.8e-137, P = 2.8e-137
 Identities = 259/310 (83%), Positives = 281/310 (90%)

Query:     1 MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLP 60
             MKAAFGKVWKLEQ GGSIIGGTFKAIQE+  APK  RDPRLPKP+GQTVGSFRKGL MLP
Sbjct:   228 MKAAFGKVWKLEQNGGSIIGGTFKAIQERKNAPKAERDPRLPKPQGQTVGSFRKGLRMLP 287

Query:    61 EAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLR 120
             EAIS RLGSKVKLSWKLSG+ KL+SG Y+LTYETP+GLVS++S+SVVMTVPS+VAS LLR
Sbjct:   288 EAISARLGSKVKLSWKLSGITKLESGGYNLTYETPDGLVSVQSKSVVMTVPSHVASGLLR 347

Query:   121 PLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIY 180
             PLS  AA ALS+ YYPPVAAVS+SYPKEAIRTECLIDGELKGFGQLHPR+QGVETLGTIY
Sbjct:   348 PLSESAANALSKLYYPPVAAVSISYPKEAIRTECLIDGELKGFGQLHPRTQGVETLGTIY 407

Query:   181 SSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLG 240
             SSSLFPNRAP GR+LLLNYIGG+TN GILSK E ELVEAVDRDLRKMLI PN+ DPL LG
Sbjct:   408 SSSLFPNRAPPGRILLLNYIGGSTNTGILSKSEGELVEAVDRDLRKMLIKPNSTDPLKLG 467

Query:   241 VRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEV 300
             VRVW QAIPQFLVGH D+LD AKSSL  +GY+GLFLGGNYVAGVALGRCVE AYE A EV
Sbjct:   468 VRVWPQAIPQFLVGHFDILDTAKSSLTSSGYEGLFLGGNYVAGVALGRCVEGAYETAIEV 527

Query:   301 SNFLSQYAYK 310
             +NF+S+YAYK
Sbjct:   528 NNFMSRYAYK 537
GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=IEA;IGI
GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA;TAS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
TIGR_CMR|GSU_0012 GSU_0012 "protoporphyrinogen oxidase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q94IG7 POX2 "Protoporphyrinogen oxidase, chloroplastic/mitochondrial" [Spinacia oleracea (taxid:3562)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0481 CHY_0481 "protoporphyrinogen oxidase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TAIR|locus:2145603 HEMG2 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|I3LIM9 PPOX "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1S197 PPOX "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1310543 Ppox "protoporphyrinogen oxidase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TIGR_CMR|BA_1072 BA_1072 "protoporphyrinogen oxidase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
MGI|MGI:104968 Ppox "protoporphyrinogen oxidase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P55826PPOC_ARATH1, ., 3, ., 3, ., 40.83541.00.5772yesno
Q9AR38PPOC_ORYSJ1, ., 3, ., 3, ., 40.80321.00.5783yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.3.40.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028229001
SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (549 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00032163001
RecName- Full=Ferrochelatase; EC=4.99.1.1;; Catalyzes the ferrous insertion into protoporphyrin [...] (422 aa)
• •  •• 0.976
GSVIVG00002992001
SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)
   • •• 0.975
GSVIVG00037523001
SubName- Full=Chromosome undetermined scaffold_89, whole genome shotgun sequence; (352 aa)
•  • •• 0.974
GSVIVG00019218001
RecName- Full=Ferrochelatase; EC=4.99.1.1;; Catalyzes the ferrous insertion into protoporphyrin [...] (475 aa)
• •• •• 0.973
GSVIVG00022232001
SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (747 aa)
   • •• 0.971
CHLH
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1390 aa)
   • •• 0.964
GSVIVG00010463001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (473 aa)
     •• 0.962
GSVIVG00027816001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (338 aa)
• ••  • 0.875
GSVIVG00029410001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (380 aa)
• ••  • 0.853
GSVIVG00020543001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (504 aa)
  •  •••0.503

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
PLN02576496 PLN02576, PLN02576, protoporphyrinogen oxidase 0.0
TIGR00562462 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase 1e-115
pfam01593444 pfam01593, Amino_oxidase, Flavin containing amine 1e-32
COG1232444 COG1232, HemY, Protoporphyrinogen oxidase [Coenzym 2e-32
PRK11883451 PRK11883, PRK11883, protoporphyrinogen oxidase; Re 8e-31
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase Back     alignment and domain information 
 Score =  511 bits (1317), Expect = 0.0
 Identities = 210/312 (67%), Positives = 246/312 (78%), Gaps = 2/312 (0%)

Query: 1   MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQ-PRDPRLPKPKGQTVGSFRKGLTML 59
           MKAAF K+W LE+ GGSIIGG  KAIQE  K PK  PRDPRLPKPKGQTVGSFR GL  L
Sbjct: 182 MKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQTL 241

Query: 60  PEAISKRLG-SKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSL 118
           P+A++KRLG  KVKL+WK+  + K D G YSLTY+TPEG V++ +++VVMT P YV S +
Sbjct: 242 PDALAKRLGKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEM 301

Query: 119 LRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGT 178
           LRP S  AA AL +FYYPPVAAV+ SYPKEA++ E LIDG L+GFGQLHPR QGV+TLGT
Sbjct: 302 LRPKSPAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGT 361

Query: 179 IYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLV 238
           IYSSSLFP+RAP GRVLLLNYIGG+ N GI S  E ELVEAVDRDLRK+L+ P A  P V
Sbjct: 362 IYSSSLFPDRAPEGRVLLLNYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKV 421

Query: 239 LGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVAS 298
           +GVRVW +AIPQ+L+GHLD+L+AA+   +D G  GLFLGGNY  GVALG+CVES YE A 
Sbjct: 422 VGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFLGGNYRGGVALGKCVESGYEAAD 481

Query: 299 EVSNFLSQYAYK 310
            V ++L   AYK
Sbjct: 482 LVISYLESSAYK 493

Length = 496
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase Back     alignment and domain information
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase Back     alignment and domain information
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 310
KOG1276491 consensus Protoporphyrinogen oxidase [Coenzyme tra 100.0
PLN02576496 protoporphyrinogen oxidase 100.0
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 100.0
COG1232444 HemY Protoporphyrinogen oxidase [Coenzyme metaboli 100.0
PRK12416463 protoporphyrinogen oxidase; Provisional 100.0
PRK11883451 protoporphyrinogen oxidase; Reviewed 100.0
PLN03000 881 amine oxidase 99.94
PLN02328 808 lysine-specific histone demethylase 1 homolog 99.94
PLN02529 738 lysine-specific histone demethylase 1 99.92
PRK07233434 hypothetical protein; Provisional 99.92
COG3380331 Predicted NAD/FAD-dependent oxidoreductase [Genera 99.92
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 99.92
PRK07208479 hypothetical protein; Provisional 99.92
PLN02268435 probable polyamine oxidase 99.91
PLN02976 1713 amine oxidase 99.91
PLN02568539 polyamine oxidase 99.91
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 99.91
PLN02676487 polyamine oxidase 99.9
COG1231450 Monoamine oxidase [Amino acid transport and metabo 99.89
PLN02612567 phytoene desaturase 99.86
TIGR02731453 phytoene_desat phytoene desaturase. Plants and cya 99.84
PLN02487569 zeta-carotene desaturase 99.81
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 99.81
KOG0685498 consensus Flavin-containing amine oxidase [Coenzym 99.79
TIGR02733492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 99.75
KOG0029501 consensus Amine oxidase [Secondary metabolites bio 99.7
TIGR02734502 crtI_fam phytoene desaturase. Phytoene is converte 99.69
TIGR02730493 carot_isom carotene isomerase. Members of this fam 99.63
KOG4254561 consensus Phytoene desaturase [Coenzyme transport 99.24
COG1233487 Phytoene dehydrogenase and related proteins [Secon 99.17
COG2907447 Predicted NAD/FAD-binding protein [General functio 99.0
PF07156368 Prenylcys_lyase: Prenylcysteine lyase; InterPro: I 98.49
COG3349485 Uncharacterized conserved protein [Function unknow 97.95
TIGR00031377 UDP-GALP_mutase UDP-galactopyranose mutase. The ge 97.84
PTZ00363443 rab-GDP dissociation inhibitor; Provisional 97.51
TIGR02352337 thiamin_ThiO glycine oxidase ThiO. This family con 96.82
COG0654387 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and 96.8
PRK07364415 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 96.76
PRK08132 547 FAD-dependent oxidoreductase; Provisional 96.72
PRK08244 493 hypothetical protein; Provisional 96.7
TIGR01984382 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T 96.66
TIGR01988385 Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub 96.55
TIGR02032295 GG-red-SF geranylgeranyl reductase family. This mo 96.48
PRK05732395 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 96.47
PRK08773392 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 96.42
PRK09126392 hypothetical protein; Provisional 96.37
PRK07333403 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 96.28
PRK00711416 D-amino acid dehydrogenase small subunit; Validate 96.17
PRK06185407 hypothetical protein; Provisional 96.14
PRK06834 488 hypothetical protein; Provisional 96.12
PRK06847375 hypothetical protein; Provisional 96.08
PF13738203 Pyr_redox_3: Pyridine nucleotide-disulphide oxidor 96.07
PRK07494388 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 96.07
TIGR03197381 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri 96.0
PRK06996398 hypothetical protein; Provisional 96.0
TIGR03329460 Phn_aa_oxid putative aminophosphonate oxidoreducta 95.97
PRK05714405 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 95.94
PRK06183 538 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va 95.76
PRK08020391 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin 95.73
COG0644396 FixC Dehydrogenases (flavoproteins) [Energy produc 95.72
COG2081408 Predicted flavoproteins [General function predicti 95.61
PRK08849384 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 95.57
PRK11259376 solA N-methyltryptophan oxidase; Provisional 95.56
PRK06184 502 hypothetical protein; Provisional 95.46
PRK08850405 2-octaprenyl-6-methoxyphenol hydroxylase; Validate 95.21
PF01266358 DAO: FAD dependent oxidoreductase; InterPro: IPR00 95.02
PRK01747662 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans 94.93
PRK07190 487 hypothetical protein; Provisional 94.9
PRK08013400 oxidoreductase; Provisional 94.85
PRK06126 545 hypothetical protein; Provisional 94.78
PRK07608388 ubiquinone biosynthesis hydroxylase family protein 94.65
PF03486409 HI0933_like: HI0933-like protein; InterPro: IPR004 94.57
PRK07045388 putative monooxygenase; Reviewed 94.38
PF05834374 Lycopene_cycl: Lycopene cyclase protein; InterPro: 94.25
PF13454156 NAD_binding_9: FAD-NAD(P)-binding 93.57
PF06039488 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro 93.37
PRK10015429 oxidoreductase; Provisional 93.27
TIGR03862376 flavo_PP4765 uncharacterized flavoprotein, PP_4765 93.18
COG0665387 DadA Glycine/D-amino acid oxidases (deaminating) [ 93.04
COG0579429 Predicted dehydrogenase [General function predicti 93.0
TIGR01989437 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T 92.34
PF00743 531 FMO-like: Flavin-binding monooxygenase-like; Inter 91.97
PRK06753373 hypothetical protein; Provisional 91.14
PRK06617374 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 90.89
PRK07538413 hypothetical protein; Provisional 90.65
TIGR01320483 mal_quin_oxido malate:quinone-oxidoreductase. This 90.6
TIGR03219414 salicylate_mono salicylate 1-monooxygenase. Member 90.58
PLN02172461 flavin-containing monooxygenase FMO GS-OX 90.49
PTZ00383497 malate:quinone oxidoreductase; Provisional 90.47
PLN02463447 lycopene beta cyclase 90.26
PRK07236386 hypothetical protein; Provisional 90.22
PRK05329422 anaerobic glycerol-3-phosphate dehydrogenase subun 89.89
PRK11728393 hydroxyglutarate oxidase; Provisional 89.71
PRK13339497 malate:quinone oxidoreductase; Reviewed 89.44
TIGR01790388 carotene-cycl lycopene cyclase family protein. Thi 89.44
TIGR02485432 CobZ_N-term precorrin 3B synthase CobZ. CobZ is es 89.34
PRK09897 534 hypothetical protein; Provisional 88.73
TIGR01373407 soxB sarcosine oxidase, beta subunit family, heter 88.46
PRK05257494 malate:quinone oxidoreductase; Validated 88.45
COG2509486 Uncharacterized FAD-dependent dehydrogenases [Gene 87.76
KOG2404477 consensus Fumarate reductase, flavoprotein subunit 87.68
TIGR00275400 flavoprotein, HI0933 family. The model when search 87.04
TIGR01377380 soxA_mon sarcosine oxidase, monomeric form. Sarcos 86.78
PRK06175433 L-aspartate oxidase; Provisional 86.76
PRK12409410 D-amino acid dehydrogenase small subunit; Provisio 86.75
PRK07588391 hypothetical protein; Provisional 86.73
PRK12845564 3-ketosteroid-delta-1-dehydrogenase; Reviewed 86.72
PRK08243392 4-hydroxybenzoate 3-monooxygenase; Validated 86.7
PRK05868372 hypothetical protein; Validated 86.48
PF13434341 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi 85.94
PRK06475400 salicylate hydroxylase; Provisional 85.92
TIGR03378419 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase 85.9
PRK06134 581 putative FAD-binding dehydrogenase; Reviewed 85.78
TIGR02053463 MerA mercuric reductase. This model represents the 85.47
PF00890417 FAD_binding_2: FAD binding domain of the Pfam fami 85.18
PRK06416462 dihydrolipoamide dehydrogenase; Reviewed 84.79
PRK06370463 mercuric reductase; Validated 84.75
PRK08274466 tricarballylate dehydrogenase; Validated 84.67
PF00996438 GDI: GDP dissociation inhibitor; InterPro: IPR0182 83.52
PRK04965377 NADH:flavorubredoxin oxidoreductase; Provisional 83.2
PF0007080 Pyr_redox: Pyridine nucleotide-disulphide oxidored 82.39
PRK08294 634 phenol 2-monooxygenase; Provisional 82.39
TIGR01292300 TRX_reduct thioredoxin-disulfide reductase. This m 82.21
PF13434341 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi 82.01
PRK08163396 salicylate hydroxylase; Provisional 81.63
PRK11445351 putative oxidoreductase; Provisional 81.38
TIGR03862376 flavo_PP4765 uncharacterized flavoprotein, PP_4765 81.17
PRK06116450 glutathione reductase; Validated 81.01
PRK07818466 dihydrolipoamide dehydrogenase; Reviewed 80.85
COG2081408 Predicted flavoproteins [General function predicti 80.79
PLN02927 668 antheraxanthin epoxidase/zeaxanthin epoxidase 80.22
PRK07121492 hypothetical protein; Validated 80.1
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-44  Score=316.46  Aligned_cols=291  Identities=42%  Similarity=0.639  Sum_probs=255.9

Q ss_pred             CccccchHHHHHHhcCcHHHHHHHhHhhhccCCCCCCCCCCC-CCCCceeeeccchhhHHHHHHHHHhcc---ceeeCce
Q 021616            1 MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLP-KPKGQTVGSFRKGLTMLPEAISKRLGS---KVKLSWK   76 (310)
Q Consensus         1 ~~~~~p~~~~~e~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~gG~~~L~~~L~~~l~~---~i~~~~~   76 (310)
                      ||++||.||+.|||||||+.|+++.++.+++.+++.++.+.+ +++.+..|.++||++.|+++|.+.|+.   .|.++.+
T Consensus       192 mk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~  271 (491)
T KOG1276|consen  192 MKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLK  271 (491)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccc
Confidence            689999999999999999999999999877776665554444 888999999999999999999999974   5789999


Q ss_pred             eeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCCHHHHhhccCCCCCCEEEEEEEecCCcccccccc
Q 021616           77 LSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLI  156 (310)
Q Consensus        77 V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~  156 (310)
                      +..+.....|.|.+++.+.+++..+..++++.|.|+..++.+++...+.+..++..++|.++.+|++.|+.+...   + 
T Consensus       272 ~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~a~ll~~~~~sls~~L~ei~y~~V~vVn~~yp~~~~~---~-  347 (491)
T KOG1276|consen  272 LSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKLAKLLRGLQNSLSNALSEIPYVPVAVVNTYYPKEKID---L-  347 (491)
T ss_pred             cccccccccCCceeEeEcCCCceeeeccccccccchHHhhhhccccchhhhhhhhcCCCCceEEEEEeccCcccc---c-
Confidence            999988876669999987888667788888899999999999998888889999999999999999999986432   1 


Q ss_pred             CCCcCcceEEec--CCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCCCC--CCCCCHHHHHHHHHHHHHHHhCCCC
Q 021616          157 DGELKGFGQLHP--RSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLG--ILSKKESELVEAVDRDLRKMLINPN  232 (310)
Q Consensus       157 ~~~~~g~g~l~~--~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~~~--~~~~~~eel~~~~~~~l~~~~~~~~  232 (310)
                        +++|||+|+|  ..++.+.+|++|||..||.++|.+  .+++|++|.|...  +...+.|++++.+.++|.+++++. 
T Consensus       348 --pl~GFG~LvPs~~~~~~~~LG~ifdS~~Fp~~~~s~--~vtvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi~-  422 (491)
T KOG1276|consen  348 --PLQGFGLLVPSEPKNGFKTLGTIFDSMLFPDRSPSP--KVTVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGIS-  422 (491)
T ss_pred             --ccccceeeccCCCCCCCceeEEEeecccCCCCCCCc--eEEEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCCC-
Confidence              6899999999  677889999999999999887755  6788888877554  346789999999999999999987 


Q ss_pred             CCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCchhHHHHHHHHHHHHHH
Q 021616          233 AKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVS  301 (310)
Q Consensus       233 ~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~  301 (310)
                       .+|....++-|++|+|||++||.+.++.++..+.+....+|++||+|+.|+++++||.+|+++|.+++
T Consensus       423 -~~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l~l~G~~y~Gv~vgdcI~sg~~~A~~v~  490 (491)
T KOG1276|consen  423 -NKPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGLFLGGNHYGGVSVGDCIESGRKTAVEVI  490 (491)
T ss_pred             -CCcccccceehhhcccceecchHHHHHHHHHHHHhCCCCceEeeccccCCCChhHHHHhhHHHHHhhc
Confidence             46998889999999999999999999999999887544689999999999999999999999998875

>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>PLN03000 amine oxidase Back     alignment and domain information
>PLN02328 lysine-specific histone demethylase 1 homolog Back     alignment and domain information
>PLN02529 lysine-specific histone demethylase 1 Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>PRK07208 hypothetical protein; Provisional Back     alignment and domain information
>PLN02268 probable polyamine oxidase Back     alignment and domain information
>PLN02976 amine oxidase Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>COG1231 Monoamine oxidase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>TIGR02731 phytoene_desat phytoene desaturase Back     alignment and domain information
>PLN02487 zeta-carotene desaturase Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] Back     alignment and domain information
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only] Back     alignment and domain information
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1 Back     alignment and domain information
>COG3349 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase Back     alignment and domain information
>PTZ00363 rab-GDP dissociation inhibitor; Provisional Back     alignment and domain information
>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK08132 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PRK08244 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>TIGR02032 GG-red-SF geranylgeranyl reductase family Back     alignment and domain information
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Back     alignment and domain information
>PRK09126 hypothetical protein; Provisional Back     alignment and domain information
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PRK00711 D-amino acid dehydrogenase small subunit; Validated Back     alignment and domain information
>PRK06185 hypothetical protein; Provisional Back     alignment and domain information
>PRK06834 hypothetical protein; Provisional Back     alignment and domain information
>PRK06847 hypothetical protein; Provisional Back     alignment and domain information
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A Back     alignment and domain information
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain Back     alignment and domain information
>PRK06996 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase Back     alignment and domain information
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Back     alignment and domain information
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Back     alignment and domain information
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] Back     alignment and domain information
>COG2081 Predicted flavoproteins [General function prediction only] Back     alignment and domain information
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK11259 solA N-methyltryptophan oxidase; Provisional Back     alignment and domain information
>PRK06184 hypothetical protein; Provisional Back     alignment and domain information
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Back     alignment and domain information
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 Back     alignment and domain information
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Back     alignment and domain information
>PRK07190 hypothetical protein; Provisional Back     alignment and domain information
>PRK08013 oxidoreductase; Provisional Back     alignment and domain information
>PRK06126 hypothetical protein; Provisional Back     alignment and domain information
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional Back     alignment and domain information
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases Back     alignment and domain information
>PRK07045 putative monooxygenase; Reviewed Back     alignment and domain information
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins Back     alignment and domain information
>PF13454 NAD_binding_9: FAD-NAD(P)-binding Back     alignment and domain information
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle Back     alignment and domain information
>PRK10015 oxidoreductase; Provisional Back     alignment and domain information
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family Back     alignment and domain information
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] Back     alignment and domain information
>COG0579 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 Back     alignment and domain information
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] Back     alignment and domain information
>PRK06753 hypothetical protein; Provisional Back     alignment and domain information
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK07538 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase Back     alignment and domain information
>TIGR03219 salicylate_mono salicylate 1-monooxygenase Back     alignment and domain information
>PLN02172 flavin-containing monooxygenase FMO GS-OX Back     alignment and domain information
>PTZ00383 malate:quinone oxidoreductase; Provisional Back     alignment and domain information
>PLN02463 lycopene beta cyclase Back     alignment and domain information
>PRK07236 hypothetical protein; Provisional Back     alignment and domain information
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated Back     alignment and domain information
>PRK11728 hydroxyglutarate oxidase; Provisional Back     alignment and domain information
>PRK13339 malate:quinone oxidoreductase; Reviewed Back     alignment and domain information
>TIGR01790 carotene-cycl lycopene cyclase family protein Back     alignment and domain information
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ Back     alignment and domain information
>PRK09897 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form Back     alignment and domain information
>PRK05257 malate:quinone oxidoreductase; Validated Back     alignment and domain information
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] Back     alignment and domain information
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] Back     alignment and domain information
>TIGR00275 flavoprotein, HI0933 family Back     alignment and domain information
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form Back     alignment and domain information
>PRK06175 L-aspartate oxidase; Provisional Back     alignment and domain information
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional Back     alignment and domain information
>PRK07588 hypothetical protein; Provisional Back     alignment and domain information
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed Back     alignment and domain information
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated Back     alignment and domain information
>PRK05868 hypothetical protein; Validated Back     alignment and domain information
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B Back     alignment and domain information
>PRK06475 salicylate hydroxylase; Provisional Back     alignment and domain information
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit Back     alignment and domain information
>PRK06134 putative FAD-binding dehydrogenase; Reviewed Back     alignment and domain information
>TIGR02053 MerA mercuric reductase Back     alignment and domain information
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family Back     alignment and domain information
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed Back     alignment and domain information
>PRK06370 mercuric reductase; Validated Back     alignment and domain information
>PRK08274 tricarballylate dehydrogenase; Validated Back     alignment and domain information
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function Back     alignment and domain information
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional Back     alignment and domain information
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] Back     alignment and domain information
>PRK08294 phenol 2-monooxygenase; Provisional Back     alignment and domain information
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase Back     alignment and domain information
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B Back     alignment and domain information
>PRK08163 salicylate hydroxylase; Provisional Back     alignment and domain information
>PRK11445 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family Back     alignment and domain information
>PRK06116 glutathione reductase; Validated Back     alignment and domain information
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed Back     alignment and domain information
>COG2081 Predicted flavoproteins [General function prediction only] Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>PRK07121 hypothetical protein; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
2ivd_A478 Structure Of Protoporphyrinogen Oxidase From Myxoco 1e-24
1sez_A504 Crystal Structure Of Protoporphyrinogen Ix Oxidase 8e-20
3i6d_A470 Crystal Structure Of Ppo From Bacillus Subtilis Wit 4e-19
3nks_A477 Structure Of Human Protoporphyrinogen Ix Oxidase Le 1e-10
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus Xanthus With Acifluorfen Length = 478 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 142/301 (47%), Gaps = 17/301 (5%)
Query: 1   MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPK-GQTVGSFRKGLTML 59
           + A F  + K+E+   S+I G  +A     KA +Q   P    PK    + +F  GL +L
Sbjct: 185 VAATFPMLVKMEREHRSLILGAIRA----QKAQRQAALPAGTAPKLSGALSTFDGGLQVL 240
Query: 60  PEAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLL 119
            +A++  LG    +  ++ G+ + D G + L  E       L    VV+  P++  + LL
Sbjct: 241 IDALAASLGDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVAQVVLAAPAHATAKLL 299
Query: 120 RPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTI 179
           RPL    A  ++   Y P+A V + +    +           GFG L P  +    LG I
Sbjct: 300 RPLDDALAALVAGIAYAPIAVVHLGFDAGTLPAP-------DGFGFLVPAEEQRRMLGAI 352
Query: 180 YSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVL 239
           ++S+ FP RA  GRVL    +GGA   G++ + E  L  A+ R+  K L    A+ P   
Sbjct: 353 HASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALA-ALAREELKALAGVTAR-PSFT 410
Query: 240 GVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASE 299
            V  W   IPQ+ +GHL+ + A  ++L+     GL L GN   GV L  C+ +A ++A  
Sbjct: 411 RVFRWPLGIPQYNLGHLERVAAIDAALQR--LPGLHLIGNAYKGVGLNDCIRNAAQLADA 468
Query: 300 V 300
           +
Sbjct: 469 L 469
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase Length = 504 Back     alignment and structure
>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af Length = 470 Back     alignment and structure
>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase Length = 477 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query310
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 4e-69
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 5e-62
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 2e-58
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 4e-57
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 2e-55
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 8e-11
3utf_A513 UDP-galactopyranose mutase; nucleotide binding, fl 2e-09
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 5e-09
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 1e-06
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 2e-05
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 2e-05
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 3e-05
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 4e-05
2xag_A852 Lysine-specific histone demethylase 1; amine oxida 6e-04
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 9e-04
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478 Back     alignment and structure
 Score =  221 bits (565), Expect = 4e-69
 Identities = 82/308 (26%), Positives = 137/308 (44%), Gaps = 15/308 (4%)

Query: 1   MKAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRLPKPKGQTVGSFRKGLTMLP 60
           + A F  + K+E+   S+I G   AI+ +    +              + +F  GL +L 
Sbjct: 185 VAATFPMLVKMEREHRSLILG---AIRAQKAQRQAALPAGTAPKLSGALSTFDGGLQVLI 241

Query: 61  EAISKRLGSKVKLSWKLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLR 120
           +A++  LG    +  ++ G+ + D G + L  E       L    VV+  P++  + LLR
Sbjct: 242 DALAASLGDAAHVGARVEGLAREDGG-WRLIIEEHGRRAELSVAQVVLAAPAHATAKLLR 300

Query: 121 PLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIY 180
           PL    A  ++   Y P+A V + +    +           GFG L P  +    LG I+
Sbjct: 301 PLDDALAALVAGIAYAPIAVVHLGFDAGTLP-------APDGFGFLVPAEEQRRMLGAIH 353

Query: 181 SSSLFPNRAPAGRVLLLNYIGGATNLGILSKKESELVEAVDRDLRKMLINPNAKDPLVLG 240
           +S+ FP RA  GRVL    +GGA   G++ + E  L      +L+ +        P    
Sbjct: 354 ASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDEDALAALAREELKALA--GVTARPSFTR 411

Query: 241 VRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEV 300
           V  W   IPQ+ +GHL+ + A  ++L+     GL L GN   GV L  C+ +A ++A  +
Sbjct: 412 VFRWPLGIPQYNLGHLERVAAIDAALQR--LPGLHLIGNAYKGVGLNDCIRNAAQLADAL 469

Query: 301 SNFLSQYA 308
               + +A
Sbjct: 470 VAGNTSHA 477
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470 Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504 Back     alignment and structure
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477 Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475 Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484 Back     alignment and structure
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513 Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489 Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520 Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662 Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498 Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342 Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
3nks_A477 Protoporphyrinogen oxidase; FAD containing protein 100.0
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 100.0
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 100.0
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 100.0
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 100.0
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 99.97
4dsg_A484 UDP-galactopyranose mutase; rossmann fold, flavin 99.95
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 99.94
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 99.94
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 99.94
4gde_A513 UDP-galactopyranose mutase; flavin adenine dinucle 99.93
2xag_A852 Lysine-specific histone demethylase 1; amine oxida 99.93
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 99.93
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 99.92
2yg5_A453 Putrescine oxidase; oxidoreductase, flavin; HET: F 99.91
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 99.91
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 99.9
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 99.9
4gut_A776 Lysine-specific histone demethylase 1B; histone de 99.89
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 99.89
1rsg_A516 FMS1 protein; FAD binding motif, oxidoreductase; H 99.82
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 99.81
2b9w_A424 Putative aminooxidase; isomerase, conjugated linol 99.78
3ayj_A721 Pro-enzyme of L-phenylalanine oxidase; amino acid 99.73
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 99.72
2bi7_A384 UDP-galactopyranose mutase; FAD, flavoprotein, iso 99.48
1v0j_A399 UDP-galactopyranose mutase; flavoprotein, isomeras 99.47
1i8t_A367 UDP-galactopyranose mutase; rossman fold, FAD, con 99.42
2e1m_C181 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 99.01
2bcg_G453 Secretory pathway GDP dissociation inhibitor; RABG 98.75
3hdq_A397 UDP-galactopyranose mutase; substrate and inhibito 98.69
1d5t_A433 Guanine nucleotide dissociation inhibitor; ultra-h 98.61
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 98.35
1vg0_A650 RAB proteins geranylgeranyltransferase component A 97.99
2e1m_B130 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 97.74
3p1w_A475 Rabgdi protein; GDI RAB, malaria, structural genom 97.24
4hb9_A412 Similarities with probable monooxygenase; flavin, 97.11
3ihg_A 535 RDME; flavoenzyme, anthracycline, polyketide biosy 97.02
2e1m_A376 L-glutamate oxidase; L-amino acid oxidase, FAD, L- 96.88
3oz2_A397 Digeranylgeranylglycerophospholipid reductase; str 96.63
3dje_A438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 96.61
3fmw_A 570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 96.56
2qa1_A 500 PGAE, polyketide oxygenase PGAE; FAD, angucycline, 96.43
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 96.36
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 96.36
2qa2_A 499 CABE, polyketide oxygenase CABE; FAD, angucycline, 96.07
1ryi_A382 Glycine oxidase; flavoprotein, protein-inhibitor c 96.07
3atr_A453 Conserved archaeal protein; saturating double bond 95.9
3cgv_A397 Geranylgeranyl reductase related protein; NP_39399 94.83
2gmh_A 584 Electron transfer flavoprotein-ubiquinone oxidored 93.67
2dkh_A 639 3-hydroxybenzoate hydroxylase; flavoprotein, monoo 93.67
3nyc_A381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 93.35
3dme_A369 Conserved exported protein; structural genomics, P 92.88
3pvc_A689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 92.73
3ps9_A676 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 92.67
3v76_A417 Flavoprotein; structural genomics, PSI-biology, NE 92.11
2i0z_A447 NAD(FAD)-utilizing dehydrogenases; structural geno 91.65
3lxd_A415 FAD-dependent pyridine nucleotide-disulphide oxido 91.54
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 91.37
2uzz_A372 N-methyl-L-tryptophan oxidase; N-methyltryptophan 91.36
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 91.26
2gf3_A389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 91.22
2oln_A397 NIKD protein; flavoprotein, rossmann fold, oxidore 91.16
2gv8_A447 Monooxygenase; FMO, FAD, NADPH, cofactor complex, 90.98
3lad_A476 Dihydrolipoamide dehydrogenase; oxidoreductase; HE 90.97
3fg2_P404 Putative rubredoxin reductase; ferredoxin reductas 90.73
2x3n_A399 Probable FAD-dependent monooxygenase; oxidoreducta 90.71
3fpz_A326 Thiazole biosynthetic enzyme; FAD, mitochondrion, 90.66
1xdi_A499 RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun 90.58
4at0_A510 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore 90.56
3o0h_A484 Glutathione reductase; ssgcid, structur genomics, 90.49
2ywl_A180 Thioredoxin reductase related protein; uncharacter 90.46
2gag_B405 Heterotetrameric sarcosine oxidase beta-subunit; f 90.45
4a9w_A357 Monooxygenase; baeyer-villiger, FAD, oxidoreductas 90.35
1y56_B382 Sarcosine oxidase; dehydrogenase, protein-protein 90.23
3iwa_A472 FAD-dependent pyridine nucleotide-disulphide oxido 89.9
3d1c_A369 Flavin-containing putative monooxygenase; NP_37310 89.75
3nlc_A549 Uncharacterized protein VP0956; FAD-binding protei 89.71
2v3a_A384 Rubredoxin reductase; alkane degradation, NADH oxi 89.4
3ef6_A410 Toluene 1,2-dioxygenase system ferredoxin--NAD(+) 89.15
1fec_A490 Trypanothione reductase; redox-active center, oxid 89.04
2wpf_A495 Trypanothione reductase; oxidoreductase, trypanoso 88.91
2gqf_A401 Hypothetical protein HI0933; structural genomics, 88.84
1ges_A450 Glutathione reductase; oxidoreductase(flavoenzyme) 88.7
1pn0_A 665 Phenol 2-monooxygenase; two dimers, TLS refinement 88.57
2yqu_A455 2-oxoglutarate dehydrogenase E3 component; lipoami 88.16
4dna_A463 Probable glutathione reductase; structural genomic 87.82
2qae_A468 Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin 87.65
3gwf_A 540 Cyclohexanone monooxygenase; flavoprotein biocatal 87.6
1y0p_A571 Fumarate reductase flavoprotein subunit; flavocyto 87.56
3s5w_A463 L-ornithine 5-monooxygenase; class B flavin depend 87.55
3r9u_A315 Thioredoxin reductase; structural genomics, center 87.54
3oc4_A452 Oxidoreductase, pyridine nucleotide-disulfide FAM; 87.52
4ap3_A 549 Steroid monooxygenase; oxidoreductase, baeyer-vill 87.37
1qo8_A566 Flavocytochrome C3 fumarate reductase; oxidoreduct 87.32
1m6i_A493 Programmed cell death protein 8; apoptosis, AIF, o 86.85
1w4x_A 542 Phenylacetone monooxygenase; baeyer-villiger, FAD; 86.53
2hqm_A479 GR, grase, glutathione reductase; glutathione redu 86.4
1d4d_A572 Flavocytochrome C fumarate reductase; oxidoreducta 86.34
1mo9_A523 ORF3; nucleotide binding motifs, nucleotide bindin 86.29
3e1t_A 512 Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro 86.22
2r9z_A463 Glutathione amide reductase; NAD, FAD, substrate s 86.17
1zmd_A474 Dihydrolipoyl dehydrogenase; lipoamide dehydrogena 85.85
3uox_A 545 Otemo; baeyer-villiger monooxygenase, oxidoreducta 85.82
3lzw_A332 Ferredoxin--NADP reductase 2; ferredoxin reductase 85.79
3itj_A338 Thioredoxin reductase 1; disulfide B flavoprotein, 85.75
2a8x_A464 Dihydrolipoyl dehydrogenase, E3 component of alpha 85.68
2zbw_A335 Thioredoxin reductase; redox protein, oxidoreducta 85.64
3ab1_A360 Ferredoxin--NADP reductase; oxidoreductase, electr 85.59
2xve_A 464 Flavin-containing monooxygenase; oxidoreductase; H 85.43
1onf_A500 GR, grase, glutathione reductase; oxidoreductase; 85.2
1q1r_A431 Putidaredoxin reductase; glutathione reductase fol 85.02
3axb_A448 Putative oxidoreductase; dinucleotide-binding fold 84.89
2r0c_A 549 REBC; flavin adenine dinucleotide, monooxygenase, 84.82
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 84.49
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 84.32
1dxl_A470 Dihydrolipoamide dehydrogenase; oxidoreductase, mu 84.04
3l8k_A466 Dihydrolipoyl dehydrogenase; redox-active center, 83.65
3s5w_A463 L-ornithine 5-monooxygenase; class B flavin depend 83.59
4a5l_A314 Thioredoxin reductase; oxidoreductase, redox metab 83.56
3da1_A 561 Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 83.36
2cul_A232 Glucose-inhibited division protein A-related PROT 83.19
1ebd_A455 E3BD, dihydrolipoamide dehydrogenase; redox-active 83.14
1trb_A320 Thioredoxin reductase; oxidoreductase(flavoenzyme) 83.03
3urh_A491 Dihydrolipoyl dehydrogenase; PSI-biology, structur 82.99
3ic9_A492 Dihydrolipoamide dehydrogenase; APC62701, colwelli 82.93
2eq6_A464 Pyruvate dehydrogenase complex, dihydrolipoamide d 82.91
2e4g_A 550 Tryptophan halogenase; flavin-binding, rebeccamyci 82.59
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 82.49
3ntd_A 565 FAD-dependent pyridine nucleotide-disulphide oxido 81.97
3i3l_A 591 Alkylhalidase CMLS; flavin-dependent halogenase, c 81.48
2cdu_A452 NADPH oxidase; flavoenzyme, oxidoreductase; HET: F 81.41
2rgh_A 571 Alpha-glycerophosphate oxidase; flavoprotein oxida 81.1
1fl2_A310 Alkyl hydroperoxide reductase subunit F; reactive 81.01
1v59_A478 Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog 80.53
2weu_A511 Tryptophan 5-halogenase; regioselectivity, antifun 80.46
3klj_A385 NAD(FAD)-dependent dehydrogenase, NIRB-family (N- 80.44
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.9e-37  Score=291.44  Aligned_cols=282  Identities=26%  Similarity=0.367  Sum_probs=229.8

Q ss_pred             ccccchHHHHHHhcCcHHHHHHHhHhhhccCCCCCCCCCC---CCCCCceeeeccchhhHHHHHHHHHhc---cceeeCc
Q 021616            2 KAAFGKVWKLEQTGGSIIGGTFKAIQEKNKAPKQPRDPRL---PKPKGQTVGSFRKGLTMLPEAISKRLG---SKVKLSW   75 (310)
Q Consensus         2 ~~~~p~~~~~e~~~gs~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~gG~~~L~~~L~~~l~---~~i~~~~   75 (310)
                      ++++|.++++|+++||++.+++.....+.   .  .+..+   ....++.+++++|||++|+++|++.+.   ++|++|+
T Consensus       181 ~~~~~~l~~~e~~~gsl~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~  255 (477)
T 3nks_A          181 RSCFPSLFQAEQTHRSILLGLLLGAGRTP---Q--PDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQ  255 (477)
T ss_dssp             HHHCHHHHHHHHHHSCHHHHHHHC--------C--CCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhccccc---C--CchhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCC
Confidence            46789999999999999999986532110   0  00000   001234579999999999999999884   5899999


Q ss_pred             eeeeEEEcCCCcEEEEEECCCCeEEEecCEEEEcCCchHHHhccCCCCHHHHhhccCCCCCCEEEEEEEecCCccccccc
Q 021616           76 KLSGVKKLDSGEYSLTYETPEGLVSLRSRSVVMTVPSYVASSLLRPLSVDAAGALSQFYYPPVAAVSVSYPKEAIRTECL  155 (310)
Q Consensus        76 ~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~  155 (310)
                      +|++|+.++++.|.|++  .++  ++.||+||+|+|++.+..|+++..+...+.+++++|.++.+|++.|++++|+    
T Consensus       256 ~V~~i~~~~~~~~~v~~--~~~--~~~ad~vv~a~p~~~~~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~~~~----  327 (477)
T 3nks_A          256 PVCGLSLQAEGRWKVSL--RDS--SLEADHVISAIPASVLSELLPAEAAPLARALSAITAVSVAVVNLQYQGAHLP----  327 (477)
T ss_dssp             CCCEEEECGGGCEEEEC--SSC--EEEESEEEECSCHHHHHHHSCGGGHHHHHHHHTCCEEEEEEEEEEETTCCCS----
T ss_pred             EEEEEEEcCCceEEEEE--CCe--EEEcCEEEECCCHHHHHHhccccCHHHHHHHhcCCCCcEEEEEEEECCCCCC----
Confidence            99999988764477753  344  6899999999999999999987777788889999999999999999988763    


Q ss_pred             cCCCcCcceEEecCCCCCceeEEEeccCCCCCCC-CCCcEEEEEEecCCCCCCC----CCCCHHHHHHHHHHHHHHHhCC
Q 021616          156 IDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRA-PAGRVLLLNYIGGATNLGI----LSKKESELVEAVDRDLRKMLIN  230 (310)
Q Consensus       156 ~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~-p~g~~~l~~~~~g~~~~~~----~~~~~eel~~~~~~~l~~~~~~  230 (310)
                          .++||+++|..++..+++++|+|.++|++. +++..++++++++.+...+    ..++++++++.++++|++++|.
T Consensus       328 ----~~~~g~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~l~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~  403 (477)
T 3nks_A          328 ----VQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSPPGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGL  403 (477)
T ss_dssp             ----SCSSEEECCTTTCSSEEEEECHHHHCGGGSTTTTCEEEEEEECHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHCC
T ss_pred             ----CCCceEEccCCCCCCceEEEEeccccCCCCCCCCceEEEEEECCccccccccccCCCCHHHHHHHHHHHHHHHhCC
Confidence                467899998877788899999999998643 3477889999987654322    3579999999999999999987


Q ss_pred             CCCCCCcEEEEEecCCCCCCCCCChHHHHHHHHHHhhhcCCCCeEEeecccCCCchhHHHHHHHHHHHHHHHH
Q 021616          231 PNAKDPLVLGVRVWQQAIPQFLVGHLDLLDAAKSSLRDNGYQGLFLGGNYVAGVALGRCVESAYEVASEVSNF  303 (310)
Q Consensus       231 ~~~~~p~~~~~~rw~~a~p~~~~g~~~~~~~~~~~~~~~~~~~l~~aG~~~~g~gv~~ai~sG~~aA~~i~~~  303 (310)
                      .  ..|.+..++||++++|+|++||..++..+++.+.. ..++|++||||+.|.||++|+.||+++|++|+..
T Consensus       404 ~--~~~~~~~v~rw~~a~p~~~~g~~~~~~~~~~~l~~-~~~~l~l~G~~~~G~gv~~a~~sg~~aA~~il~~  473 (477)
T 3nks_A          404 K--EMPSHCLVHLHKNCIPQYTLGHWQKLESARQFLTA-HRLPLTLAGASYEGVAVNDCIESGRQAAVSVLGT  473 (477)
T ss_dssp             C--SCCSEEEEEEEEEEEECCBTTHHHHHHHHHHHHHH-TTCSEEECSTTTSCCSHHHHHHHHHHHHHHHHHC
T ss_pred             C--CCCcEEEEEEcCCccCCCCCCHHHHHHHHHHHHHh-cCCCEEEEccCCCCCcHHHHHHHHHHHHHHHHhc
Confidence            5  57889999999999999999999999888877764 3468999999999999999999999999999864
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Back     alignment and structure
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Back     alignment and structure
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Back     alignment and structure
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Back     alignment and structure
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Back     alignment and structure
>2e1m_C L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Back     alignment and structure
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Back     alignment and structure
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Back     alignment and structure
>2e1m_B L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Back     alignment and structure
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Back     alignment and structure
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Back     alignment and structure
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Back     alignment and structure
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Back     alignment and structure
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Back     alignment and structure
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Back     alignment and structure
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Back     alignment and structure
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Back     alignment and structure
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Back     alignment and structure
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Back     alignment and structure
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Back     alignment and structure
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Back     alignment and structure
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Back     alignment and structure
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Back     alignment and structure
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Back     alignment and structure
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Back     alignment and structure
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} Back     alignment and structure
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Back     alignment and structure
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Back     alignment and structure
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Back     alignment and structure
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Back     alignment and structure
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Back     alignment and structure
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Back     alignment and structure
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Back     alignment and structure
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Back     alignment and structure
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Back     alignment and structure
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* Back     alignment and structure
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Back     alignment and structure
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Back     alignment and structure
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Back     alignment and structure
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Back     alignment and structure
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Back     alignment and structure
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Back     alignment and structure
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Back     alignment and structure
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Back     alignment and structure
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Back     alignment and structure
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Back     alignment and structure
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Back     alignment and structure
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Back     alignment and structure
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Back     alignment and structure
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Back     alignment and structure
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Back     alignment and structure
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Back     alignment and structure
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Back     alignment and structure
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Back     alignment and structure
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Back     alignment and structure
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Back     alignment and structure
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Back     alignment and structure
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Back     alignment and structure
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Back     alignment and structure
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Back     alignment and structure
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Back     alignment and structure
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Back     alignment and structure
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Back     alignment and structure
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Back     alignment and structure
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Back     alignment and structure
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Back     alignment and structure
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Back     alignment and structure
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Back     alignment and structure
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Back     alignment and structure
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* Back     alignment and structure
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Back     alignment and structure
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 Back     alignment and structure
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Back     alignment and structure
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Back     alignment and structure
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Back     alignment and structure
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Back     alignment and structure
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Back     alignment and structure
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Back     alignment and structure
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Back     alignment and structure
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Back     alignment and structure
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Back     alignment and structure
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Back     alignment and structure
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Back     alignment and structure
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Back     alignment and structure
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 310
d2ivda2108 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {M 1e-27
d1seza2112 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {T 2e-24
d2ivda1347 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox 1e-08
d2ivda1347 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox 0.003
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 108 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score =  101 bits (253), Expect = 1e-27
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 135 YPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRV 194
           Y P+A V + +    +           GFG L P  +    LG I++S+ FP RA  GRV
Sbjct: 2   YAPIAVVHLGFDAGTLPA-------PDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRV 54

Query: 195 LLLNYIGGATNLGILSKKESELVEAVDRDLRKML-INPNAKDPLVLGVRVWQQAIPQ 250
           L    +GGA   G++ + E  L      +L+ +  +      P    V  W   IPQ
Sbjct: 55  LYSCMVGGARQPGLVEQDEDALAALAREELKALAGVTA---RPSFTRVFRWPLGIPQ 108
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 112 Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query310
d2ivda2108 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 99.86
d1seza2112 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 99.82
d2ivda1347 Protoporphyrinogen oxidase {Myxococcus xanthus [Ta 99.44
d1seza1373 Protoporphyrinogen oxidase {Tobacco (Nicotiana tab 99.09
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 98.55
d2v5za2112 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 98.43
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 98.41
d2dw4a3109 Lysine-specific histone demethylase 1, LSD1 {Human 98.17
d1b5qa2112 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 98.1
d2iida2113 L-aminoacid oxidase {Malayan pit viper (Calloselas 98.02
d2bcgg1297 Guanine nucleotide dissociation inhibitor, GDI {Ba 98.01
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 97.53
d1d5ta1336 Guanine nucleotide dissociation inhibitor, GDI {Co 97.48
d2dw4a2449 Lysine-specific histone demethylase 1, LSD1 {Human 97.21
d3lada2119 Dihydrolipoamide dehydrogenase {Azotobacter vinela 97.2
d1aoga2117 Trypanothione reductase {Trypanosoma cruzi [TaxId: 97.02
d1gesa2116 Glutathione reductase {Escherichia coli [TaxId: 56 96.75
d1m6ia2137 Apoptosis-inducing factor (AIF) {Human (Homo sapie 96.71
d1feca2117 Trypanothione reductase {Crithidia fasciculata [Ta 96.65
d1ebda2117 Dihydrolipoamide dehydrogenase {Bacillus stearothe 96.38
d1onfa2117 Glutathione reductase {Plasmodium falciparum [TaxI 96.35
d1ojta2125 Dihydrolipoamide dehydrogenase {Neisseria meningit 95.98
d1dxla2123 Dihydrolipoamide dehydrogenase {Garden pea (Pisum 95.97
d1q1ra2133 Putidaredoxin reductase {Pseudomonas putida [TaxId 95.81
d2gv8a1335 Flavin-dependent monoxygenase SPBP16F5.08c {Schizo 95.76
d1mo9a2121 NADH-dependent 2-ketopropyl coenzyme M oxidoreduct 95.63
d1v59a2122 Dihydrolipoamide dehydrogenase {Baker's yeast (Sac 95.63
d2gf3a1281 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 95.57
d2i0za1251 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 95.28
d1ryia1276 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 94.59
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 94.46
d2gqfa1253 Hypothetical protein HI0933 {Haemophilus influenza 94.34
d1lvla2115 Dihydrolipoamide dehydrogenase {Pseudomonas putida 94.22
d1nhpa2123 NADH peroxidase {Enterococcus faecalis [TaxId: 135 93.98
d1w4xa1298 Phenylacetone monooxygenase {Thermobifida fusca [T 92.91
d1d7ya2121 NADH-dependent ferredoxin reductase, BphA4 {Pseudo 92.9
d3grsa2125 Glutathione reductase {Human (Homo sapiens) [TaxId 92.82
d1h6va2122 Mammalian thioredoxin reductase {Rat (Rattus norve 91.57
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 89.56
d1y0pa2308 Flavocytochrome c3 (respiratory fumarate reductase 87.83
d1m6ia1213 Apoptosis-inducing factor (AIF) {Human (Homo sapie 87.13
d1nhpa1198 NADH peroxidase {Enterococcus faecalis [TaxId: 135 86.75
d1ps9a2162 2,4-dienoyl-CoA reductase, C-terminal domain {Esch 85.83
d1n4wa1367 Cholesterol oxidase of GMC family {Streptomyces sp 85.73
d1qo8a2317 Flavocytochrome c3 (respiratory fumarate reductase 85.72
d1xhca2122 NADH oxidase /nitrite reductase {Pyrococcus furios 85.34
d1d4ca2322 Flavocytochrome c3 (respiratory fumarate reductase 84.46
d1vg0a1491 Rab escort protein 1 {Rat (Rattus norvegicus) [Tax 83.97
d2voua1265 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 83.93
d3coxa1370 Cholesterol oxidase of GMC family {Brevibacterium 83.71
d2gjca1311 Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( 82.81
>d2ivda2 d.16.1.5 (A:307-414) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: L-aminoacid/polyamine oxidase
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.86  E-value=3.5e-22  Score=146.83  Aligned_cols=107  Identities=32%  Similarity=0.546  Sum_probs=98.7

Q ss_pred             CCCEEEEEEEecCCccccccccCCCcCcceEEecCCCCCceeEEEeccCCCCCCCCCCcEEEEEEecCCCCCCCCCCCHH
Q 021616          135 YPPVAAVSVSYPKEAIRTECLIDGELKGFGQLHPRSQGVETLGTIYSSSLFPNRAPAGRVLLLNYIGGATNLGILSKKES  214 (310)
Q Consensus       135 ~~~~~~v~l~~~~~~~~~~~~~~~~~~g~g~l~~~~~~~~~~~~~~~s~~~p~~~p~g~~~l~~~~~g~~~~~~~~~~~e  214 (310)
                      |.++++|+|+|++..+.       ..+|||+|+|+.++..++|++|+|++||+++|+|+.++++|+||.+.+++..++||
T Consensus         2 Ya~vavV~l~~~~~~~~-------~~~GfG~LVP~~e~~~~lg~~f~S~~fp~r~p~~~~llrv~~Gg~~~~~~~~~~d~   74 (108)
T d2ivda2           2 YAPIAVVHLGFDAGTLP-------APDGFGFLVPAEEQRRMLGAIHASTTFPFRAEGGRVLYSCMVGGARQPGLVEQDED   74 (108)
T ss_dssp             BCCEEEEEEEECTTSSC-------CCCSSEEECCGGGCCSCCEEEEHHHHCGGGBSTTCEEEEEEEECTTCGGGGGSCHH
T ss_pred             CCCEEEEEEEEcHHHCC-------CCCceEEEccCCCCCeEEEEEEEccccccccCCCCEEEEEEeCCCCCcccccCCHH
Confidence            78999999999987653       13799999999999999999999999999999999999999999988888899999


Q ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEEEecCCCCCC
Q 021616          215 ELVEAVDRDLRKMLINPNAKDPLVLGVRVWQQAIPQ  250 (310)
Q Consensus       215 el~~~~~~~l~~~~~~~~~~~p~~~~~~rw~~a~p~  250 (310)
                      ++++.++++|++++|..  ..|...+++||.+|+||
T Consensus        75 ~l~~~a~~dL~~~lgi~--~~P~~~~v~rw~~aiPQ  108 (108)
T d2ivda2          75 ALAALAREELKALAGVT--ARPSFTRVFRWPLGIPQ  108 (108)
T ss_dssp             HHHHHHHHHHHHHHCCC--SCCSEEEEEEESSCCBC
T ss_pred             HHHHHHHHHHHHHhCCC--CCCcEEEeeECCCCcCc
Confidence            99999999999999986  57999999999999997
>d1seza2 d.16.1.5 (A:330-441) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Back     information, alignment and structure
>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b5qa2 d.16.1.5 (A:294-405) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Back     information, alignment and structure
>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Back     information, alignment and structure
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Back     information, alignment and structure
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Back     information, alignment and structure
>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Back     information, alignment and structure
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Back     information, alignment and structure
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Back     information, alignment and structure
>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Back     information, alignment and structure
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure