Citrus Sinensis ID: 021634

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Secondary Structure (PSIPRED)
cHHHHHHHcHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccEEHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEEccc
Coil and Loop (DISEMBL)
MEPFLEKFFPEVHRKMkedtkisnyckfdsqlLTSFTSSLYVAGLVASFVASSVtrafgrkpsvlmGGAAFLAGSALGGAAVNVYMLIFGRLLLGVgvgfanqsvplylsemaparyrgainngfQFSIGIGALAANFINYgteqikggwgWRVSLALAAVPASILTLGalflpetpnsliqRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKAsstaktinhpfKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTiglgrlkvcqlskwiecggsigfgRNMWVKWMNRVrwrkldiytli
Flexible Loop (DISEMBL)
MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLkasstaktinhpfkKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIecggsigfgrnmwVKWMnrvrwrkldiytli
Low Complexity Region (SEG)
MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMggaaflagsalggaaVNVYMLIFGRlllgvgvgFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Disordered region (IsUnstruct)
*******************TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPET****************************AEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL*
Disordered Region (DISOPRED)
MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLL**************KIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Disordered Region (DISEMBL)
MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Disordered Region (DISPRO)
*EPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTLI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
Q07423	510	Hexose carrier protein HE	N/A	no	0.861	0.523	0.838	1e-128
Q8L7R8	514	Sugar transport protein 3	yes	no	0.861	0.519	0.667	1e-103
Q41144	523	Sugar carrier protein C O	N/A	no	0.861	0.510	0.623	6e-95
P23586	522	Sugar transport protein 1	no	no	0.858	0.509	0.595	2e-91
Q39228	514	Sugar transport protein 4	no	no	0.858	0.517	0.608	2e-90
Q9FMX3	514	Sugar transport protein 1	no	no	0.864	0.521	0.592	2e-89
Q9SX48	517	Sugar transport protein 9	no	no	0.854	0.512	0.600	5e-88
Q9LT15	514	Sugar transport protein 1	no	no	0.858	0.517	0.585	4e-87
O65413	508	Sugar transport protein 1	no	no	0.854	0.521	0.574	1e-84
Q94AZ2	526	Sugar transport protein 1	no	no	0.858	0.505	0.574	1e-83

>sp|Q07423|HEX6_RICCO Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1

 Score =  457 bits (1177), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/267 (83%), Positives = 253/267 (94%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           M+PFL+KFFP+V+RKMKEDT+ISNYCKFDSQLLTSFTSSLYVAGLVASF ASSVTRAFGR
Sbjct: 49  MDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGR 108

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           KPS+L+GG  FLA +ALGGAAVNVYMLIFGR+LLGVGVGFANQ+VPLYLSEMAP RYRGA
Sbjct: 109 KPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGA 168

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           INNGFQFS+GIGAL+AN INYGTE+I+GGWGWR+SLA+AAVPA+ILT GALFLPETPNSL
Sbjct: 169 INNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSL 228

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           IQR +DH++AKLMLQRVRGT DV+AE DDL+KAS  ++TI HPFK I++RKYRPQL+MA+
Sbjct: 229 IQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAV 288

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGL 267
           AIPFFQQVTGINVIAFYAP+LFRTIGL
Sbjct: 289 AIPFFQQVTGINVIAFYAPILFRTIGL 315

Active uptake of hexoses. Probable glucose/hydrogen symport.
Ricinus communis (taxid: 3988)

>sp|Q8L7R8|STP3_ARATH Sugar transport protein 3 OS=Arabidopsis thaliana GN=STP3 PE=2 SV=2

 Score =  376 bits (966), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/274 (66%), Positives = 229/274 (83%), Gaps = 7/274 (2%)

Query: 1   MEPFLEKFFPEVHRKMKEDTK-----ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVT 55
           M PFL++FFP+V++  +ED +      ++YC F+SQLLTSFTSSLYV+GL+A+ +ASSVT
Sbjct: 51  MGPFLKRFFPKVYKLQEEDRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLASSVT 110

Query: 56  RAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPA 115
           R++GRKPS+ +GG +FLAG+ALGG+A NV MLI  RLLLGVGVGFANQSVPLYLSEMAPA
Sbjct: 111 RSWGRKPSIFLGGVSFLAGAALGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSEMAPA 170

Query: 116 RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE 175
           +YRGAI+NGFQ  IGIG L+AN INY T+ IK   GWR+SLA AA+PASILTLG+LFLPE
Sbjct: 171 KYRGAISNGFQLCIGIGFLSANVINYETQNIKH--GWRISLATAAIPASILTLGSLFLPE 228

Query: 176 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQ 235
           TPNS+IQ   D  K +LML+RVRGTNDV+ E  DL++ASS + T ++ F K++QRKYRP+
Sbjct: 229 TPNSIIQTTGDVHKTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQRKYRPE 288

Query: 236 LLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGR 269
           L+MA+ IPFFQQVTGINV+AFYAP+L+RT+G G 
Sbjct: 289 LVMALVIPFFQQVTGINVVAFYAPVLYRTVGFGE 322

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q41144|STC_RICCO Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1

 Score =  347 bits (891), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 167/268 (62%), Positives = 209/268 (77%), Gaps = 1/268 (0%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           M+ FL+KFFP V+RK K D   + YC++DSQ LT FTSSLY+A L+AS VAS++TR FGR
Sbjct: 52  MDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGR 111

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           K S+L GG  F AG+ + GAA  V+MLI GR+LLG G+GFANQSVPLYLSEMAP +YRGA
Sbjct: 112 KLSMLFGGVLFCAGAIINGAAKAVWMLILGRILLGFGIGFANQSVPLYLSEMAPYKYRGA 171

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           +N GFQ SI IG L AN +NY   +IKGGWGWR+SL  A VPA I+T+G+L LP+TPNS+
Sbjct: 172 LNIGFQLSITIGILVANVLNYFFAKIKGGWGWRLSLGGAMVPALIITVGSLVLPDTPNSM 231

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           I+R   H++A+  L+RVRG  DV+ EF DL+ AS  +K + HP++ ++QRKYRP L MA+
Sbjct: 232 IER-GQHEEARAHLKRVRGVEDVDEEFTDLVHASEDSKKVEHPWRNLLQRKYRPHLSMAI 290

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGLG 268
           AIPFFQQ+TGINVI FYAP+LF TIG G
Sbjct: 291 AIPFFQQLTGINVIMFYAPVLFDTIGFG 318

Ricinus communis (taxid: 3988)

>sp|P23586|STP1_ARATH Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2

 Score =  335 bits (860), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/267 (59%), Positives = 207/267 (77%), Gaps = 1/267 (0%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           M  FL++FFP V+RK +ED   + YC++DS  LT FTSSLY+A L++S VAS+VTR FGR
Sbjct: 50  MPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGR 109

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           + S+L GG  F AG+ + G A +V+MLI GR+LLG G+GFANQ+VPLYLSEMAP +YRGA
Sbjct: 110 RLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGA 169

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           +N GFQ SI IG L A  +NY   +IKGGWGWR+SL  A VPA I+T+G+L LP+TPNS+
Sbjct: 170 LNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSM 229

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           I+R   H++AK  L+R+RG +DV  EFDDL+ AS  +++I HP++ +++RKYRP L MA+
Sbjct: 230 IER-GQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAV 288

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGL 267
            IPFFQQ+TGINVI FYAP+LF TIG 
Sbjct: 289 MIPFFQQLTGINVIMFYAPVLFNTIGF 315

Major hexose transporter. Mediates an active uptake of hexoses, by sugar/hydrogen symport. Can transport glucose, 3-O-methylglucose, fructose, xylose, mannose, galactose, fucose, 2-deoxyglucose and arabinose. Confers sensitivity to galactose in seedlings.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39228|STP4_ARATH Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1

 Score =  332 bits (851), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 163/268 (60%), Positives = 203/268 (75%), Gaps = 2/268 (0%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           MEPFLE+FFP V++KMK   + + YC+FDSQLLT FTSSLYVA LV+S  AS++TR FGR
Sbjct: 50  MEPFLEEFFPYVYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGR 108

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           K S+ +GG  F  GSA  G A N+ ML+ GR+LLG GVGFANQSVP+YLSEMAP   RGA
Sbjct: 109 KWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGA 168

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
            NNGFQ +I  G + A  INY T Q+KG  GWR+SL LA VPA ++ +GAL LP+TPNSL
Sbjct: 169 FNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSL 228

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           I+R    ++AK MLQ +RGTN+V+ EF DL+ AS  +K + HP+K I+  +YRPQL+M  
Sbjct: 229 IERGYT-EEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTC 287

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGLG 268
            IPFFQQ+TGINVI FYAP+LF+T+G G
Sbjct: 288 FIPFFQQLTGINVITFYAPVLFQTLGFG 315

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, methylglucose, galactose, xylose and mannose, but not fructose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMX3|STP11_ARATH Sugar transport protein 11 OS=Arabidopsis thaliana GN=STP11 PE=1 SV=1

 Score =  329 bits (844), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 160/270 (59%), Positives = 208/270 (77%), Gaps = 2/270 (0%)

Query: 1   MEPFLEKFFPEVHRKMKEDT-KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG 59
           ME FL KFFP+V R+M+    + + YCK+D++LLT FTSSLY+A L ASF+AS++TR FG
Sbjct: 51  MEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFG 110

Query: 60  RKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRG 119
           RK S+++G  AFL+G+ L G A+N+ MLI GRL LGVGVGFANQSVPLYLSEMAPA+ RG
Sbjct: 111 RKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRG 170

Query: 120 AINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS 179
           A+N GFQ +I IG LAAN +NY T +++ G GWR+SL LA VPA ++ +G  FLP+TPNS
Sbjct: 171 ALNIGFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNS 230

Query: 180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMA 239
           +++R  + +KAK MLQ++RGT +VE EF++L  A   AK + HP+  I+Q +YRPQL   
Sbjct: 231 ILER-GNKEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFC 289

Query: 240 MAIPFFQQVTGINVIAFYAPLLFRTIGLGR 269
             IPFFQQ+TGINVI FYAP+LF+TIG G 
Sbjct: 290 TFIPFFQQLTGINVIMFYAPVLFKTIGFGN 319

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Can transport glucose, galactose, mannose, xylose and 3-O-methylglucose, but not fructose and ribose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX48|STP9_ARATH Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1

 Score =  324 bits (831), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 161/268 (60%), Positives = 203/268 (75%), Gaps = 3/268 (1%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           ME FL KFFPEV ++M E  + + YCKFD+QLL  FTSSLY+A L +SFVAS+VTR +GR
Sbjct: 52  MEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGR 111

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           K S+ +GG AFL GS     A NV MLI GRLLLGVGVGFANQS P+YLSEMAPA+ RGA
Sbjct: 112 KISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           +N GFQ +I IG L AN INYGT Q+    GWRVSL LAAVPA I+ +G+  LP+TPNS+
Sbjct: 172 LNIGFQMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSM 230

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQR-KYRPQLLMA 239
           ++R   +++A+ MLQ++RG ++V+ EF DL  A   AK +++P+K I Q+ KYRP L+  
Sbjct: 231 LER-GKYEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFC 289

Query: 240 MAIPFFQQVTGINVIAFYAPLLFRTIGL 267
            AIPFFQQ+TGINVI FYAP+LF+T+G 
Sbjct: 290 SAIPFFQQITGINVIMFYAPVLFKTLGF 317

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport. Mostly transports glucose, and barely galactose, xylose and mannose.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT15|STP10_ARATH Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1

 Score =  321 bits (823), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 157/268 (58%), Positives = 203/268 (75%), Gaps = 2/268 (0%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           ME FL KFFP+V  +MK+    + YCKFD+Q+L  FTSSLY+A LVASF+AS +TR  GR
Sbjct: 52  MEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGR 111

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           K S+ +GG AFL G+     AVNV MLI GRLLLGVGVGFANQS P+YLSEMAPA+ RGA
Sbjct: 112 KVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           +N GFQ +I IG L AN INYGT ++    GWRVSL LAAVPA ++ +G+  LP+TPNS+
Sbjct: 172 LNIGFQMAITIGILVANLINYGTSKMAQH-GWRVSLGLAAVPAVVMVIGSFILPDTPNSM 230

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           ++R   +++AK ML+++RG ++V+ EF DL+ A   AK + +P+K I++ KYRP L+   
Sbjct: 231 LER-GKNEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS 289

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGLG 268
           AIPFFQQ+TGINVI FYAP+LF+T+G G
Sbjct: 290 AIPFFQQITGINVIMFYAPVLFKTLGFG 317

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|O65413|STP12_ARATH Sugar transport protein 12 OS=Arabidopsis thaliana GN=STP12 PE=2 SV=1

 Score =  313 bits (801), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 154/268 (57%), Positives = 199/268 (74%), Gaps = 3/268 (1%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           M+ F +KFFP V+ K K+D   + YC+FDS  LT FTSSLY+A L +S VAS VTR FGR
Sbjct: 50  MDSFQQKFFPSVYEKQKKDHDSNQYCRFDSVSLTLFTSSLYLAALCSSLVASYVTRQFGR 109

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           K S+L+GG  F AG+ L G A  V+MLI GRLLLG G+GF NQSVPLYLSEMAP +YRGA
Sbjct: 110 KISMLLGGVLFCAGALLNGFATAVWMLIVGRLLLGFGIGFTNQSVPLYLSEMAPYKYRGA 169

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           +N GFQ SI IG L AN +N+   +I   WGWR+SL  A VPA I+T+G+L LP+TPNS+
Sbjct: 170 LNIGFQLSITIGILVANVLNFFFSKIS--WGWRLSLGGAVVPALIITVGSLILPDTPNSM 227

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           I+R    + A+  L+++RG +D++ E +DL+ AS  +K + HP++ ++QRKYRP L MA+
Sbjct: 228 IER-GQFRLAEAKLRKIRGVDDIDDEINDLIIASEASKLVEHPWRNLLQRKYRPHLTMAI 286

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGLG 268
            IP FQQ+TGINVI FYAP+LF+TIG G
Sbjct: 287 LIPAFQQLTGINVIMFYAPVLFQTIGFG 314

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AZ2|STP13_ARATH Sugar transport protein 13 OS=Arabidopsis thaliana GN=STP13 PE=1 SV=2

 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 155/270 (57%), Positives = 202/270 (74%), Gaps = 4/270 (1%)

Query: 1   MEPFLEKFFPEVHRKMKEDT-KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG 59
           M  FLEKFFP V+RK+     K SNYCK+D+Q L  FTSSLY+AGL A+F AS  TR  G
Sbjct: 50  MPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLG 109

Query: 60  RKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRG 119
           R+ ++L+ G  F+ G AL   A ++ MLI GR+LLG GVGFANQ+VPL+LSE+AP R RG
Sbjct: 110 RRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169

Query: 120 AINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS 179
            +N  FQ ++ IG L AN +NYGT +IKGGWGWR+SL LA +PA +LT+GAL + ETPNS
Sbjct: 170 GLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNS 229

Query: 180 LIQR-KSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLM 238
           L++R + D  KA  +L+R+RGT++VE EF DLL+AS  AK + HPF+ ++QR+ RPQL++
Sbjct: 230 LVERGRLDEGKA--VLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVI 287

Query: 239 AMAIPFFQQVTGINVIAFYAPLLFRTIGLG 268
           A+A+  FQQ TGIN I FYAP+LF T+G G
Sbjct: 288 AVALQIFQQCTGINAIMFYAPVLFSTLGFG 317

Mediates an active uptake of hexoses, probably by sugar/hydrogen symport.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
47078687	508	putative hexose transporter [Vitis vinif	0.864	0.527	0.847	1e-131
225466031	508	PREDICTED: hexose carrier protein HEX6 [	0.864	0.527	0.847	1e-131
147816021	508	hypothetical protein VITISV_025873 [Viti	0.864	0.527	0.843	1e-130
255539853	510	sugar transporter, putative [Ricinus com	0.861	0.523	0.846	1e-127
1708191	510	RecName: Full=Hexose carrier protein HEX	0.861	0.523	0.838	1e-126
224129904	516	predicted protein [Populus trichocarpa]	0.861	0.517	0.788	1e-124
224139190	509	predicted protein [Populus trichocarpa]	0.867	0.528	0.847	1e-123
356517750	501	PREDICTED: hexose carrier protein HEX6-l	0.867	0.536	0.747	1e-121
357455795	509	Hexose carrier [Medicago truncatula] gi|	0.867	0.528	0.758	1e-120
356515367	510	PREDICTED: hexose carrier protein HEX6-l	0.867	0.527	0.782	1e-117

>gi|47078687|gb|AAT09978.1| putative hexose transporter [Vitis vinifera]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/268 (84%), Positives = 252/268 (94%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           M+ FL+KFFPEV+++MKEDTKISNYCKFDSQLLTSFTSSLY+AGLVASFVAS +T+ FGR
Sbjct: 49  MDSFLKKFFPEVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGR 108

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           KP++L GGAAFL GSALGGAA NVYM+I GR+LLGVGVGFANQ+VPLYLSEMAP RYRGA
Sbjct: 109 KPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGA 168

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           INNGFQFSIG+GAL+AN IN+GTE+IKGGWGWRVSLALAAVPASILTLGALFLPETPNSL
Sbjct: 169 INNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 228

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           IQR  D+ KA+LMLQRVRGTNDV+AE DDL+KASS AKTIN PFKKI+QRKYRPQL+MA+
Sbjct: 229 IQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAI 288

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGLG 268
           AIPFFQQVTGINVIAFYAP+LFR IGLG
Sbjct: 289 AIPFFQQVTGINVIAFYAPVLFRAIGLG 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466031|ref|XP_002267655.1| PREDICTED: hexose carrier protein HEX6 [Vitis vinifera] gi|310877794|gb|ADP37128.1| hexose transporter [Vitis vinifera]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/268 (84%), Positives = 252/268 (94%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           M+ FL+KFFPEV+++MKEDTKISNYCKFDSQLLTSFTSSLY+AGLVASFVAS +T+ FGR
Sbjct: 49  MDSFLKKFFPEVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGR 108

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           KP++L GGAAFL GSALGGAA NVYM+I GR+LLGVGVGFANQ+VPLYLSEMAP RYRGA
Sbjct: 109 KPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGA 168

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           INNGFQFSIG+GAL+AN IN+GTE+IKGGWGWRVSLALAAVPASILTLGALFLPETPNSL
Sbjct: 169 INNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 228

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           IQR  D+ KA+LMLQRVRGTNDV+AE DDL+KASS AKTIN PFKKI+QRKYRPQL+MA+
Sbjct: 229 IQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAI 288

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGLG 268
           AIPFFQQVTGINVIAFYAP+LFR IGLG
Sbjct: 289 AIPFFQQVTGINVIAFYAPVLFRAIGLG 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147816021|emb|CAN72462.1| hypothetical protein VITISV_025873 [Vitis vinifera]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/268 (84%), Positives = 251/268 (93%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           M+ FL+KFFP V+++MKEDTKISNYCKFDSQLLTSFTSSLY+AGLVASFVAS +T+ FGR
Sbjct: 49  MDSFLKKFFPXVYKRMKEDTKISNYCKFDSQLLTSFTSSLYIAGLVASFVASWITKKFGR 108

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           KP++L GGAAFL GSALGGAA NVYM+I GR+LLGVGVGFANQ+VPLYLSEMAP RYRGA
Sbjct: 109 KPTILAGGAAFLIGSALGGAAFNVYMVILGRILLGVGVGFANQAVPLYLSEMAPPRYRGA 168

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           INNGFQFSIG+GAL+AN IN+GTE+IKGGWGWRVSLALAAVPASILTLGALFLPETPNSL
Sbjct: 169 INNGFQFSIGVGALSANLINFGTEKIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 228

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           IQR  D+ KA+LMLQRVRGTNDV+AE DDL+KASS AKTIN PFKKI+QRKYRPQL+MA+
Sbjct: 229 IQRSKDYGKAELMLQRVRGTNDVQAELDDLVKASSLAKTINDPFKKILQRKYRPQLVMAI 288

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGLG 268
           AIPFFQQVTGINVIAFYAP+LFR IGLG
Sbjct: 289 AIPFFQQVTGINVIAFYAPVLFRAIGLG 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539853|ref|XP_002510991.1| sugar transporter, putative [Ricinus communis] gi|223550106|gb|EEF51593.1| sugar transporter, putative [Ricinus communis]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/267 (84%), Positives = 255/267 (95%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           M+PFL+KFFP+V+RKMKEDT+ISNYCKFDSQLLTSFTSSLYVAGLVASF ASSVTRAFGR
Sbjct: 49  MDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGR 108

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           KPS+L+GGA FLAG+ALGGAAVNVYMLIFGR+LLGVGVGFANQ+VPLYLSEMAP RYRGA
Sbjct: 109 KPSILLGGAVFLAGAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGA 168

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           INNGFQFS+GIGAL+AN INYGTE+I+GGWGWR+SLA+AAVPA+ILT GALFLPETPNSL
Sbjct: 169 INNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSL 228

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           IQR +DH++AKLMLQRVRGT DV+AE DDL+KAS  ++TI HPFK I++RKYRPQL+MA+
Sbjct: 229 IQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAV 288

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGL 267
           AIPFFQQVTGINVIAFYAP+LFRTIGL
Sbjct: 289 AIPFFQQVTGINVIAFYAPILFRTIGL 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1708191|sp|Q07423.1|HEX6_RICCO RecName: Full=Hexose carrier protein HEX6 gi|467319|gb|AAA79857.1| hexose carrier protein [Ricinus communis]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/267 (83%), Positives = 253/267 (94%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           M+PFL+KFFP+V+RKMKEDT+ISNYCKFDSQLLTSFTSSLYVAGLVASF ASSVTRAFGR
Sbjct: 49  MDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGR 108

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           KPS+L+GG  FLA +ALGGAAVNVYMLIFGR+LLGVGVGFANQ+VPLYLSEMAP RYRGA
Sbjct: 109 KPSILLGGXVFLAXAALGGAAVNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGA 168

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           INNGFQFS+GIGAL+AN INYGTE+I+GGWGWR+SLA+AAVPA+ILT GALFLPETPNSL
Sbjct: 169 INNGFQFSVGIGALSANLINYGTEKIEGGWGWRISLAMAAVPAAILTFGALFLPETPNSL 228

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           IQR +DH++AKLMLQRVRGT DV+AE DDL+KAS  ++TI HPFK I++RKYRPQL+MA+
Sbjct: 229 IQRSNDHERAKLMLQRVRGTTDVQAELDDLIKASIISRTIQHPFKNIMRRKYRPQLVMAV 288

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGL 267
           AIPFFQQVTGINVIAFYAP+LFRTIGL
Sbjct: 289 AIPFFQQVTGINVIAFYAPILFRTIGL 315

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129904|ref|XP_002328832.1| predicted protein [Populus trichocarpa] gi|222839130|gb|EEE77481.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/274 (78%), Positives = 246/274 (89%), Gaps = 7/274 (2%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           MEPFL+KFFPEV+ +MKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASF ASS+TR FGR
Sbjct: 49  MEPFLKKFFPEVYARMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFFASSITRYFGR 108

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS-------VPLYLSEMA 113
           KPS+L GGAAFL+GSAL GAA N+YMLIFGR+LLGVGVGFANQ+       VPLYLSEMA
Sbjct: 109 KPSILAGGAAFLSGSALNGAATNLYMLIFGRVLLGVGVGFANQAGAEPRRAVPLYLSEMA 168

Query: 114 PARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL 173
           P RYRGAINNGFQ  I IG L+ANFIN+GTE+I+GGWGWR+SLA+ A+PA+ LT+G+LFL
Sbjct: 169 PPRYRGAINNGFQLCIAIGVLSANFINFGTEKIEGGWGWRISLAMGAIPATFLTIGSLFL 228

Query: 174 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYR 233
           PETPNSLIQR +D QKAK MLQR+RGT DVEAEF+DL+KAS  +K+I HP KKIIQ+KYR
Sbjct: 229 PETPNSLIQRFNDEQKAKTMLQRIRGTTDVEAEFNDLIKASLVSKSIEHPIKKIIQKKYR 288

Query: 234 PQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGL 267
           PQL+MA+AIPFFQQVTGINVI+FYAP+LFRTIGL
Sbjct: 289 PQLVMAIAIPFFQQVTGINVISFYAPILFRTIGL 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139190|ref|XP_002323002.1| predicted protein [Populus trichocarpa] gi|222867632|gb|EEF04763.1| predicted protein [Populus trichocarpa]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/269 (84%), Positives = 255/269 (94%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           MEPFLEKFFP+V+RKMKEDT+ISNYCKFDSQLLTSFTSS+YVAG +ASF ASS+T+AFGR
Sbjct: 50  MEPFLEKFFPKVYRKMKEDTEISNYCKFDSQLLTSFTSSMYVAGFIASFFASSITKAFGR 109

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           KPS+L+GGAAFLAG+ALGGAA NVYMLIFGR+LLGVGVGFANQ+VPLYLSEMAP RYRGA
Sbjct: 110 KPSILLGGAAFLAGAALGGAAFNVYMLIFGRVLLGVGVGFANQAVPLYLSEMAPPRYRGA 169

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           INNGFQFSIGIGAL+AN INYGTE+IKGGWGWR+SLALAAVPA+ILTLGA+FLPETPNSL
Sbjct: 170 INNGFQFSIGIGALSANLINYGTEKIKGGWGWRISLALAAVPATILTLGAVFLPETPNSL 229

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           IQ   D ++AKLMLQRVRGT DV+AE DDL+KASS +KT+ HPFKKII+RKYRPQL+MA+
Sbjct: 230 IQLTDDTERAKLMLQRVRGTEDVQAELDDLIKASSISKTVEHPFKKIIKRKYRPQLVMAI 289

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGLGR 269
           AIPFFQQVTGINVIAFYAP+LFRTIGLG 
Sbjct: 290 AIPFFQQVTGINVIAFYAPILFRTIGLGE 318

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517750|ref|XP_003527549.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 201/269 (74%), Positives = 240/269 (89%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           M PFLEKFFP+V+ KMK+DTK+SNYCKFDSQLLT+FTSSLY+AGL+ASF ASSVTRAFGR
Sbjct: 49  MVPFLEKFFPDVYTKMKQDTKVSNYCKFDSQLLTAFTSSLYIAGLIASFFASSVTRAFGR 108

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           KPS+L+GGAAFL G+ALGGAA+N+YMLI GR++LGVG+GFANQS PLYLSEMAP RYRGA
Sbjct: 109 KPSILIGGAAFLIGAALGGAALNIYMLILGRVMLGVGIGFANQSAPLYLSEMAPPRYRGA 168

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           IN GFQ  +GIG L+AN +N+GTE+IK GWGWR+SL +AAVPAS+LT G+LFLPETPNS+
Sbjct: 169 INTGFQLCVGIGVLSANLVNFGTEKIKAGWGWRISLVMAAVPASMLTFGSLFLPETPNSI 228

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           IQ   +HQKAKLMLQR+RGT+DV+ E +DL++AS  + +I HPFK I+ RKYRPQL+MA+
Sbjct: 229 IQHDKNHQKAKLMLQRIRGTDDVQQELEDLIEASEMSNSIKHPFKNILHRKYRPQLVMAI 288

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGLGR 269
           AIPFFQQ TGINVI+FYAP+LF TIGLG 
Sbjct: 289 AIPFFQQFTGINVISFYAPILFLTIGLGE 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455795|ref|XP_003598178.1| Hexose carrier [Medicago truncatula] gi|355487226|gb|AES68429.1| Hexose carrier [Medicago truncatula]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/269 (75%), Positives = 241/269 (89%)

Query: 1   MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
           M PFLEKFFP+V+ KMK+D KISNYCKFDSQLLT+FTSSLY+AGL+ASF ASS+TRAFGR
Sbjct: 50  MVPFLEKFFPDVYTKMKQDNKISNYCKFDSQLLTTFTSSLYIAGLLASFFASSITRAFGR 109

Query: 61  KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA 120
           KPS+L+GGAAFL G+ALGGAA+N+YMLI GR+LLGVG+GFANQ+VPLYLSEMA  RYRGA
Sbjct: 110 KPSILVGGAAFLIGAALGGAALNIYMLILGRVLLGVGIGFANQAVPLYLSEMALPRYRGA 169

Query: 121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
           IN GFQ  +GIG L+AN IN+GTE+IK GWGWR+SLA+AAVPA+ILTLGA FLPETPNS+
Sbjct: 170 INIGFQLCVGIGVLSANLINFGTEKIKDGWGWRISLAMAAVPATILTLGAFFLPETPNSI 229

Query: 181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
           IQ   +HQKAKLMLQ +RGT+DV+ EF+DL++AS  + +I HPFK I+QRKYRPQL+MA+
Sbjct: 230 IQNSKNHQKAKLMLQSIRGTHDVQQEFEDLIEASIMSNSIKHPFKNILQRKYRPQLVMAI 289

Query: 241 AIPFFQQVTGINVIAFYAPLLFRTIGLGR 269
           AIPFFQQ TGINVI+FYAP+LF TIGLG 
Sbjct: 290 AIPFFQQFTGINVISFYAPILFLTIGLGE 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515367|ref|XP_003526372.1| PREDICTED: hexose carrier protein HEX6-like [Glycine max]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/271 (78%), Positives = 239/271 (88%), Gaps = 2/271 (0%)

Query: 1   MEPFLEKFFPEVHRKMK-EDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG 59
           MEPFL+KFF +V+ KMK  D K+SNYC FDSQLLTSFTSSLYVAGLV SF AS +T+AFG
Sbjct: 49  MEPFLKKFFHKVYLKMKLADDKVSNYCVFDSQLLTSFTSSLYVAGLVTSFFASYITKAFG 108

Query: 60  RKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRG 119
           RKPS+++GGAAFLAG+ LGGAA NVYMLI GRLLLGVGVGFANQ+VPLYLSEMA  R RG
Sbjct: 109 RKPSIVVGGAAFLAGTGLGGAAFNVYMLIVGRLLLGVGVGFANQAVPLYLSEMALPRLRG 168

Query: 120 AINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS 179
           AINNGFQ SIGIGAL+AN INYGTE+I+GGWGWR+SLA+AAVPAS+LTLGALFLPETPNS
Sbjct: 169 AINNGFQLSIGIGALSANLINYGTEKIEGGWGWRMSLAMAAVPASVLTLGALFLPETPNS 228

Query: 180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTIN-HPFKKIIQRKYRPQLLM 238
           +IQR  D QKAKLMLQR+RG  DV+AE DDL+KASS +KT N    K I++ +YRPQL+M
Sbjct: 229 VIQRSHDKQKAKLMLQRIRGMEDVQAELDDLIKASSPSKTNNKQSLKLILKGRYRPQLVM 288

Query: 239 AMAIPFFQQVTGINVIAFYAPLLFRTIGLGR 269
           A+AIPFFQQVTGINVIAFYAPLLFRTIGLG 
Sbjct: 289 ALAIPFFQQVTGINVIAFYAPLLFRTIGLGE 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2151596	514	AT5G61520 [Arabidopsis thalian	0.858	0.517	0.608	7.4e-82
TAIR|locus:2202044	522	STP1 "AT1G11260" [Arabidopsis	0.854	0.507	0.552	2.1e-75
TAIR|locus:2092286	514	STP4 "sugar transporter 4" [Ar	0.890	0.536	0.544	4e-74
TAIR|locus:2166781	514	STP11 "sugar transporter 11" [	0.861	0.519	0.539	5.9e-73
TAIR|locus:2011957	517	STP9 "sugar transporter 9" [Ar	0.851	0.510	0.543	6.1e-71
TAIR|locus:2092221	514	AT3G19940 [Arabidopsis thalian	0.858	0.517	0.529	6.1e-71
TAIR|locus:2151074	526	MSS1 "AT5G26340" [Arabidopsis	0.858	0.505	0.529	1.4e-69
TAIR|locus:2195995	504	STP14 "sugar transport protein	0.858	0.527	0.490	5.1e-67
TAIR|locus:2132213	513	STP7 "sugar transporter protei	0.854	0.516	0.492	1.3e-66
TAIR|locus:2009323	506	AT1G34580 [Arabidopsis thalian	0.851	0.521	0.494	1.4e-62

TAIR|locus:2151596 AT5G61520 [Arabidopsis thaliana (taxid:3702)]

 Score = 821 (294.1 bits), Expect = 7.4e-82, P = 7.4e-82
 Identities = 166/273 (60%), Positives = 207/273 (75%)

Query:     1 MEPFLEKFFPEVHRKMKEDTKI---SN--YCKFDSQLLTSFTSSLYVAGLVASFVASSVT 55
             M PFL++FFP+V++  +ED +    SN  YC F+SQLLTSFTSSLYV+GL+A+ +ASSVT
Sbjct:    51 MGPFLKRFFPKVYKLQEEDRRRRGNSNNHYCLFNSQLLTSFTSSLYVSGLIATLLASSVT 110

Query:    56 RAFGRKPSVLMXXXXXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPA 115
             R++GRKPS+ +                NV MLI  R        FANQSVPLYLSEMAPA
Sbjct:   111 RSWGRKPSIFLGGVSFLAGAALGGSAQNVAMLIIARLLLGVGVGFANQSVPLYLSEMAPA 170

Query:   116 RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE 175
             +YRGAI+NGFQ  IGIG L+AN INY T+ IK GW  R+SLA AA+PASILTLG+LFLPE
Sbjct:   171 KYRGAISNGFQLCIGIGFLSANVINYETQNIKHGW--RISLATAAIPASILTLGSLFLPE 228

Query:   176 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQ 235
             TPNS+IQ   D  K +LML+RVRGTNDV+ E  DL++ASS + T ++ F K++QRKYRP+
Sbjct:   229 TPNSIIQTTGDVHKTELMLRRVRGTNDVQDELTDLVEASSGSDTDSNAFLKLLQRKYRPE 288

Query:   236 LLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLG 268
             L+MA+ IPFFQQVTGINV+AFYAP+L+RT+G G
Sbjct:   289 LVMALVIPFFQQVTGINVVAFYAPVLYRTVGFG 321

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2202044 STP1 "AT1G11260" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 147/266 (55%), Positives = 191/266 (71%)

Query:     1 MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
             M  FL++FFP V+RK +ED   + YC++DS  LT FTSSLY+A L++S VAS+VTR FGR
Sbjct:    50 MPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGR 109

Query:    61 KPSVLMXXXXXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGA 120
             + S+L                 +V+MLI GR        FANQ+VPLYLSEMAP +YRGA
Sbjct:   110 RLSMLFGGILFCAGALINGFAKHVWMLIVGRILLGFGIGFANQAVPLYLSEMAPYKYRGA 169

Query:   121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
             +N GFQ SI IG L A  +NY   +IKGGWGWR+SL  A VPA I+T+G+L LP+TPNS+
Sbjct:   170 LNIGFQLSITIGILVAEVLNYFFAKIKGGWGWRLSLGGAVVPALIITIGSLVLPDTPNSM 229

Query:   181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
             I+R   H++AK  L+R+RG +DV  EFDDL+ AS  +++I HP++ +++RKYRP L MA+
Sbjct:   230 IER-GQHEEAKTKLRRIRGVDDVSQEFDDLVAASKESQSIEHPWRNLLRRKYRPHLTMAV 288

Query:   241 AIPFFQQVTGINVIAFYAPLLFRTIG 266
              IPFFQQ+TGINVI FYAP+LF TIG
Sbjct:   289 MIPFFQQLTGINVIMFYAPVLFNTIG 314

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2092286 STP4 "sugar transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 152/279 (54%), Positives = 192/279 (68%)

Query:     1 MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
             MEPFLE+FFP V++KMK   + + YC+FDSQLLT FTSSLYVA LV+S  AS++TR FGR
Sbjct:    50 MEPFLEEFFPYVYKKMKSAHE-NEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGR 108

Query:    61 KPSVLMXXXXXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGA 120
             K S+ +                N+ ML+ GR        FANQSVP+YLSEMAP   RGA
Sbjct:   109 KWSMFLGGFTFFIGSAFNGFAQNIAMLLIGRILLGFGVGFANQSVPVYLSEMAPPNLRGA 168

Query:   121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
              NNGFQ +I  G + A  INY T Q+KG  GWR+SL LA VPA ++ +GAL LP+TPNSL
Sbjct:   169 FNNGFQVAIIFGIVVATIINYFTAQMKGNIGWRISLGLACVPAVMIMIGALILPDTPNSL 228

Query:   181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
             I+R    ++AK MLQ +RGTN+V+ EF DL+ AS  +K + HP+K I+  +YRPQL+M  
Sbjct:   229 IERGYT-EEAKEMLQSIRGTNEVDEEFQDLIDASEESKQVKHPWKNIMLPRYRPQLIMTC 287

Query:   241 AIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWI 279
              IPFFQQ+TGINVI FYAP+LF+T+G G  K   LS  +
Sbjct:   288 FIPFFQQLTGINVITFYAPVLFQTLGFGS-KASLLSAMV 325

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0008506 "sucrose:hydrogen symporter activity" evidence=IDA

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IDA

GO:0015770 "sucrose transport" evidence=TAS

TAIR|locus:2166781 STP11 "sugar transporter 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 145/269 (53%), Positives = 191/269 (71%)

Query:     1 MEPFLEKFFPEVHRKMKEDT-KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG 59
             ME FL KFFP+V R+M+    + + YCK+D++LLT FTSSLY+A L ASF+AS++TR FG
Sbjct:    51 MEDFLTKFFPDVLRQMQNKRGRETEYCKYDNELLTLFTSSLYLAALFASFLASTITRLFG 110

Query:    60 RKPSVLMXXXXXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRG 119
             RK S+++               +N+ MLI GR        FANQSVPLYLSEMAPA+ RG
Sbjct:   111 RKVSMVIGSLAFLSGALLNGLAINLEMLIIGRLFLGVGVGFANQSVPLYLSEMAPAKIRG 170

Query:   120 AINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS 179
             A+N GFQ +I IG LAAN +NY T +++ G GWR+SL LA VPA ++ +G  FLP+TPNS
Sbjct:   171 ALNIGFQLAITIGILAANIVNYVTPKLQNGIGWRLSLGLAGVPAVMMLVGCFFLPDTPNS 230

Query:   180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMA 239
             +++R  + +KAK MLQ++RGT +VE EF++L  A   AK + HP+  I+Q +YRPQL   
Sbjct:   231 ILER-GNKEKAKEMLQKIRGTMEVEHEFNELCNACEAAKKVKHPWTNIMQARYRPQLTFC 289

Query:   240 MAIPFFQQVTGINVIAFYAPLLFRTIGLG 268
               IPFFQQ+TGINVI FYAP+LF+TIG G
Sbjct:   290 TFIPFFQQLTGINVIMFYAPVLFKTIGFG 318

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2011957 STP9 "sugar transporter 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 145/267 (54%), Positives = 187/267 (70%)

Query:     1 MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
             ME FL KFFPEV ++M E  + + YCKFD+QLL  FTSSLY+A L +SFVAS+VTR +GR
Sbjct:    52 MEEFLSKFFPEVDKQMHEARRETAYCKFDNQLLQLFTSSLYLAALASSFVASAVTRKYGR 111

Query:    61 KPSVLMXXXXXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGA 120
             K S+ +                NV MLI GR        FANQS P+YLSEMAPA+ RGA
Sbjct:   112 KISMFVGGVAFLIGSLFNAFATNVAMLIVGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171

Query:   121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
             +N GFQ +I IG L AN INYGT Q+    GWRVSL LAAVPA I+ +G+  LP+TPNS+
Sbjct:   172 LNIGFQMAITIGILIANLINYGTSQMAKN-GWRVSLGLAAVPAVIMVIGSFVLPDTPNSM 230

Query:   181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQR-KYRPQLLMA 239
             ++R   +++A+ MLQ++RG ++V+ EF DL  A   AK +++P+K I Q+ KYRP L+  
Sbjct:   231 LER-GKYEQAREMLQKIRGADNVDEEFQDLCDACEAAKKVDNPWKNIFQQAKYRPALVFC 289

Query:   240 MAIPFFQQVTGINVIAFYAPLLFRTIG 266
              AIPFFQQ+TGINVI FYAP+LF+T+G
Sbjct:   290 SAIPFFQQITGINVIMFYAPVLFKTLG 316

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2092221 AT3G19940 [Arabidopsis thaliana (taxid:3702)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 142/268 (52%), Positives = 187/268 (69%)

Query:     1 MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
             ME FL KFFP+V  +MK+    + YCKFD+Q+L  FTSSLY+A LVASF+AS +TR  GR
Sbjct:    52 MEEFLTKFFPQVESQMKKAKHDTAYCKFDNQMLQLFTSSLYLAALVASFMASVITRKHGR 111

Query:    61 KPSVLMXXXXXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGA 120
             K S+ +               VNV MLI GR        FANQS P+YLSEMAPA+ RGA
Sbjct:   112 KVSMFIGGLAFLIGALFNAFAVNVSMLIIGRLLLGVGVGFANQSTPVYLSEMAPAKIRGA 171

Query:   121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
             +N GFQ +I IG L AN INYGT ++    GWRVSL LAAVPA ++ +G+  LP+TPNS+
Sbjct:   172 LNIGFQMAITIGILVANLINYGTSKM-AQHGWRVSLGLAAVPAVVMVIGSFILPDTPNSM 230

Query:   181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
             ++R   +++AK ML+++RG ++V+ EF DL+ A   AK + +P+K I++ KYRP L+   
Sbjct:   231 LER-GKNEEAKQMLKKIRGADNVDHEFQDLIDAVEAAKKVENPWKNIMESKYRPALIFCS 289

Query:   241 AIPFFQQVTGINVIAFYAPLLFRTIGLG 268
             AIPFFQQ+TGINVI FYAP+LF+T+G G
Sbjct:   290 AIPFFQQITGINVIMFYAPVLFKTLGFG 317

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2151074 MSS1 "AT5G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 143/270 (52%), Positives = 188/270 (69%)

Query:     1 MEPFLEKFFPEVHRKMKEDT-KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG 59
             M  FLEKFFP V+RK+     K SNYCK+D+Q L  FTSSLY+AGL A+F AS  TR  G
Sbjct:    50 MPDFLEKFFPVVYRKVVAGADKDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRTLG 109

Query:    60 RKPSVLMXXXXXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRG 119
             R+ ++L+                ++ MLI GR        FANQ+VPL+LSE+AP R RG
Sbjct:   110 RRLTMLIAGVFFIIGVALNAGAQDLAMLIAGRILLGCGVGFANQAVPLFLSEIAPTRIRG 169

Query:   120 AINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS 179
              +N  FQ ++ IG L AN +NYGT +IKGGWGWR+SL LA +PA +LT+GAL + ETPNS
Sbjct:   170 GLNILFQLNVTIGILFANLVNYGTAKIKGGWGWRLSLGLAGIPALLLTVGALLVTETPNS 229

Query:   180 LIQR-KSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLM 238
             L++R + D  KA  +L+R+RGT++VE EF DLL+AS  AK + HPF+ ++QR+ RPQL++
Sbjct:   230 LVERGRLDEGKA--VLRRIRGTDNVEPEFADLLEASRLAKEVKHPFRNLLQRRNRPQLVI 287

Query:   239 AMAIPFFQQVTGINVIAFYAPLLFRTIGLG 268
             A+A+  FQQ TGIN I FYAP+LF T+G G
Sbjct:   288 AVALQIFQQCTGINAIMFYAPVLFSTLGFG 317

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005358 "high-affinity hydrogen:glucose symporter activity" evidence=IDA

GO:0009679 "hexose:hydrogen symporter activity" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=IMP

GO:0015749 "monosaccharide transport" evidence=IMP

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2195995 STP14 "sugar transport protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 132/269 (49%), Positives = 188/269 (69%)

Query:     1 MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
             M+ FL++FFP ++++ +     ++YCK+D+Q+LT FTSSLY AGL+++F AS VTR +GR
Sbjct:    53 MDDFLKEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGR 112

Query:    61 KPSVLMXXXXXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGA 120
             + S+L+                N+ MLI GR        F NQ+VPLYLSEMAPA+ RG 
Sbjct:   113 RGSILVGSVSFFLGGVINAAAKNILMLILGRIFLGIGIGFGNQAVPLYLSEMAPAKIRGT 172

Query:   121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
             +N  FQ +  IG L AN INY TEQI   WGWR+SL LA VPA ++ LG L LPETPNSL
Sbjct:   173 VNQLFQLTTCIGILVANLINYKTEQIHP-WGWRLSLGLATVPAILMFLGGLVLPETPNSL 231

Query:   181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLM-A 239
             +++    +KAK +L +VRGTN++EAEF DL++AS  A+ + +PF+ ++ R+ RPQL++ A
Sbjct:   232 VEQ-GKLEKAKAVLIKVRGTNNIEAEFQDLVEASDAARAVKNPFRNLLARRNRPQLVIGA 290

Query:   240 MAIPFFQQVTGINVIAFYAPLLFRTIGLG 268
             + +P FQQ+TG+N I FYAP++F+++G G
Sbjct:   291 IGLPAFQQLTGMNSILFYAPVMFQSLGFG 319

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005354 "galactose transmembrane transporter activity" evidence=IGI

TAIR|locus:2132213 STP7 "sugar transporter protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 132/268 (49%), Positives = 184/268 (68%)

Query:     1 MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
             M+ FLE+FF  V+ K K+  + SNYCK+D+Q L +FTSSLY+AGLV++ VAS +TR +GR
Sbjct:    54 MDEFLEEFFHTVYEKKKQAHE-SNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGR 112

Query:    61 KPSVLMXXXXXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGA 120
             + S++                VN+ ML+ GR        F NQ+VPLYLSE+AP   RG 
Sbjct:   113 RASIVCGGISFLIGSGLNAGAVNLAMLLAGRIMLGVGIGFGNQAVPLYLSEVAPTHLRGG 172

Query:   121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
             +N  FQ +  IG   AN +NYGT+Q+K  WGWR+SL LAA PA ++TLG  FLPETPNSL
Sbjct:   173 LNMMFQLATTIGIFTANMVNYGTQQLKP-WGWRLSLGLAAFPALLMTLGGYFLPETPNSL 231

Query:   181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM 240
             ++R    ++ + +L ++RGT +V AE  D++ AS  A +I HPF+ I+Q+++RPQL+MA+
Sbjct:   232 VERGLT-ERGRRVLVKLRGTENVNAELQDMVDASELANSIKHPFRNILQKRHRPQLVMAI 290

Query:   241 AIPFFQQVTGINVIAFYAPLLFRTIGLG 268
              +P FQ +TGIN I FYAP+LF+T+G G
Sbjct:   291 CMPMFQILTGINSILFYAPVLFQTMGFG 318

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2009323 AT1G34580 [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 135/273 (49%), Positives = 180/273 (65%)

Query:     1 MEPFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR 60
             M+PFLEKFFP V +K  E  K + YC +DSQLLT+FTSSLYVAGLVAS VAS +T A+GR
Sbjct:    51 MKPFLEKFFPSVLKKASE-AKTNVYCVYDSQLLTAFTSSLYVAGLVASLVASRLTAAYGR 109

Query:    61 KPSVLMXXXXXXXXXXXXXXXVNVYMLIFGRXXXXXXXXFANQSVPLYLSEMAPARYRGA 120
             + ++++                N+ MLI GR        F NQ+ P+YLSE+AP R+RGA
Sbjct:   110 RTTMILGGFTFLFGALINGLAANIAMLISGRILLGFGVGFTNQAAPVYLSEVAPPRWRGA 169

Query:   121 INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL 180
              N GF   I +G +AAN INYGT+  + GW  R+SL LAAVPA+I+T+G LF+ +TP+SL
Sbjct:   170 FNIGFSCFISMGVVAANLINYGTDSHRNGW--RISLGLAAVPAAIMTVGCLFISDTPSSL 227

Query:   181 IQRKSDHQKAKLMLQRVRGTN---DVEAEFDDLLKASSTAKTINHPF--KKIIQRKYRPQ 235
             + R   H +A   L ++RG     DVE E  +L+++S  A         K I+QR+YRP 
Sbjct:   228 LAR-GKHDEAHTSLLKLRGVENIADVETELAELVRSSQLAIEARAELFMKTILQRRYRPH 286

Query:   236 LLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLG 268
             L++A+ IP FQQ+TGI V AFYAP+LFR++G G
Sbjct:   287 LVVAVVIPCFQQLTGITVNAFYAPVLFRSVGFG 319

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	HT4	SubName- Full=Chromosome undetermined scaffold_52, whole genome shotgun sequence; (508 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002307001	SubName- Full=Chromosome undetermined scaffold_129, whole genome shotgun sequence; (506 aa)							•		0.481
	VvSUC11	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (501 aa)							•		0.480

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-56
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-42
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	3e-25
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-17
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-10
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-09
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	6e-09
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	5e-08
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-07
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	1e-05
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	3e-05
PRK10473	392	PRK10473, PRK10473, multidrug efflux system protei	5e-05
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	6e-05
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	2e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	0.002
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	0.003

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  188 bits (479), Expect = 2e-56
 Identities = 93/249 (37%), Positives = 139/249 (55%), Gaps = 7/249 (2%)

Query: 25  YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV-- 82
            C   + L     S   V  L+ S  A  +   FGRK S+L+G   F+ G+ L G A   
Sbjct: 40  ACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGK 99

Query: 83  NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYG 142
           + YMLI GR+++G+GVG  +  VP+Y+SE+AP + RGA+ + +Q  I  G L A  I  G
Sbjct: 100 SFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLG 159

Query: 143 TEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTND 202
             +     GWR+ L L  VPA +L +G LFLPE+P  L+  K   ++A+ +L ++RG +D
Sbjct: 160 LNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVL-KGKLEEARAVLAKLRGVSD 218

Query: 203 VEAEFD---DLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP 259
           V+ E     D L+ S  A+  +        +  R +LLM + +  FQQ+TGIN I +Y+P
Sbjct: 219 VDQEIQEEKDSLERSVEAEKASWLELF-RGKTVRQRLLMGVMLQIFQQLTGINAIFYYSP 277

Query: 260 LLFRTIGLG 268
            +F T+GL 
Sbjct: 278 TIFETLGLS 286

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  150 bits (382), Expect = 4e-42
 Identities = 86/243 (35%), Positives = 128/243 (52%), Gaps = 13/243 (5%)

Query: 36  FTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVY---MLIFGRL 92
             S   V G + +  A  ++  FGRK S+L+    F+ G+ L G A       MLI GR+
Sbjct: 76  VVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRV 135

Query: 93  LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGW 152
           LLG+GVG A+  VP+YLSE+AP   RGA+ + +Q +I  G L A     G   +    GW
Sbjct: 136 LLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGW 195

Query: 153 RVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLK 212
           R+ L L  +PA +L LG  FLPE+P  L+  K   ++A+  L R+RGT+  + E  D L+
Sbjct: 196 RIPLGLQLIPAGLLFLGLFFLPESPRWLV-GKGRVEEARKSLARLRGTSGEDKELLDELE 254

Query: 213 ASSTAKTIN--------HPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT 264
                ++I                +R  R +L + + + +FQQ TGIN I +Y+P +F  
Sbjct: 255 LIDIKRSIEKRSVQPSWGSLFSSTRR-IRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN 313

Query: 265 IGL 267
            G+
Sbjct: 314 AGV 316

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  104 bits (262), Expect = 3e-25
 Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 40/251 (15%)

Query: 42  VAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-------------AVNVYMLI 88
           + G +  + ++     FGR+ S+ +    F   SALG A                V   +
Sbjct: 70  IGGALGGYCSNR----FGRRDSLKIAAVLFFI-SALGSAWPEFGFTSIGPDNTGYVPEFV 124

Query: 89  FGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG 148
             R++ G+GVG A+   P+Y++E+APA  RG + +  QF+I  G L   F+NY    I  
Sbjct: 125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYF---IAR 181

Query: 149 G----W----GWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGT 200
                W    GWR   A  A+PA +  +   F+PETP  L+ R    ++A+ +L+++ G 
Sbjct: 182 SGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQ-EQAEGILRKIMGN 240

Query: 201 NDVEAEFDDLLKASSTAKTINHP---FKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY 257
                   ++  +    +        F   +       +++ + +  FQQ  GINV+ +Y
Sbjct: 241 TLATQALQEIKHSLDHGRKTGGKLLMFGVGV-------IVIGVMLSVFQQFVGINVVLYY 293

Query: 258 APLLFRTIGLG 268
           AP +F+T+G  
Sbjct: 294 APEIFKTLGAS 304

Length = 479

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 3/153 (1%)

Query: 22  ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA 81
           ++      +       S+  +   + S +A  ++  FGR+  +L+G   F  GS L   A
Sbjct: 25  LAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA 84

Query: 82  VNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINY 141
            ++++L+ GR LLG+G G    +    ++E  P + RG     F    G+GAL    +  
Sbjct: 85  SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGG 144

Query: 142 GTEQIKGGWGWRVSLALAAVPASILTLGALFLP 174
               +    GWR    + A+   +L L  LFL 
Sbjct: 145 L---LAESLGWRWLFLILAILGLLLALLLLFLL 174

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 4/142 (2%)

Query: 37  TSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGV 96
            ++  +   +A  +A  ++  FGR+  +L+G   F  G  L   A ++++L+  R+L G+
Sbjct: 38  LTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGL 97

Query: 97  GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSL 156
           G G    +    +++  P   RG          G+GA     +      +   +GWR + 
Sbjct: 98  GGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL---LASLFGWRAAF 154

Query: 157 ALAAVPASILT-LGALFLPETP 177
            + A+ A +   L AL LP  P
Sbjct: 155 LILAILALLAAVLAALLLPRPP 176

Length = 346

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 53/215 (24%), Positives = 88/215 (40%), Gaps = 18/215 (8%)

Query: 58  FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARY 117
            GR+  +L     F   + L   A NV  L+  R L G+G+G    ++   +SE AP R+
Sbjct: 79  IGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF 138

Query: 118 RGAINNGFQFSIGIGALAANFINYGTEQIKGGW-----GWRVSLALAAV-PASILTLGAL 171
           RG           IGA    F+         GW     GWR    +  + P  +L L   
Sbjct: 139 RGTAVGLMFCGYPIGAAVGGFL--------AGWLIPVFGWRSLFYVGGIAPLLLLLLLMR 190

Query: 172 FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRK 231
           FLPE+ + L+ ++ +    + ++  +      EA+   L +  +T  T    FK + Q K
Sbjct: 191 FLPESIDFLVSKRPE--TVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGK 247

Query: 232 YRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIG 266
                ++   + F   V G+  +  + P L   +G
Sbjct: 248 TARITVLLWLLYFMLLV-GVYFLTNWLPKLMVELG 281

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 9/174 (5%)

Query: 29  DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLI 88
           D+  +    S  +V  L+ SFV   ++  FGRK  +L+          L   + N  + +
Sbjct: 125 DAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFL 184

Query: 89  FGRLLLGVGV-GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK 147
             RLL+G+G+ G   Q+V L   E  P + R  +    Q    +G +    + Y      
Sbjct: 185 VFRLLVGMGIGGIWVQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-- 241

Query: 148 GGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTN 201
               WR      ++P  +  L + F+PE+P  LI +    ++A  +LQR+   N
Sbjct: 242 ----WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGR-IEEALKILQRIAKIN 290

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 4/148 (2%)

Query: 28  FDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLA-GSALGGAAVNVYM 86
             +       S   + G++ + +   ++   GR+  +L+ G    A G  L   A ++ +
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267

Query: 87  LIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI 146
           L+   LLLG G+GFA  ++    SE+AP   RG  +  F     +G      +      +
Sbjct: 268 LLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLL---AGLL 324

Query: 147 KGGWGWRVSLALAAVPASILTLGALFLP 174
               G+     + A  A +  L  L LP
Sbjct: 325 LDTGGYGGVFLILAALALLAALLLLLLP 352

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 41/144 (28%), Positives = 63/144 (43%), Gaps = 9/144 (6%)

Query: 39  SLYVAG-----LVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLL 93
            L +AG     L+ S ++  +T  FGRKP +L+G   F+  +A+   + N+ +LI  R L
Sbjct: 1   GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60

Query: 94  LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWR 153
            G G  FA  +    ++++ P   RG         I +G L    +      +    GWR
Sbjct: 61  QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPL---GGVLAQFLGWR 117

Query: 154 VSLALAAVPASI-LTLGALFLPET 176
                 A+ A     L A  LPET
Sbjct: 118 APFLFLAILALAAFILLAFLLPET 141

Length = 141

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 14/147 (9%)

Query: 58  FGRKPS-----VLMGGAAFLAGSALGGAAVNVY---MLIFGRLLLGVGVGFANQSVPLYL 109
            GRK +     ++MG    L G     A + ++   +L+  RL+ G  +G       LYL
Sbjct: 62  IGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYL 121

Query: 110 SEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGG-----WGWRVSLALAAVPAS 164
           +E AP   RG   +  Q    +G L A         + G      WGWR+   ++AV   
Sbjct: 122 AEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVL 181

Query: 165 ILTLGALFLPETPNSLIQRKSDHQKAK 191
           I       L ETP    + +  H+K +
Sbjct: 182 IGLYLRRNLEETP-VFEKAQEKHKKKR 207

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 42  VAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA 101
           +   + + + + +T    R+  +L   A F+  + L   A +  +L+  R L G+  G  
Sbjct: 59  LGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVF 118

Query: 102 NQSVPLYLSEMAPARYRGA----INNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLA 157
                   + + P   RG     +  G   +  +G     F+  G       +GWR +  
Sbjct: 119 WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL--GQL-----FGWRATFL 171

Query: 158 LAAVPASILTLGALFL 173
             AV A +  L    L
Sbjct: 172 AIAVLALLALLLLWKL 187

Length = 394

>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL; Provisional

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 3/73 (4%)

Query: 29  DSQLLTSFTSSLYVAGLVAS-FVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYML 87
           ++QL  +F  S+Y+AG+ A+   A  +    GRKP  + G A F+  S L   A    + 
Sbjct: 37  EAQLHIAF--SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLF 94

Query: 88  IFGRLLLGVGVGF 100
           + GR L G+G G 
Sbjct: 95  LAGRFLQGIGAGC 107

Length = 392

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 23/180 (12%)

Query: 38  SSLYVAGLVASFVASSVTRAFGRKPSVLM-----GGAAFLAGSALGGAAVNVYMLIFGRL 92
             +Y+  +V +F    +    GRK  +L+     G  AF +    G         +F RL
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYG-----FFLFCRL 263

Query: 93  LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFI------NYG-TEQ 145
           L G G+G A   V  Y +E      RG   +       IG + A  +      +YG + Q
Sbjct: 264 LSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQ 323

Query: 146 IKGGW---GWRVSLALAAVPASILTLGAL-FLPETPNSLIQRKSDHQKAKLMLQRVRGTN 201
           +   +    WRV + + A P  +  +GAL F+PE+P   ++    H +A ++L+ +  TN
Sbjct: 324 MGSAYQFHSWRVFVIVCAFP-CVFAIGALTFMPESPRFFLE-NGKHDEAWMILKLIHDTN 381

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 3/105 (2%)

Query: 58  FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARY 117
           FGRKP ++    A+  G+ L G A  V ML   R ++G+G+         Y  E  P   
Sbjct: 80  FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139

Query: 118 RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVP 162
           +   +       GIG + A +           +GWR +  +  +P
Sbjct: 140 KSKASAFLVSGFGIGNIIAAYF---MPSFAEAYGWRAAFFVGLLP 181

Length = 426

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 20/112 (17%), Positives = 42/112 (37%), Gaps = 3/112 (2%)

Query: 28  FDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGS---ALGGAAVNV 84
             + L         + G +   +   ++   GR+  +L+     +  +   AL     + 
Sbjct: 234 LSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESS 293

Query: 85  YMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAA 136
             L+   LLLG G G    ++   +S++AP   RG  +  +  +  +G    
Sbjct: 294 LWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 12/138 (8%)

Query: 58  FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARY 117
            GRK  +++  A F   S     A +   L+  RLL GVG+G A  ++    SE    R 
Sbjct: 77  IGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL 136

Query: 118 RG----AINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLAL-AAVPASILTLGALF 172
           RG     +  G  F   + ++                 WR    +    P  ++ L   +
Sbjct: 137 RGTAVSLMYCGVPFGGALASVIGVLAAGDAA-------WRHIFYVGGVGPLLLVPLLMRW 189

Query: 173 LPETPNSLIQRKSDHQKA 190
           LPE+        +  Q+A
Sbjct: 190 LPESRAFAQAAGAGKQRA 207

Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.98
PRK10642	490	proline/glycine betaine transporter; Provisional	99.97
TIGR00898	505	2A0119 cation transport protein.	99.97
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.97
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.97
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.97
TIGR00891	405	2A0112 putative sialic acid transporter.	99.97
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.97
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.97
PRK12307	426	putative sialic acid transporter; Provisional	99.97
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.96
PRK09705	393	cynX putative cyanate transporter; Provisional	99.96
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.96
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.96
KOG2532	466	consensus Permease of the major facilitator superf	99.96
PRK09952	438	shikimate transporter; Provisional	99.96
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.96
PRK11663	434	regulatory protein UhpC; Provisional	99.96
PRK15075	434	citrate-proton symporter; Provisional	99.96
PRK03545	390	putative arabinose transporter; Provisional	99.96
TIGR00895	398	2A0115 benzoate transport.	99.96
TIGR00893	399	2A0114 d-galactonate transporter.	99.96
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.96
PRK03699	394	putative transporter; Provisional	99.95
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.95
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.95
PRK10091	382	MFS transport protein AraJ; Provisional	99.95
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.95
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.95
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.95
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.95
PLN00028	476	nitrate transmembrane transporter; Provisional	99.95
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.95
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.95
KOG2533	495	consensus Permease of the major facilitator superf	99.95
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.95
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.95
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.95
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.95
PRK03893	496	putative sialic acid transporter; Provisional	99.95
TIGR00900	365	2A0121 H+ Antiporter protein.	99.94
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.94
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.94
PRK10133	438	L-fucose transporter; Provisional	99.94
PRK11043	401	putative transporter; Provisional	99.94
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.94
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.94
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.94
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.94
TIGR00805	633	oat sodium-independent organic anion transporter.	99.94
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.93
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.93
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.93
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.93
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.93
PRK03633	381	putative MFS family transporter protein; Provision	99.93
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.93
PRK10504	471	putative transporter; Provisional	99.93
PRK12382	392	putative transporter; Provisional	99.92
TIGR00901	356	2A0125 AmpG-related permease.	99.92
PRK05122	399	major facilitator superfamily transporter; Provisi	99.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.92
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.92
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.91
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.91
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.9
PRK09874	408	drug efflux system protein MdtG; Provisional	99.9
PRK10489	417	enterobactin exporter EntS; Provisional	99.9
PRK10054	395	putative transporter; Provisional	99.9
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.9
PRK15011	393	sugar efflux transporter B; Provisional	99.9
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.89
PRK11010	491	ampG muropeptide transporter; Validated	99.89
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.88
PRK11902	402	ampG muropeptide transporter; Reviewed	99.88
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.88
KOG2615	451	consensus Permease of the major facilitator superf	99.88
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.87
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.87
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.86
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.85
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.85
PRK09528	420	lacY galactoside permease; Reviewed	99.85
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.85
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.83
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.83
PTZ00207	591	hypothetical protein; Provisional	99.82
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.82
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.81
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.79
PRK10642	490	proline/glycine betaine transporter; Provisional	99.76
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.76
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.73
PF13347	428	MFS_2: MFS/sugar transport protein	99.73
PRK10429	473	melibiose:sodium symporter; Provisional	99.72
PRK09669	444	putative symporter YagG; Provisional	99.72
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.71
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.69
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.65
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.65
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.64
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.63
PRK11462	460	putative transporter; Provisional	99.62
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.62
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.61
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.61
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.61
KOG2563	480	consensus Permease of the major facilitator superf	99.6
PRK09848	448	glucuronide transporter; Provisional	99.59
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.59
COG2211	467	MelB Na+/melibiose symporter and related transport	99.57
KOG3626	735	consensus Organic anion transporter [Secondary met	99.55
PRK15011	393	sugar efflux transporter B; Provisional	99.54
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.51
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.51
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.5
PRK09528	420	lacY galactoside permease; Reviewed	99.5
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.49
PRK05122	399	major facilitator superfamily transporter; Provisi	99.48
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.47
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.46
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.44
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.43
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.43
PRK03893	496	putative sialic acid transporter; Provisional	99.41
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.41
PRK09952	438	shikimate transporter; Provisional	99.4
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.4
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.4
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.39
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.37
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.37
PRK03633	381	putative MFS family transporter protein; Provision	99.36
PRK10489	417	enterobactin exporter EntS; Provisional	99.36
PRK09874	408	drug efflux system protein MdtG; Provisional	99.35
PRK12382	392	putative transporter; Provisional	99.35
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.34
PRK03545	390	putative arabinose transporter; Provisional	99.34
PRK03699	394	putative transporter; Provisional	99.33
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.33
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.31
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.29
TIGR00891	405	2A0112 putative sialic acid transporter.	99.29
TIGR00893	399	2A0114 d-galactonate transporter.	99.28
PRK09705	393	cynX putative cyanate transporter; Provisional	99.28
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.27
PRK11010	491	ampG muropeptide transporter; Validated	99.26
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.26
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.25
PLN00028	476	nitrate transmembrane transporter; Provisional	99.24
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.24
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.23
TIGR00898	505	2A0119 cation transport protein.	99.22
PRK12307	426	putative sialic acid transporter; Provisional	99.21
PRK10504	471	putative transporter; Provisional	99.2
TIGR00900	365	2A0121 H+ Antiporter protein.	99.2
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.2
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.19
PRK15075	434	citrate-proton symporter; Provisional	99.18
KOG0569	485	consensus Permease of the major facilitator superf	99.18
TIGR00895	398	2A0115 benzoate transport.	99.18
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.17
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.17
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.15
PRK11663	434	regulatory protein UhpC; Provisional	99.14
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.11
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.1
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	99.1
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.09
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.08
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.06
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.06
PRK09848	448	glucuronide transporter; Provisional	99.05
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.03
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.02
PRK10091	382	MFS transport protein AraJ; Provisional	99.01
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.01
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.0
PRK11902	402	ampG muropeptide transporter; Reviewed	99.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.99
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.99
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.99
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.98
COG0477	338	ProP Permeases of the major facilitator superfamil	98.97
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.97
PRK10054	395	putative transporter; Provisional	98.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.96
TIGR00901	356	2A0125 AmpG-related permease.	98.96
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.95
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.93
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.92
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.91
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.91
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.9
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.89
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.89
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.89
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.88
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.86
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.85
PRK10429	473	melibiose:sodium symporter; Provisional	98.85
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.83
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.81
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.8
PRK09669	444	putative symporter YagG; Provisional	98.77
PRK10133	438	L-fucose transporter; Provisional	98.77
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.74
PRK11043	401	putative transporter; Provisional	98.73
PF13347	428	MFS_2: MFS/sugar transport protein	98.71
COG2211	467	MelB Na+/melibiose symporter and related transport	98.68
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.66
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.63
KOG3098	461	consensus Uncharacterized conserved protein [Funct	98.6
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.55
KOG0254	513	consensus Predicted transporter (major facilitator	98.53
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.51
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.5
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.5
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.44
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.42
KOG3762	618	consensus Predicted transporter [General function	98.4
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.4
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.39
PRK11462	460	putative transporter; Provisional	98.37
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.34
KOG0637	498	consensus Sucrose transporter and related proteins	98.34
KOG2532	466	consensus Permease of the major facilitator superf	98.33
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.33
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.32
PF12832	77	MFS_1_like: MFS_1 like family	98.28
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.25
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.21
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.17
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.1
KOG3810	433	consensus Micronutrient transporters (folate trans	98.09
PF12832	77	MFS_1_like: MFS_1 like family	98.08
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.02
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.99
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.92
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.91
KOG2615	451	consensus Permease of the major facilitator superf	97.71
PTZ00207	591	hypothetical protein; Provisional	97.64
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.61
KOG2533	495	consensus Permease of the major facilitator superf	97.48
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.45
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.39
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	97.36
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	97.33
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.22
COG3202	509	ATP/ADP translocase [Energy production and convers	96.92
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.69
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.63
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	96.57
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	96.51
KOG2563	480	consensus Permease of the major facilitator superf	96.48
PRK03612	521	spermidine synthase; Provisional	96.46
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.45
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.39
KOG3762	618	consensus Predicted transporter [General function	96.29
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.17
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	95.86
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	95.7
TIGR00805	633	oat sodium-independent organic anion transporter.	95.53
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.18
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	94.72
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.63
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.15
KOG1330	493	consensus Sugar transporter/spinster transmembrane	92.02
KOG3880	409	consensus Predicted small molecule transporter inv	90.31
KOG2881	294	consensus Predicted membrane protein [Function unk	89.9
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	88.9
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	86.83
KOG3097	390	consensus Predicted membrane protein [Function unk	86.72
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	86.59
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	85.64
KOG0637	498	consensus Sucrose transporter and related proteins	85.56
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	84.13
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	82.91
KOG3880	409	consensus Predicted small molecule transporter inv	81.12

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.1e-35  Score=252.68  Aligned_cols=300  Identities=27%  Similarity=0.446  Sum_probs=248.8

Q ss_pred             hhhhhhhhhhHhhhccccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh--
Q 021634            3 PFLEKFFPEVHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA--   80 (310)
Q Consensus         3 ~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--   80 (310)
                      +.+++|.++.+...+..+.-.   +.-....+.+.+++.+|.++|+++.++++||+|||..+.++.++..++.++..+  
T Consensus        35 ~~i~~f~n~t~~~r~g~~~s~---~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~  111 (485)
T KOG0569|consen   35 ELIKSFINETLIERYGLPLSD---STLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSK  111 (485)
T ss_pred             HHHHHHHHHHHHHhcCCCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            345666655555444321100   001234678889999999999999999999999999999999998888877665  


Q ss_pred             -hhhHHHHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCC-CchhHHHHHh
Q 021634           81 -AVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG-GWGWRVSLAL  158 (310)
Q Consensus        81 -~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~wr~~~~~  158 (310)
                       .+++.+++++|++.|+..|......+.|+.|..|++.||....+.+.+..+|.+++..++  +.+..+ ...|++.+.+
T Consensus       112 ~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~--l~~ilGt~~~W~~l~~~  189 (485)
T KOG0569|consen  112 SAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG--LPSLLGTEDLWPYLLAF  189 (485)
T ss_pred             HhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc--cHHhcCCCcchHHHHHH
Confidence             478999999999999999999999999999999999999999999999999999997776  334433 3469999999


Q ss_pred             hHHHHHHHHHHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhh---ccccccchhhhhccc-cchh
Q 021634          159 AAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASS---TAKTINHPFKKIIQR-KYRP  234 (310)
Q Consensus       159 ~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~  234 (310)
                      ..+++++..+...++||||||+..++.+.++|++.++.+++.++.+++.++..++.+   .+++++.++++.+++ ..++
T Consensus       190 ~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~  269 (485)
T KOG0569|consen  190 PLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRR  269 (485)
T ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhH
Confidence            999999999999999999999998655599999999999999876665554433322   222355678888875 5677


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          235 QLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      +..+.+.+....++.+.+....|...++++.|++++++.+.....+...++..+++.+  ++||+|||++++.++
T Consensus       270 ~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~--lid~~gRRpLll~~~  342 (485)
T KOG0569|consen  270 PLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPF--LIDRLGRRPLLLISL  342 (485)
T ss_pred             HHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCCcHHHHHHH
Confidence            7788888889999999999999999999999999999999999999999999999999  999999999998764

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=1.8e-32  Score=244.18  Aligned_cols=280  Identities=18%  Similarity=0.232  Sum_probs=204.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhh------HHHHHHHHHHHhhccc
Q 021634           26 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN------VYMLIFGRLLLGVGVG   99 (310)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~   99 (310)
                      .+.+..+.+++.+...++..++++++|+++||+|||+++.++.++..++.++++++++      ++.++++|++.|++.|
T Consensus        51 ~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g  130 (502)
T TIGR00887        51 GPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIG  130 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHh
Confidence            4566778899999999999999999999999999999999999999999998888765      7889999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc--------------------CCCchhHHHHHhh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI--------------------KGGWGWRVSLALA  159 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------------------~~~~~wr~~~~~~  159 (310)
                      ...+....+++|++|+++|++++++.+....+|.++++.++..+...                    ..+++||+.+.+.
T Consensus       131 ~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~  210 (502)
T TIGR00887       131 GDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFG  210 (502)
T ss_pred             hhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHH
Confidence            99999999999999999999999999999999999988887654321                    1124799999999


Q ss_pred             HHHHHHHHHHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchh---HH
Q 021634          160 AVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRP---QL  236 (310)
Q Consensus       160 ~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  236 (310)
                      +++.++..+..+++||||+|+..++++.+++.+...+....+..++ .++.++..++++..+.++++.+++...+   +.
T Consensus       211 ~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  289 (502)
T TIGR00887       211 AVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKH  289 (502)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHH
Confidence            9888888777888999999998877755556655555443221110 1111110011111123567766532211   22


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCchhHHH------------HHHHHHhhhhhhhhHHHHHHHHHHhccchh
Q 021634          237 LMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQ------------LSKWIECGGSIGFGRNMWVKWMNRVRWRKL  304 (310)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------------~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~  304 (310)
                      .+.....++.....++....+.|.++++.|+++.+++.            ...+..++.+++.+++++  ++||+|||++
T Consensus       290 ~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~--l~dr~gRR~~  367 (502)
T TIGR00887       290 LLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVF--LVDIIGRKPI  367 (502)
T ss_pred             HHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhcchhH
Confidence            33233333333445566777899999888887653221            233344566778888899  9999999998


Q ss_pred             hhhc
Q 021634          305 DIYT  308 (310)
Q Consensus       305 ~~~~  308 (310)
                      ++.+
T Consensus       368 l~~~  371 (502)
T TIGR00887       368 QLMG  371 (502)
T ss_pred             HHHH
Confidence            7764

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1.8e-31  Score=242.26  Aligned_cols=243  Identities=18%  Similarity=0.225  Sum_probs=192.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.++++++..+.+++.+++.++.+++++++|+++||+|||+.+++++++.+++.++++++++++.++++|++.|++.+
T Consensus       191 p~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g  270 (742)
T TIGR01299       191 PSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIG  270 (742)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            66788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC----------CCchhHHHHHhhHHHHHHHHHH
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK----------GGWGWRVSLALAAVPASILTLG  169 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------~~~~wr~~~~~~~~~~~~~~~~  169 (310)
                      +..+....++.|++|+++|++.++++..+..+|.++++.++..+....          ...+||+.+++.+++.++.++.
T Consensus       271 ~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~  350 (742)
T TIGR01299       271 GAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGA  350 (742)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988776554321          1247999999998888888777


Q ss_pred             hhcccCCchhhHhccCcHHHHHHHHHHhcCCcch-----HHHH--HHHHHhhh--------ccccc--------------
Q 021634          170 ALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDV-----EAEF--DDLLKASS--------TAKTI--------------  220 (310)
Q Consensus       170 ~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~--------~~~~~--------------  220 (310)
                      .+++||+|+|+..+++ .+++.+.++++...+..     ....  ++.+...+        .+...              
T Consensus       351 ~~~lPESPrwL~~~gr-~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (742)
T TIGR01299       351 LTFMPESPRFFLENGK-HDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGG  429 (742)
T ss_pred             HHHcCCCHHHHHHCCC-HHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhh
Confidence            8889999999988877 88888888887765421     1111  11111000        00000              


Q ss_pred             --cchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 021634          221 --NHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT  264 (310)
Q Consensus       221 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (310)
                        ..+++++++.+.++++++ +.+.++.....++++..|+|.++++
T Consensus       430 ~~~~~~~~lf~~~~~~~tl~-l~~~wf~~~~~yygl~~w~P~~~~~  474 (742)
T TIGR01299       430 GIWGNFLRCFNPEVREITIK-LMGVWFTLSFGYYGLSVWFPDMIKH  474 (742)
T ss_pred             hHHHHHHHHcCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              013455666666666555 4455566667889999999988643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=6.5e-31  Score=233.37  Aligned_cols=282  Identities=23%  Similarity=0.347  Sum_probs=210.4

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh------------hhHHHHH
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA------------VNVYMLI   88 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------------~~~~~l~   88 (310)
                      ....+++.++.+.+++.+++.++..++++++|+++||+|||++++++.++..++.+.++++            +.++.++
T Consensus        45 ~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~  124 (479)
T PRK10077         45 PQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFV  124 (479)
T ss_pred             cccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHH
Confidence            3455679999999999999999999999999999999999999999999999888877653            2356778


Q ss_pred             HHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc-----CCCchhHHHHHhhHHHH
Q 021634           89 FGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI-----KGGWGWRVSLALAAVPA  163 (310)
Q Consensus        89 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~wr~~~~~~~~~~  163 (310)
                      ++|+++|++.|...+....+++|++|+++|++++++.+.+..+|.++++.++..+...     .+.++||+.|++.+++.
T Consensus       125 ~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~  204 (479)
T PRK10077        125 IYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPA  204 (479)
T ss_pred             HHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988877655421     23468999999988888


Q ss_pred             HHHHHHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHH
Q 021634          164 SILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIP  243 (310)
Q Consensus       164 ~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (310)
                      ++..+..+++||+|+++..+++ .+++++..++..+.++.....++..+...+++..   .+..+. .............
T Consensus       205 ~~~~~~~~~l~~s~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~  279 (479)
T PRK10077        205 LLFLMLLYFVPETPRYLMSRGK-QEQAEGILRKIMGNTLATQALQEIKHSLDHGRKT---GGKLLM-FGVGVIVIGVMLS  279 (479)
T ss_pred             HHHHHHHHcCCCCcHHHHHcCC-HHHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhh---hhhhcc-hhHHHHHHHHHHH
Confidence            7777667779999988766555 5666655555544433222222222111111100   011111 1111112222233


Q ss_pred             HHHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          244 FFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      .+.+..+++...++.|.+.++.|.+...........++..+++.+++++  ++||+|||++++.+.
T Consensus       280 ~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~--l~dr~g~r~~~i~~~  343 (479)
T PRK10077        280 VFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIM--TVDKFGRKPLQIIGA  343 (479)
T ss_pred             HHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHH--HHHHhcChHHHHHhH
Confidence            4445555667778889999989998888888888888899999999999  999999999887653

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=3.9e-31  Score=235.73  Aligned_cols=273  Identities=35%  Similarity=0.550  Sum_probs=232.2

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhh
Q 021634           31 QLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLS  110 (310)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~  110 (310)
                      .+.+++.++..++..+++++.|+++|++|||+.++++.+...++.+++++++|++.++++|+++|+|.|....+.+.|++
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s  168 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS  168 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence            46699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchhhHhccCcHHHH
Q 021634          111 EMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKA  190 (310)
Q Consensus       111 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~  190 (310)
                      |..|++.||...+..+....+|..++..++....+. . ++||..+.+..+++++..+..+++||+|+|+.++++ .+++
T Consensus       169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~-~-~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~-~~~a  245 (513)
T KOG0254|consen  169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKV-Y-AGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGR-LEEA  245 (513)
T ss_pred             hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccC-C-ccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCC-hHHH
Confidence            999999999999999999999999997776666543 2 579999999999999988888889999999999777 8889


Q ss_pred             HHHHHHhcC--CcchHHHHHHHHHhhhcc---ccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc
Q 021634          191 KLMLQRVRG--TNDVEAEFDDLLKASSTA---KTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTI  265 (310)
Q Consensus       191 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (310)
                      +..+.++.+  +.+.+.+.++.+.+...+   ...+..+++++++..+++..+...+..+.++.+++...+|.+.+++..
T Consensus       246 ~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~  325 (513)
T KOG0254|consen  246 KRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA  325 (513)
T ss_pred             HHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc
Confidence            999888888  344444444444211111   111224667776667888888899999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          266 GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       266 g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      |.+... .....+.++..+++.+++.+  +.||+|||++++.|.
T Consensus       326 g~~~~~-~~~~~~~~~v~~~~t~~~~~--lvd~~gRr~lll~s~  366 (513)
T KOG0254|consen  326 GLKSDT-FLASIILGVVNFLGTLVATY--LVDRFGRRKLLLFGA  366 (513)
T ss_pred             CCCCch-HHHHHHHHHHHHHHHHHHHH--HHHHhccHHHHHHhH
Confidence            887655 56666677788888888888  999999999998764

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.98  E-value=2.1e-30  Score=225.22  Aligned_cols=273  Identities=15%  Similarity=0.188  Sum_probs=203.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +.+++|+|+++++.+++.+++.+++.+++++.|+++||+|||+++..+.++..+++++++++++++.+++.|++.|++.+
T Consensus        32 ~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  111 (412)
T TIGR02332        32 LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEA  111 (412)
T ss_pred             HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc---CCCchhHHHHHhhHHHHHHHHH-HhhcccC
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI---KGGWGWRVSLALAAVPASILTL-GALFLPE  175 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~wr~~~~~~~~~~~~~~~-~~~~~~e  175 (310)
                      ...+....++.|++|+++|++++++++.+.++|..+++.+++.+...   .+..+||+.|++.+++.++..+ .++++||
T Consensus       112 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~  191 (412)
T TIGR02332       112 GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD  191 (412)
T ss_pred             hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence            98888889999999999999999999999999999999998776532   2346899999998888776544 4456888


Q ss_pred             CchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHh-hhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHH
Q 021634          176 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKA-SSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVI  254 (310)
Q Consensus       176 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      +|+...  ..+.++.+...+..+.+...   .++.++. .+++...+..+++.+     ++.++...+.+++....++.+
T Consensus       192 ~p~~~~--~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  261 (412)
T TIGR02332       192 SPDKAK--WLDEEDKKALKEMIDNDQLT---LEQPEGAFAHAAMPQRSMLREIF-----TPAIMLYTLAYFCLTNTLSAI  261 (412)
T ss_pred             CcccCC--CCCHHHHHHHHHHHHhcccc---ccccccccccccccHHHHHHHhc-----ChHHHHHHHHHHHHHHHHHHH
Confidence            874310  00011111111111100000   0000000 000000011222222     233444555555666667788


Q ss_pred             HHhHHHHHHHc--CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchh
Q 021634          255 AFYAPLLFRTI--GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKL  304 (310)
Q Consensus       255 ~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~  304 (310)
                      ..|.|.++++.  |.++.+++.......++..+|.++.++  ++||+++|+.
T Consensus       262 ~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~--l~dr~~~r~~  311 (412)
T TIGR02332       262 NIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSR--HSDRLKERKH  311 (412)
T ss_pred             HHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHH--HhcccCccHH
Confidence            99999999875  678888899999999999999999999  9999997764

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.97  E-value=3.9e-30  Score=228.41  Aligned_cols=263  Identities=14%  Similarity=0.123  Sum_probs=190.9

Q ss_pred             cccccccccchhH----HHH--HHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHH-------
Q 021634           20 TKISNYCKFDSQL----LTS--FTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYM-------   86 (310)
Q Consensus        20 ~~i~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-------   86 (310)
                      +.+.+++..+.++    .+.  ..++.++++.++++++|+++||+|||+++.++++++++++++++++++++.       
T Consensus        40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~  119 (490)
T PRK10642         40 YALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPI  119 (490)
T ss_pred             HHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            5566666533221    222  247788999999999999999999999999999999999999999999874       


Q ss_pred             -HHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc-----CCCchhHHHHHhhH
Q 021634           87 -LIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI-----KGGWGWRVSLALAA  160 (310)
Q Consensus        87 -l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~wr~~~~~~~  160 (310)
                       ++++|+++|++.|..++....+++|++|+++|+++.++...+..+|..+++.+...+...     ..++|||+.|++.+
T Consensus       120 ~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~  199 (490)
T PRK10642        120 LLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIAL  199 (490)
T ss_pred             HHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHH
Confidence             788999999999999999999999999999999999999988888888877665433321     12478999999987


Q ss_pred             HHHHHHHHHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHH
Q 021634          161 VPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM  240 (310)
Q Consensus       161 ~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (310)
                      ++.++..+....+||+|++...+++ .++..       .            +.  .++..+.++++.+++ .++.... .
T Consensus       200 ~~~l~~~~~~~~~~esp~~~~~~~~-~~~~~-------~------------~~--~~~~~~~~~~~~~~~-~~~~~~~-~  255 (490)
T PRK10642        200 PLGIIGLYLRHALEETPAFQQHVDK-LEQGD-------R------------EG--LQDGPKVSFKEIATK-HWRSLLT-C  255 (490)
T ss_pred             HHHHHHHHHHHcCCCChhHHHHHHh-hhhhc-------c------------cc--ccccccCCHHHHHHH-hHHHHHH-H
Confidence            7666655555678999876432211 00000       0            00  000112244555543 2222222 2


Q ss_pred             HHHHHHHhhhHHHHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          241 AIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      ....+.....++.+..|.|.++++ .|++..+.........++..++.++.++  ++||+|||+.++.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~--l~dr~grr~~~~~~  322 (490)
T PRK10642        256 IGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGL--LSDRFGRRPFVILG  322 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccHHHHHHH
Confidence            222233344567778899999954 5998888888878888889999999999  99999999987654

>TIGR00898 2A0119 cation transport protein

Probab=99.97  E-value=2.5e-30  Score=231.04  Aligned_cols=274  Identities=18%  Similarity=0.200  Sum_probs=206.2

Q ss_pred             ccccccccccc---hhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Q 021634           19 DTKISNYCKFD---SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLG   95 (310)
Q Consensus        19 ~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G   95 (310)
                      .+.+.+|++++   +.+.++..+++.++..+++++.|+++||+|||++++++.++..++.++.+++++++.+++.|++.|
T Consensus       112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G  191 (505)
T TIGR00898       112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG  191 (505)
T ss_pred             cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            46789999999   899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccC
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  175 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  175 (310)
                      ++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+.      +||+.+++.+++.++..+..+++||
T Consensus       192 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------~wr~~~~~~~i~~~~~~~~~~~~~e  265 (505)
T TIGR00898       192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------DWRWLQLAVSLPTFLFFLLSWFVPE  265 (505)
T ss_pred             hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999887654      3999999999888887777788999


Q ss_pred             CchhhHhccCcHHHHHHHHHHhcCCcch---HHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHH
Q 021634          176 TPNSLIQRKSDHQKAKLMLQRVRGTNDV---EAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGIN  252 (310)
Q Consensus       176 s~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (310)
                      +|+|+..+++ .+++.+..++..+.++.   .+..+...++...+++.+.++++.++++..+...+...+.++.....++
T Consensus       266 sp~~l~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  344 (505)
T TIGR00898       266 SPRWLISQGR-IEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYY  344 (505)
T ss_pred             ChHHHHHCCC-HHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988777 66666665554433221   1111111011111111234566777665544444444333333222222


Q ss_pred             HHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          253 VIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       253 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .    .+.+..+.+.+.   .....+.++..+++.++.++  +.||+|||+.+.++
T Consensus       345 ~----~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~--l~dr~grr~~~~~~  391 (505)
T TIGR00898       345 G----LVLDLGNLGGNI---YLDLFISGLVELPAKLITLL--LIDRLGRRYTMAAS  391 (505)
T ss_pred             H----HhccccccCCCh---HHHHHHHHHHHHHHHHHHHH--HHHHhCCHHHHHHH
Confidence            2    222333444443   23344556778888999999  99999999987764

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.97  E-value=8.2e-29  Score=219.60  Aligned_cols=275  Identities=32%  Similarity=0.549  Sum_probs=206.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHhhcccccccc
Q 021634           28 FDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA---VNVYMLIFGRLLLGVGVGFANQS  104 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~  104 (310)
                      .+..+.+++.+++.++..++++++|+++||+|||++++.+.++..++.+++.+.   .+++.++++|++.|++.+...+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~  147 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASAL  147 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhH
Confidence            458999999999999999999999999999999999999999999999888554   44568999999999999999999


Q ss_pred             hhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHH---hhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchhhH
Q 021634          105 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFIN---YGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLI  181 (310)
Q Consensus       105 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~  181 (310)
                      ...++.|++|+++|++++++.+.+..+|..+++.++   ....   +..+||+.|++.++..++..+..+++||+|++..
T Consensus       148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~---~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~  224 (481)
T TIGR00879       148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLN---NTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLV  224 (481)
T ss_pred             HHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCC---CCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            999999999999999999999999999999999997   3322   3458999999977777766666777999988765


Q ss_pred             hccCcHHHHHHHHHHhcCCcchHHHHHH----HHH-hhhccccccchhhhhcccc--chhHHHHHHHHHHHHHhhhHHHH
Q 021634          182 QRKSDHQKAKLMLQRVRGTNDVEAEFDD----LLK-ASSTAKTINHPFKKIIQRK--YRPQLLMAMAIPFFQQVTGINVI  254 (310)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      .+++ .+++++..++..+.++.+....+    ... ...+.+..+..+++.++..  ..++.++...+.++......+..
T Consensus       225 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (481)
T TIGR00879       225 GKGR-VEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAI  303 (481)
T ss_pred             HcCC-hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeeh
Confidence            5544 34444443333322211111100    000 0000011111233333321  23555555556666655566677


Q ss_pred             HHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          255 AFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       255 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      ..+.|.+.++.|++..+++.......++.+++.+++++  +.||++||+.+..+
T Consensus       304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~d~~~~~~~~~~~  355 (481)
T TIGR00879       304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIF--LVDRFGRRPLLLIG  355 (481)
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHH
Confidence            88899999999999988999999999999999999999  99999999987754

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1e-29  Score=211.70  Aligned_cols=244  Identities=16%  Similarity=0.144  Sum_probs=198.6

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      -|++.+|+++|..+.|++.++|.++..+++++...++||+.||++++..+.+++++++++++++||+.++++|++.|+..
T Consensus        36 Lp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~  115 (394)
T COG2814          36 LPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAH  115 (394)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es~  177 (310)
                      |..++....+..+..|+++|++++++...+..++.++|.+++.++.+.   +|||..|++.+.++++..+..+. +|  |
T Consensus       116 G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~---~GWR~~F~~ia~l~ll~~~~~~~~lP--~  190 (394)
T COG2814         116 GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL---FGWRATFLAIAVLALLALLLLWKLLP--P  190 (394)
T ss_pred             HHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHhCC--C
Confidence            999999999999999999999999999999999999999999999865   57999999999999887766544 77  2


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      +....+..  .                               ...+..+.++++.    ++...+..+..+.+.+....|
T Consensus       191 ~~~~~~~~--~-------------------------------~~~~~~~~l~~p~----v~~~l~~t~l~~~g~F~~ftY  233 (394)
T COG2814         191 SEISGSLP--G-------------------------------PLRTLLRLLRRPG----VLLGLLATFLFMTGHFALYTY  233 (394)
T ss_pred             ccCCCCCC--c-------------------------------chhHHHHHhcCch----HHHHHHHHHHHHcchhhhHHh
Confidence            11100000  0                               0001122333322    222333333333444555555


Q ss_pred             HHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          258 APLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       258 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      ...++++ .|++++...+....+++++++|+.++|+  +.|| +.|+.+..
T Consensus       234 i~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGr--l~dr-~~~~~l~~  281 (394)
T COG2814         234 IRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGR--LADR-GPRRALIA  281 (394)
T ss_pred             HHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhh--hccc-cchhHHHH
Confidence            5666655 5999999999999999999999999999  9999 77776654

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.1e-29  Score=209.05  Aligned_cols=266  Identities=16%  Similarity=0.127  Sum_probs=216.6

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|++.+|.++|.+|.+.+.+.+.+.+.++..+.|.++||.+.|..+.+++++.++.+++++++++.+.+.+.-++.|.++
T Consensus        52 ~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQ  131 (448)
T COG2271          52 MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQ  131 (448)
T ss_pred             cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHH--hhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccC
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFIN--YGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPE  175 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~e  175 (310)
                      |..+|.+...++.|+|+++||+..++++.+.++|+.+.+++.  +++..   +.+||..|++.++++++..+..++ .+|
T Consensus       132 g~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~---~~~w~~~f~~pgiiaiival~~~~~~rd  208 (448)
T COG2271         132 GMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF---HGGWRAAFYFPGIIAIIVALILLFLLRD  208 (448)
T ss_pred             cCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999998887  44443   347999999999999887766655 788


Q ss_pred             CchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhh-hccccchhHHHHHHHHHHHHHhhhHHHH
Q 021634          176 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKK-IIQRKYRPQLLMAMAIPFFQQVTGINVI  254 (310)
Q Consensus       176 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      +|+..--..  .|+.+       ++.        .+...++++.+..+.++ .++-..+++.++.+.+..++....-+++
T Consensus       209 ~Pqs~GLP~--ie~~~-------~d~--------~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi  271 (448)
T COG2271         209 RPQSEGLPP--IEEYR-------GDP--------LEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGI  271 (448)
T ss_pred             CccccCCCC--HHHhh-------cCc--------hhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence            875321111  11111       000        00000111111123333 3445567788888888888888888999


Q ss_pred             HHhHHHHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHh--ccchhhh
Q 021634          255 AFYAPLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRV--RWRKLDI  306 (310)
Q Consensus       255 ~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~--g~r~~~~  306 (310)
                      +.|.|.|+.|. |++..++....+..-.++++|.+++|+  ++||+  |||....
T Consensus       272 ~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~Gw--lSDklfkgrR~p~~  324 (448)
T COG2271         272 NDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGW--LSDKLFKGRRGPMA  324 (448)
T ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHH--HHHHhcccccchHH
Confidence            99999999665 999999999999999999999999999  99996  5776543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.97  E-value=1.3e-28  Score=214.04  Aligned_cols=274  Identities=15%  Similarity=0.191  Sum_probs=198.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +.+++++|+++.+.+++.+++.++..+++++.|+++||+|||++++.+.++.++++++++++++++.+++.|++.|++.+
T Consensus        36 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~  115 (405)
T TIGR00891        36 AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMG  115 (405)
T ss_pred             HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhh
Confidence            66889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS  179 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~  179 (310)
                      ...+....++.|++|+++|+++.++.+.+..+|..+++.++..+....+ .+||+.|++.++..++..+....+||++++
T Consensus       116 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~-~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  194 (405)
T TIGR00891       116 GEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG-DGWRALFFISILPIIFALWLRKNIPEAEDW  194 (405)
T ss_pred             hhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            9999999999999999999999999999999999999999877654322 259999988776666655555668887654


Q ss_pred             hHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 021634          180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP  259 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (310)
                      ...+++ .++..+..++..+.++.      .++.   .++.....++.  ....++.+...................+.|
T Consensus       195 ~~~~~~-~~~~~~~~~~~~~~~~~------~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (405)
T TIGR00891       195 KEKHAG-KALVRTMVDILYGGEHR------IANI---VMTLAAAMVQS--AGKRWPTFVYLVVLVLFANLYSHPIQDLLP  262 (405)
T ss_pred             HHHhhh-hhhhhhHHHHHhccchh------hhhh---hhhhhHHhhhh--hhhhhHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            322211 11111111111100000      0000   00000001110  111112222222222222223345566778


Q ss_pred             HHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          260 LLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       260 ~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .+++ +.|+++.+.+.+.....++.+++.++.++  +.||+|||+.+.++
T Consensus       263 ~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~--l~dr~g~~~~~~~~  310 (405)
T TIGR00891       263 TYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGF--LGDWLGRRKAYVCS  310 (405)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCchhhhHHH
Confidence            8875 56999999999999999999999999999  99999999987654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.97  E-value=9.7e-35  Score=255.93  Aligned_cols=276  Identities=30%  Similarity=0.573  Sum_probs=224.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHhhcccccccch
Q 021634           29 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV---NVYMLIFGRLLLGVGVGFANQSV  105 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~  105 (310)
                      ++.+.+++.+...+|..+|++++|+++||+|||+.+.++.++..++.++.++++   +++.+.++|++.|++.|...+..
T Consensus        44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~  123 (451)
T PF00083_consen   44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS  123 (451)
T ss_pred             hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            456789999999999999999999999999999999999999999999999999   99999999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchhhHhccC
Q 021634          106 PLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRKS  185 (310)
Q Consensus       106 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~  185 (310)
                      ..++.|..|+++|++..++.+.+..+|.+++..++.......+++.||..+.+.++++++..+..+++||||+|+..+++
T Consensus       124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~  203 (451)
T PF00083_consen  124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR  203 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc
Confidence            99999999999999999999999999999988887766544444679999999999998888888889999999988888


Q ss_pred             cHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccc-hhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH
Q 021634          186 DHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKY-RPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT  264 (310)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (310)
                       .++|++..++.++.+..+++.++..++.++.++.+.+++++++.+. +++......+..+.+..+.+....|.+.++++
T Consensus       204 -~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~  282 (451)
T PF00083_consen  204 -DEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN  282 (451)
T ss_pred             -ccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence             6688888888665544444443333333333222356677776543 55666666666677677777788888888888


Q ss_pred             cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          265 IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       265 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      .|.+..  ........+...++.+++.+  ++||+|||++++.+.
T Consensus       283 ~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~GRr~~~i~~~  323 (451)
T PF00083_consen  283 AGISNS--FLATLILGLVNFLGTLLAIF--LIDRFGRRKLLIIGL  323 (451)
T ss_pred             cccccc--cccccccccccccccccccc--ccccccccccccccc
Confidence            887776  33344555667778888888  999999999988764

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.97  E-value=1.5e-28  Score=215.15  Aligned_cols=249  Identities=16%  Similarity=0.116  Sum_probs=182.3

Q ss_pred             cccccccc---cchhHHHH---HHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHH--------
Q 021634           20 TKISNYCK---FDSQLLTS---FTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVY--------   85 (310)
Q Consensus        20 ~~i~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------   85 (310)
                      +.+.+|++   .+..+.+.   ..+..+++..++++++|+++||+|||+++..+.+++.++++++++++++.        
T Consensus        46 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (432)
T PRK10406         46 LYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPA  125 (432)
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHH
Confidence            56667763   45554444   34445555569999999999999999999999999999999999888764        


Q ss_pred             HHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC-----CCchhHHHHHhhH
Q 021634           86 MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK-----GGWGWRVSLALAA  160 (310)
Q Consensus        86 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~wr~~~~~~~  160 (310)
                      .++++|+++|++.|..++....+++|++|+++|+++.++.+.+...|.++++.+...+....     ..+|||+.|++.+
T Consensus       126 ~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~  205 (432)
T PRK10406        126 LLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGA  205 (432)
T ss_pred             HHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence            58889999999999999999999999999999999999988888888888777655443321     2468999999988


Q ss_pred             HHHHHHHHHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHH
Q 021634          161 VPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM  240 (310)
Q Consensus       161 ~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (310)
                      ++.++.......+||+|++..+         +                      .   ++..++++.+++   ++.+...
T Consensus       206 ~~~ll~~~~~~~~~e~~~~~~~---------~----------------------~---~~~~~~~~l~~~---~~~~~~~  248 (432)
T PRK10406        206 VLAVVALWLRRQLDETSQQETR---------A----------------------L---KEAGSLKGLWRN---RRAFIMV  248 (432)
T ss_pred             HHHHHHHHHHhcCCCCchHHHh---------h----------------------h---cccccHHHHHhh---HHHHHHH
Confidence            8877665555557776542100         0                      0   001134444432   1222222


Q ss_pred             HHHHHHHhhhHHHHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          241 AIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      ....+.....++.+..|.|.++++ .|.+..+.+....+..+...++..+.++  ++||++||+.++.
T Consensus       249 ~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~--l~Dr~grr~~~~~  314 (432)
T PRK10406        249 LGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGA--LSDKIGRRTSMLC  314 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCchHHHHH
Confidence            222223234556678899999865 5999888888888888888888888899  9999999987654

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.97  E-value=2.5e-28  Score=213.73  Aligned_cols=262  Identities=18%  Similarity=0.223  Sum_probs=196.3

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .+.+++++|+|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++.+++++++.++++|++.|++.
T Consensus        41 ~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~  120 (426)
T PRK12307         41 MYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGM  120 (426)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCch
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPN  178 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~  178 (310)
                      +...+....++.|++|+++|+++.++...+..+|.++++.+...+.+   ..+||+.|++..+..++........||+++
T Consensus       121 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~---~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~  197 (426)
T PRK12307        121 AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE---AYGWRAAFFVGLLPVLLVIYIRARAPESKE  197 (426)
T ss_pred             hhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc---cCCHHHHHHHHHHHHHHHHHHHHHCCCChH
Confidence            99999999999999999999999999999999999999888665543   357999998865444333322223455543


Q ss_pred             hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      +..++.+             .+++.         .....+..+.++++.++++..+...... ...+........+..++
T Consensus       198 ~~~~~~~-------------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  254 (426)
T PRK12307        198 WEEAKLS-------------GKGKH---------SQSAWSVFSLSMKGLFNRAQFPLTLCVF-IVLFSIFGANWPIFGLL  254 (426)
T ss_pred             HHHhhhh-------------ccccc---------cccchhhhhHHHHHHHhhchHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            2211000             00000         0000000112344555544333322222 22222233334466788


Q ss_pred             HHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          259 PLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       259 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      |.++++.|.++.+.+.......++.+++.++.++  +.||++||+.+..+
T Consensus       255 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~--l~dr~~~~~~~~~~  302 (426)
T PRK12307        255 PTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGL--CADRIGLKKTFSIG  302 (426)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccHHHHHHH
Confidence            9999888999999999999999999999999999  99999999887654

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.96  E-value=1.9e-28  Score=209.03  Aligned_cols=239  Identities=15%  Similarity=0.062  Sum_probs=175.2

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+++|+|+|+++.+++.+.+.+++.+++++.|+++||+|||+++..+......+......+++++.++++|+++|++.
T Consensus        14 lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~   93 (368)
T TIGR00903        14 LSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQ   93 (368)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHh
Confidence            37788999999999999999999999999999999999999998876555544444333333378999999999999998


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHH-hhcccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG-ALFLPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~~es~  177 (310)
                      +. .......++|++|+++|++++++.+.+..+|.++++.++..+.+   +++||+.|++.++++++..+. .+++||+|
T Consensus        94 ~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~---~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903        94 PF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYT---AGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            86 45556667999999999999999999999999999999887764   368999999977777665544 45589987


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      ++..+  + .+.                  ++.          ..++++.+++    +.++...+.+++....++.+..|
T Consensus       170 ~~~~~--~-~~~------------------~~~----------~~~~~~ll~~----~~~~~~~~~~~~~~~~~~~~~~w  214 (368)
T TIGR00903       170 FQAAE--G-FGF------------------KDA----------VKEFGALAGR----KDLWIIGAILGFGVALFDNLAIW  214 (368)
T ss_pred             CCCCC--C-cch------------------HHH----------HHHHHHHHcC----hhHHHHHHHHHHHHHHHHHHHHH
Confidence            64211  0 000                  000          0123444444    33455555566666677888999


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccc
Q 021634          258 APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  302 (310)
Q Consensus       258 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r  302 (310)
                      +|.++++.|++.. .+....+..+.+.++   .++  +.||..||
T Consensus       215 lp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~--~~d~~~r~  253 (368)
T TIGR00903       215 LEAALRPAGLEDI-AGDAVALAILAGLIG---VAV--IPDRVARA  253 (368)
T ss_pred             HHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHH--hhHHhhhh
Confidence            9999988888764 555555555555544   456  67776543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.96  E-value=3e-28  Score=210.64  Aligned_cols=244  Identities=14%  Similarity=0.094  Sum_probs=191.4

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+++|+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+.++++++++.++++|+++|++.
T Consensus        32 lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~  111 (393)
T PRK09705         32 LPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGI  111 (393)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHH
Confidence            37889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhccc-CCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP-ETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~-es~  177 (310)
                      +...+....++.|++| ++|+++++.+..+..+|..+++.++..+.+..  .+||+.+.+.++..++..+..+... +.|
T Consensus       112 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (393)
T PRK09705        112 GIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS--ETWYQTLAWWALPAVVALFAWWWQSAREV  188 (393)
T ss_pred             HHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999997 78999999999999899888888877665432  2699988776665544433333221 111


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      +     ++   +                          ++   +...++.+++    +..+...+.++.....+.....+
T Consensus       189 ~-----~~---~--------------------------~~---~~~~~~~l~~----~~~~~l~~~~~~~~~~~~~~~~~  227 (393)
T PRK09705        189 A-----SS---H--------------------------KT---TTTPVRVVFT----PRAWTLGVYFGLINGGYASLIAW  227 (393)
T ss_pred             c-----cc---c--------------------------CC---CcCCcccccC----HhHHHHHHHHHHHHHHHHHHHHH
Confidence            1     00   0                          00   0000111111    22222333333344456678889


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          258 APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       258 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .|.++++.|.+..+++....+..++.++|.+..++  +.||++||+..+.+
T Consensus       228 lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~--l~~r~~~~~~~~~~  276 (393)
T PRK09705        228 LPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPA--MARHQDRRKLLMLA  276 (393)
T ss_pred             HHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHH--HHhhccchHHHHHH
Confidence            99999889999999999999999999999999999  99999999887654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.96  E-value=5.2e-29  Score=220.11  Aligned_cols=270  Identities=12%  Similarity=0.025  Sum_probs=196.6

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHH
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-----AVNVYMLIFGRLL   93 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l   93 (310)
                      .|.+.+|+|+++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+..++     +++++.+++.|++
T Consensus        52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l  131 (467)
T PRK09556         52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWAL  131 (467)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999998888888777766554     5899999999999


Q ss_pred             HhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh-c
Q 021634           94 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL-F  172 (310)
Q Consensus        94 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~  172 (310)
                      +|++.+...+....+++|++|+++|+++++++..+.++|..+++.++..+.......+||..|.+.+++.++..+..+ +
T Consensus       132 ~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~  211 (467)
T PRK09556        132 SGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY  211 (467)
T ss_pred             HHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999988875544321112599988887777776655444 4


Q ss_pred             ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhcc-ccchhHHHHHHHHHHHHHhhhH
Q 021634          173 LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQ-RKYRPQLLMAMAIPFFQQVTGI  251 (310)
Q Consensus       173 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  251 (310)
                      .+|+|+..... + .++   .   ..+..+.     +. +.  .+ +.+.+..+.++ ...+++.++...+..++....+
T Consensus       212 ~~~~p~~~~~~-~-~~~---~---~~~~~~~-----~~-~~--~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  274 (467)
T PRK09556        212 GSDSPEELGWG-K-AEE---I---FGEPISE-----ED-KE--TE-STDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVR  274 (467)
T ss_pred             CCCChhhcCCC-C-hhh---c---ccCccch-----hh-hc--cc-cccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence            56665321110 0 111   0   0000000     00 00  00 00011111111 1223344555555555555556


Q ss_pred             HHHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          252 NVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       252 ~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      .....|.|.|+++ .|++..+++.......++..++.+++++  ++||++||+.++.
T Consensus       275 ~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~--lsDr~g~r~~~~~  329 (467)
T PRK09556        275 IGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGW--LSDLANGRRALVA  329 (467)
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCchHHH
Confidence            6788899999965 6999999999999999999999999999  9999999886553

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.96  E-value=1.1e-27  Score=208.44  Aligned_cols=253  Identities=19%  Similarity=0.205  Sum_probs=197.2

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+.+|+|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.
T Consensus        38 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~  117 (406)
T PRK11551         38 APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGL  117 (406)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHH-hhcccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG-ALFLPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~~es~  177 (310)
                      +...+....++.|++|+++|++++++.+.+..+|..+++.++..+.+   ..+||+.|++.+++.++..+. ..++||+|
T Consensus       118 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        118 GGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG---DAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---ccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            99899999999999999999999999999999999999998765543   357999999877665555443 34578877


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      ++..++++ .++.+                              ...+..++....++ .......++......+....+
T Consensus       195 ~~~~~~~~-~~~~~------------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  242 (406)
T PRK11551        195 AFAQAAGA-GKQRA------------------------------PVLRALFGEGRATA-TLLLWISYFFTLIVLYFLLNW  242 (406)
T ss_pred             hHHhccCc-chhhh------------------------------hhHHHHhhhhhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence            54322111 00000                              00011111111111 111222233333345566778


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          258 APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       258 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .|.++++.|+++.+.+.......++.+++.++.++  +.||+|||+.+..+
T Consensus       243 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~--l~dr~g~~~~~~~~  291 (406)
T PRK11551        243 LPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGA--LMDRLRPRRVVLLI  291 (406)
T ss_pred             HHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHH
Confidence            89999889999999999999999999999999999  99999999887643

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=5.2e-28  Score=209.53  Aligned_cols=256  Identities=16%  Similarity=0.186  Sum_probs=213.4

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHhhcccc
Q 021634           23 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV--NVYMLIFGRLLLGVGVGF  100 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~  100 (310)
                      +.+++.|+++.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++...+.  +++.+++.|+++|++.|.
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~  144 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGV  144 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhH
Confidence            668999999999999999999999999999999999999999999999999999988874  456778999999999999


Q ss_pred             cccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCCchh
Q 021634          101 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPETPNS  179 (310)
Q Consensus       101 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es~~~  179 (310)
                      .++....+.+.|.|++||++..++...+..+|.+++.++++.+.+.  ..||+++|++.++.+++..+++++ ..|+|..
T Consensus       145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s--~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES--SLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc--CCCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            9999999999999999999999999999999999999998888865  358999999999999998877755 6777754


Q ss_pred             hHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 021634          180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP  259 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (310)
                      +.  .-+.+|.+..              ++.+.+...+++.+.||++++++    +.++...+..+....+++.+..|.|
T Consensus       223 h~--~is~~El~~I--------------~~~k~~~~~~~~~~vP~~~i~ts----~~vwai~~~~f~~~~~~~~l~~y~P  282 (466)
T KOG2532|consen  223 HP--NISEKELKYI--------------EKGKSEAHVKKKPPVPYKAILTS----PPVWAIWISAFGGNWGFYLLLTYLP  282 (466)
T ss_pred             CC--CCCHHHHHHH--------------HhcccccccCCCCCCCHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            21  1112221111              11111111111145677777765    6677788888888889999999999


Q ss_pred             HHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccc
Q 021634          260 LLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  302 (310)
Q Consensus       260 ~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r  302 (310)
                      .|+++. |++..+.|++.++..+...+..++++.  ++||+.+|
T Consensus       283 tY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~--lsD~l~~~  324 (466)
T KOG2532|consen  283 TYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQ--LSDRLTFR  324 (466)
T ss_pred             HHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHH--HHHHHhhc
Confidence            999876 999999999999999999999999999  99998775

>PRK09952 shikimate transporter; Provisional

Probab=99.96  E-value=1.5e-27  Score=208.91  Aligned_cols=247  Identities=16%  Similarity=0.203  Sum_probs=175.8

Q ss_pred             ccchhHHHHHH-----HHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHH
Q 021634           27 KFDSQLLTSFT-----SSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVY--------MLIFGRLL   93 (310)
Q Consensus        27 ~~~~~~~~~~~-----~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l   93 (310)
                      +.++. .+++.     ++.+++..+++++.|+++||+|||+++..+.++++++++++++++++.        .++++|++
T Consensus        56 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l  134 (438)
T PRK09952         56 QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAI  134 (438)
T ss_pred             CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence            45555 34443     345667789999999999999999999999999999999999999987        58889999


Q ss_pred             HhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC-----CCchhHHHHHhhHHHHHHHHH
Q 021634           94 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK-----GGWGWRVSLALAAVPASILTL  168 (310)
Q Consensus        94 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~wr~~~~~~~~~~~~~~~  168 (310)
                      +|++.|..++....++.|++|+++|++..+..+.+..+|.+++..+...+....     ..++||+.|++.+++.++...
T Consensus       135 ~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~  214 (438)
T PRK09952        135 QGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALW  214 (438)
T ss_pred             HHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988877655443321     246899999998877665544


Q ss_pred             HhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhh-hhccccchhHHHHHHHHHHHHH
Q 021634          169 GALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFK-KIIQRKYRPQLLMAMAIPFFQQ  247 (310)
Q Consensus       169 ~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  247 (310)
                      .....||+|++...+++ .++                           + +.+.+.. ...+++   +.+.......+..
T Consensus       215 l~~~~~es~~~~~~~~~-~~~---------------------------~-~~~~~~~~~l~~~~---~~~~~~~~~~~~~  262 (438)
T PRK09952        215 VRNGMEESAEFEQQQHE-QAA---------------------------A-KKRIPVIEALLRHP---GAFLKIIALRLCE  262 (438)
T ss_pred             HHHhCCCChhHHHHHhh-ccc---------------------------c-cccCCHHHHHHHch---HHHHHHHHHHHHH
Confidence            44457887754322111 000                           0 0001111 122221   1222222223333


Q ss_pred             hhhHHHHHHhHHHHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          248 VTGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       248 ~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      ....+....|.|.+++ +.|++...........++...++.++.++  ++||+|||+.++.+
T Consensus       263 ~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~--l~Dr~grr~~~~~~  322 (438)
T PRK09952        263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAW--LADRFGRRRVYITG  322 (438)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCchHHHHHH
Confidence            4455667778888885 45888776655666667777888889999  99999999987754

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.96  E-value=5.3e-28  Score=214.90  Aligned_cols=281  Identities=10%  Similarity=0.031  Sum_probs=201.5

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+.+|+|.+.++.+|+.+.+.++..++.+++|+++||+|||++++.+.++..++++++++++|++.++++|+++|++.
T Consensus        29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~  108 (495)
T PRK14995         29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGA  108 (495)
T ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcc-cccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCC
Q 021634           99 GFANQSVPLYLSEMA-PARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPET  176 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es  176 (310)
                      +...+.....+.+.+ |+++|+++++++.....+|..++|.+++.+.+.   .+||+.|++...+.++..+.. +++||+
T Consensus       109 ~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~---~gwr~~f~i~~~~~~~~~~l~~~~l~~~  185 (495)
T PRK14995        109 AMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH---FYWGSVFLINVPIVLVVMGLTARYVPRQ  185 (495)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            888887777776765 678999999999999999999999999888754   579999999777666655443 457776


Q ss_pred             chhhHhccCcHHHHHH----------HHHHhcCCc-chHHHHH-------HHHHhhhccccccchh--hhhccccchhHH
Q 021634          177 PNSLIQRKSDHQKAKL----------MLQRVRGTN-DVEAEFD-------DLLKASSTAKTINHPF--KKIIQRKYRPQL  236 (310)
Q Consensus       177 ~~~~~~~~~~~~~~~~----------~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  236 (310)
                      ++... ++.+..+...          ..+...... +......       ....-...+.+.+.+.  .+.++++    .
T Consensus       186 ~~~~~-~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~----~  260 (495)
T PRK14995        186 AGRRD-QPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHR----I  260 (495)
T ss_pred             CCCCC-CCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCc----c
Confidence            53211 1111111100          000000000 0000000       0000000011111111  2333332    2


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          237 LMAMAIPFFQQVTGINVIAFYAPLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      +....+..+...........+.|.++++. |+++.+++....+..++..++.++.++  +.||+|+|+.+..++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~--l~~r~g~~~~~~~g~  332 (495)
T PRK14995        261 ILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGI--LVSRLGLRLVATGGM  332 (495)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCchHHHHHHH
Confidence            33333333334444556677889999764 999999999999999999999999999  999999998876553

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.96  E-value=1.5e-27  Score=208.95  Aligned_cols=258  Identities=14%  Similarity=0.135  Sum_probs=195.2

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+.+++|+|+++.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.++.+++++++.+.+.|++.|++.
T Consensus        46 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~  125 (434)
T PRK11663         46 MPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQ  125 (434)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            36788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHH-HhhcccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL-GALFLPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~-~~~~~~es~  177 (310)
                      |...+....++.|++|+++|++++++.+.+..+|..+++.+.+.+.+   .++||+.|++.+++.++..+ ..+++||+|
T Consensus       126 g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~---~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p  202 (434)
T PRK11663        126 GWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL---HYGWRYGMMIAGIIAIVVGLFLCWRLRDKP  202 (434)
T ss_pred             HccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            98889999999999999999999999999999999999998776654   35799999988877665543 345578876


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhcc-ccchhHHHHHHHHHHHHHhhhHHHHHH
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQ-RKYRPQLLMAMAIPFFQQVTGINVIAF  256 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (310)
                      ++...+.. .+..++          ..    +..++   .++.+.++++.++ ...+++.++...+..+........+..
T Consensus       203 ~~~~~~~~-~~~~~~----------~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (434)
T PRK11663        203 QAMGLPSV-GEWRHD----------AL----ELAQQ---QEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAIND  264 (434)
T ss_pred             hhcCCCCc-cccccc----------cc----ccchh---ccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            53211110 000000          00    00000   0000112222221 112223344444444444445566778


Q ss_pred             hHHHHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Q 021634          257 YAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRV  299 (310)
Q Consensus       257 ~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~  299 (310)
                      |.|.+++ +.|++..+++...+...+++.++.++.++  +.||+
T Consensus       265 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~--l~dr~  306 (434)
T PRK11663        265 WGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGW--GSDKL  306 (434)
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhh--hHHHh
Confidence            9999994 56999999999999999999999999999  99998

>PRK15075 citrate-proton symporter; Provisional

Probab=99.96  E-value=2.4e-27  Score=207.73  Aligned_cols=253  Identities=17%  Similarity=0.247  Sum_probs=178.5

Q ss_pred             ccccccccccchhHHHHHH-HHH-----HHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHH------
Q 021634           19 DTKISNYCKFDSQLLTSFT-SSL-----YVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYM------   86 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~------   86 (310)
                      .|.+.+|++.++.+.+.+. +..     .++..+++++.|+++||+|||+.++.+.++..+++++++++++++.      
T Consensus        38 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~  117 (434)
T PRK15075         38 ATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAP  117 (434)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            3788999998887765443 222     2233578999999999999999999999999999999999998774      


Q ss_pred             --HHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc-----CCCchhHHHHHhh
Q 021634           87 --LIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI-----KGGWGWRVSLALA  159 (310)
Q Consensus        87 --l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~wr~~~~~~  159 (310)
                        ++++|+++|++.+...+....+++|++|+++|++++++...+..+|..+++.++..+...     .+.++||+.|++.
T Consensus       118 ~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~  197 (434)
T PRK15075        118 LLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIG  197 (434)
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHH
Confidence              688999999999999998899999999999999999999988888887777776655322     1346899999875


Q ss_pred             HHHHHHHHHHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHH
Q 021634          160 AVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMA  239 (310)
Q Consensus       160 ~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (310)
                      .+...+........||++++..+++                                +.+.+..+++..++   ++....
T Consensus       198 ~~~~~~~~~~~~~~~e~~~~~~~~~--------------------------------~~~~~~~~~~~~~~---~~~~~~  242 (434)
T PRK15075        198 CLIVPFIFLIRRSLEETEEFLARKH--------------------------------RPSMREIFRSLAAN---WRIVLA  242 (434)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHhhh--------------------------------ccccccHHHHHHHh---HHHHHH
Confidence            5433222222122333221100000                                00000011111111   122222


Q ss_pred             HHHHHHHHhhhHHHHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          240 MAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .....+.....++....|.|.|+++ .|++..+++....+..++++++.++.++  +.||+|||+.++.+
T Consensus       243 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~Dr~g~r~~~~~~  310 (434)
T PRK15075        243 GMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGA--LSDRIGRRPVLIAF  310 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHH
Confidence            2233333445567788899999976 5999999998888889999999999999  99999999987653

>PRK03545 putative arabinose transporter; Provisional

Probab=99.96  E-value=1.2e-27  Score=206.83  Aligned_cols=242  Identities=17%  Similarity=0.089  Sum_probs=189.7

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+.+|+|+|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++++.++++++++.++++|+++|++.
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~  111 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAH  111 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  177 (310)
                      +...+....++.|++|+++|++++++...+..+|..++++++..+.+.   .+||+.|++.+++.++..+.. .++||.|
T Consensus       112 ~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        112 AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY---LGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            888888899999999999999999999999999999999998876543   579999999888776665443 3356643


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      +.    ++  ++                               ..+.++.++++..+....   .. +...........+
T Consensus       189 ~~----~~--~~-------------------------------~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~  227 (390)
T PRK03545        189 SE----HS--GS-------------------------------LKSLPLLFRRPALVSLYL---LT-VVVVTAHFTAYSY  227 (390)
T ss_pred             CC----Cc--ch-------------------------------HHHHHHHHhCcHHHHHHH---HH-HHHHHHHHHHHHH
Confidence            21    00  00                               001123333322222222   11 1112222333456


Q ss_pred             HHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhh
Q 021634          258 APLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  306 (310)
Q Consensus       258 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~  306 (310)
                      .+.++++ .|.++.+++.......++++++.++.++  +.||++||++.+
T Consensus       228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~--l~dr~~~~~~~~  275 (390)
T PRK03545        228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSR--LGNRHPSGFLLI  275 (390)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHH--HhhccchhHHHH
Confidence            6666655 5899999999999999999999999999  999999887644

>TIGR00895 2A0115 benzoate transport

Probab=99.96  E-value=3.1e-27  Score=204.70  Aligned_cols=279  Identities=22%  Similarity=0.297  Sum_probs=203.5

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+.+++|.++.+.+++.+...++..+++++.|+++||+|||+.+..+.++..++.++..++++++.+++.|++.|++.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  119 (398)
T TIGR00895        40 APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGL  119 (398)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhccc
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHH-HHhhcccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT-LGALFLPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~-~~~~~~~es~  177 (310)
                      +...+....++.|++|+++|++++++...+..+|..+++.+++.+.+.   .+|++.+++.++..++.. +...++||++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       120 GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV---FGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc---ccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999998766543   579999988765554443 4445688887


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      ++..++ + .++..+..++.......+.+ ++..++..+++..+...+..++.+..+. .....+..+...........+
T Consensus       197 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  272 (398)
T TIGR00895       197 DFLVSK-R-PETVRRIVNAIAPQMQAEAQ-SALPEQKATQGTKRSVFKALFQGKTARI-TVLLWLLYFMLLVGVYFLTNW  272 (398)
T ss_pred             hHHHhc-C-HHHHHHHHHHHHHhcccccc-ccccccccccchhhHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            654433 2 22222222221111100000 0000000000011111222332222222 222333333444556667788


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhh
Q 021634          258 APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  306 (310)
Q Consensus       258 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~  306 (310)
                      .|.+.++.|.++.+.+.......++.+++.++.++  +.||+++|+...
T Consensus       273 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~  319 (398)
T TIGR00895       273 LPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW--LADRLGPRVTAL  319 (398)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcchHHHHH
Confidence            89777888999999999999999999999999999  999999985543

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.96  E-value=9.5e-28  Score=207.60  Aligned_cols=264  Identities=14%  Similarity=0.149  Sum_probs=200.4

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+++++|.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++..+++++++++.++++|++.|++.
T Consensus        17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~   96 (399)
T TIGR00893        17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAE   96 (399)
T ss_pred             HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            36688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh-cccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL-FLPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~es~  177 (310)
                      +...+....++.|++|+++|++++++.+....+|.++++.+++.+.+.   .+||+.|++.+++.++..+..+ +.||+|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (399)
T TIGR00893        97 APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH---FSWQWAFIIEGVLGIIWGVLWLKFIPDPP  173 (399)
T ss_pred             HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh---CCchHHHHHHHHHHHHHHHHhhheecCCC
Confidence            999999999999999999999999999999999999999998866543   4699999998887776655544 466655


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      +.... .. +++..+..++...         +. ++.++++..+...++.+++    +.++...+..+...........+
T Consensus       174 ~~~~~-~~-~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  237 (399)
T TIGR00893       174 QKAKW-LT-EEEKYIVVGGLLA---------EQ-QGKGPSTPKKYQIKELLKD----RRVWGLALGQFLVNIGLGFFLTW  237 (399)
T ss_pred             Ccccc-CC-HHHHhhcchhhcc---------cc-ccccccCCCccchHHHhcC----HHHHHHHHHHHHHHhHHHHHHHH
Confidence            32111 01 1111100000000         00 0001111112223333332    33444444445555566777888


Q ss_pred             HHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccch
Q 021634          258 APLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRK  303 (310)
Q Consensus       258 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~  303 (310)
                      .|.++++ .|.++.+.+.......++.+++.+..++  +.||++||+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~  282 (399)
T TIGR00893       238 FPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGR--LSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHH--HHHHHhhcc
Confidence            9988865 5899999999999999999999999999  999999996

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.96  E-value=4e-27  Score=208.26  Aligned_cols=256  Identities=13%  Similarity=0.073  Sum_probs=196.9

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHhhccccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA--VNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~  101 (310)
                      +|++++..+.+++.+.+.+++.+++++.|+++||+|||+++..+.+++.++++++.++  .+++.+++.|+++|++.+..
T Consensus        69 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~  148 (465)
T TIGR00894        69 PNFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSV  148 (465)
T ss_pred             CCCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccc
Confidence            3899999999999999999999999999999999999999999999999998887554  55788999999999999999


Q ss_pred             ccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCCchhh
Q 021634          102 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPETPNSL  180 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es~~~~  180 (310)
                      .+....++.|++|+++|++++++...+..+|..++++++..+.+..  .+||+.|++.+++.++..+.+++ .+|+|+..
T Consensus       149 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~--~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~  226 (465)
T TIGR00894       149 SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW--GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH  226 (465)
T ss_pred             hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCeehhhhhHHHHHHHHHHHHHhcCCcccC
Confidence            9999999999999999999999999999999999999987766431  27999999988888777665554 56666422


Q ss_pred             HhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHHH
Q 021634          181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPL  260 (310)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (310)
                      .. .. +++. +..++             ..++..++.+.+.++++.++    ++.++...+..+......+.+..|+|.
T Consensus       227 ~~-~~-~~~~-~~i~~-------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~lp~  286 (465)
T TIGR00894       227 PC-IS-KFEK-KYINS-------------SLQGQKGSTRQSLPIKAIPK----SLPVWAIWFAIFGHFWLYTILPTYLPT  286 (465)
T ss_pred             CC-CC-HHHH-HHHHh-------------hcccccCCCCCCCCHHHHhc----CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 11 1111 10000             00000001111223444443    344555566666666677788899999


Q ss_pred             HHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccch
Q 021634          261 LFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRK  303 (310)
Q Consensus       261 ~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~  303 (310)
                      |+++ .|++..+++....+..++..++.+++++  ++||+++|+
T Consensus       287 ~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~--l~d~~~~~~  328 (465)
T TIGR00894       287 FISWVLRVSGKENGLLSSLPYLFAWLCSIFAGY--LADFLKSSK  328 (465)
T ss_pred             HHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHcC
Confidence            9965 5999999999999999999999999999  999987553

>PRK03699 putative transporter; Provisional

Probab=99.95  E-value=2e-26  Score=199.52  Aligned_cols=245  Identities=12%  Similarity=0.094  Sum_probs=190.5

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |++.+++|+|+++.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.+
T Consensus        31 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g  110 (394)
T PRK03699         31 GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSG  110 (394)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhH
Confidence            66889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS  179 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~  179 (310)
                      ...+....++.|++|+++|+++.+..+....+|..++|.+...+..  ...+||+.|.+.+++.++..+..++ .+.|+.
T Consensus       111 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~  187 (394)
T PRK03699        111 ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLA--RSIEWYWVYACIGLVYVAIFILTLF-SEFPAL  187 (394)
T ss_pred             hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHHh-cCCccc
Confidence            8888889999999999999999999888888888888888665432  2257999999888777665544433 222210


Q ss_pred             hHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 021634          180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP  259 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (310)
                        ++++ .+                          ++++.        .+... ++.++...+..+........+..|.|
T Consensus       188 --~~~~-~~--------------------------~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p  229 (394)
T PRK03699        188 --GKHA-PK--------------------------ADKPV--------AKEKW-GIGVLFLAIAALLYILAQLTFISWVP  229 (394)
T ss_pred             --cccC-cc--------------------------ccCcc--------ccccC-ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              0000 00                          00000        00111 12233333344444445567788999


Q ss_pred             HHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          260 LLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       260 ~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      .|+++ .|+++.+++...+...++..+|.+..++  +.||+++|+.+..
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~--l~dr~~~~~~l~~  276 (394)
T PRK03699        230 EYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSF--IVRFFDLQRILTV  276 (394)
T ss_pred             HHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHH--HHHHhchhhHHHH
Confidence            99954 5999999999999999999999999999  9999999988764

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.95  E-value=5.3e-27  Score=201.76  Aligned_cols=250  Identities=13%  Similarity=0.079  Sum_probs=187.3

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+.+++|+|+++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.++++++++.++++|++.|++.
T Consensus        26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  105 (377)
T TIGR00890        26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGV  105 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            37788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es~  177 (310)
                      +..++.....+.|++| ++|+++.+....+.++|..+++++...+..   ..+||+.|++.+++.++..+..++ ++|+|
T Consensus       106 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (377)
T TIGR00890       106 GIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVIN---LEGVPAAFIYMGIIFLLVIVLGAFLIGYPP  181 (377)
T ss_pred             HHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence            8888888888899886 679999999999999998776555443332   357999999988888776655544 55443


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      +...++++   +             .              +..+.+.++.++++....    ..+..+...........+
T Consensus       182 ~~~~~~~~---~-------------~--------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  227 (377)
T TIGR00890       182 GQLIKTNI---E-------------V--------------SVKDYTVWEMLRTPQFWV----LYLSFFLNAVSGLLLIGL  227 (377)
T ss_pred             hhccccCc---c-------------c--------------chhhhhHHHHHcCccHHH----HHHHHHHHhHHHHHHHHH
Confidence            21100000   0             0              000011223333322222    222222222223334455


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          258 APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       258 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .+.+.++.|.++.+.+.......++..++.+..++  +.||++||+.+..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--l~dr~g~~~~~~~~  276 (377)
T TIGR00890       228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGA--LSDKIGRQKTMSIV  276 (377)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhhhHH
Confidence            66677888888888999999999999999999999  99999999887654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.95  E-value=3e-27  Score=203.44  Aligned_cols=258  Identities=14%  Similarity=0.167  Sum_probs=191.3

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.+++|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++.+++++++.+++.|++.|++.+
T Consensus        19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   98 (379)
T TIGR00881        19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQG   98 (379)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHH-HHHhhhcccCCCchhHHHHHhhHHHHHHHHHH-hhcccCCc
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAAN-FINYGTEQIKGGWGWRVSLALAAVPASILTLG-ALFLPETP  177 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~~es~  177 (310)
                      ...+....++.|++|+++|+++.++.+.+..+|..+++ .++..+..   ..+||+.|++.+++.++..+. .++.||+|
T Consensus        99 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (379)
T TIGR00881        99 MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE---LYSWHWVFIVPGIIAIIVSLICFLLLRDSP  175 (379)
T ss_pred             ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHHHHheeeCCCc
Confidence            99999999999999999999999999999999999998 45554443   347999998887777665444 44567765


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhcc-ccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHH
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTA-KTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAF  256 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (310)
                      +....++.+.++.          ++.+.+    +++.+++ +..+...++.+++    +.++...+..+........+..
T Consensus       176 ~~~~~~~~~~~~~----------~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  237 (379)
T TIGR00881       176 QSCGLPPAEEMPN----------EEPDGD----AEKKEEELTKKQIFLQYVLLN----KVLWYISLGYVFVYVVRTGILD  237 (379)
T ss_pred             cccccCccccCcc----------cccccc----cccccccccchHHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHH
Confidence            4321111100000          000000    0000000 0011112223322    3333344444444445566778


Q ss_pred             hHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhc
Q 021634          257 YAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVR  300 (310)
Q Consensus       257 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g  300 (310)
                      +.|.++++ .|+++.+++.......++.+++.++.++  +.||..
T Consensus       238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~r~~  280 (379)
T TIGR00881       238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGW--LSDKLF  280 (379)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHH--HHHHHc
Confidence            88988855 5999999999999999999999999999  999864

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.95  E-value=9.3e-27  Score=200.75  Aligned_cols=243  Identities=15%  Similarity=0.131  Sum_probs=189.0

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+++|+|.+.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.++++++++++.+++.|++.|++.+
T Consensus        27 ~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~  106 (382)
T PRK10091         27 TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHG  106 (382)
T ss_pred             HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCch
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPN  178 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~  178 (310)
                      ...+....++.|++|+++|+++++....+..+|..++++++..+.+.   .+||+.|++.+++.++..+.. +++||.++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~  183 (382)
T PRK10091        107 AFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE---FSWRYTFLLIAVFNIAVLASIYFWVPDIRD  183 (382)
T ss_pred             HHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            88888888899999999999999999999999999999998776643   579999999888776655443 44777532


Q ss_pred             hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      .   ++.  +. +                              ..+ +.++++   + .+......+....+......+.
T Consensus       184 ~---~~~--~~-~------------------------------~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~  222 (382)
T PRK10091        184 E---AKG--GL-R------------------------------EQF-HFLRSP---A-PWLIFAATMFGNAGVFAWFSYI  222 (382)
T ss_pred             c---ccc--CH-H------------------------------HHH-HHhcCh---H-HHHHHHHHHHHHHHHHHHHHHH
Confidence            1   000  00 0                              000 111111   1 1111222222222233334455


Q ss_pred             HHHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          259 PLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       259 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      +.+++ ..|+++.+.+.......++.+++.++.++  +.||+++|+++..+
T Consensus       223 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~--l~~r~~~~~~~~~~  271 (382)
T PRK10091        223 KPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGR--LSGRYSPLRIAAVT  271 (382)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHhe--eccccCchhHHHHH
Confidence            55664 46999999999999999999999999999  99999999877653

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.95  E-value=1.8e-26  Score=199.41  Aligned_cols=239  Identities=17%  Similarity=0.165  Sum_probs=186.4

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+.+|+|.++++.++..+.+.++..+++++.|+++||+|||+++..+.++..++.+++.++++++.+++.|++.|++.
T Consensus        43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~  122 (394)
T PRK10213         43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLAL  122 (394)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhh
Confidence            36688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh-cccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL-FLPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~-~~~es~  177 (310)
                      +...+....++.|++|+++|+++.+....+.++|..++|.++..+.+.   ++||+.|++.+++.++..+... ..||+|
T Consensus       123 g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~---~gw~~~f~~~~~l~~~~~l~~~~~~p~~~  199 (394)
T PRK10213        123 GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL---IGWRNVFNAAAVMGVLCIFWIIKSLPSLP  199 (394)
T ss_pred             HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            999999999999999999999999999999999999999999877653   5799999998776665544433 356643


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      ++.   ++ .                                 ..+.++.+++    +.++...+..+...........+
T Consensus       200 ~~~---~~-~---------------------------------~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~  238 (394)
T PRK10213        200 GEP---SH-Q---------------------------------KQNTFRLLQR----PGVMAGMIAIFMSFAGQFAFFTY  238 (394)
T ss_pred             ccc---cc-c---------------------------------hhHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            210   00 0                                 0011222322    22222222222222233333444


Q ss_pred             -HHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccch
Q 021634          258 -APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRK  303 (310)
Q Consensus       258 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~  303 (310)
                       .|.+.++.|+++.+.+......+++..++.++.++  +.||.+++.
T Consensus       239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~--l~~r~~~~~  283 (394)
T PRK10213        239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSF--ILKRSVKLA  283 (394)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH--HHhccchhH
Confidence             47777778999999999999999999999999999  999955443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.95  E-value=3.8e-27  Score=209.61  Aligned_cols=280  Identities=15%  Similarity=0.105  Sum_probs=201.8

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+.+++|.++++.+++.+.+.++..++.++.|+++||+|||+++..+.++..++.++++++++++.++++|+++|++.
T Consensus        25 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~  104 (485)
T TIGR00711        25 IPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGG  104 (485)
T ss_pred             HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhh
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  177 (310)
                      +...+....++.|++|+++|+++.+++..+..+|..+++.+++.+.+   +++||+.|++.+++.++..+.. +++||++
T Consensus       105 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (485)
T TIGR00711       105 GPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE---NYHWRWIFLINVPIGIIVVVVAFFILPRDK  181 (485)
T ss_pred             hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc---CcCceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence            99999999999999999999999999999999999999999887764   3579999999877776655544 3466644


Q ss_pred             hhhHhccCcHHHHH----------HHHHHhcCCc--chHHHHH----------HHHHhhhccccccchhhhhccccchhH
Q 021634          178 NSLIQRKSDHQKAK----------LMLQRVRGTN--DVEAEFD----------DLLKASSTAKTINHPFKKIIQRKYRPQ  235 (310)
Q Consensus       178 ~~~~~~~~~~~~~~----------~~~~~~~~~~--~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (310)
                      +... ++.+.....          ....+.....  +......          ........++++..+ .+.++++... 
T Consensus       182 ~~~~-~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-  258 (485)
T TIGR00711       182 PAAS-ENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVD-LRLFKYRNFT-  258 (485)
T ss_pred             cccc-CCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccC-HHHHcCCChH-
Confidence            3111 111111000          0000000000  0000000          000000001111111 1233332222 


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          236 LLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                         ...+..+.....++....+.|.++++ .|+++.+++....+..++..++.++.++  +.||++||+.+.++.
T Consensus       259 ---~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~--l~~r~~~~~~~~~g~  328 (485)
T TIGR00711       259 ---IGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGR--MGDKIDPRKLVTIGL  328 (485)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCcHHHHHHHH
Confidence               22233333334455667788999976 4999999999999999999999999999  999999999876553

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.95  E-value=3e-29  Score=208.48  Aligned_cols=251  Identities=15%  Similarity=0.224  Sum_probs=195.0

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +++++.+|+++++.|++.+.+.+.+++++|+.|+++|||.||+++.+|..++.++.+.++++..+|++.++|.+.|+|.+
T Consensus        57 ~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeA  136 (493)
T KOG1330|consen   57 KEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEA  136 (493)
T ss_pred             HHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCCch
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPETPN  178 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es~~  178 (310)
                      ...++.+.+++|.+|.++|++++++++.+.++|..+|.+++..+.....  .|||.|+..+++++++.++.++ .+|.++
T Consensus       137 s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~--~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  137 SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF--WWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc--ceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            9999999999999999999999999999999999999999888777654  4999999999999988777655 566543


Q ss_pred             hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      ...++..             ++             .+..+.....++|+. ...+.+.+....+++.........+..|.
T Consensus       215 ga~~~~~-------------~~-------------~~~~~~~ts~~kDl~-~l~~~~v~v~~sl~~~a~~fv~Gs~sww~  267 (493)
T KOG1330|consen  215 GARDEVD-------------GE-------------NKMVKPFTSVWKDLK-VLAKIKVFVLSSLGIIAAQFVIGSLSWWA  267 (493)
T ss_pred             ccccccc-------------cC-------------CcCCCCccchHHHHH-HHHccCceeeehHHHHHHHHhccccchhh
Confidence            2111100             00             000111112223321 11111233333334333333344556666


Q ss_pred             HHHH----HHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhcc
Q 021634          259 PLLF----RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRW  301 (310)
Q Consensus       259 ~~~~----~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~  301 (310)
                      |.+.    +-.|.+..+..++..+...++.+|.+.++.  ++||+.|
T Consensus       268 p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggi--isd~~~~  312 (493)
T KOG1330|consen  268 PAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGI--ISDKLSR  312 (493)
T ss_pred             hhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHH--HHHHHHH
Confidence            6555    223788889999999999999999999999  9999654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.95  E-value=1.4e-26  Score=199.98  Aligned_cols=249  Identities=13%  Similarity=0.095  Sum_probs=194.7

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      -|.+.+++|.|+++.+++.+.+.++..+++++.|+++||+|||+.+..+.++..++.+...++++++.+.+.|++.|++.
T Consensus        28 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~  107 (385)
T TIGR00710        28 FPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGA  107 (385)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcch
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  177 (310)
                      +...+....++.|++|+++|+++.++.+....+|..+++.+++.+.+.   .+||+.+++.++..++..+.. ++.||++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (385)
T TIGR00710       108 SAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW---LSWHAIFAFLSLAGILLSALIFFILPETL  184 (385)
T ss_pred             hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999998876643   479999998777776655544 4466654


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      +...+ ++ .++                .              ...+++.++++....    ..+..............+
T Consensus       185 ~~~~~-~~-~~~----------------~--------------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  228 (385)
T TIGR00710       185 PYEAR-IQ-IST----------------Y--------------FETFLLLLKSKMFWG----YALIYGASFGGFFAFFSG  228 (385)
T ss_pred             CCccc-CC-HHH----------------H--------------HHHHHHHHcCchhHH----HHHHHHHHHHHHHHHHHc
Confidence            31100 00 000                0              001223333322221    222222223344556667


Q ss_pred             HHHHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          258 APLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       258 ~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .|.+++ +.|.++.+.+.......++.+++.++.++  +.||+++|+.+..+
T Consensus       229 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~~~~~  278 (385)
T TIGR00710       229 APFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGR--FIKKWGAKSLLRMG  278 (385)
T ss_pred             ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCHHHHHHHH
Confidence            788875 66999999999999999999999999999  99999999876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.95  E-value=1.2e-26  Score=205.10  Aligned_cols=251  Identities=10%  Similarity=0.048  Sum_probs=180.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.+|+|+++++.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++.++.+++++++.++++|++.|++.+
T Consensus        60 ~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~  139 (476)
T PLN00028         60 PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLA  139 (476)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc----c--CCCchhHHHHHhhHHHHHHHHHHhhcc
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ----I--KGGWGWRVSLALAAVPASILTLGALFL  173 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----~--~~~~~wr~~~~~~~~~~~~~~~~~~~~  173 (310)
                      .. .....+++|++|+++|++++++......+|..+++.+...+..    .  .+..+||+.|++.+++.++..+..+++
T Consensus       140 ~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~  218 (476)
T PLN00028        140 TF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL  218 (476)
T ss_pred             hh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            64 3455678999999999999999887766676666555433321    1  112489999999888887776666555


Q ss_pred             cCC-chhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHH
Q 021634          174 PET-PNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGIN  252 (310)
Q Consensus       174 ~es-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (310)
                      +++ |+.     . .++.++   +  .+              .++.+....+++.++.    +..+...+.++.......
T Consensus       219 ~~~~p~~-----~-~~~~~~---~--~~--------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  269 (476)
T PLN00028        219 GQDLPDG-----N-YRELKK---S--GT--------------MPKDSFSKVLRYGVTN----YRTWILALTYGYSFGVEL  269 (476)
T ss_pred             cCcCCCC-----c-hhhHHh---c--Cc--------------cccccHHHHHHHHHcC----chhHHHHHHHHHHHHHHH
Confidence            433 321     0 000000   0  00              0000000112222222    222223333333333344


Q ss_pred             HHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccc
Q 021634          253 VIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  302 (310)
Q Consensus       253 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r  302 (310)
                      .+..+.|.++.+ .|+++.+++.+..+..+++.++.+++++  ++||++||
T Consensus       270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~--lsDr~~~r  318 (476)
T PLN00028        270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGY--LSDVAARR  318 (476)
T ss_pred             HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHh
Confidence            566778888754 5999999999999999999999999999  99999876

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.95  E-value=3.6e-26  Score=196.92  Aligned_cols=250  Identities=15%  Similarity=0.150  Sum_probs=193.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.+++|+++++.+++.+++.++..+++++.|+++||+|||+.+..+.++..++.+.+.++++++.+++.|++.|++.+
T Consensus        15 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~   94 (377)
T PRK11102         15 PVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAA   94 (377)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            66778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCch
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPN  178 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~  178 (310)
                      ...+....++.|++|+++|++++++.+....+|..+++.++..+.+.   .+||+.|++.+++.++..+.. +++||+++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (377)
T PRK11102         95 AASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW---FSWHAIFWVLALAAILAAALVFFFIPETLP  171 (377)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            88889999999999999999999999999999999999998777643   469999998777776655443 55777543


Q ss_pred             hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      ...+++.                +.++.              ..++++.++++.    .+...+..+....+.+.+..+.
T Consensus       172 ~~~~~~~----------------~~~~~--------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  217 (377)
T PRK11102        172 KERRQPF----------------HLRTT--------------IRNFASLFRHKR----VLGYMLASGFSFAGMFSFLTAG  217 (377)
T ss_pred             ccccCCC----------------ChHHH--------------HHHHHHHHcChH----HHHHHHHHHHHHHHHHHHHHcC
Confidence            1100000                00000              011223333321    2222222333333445556666


Q ss_pred             HHHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          259 PLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       259 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      |.++. +.|+++.+.+.......++.+++.++.++  +.||+|+|+.+..+
T Consensus       218 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~--l~~r~g~~~~~~~~  266 (377)
T PRK11102        218 PFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSR--FVRRVGALNMLRFG  266 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCHHHHHHHH
Confidence            76664 46999999999999999999999999999  99999999877654

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.95  E-value=9.2e-27  Score=198.52  Aligned_cols=253  Identities=21%  Similarity=0.309  Sum_probs=190.7

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccc
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF  100 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  100 (310)
                      .+.+++|.|+.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++..++++++.+++.|++.|++.+.
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  101 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGF  101 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhcccccccccc
Confidence            78899999999999999999999999999999999999999999999999999966666768888999999999999999


Q ss_pred             cccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCchh
Q 021634          101 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNS  179 (310)
Q Consensus       101 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~  179 (310)
                      ..+....++.|++|+++|+++++..+.+..+|..+++.+++.+.+   ..+||+.|++.++..++..++. ++++++++.
T Consensus       102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~---~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~  178 (352)
T PF07690_consen  102 FSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS---YFGWRWAFLISAILSLIAAILFILFLPEPPPP  178 (352)
T ss_dssp             HHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HCHHCCHHHHHHHHHHHHHHHHHCCC---STT
T ss_pred             ccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh---ccccccccccccchhhhhhhhHhhhhhhcccc
Confidence            999999999999999999999999999999999999999887763   3579999999988888876643 445554432


Q ss_pred             hHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccc-hhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINH-PFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      ...+++++++                         +++++... .++...+++..+    ......+...........+.
T Consensus       179 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  229 (352)
T PF07690_consen  179 RERESPKESE-------------------------SKKPKPLKPGFKSLFKNPVLW----ILLIAFFLFFFVFSGFSFFL  229 (352)
T ss_dssp             TT--SSTTTT---------------------------HHHCCCH-CTHHHHHHCCH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccc-------------------------cccccccccccccccccchhh----hhhhhhhHHHHHHHHhhccc
Confidence            2221110000                         00000011 133333332221    22222233333455678889


Q ss_pred             HHHH-HHcCCC-chhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          259 PLLF-RTIGLG-RLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       259 ~~~~-~~~g~~-~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      |.++ +..|++ ..+.+....+..+.+.++.++.++  +.||+++|+....
T Consensus       230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~  278 (352)
T PF07690_consen  230 PLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGR--LSDRFGRRRRLLI  278 (352)
T ss_dssp             HHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCHHHHHH
T ss_pred             chhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCcHHHHHH
Confidence            9985 666888 789999999999999999999999  9999998665543

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1e-26  Score=201.89  Aligned_cols=269  Identities=19%  Similarity=0.252  Sum_probs=210.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      ..+.+|.++..++.+.+.++++++++++.++++.+.||++..+.+....+++++..++....+|++.+++.|++.|+.++
T Consensus        70 ~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es  149 (495)
T KOG2533|consen   70 SGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFES  149 (495)
T ss_pred             cCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            34678999999999999999999999999999999999999999999999999988888889999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC---CCchhHHHHHhhHHHHHHHHHHh-hcccC
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK---GGWGWRVSLALAAVPASILTLGA-LFLPE  175 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~wr~~~~~~~~~~~~~~~~~-~~~~e  175 (310)
                      +.+|....+++.|+.+++|+..++++.+..++|.+++++++..+.+..   ...||||.|++.++++++..+.. +++|+
T Consensus       150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence            999999999999999999999999999999999999999988754321   23589999999999888877665 55999


Q ss_pred             CchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHH
Q 021634          176 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIA  255 (310)
Q Consensus       176 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (310)
                      .|....-.+  .+|.+-..++.             ++........+.++++. ++..+.+.++...+..++.....+++.
T Consensus       230 ~P~~~~fl~--~~ek~~~~~~~-------------~~~~~~~~~~~~~~~~~-~~a~~dp~vw~~~l~~~~~~lv~~~~~  293 (495)
T KOG2533|consen  230 NPSKAWFLT--DEEKELVVERL-------------RESPSGGIENKFKWKGF-KEALKDPGVWPFSLCYFFLKLVNYGFS  293 (495)
T ss_pred             Chhhccccc--hHHHHHHHHHH-------------HhccCCCcccccCHHHH-HHHHhchhHHHHHHHHHHHhhccccHH
Confidence            886321111  11111111111             10101110011122222 233344556667777777777788899


Q ss_pred             HhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHH----hccchhhh
Q 021634          256 FYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNR----VRWRKLDI  306 (310)
Q Consensus       256 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~----~g~r~~~~  306 (310)
                      +|+|.++++ .|++..++..+..+..++++++.++.++  ++||    ..+|....
T Consensus       294 ~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~--lsdr~~~~~~~~~~~~  347 (495)
T KOG2533|consen  294 YWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGY--LSDRLKTIFARRLLFI  347 (495)
T ss_pred             HHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHH--HHHHHhhhHHHHHHHH
Confidence            999999988 4799999999999999999999999999  9999    55555443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.95  E-value=1.5e-26  Score=198.48  Aligned_cols=259  Identities=14%  Similarity=0.120  Sum_probs=182.7

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHhhccc
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV-NVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~   99 (310)
                      .+++++|+|+.+.+++.+++.+++.+++++.|+++||+|||+.+..+.++..++.+++++++ +++.+++.|++.|++.+
T Consensus        27 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~  106 (366)
T TIGR00886        27 MIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG  106 (366)
T ss_pred             HHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhch
Confidence            38899999999999999999999999999999999999999999999999999999999999 99999999999999855


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc-------CCCchhHHHH-HhhHHHHHHHH-HHh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI-------KGGWGWRVSL-ALAAVPASILT-LGA  170 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------~~~~~wr~~~-~~~~~~~~~~~-~~~  170 (310)
                       ..+....+++|++|+++|+++.++......+|..+++.++..+...       ....+||+.+ +..++...+.. +..
T Consensus       107 -~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  185 (366)
T TIGR00886       107 -SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIF  185 (366)
T ss_pred             -hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHH
Confidence             4566788999999999999999998877777776666665443321       1234799998 44344444333 333


Q ss_pred             hcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhh
Q 021634          171 LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG  250 (310)
Q Consensus       171 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (310)
                      .+.+|+|+...+    .++.+.  +   +....            .+++......+.++++.    .+...+..+.....
T Consensus       186 ~~~~~~~~~~~~----~~~~~~--~---~~~~~------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  240 (366)
T TIGR00886       186 FVGADTPPGKPA----TGKLSF--K---GARWS------------VGTGALGDQLKVFRDRH----TWILALLYSVTFGS  240 (366)
T ss_pred             HhcccCCccccc----chhccc--c---ccccc------------ccchhHHHHHHHHhccc----hhhHHHHHHHHHHH
Confidence            446666532110    000000  0   00000            00000001223333322    22223333333334


Q ss_pred             HHHHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          251 INVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       251 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      ...+..+.|.++++ .|+++.+++.+.....+.++++.++.++  +.||+|+|+.+..
T Consensus       241 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~r~g~~~~~~~  296 (366)
T TIGR00886       241 FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGA--ISDRLGGARKLLM  296 (366)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccch--HHHhhccchhHHH
Confidence            55677788888865 5999999999999999999999999999  9999999876554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.95  E-value=3.9e-26  Score=198.45  Aligned_cols=242  Identities=13%  Similarity=0.152  Sum_probs=185.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.++++.+.++.++..+++.+++.++++++|+++||+|||++++.+.++..++++.+.++++++.++++|+++|++.+
T Consensus        40 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~  119 (413)
T PRK15403         40 INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSIC  119 (413)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCch
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPN  178 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~  178 (310)
                      ...+....++.|++|+++|++++++...+..+|..++|.+++.+.+.   .+||+.|++.++..++..+.. +.+||+++
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~---~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        120 FIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF---VHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            66667778899999999999999999999999999999998877643   579999999888877766543 45788653


Q ss_pred             hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      .   ++++.+. +             ..              ..+++..+++    +.++...+...........+..+.
T Consensus       197 ~---~~~~~~~-~-------------~~--------------~~~~~~ll~~----~~~~~~~l~~~~~~~~~~~~~~~~  241 (413)
T PRK15403        197 R---GAVPFSA-K-------------SV--------------LRDFRNVFRN----RLFLTGAATLSLSYIPMMSWVAVS  241 (413)
T ss_pred             c---cCCCCCh-H-------------HH--------------HHHHHHHHcC----HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            1   0000000 0             00              0112333333    333333343444444556677788


Q ss_pred             HHHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhcc
Q 021634          259 PLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRW  301 (310)
Q Consensus       259 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~  301 (310)
                      |.++++. |.++.+.++.......+..++..+.+.  +.++..+
T Consensus       242 P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~--~~~~~~~  283 (413)
T PRK15403        242 PVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVAR--FVKDPTE  283 (413)
T ss_pred             hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCc
Confidence            9888765 899999999888777888887777766  5544333

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.95  E-value=6.7e-26  Score=197.11  Aligned_cols=249  Identities=15%  Similarity=0.140  Sum_probs=188.9

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +.+.++++.|+++.++..+.+.+++.+++++.|+++||+|||+++..+..+..++.+...++++++.+++.|++.|++.+
T Consensus        37 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~  116 (406)
T PRK15402         37 LAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLC  116 (406)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhh
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCch
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPN  178 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~  178 (310)
                      ...+....++.|++|+++|++..++......+|..++|.++..+.+.   .+||+.+++.++..++..+.. +..||+++
T Consensus       117 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        117 FIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV---LPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             hHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            88888889999999999999999998888888999999987766543   479999998887777665544 34676643


Q ss_pred             hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      ...++.+ .                    ++          ...++++.++++.    ++...+..+...........+.
T Consensus       194 ~~~~~~~-~--------------------~~----------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  238 (406)
T PRK15402        194 RVGEKLS-L--------------------KE----------LGRDYKLVLKNRR----FVAGALALGLVSLPLLAWIALS  238 (406)
T ss_pred             ccccccc-H--------------------HH----------HHHHHHHHHcCcH----HHHHHHHHHHHHHHHHHHHHHh
Confidence            1100000 0                    00          0011233333322    2222222222222233455567


Q ss_pred             HHHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          259 PLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       259 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      |.+++ +.|+++.+.+.......++..++.++.++  +.||+++|+.+.++
T Consensus       239 p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~--l~~r~~~~~~~~~~  287 (406)
T PRK15402        239 PVILISGEQLSSYEYGLLQVPVFGALIAGNLTLAR--LTSRRPLRSLIRMG  287 (406)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCHHHHHHHH
Confidence            87774 46999998888888778888899999999  99999999877654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.95  E-value=1e-25  Score=195.08  Aligned_cols=249  Identities=17%  Similarity=0.130  Sum_probs=189.6

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+.+++|.++.+.++..+.+.++..+++++.|+++||+|||+.+..+.++..++.+.+..+++++.+++.|++.|++.
T Consensus        26 lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~  105 (392)
T PRK10473         26 LPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGA  105 (392)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhh
Confidence            47788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~  177 (310)
                      +...+....++.|++|+++|+++.+..+....+|..++|.++..+.+   ..+||+.+++.++..++..+.. +++||++
T Consensus       106 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~---~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        106 GCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML---KFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            88888899999999999999999999999999999999999876653   2479999999887776665544 4467764


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      +..  +++ .++.                              ....++.++++.......    ...........+..+
T Consensus       183 ~~~--~~~-~~~~------------------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  225 (392)
T PRK10473        183 PAR--APA-ASSK------------------------------PRENSESLLNRFFLSRLV----ITTLSVTVILTFVNT  225 (392)
T ss_pred             Ccc--cCC-ccch------------------------------HHHHHHHHhCHHHHHHHH----HHHHHHHHHHHHHHh
Confidence            211  000 0000                              000011222211111111    111111222334455


Q ss_pred             HHHHH-HHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          258 APLLF-RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       258 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      .|.++ ++.|+++.+.+.......++.+++.+..++  +.||+|||+.+..++
T Consensus       226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~--l~~r~g~~~~~~~~~  276 (392)
T PRK10473        226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPF--ALGIFKPRTLMLTSQ  276 (392)
T ss_pred             CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCHHHHHHHHH
Confidence            67666 456999999999999999999999999999  999999999877653

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.95  E-value=3.4e-25  Score=197.64  Aligned_cols=283  Identities=15%  Similarity=0.190  Sum_probs=195.2

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.+++|+|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+.++..++.+..+++++++.+++.|++.|++.+
T Consensus        44 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~  123 (496)
T PRK03893         44 TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMA  123 (496)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS  179 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~  179 (310)
                      ...+....++.|++|+++|+++.++...+..+|..+++.++..+.+   .++||+.|++..+..++..+....+||++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~  200 (496)
T PRK03893        124 GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP---VWGWRALFFIGILPIIFALWLRKNLPEAEDW  200 (496)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHhCCCchhh
Confidence            9899999999999999999999999999999999999999876654   3579999987655544444444457777654


Q ss_pred             hHhccCcHHHHHHHHHHhcCCcchHHHHHHH-HHh----hhccccccchhh-------------hh-c-cccchhHHHHH
Q 021634          180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDL-LKA----SSTAKTINHPFK-------------KI-I-QRKYRPQLLMA  239 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~-------------~~-~-~~~~~~~~~~~  239 (310)
                      ..++++ .++.++..+.....+......... ...    ..........+.             .. . ....+++....
T Consensus       201 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (496)
T PRK03893        201 KEKHAG-KAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVM  279 (496)
T ss_pred             hhhccc-cccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            322111 111011111000000000000000 000    000000000000             00 0 00111122222


Q ss_pred             HHHHHHHHhhhHHHHHHhHHHHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          240 MAIPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .....+..+........++|.+++ +.|+++.+++.+.+...++.+++.++.++  +.||++||+.++.+
T Consensus       280 ~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~--l~dr~g~~~~~~~~  347 (496)
T PRK03893        280 LMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGF--LGDWLGTRKAYVCS  347 (496)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHH
Confidence            222222222222245678899995 67999999999999999999999999999  99999999887654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.94  E-value=1.5e-25  Score=191.97  Aligned_cols=252  Identities=13%  Similarity=0.016  Sum_probs=188.7

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV-----NVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~r~l~   94 (310)
                      |....+++.++.+.+++.++..++..+++++.|+++||+|||+++..+.++..++.++..+.+     +++.+++.|++.
T Consensus        23 ~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  102 (365)
T TIGR00900        23 PLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGIL  102 (365)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            345567888999999999999999999999999999999999999999999988888888877     999999999999


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcc-
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL-  173 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-  173 (310)
                      |++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+.   .+||+.+++.++..++..+..+.+ 
T Consensus       103 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~  179 (365)
T TIGR00900       103 AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT---LGIKWAIWVDAVGFAISALLIVSVR  179 (365)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999998877643   479999988777666555444433 


Q ss_pred             -cCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHH
Q 021634          174 -PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGIN  252 (310)
Q Consensus       174 -~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (310)
                       ||+++.   ++++.++  +             ..++.          ...++..++++..+...    ...+.......
T Consensus       180 ~~~~~~~---~~~~~~~--~-------------~~~~~----------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  227 (365)
T TIGR00900       180 IPELAAS---EIQALSN--A-------------VLRDT----------REGIKFVLKNPLLRTLL----LLALLFNLVFA  227 (365)
T ss_pred             cccCCCc---cccccch--h-------------HHHHH----------HhHHHHHHcCcHHHHHH----HHHHHHHHHHH
Confidence             332210   0000000  0             00000          11223333333222222    22222222223


Q ss_pred             HHH-HhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          253 VIA-FYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       253 ~~~-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      ... .+.|.+.++ .|.++.+.+.......++.+++.+..++  +.||.+||+.+..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~  283 (365)
T TIGR00900       228 PAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGL--LGRYFKRMALMTGA  283 (365)
T ss_pred             HHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHHhchhHHHHHH
Confidence            333 678888876 6999999999999999999999999999  99999999887654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.94  E-value=4e-25  Score=198.10  Aligned_cols=269  Identities=17%  Similarity=0.107  Sum_probs=191.2

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  103 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  103 (310)
                      +.+..+.....+..+++++|.++|++++|+++||+|||++++.+.++..++.+..++++|++.+++.|++.|++.++...
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~  190 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLT  190 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhH
Confidence            56667788889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchhhHhc
Q 021634          104 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQR  183 (310)
Q Consensus       104 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~  183 (310)
                      ....++.|++++++|+.+.++ ......++.+++..+.++..     +||+.+++..+++++.++.+++.||+|+|+..+
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-----~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~  264 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-----DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSK  264 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHc
Confidence            999999999999999999999 55555555555555554543     699999999999998887767778999999998


Q ss_pred             cCcHHHHHHHHHHhcCCc----chHHHHHHH---HHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHH
Q 021634          184 KSDHQKAKLMLQRVRGTN----DVEAEFDDL---LKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAF  256 (310)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (310)
                      ++ .+++.+..++..+.+    +.....+..   +.......+++..+.+.++.+..++......+.++.....+++   
T Consensus       265 g~-~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~g---  340 (521)
T KOG0255|consen  265 GR-IDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYG---  340 (521)
T ss_pred             Cc-hHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHh---
Confidence            88 777777777765432    111111111   1111111122345667776553333333333333222222222   


Q ss_pred             hHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          257 YAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       257 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                       ++......|.+...   .....+.....+....+.  ..|+.|||.....+
T Consensus       341 -l~~~~~~lg~~~~~---~~~~~~~~~~p~~~~~~~--~~~~~gR~~~~~~~  386 (521)
T KOG0255|consen  341 -LSLNVSGLGGNIYL---NFTLSGLVELPAYFRNGL--LLPEFGRRPPLFLS  386 (521)
T ss_pred             -hhhhhhhcCchHHH---HHHHHHHHHhhHHHHHHH--HHHHhCcHHHHHHH
Confidence             22222334433322   222333366666677777  89999999887765

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.94  E-value=1.9e-25  Score=196.67  Aligned_cols=260  Identities=16%  Similarity=0.090  Sum_probs=184.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA----VNVYMLIFGRLLLG   95 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G   95 (310)
                      |++.++ |+++++.++..+.+.+++.+++++.|+++||+|||+++..+.++.+++.+.++++    .+++.+++.|++.|
T Consensus        53 p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~g  131 (452)
T PRK11273         53 PYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG  131 (452)
T ss_pred             HHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHH
Confidence            567777 9999999999999999999999999999999999999999999999998888775    36778889999999


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHhhHHHHHHHH-HHhhcc
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGAL-AANFINYGTEQIKGGWGWRVSLALAAVPASILT-LGALFL  173 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~-~~~~~~  173 (310)
                      ++.+...+.....+.|++|+++|++++++++.+..+|.. .++.++..+...   .+||+.|++.+++.++.. +..+++
T Consensus       132 i~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~---~gw~~~f~i~~~~~~~~~~l~~~~~  208 (452)
T PRK11273        132 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWF---NDWHAALYMPAFAAILVALFAFAMM  208 (452)
T ss_pred             HHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHc
Confidence            999888888888899999999999999999999998864 455443322221   379999999877766654 444567


Q ss_pred             cCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhcc-ccchhHHHHHHHHHHHHHhhhHH
Q 021634          174 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQ-RKYRPQLLMAMAIPFFQQVTGIN  252 (310)
Q Consensus       174 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  252 (310)
                      ||+|+....+ + .++.++   +..          +..++   ++..+.+.++.+. ...+++.++...+..+......+
T Consensus       209 ~~~~~~~~~~-~-~~~~~~---~~~----------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  270 (452)
T PRK11273        209 RDTPQSCGLP-P-IEEYKN---DYP----------DDYNE---KHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY  270 (452)
T ss_pred             cCCHhhcCCC-C-hhhhhh---ccc----------ccccc---ccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence            8876532111 0 111000   000          00000   0000111222211 11223334444444444444456


Q ss_pred             HHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHh--ccch
Q 021634          253 VIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRV--RWRK  303 (310)
Q Consensus       253 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~--g~r~  303 (310)
                      ....|.|.|+++ .|++..+++....+..++.+++.++.++  ++||+  +||+
T Consensus       271 ~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~--l~dr~~~~r~~  322 (452)
T PRK11273        271 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW--MSDKVFRGNRG  322 (452)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHccCCcc
Confidence            678899999976 5899999999888889999999999999  99999  4553

>PRK10133 L-fucose transporter; Provisional

Probab=99.94  E-value=3.2e-25  Score=193.80  Aligned_cols=253  Identities=11%  Similarity=0.088  Sum_probs=181.1

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHh
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GAAVNVYMLIFGRLLLG   95 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G   95 (310)
                      .|.+++++++|+.+.+++.+.+.+++.+++++.|+++||+|||+++..+..+..++++++   ..+++++.++++|+++|
T Consensus        49 ~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G  128 (438)
T PRK10133         49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIA  128 (438)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            377899999999999999999999999999999999999999999999999999999875   46789999999999999


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc-ccC-------------C---C------chh
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE-QIK-------------G---G------WGW  152 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~-------------~---~------~~w  152 (310)
                      ++.+...+....++.|+.|+++|...++..+..+.+|..+++.++..+. ...             +   .      .+|
T Consensus       129 ~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w  208 (438)
T PRK10133        129 AGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSV  208 (438)
T ss_pred             HHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHH
Confidence            9999999999999999877777777899999999999999998876433 110             0   0      256


Q ss_pred             HHHHHhhH-HHHHHHHHHh-hcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccc
Q 021634          153 RVSLALAA-VPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQR  230 (310)
Q Consensus       153 r~~~~~~~-~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (310)
                      |++|+... +..++..+.. ...||.+..    ++ .++                          ++.+...+.++.+++
T Consensus       209 ~~~f~~~~~v~~~~~~~~~~~~~p~~~~~----~~-~~~--------------------------~~~~~~~~~~~ll~~  257 (438)
T PRK10133        209 QTPYMIIVAIVLLVALLIMLTKFPALQSD----NH-SDA--------------------------KQGSFSASLSRLARI  257 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCcc----cc-ccc--------------------------cccchhhhHHHHHhC
Confidence            66775433 3333332222 224542210    00 000                          000001112333433


Q ss_pred             cchhHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          231 KYRPQLLMAMAIPFFQQVTGINVIAFYAPLLF-RT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      +..+...    +..+...........|.+.++ ++ .|+++.+++.......++.++|++.+++  +.||+++|+++..+
T Consensus       258 ~~~~~~~----l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~--l~~r~g~~~~l~~~  331 (438)
T PRK10133        258 RHWRWAV----LAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW--LISRFAPHKVLAAY  331 (438)
T ss_pred             chHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCHHHHHHHH
Confidence            3322222    222222233344455677664 54 5999999999999999999999999999  99999999886654

>PRK11043 putative transporter; Provisional

Probab=99.94  E-value=2.8e-25  Score=192.92  Aligned_cols=242  Identities=15%  Similarity=0.098  Sum_probs=187.7

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +.+++++|.++++.++..+++.++..++++++|+++||+|||+.+..+..+..++.+.+.++++++.+++.|++.|++.+
T Consensus        30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~  109 (401)
T PRK11043         30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVC  109 (401)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS  179 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~  179 (310)
                      ...+....++.|++|++++++..+.......+|..++|.+++.+.+.   .+||+.+++.++..++..+..++++|+++.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (401)
T PRK11043        110 SAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH---FGWQAIFATLFAITLLLILPTLRLKPSKKA  186 (401)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            77777788899999999999999988888889999999988776643   479999998888777766666666654321


Q ss_pred             hHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 021634          180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP  259 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (310)
                      .   ++  ++                              .+.++++.++++..+....    ........+.....+.|
T Consensus       187 ~---~~--~~------------------------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~p  227 (401)
T PRK11043        187 R---KQ--SQ------------------------------DALTFKQLLKSKTYLGNVL----IFAACSAAFFAWLTGSP  227 (401)
T ss_pred             c---cc--ch------------------------------HHHHHHHHHcChhHHHHHH----HHHHHHHHHHHHHHHhH
Confidence            0   00  00                              0011233333322111111    11122223345566788


Q ss_pred             HHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhh
Q 021634          260 LLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLD  305 (310)
Q Consensus       260 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~  305 (310)
                      .++++.|+++.+.+.......++..+|.+..++  +.||+++|+..
T Consensus       228 ~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~--l~~r~~~~~~~  271 (401)
T PRK11043        228 FILEQMGYSPADIGLSYVPQTIAFLVGGYGCRA--ALQKWGGEQLL  271 (401)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCHHHHH
Confidence            888888999999998888888888899999998  99999988754

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.94  E-value=1.2e-24  Score=188.15  Aligned_cols=244  Identities=20%  Similarity=0.215  Sum_probs=178.1

Q ss_pred             cchhHHHHHHHH-----HHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHH--------HHHHHHHHH
Q 021634           28 FDSQLLTSFTSS-----LYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVY--------MLIFGRLLL   94 (310)
Q Consensus        28 ~~~~~~~~~~~~-----~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~r~l~   94 (310)
                      .++++.+...+.     .+++..+++++.|+++||+|||+++..+.++..++.+++++++++.        .+++.|+++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~  106 (394)
T TIGR00883        27 SGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQ  106 (394)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHH
Confidence            344555554433     3334457899999999999999999999999999999999988875        477889999


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc-----CCCchhHHHHHhhHHHHHHHHHH
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI-----KGGWGWRVSLALAAVPASILTLG  169 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~~wr~~~~~~~~~~~~~~~~  169 (310)
                      |++.+...+....++.|++|+++|++..+..+.+..+|.++++.++..+...     ...++||+.+++.+++.++....
T Consensus       107 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  186 (394)
T TIGR00883       107 GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL  186 (394)
T ss_pred             HhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998887655431     12468999998877776665555


Q ss_pred             hhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhh
Q 021634          170 ALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT  249 (310)
Q Consensus       170 ~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (310)
                      ....||++++..++++                               +++.+.+.++.++++. ++ ++......+....
T Consensus       187 ~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~  233 (394)
T TIGR00883       187 RRNLEETPVFEKAQEK-------------------------------HKKKRGPIRETLTKHR-KP-FLLGLGLVIATTT  233 (394)
T ss_pred             HHhcCCChhHHHHHhc-------------------------------cccccCCHHHHHHhch-HH-HHHHHHHHHHHHH
Confidence            4556766532211000                               0001122333333221 11 2223333344444


Q ss_pred             hHHHHHHhHHHHH-HHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhh
Q 021634          250 GINVIAFYAPLLF-RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  306 (310)
Q Consensus       250 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~  306 (310)
                      .......+.|.++ ++.|.++.+.+.......++..++.++.++  +.||+|||+.+.
T Consensus       234 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~dr~g~~~~~~  289 (394)
T TIGR00883       234 TFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGA--LSDRIGRRPVLI  289 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHhchHHHHH
Confidence            5566778889998 456899999999999999999999999999  999999998765

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.94  E-value=7.5e-25  Score=188.80  Aligned_cols=244  Identities=14%  Similarity=0.057  Sum_probs=181.2

Q ss_pred             ccccc-ccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHH
Q 021634           20 TKISN-YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLL   93 (310)
Q Consensus        20 ~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l   93 (310)
                      +.+.+ |+++|++|.+++.+++.+++.+..++.|++.||+|.|+++.++.++..+.++..+++     ++++.+++.|++
T Consensus        58 ~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l  137 (462)
T PRK15034         58 VNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALL  137 (462)
T ss_pred             HHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHH
Confidence            44444 899999999999999999999999999999999999999999999999999999887     899999999999


Q ss_pred             HhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc-----c----------cCCCchhHHHHHh
Q 021634           94 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE-----Q----------IKGGWGWRVSLAL  158 (310)
Q Consensus        94 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-----~----------~~~~~~wr~~~~~  158 (310)
                      .|++ +..++.....+++|+|+++||+++++.....++|..+++++...+.     .          ..+..+||.+.++
T Consensus       138 ~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~  216 (462)
T PRK15034        138 CGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWI  216 (462)
T ss_pred             HHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHH
Confidence            9997 7788899999999999999999999997666666655444433211     1          0113468888888


Q ss_pred             hHHHHHHHHHHhhcc-cCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHH
Q 021634          159 AAVPASILTLGALFL-PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLL  237 (310)
Q Consensus       159 ~~~~~~~~~~~~~~~-~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (310)
                      .+++.++..++.++. +|.++   .+..                                   .....+.+|+    +..
T Consensus       217 ~~~~~iv~~i~~~~~~~~~~~---~~~~-----------------------------------~~~~~~vlk~----~~~  254 (462)
T PRK15034        217 WVPLLAIATIAAWSGMNDIAS---SRAS-----------------------------------IADQLPVLQR----LHL  254 (462)
T ss_pred             HHHHHHHHHHHHHHhCCCccc---cccC-----------------------------------HHHHHHHhCC----Cch
Confidence            777777666555553 33221   0000                                   0011223333    334


Q ss_pred             HHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          238 MAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      +.+.+.++..+..+..+..++|++.++. ++.........+..+.+.++.+++|+  ++||+|+|+++++++
T Consensus       255 Wllslly~~tFG~fvg~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~--LADRiG~~~vl~~~~  323 (462)
T PRK15034        255 WLLSLLYLATFGSFIGFSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGA--ISDKFGGVRVTLINF  323 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHH--HHHhcCchHHHHHHH
Confidence            5556666777777888888999998663 44444443444556778888999999  999999999877653

>TIGR00896 CynX cyanate transporter

Probab=99.94  E-value=1.1e-24  Score=186.19  Aligned_cols=243  Identities=19%  Similarity=0.195  Sum_probs=182.2

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+++|+|+|+++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.+ .+++.+.+++.|++.|++.+
T Consensus        24 p~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~  102 (355)
T TIGR00896        24 PQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIA  102 (355)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999998888888777 77889999999999999998


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS  179 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~  179 (310)
                      ...+....++.|++| ++|+++.+.++.+..+|..+++.++..+.+... .+||+.|.+.++..++...  .++|+.++.
T Consensus       103 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-~~w~~~f~~~~~~~~~~~~--~~~~~~~~~  178 (355)
T TIGR00896       103 IINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-GHWQQALAWWALPALLALL--AWIPQVRRR  178 (355)
T ss_pred             HHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH--HHhhhhccc
Confidence            888888888899886 689999999999999999999888776654321 2499988776655443322  234443210


Q ss_pred             hHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 021634          180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP  259 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (310)
                      .   ++  +                            ++..+...++.+++    +..+...+..+.....+.....+.|
T Consensus       179 ~---~~--~----------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lp  221 (355)
T TIGR00896       179 V---AA--N----------------------------QTTTRLTPVRIWRS----PLAWQVTVFFGLQSGLYYSLIGWLP  221 (355)
T ss_pred             c---CC--C----------------------------CCCCCCCCchhhcC----HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0   00  0                            00000112233332    2222223333333444566778899


Q ss_pred             HHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhc-cchhhh
Q 021634          260 LLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVR-WRKLDI  306 (310)
Q Consensus       260 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g-~r~~~~  306 (310)
                      .++++.|.++.+.+...+...++.+++.++.++  +.||++ ||+.+.
T Consensus       222 ~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~--l~dr~~~~~~~~~  267 (355)
T TIGR00896       222 AILISHGASAATAGSLLALMQLAQAASALLIPA--LARRVKDQRGIVA  267 (355)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHH--HHhhhccchHHHH
Confidence            999888999999999999999999999999999  999995 555443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.94  E-value=4e-25  Score=193.88  Aligned_cols=260  Identities=16%  Similarity=0.088  Sum_probs=184.3

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA----VNVYMLIFGRLLLG   95 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G   95 (310)
                      |.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.+..++.    ++++.+.+.|++.|
T Consensus        51 p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g  129 (438)
T TIGR00712        51 PYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNG  129 (438)
T ss_pred             HHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            45554 59999999999999999999999999999999999999999999999988877654    46777888999999


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHH-Hhhccc
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL-GALFLP  174 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~-~~~~~~  174 (310)
                      ++.+..++.....+.|++|+++|++++++.+.+..+|..+++.+......  ...+||+.|++.+++.++..+ ..+++|
T Consensus       130 ~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~--~~~~w~~~f~~~~~~~~i~~~~~~~~~~  207 (438)
T TIGR00712       130 WFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMA--WFNDWHAALYFPAICAIIVALFAFAMMR  207 (438)
T ss_pred             HHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99998888888999999999999999999999999998888776543322  124799999998888776554 445578


Q ss_pred             CCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchh-hhhccccchhHHHHHHHHHHHHHhhhHHH
Q 021634          175 ETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPF-KKIIQRKYRPQLLMAMAIPFFQQVTGINV  253 (310)
Q Consensus       175 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (310)
                      |+|+....++  .++.++     +...+.    .   ++.+.+.+.+..+ +..+++    +.++...+..+......+.
T Consensus       208 ~~~~~~~~~~--~~~~~~-----~~~~~~----~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  269 (438)
T TIGR00712       208 DTPQSCGLPP--IEEYRN-----DYPDDY----N---EKAEQELTAKEIFMQYVLPN----KLLWYIAIANVFVYLLRYG  269 (438)
T ss_pred             CCHHhcCCCC--chhccc-----cccccc----c---cccccccchHHHHHHHHccC----chHHHHHHHHHHHHHHHHH
Confidence            8764321110  000000     000000    0   0000000000011 112222    2333333333333344566


Q ss_pred             HHHhHHHHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccc
Q 021634          254 IAFYAPLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  302 (310)
Q Consensus       254 ~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r  302 (310)
                      +..|.|.++++. |+++.+++....+..+.++++.+.+++  +.||++++
T Consensus       270 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~--l~dr~~~~  317 (438)
T TIGR00712       270 VLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW--MSDKVFKG  317 (438)
T ss_pred             HHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHH--HHHHhccC
Confidence            778999999764 999999999999999999999999999  99999644

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.94  E-value=3e-26  Score=207.45  Aligned_cols=270  Identities=15%  Similarity=0.177  Sum_probs=197.8

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhh----------------
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV----------------   82 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----------------   82 (310)
                      .+.++++|+++..+.|++.+.+.++++++.++.++++||+|||+.+.++.++.+++++++++.+                
T Consensus        56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~  135 (633)
T TIGR00805        56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTG  135 (633)
T ss_pred             chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccc
Confidence            4789999999999999999999999999999999999999999999999999999999887653                


Q ss_pred             -----------------------------------hHHHHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHH
Q 021634           83 -----------------------------------NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQF  127 (310)
Q Consensus        83 -----------------------------------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  127 (310)
                                                         .+..++++|+++|+|.+..++...+++.|++|+++|+++.++++.
T Consensus       136 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~  215 (633)
T TIGR00805       136 NLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILES  215 (633)
T ss_pred             cccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHH
Confidence                                               245677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcccCCC-----------------c--hhHHHHHhhHHHHHHHHHHhhcccCCchhhHhccCcHH
Q 021634          128 SIGIGALAANFINYGTEQIKGG-----------------W--GWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQ  188 (310)
Q Consensus       128 ~~~~g~~~~~~~~~~~~~~~~~-----------------~--~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~  188 (310)
                      +..+|..+++++++.+......                 |  .|+..|++.+++.++..+..+++|++.+....+.+ .+
T Consensus       216 ~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~-~~  294 (633)
T TIGR00805       216 IAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEGKRVN-VD  294 (633)
T ss_pred             HHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcccccc-hh
Confidence            9999999999998876643210                 1  37778888888887776666667765321110000 00


Q ss_pred             HHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCC
Q 021634          189 KAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT-IGL  267 (310)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~  267 (310)
                      ..++  +......+.  ...+       .........+.++...+++.++...+..+.....++.+..|+|.|+++ .|+
T Consensus       295 ~~~~--~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~  363 (633)
T TIGR00805       295 VHET--EKLEKSEDK--SRKK-------NSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGI  363 (633)
T ss_pred             hhhh--hcccccccc--cchh-------hhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            0000  000000000  0000       000000111122233344566666666666677788899999999975 699


Q ss_pred             CchhHHHHHHHHHh-hhhhhhhHHHHHHHHHHhccc
Q 021634          268 GRLKVCQLSKWIEC-GGSIGFGRNMWVKWMNRVRWR  302 (310)
Q Consensus       268 ~~~~~~~~~~~~~~-~~~~g~~~~~~~~l~d~~g~r  302 (310)
                      ++.+++.+.....+ +.++|.+++++  ++||++.+
T Consensus       364 s~~~ag~l~~~~~i~~~~vG~~l~G~--l~~r~~~~  397 (633)
T TIGR00805       364 SSAEANFLIGVVNLPAAGLGYLIGGF--IMKKFKLN  397 (633)
T ss_pred             cHHHHHHHhhhhhhhHHHHHHhhhhh--eeeeeccc
Confidence            99999999888766 56899999999  99998843

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=1.5e-24  Score=175.24  Aligned_cols=281  Identities=19%  Similarity=0.156  Sum_probs=217.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.+..|.+..+..+++...+.+..+++..+|.++|++|||+.+.......++..++.+.++|+..+.+.|.+.|+|.|
T Consensus       102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~g  181 (528)
T KOG0253|consen  102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVG  181 (528)
T ss_pred             HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCC
Confidence            55667778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS  179 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~  179 (310)
                      + .|...++-.|..|..+|...+-+. ..+.+|.+....+++.....   +||||.....+.+..+..+..+++|||||+
T Consensus       182 g-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~---~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf  256 (528)
T KOG0253|consen  182 G-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN---FGWRYLLFTSSTPLMFAARFLVWVYESPRF  256 (528)
T ss_pred             C-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHhHHHHHHHHHhhcccCcch
Confidence            8 888888889999999998876666 89999999999998766543   589999988888888888888999999999


Q ss_pred             hHhccCcHHHHHHHHHHhcCCcchH-----------HHHHHHH-----HhhhccccccchhhhhccccchhHHHHHHHHH
Q 021634          180 LIQRKSDHQKAKLMLQRVRGTNDVE-----------AEFDDLL-----KASSTAKTINHPFKKIIQRKYRPQLLMAMAIP  243 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (310)
                      ...+++ +++|.+.++++...|..+           .++++.+     ......++.+....+++..+.++.++....+.
T Consensus       257 ~~~~G~-~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iw  335 (528)
T KOG0253|consen  257 YLAKGD-DYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIW  335 (528)
T ss_pred             hhhcCC-hHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHH
Confidence            998888 888888888776655221           0111100     11122234455667778777777777655554


Q ss_pred             HHHHhhhHHHHHHhHHHHHHHcC--------------------CCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccch
Q 021634          244 FFQQVTGINVIAFYAPLLFRTIG--------------------LGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRK  303 (310)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~g--------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~  303 (310)
                      +...+ .+++........++...                    .+...-..-..+..+..+.|.++.++  ++||+|||+
T Consensus       336 fgnaf-syyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~--iverlGRKk  412 (528)
T KOG0253|consen  336 FGNAF-SYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGV--IVERLGRKK  412 (528)
T ss_pred             HhhHH-HHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHH--HHHHhcchh
Confidence            44444 34444444444443321                    12233445567788999999999999  999999999


Q ss_pred             hhhhcc
Q 021634          304 LDIYTL  309 (310)
Q Consensus       304 ~~~~~~  309 (310)
                      .+...+
T Consensus       413 TMal~l  418 (528)
T KOG0253|consen  413 TMALSL  418 (528)
T ss_pred             HHHHHH
Confidence            987543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.93  E-value=1.8e-24  Score=186.89  Aligned_cols=250  Identities=13%  Similarity=0.081  Sum_probs=183.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +.+.+|++.++.+.+++.+.+.+.+.+.++++|+++||+|||++++.+.++..++++.+.++.+.   ++.|+++|++.+
T Consensus        27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a  103 (393)
T PRK11195         27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAA  103 (393)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence            34568889999999999999999999999999999999999999999999999988887776664   678999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS  179 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~  179 (310)
                      ...|...+++.|++|+++|++++++.+....+|..++|.+++.+.+.    .|+..+.+.+...++..+..+.+||++++
T Consensus       104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~----~~~~~~~i~~~~~~~~~~~~~~l~~~~~~  179 (393)
T PRK11195        104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP----HAEAALAVCALIYLLAALFNLFIPRLGAR  179 (393)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCccc
Confidence            99999999999999999999999999999999999999999988753    37777766655555444555668886532


Q ss_pred             hHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 021634          180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP  259 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (310)
                      ...++.+..+                ...+..          ..++..++++..+.......+.+.    .........|
T Consensus       180 ~~~~~~~~~~----------------~~~~~~----------~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~  229 (393)
T PRK11195        180 RPGQSWNPIA----------------LLRDFF----------HACRVLWRDKLGRFSLAGTTLFWG----AGATLRFLVL  229 (393)
T ss_pred             ccccCCCHHH----------------HHHHHH----------HHHHHHHhCchhHHHHHHHHHHHH----HHHHHHHHHH
Confidence            1111110000                000000          011233434333332222222111    2233445556


Q ss_pred             HHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          260 LLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       260 ~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .++++ .|.++.+.+.......++.+++.+..++  +.||.++|+.+..+
T Consensus       230 ~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~--l~~~~~~~~~~~~g  277 (393)
T PRK11195        230 AWAPVALGITLNQPAYLQAVVAIGIAVGAGAAAR--LVTLETVLRVLPAG  277 (393)
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH--HhcCCcccchHHHH
Confidence            66654 5999999999999999999999999999  89998888766544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.93  E-value=2.8e-24  Score=186.33  Aligned_cols=248  Identities=12%  Similarity=0.085  Sum_probs=182.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHhh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA---AVNVYMLIFGRLLLGV   96 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~   96 (310)
                      |.+++++|+++.+.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++...   .++++.+++.|++.|+
T Consensus        27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~  106 (410)
T TIGR00885        27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTA  106 (410)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence            7789999999999999999999999999999999999999999999999999999887544   3689999999999999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC-----------------------CCchhH
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK-----------------------GGWGWR  153 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----------------------~~~~wr  153 (310)
                      +.|...+....++.+..|+++|++.+++.+...++|..+++.++..+....                       +..+||
T Consensus       107 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  186 (410)
T TIGR00885       107 GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQ  186 (410)
T ss_pred             hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999877654221                       113699


Q ss_pred             HHHHhhHHHHHHHHHHhhc--ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhcccc
Q 021634          154 VSLALAAVPASILTLGALF--LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRK  231 (310)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (310)
                      ++|++.+++.++..+...+  .||.++     ++  ++                           +.....+.++.++++
T Consensus       187 ~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~--~~---------------------------~~~~~~~~~~~~~~~  232 (410)
T TIGR00885       187 TPYMIIGAVVLAVALLIMLTKMPALNH-----SD--AK---------------------------QISFSASLSRLARIR  232 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc--cc---------------------------cccchhhHHHHHhCh
Confidence            9998888777665544433  333211     00  00                           000001112233332


Q ss_pred             chhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc--CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          232 YRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTI--GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      ....    ..+..+...........+++.|.++.  +.+...+.........+..+|++++++  +.||+++|+++.+
T Consensus       233 ~~~~----~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~--l~~r~~~~~~l~i  304 (410)
T TIGR00885       233 HYRE----GVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTW--LISYLAAHKVLMA  304 (410)
T ss_pred             hHHH----HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCHHHHHHH
Confidence            2222    22233333334445567788888665  444455555666666788999999999  9999999987653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.93  E-value=3e-24  Score=184.75  Aligned_cols=245  Identities=15%  Similarity=0.117  Sum_probs=177.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLM-GGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .++++++|.|+.+.+++.+.+.+...+.+++.|+++||+|||+.++. +..+..++.++++++++++.+++.|++.|.+.
T Consensus        22 ~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  101 (375)
T TIGR00899        22 LFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFA  101 (375)
T ss_pred             HHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhh
Confidence            35788999999999999999999999999999999999999887654 56666677788888999999999999998887


Q ss_pred             cccccchhhhhhhcccccchhhh--hhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccC
Q 021634           99 GFANQSVPLYLSEMAPARYRGAI--NNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPE  175 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~e  175 (310)
                      +...+....+..|+.|+++|++.  .+....+.++|..+++.+++.+.+.   .+||+.|++.+++.++..+.. +++||
T Consensus       102 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~  178 (375)
T TIGR00899       102 STANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG---FGFTVMFLTAALAFVLCGVLVWLFLPS  178 (375)
T ss_pred             hhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh---cccHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            77778888888898887777654  5777788889999999998877643   579999999888777665554 44788


Q ss_pred             CchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHH
Q 021634          176 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIA  255 (310)
Q Consensus       176 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (310)
                      +|++..++++                                   +.+.++.++++..+.......+    .........
T Consensus       179 ~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  219 (375)
T TIGR00899       179 YPRGAPGALT-----------------------------------RLEVRGLLASRDTRLLFVACTL----MWGCNILYI  219 (375)
T ss_pred             cccCcccccC-----------------------------------cchhhhhhcCcchHHHHHHHHH----HHHHHHHHH
Confidence            6642110000                                   0001112222222222221111    112223345


Q ss_pred             HhHHHHH-HHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          256 FYAPLLF-RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       256 ~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .+.|.++ ++.|.++.+.+.......+...++.++.++  +.||++||+.+..+
T Consensus       220 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~--l~~r~g~~~~~~~~  271 (375)
T TIGR00899       220 INMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGY--LIKRFGKRRLMLLA  271 (375)
T ss_pred             hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhcchhHHHHH
Confidence            5667777 456999999988887777777888889999  99999999887654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1e-24  Score=180.09  Aligned_cols=248  Identities=16%  Similarity=0.175  Sum_probs=197.7

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHhh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNV---YMLIFGRLLLGV   96 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~r~l~G~   96 (310)
                      +.+.+|+++|++|.+++.++..+...+..++.|.+.||||.|++..++.++..+-++..+++.+.   +++++++++.|+
T Consensus        38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~  117 (417)
T COG2223          38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGL  117 (417)
T ss_pred             hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhc
Confidence            66779999999999999999999999999999999999999999999999999999999988554   499999999999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccC
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPE  175 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~e  175 (310)
                      + |..+.+...++++++|+|++|.++++.. ..++|..+...++..+......-.|+....+..+..++..+..++ +.|
T Consensus       118 ~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         118 A-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             c-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            7 5678888899999999999999999999 777887777666655543321112999988888887776666544 665


Q ss_pred             CchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHH
Q 021634          176 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIA  255 (310)
Q Consensus       176 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (310)
                      .|......++ ..                                ..+.++.    .+++..+.+.+.++..+.++..+.
T Consensus       196 ~p~~r~~~~~-~~--------------------------------~~~~~~v----~~~~~~W~lsllY~~tFG~Fvgfs  238 (417)
T COG2223         196 VPEHRASVKP-QL--------------------------------PAQLKAV----FSNKDTWLLSLLYFATFGGFVGFS  238 (417)
T ss_pred             Chhhhccccc-cc--------------------------------hhHHHHH----hcCcchHHHHHHHHHHHHHHHHHH
Confidence            5532111100 00                                0112222    223446667788888889999999


Q ss_pred             HhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          256 FYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       256 ~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .++|.|+++ +|.++.+++.......+.+.+.+..+|+  ++||+|.++++...
T Consensus       239 ~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~--LsDR~Gg~rv~~~~  290 (417)
T COG2223         239 AYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGW--LSDRIGGRRVTLAV  290 (417)
T ss_pred             HHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccch--hhhhccchhHHHHH
Confidence            999999965 5999999999999999999999999999  99999988877653

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.93  E-value=3.2e-24  Score=184.98  Aligned_cols=240  Identities=13%  Similarity=0.098  Sum_probs=176.2

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.+++|.|+.+.+++.+.+.+++.+++++.|+++||+|||+.+..+.++..++...++++++++.++++|+++|++.+
T Consensus        30 p~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~  109 (381)
T PRK03633         30 PLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCA  109 (381)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            66777899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC-CCchhHHHHHhhHHHHHHHH-HHhhcccCCc
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK-GGWGWRVSLALAAVPASILT-LGALFLPETP  177 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~wr~~~~~~~~~~~~~~-~~~~~~~es~  177 (310)
                      ...+.....+.+..++++|+++++.+..+..+|..+++.++..+.+.. ....|+..     ....... +.....+|++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  184 (381)
T PRK03633        110 MIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTG-----LVLAAILPLLFTRILNQQ  184 (381)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHH-----HHHHHHHHHHHhcccCCC
Confidence            888887777888899999999999999999999999999987765431 11223322     1111111 1111122210


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      +     ++                                 ++..+.++.++++..+.    .....+.....+.....+
T Consensus       185 ~-----~~---------------------------------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  222 (381)
T PRK03633        185 A-----EN---------------------------------HDSTSIWPMLKLRQARL----GVNGCIISGIVLGSLYGL  222 (381)
T ss_pred             C-----CC---------------------------------CCCCCHHHHHHhcchHH----HHHHHHHHHHHHHHHHHH
Confidence            0     00                                 00011122233222111    111111222223445567


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          258 APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       258 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .|.++++.|.++.+.+.+.....++.+++.+..++  +.||+++|+.+..+
T Consensus       223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~--l~dr~~~~~~l~~~  271 (381)
T PRK03633        223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGR--LADRFGRLLVLRVQ  271 (381)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHH--HHHHcCcHHHHHHH
Confidence            89999888999999999999999999999999999  99999999887643

>TIGR00897 2A0118 polyol permease family

Probab=99.93  E-value=5.7e-24  Score=184.62  Aligned_cols=246  Identities=11%  Similarity=0.059  Sum_probs=175.4

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh---h-hhhHHHHHHHHHHHhhc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG---A-AVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~   97 (310)
                      +.+|+|.|+++.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.+++.   . ..+++.+++.|++.|++
T Consensus        39 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g  118 (402)
T TIGR00897        39 FLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLG  118 (402)
T ss_pred             HHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcc
Confidence            4478899999999999999999999999999999999999999999999988876542   3 35788888999999999


Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHHHHHHH-HHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccC
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGA-LAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPE  175 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~e  175 (310)
                      .+...+.....+.|++|+++|++++++.+.+.++|. .+++.++..+.+.   .||+..++......++..+.. ++.+|
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~  195 (402)
T TIGR00897       119 YPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA---FGEMNTLWSALAFVLTGGVIALFSNKD  195 (402)
T ss_pred             hHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHHHhccCC
Confidence            887777777888999999999999999999999996 5788887655432   455444443322222222222 33444


Q ss_pred             CchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHH
Q 021634          176 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIA  255 (310)
Q Consensus       176 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (310)
                      .++.. ++++ +++                 .++.          ...++..++++    .++...+..+........+.
T Consensus       196 ~~~~~-~~~~-~~~-----------------~~~~----------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  242 (402)
T TIGR00897       196 IFTPQ-HMQT-REK-----------------FSEL----------GKAATILFTNP----NVLLGGMVRIINTIGLFGFA  242 (402)
T ss_pred             CCCcc-cccC-Ccc-----------------hhhH----------HHHHHHHHcCh----hHHHHHHHHHHHHHHHHHHH
Confidence            32100 0000 000                 0000          01122333332    23333333344445566778


Q ss_pred             HhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhh
Q 021634          256 FYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLD  305 (310)
Q Consensus       256 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~  305 (310)
                      .+.|.++++.|+++.+.+.......++..++.+..++  +.||++||+..
T Consensus       243 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~--l~dr~~~~~~~  290 (402)
T TIGR00897       243 VFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGI--VGDKLGWMNTV  290 (402)
T ss_pred             HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHhhcchhHH
Confidence            8999999889999999999888899999999999999  99999988765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10504 putative transporter; Provisional

Probab=99.93  E-value=9.5e-24  Score=187.12  Aligned_cols=278  Identities=14%  Similarity=0.120  Sum_probs=196.2

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      .|.+.+|+|.++.+.+++.+.+.++..++.+++|+++||+|||+++..+..+..++.+.+.++++++.+++.|+++|++.
T Consensus        33 ~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~  112 (471)
T PRK10504         33 LPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGG  112 (471)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Confidence            46678899999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es~  177 (310)
                      +...+....++.|++|+++|+++.+......++|..++|.+++.+.+.   .+||+.|++......+..+.... .|+++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~---~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        113 AMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY---ASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh---ccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            999999999999999999999999999999999999999998877653   47999999877766655544433 45443


Q ss_pred             hhhHhccCcHHHHHH-H-----HHH-hcCCcc---hHHHHH-----------HHHHhhhccccccchhhhhccccchhHH
Q 021634          178 NSLIQRKSDHQKAKL-M-----LQR-VRGTND---VEAEFD-----------DLLKASSTAKTINHPFKKIIQRKYRPQL  236 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~-~-----~~~-~~~~~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (310)
                      ...  ++.+...... .     ... ..+.+.   ......           -...+....+++..+. +.++++    .
T Consensus       190 ~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~----~  262 (471)
T PRK10504        190 MQT--RRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTR----T  262 (471)
T ss_pred             ccC--CCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhccc----c
Confidence            211  1111111000 0     000 000000   000000           0000000111111111 233332    2


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          237 LMAMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      +.......+...........+.|+|++. .|.++.++++......++..++..+.+.  +.||+|+|+++..+
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~--l~~r~g~~~~~~~~  333 (471)
T PRK10504        263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQ--VVNRFGYRRVLVAT  333 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCchHHHHHH
Confidence            2223333333333445567788888875 6999999999998888888888888999  99999999987754

>PRK12382 putative transporter; Provisional

Probab=99.92  E-value=1.1e-23  Score=182.31  Aligned_cols=237  Identities=14%  Similarity=0.079  Sum_probs=167.6

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh--------hhhhHHHHHHHHH
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG--------AAVNVYMLIFGRL   92 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~r~   92 (310)
                      ++++|+|.|+.+.+++.+.+.+++.++++++|+++||+|||++++.+.+...++.+...        ..++++.++++|+
T Consensus        41 ~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~  120 (392)
T PRK12382         41 FVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRL  120 (392)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999998887776654321        1357889999999


Q ss_pred             HHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634           93 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus        93 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      ++|++.+...+....++.|++|+++|++++++.+.+...|..+++.++..+.+.   .+||+.+.+..+..++.......
T Consensus       121 l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~  197 (392)
T PRK12382        121 ILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH---FGFAALALTTMVLPLLAWAFNGT  197 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHh
Confidence            999999888888888999999999999999999999999999999998776543   47998776654443333322222


Q ss_pred             ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHH
Q 021634          173 LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGIN  252 (310)
Q Consensus       173 ~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (310)
                      .||.++.   +++                                   +.+.++..+... ++... .    ........
T Consensus       198 ~~~~~~~---~~~-----------------------------------~~~~~~~~~~~~-~~~~~-~----~l~~~~~~  233 (392)
T PRK12382        198 VRKVPAH---AGE-----------------------------------RPSLWSVVGLIW-KPGLG-L----ALQGVGFA  233 (392)
T ss_pred             ccCCCCC---ccc-----------------------------------CchHHHHHHHHH-HhHHH-H----HHHHHHHh
Confidence            3332110   000                                   000111111101 11111 1    11112334


Q ss_pred             HHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          253 VIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       253 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      ....+.|.++++.|++.  .+.......++.+++.+..++  +.||+|+|+.+..+
T Consensus       234 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~--l~~r~g~~~~~~~~  285 (392)
T PRK12382        234 VIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGW--MPDRFGGVKVAIVS  285 (392)
T ss_pred             HHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHH--HHHhcCCCeehHHH
Confidence            45667778887777653  455566667778888899999  99999999887654

>TIGR00901 2A0125 AmpG-related permease

Probab=99.92  E-value=1.3e-23  Score=179.69  Aligned_cols=254  Identities=13%  Similarity=0.060  Sum_probs=179.2

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh-----CchhHH-HHHHHHHHHHHHHhhhh---hhHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-----GRKPSV-LMGGAAFLAGSALGGAA---VNVYMLIFG   90 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~~-~~~~~~~~~~~~~~~~~---~~~~~l~~~   90 (310)
                      |.+.+|+|+|.++.++..+. .+...+ .+++|+++||+     ||||.+ +.+.++..++....++.   .+.+.+...
T Consensus        12 ~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~   89 (356)
T TIGR00901        12 PYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGL   89 (356)
T ss_pred             HHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHH
Confidence            55677899999999999755 444444 99999999998     898874 56777777776666666   456667777


Q ss_pred             HHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCC-----CchhHHHHHhhHHHHHH
Q 021634           91 RLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG-----GWGWRVSLALAAVPASI  165 (310)
Q Consensus        91 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~wr~~~~~~~~~~~~  165 (310)
                      .++.+.+.+...+...+++.|++|+|+|+++.++...+..+|.++++.++..+....+     .++||..|++.++..++
T Consensus        90 ~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~  169 (356)
T TIGR00901        90 AFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILP  169 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHH
Confidence            7888888888888889999999999999999999999999999999999876654432     23499999998887777


Q ss_pred             HHHHhhc-ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHH
Q 021634          166 LTLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPF  244 (310)
Q Consensus       166 ~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (310)
                      ..+..++ .||+++..   +.+.++.                 .+          .+.++++.++++..++..... +..
T Consensus       170 ~~~~~~~~~~e~~~~~---~~~~~~~-----------------~~----------~~~~~~~~~~~~~~~~~~~~~-~~~  218 (356)
T TIGR00901       170 GLLVTLFLAKEPQEDA---SVPKPLT-----------------QA----------VLKPIREFFQRKNMIQALLLL-LLI  218 (356)
T ss_pred             HHHHHHHhccCCCccc---ccchhHH-----------------HH----------HHHHHHHHHHhcCchHHHHHH-HHH
Confidence            6655554 56643210   0000000                 00          011223333333222232222 222


Q ss_pred             HHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHH-hhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          245 FQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIE-CGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      +.....+.....+.|.++++.|+++++.+......+ +..+++.+++++  +.||+|+|+.++.+
T Consensus       219 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~--l~~r~g~~~~l~~~  281 (356)
T TIGR00901       219 VLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGI--IMQPLNILYALLLF  281 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHH
Confidence            233344556777889998889999999988887665 577899999999  99999998876654

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.92  E-value=1.6e-23  Score=181.89  Aligned_cols=238  Identities=18%  Similarity=0.127  Sum_probs=171.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh--------hhHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA--------VNVYMLIFGR   91 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--------~~~~~l~~~r   91 (310)
                      .++++++|.|+.+.+++.+++.+++.+++++.|+++||+|||+++..+.++..++.+.+.++        .+++.+++.|
T Consensus        40 ~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  119 (399)
T PRK05122         40 GYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGR  119 (399)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999888876655443        2567889999


Q ss_pred             HHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh
Q 021634           92 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  171 (310)
Q Consensus        92 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  171 (310)
                      ++.|++.+...+....++.|++|+++|++++++...+..+|..+++.++..+.+.   .+|++.+++..+..++..+...
T Consensus       120 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~  196 (399)
T PRK05122        120 LLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW---GGLAGLGLLIMLLALLGLLLAR  196 (399)
T ss_pred             HHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999899999999999999999999999999999999998776643   5799988776665544333332


Q ss_pred             cccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhH
Q 021634          172 FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGI  251 (310)
Q Consensus       172 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (310)
                      ..|++++.   +++                                   +.++++.+++.....  ...    ......+
T Consensus       197 ~~~~~~~~---~~~-----------------------------------~~~~~~~~~~~~~~~--~~~----~~~~~~~  232 (399)
T PRK05122        197 PRPAVPPV---KGE-----------------------------------RLPFRRVLGRVWPYG--MGL----ALASIGF  232 (399)
T ss_pred             cCCCCCCC---Ccc-----------------------------------chhHHHHHHHHHHHH--HHH----HHHHHHH
Confidence            23332110   000                                   000111111100011  111    1112223


Q ss_pred             HHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          252 NVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       252 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .....+.|.++++.|.  .+.+.......++.+++.+..++  +.||+++|+.+..+
T Consensus       233 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~--l~~r~~~~~~~~~~  285 (399)
T PRK05122        233 GTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGN--LINRLGGLRVAIVS  285 (399)
T ss_pred             HHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHH--HHHHhccHHHHHHH
Confidence            4455677777777666  34456666778888899999999  99999999887654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.92  E-value=3.8e-23  Score=175.99  Aligned_cols=224  Identities=25%  Similarity=0.386  Sum_probs=193.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +.+.++++.++++.++..+...++..+++++.|+++||+|||+.+..+..+..++.+...+.++++.+.+.|++.|++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~  102 (352)
T cd06174          23 PLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGG  102 (352)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccc
Confidence            45667779999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS  179 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~  179 (310)
                      ...+....++.|++|+++|++..++.+....+|..+++.++..+.+.   .+||+.+++.++..++..+...+++     
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----  174 (352)
T cd06174         103 ALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES---LGWRWLFLILAILGLLLALLLLFLL-----  174 (352)
T ss_pred             cccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            99999999999999999999999999999999999999998877654   3599999988887777665554442     


Q ss_pred             hHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 021634          180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP  259 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (310)
                                                                             +.++...+..+...........+.|
T Consensus       175 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  199 (352)
T cd06174         175 -------------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLP  199 (352)
T ss_pred             -------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence                                                                   1122333444444556677788899


Q ss_pred             HHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccch-hhhhc
Q 021634          260 LLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRK-LDIYT  308 (310)
Q Consensus       260 ~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~-~~~~~  308 (310)
                      .+.++. |.+..+.+.......++..++.++.++  +.||++||+ .+..+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~  248 (352)
T cd06174         200 LYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL--LSDRLGRRRLLLLIG  248 (352)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhHHHHHH
Confidence            999776 999999999999999999999999999  999999998 66544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.92  E-value=2e-23  Score=180.90  Aligned_cols=240  Identities=15%  Similarity=0.215  Sum_probs=182.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.+++|.|+.+.++..+.+.++..+++++.|+++||+|||+++..+.++..++.+.+.++++++.+++.|++.|++.+
T Consensus        32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  111 (394)
T PRK11652         32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTG  111 (394)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhh
Confidence            66789999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHH-hhcccCCch
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG-ALFLPETPN  178 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~~es~~  178 (310)
                      ...+....+..|.+++++|+++.+....+..++..++|.+++.+.+.   .+||+.|++.++..++..+. .++.||+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        112 VGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL---FGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            77777788889999999999999999999999999999998876543   47999999887766655443 455777643


Q ss_pred             hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      ..   ++ .++.                              ...+++.++++..+....    ..+........+..+.
T Consensus       189 ~~---~~-~~~~------------------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  230 (394)
T PRK11652        189 AD---AR-RTRV------------------------------LASYRTLLSNRRFNCYLL----MLIGTLAGIAVFEACS  230 (394)
T ss_pred             cc---cc-hhHH------------------------------HHHHHHHHcChHHHHHHH----HHHHHHHHHHHHHHhC
Confidence            11   00 0000                              011222333222222121    1222223334455566


Q ss_pred             HHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccc
Q 021634          259 PLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  302 (310)
Q Consensus       259 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r  302 (310)
                      +.++++ .|.++.+.+.......++.+++..+.++  +.||.+++
T Consensus       231 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~--l~~~~~~~  273 (394)
T PRK11652        231 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR--PNKRFSTL  273 (394)
T ss_pred             hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            777766 6999999998888888888888888888  88888743

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.91  E-value=2.4e-23  Score=183.22  Aligned_cols=259  Identities=13%  Similarity=0.090  Sum_probs=181.9

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHhhcc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIF-GRLLLGVGV   98 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~   98 (310)
                      +.+.+++|.|.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..+++++++++++++.+++ .|++.|++.
T Consensus        43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~  122 (455)
T TIGR00892        43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGL  122 (455)
T ss_pred             HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc
Confidence            5678999999999999999999999999999999999999999999999999999999999999998865 579999998


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcc-cCCc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL-PETP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-~es~  177 (310)
                      +...+....++.++++ ++|+++.++.+.+..+|..+++.+++.+.+.   ++||+.|++.+++.++..+..+++ ++.+
T Consensus       123 ~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~---~gwr~~f~~~~~~~~~~~v~~~~~~~~~~  198 (455)
T TIGR00892       123 AFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES---FGWRGSFLILGGLLLHCCVCGALMRPVGP  198 (455)
T ss_pred             hhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            8776777788889995 7899999999999999999999987766543   479999999888777665554443 3222


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      ....  .+ .+ .++   ...++++.++ . .. ....++..+..+ .+.+++    +.++......+.....+.....+
T Consensus       199 ~~~~--~~-~~-~~~---~~~~~~~~~~-~-~~-~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~  263 (455)
T TIGR00892       199 SQRV--SK-SK-SKE---GLPPDGSTKK-L-SK-KSTAEKINRFLD-FSLFTH----RGFLVYLSGNVIMFLGFFAPIIF  263 (455)
T ss_pred             cccc--cc-cc-ccc---cCCCCCcccc-c-cc-cchhhhhhhhcc-hHHhcC----chHHHHHHHHHHHHHHccchHHH
Confidence            1100  00 00 000   0000000000 0 00 000000000000 122322    22333333333333444556678


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHh
Q 021634          258 APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRV  299 (310)
Q Consensus       258 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~  299 (310)
                      +|.|.++.|+++.+++...++.+++.+++.+..++  +.||.
T Consensus       264 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~--l~d~~  303 (455)
T TIGR00892       264 LVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGL--IAGLK  303 (455)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--Hhccc
Confidence            88888888999999999999999999999999999  89873

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.91  E-value=1.2e-23  Score=174.62  Aligned_cols=275  Identities=20%  Similarity=0.241  Sum_probs=192.1

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhh-------hHHHHHHHHHHHhhccc
Q 021634           27 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV-------NVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~r~l~G~~~~   99 (310)
                      ++++.-.+.+..+..+|.++||+++|++.||+|||+++...+++.++++++++++.       -.+.+...|++.|+|.|
T Consensus        80 ~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIG  159 (538)
T KOG0252|consen   80 HYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIG  159 (538)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhcccc
Confidence            45677789999999999999999999999999999999999999999999877652       24567778999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc----ccCCC--------chhHHHHHhhHHHHHHHH
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE----QIKGG--------WGWRVSLALAAVPASILT  167 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~--------~~wr~~~~~~~~~~~~~~  167 (310)
                      +-+|...+..+|....++||...+.+.+....|.+.+.+++..+.    ...+.        .-||..+.+..++.+.++
T Consensus       160 GDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l  239 (538)
T KOG0252|consen  160 GDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL  239 (538)
T ss_pred             CCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888777666666666555554333    22111        259999999999999888


Q ss_pred             HHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhh-hccccchh--HHHHHHHHHH
Q 021634          168 LGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKK-IIQRKYRP--QLLMAMAIPF  244 (310)
Q Consensus       168 ~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~  244 (310)
                      ...+.+||++++....+++.+++.+..++...   .  +.++..+. +...+.+.+... ..+...++  +.++.....+
T Consensus       240 y~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~---~--~~~~~~~~-~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~W  313 (538)
T KOG0252|consen  240 YFRLKMPETARYTALVSKKLKQAAGDMKKVLS---V--DIEAESTA-ESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTW  313 (538)
T ss_pred             HhhhcCCcchhHHHHhhcCHhhhhhccccccc---c--ccchhhcc-ccCCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            88888999998875444444444322111111   1  11111111 111111112222 22222222  5566677777


Q ss_pred             HHHhhhHHHHHHhHHHHHHHcCCCchhHHH--------HHHH-HHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          245 FQQVTGINVIAFYAPLLFRTIGLGRLKVCQ--------LSKW-IECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~-~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      +..-.+++..+.+...+++..|+.+.+...        ...+ ...+.++|..+..+  ++|++|||++.+-|+
T Consensus       314 FllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~--~id~iGRk~iq~~GF  385 (538)
T KOG0252|consen  314 FLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVY--FIDIIGRKYIQLMGF  385 (538)
T ss_pred             HhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEE--EeehhhhHHHHHhhH
Confidence            877788889999999999988876654333        2222 23334446666667  899999999988765

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.90  E-value=2.9e-22  Score=173.65  Aligned_cols=242  Identities=13%  Similarity=0.129  Sum_probs=175.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +++++++|+|+.+.++..+...+...+.+++.|+++||+|||+++..+.++..++.+.+.++++++.+.+.|++.|++.+
T Consensus        35 ~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~  114 (400)
T PRK11646         35 IRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGT  114 (400)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCch
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPN  178 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~  178 (310)
                      ...+...+++.|++|+++|+++.++......+|..++|.+++.+..    ++||+.|++.++..++..+.. ++.||.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~----~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~  190 (400)
T PRK11646        115 LFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ----YDFRLVCATGAVLFVLAAAFNAWLLPAYKL  190 (400)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            8888888999999999999999999999999999999999887763    479999998777766554433 44554211


Q ss_pred             hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                          ++. .++                              .+.++++.++++....    ..+..+...........+.
T Consensus       191 ----~~~-~~~------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  231 (400)
T PRK11646        191 ----STV-RTP------------------------------VREGMTRVLRDKRFVT----YVLTLTGYYMLAVQVMLML  231 (400)
T ss_pred             ----ccc-chh------------------------------hHHHHHHHHcCchHHH----HHHHHHHHHHHHHHHHHhh
Confidence                000 000                              0011223333322111    1111111111222345678


Q ss_pred             HHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHH-Hhccchhhh
Q 021634          259 PLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMN-RVRWRKLDI  306 (310)
Q Consensus       259 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d-~~g~r~~~~  306 (310)
                      |.++++.+.++.+.+.+.....+....+....+.  +.| |++.++.+.
T Consensus       232 p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~  278 (400)
T PRK11646        232 PIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIAR--WSEKRFRLEHRLM  278 (400)
T ss_pred             hhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchhHHHH
Confidence            8988887667788888877776666555544454  554 455454443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.90  E-value=3.1e-22  Score=174.23  Aligned_cols=247  Identities=14%  Similarity=0.061  Sum_probs=171.3

Q ss_pred             cccccccccchhH-----HHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQL-----LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~   94 (310)
                      |.+.+++|.+..+     .+++.++..++..+++++.|+++||+|||+.+..+.++..++.++..++++++.+++.|++.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (408)
T PRK09874         38 PLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALL  117 (408)
T ss_pred             HHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4455667777544     48889999999999999999999999999999999999999999888899999999999999


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcc
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFL  173 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~  173 (310)
                      |++.+ ..+....++.|++|+++|+++.++...+..+|..+++.+++.+.+.   .+||+.+++.++..++..+.. ++.
T Consensus       118 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  193 (408)
T PRK09874        118 GLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS---YGLRPVFFITASVLFLCFLVTLFCI  193 (408)
T ss_pred             HHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99754 4567778889999999999999999999999999999998876543   469999998887776665544 446


Q ss_pred             cCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHH
Q 021634          174 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV  253 (310)
Q Consensus       174 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (310)
                      ||+++...   + .++ .              +.+              +..+.++++.   .........+........
T Consensus       194 ~~~~~~~~---~-~~~-~--------------~~~--------------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  237 (408)
T PRK09874        194 RENFQPVS---K-KEM-L--------------HMR--------------EVVTSLKNPK---LVLSLFVTTLIIQVATGS  237 (408)
T ss_pred             ccCccccc---c-hhh-h--------------HHH--------------HHHHhCcCCc---hHHHHHHHHHHHHHHHHH
Confidence            66432110   0 000 0              000              0011111111   111111111111122334


Q ss_pred             HHHhHHHHHHHcCCCchh----HHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          254 IAFYAPLLFRTIGLGRLK----VCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       254 ~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      ...+.+.+.++.+.+..+    .+....+..++.+++.+..++  +.||++||+.+..+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~--l~dr~g~~~~~~~~  294 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGK--LGDRIGPEKILITA  294 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhccccchhHHHH
Confidence            455667777654333222    344555667778888888888  99999999987654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.90  E-value=1e-22  Score=177.79  Aligned_cols=249  Identities=12%  Similarity=0.040  Sum_probs=183.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-----AVNVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~   94 (310)
                      |.+.++++.++.+.+++.+...++..+++++.|+++||+|||+++..+..+..++.+..+.     .++++.+++.|++.
T Consensus        41 ~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  120 (417)
T PRK10489         41 PVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWD  120 (417)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            5556677889999999999999999999999999999999999998888777776654432     46788888999999


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhccc
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP  174 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~  174 (310)
                      |++.+...+....++.|+.|+++|+++.++......+|..+++.+++.+...   .+|++.+++.++..++..+..+.+|
T Consensus       121 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~l~  197 (417)
T PRK10489        121 GFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA---GGVAWNYGLAAAGTFITLLPLLRLP  197 (417)
T ss_pred             HHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHhCC
Confidence            9998887888888999999999999999999999999999999998876643   3699999887777766666666677


Q ss_pred             CCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHH
Q 021634          175 ETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVI  254 (310)
Q Consensus       175 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      |+++...++++   +                 .++.          ...++..++++..+....    ..+... .....
T Consensus       198 ~~~~~~~~~~~---~-----------------~~~~----------~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~  242 (417)
T PRK10489        198 ALPPPPQPREH---P-----------------LRSL----------LAGFRFLLASPVVGGIAL----LGGLLT-MASAV  242 (417)
T ss_pred             CCCCCCccccc---c-----------------hHHH----------HHHHHHHHcChHHHHHHH----HHHHHH-HHHhH
Confidence            76432100000   0                 0000          011222233322222211    111111 12445


Q ss_pred             HHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          255 AFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       255 ~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      ..+.|.+.++ .|.++.+.+.+.....++.+++.++.++  +.||.++++.+..+
T Consensus       243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~--l~~~~~~~~~l~~~  295 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGW--LAHSARPGLLMLLS  295 (417)
T ss_pred             HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHH--hhhccCcchHHHHH
Confidence            6778888877 6999999999999999999999999999  89987776665543

>PRK10054 putative transporter; Provisional

Probab=99.90  E-value=1.4e-22  Score=175.24  Aligned_cols=245  Identities=11%  Similarity=0.007  Sum_probs=176.2

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +++++++|+++.+.+++.+.+.++..+++++.|+++||+|||+++.++.++..++.++.+++++++.++++|.+.|.+.+
T Consensus        32 ~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  111 (395)
T PRK10054         32 IYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYS  111 (395)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            56778899999999999999999999999999999999999999999999999999989999999999989999888777


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCch
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPN  178 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~  178 (310)
                      ...+....+..|..|+++|+++.++.....++|..++|.+++.+..    .+|+..|++.++..++..+.. +++||+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~----~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~  187 (395)
T PRK10054        112 VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM----QSINLPFWLAAICSAFPLVFIQIWVQRSEK  187 (395)
T ss_pred             HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            7778888999999999999999999999999999999999887763    379999998877776655444 33555432


Q ss_pred             hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      ..   ++ +++  +                            ..+.++.++++..........+..+    .......+.
T Consensus       188 ~~---~~-~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~  229 (395)
T PRK10054        188 AI---AT-ETG--S----------------------------VWSPSVLLQDKALLWFTCSGFLASF----VSGAFASCI  229 (395)
T ss_pred             cc---cc-chh--h----------------------------hhhhhhhccCceehHHHHHHHHHHH----HHHHhhhhH
Confidence            10   00 000  0                            0001223333222222221111111    122233344


Q ss_pred             HHHH---HHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          259 PLLF---RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       259 ~~~~---~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      +.+.   ++.+.+....+.......+.........+.  +.||.++|+.+..+
T Consensus       230 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~l~~~  280 (395)
T PRK10054        230 SQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGR--RLNAANIRPLMTAG  280 (395)
T ss_pred             HHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHH--HHccCCchhHHHHH
Confidence            4444   334556666677777766666666677777  89999999887654

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.90  E-value=1.2e-22  Score=172.41  Aligned_cols=263  Identities=12%  Similarity=0.100  Sum_probs=179.1

Q ss_pred             cccccccccchhH-HHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           20 TKISNYCKFDSQL-LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        20 ~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      |++.+|+|+|++| .+.+.++++.++++++++.|+++||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|++.
T Consensus        50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaE  129 (511)
T TIGR00806        50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTM  129 (511)
T ss_pred             HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999 999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHH---HhhHHHHHHHHHHhhcccC
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSL---ALAAVPASILTLGALFLPE  175 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~---~~~~~~~~~~~~~~~~~~e  175 (310)
                      |+.. ....++..|+|+++|+++.++...+..+|.+++++++..+.    .+|||+..   ++......+.+++.+++|.
T Consensus       130 A~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~----s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~  204 (511)
T TIGR00806       130 AARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV----TLGWISYSTLNIISLVFMTFSVFLALFLKR  204 (511)
T ss_pred             HHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999 99999999999999999999999999999999999988743    24677644   4444444555666788886


Q ss_pred             CchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhh---ccccchhHHHHHHHHHHHHHhhhHH
Q 021634          176 TPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKI---IQRKYRPQLLMAMAIPFFQQVTGIN  252 (310)
Q Consensus       176 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  252 (310)
                      .++....++++..+ .....+.....+...  .+  .....+.......+.+   ++..+.++.++...+.+....++++
T Consensus       205 ~~~sl~f~~~~~~~-~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~  279 (511)
T TIGR00806       205 PKRSLFFNRLEDVR-GALPCELDQMVPGPG--GK--LEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYY  279 (511)
T ss_pred             Cchhhhhccccccc-cccccccccCCCCCc--cc--cchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHH
Confidence            55544333221100 000000000000000  00  0000000000111111   1222333444444444455555666


Q ss_pred             HHHHhHHHHHHHcCC-CchhHHHHHHHHHhhhhhhhhHHHH
Q 021634          253 VIAFYAPLLFRTIGL-GRLKVCQLSKWIECGGSIGFGRNMW  292 (310)
Q Consensus       253 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~g~~~~~~  292 (310)
                      -+..|....-++..- .+...|..-++..+.+.++.+..|+
T Consensus       280 qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~  320 (511)
T TIGR00806       280 LITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGF  320 (511)
T ss_pred             HHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHh
Confidence            677777666666622 2224555666666667777777777

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.90  E-value=1.1e-21  Score=169.76  Aligned_cols=243  Identities=15%  Similarity=0.073  Sum_probs=164.9

Q ss_pred             cccccccccchhHHHHHHHHHHH-HHHHHHhhhHHHHhhhCchhHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYV-AGLVASFVASSVTRAFGRKPSV-LMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   97 (310)
                      .++.+|+|.|+++.+++.+...+ +..++.++.++ +||+|||+.+ ..+.+...++..+.+++++++.+++.+.+.|..
T Consensus        40 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  118 (393)
T PRK15011         40 IFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSF  118 (393)
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            56788999999999999876655 55566655565 9999999875 455666667777788899999877665555544


Q ss_pred             ccccccchhhhhhhcccccch--hhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hccc
Q 021634           98 VGFANQSVPLYLSEMAPARYR--GAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLP  174 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~  174 (310)
                      .+...+....+..|+.++++|  +...+..+.+.++|..++|++++.+.+.   .|||..|++.++..++..+.. +++|
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~---~gw~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        119 GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG---FSFTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHhhcC
Confidence            556677777888888776655  3445788889999999999999887653   479999999887776665544 4478


Q ss_pred             CCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHH
Q 021634          175 ETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVI  254 (310)
Q Consensus       175 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      |+++...   +  ++ .                         +   ....+   ++ . +..+...... .........+
T Consensus       196 ~~~~~~~---~--~~-~-------------------------~---~~~~~---~~-~-~~~~~~~~~~-~~~~~~~~~~  235 (393)
T PRK15011        196 SMRKELP---L--AT-G-------------------------T---LEAPR---RN-R-RDTLLLFVIC-TLMWGTNSLY  235 (393)
T ss_pred             ccCCCCc---c--cc-c-------------------------c---ccccc---cc-c-ccHHHHHHHH-HHHHHHHHHH
Confidence            7642110   0  00 0                         0   00000   00 0 0111111111 1122233445


Q ss_pred             HHhHHHHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          255 AFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       255 ~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      ..+.|.+++ +.|+++.+++.+.....+..+++.++.++  ++||++||+.+..+
T Consensus       236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~--l~dr~g~~~~~~~~  288 (393)
T PRK15011        236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGY--FAKRLGKRFLMRVA  288 (393)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhChHHHHHHH
Confidence            667888885 46999999888888777888889999999  99999999877654

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.89  E-value=1.9e-21  Score=167.70  Aligned_cols=248  Identities=8%  Similarity=0.015  Sum_probs=173.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHH-HHHHHH-HHhhhhhhHHHHHHHHHHHhhc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA-AFLAGS-ALGGAAVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~-~~~~~~-~~~~~~~~~~~l~~~r~l~G~~   97 (310)
                      |.+.+|+|.|..+++++.+++.+...++++++|+++||+|||........ ...+.. ..+..+++++.+++.|.++|.+
T Consensus        28 ~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~  107 (382)
T TIGR00902        28 PAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALF  107 (382)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            45567889999999999999999999999999999999998543322211 111122 2344678999999999999998


Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCc
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETP  177 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~  177 (310)
                      .+...+...++..|+  +++|+++.+....+.++|.+++|++++.+.+.   +|||..|++.++..++..+ .+.++|++
T Consensus       108 ~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~---~g~~~~f~~~~~~~~~~~~-~~~~~~~~  181 (382)
T TIGR00902       108 FSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM---FDEQNILAILTAGLAFMLI-GFLIKPTI  181 (382)
T ss_pred             HccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHH-HHHcCCCC
Confidence            888888888877654  47789999999999999999999998877654   5799998886655333332 33344432


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      +..  +++ .++                           +.+...+.++.+++    +.++...+..+...........+
T Consensus       182 ~~~--~~~-~~~---------------------------~~~~~~~~~~~l~~----~~~~~~l~~~~l~~~~~~~~~~~  227 (382)
T TIGR00902       182 PPK--DAI-PED---------------------------ESQGDSAFIALLKN----PMNLRFLAAVCLIQGAHAAYYGF  227 (382)
T ss_pred             CCC--ccc-ccc---------------------------ccccchhHHHHHcC----hHHHHHHHHHHHHHHHHHHHHHH
Confidence            100  000 000                           00001122344433    22333333333333455667778


Q ss_pred             HHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          258 APLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       258 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      .|.++++.|.++.+.+.+.....++.+++....+.  +.||+|+|+++.++.
T Consensus       228 ~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~--l~~r~g~~~~l~~~~  277 (382)
T TIGR00902       228 SAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNK--LFQNCSARDLLLISA  277 (382)
T ss_pred             HHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHH--HHhhCCHHHHHHHHH
Confidence            89899889999999999999989999999999998  999999999887654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.89  E-value=4.1e-21  Score=170.28  Aligned_cols=248  Identities=15%  Similarity=0.134  Sum_probs=174.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh-----CchhH-HHHHHHHHHHHHHHhhhh---hhHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-----GRKPS-VLMGGAAFLAGSALGGAA---VNVYMLIFG   90 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~~~~~l~~~   90 (310)
                      |...++.|.|.++++.+ +.....+ ++++++|+++||+     |||+. +..+.+...++....++.   ++++.+.+.
T Consensus        36 ~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~  113 (491)
T PRK11010         36 QAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAAL  113 (491)
T ss_pred             HHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence            33455668899999887 3333333 6899999999999     99885 557777777776666664   468888889


Q ss_pred             HHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh
Q 021634           91 RLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus        91 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                      +++.|++.+...+...++..|++|+++|+++.++...+..+|.++++.++..+.+.  ..|||..|++.++..++..+..
T Consensus       114 ~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~--~~GWr~~f~i~a~l~ll~~l~~  191 (491)
T PRK11010        114 AVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADR--YLGWQGMYWLMAALLIPCIIAT  191 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHH
Confidence            99999999988899999999999999999999999999999999999887776641  2479999999888877776666


Q ss_pred             hcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhh
Q 021634          171 LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG  250 (310)
Q Consensus       171 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (310)
                      +++||+++..  +++  ++.+                          ++...++++.++++..+.......    .....
T Consensus       192 ~~~~e~~~~~--~~~--~~~~--------------------------~~~~~~l~~~~~~~~~~~~ll~~~----l~~~~  237 (491)
T PRK11010        192 LLAPEPTDTI--PVP--KTLE--------------------------QAVVAPLRDFFGRNNAWLILLLIV----LYKLG  237 (491)
T ss_pred             HhcCCCcccc--ccc--cchh--------------------------hhHHHHHHHHHcCcCHHHHHHHHH----HHHHH
Confidence            6678764321  000  0000                          000112344444332222222111    11122


Q ss_pred             HHHHHHhHHHHH-HHcCCCchhHHHHHH-HHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          251 INVIAFYAPLLF-RTIGLGRLKVCQLSK-WIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       251 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~-~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      ......+.+.++ ++.|++..+.+.... ...++.++|.+++++  ++||+|+|+.+.+
T Consensus       238 ~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~--L~dr~g~~~~l~i  294 (491)
T PRK11010        238 DAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGI--LMQRLSLFRALMI  294 (491)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHH
Confidence            233344556665 567999999999874 556799999999999  9999998886654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.88  E-value=1.9e-21  Score=189.71  Aligned_cols=256  Identities=13%  Similarity=-0.054  Sum_probs=175.0

Q ss_pred             cccccccc--hhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHhh
Q 021634           22 ISNYCKFD--SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GAAVNVYMLIFGRLLLGV   96 (310)
Q Consensus        22 i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~   96 (310)
                      +..+++.+  ....+++.+++.+++.++++++|+++||+|||++++.+.++.+++.++.   ..+++++.++++|++.|+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~  115 (1146)
T PRK08633         36 LIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGA  115 (1146)
T ss_pred             HHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            33344444  3457999999999999999999999999999999999887766655543   345789999999999999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC------CCchhHHHHHhhHHH-HHHHHHH
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK------GGWGWRVSLALAAVP-ASILTLG  169 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~wr~~~~~~~~~-~~~~~~~  169 (310)
                      +.+...+...+++.|++|+++|++++++...+..+|.++++.+++++....      +..+|++.+.+..+. .++.++.
T Consensus       116 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (1146)
T PRK08633        116 QSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIF  195 (1146)
T ss_pred             HHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998776530      011344444333333 3333344


Q ss_pred             hhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhh
Q 021634          170 ALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVT  249 (310)
Q Consensus       170 ~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (310)
                      .+.+||+++....+..  ++.         ..    ...          .....++..++++..+.    ..+..+....
T Consensus       196 ~~~~~~~~~~~~~~~~--~~~---------~~----~~~----------~~~~~~~~l~~~~~~~~----~~~~~~~~~~  246 (1146)
T PRK08633        196 AYRLPKVPAAAPEVFD--KKK---------YL----FPK----------LLWRNLKLLRSDRVLWL----AIIGLSYFWF  246 (1146)
T ss_pred             HhcCcCCCCCCccccc--ccc---------cc----cHH----------HHHHHHHHHhcCcHHHH----HHHHHHHHHH
Confidence            4557877643211100  000         00    000          00112233333322222    2222222222


Q ss_pred             hHHHHHHhHHHHHH-HcCCCch-hHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          250 GINVIAFYAPLLFR-TIGLGRL-KVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       250 ~~~~~~~~~~~~~~-~~g~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .......+.|.+++ ..|++.. ..+++.+...++.+++.++.++  +.||+++++.+.++
T Consensus       247 ~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~--l~~r~~~~~~~~~~  305 (1146)
T PRK08633        247 ISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGR--LSGRHIELGLVPLG  305 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH--HhCCceEccchhHH
Confidence            33445667777775 4699988 9999999999999999999999  99999988776544

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.88  E-value=9.1e-21  Score=164.63  Aligned_cols=249  Identities=14%  Similarity=0.112  Sum_probs=173.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh-----Cchh-HHHHHHHHHHHHHHHhhhh---hhHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-----GRKP-SVLMGGAAFLAGSALGGAA---VNVYMLIFG   90 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-----Grr~-~~~~~~~~~~~~~~~~~~~---~~~~~l~~~   90 (310)
                      |..-++.|+|.+++|++..+...  .+.++++|+++||+     |||| .+..+.++.+++....++.   .+++.+.+.
T Consensus        23 ~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~  100 (402)
T PRK11902         23 QAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGL  100 (402)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHH
Confidence            33344569999999999777665  68999999999999     8775 6777788887777776665   457777778


Q ss_pred             HHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh
Q 021634           91 RLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus        91 r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                      .++.+.+.+...+...+++.|++|+++|+++.++...+..+|..+++.++..+.+.  ..+||..|++.++..++..+..
T Consensus       101 ~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~--~~gw~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902        101 AVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR--VLGWGNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc--ccCHHHHHHHHHHHHHHHHHHH
Confidence            88888888888889999999999999999999999999999999998887766542  1379999999888777666655


Q ss_pred             hcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhh
Q 021634          171 LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG  250 (310)
Q Consensus       171 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (310)
                      ++.||+++...   + .++.+                ++          ...++++.++++..+..+....+......  
T Consensus       179 ~~~~e~~~~~~---~-~~~~~----------------~~----------~~~~~~~l~~~~~~~~~l~~~~l~~~~~~--  226 (402)
T PRK11902        179 LWAPEPEVPAR---P-PRSLG----------------EA----------VVGPLRDFFSRRGAWALLLLIVLYKLGDA--  226 (402)
T ss_pred             HhcCCCccccc---c-cchhH----------------HH----------HHHHHHHHHhCcCHHHHHHHHHHHHhHHH--
Confidence            66777643210   0 00000                00          01123444545443333332222222111  


Q ss_pred             HHHHHHhHHHHHHHcCCCchhHHHHHHHHH-hhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          251 INVIAFYAPLLFRTIGLGRLKVCQLSKWIE-CGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       251 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                       .......+.+.++.|+++++.+......+ ++.+++.+++++  +.||+++|+.+..
T Consensus       227 -~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~--l~~r~g~~~~l~~  281 (402)
T PRK11902        227 -FAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGT--LMVRLGLYRSLML  281 (402)
T ss_pred             -HHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHhHHHHHHH
Confidence             11122334444667999999998876654 468899999999  9999998887654

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.88  E-value=4.1e-21  Score=165.66  Aligned_cols=245  Identities=9%  Similarity=0.016  Sum_probs=170.6

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCch----hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRK----PSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGV   96 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~   96 (310)
                      ...+|+|.|..++|++.+++.++..++++++|+++||+|||    +.+.++..+.  .......+++++.+++.|++.|+
T Consensus        29 ~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~  106 (382)
T PRK11128         29 VWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNL  106 (382)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHH
Confidence            44577899999999999999999999999999999999994    3333222221  22233446889999999999999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCC
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPET  176 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es  176 (310)
                      +.+...+...++..++  .++|+++.+......++|..++|++++.+.+.   +|||..|++.++..++..+..++.||.
T Consensus       107 ~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~  181 (382)
T PRK11128        107 FFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW---FGEQAILWILTAGVASMLLGQLLRPTI  181 (382)
T ss_pred             HHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH---cChhHHHHHHHHHHHHHHHHHHccCCC
Confidence            9888888877777776  45688888888888999999999999887653   479999988776555444444445543


Q ss_pred             chhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHH
Q 021634          177 PNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAF  256 (310)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (310)
                      ++.    ++ .++                          ++++...++++.++++....    ..+..+...........
T Consensus       182 ~~~----~~-~~~--------------------------~~~~~~~~~~~i~~~~~~~~----~~~~~~l~~~~~~~~~~  226 (382)
T PRK11128        182 MPQ----GE-SRQ--------------------------QESAGWPAWKALLKEPTVWR----FLLCVSLLQGSHAAYYG  226 (382)
T ss_pred             CCc----cc-ccc--------------------------ccccccchHHHHHcChhHHH----HHHHHHHHHHHhHhHHH
Confidence            210    00 000                          00001123445554432222    22222222223344566


Q ss_pred             hHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          257 YAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       257 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      +.|.+.++.|.++.+.+.+.....+..++..+..++  +.||+++|+.+..++
T Consensus       227 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~--l~~r~~~~~~l~~~~  277 (382)
T PRK11128        227 FSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNR--LFRRWSARDLLLLSA  277 (382)
T ss_pred             HHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHH--HHHHCCHHHHHHHHH
Confidence            778888888999999999999888888888899999  999999999876553

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.88  E-value=1.2e-21  Score=159.35  Aligned_cols=153  Identities=20%  Similarity=0.208  Sum_probs=126.0

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccc
Q 021634           25 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  104 (310)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~  104 (310)
                      +.+.+..-.|.+.+.+.+++.+.++.+|.++||+|||+++++|.+..++...+.+.++|+..++++|++.|+.-| ...+
T Consensus        62 ~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v  140 (451)
T KOG2615|consen   62 PDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSV  140 (451)
T ss_pred             cccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHH
Confidence            334566778999999999999999999999999999999999999999999999999999777788999999865 5677


Q ss_pred             hhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC---CCchhHHHHHhhHHHHHH-HHHHhhcccCCch
Q 021634          105 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK---GGWGWRVSLALAAVPASI-LTLGALFLPETPN  178 (310)
Q Consensus       105 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~wr~~~~~~~~~~~~-~~~~~~~~~es~~  178 (310)
                      ..++++|..++|+|+++++.+...+++|.++||.+++++.+..   +.+.+-.+.++..+.... .....+++||+-+
T Consensus       141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~  218 (451)
T KOG2615|consen  141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP  218 (451)
T ss_pred             HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            8899999999999999999999999999999999999998722   222232323334444433 4455677999843

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.87  E-value=1.8e-20  Score=162.47  Aligned_cols=252  Identities=12%  Similarity=-0.005  Sum_probs=162.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHh---hhh-----hhHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GAA-----VNVYMLIFGR   91 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-----~~~~~l~~~r   91 (310)
                      .++.+++|.++.+.+++.++..++..+++++.|+++||+|||+.++.+.....++....   .+.     +......+.+
T Consensus        27 ~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (396)
T TIGR00882        27 IWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGG  106 (396)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            45667789999999999999999999999999999999999999988766665543322   111     1233455678


Q ss_pred             HHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh
Q 021634           92 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  171 (310)
Q Consensus        92 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  171 (310)
                      ++.|++.+...+....+..|..+  +++...+......++|..+++.+++.+.+    .+||..|++.++..++..+..+
T Consensus       107 ~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       107 LYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS----IDPQIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             HHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc----cCchHHHHHHHHHHHHHHHHHH
Confidence            88888888777777777666432  34456677777778899999998876653    4799999998887777665554


Q ss_pred             c-ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhh
Q 021634          172 F-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG  250 (310)
Q Consensus       172 ~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (310)
                      + .||+|++.        +.++.    .+              .++++.+..+.++.++++.....    .+..+.....
T Consensus       181 ~~~~~~~~~~--------~~~~~----~~--------------~~~~~~~~~~~~~~l~~~~~~~~----~l~~~~~~~~  230 (396)
T TIGR00882       181 FAKPKAPSSA--------TVANA----LG--------------ANASAFSLKLALELFRQRKFWMF----VLYVVGVACV  230 (396)
T ss_pred             HhCCCCchhh--------hhhcc----cc--------------cccCCCCHHHHHHHHcCCcHHHH----HHHHHHHHHH
Confidence            4 34433210        00000    00              00000111233444444322221    1122222223


Q ss_pred             HHHHHHhHHHHHHHc----CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          251 INVIAFYAPLLFRTI----GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       251 ~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      +.....+.+.++++.    +.+....+...+...+...++....++  +.||+|+|+.++++.
T Consensus       231 ~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~--l~~r~g~~~~l~~~~  291 (396)
T TIGR00882       231 YDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPL--IINRIGAKNALLIAG  291 (396)
T ss_pred             HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccchhHHHHH
Confidence            334444566666543    445566788888888888888899998  999999999877653

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.87  E-value=9.7e-21  Score=184.45  Aligned_cols=248  Identities=14%  Similarity=0.007  Sum_probs=174.6

Q ss_pred             cccccccch-hHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHH---HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhc
Q 021634           22 ISNYCKFDS-QLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLM---GGAAFLAGSALGGAAVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        22 i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   97 (310)
                      +..+.+.+. ...++..+++.+.+.+.++++|+++||+|||+++..   +.+......+.....++++.++++|+++|++
T Consensus        42 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~  121 (1140)
T PRK06814         42 LSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIH  121 (1140)
T ss_pred             hccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            444444433 446888889999999999999999999999997533   2222233333333458999999999999999


Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCc
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETP  177 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~  177 (310)
                      .+...+...+++.|++|+++|++++++.+++..+|.+++|.+++++...   .+|++.|+..++..++.+++.+++|+++
T Consensus       122 ~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        122 SALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS---GNFVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             HHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            9999999999999999999999999999999999999999999988764   4699998666666666666666677654


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHh
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFY  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (310)
                      +.......  +..               ..++.          ...++...+++    .++...+..+........+..+
T Consensus       199 ~~~~~~~~--~~~---------------~~~~~----------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  247 (1140)
T PRK06814        199 NAAPDLKI--DRN---------------IIRST----------ITLLKYAKADK----RIWLAILGISWFWLVGAVVLSQ  247 (1140)
T ss_pred             CCCCCCee--ccc---------------hHHHH----------HHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHH
Confidence            21100000  000               00000          01223333332    2333333333333334556678


Q ss_pred             HHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhh
Q 021634          258 APLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLD  305 (310)
Q Consensus       258 ~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~  305 (310)
                      .|.|+++ .|.++...+.+.+...++.++|.+..++  +.++..+++.+
T Consensus       248 ~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~--l~~~~~~~~~~  294 (1140)
T PRK06814        248 LPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASK--LSEGRITLLYV  294 (1140)
T ss_pred             hHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HhCCceeeeee
Confidence            8999865 5999999999999999999999999999  88877666543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.86  E-value=1.6e-20  Score=164.99  Aligned_cols=253  Identities=12%  Similarity=0.125  Sum_probs=170.8

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhh----hCchh-HHHHHHHHHHHHHHHhhhhhh------HHHH
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA----FGRKP-SVLMGGAAFLAGSALGGAAVN------VYML   87 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~l   87 (310)
                      .+.+.+++|+++.+.+++.++..+..++..++.|+++||    +|||| .++.+.....++.+++...++      .+.+
T Consensus        23 ~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  102 (437)
T TIGR00792        23 LFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYA  102 (437)
T ss_pred             HHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence            356778899999999999999999999999999999998    68744 566787888877777766543      3456


Q ss_pred             HHHHHHHhhcccccccchhhhhhhcc-cccchhhhhhHHHHHHHHHHHHHHHHHhhhccc----CCCchhHHHHHhhHHH
Q 021634           88 IFGRLLLGVGVGFANQSVPLYLSEMA-PARYRGAINNGFQFSIGIGALAANFINYGTEQI----KGGWGWRVSLALAAVP  162 (310)
Q Consensus        88 ~~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~wr~~~~~~~~~  162 (310)
                      .+.+++.+++.+.......++..|.. ++++|++..++.+.+..+|..+++.+...+...    .+..+||+.+.+.+++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l  182 (437)
T TIGR00792       103 YITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALI  182 (437)
T ss_pred             HHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHH
Confidence            66788888888877777788888887 468899999998888888877666554333221    2345899999988888


Q ss_pred             HHHHHHHh-hcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHH
Q 021634          163 ASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMA  241 (310)
Q Consensus       163 ~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (310)
                      .++..+.. ++.||+++..    + .++                         +++.+..+.+++.+++    +.++...
T Consensus       183 ~~~~~~~~~~~~~e~~~~~----~-~~~-------------------------~~~~~~~~~~~~l~~~----~~~~~~~  228 (437)
T TIGR00792       183 GVVSLIICFFGTKERYSEI----P-KNI-------------------------EKKLSLKQIFKALFKN----DQLLILC  228 (437)
T ss_pred             HHHHHHHHHcCCEecCCCC----C-ccc-------------------------ccCCCHHHHHHHHhCC----HHHHHHH
Confidence            77665554 4467654210    0 000                         0000001122333333    2233333


Q ss_pred             HHHHHHhhhHHHHHHhHHHHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          242 IPFFQQVTGINVIAFYAPLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      +..+......+....+.+++.+.. + ++...+.+.....++.+++.++.++  +.||+|+|+.+..+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~--l~~r~g~~~~~~~~  293 (437)
T TIGR00792       229 LAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPR--LVKKFGRKILFAGG  293 (437)
T ss_pred             HHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCcHHHHHHH
Confidence            333333333444444555555443 4 4566677777778889999999999  99999999987765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.85  E-value=2.1e-19  Score=145.88  Aligned_cols=240  Identities=18%  Similarity=0.163  Sum_probs=197.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +++++|+|+|.+..|.++++..+...+.+++..+++.|+|.++.+..++++..++.++-... +.+.++.+-.+.|.+.+
T Consensus        36 ~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIa  114 (395)
T COG2807          36 DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIA  114 (395)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHH
Confidence            67899999999999999999999999999999999999999999999999999999998877 77888899999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNS  179 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~  179 (310)
                      ..+...+.++.+.|| |+-+..+++|....++|..+++.++..+.+..  .+||....+.+.++++.++.++.-...++ 
T Consensus       115 v~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~--~gW~~aL~~WAl~allAl~~WlPq~~r~~-  190 (395)
T COG2807         115 VINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHS--GGWRGALGFWALLALLALLIWLPQALREQ-  190 (395)
T ss_pred             HHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh--ccHHHHHHHHHHHHHHHHHHHhhhccccc-
Confidence            999999999999997 56889999999999999999888877676654  47999999999999888877653211110 


Q ss_pred             hHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHH
Q 021634          180 LIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAP  259 (310)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (310)
                      ...                                  .+....+..+++    +++..+...+.+..+...++....|+|
T Consensus       191 ~~~----------------------------------~~~~~~~~~~vw----~~~~aW~vtLfmGlqS~~~Y~~~~WLP  232 (395)
T COG2807         191 AAS----------------------------------IATKLVSVRKVW----RSPLAWQVTLFMGLQSLLYYIVIGWLP  232 (395)
T ss_pred             ccc----------------------------------cccccccccccc----cCchhHHHHHHHHhhHHHHHHHHHHHH
Confidence            000                                  000011112233    344455566666677778899999999


Q ss_pred             HHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchh
Q 021634          260 LLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKL  304 (310)
Q Consensus       260 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~  304 (310)
                      .++.+.|+|..+++.+.++..+..++..+....  +.+|...++.
T Consensus       233 ~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~--la~R~~n~r~  275 (395)
T COG2807         233 AILIDRGLSAAEAGSLLSLMQLAQLPTALLIPL--LARRSKNQRP  275 (395)
T ss_pred             HHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHH--HHHHhcccch
Confidence            999999999999999999999999999999999  8887654433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.85  E-value=5e-21  Score=168.18  Aligned_cols=277  Identities=17%  Similarity=0.206  Sum_probs=202.3

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHH-HHHHhhcc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFG-RLLLGVGV   98 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-r~l~G~~~   98 (310)
                      ++++++++.+.++++|+.++......+.+++.+.+.||||.|.+.+.|.++..++.++.++++++|++++. -++.|+|.
T Consensus        70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~  149 (509)
T KOG2504|consen   70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGL  149 (509)
T ss_pred             HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccc
Confidence            66788999999999999999999999999999999999999999999999999999999999999998876 79999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccC-Cc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE-TP  177 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e-s~  177 (310)
                      |..+......+..+| +++|+.+.|+...+.++|.++-|.+...+.+   ..|||+.+++.+.+.+-.++....+++ ++
T Consensus       150 ~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~---~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~  225 (509)
T KOG2504|consen  150 GLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLS---KYGWRGALLIFGGISLNVLVAGALLRPLSP  225 (509)
T ss_pred             hhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHH---HhCcHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            999999999999887 5789999999999999999988888555543   468999999988887766666555433 22


Q ss_pred             hhhHhccCcHHHHHHHHH-------HhcCC-cchHH-----HHHHHHHhhhccccccchhhhhc----cccchhHHHHHH
Q 021634          178 NSLIQRKSDHQKAKLMLQ-------RVRGT-NDVEA-----EFDDLLKASSTAKTINHPFKKII----QRKYRPQLLMAM  240 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  240 (310)
                      +....+.++.++..+..+       +.... +....     ..++.++..++..  ..+.+..+    .+..+.+.++.+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~ll~~~~fl~~  303 (509)
T KOG2504|consen  226 PKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWR--NSPLQAFLSMLDLSLLKDPKFLLL  303 (509)
T ss_pred             CCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCcccc--ccchhhhhhhhhHHHHcCchHHHH
Confidence            211110000000000000       00000 00000     0001111111111  00111111    133445777777


Q ss_pred             HHHHHHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchh
Q 021634          241 AIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKL  304 (310)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~  304 (310)
                      .+.......++.....++|.+.++.|++..+++.+.++.++..++|+++.|+  +.|+...++.
T Consensus       304 ~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~--laD~~~~~~~  365 (509)
T KOG2504|consen  304 ALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGL--LADKPGIRAL  365 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhh--hcCccccchH
Confidence            7887788888899999999999999999999999999999999999999999  9999874433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.85  E-value=1.7e-19  Score=157.66  Aligned_cols=251  Identities=13%  Similarity=0.029  Sum_probs=149.3

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh---hhh-----hHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG---AAV-----NVYMLIFGR   91 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~-----~~~~l~~~r   91 (310)
                      .++++++|+++.+.+++.+++.++..++++++|+++||+|||++++++..+..++.....   .++     ......+++
T Consensus        35 ~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (420)
T PRK09528         35 IWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGG  114 (420)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677999999999999999999999999999999999999999887666554433211   111     111122233


Q ss_pred             HHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh
Q 021634           92 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  171 (310)
Q Consensus        92 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  171 (310)
                      ++.|.+.....+....+..+ . .++++...+.......+|..+++.+++.+..    .+|++.|++.++..++..+..+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~----~~~~~~f~~~~~~~~~~~~~~~  188 (420)
T PRK09528        115 IYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGILFN----INPQINFWLGSGSALILLVLLF  188 (420)
T ss_pred             HHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHHHh----cCchHhHHHHHHHHHHHHHHHh
Confidence            44443333333333332222 2 2456777788888888999999999887754    3699999988877776666655


Q ss_pred             ccc-CCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhh
Q 021634          172 FLP-ETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG  250 (310)
Q Consensus       172 ~~~-es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (310)
                      +.+ |+++....+++  ++          +              ++++......++.++++..+...+    ..+.....
T Consensus       189 ~~~~~~~~~~~~~~~--~~----------~--------------~~~~~~~~~~~~~l~~~~~~~l~l----~~~~~~~~  238 (420)
T PRK09528        189 FAKPDAPSTAKVANA--LG----------A--------------NASAVSLKDALALLKLPKFWFLVL----YVIGVACF  238 (420)
T ss_pred             cccccccchhhhccc--hh----------c--------------ccccccHHHHHHHccCCCeEeehH----HHHHHHHH
Confidence            543 33221100000  00          0              000000011222333322111111    11111112


Q ss_pred             HHHHHHhHHHHHHH----cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          251 INVIAFYAPLLFRT----IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       251 ~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      +.....+.|.++.+    .+.+..+.+...++..+...++.+..++  +.||+|+|+.+..+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--l~dr~g~~~~~~~~  298 (420)
T PRK09528        239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPF--IINRIGAKNALLLA  298 (420)
T ss_pred             HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCcchhhHHH
Confidence            22333345555533    3556677788888888888999999999  99999999987653

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.85  E-value=4e-19  Score=146.29  Aligned_cols=249  Identities=14%  Similarity=0.145  Sum_probs=196.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHhh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG---AAVNVYMLIFGRLLLGV   96 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~   96 (310)
                      |.+++.|+++..|.+++...++.++.+.+++.|++.+|+|+|+.+++|..+..+++.+..   ...++..++++-++.|.
T Consensus        37 p~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~  116 (422)
T COG0738          37 PHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILAS  116 (422)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHh
Confidence            888999999999999999999999999999999999999999999999999999999874   55788899999999999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC----------------CCchhHHHHHhhH
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK----------------GGWGWRVSLALAA  160 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----------------~~~~wr~~~~~~~  160 (310)
                      |.+...+....++....++++....+.+.+.++++|..++|+++..+....                ....|+.+|...+
T Consensus       117 Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~  196 (422)
T COG0738         117 GIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILA  196 (422)
T ss_pred             hhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHH
Confidence            999999999999999999988888999999999999999999988665420                0114777887766


Q ss_pred             HHHHHHHHHhhc--ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHH
Q 021634          161 VPASILTLGALF--LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLM  238 (310)
Q Consensus       161 ~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (310)
                      ...++..+....  .||.+....++.+                                 ..+....+.+++    +.+.
T Consensus       197 ~~lvll~v~~~~~k~p~~~~~~~~~~~---------------------------------~~~~~~~~l~~~----~~~~  239 (422)
T COG0738         197 GLLVLLAVLILLSKLPDLQVAAPSLGA---------------------------------SGSAGLSSLFQN----KHLR  239 (422)
T ss_pred             HHHHHHHHHHHhccCCcCCcccccccc---------------------------------cccchHHHHHhC----hHHH
Confidence            666655555444  3433211000000                                 000022334433    3344


Q ss_pred             HHHHHHHHHhhhHHHHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          239 AMAIPFFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      ...+..++..........|++.|+.+ .|.+..++....+....+.++|++++.+  ++.|+...|.+.+
T Consensus       240 ~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~--lm~~~~~~k~Laf  307 (422)
T COG0738         240 LGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSA--LMSRIKPEKYLAF  307 (422)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCHHHHHHH
Confidence            44555555566667788899999988 5999999999999999999999999999  9999988877653

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=6.4e-21  Score=155.97  Aligned_cols=235  Identities=14%  Similarity=0.067  Sum_probs=183.8

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccc
Q 021634           23 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  102 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  102 (310)
                      .++.+-++.++|++.....+.+.+.+++.|.+.||+|+|-.+++|.+.....++++++.++++.++++|.++|+|.++..
T Consensus        98 ~~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~  177 (464)
T KOG3764|consen   98 AISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFAD  177 (464)
T ss_pred             ccCccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHH
Confidence            45666778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhhhcccccc-hhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchhhH
Q 021634          103 QSVPLYLSEMAPARY-RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLI  181 (310)
Q Consensus       103 ~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~  181 (310)
                      +...++++|.+|+++ |++++|..-.+.++|.+++|+.++++.+..   |.+..|++.+++.++-..+.+++-|..+.. 
T Consensus       178 tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~---Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~-  253 (464)
T KOG3764|consen  178 TSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA---GKSAPFLVLAIVLLLDGALQLLVIEPTEMD-  253 (464)
T ss_pred             hhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc---CCcCcHHHHHHHHHHHHHHHHheeCccccC-
Confidence            999999999999864 799999999999999999999999998764   589999999999988777776643321100 


Q ss_pred             hccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q 021634          182 QRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLL  261 (310)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (310)
                        +                               ++..+..++.++++.    +.++...................++..
T Consensus       254 --~-------------------------------~~~~~~~~~~~Ll~d----P~I~~~agai~~~n~~lafLePtlslw  296 (464)
T KOG3764|consen  254 --P-------------------------------DSTEQGTPMWSLLMD----PYILLIAGAITFSNSSLAFLEPTLSLW  296 (464)
T ss_pred             --c-------------------------------cccccCccHHHHHhC----chHhhhhcchhhccchHHHhCcccHHH
Confidence              0                               011112233444433    223323333223333334445555565


Q ss_pred             H-HHcCCCch-hHHHHHHHHHhhhhhhhhHHHHHHHHHHhcc
Q 021634          262 F-RTIGLGRL-KVCQLSKWIECGGSIGFGRNMWVKWMNRVRW  301 (310)
Q Consensus       262 ~-~~~g~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~  301 (310)
                      . ++.. ++. +.+..+...++...++..+.+.  +.||++.
T Consensus       297 m~e~m~-~p~w~~G~~fLp~~~~y~ig~~lfg~--la~k~~~  335 (464)
T KOG3764|consen  297 MLETMF-TPGWEVGLAFLPASLSYAIGTNLFGK--LADKYPH  335 (464)
T ss_pred             HHHhcc-CCCcceeeeecccccchhccCchHHH--HHHhcCc
Confidence            5 4555 444 8888888999999999999999  9999984

>TIGR00889 2A0110 nucleoside transporter

Probab=99.83  E-value=2.8e-19  Score=155.73  Aligned_cols=245  Identities=11%  Similarity=0.009  Sum_probs=158.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCc-hhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR-KPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      +.+++++|++.+++|++.+++.++..++++++|.++||+|| |+++.++.++..++..+..+.++++.+.+.|++.|++.
T Consensus        27 ~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  106 (418)
T TIGR00889        27 SYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAY  106 (418)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            56777899999999999999999999999999999999965 77888888888888888888899999999999999977


Q ss_pred             cccccchhhhhh--------hcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh
Q 021634           99 GFANQSVPLYLS--------EMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus        99 ~~~~~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                      +...+...++..        |......|.+..+      .+|..+++.+++.+..   ...|+ .|++.++..++..+..
T Consensus       107 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~---~~~~~-~f~~~~~~~~~~~~~~  176 (418)
T TIGR00889       107 MPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDI---ELSNI-QLYITAGSSALLGVFA  176 (418)
T ss_pred             ccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcc---cchhH-HHHHHHHHHHHHHHHH
Confidence            666555544321        2222234445444      3566666666665522   12354 3555555555555555


Q ss_pred             hcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhh
Q 021634          171 LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG  250 (310)
Q Consensus       171 ~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (310)
                      +++||+|+...+++.   +.++                          ..+.+.++.+|++.....+    +..+.....
T Consensus       177 ~~~~e~~~~~~~~~~---~~~~--------------------------~~~~~~~~~~k~~~~~~~~----~~~~~~~~~  223 (418)
T TIGR00889       177 LTLPDIPVAKSTAKM---SIKV--------------------------MLGLDAFILFKNKRMAIFF----FFSMLLGAP  223 (418)
T ss_pred             hcCCCCCCCcccccc---CHHH--------------------------HhhhhHHHHhcCCCeeeHH----HHHHHHHhH
Confidence            678887531110000   0000                          0000112233332211112    222222222


Q ss_pred             HHHHHHhHHHHHHHcCCCc--------hhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          251 INVIAFYAPLLFRTIGLGR--------LKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       251 ~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      ......+.+.++++.|.++        +..+...+...+..+++.+..++  +.||+|+|++++.++
T Consensus       224 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~--l~dr~g~r~~l~~~~  288 (418)
T TIGR00889       224 LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPF--FLKRFGIKKVMLLSL  288 (418)
T ss_pred             HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHhCcHHHHHHHH
Confidence            2344566677787776554        55688888888899999999999  999999999987654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PTZ00207 hypothetical protein; Provisional

Probab=99.82  E-value=4.3e-19  Score=157.42  Aligned_cols=146  Identities=14%  Similarity=0.078  Sum_probs=122.3

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHH
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA------VNVYMLIFGRL   92 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~   92 (310)
                      .+.+++++|+|..+.+++.++. ......+++.|+++||+|||+++.++.+++.++.++++++      .+++.+.+.|+
T Consensus        50 s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~  128 (591)
T PTZ00207         50 SGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNG  128 (591)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence            3668899999999999998874 4455678889999999999999999999999999999987      68999999999


Q ss_pred             HHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHH-HHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh
Q 021634           93 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALA-ANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  171 (310)
Q Consensus        93 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  171 (310)
                      +.|++.+...+.....+.+++| ++||++.++...+.++|..+ +++...++.     .+|+..+++.+++.++..+..+
T Consensus       129 l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-----~~~~~~fl~l~vl~~vv~ll~~  202 (591)
T PTZ00207        129 LMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-----DNTSAYFFFLMSFALVVGILAI  202 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888888999996 78999999999999999976 444444433     2588888887777776655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.82  E-value=3.2e-18  Score=151.36  Aligned_cols=152  Identities=16%  Similarity=0.138  Sum_probs=128.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhh-hCchhHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHhhc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGAAVNVYM-LIFGRLLLGVG   97 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~r~l~G~~   97 (310)
                      .++++++|++.++.+++.+.+.....+..+++|+++|| +|||++++.+.+++.++.+.++++.+... ++++|.++|+|
T Consensus        39 ~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig  118 (489)
T PRK10207         39 VFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVG  118 (489)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhc
Confidence            56678899999999999999998999999999999999 99999999999999999999998876444 55789999999


Q ss_pred             ccccccchhhhhhhccccc--chhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhccc
Q 021634           98 VGFANQSVPLYLSEMAPAR--YRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP  174 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~  174 (310)
                      .|...+...+++.|.+|++  +|+++.++++.+.++|..++|.+++++.+.   .|||+.|++.++..++..+...+.+
T Consensus       119 ~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~---~gw~~~F~i~~i~~~~~~~~~~~~~  194 (489)
T PRK10207        119 NGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADK---FGYSVTYNLCGAGLIIALLVYFACR  194 (489)
T ss_pred             cccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999887  457789999999999999999999888764   4799999886554333333333333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.81  E-value=1.7e-17  Score=146.64  Aligned_cols=149  Identities=17%  Similarity=0.213  Sum_probs=130.2

Q ss_pred             ccccc--cccchhHHHHHHHHHHHHHHHHHhhhHHHHhh-hCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhc
Q 021634           21 KISNY--CKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        21 ~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   97 (310)
                      +++++  +|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++++.+.++|.+.|++
T Consensus        36 yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g  115 (475)
T TIGR00924        36 YLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVG  115 (475)
T ss_pred             HHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhc
Confidence            44555  89999999999999999999999999999999 8999999999999999999999988888899999999999


Q ss_pred             ccccccchhhhhhhcccccc---hhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634           98 VGFANQSVPLYLSEMAPARY---RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      .|...+....+++|++|+++   |+++.++++.+.++|..+++.+++.+.+.   .+|++.|.+.++..++..+..++
T Consensus       116 ~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~---~g~~~~f~~~~~~~~~~~l~~~~  190 (475)
T TIGR00924       116 SGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN---YGYHVGFNLAAVGMVIGLLTFFA  190 (475)
T ss_pred             cccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998764   88899999999999999999998877643   47999998877655544444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.79  E-value=1.3e-17  Score=147.24  Aligned_cols=148  Identities=22%  Similarity=0.261  Sum_probs=119.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +++..|+|-+ +...|+.+...++..++.++.|+++|.||||..++.+.++..+|+++++.++|...++.+..+.|+|.|
T Consensus        68 ~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG  146 (599)
T PF06609_consen   68 PYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAG  146 (599)
T ss_pred             HHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhH
Confidence            4566677654 567889999999999999999999999999999999999999999999999999999999999999977


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      ... .....++|..|.|.|....++...........++.++..+..   +.+|||.|++.++...+.++..++
T Consensus       147 ~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  147 VQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             HHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHHHHHHHHHHHH
Confidence            665 445568999999999887776665555545456666544432   347999999988877766655433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.76  E-value=1.1e-17  Score=149.00  Aligned_cols=177  Identities=18%  Similarity=0.106  Sum_probs=130.2

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHhhc
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSAL---GGAAVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~r~l~G~~   97 (310)
                      .+++++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+.   ...+++...+++++++.|++
T Consensus       276 ~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  355 (490)
T PRK10642        276 YLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVI  355 (490)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            355677888888888888888999999999999999999999988877654443322   22234567777889999887


Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCc
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETP  177 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~  177 (310)
                      .+...+....++.|.+|++.|+++++.......++..++|.+.+.+.+..  .+|+..+++..+++++..+..+++||+|
T Consensus       356 ~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~--~~~~~~~~~~~~~~~i~~~~~~~~pes~  433 (490)
T PRK10642        356 LNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST--QNLMMPAYYLMVVAVIGLITGVTMKETA  433 (490)
T ss_pred             HHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHHHHHhcccc
Confidence            77777777888899999999999999744334444556666665554322  2477777666667777666677789999


Q ss_pred             hhhHhc----cCcHHHHHHHHHHhcC
Q 021634          178 NSLIQR----KSDHQKAKLMLQRVRG  199 (310)
Q Consensus       178 ~~~~~~----~~~~~~~~~~~~~~~~  199 (310)
                      +++.++    +++.||+++.++++++
T Consensus       434 ~~~~~~~~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        434 NRPLKGATPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             CCCCCCccccccchhhHHHHhhcccc
Confidence            987654    2337888888888763

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.76  E-value=1e-16  Score=138.81  Aligned_cols=247  Identities=12%  Similarity=-0.010  Sum_probs=159.7

Q ss_pred             cccccccccchhHHHHHH--HHHHHHHHHHHhhh-HHHHhhhCchhHHHHHHHHHHH-HHHHhh---hhhh-HHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFT--SSLYVAGLVASFVA-SSVTRAFGRKPSVLMGGAAFLA-GSALGG---AAVN-VYMLIFGR   91 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-g~l~dr~Grr~~~~~~~~~~~~-~~~~~~---~~~~-~~~l~~~r   91 (310)
                      |...+|.|.|.+++|.+.  ++..+...+.++++ ++.+||+||||..++.+.+... .....+   ...+ ...++..-
T Consensus        25 p~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (390)
T TIGR02718        25 PTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLL  104 (390)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            556677899999999974  66677787888888 4579999999987665533222 122222   2222 22334444


Q ss_pred             HHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh
Q 021634           92 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  171 (310)
Q Consensus        92 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  171 (310)
                      ++.+++.+...+..-.+..|..++++++...+....+..+|.++++.....+.+.   .+||..|++.++..++..+..+
T Consensus       105 ~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~---~gw~~~f~~~a~l~~~~~~~~~  181 (390)
T TIGR02718       105 ACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK---FGQRPAFLLVACVPLASLVCVL  181 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHHH
Confidence            5555666666666677778888888888888888888888988888776655543   4799999998888877666655


Q ss_pred             cccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhH
Q 021634          172 FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGI  251 (310)
Q Consensus       172 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (310)
                      +++|+++.   +++ .++                             +...+.++.+|++..+.......    ......
T Consensus       182 ~~~~~~~~---~~~-~~~-----------------------------~~~~~~~~~l~~~~~~~~~~~~~----l~~~~~  224 (390)
T TIGR02718       182 WLKDRAVA---SPE-APL-----------------------------ARRASLFRFFRRPLAWSLLALAL----LSAMTA  224 (390)
T ss_pred             HcCCCCcC---ccc-cch-----------------------------hhHHHHHHHHcCcCHHHHHHHHH----HHHHHH
Confidence            55443211   000 000                             00012334444433222222222    222233


Q ss_pred             HHHHHhHHHHHHHcCCCchhHHHHHHHHHh-hhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          252 NVIAFYAPLLFRTIGLGRLKVCQLSKWIEC-GGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       252 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .....+.+.++++.|+++++.+........ ...++.+++++  +.||+|+|+.+.++
T Consensus       225 ~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~--l~~r~g~~~~l~~~  280 (390)
T TIGR02718       225 VSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAW--LVRRAGLWRTFILG  280 (390)
T ss_pred             HHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHH
Confidence            444556778888899999999998887764 66677889999  99999999887654

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.73  E-value=2.6e-16  Score=139.15  Aligned_cols=247  Identities=16%  Similarity=0.154  Sum_probs=172.3

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHhhcc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~   98 (310)
                      .+..-|+...+++.....+...+.++++|.++||+.||++++.+-++..+..+..++.     .+.+.+++.-++.|++.
T Consensus        38 ~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~  117 (524)
T PF05977_consen   38 TQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGS  117 (524)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHH
Confidence            3445578889999999999999999999999999999999999888776655443332     47788899999999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCch
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPN  178 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~  178 (310)
                      +...|...+++.|..|+++...+.++.+...++..++||.+++.+...   .|-.+.|.+.++..++........++.++
T Consensus       118 a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~---~G~~~~f~inalsfl~~i~~l~~~~~~~~  194 (524)
T PF05977_consen  118 AFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAF---FGAAAAFLINALSFLISILALLRWKPPPP  194 (524)
T ss_pred             HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence            999999999999999999999999999999999999999999877653   24566777766555544433333332211


Q ss_pred             hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                         .++.+.|.   .             .++.          +..++-..+++..+..+....+.    ......+...+
T Consensus       195 ---~~~~~~e~---~-------------~~~l----------~~G~ryv~~~~~l~~~l~~~~~~----~l~~~a~~aLl  241 (524)
T PF05977_consen  195 ---PSSLPRER---F-------------FSAL----------REGLRYVRSSPPLRSVLLRSFLF----NLFASAVWALL  241 (524)
T ss_pred             ---ccccchhh---h-------------hhhH----------HHHHHHHhcchHHHHHHHHHHHH----HHhhhHHHHhh
Confidence               00000000   0             0000          01111122222222222211111    11223345567


Q ss_pred             HHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          259 PLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       259 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      |.+.++ .|.++...|++.+..++++++|.++.+.  +.+|+++++++..+
T Consensus       242 Pl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~--l~~~~~~~~lv~~~  290 (524)
T PF05977_consen  242 PLFARDVLGGGASGYGLLLAAFGVGAILGALLLPR--LRRRLSSRRLVLLA  290 (524)
T ss_pred             hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH--hhcccCcchhhHHH
Confidence            888854 5999999999999999999999999999  88888887776543

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.73  E-value=5.6e-17  Score=142.05  Aligned_cols=252  Identities=14%  Similarity=0.149  Sum_probs=175.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHh----hhCchhHH-HHHHHHHHHHHHHhhhh-h-------hHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR----AFGRKPSV-LMGGAAFLAGSALGGAA-V-------NVYM   86 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~~-~~~~~~~~~~~~~~~~~-~-------~~~~   86 (310)
                      +...+.+|+++...+.+..+.-+..++..|+.|.++|    |+|||+.. ++|.....++.+++... +       ....
T Consensus        26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~  105 (428)
T PF13347_consen   26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVW  105 (428)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHH
Confidence            4456677999999999999999999999999999999    89976555 46777788877776655 3       2233


Q ss_pred             HHHHHHHHhhcccccccchhhhhhhccc-ccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCC---C-chhHHHHHhhHH
Q 021634           87 LIFGRLLLGVGVGFANQSVPLYLSEMAP-ARYRGAINNGFQFSIGIGALAANFINYGTEQIKG---G-WGWRVSLALAAV  161 (310)
Q Consensus        87 l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~-~~wr~~~~~~~~  161 (310)
                      +.+..++..++.........++..|..+ +++|.+..+.-..+..+|.++...+...+....+   . .+|++...+.++
T Consensus       106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~i  185 (428)
T PF13347_consen  106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAI  185 (428)
T ss_pred             HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHH
Confidence            4666677788888888999999999997 4789999999888888888655555444433222   1 279999988888


Q ss_pred             HHHHHHHHhhc-ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHH
Q 021634          162 PASILTLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM  240 (310)
Q Consensus       162 ~~~~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (310)
                      +.++..+...+ .+|+++....                               .+++.+.++.+++.+++    +.+...
T Consensus       186 v~~v~~~i~~~~~ke~~~~~~~-------------------------------~~~~~~~~~~~~~~~~n----r~~~~l  230 (428)
T PF13347_consen  186 VGLVFFLITFFFVKERSVEVTE-------------------------------QEKKISLRDSLRSLFRN----RPFRIL  230 (428)
T ss_pred             HHHHHhhhhhheeeeccccccc-------------------------------cccccccccchhhhccc----chHHHH
Confidence            88776665544 6662110000                               00111112233444433    333334


Q ss_pred             HHHHHHHhhhHHHHHHhHHHHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          241 AIPFFQQVTGINVIAFYAPLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      .+..+....+........+++.+.. |.+ ...+.......++.+++.++.++  ++||+|+|+.+..+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~--l~~r~gk~~~~~~~~  297 (428)
T PF13347_consen  231 LLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGR--LSKRFGKKKVYIIGL  297 (428)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHH--HHHHccceeehhhhH
Confidence            4444444445556666777777665 544 56677777888889999999999  999999999887654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.72  E-value=3.1e-16  Score=138.95  Aligned_cols=255  Identities=12%  Similarity=0.036  Sum_probs=160.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHh----hhCc-hhHHHHHHHHHHHHHHHhhhhh------hHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR----AFGR-KPSVLMGGAAFLAGSALGGAAV------NVYMLI   88 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Gr-r~~~~~~~~~~~~~~~~~~~~~------~~~~l~   88 (310)
                      .+..+.+|+++..+|.+..+.-+..++..|+.|.++|    |+|| |+.++.+....+++.++....+      .+..+.
T Consensus        31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~  110 (473)
T PRK10429         31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC  110 (473)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            4456678999999999999999999999999999999    6698 5566667777777765554322      133445


Q ss_pred             HHHHHHhhcccccccchhhhhhhcc-cccchhhhhhHHHHHHHHHHHHHHHHHhhh----cccCCCchhHHHHHhhHHHH
Q 021634           89 FGRLLLGVGVGFANQSVPLYLSEMA-PARYRGAINNGFQFSIGIGALAANFINYGT----EQIKGGWGWRVSLALAAVPA  163 (310)
Q Consensus        89 ~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~wr~~~~~~~~~~  163 (310)
                      +..++.+++.........++..|.. ++++|.+..++-..+..+|..+.+.+...+    ....+..+|+....+.+++.
T Consensus       111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~  190 (473)
T PRK10429        111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF  190 (473)
T ss_pred             HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            5566777778888888889999998 589999988886666666655554443221    11112236887777777666


Q ss_pred             HHHHHHhhc-ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHH
Q 021634          164 SILTLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAI  242 (310)
Q Consensus       164 ~~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (310)
                      ++..+..++ .+|.++....+.+                                ++++.++++.++...+++.+.....
T Consensus       191 ~~~~~~~~~~~~e~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~n~~~~~ll~  238 (473)
T PRK10429        191 IVSTIITLRNVHEVYSSDNQVSA--------------------------------EGSHLTLKDIVALIYKNDQLSCLLG  238 (473)
T ss_pred             HHHHHHHHcCceecCCccccccc--------------------------------cccCCCHHHHHHHHhcCHHHHHHHH
Confidence            655444433 6665321000000                                0011223333332222233333333


Q ss_pred             HHHHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          243 PFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      ..+......+....+.+++.+....+....+.+.....++.+++.++.++  +.||+|+|+.++++
T Consensus       239 ~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~--l~~r~gkk~~~~~~  302 (473)
T PRK10429        239 MALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPR--LVKSLSRRILWAGA  302 (473)
T ss_pred             HHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCcHHHHHHH
Confidence            33333344455555556555544335555666666667888888888999  99999999987644

>PRK09669 putative symporter YagG; Provisional

Probab=99.72  E-value=1.4e-16  Score=140.18  Aligned_cols=250  Identities=11%  Similarity=0.020  Sum_probs=153.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhh----hCch-hHHHHHHHHHHHHHHHhhhhhh------HHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA----FGRK-PSVLMGGAAFLAGSALGGAAVN------VYMLI   88 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~   88 (310)
                      ....+++|+++.+.+.+.++.-+..++..|+.|+++||    +||| +.++.+....+++.++....++      .+.+.
T Consensus        34 ~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~  113 (444)
T PRK09669         34 YFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYAC  113 (444)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHH
Confidence            45667899999999999999999999999999999998    7875 5555676776666655444432      34555


Q ss_pred             HHHHHHhhcccccccchhhhhhhcc-cccchhhhhhHHHHHHHHHHHHHHHHHhhhccc----CCCchhHHHHHhhHHHH
Q 021634           89 FGRLLLGVGVGFANQSVPLYLSEMA-PARYRGAINNGFQFSIGIGALAANFINYGTEQI----KGGWGWRVSLALAAVPA  163 (310)
Q Consensus        89 ~~r~l~G~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~wr~~~~~~~~~~  163 (310)
                      +..++.+.+......+..++.+|+. ++++|++..+....+..+|..+++.+...+...    ....+|+..+.+.+++.
T Consensus       114 ~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~  193 (444)
T PRK09669        114 VTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLG  193 (444)
T ss_pred             HHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence            5666667766677777788899988 558899888888777777777666543322211    12357998888877777


Q ss_pred             HHHHHHhhc-ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHH
Q 021634          164 SILTLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAI  242 (310)
Q Consensus       164 ~~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (310)
                      ++..+..++ .+|.++..  +++                               +.+.....+..++++..+....    
T Consensus       194 ~v~~~~~~~~~~e~~~~~--~~~-------------------------------~~~~~~~~~~~~~n~~~~~l~~----  236 (444)
T PRK09669        194 VVLFFCCFFMTKERYTPE--VDN-------------------------------SSSVWKDLKLLLGNSQWRIMFI----  236 (444)
T ss_pred             HHHHHHHhCCeEEecCCC--CcC-------------------------------CCCHHHHHHHHhCCchHHHHHH----
Confidence            665554443 45532110  000                               0000112334444433222222    


Q ss_pred             HHHHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          243 PFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      ..+.............+++.+..-.+++....+.....+..+++.++.++  +.||+|+|+.+..+
T Consensus       237 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~--l~~r~gk~~~~~~~  300 (444)
T PRK09669        237 FNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSER--LLGKFDRVRAFKWT  300 (444)
T ss_pred             HHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhChHHHHHHH
Confidence            22222222222233333333333222333444455556777788888888  99999999887654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.71  E-value=1.1e-15  Score=133.24  Aligned_cols=157  Identities=17%  Similarity=0.181  Sum_probs=118.6

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHh----hhCchhHHHHH-HHHHHHHHHHhhhhhhHH-----------
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR----AFGRKPSVLMG-GAAFLAGSALGGAAVNVY-----------   85 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~~~~~-~~~~~~~~~~~~~~~~~~-----------   85 (310)
                      +.+++|+++.+.+++..+..+...+.+++.|+++|    |+|||+.++.+ .....++..+.+++++..           
T Consensus        30 yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~  109 (477)
T TIGR01301        30 YVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKT  109 (477)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccc
Confidence            44678999999999999999999999999999999    59999998874 566666666666765543           


Q ss_pred             ------HHHHHHHHHhhcccccccchhhhhhhcccccch--hhhhhHHHHHHHHHHHHHHHHHhhhc--ccC----CC--
Q 021634           86 ------MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYR--GAINNGFQFSIGIGALAANFINYGTE--QIK----GG--  149 (310)
Q Consensus        86 ------~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~----~~--  149 (310)
                            ..+++-.+..++.+..++...++++|.+|+++|  +.+.++.+...++|.++++.+++...  ...    ..  
T Consensus       110 ~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~  189 (477)
T TIGR01301       110 KPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC  189 (477)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence                  223333344456777788889999999998865  57899999999999999999887541  110    00  


Q ss_pred             ----chhHHHHHhhHHHHHHHHHHh-hcccCCch
Q 021634          150 ----WGWRVSLALAAVPASILTLGA-LFLPETPN  178 (310)
Q Consensus       150 ----~~wr~~~~~~~~~~~~~~~~~-~~~~es~~  178 (310)
                          .+.|..|++.++..++..+.. +..+|.|.
T Consensus       190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~  223 (477)
T TIGR01301       190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPL  223 (477)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCC
Confidence                167899999887777766555 45888763

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.69  E-value=6.3e-15  Score=131.08  Aligned_cols=144  Identities=17%  Similarity=0.183  Sum_probs=120.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhh-hCchhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHhhc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGAAV-NVYMLIFGRLLLGVG   97 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~   97 (310)
                      .++++++|+++++.+++.+.+........+++|+++|| +|||+.+..+.++..++..++++++ +.+.+.++|++.|++
T Consensus        46 ~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig  125 (500)
T PRK09584         46 VYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVG  125 (500)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            55678899999999888888776666777899999999 5999999999999999988888874 456677889999999


Q ss_pred             ccccccchhhhhhhcccccc--hhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHH
Q 021634           98 VGFANQSVPLYLSEMAPARY--RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL  166 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~  166 (310)
                      .|...+....++.|++|+++  |..+.++++.+.++|..++|.+++++.+.   .|||+.|++.++..++.
T Consensus       126 ~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~---~g~~~~F~i~~i~~~i~  193 (500)
T PRK09584        126 NGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK---YGWSVAFALSVVGMLIT  193 (500)
T ss_pred             hhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHH
Confidence            99888888899999998653  45678888999999999999999887653   47999999877544443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.65  E-value=9.8e-16  Score=112.68  Aligned_cols=135  Identities=27%  Similarity=0.392  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhhcccccc
Q 021634           38 SSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARY  117 (310)
Q Consensus        38 ~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~  117 (310)
                      +.+.++..+++++.|++.||+|||+.+..+.....++.+.....++++.+.+.+++.|++.+...+....++.|.+|+++
T Consensus         5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   84 (141)
T TIGR00880         5 AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEE   84 (141)
T ss_pred             EeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence            45667888999999999999999999999999999998888888999999999999999999888999999999999999


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccC
Q 021634          118 RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPE  175 (310)
Q Consensus       118 r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~e  175 (310)
                      |++..+..+....+|..+++.+.+.+.+   ..+|++.+++.++..++..+..++ .||
T Consensus        85 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        85 RGVALGLMSAGIALGPLLGPPLGGVLAQ---FLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhHHHHHHHHhHHHHHHHhHHhHHHHhc---ccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999887764   346999998877777766655544 444

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.65  E-value=3.3e-14  Score=122.31  Aligned_cols=249  Identities=15%  Similarity=0.069  Sum_probs=162.3

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhC-chhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccc
Q 021634           23 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG-RKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  101 (310)
                      -++.|+|..|+|.+.+...+...++++++|.++||++ +|+.+.+..++..+........++++.+++.-++..+...+.
T Consensus        29 L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~  108 (400)
T PF03825_consen   29 LESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPT  108 (400)
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccH
Confidence            3456899999999999999999999999999999986 677877777777777777777888988888888888877777


Q ss_pred             ccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHH-HhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchhh
Q 021634          102 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFI-NYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSL  180 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~  180 (310)
                      .+...++..+...+  ++.-.+-.-...++|..++... ...+....+..+....+++.+...++.....+.+|+.|+..
T Consensus       109 ~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~  186 (400)
T PF03825_consen  109 MPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKR  186 (400)
T ss_pred             HHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence            77777777776642  3333444444555555444322 11122222212233455666655555555556688876211


Q ss_pred             HhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHHH
Q 021634          181 IQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPL  260 (310)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (310)
                      ..++. .                             ++....+..+++|++.    +....+..+...........|.+.
T Consensus       187 ~~~~~-~-----------------------------~~~~~~~~~~llk~~~----~~~Fll~~~l~~~~~~~~~~f~~~  232 (400)
T PF03825_consen  187 SAKES-V-----------------------------KKLLGLDALKLLKNPR----FLVFLLAAFLIGISHAAYYTFFSI  232 (400)
T ss_pred             ccCCC-c-----------------------------ccccchHHHHHhcCcc----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11100 0                             0000111123343322    222333333333345567778888


Q ss_pred             HHHHcC-CCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          261 LFRTIG-LGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       261 ~~~~~g-~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      |+++.| .+.+..+.+.++..++.++.-...++  +..|+|.|+++.+++
T Consensus       233 yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~--~~~r~g~~~ll~~a~  280 (400)
T PF03825_consen  233 YLQELGGYSGSTIGILWALGVVAEIPFFFFSGR--FLKRFGIKWLLLLAL  280 (400)
T ss_pred             HHHHcccchhhHHHHHHHHHHHHHHHHHHHHHH--HHHhcCHHHHHHHHH
Confidence            999997 77888888888888899999899999  999999999988764

>TIGR00788 fbt folate/biopterin transporter

Probab=99.64  E-value=3e-15  Score=132.07  Aligned_cols=268  Identities=11%  Similarity=-0.016  Sum_probs=164.2

Q ss_pred             ccccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhC-----chhHHHHHHHHHH-HHHHHhhhhhhHHHHH-H
Q 021634           17 KEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG-----RKPSVLMGGAAFL-AGSALGGAAVNVYMLI-F   89 (310)
Q Consensus        17 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~-~~~~~~~~~~~~~~l~-~   89 (310)
                      .-.+.+.+++|+|+++++...++..+...+-.+ +|+++||++     ||+.++++.++.. ++....+..++..... +
T Consensus        47 ~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~  125 (468)
T TIGR00788        47 PLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAA  125 (468)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence            334667888999999999999999999998666 999999998     7777777776663 4333334334544444 4


Q ss_pred             HHHHHhhcccccccchhhhhhhcccccchhhh---hhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHH
Q 021634           90 GRLLLGVGVGFANQSVPLYLSEMAPARYRGAI---NNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL  166 (310)
Q Consensus        90 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~  166 (310)
                      ..++.+++.+......-.+..|..+ +++...   .++......+|.++++.+++.+.+.   .+|+..|++.++..++.
T Consensus       126 ~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~---~~~~~~f~~~a~l~ll~  201 (468)
T TIGR00788       126 FIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK---TLTRILFLITAALLLLQ  201 (468)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHH
Confidence            7889999999888999999999998 555443   3334444557888888888877643   46999999988887777


Q ss_pred             HHHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHH
Q 021634          167 TLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQ  246 (310)
Q Consensus       167 ~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (310)
                      .+..++++|+++....+..  ++.......      ......+..      ++........++++   .....+...++.
T Consensus       202 ~~~~~~~~E~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~------~~~~~~l~~~l~~~---~i~~~l~fifl~  264 (468)
T TIGR00788       202 LFVSNLSKERRAFVRPRIG--TYLEMNMAL------LTLGVLANV------KVQILGLRGAIQLL---EIAKPLIFIFLS  264 (468)
T ss_pred             HHHHHhccccccccccccc--ccchhhhhh------hhhhHHHHH------HHHHHHHHHHHhcH---HHHHHHHHHHHH
Confidence            6666778886421111000  000000000      000000000      00000111222221   111111111110


Q ss_pred             HhhhHHHHHH-hHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          247 QVTGINVIAF-YAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       247 ~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      .......... +. ..-+..|+++.+.+......+++.+++....+.  +.+|++.|+++.++.
T Consensus       265 ~~~~~~~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~--~~~~~~~r~~l~~~~  325 (468)
T TIGR00788       265 YANLPGASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDR--FLKTFPYRLLFGVTT  325 (468)
T ss_pred             HhhcCCCCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHH--HHhhCCHHHHHHHHH
Confidence            1111111111 11 111456999999999999999999999999998  889999999877653

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.63  E-value=1.6e-13  Score=120.28  Aligned_cols=147  Identities=17%  Similarity=0.213  Sum_probs=116.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh-CchhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHhhc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAV-NVYMLIFGRLLLGVG   97 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~   97 (310)
                      .++.+++|+++.+.+.+.+.+.....++++++|+++||+ |||++++++.++..++.++.+... +...+.++..+.+++
T Consensus        34 ~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG  113 (493)
T PRK15462         34 LYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCG  113 (493)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence            445667899999999999999999999999999999999 999999999999999987766543 222333444444455


Q ss_pred             ccccccchhhhhhhccccc--chhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHH
Q 021634           98 VGFANQSVPLYLSEMAPAR--YRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG  169 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~  169 (310)
                      .|...+...++++|.+|++  +|..+.++.+.+.++|..++|.+.+++.+   ..||++.|.+.++..++..+.
T Consensus       114 ~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~---~~Gw~~~F~iaaigm~l~li~  184 (493)
T PRK15462        114 YGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE---EYSWAMGFGLAAVGMIAGLVI  184 (493)
T ss_pred             cccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh---hhChHHHHHHHHHHHHHHHHH
Confidence            6666677788999999875  68999999999999999999999888764   357999998876644444433

>PRK11462 putative transporter; Provisional

Probab=99.62  E-value=6.7e-14  Score=123.41  Aligned_cols=246  Identities=10%  Similarity=0.003  Sum_probs=153.1

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhh----hCchhHH-HHHHHHHHHHHHHhhhhhh------HHHHHH
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA----FGRKPSV-LMGGAAFLAGSALGGAAVN------VYMLIF   89 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~-~~~~~~~~~~~~~~~~~~~------~~~l~~   89 (310)
                      ...+.+|+++..+|.+..+.-+.-++.-|+.|.++||    +|||+.. +++....+++.+++...++      ...+.+
T Consensus        35 fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~  114 (460)
T PRK11462         35 FYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAI  114 (460)
T ss_pred             HHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence            3456789999999999999999999999999999995    7876554 4566777777666544432      334455


Q ss_pred             HHHHHhhcccccccchhhhhhhccc-ccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCC----CchhHHHHHhhHHHHH
Q 021634           90 GRLLLGVGVGFANQSVPLYLSEMAP-ARYRGAINNGFQFSIGIGALAANFINYGTEQIKG----GWGWRVSLALAAVPAS  164 (310)
Q Consensus        90 ~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~wr~~~~~~~~~~~  164 (310)
                      ..++..++.........++..|..+ +++|++..++...+..+|..+++.+...+....+    ..+|+....+.+++.+
T Consensus       115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~  194 (460)
T PRK11462        115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF  194 (460)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence            6667788888888888899999987 6899999999998888887777666443322211    2368887777777665


Q ss_pred             HHHHHhhc-ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHH
Q 021634          165 ILTLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIP  243 (310)
Q Consensus       165 ~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (310)
                      +.....+. .+|.++..  +++                                .+.+...+..++++..+..    ...
T Consensus       195 i~~~i~~~~~kE~~~~~--~~~--------------------------------~~~~~~l~~~~~Nk~~~~l----~~~  236 (460)
T PRK11462        195 MMLAFCFFTTKERVEAP--PTT--------------------------------TSMREDLRDIWQNDQWRIV----GLL  236 (460)
T ss_pred             HHHHHHHhcceeccCCC--ccC--------------------------------CCHHHHHHHHhCChHHHHH----HHH
Confidence            55544433 45532110  000                                0001112233333222222    222


Q ss_pred             HHHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhh
Q 021634          244 FFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDI  306 (310)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~  306 (310)
                      .+..............++.+...-++...+.+.....++++++.+++++  +.||+++|+.+.
T Consensus       237 ~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~--l~~r~gkk~~~~  297 (460)
T PRK11462        237 TIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKP--LTDWKCKVTIFW  297 (460)
T ss_pred             HHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHhChHHHHH
Confidence            2222222222222333333323222334445666777888889999999  999999998765

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.62  E-value=1.1e-14  Score=133.35  Aligned_cols=141  Identities=16%  Similarity=-0.014  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhhc
Q 021634           33 LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEM  112 (310)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~  112 (310)
                      ......+..++..++.++.|+++||+|||++++++.++.++++++.+++++...+++.+++.|++.++.++....+++|+
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl  676 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVEL  676 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556677789999999999999999999999999999999999988888888888888999988888888999999999


Q ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCc
Q 021634          113 APARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETP  177 (310)
Q Consensus       113 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~  177 (310)
                      +|++.|++++++......+|.+++|.+++.+...    +...++++.++..++..++.+++||+.
T Consensus       677 ~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~----~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       677 YPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI----TKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999999999999999998766542    245677777777777777777789874

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.61  E-value=2.9e-14  Score=119.12  Aligned_cols=192  Identities=13%  Similarity=0.084  Sum_probs=140.3

Q ss_pred             hhhhhHHHHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCC----------
Q 021634           79 GAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG----------  148 (310)
Q Consensus        79 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----------  148 (310)
                      +...+++.++++-++.|.|.+..++....++++..|+|++++.+++.+.++++|..++|.++..+.....          
T Consensus         5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            3457899999999999999999999999999999999999999999999999999999999886653210          


Q ss_pred             ---CchhHHHHHhhHHHHHHHHHHhhc--ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccch
Q 021634          149 ---GWGWRVSLALAAVPASILTLGALF--LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHP  223 (310)
Q Consensus       149 ---~~~wr~~~~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (310)
                         ..+|+++|++.+.+.++..+.+.+  +||..+     ++ .++..                       .++.   ..
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~-~~~~~-----------------------~~~~---~~  132 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----AD-VARVS-----------------------SGDT---TQ  132 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cc-ccccc-----------------------cccc---cc
Confidence               137999998766665555544444  454311     00 00000                       0000   00


Q ss_pred             hhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHH---cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhc
Q 021634          224 FKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRT---IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVR  300 (310)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g  300 (310)
                      .++.    .+++..+...+..+...........|.+.|+++   .|+++++++...+....+.++|++++++  +.||++
T Consensus       133 ~~~~----~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~--l~~r~g  206 (310)
T TIGR01272       133 KTSA----FQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSA--VMPMIS  206 (310)
T ss_pred             hhhH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhC
Confidence            0111    123334445566666666777889999999964   3899999999999999999999999999  999999


Q ss_pred             cchhhhhc
Q 021634          301 WRKLDIYT  308 (310)
Q Consensus       301 ~r~~~~~~  308 (310)
                      +|+.+.++
T Consensus       207 ~~~~l~~~  214 (310)
T TIGR01272       207 QGRYLAFN  214 (310)
T ss_pred             HHHHHHHH
Confidence            98877654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.61  E-value=2.4e-14  Score=124.86  Aligned_cols=149  Identities=15%  Similarity=0.179  Sum_probs=124.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhh----hHHHHHHHHHHHhhcccccccc
Q 021634           29 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV----NVYMLIFGRLLLGVGVGFANQS  104 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~  104 (310)
                      +.++.+...++..++..++.++.|+++||+|||+++..+.++..++..+.....    +.+.+++.+++.|++.+...+.
T Consensus       249 ~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~  328 (418)
T TIGR00889       249 VVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNIS  328 (418)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            346779999999999999999999999999999999999999888876665532    3456777899999998888888


Q ss_pred             hhhhhhhcccccchhhhhhHHH-HHHHHHHHHHHHHHhhhcccCCC---chhHHHHHhhHHHHHHHHHHh-hcccCCc
Q 021634          105 VPLYLSEMAPARYRGAINNGFQ-FSIGIGALAANFINYGTEQIKGG---WGWRVSLALAAVPASILTLGA-LFLPETP  177 (310)
Q Consensus       105 ~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~---~~wr~~~~~~~~~~~~~~~~~-~~~~es~  177 (310)
                      ...++.|++|+++|+++.++.+ ....+|..++|.+++.+.+..+.   +||+..|.+.+++.++..+.. ++++|+.
T Consensus       329 ~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       329 GSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            8899999999999999999997 67889999999999988776443   579999998887777766555 4477764

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.61  E-value=7.2e-17  Score=143.16  Aligned_cols=272  Identities=15%  Similarity=0.180  Sum_probs=3.0

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-----------------
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----------------   81 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----------------   81 (310)
                      .+++++.|+++.++.|++.+.+-++..+..++..++.+|..|-+.+-.|.++.+++++++++-                 
T Consensus        26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~  105 (539)
T PF03137_consen   26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG  105 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence            367999999999999999999999999999999999999888889999999999998876641                 


Q ss_pred             ---------------------------------hhHHHHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHH
Q 021634           82 ---------------------------------VNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFS  128 (310)
Q Consensus        82 ---------------------------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  128 (310)
                                                       .-+..+++++++.|+|....+++..+|+-|..++++-+...|++...
T Consensus       106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~  185 (539)
T PF03137_consen  106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM  185 (539)
T ss_dssp             ----------------------------------------------SSS-------------------------------
T ss_pred             ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence                                             01356778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCC---------------Cc----hhHHHHHhhHHHHHHHHHHhhcccCCchhhHhccCcHHH
Q 021634          129 IGIGALAANFINYGTEQIKG---------------GW----GWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQK  189 (310)
Q Consensus       129 ~~~g~~~~~~~~~~~~~~~~---------------~~----~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~  189 (310)
                      ..+|.++|..+++.+.....               +-    .|..-|++.++..++..+..+++|++-+...+..+   +
T Consensus       186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~---~  262 (539)
T PF03137_consen  186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQE---E  262 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccc---h
Confidence            99999999888876553210               00    25445566666666666666667765332211000   0


Q ss_pred             HHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhh---hccccchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-Hc
Q 021634          190 AKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKK---IIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TI  265 (310)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  265 (310)
                      .+...++.  + +  ...++.+++ +..+......++   .+++..+++.++...+..........++..|.|.|+| ++
T Consensus       263 ~~~~~~~~--~-~--~~~~~~~~~-~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF  336 (539)
T PF03137_consen  263 KESSERKE--E-D--SDKDSFKDP-KSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQF  336 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhcch--h-h--hhhhccccc-ccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            00000000  0 0  000000000 000001122233   3446677888888888888888888999999999996 55


Q ss_pred             CCCchhHHHHHHHHHh-hhhhhhhHHHHHHHHHHhcc
Q 021634          266 GLGRLKVCQLSKWIEC-GGSIGFGRNMWVKWMNRVRW  301 (310)
Q Consensus       266 g~~~~~~~~~~~~~~~-~~~~g~~~~~~~~l~d~~g~  301 (310)
                      +.++.++..+.....+ ++.+|.+++|+  +++|++-
T Consensus       337 ~~sas~A~~l~G~v~ip~~~~G~llGG~--ivkk~kl  371 (539)
T PF03137_consen  337 GLSASQASLLTGIVSIPGAALGILLGGY--IVKKFKL  371 (539)
T ss_dssp             -------------------------------------
T ss_pred             CCCHHHHHHHHhhhhcchhheehheEEE--EEEEecC
Confidence            9999999888877654 67788899999  8888743

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.60  E-value=4.7e-14  Score=118.08  Aligned_cols=248  Identities=12%  Similarity=0.075  Sum_probs=174.0

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh------hhHH--HHHHHHHH
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA------VNVY--MLIFGRLL   93 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------~~~~--~l~~~r~l   93 (310)
                      .+.-+| +.+..-|++.++.+.+....+.+-|+.||+|-|...+++..+.++++.+-..+      +.++  ..+.+..+
T Consensus        71 ~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~i  149 (480)
T KOG2563|consen   71 VNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSI  149 (480)
T ss_pred             HHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHH
Confidence            334445 67778899999999999999999999999999999999999999999886654      3455  67788999


Q ss_pred             HhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC---CCchhHH--HHHhhHHHHHHHHH
Q 021634           94 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK---GGWGWRV--SLALAAVPASILTL  168 (310)
Q Consensus        94 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~wr~--~~~~~~~~~~~~~~  168 (310)
                      .+...-.....-..+..-||++++|+.+..+-.++..+|..++.++...+....   ++..|..  .|+...++..+.+.
T Consensus       150 aa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~  229 (480)
T KOG2563|consen  150 AAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLA  229 (480)
T ss_pred             HHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence            998887777777788899999999999999988888888888888877666544   2345654  34444444444333


Q ss_pred             Hh-hcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHH
Q 021634          169 GA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQ  247 (310)
Q Consensus       169 ~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (310)
                      +. +..++.|+.+....+    +.+                       ++.....+.++.+++    +.+....+.+...
T Consensus       230 l~~~~~~~~P~tPps~s~----~~~-----------------------~~~~f~~si~~~~~n----~~F~il~~~ygi~  278 (480)
T KOG2563|consen  230 LVLFVFTKKPPTPPSASQ----AAL-----------------------QDASFPKSIKSCFKN----RQFIILAICYGIG  278 (480)
T ss_pred             HHHHhcCCCCCCCCchhH----hhh-----------------------hcCcHHHHHHHHHcC----ccHHHHHHHHhhh
Confidence            33 334554443222111    000                       001112233344433    4455555555555


Q ss_pred             hhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccch
Q 021634          248 VTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRK  303 (310)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~  303 (310)
                      ...++.....+-..+.-.|++...+|+......++++++.++.+.  +.||.+.-+
T Consensus       279 ~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gi--i~Dktk~fk  332 (480)
T KOG2563|consen  279 LGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGI--IADKTKKFK  332 (480)
T ss_pred             HHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHh--hhhhhhhHH
Confidence            556666666655445555788889999999999999999999999  999976533

>PRK09848 glucuronide transporter; Provisional

Probab=99.59  E-value=8.6e-14  Score=122.73  Aligned_cols=249  Identities=11%  Similarity=0.030  Sum_probs=142.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh----CchhHH-HHHHHHHHHHHHHhh-h----hh--hHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF----GRKPSV-LMGGAAFLAGSALGG-A----AV--NVYML   87 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~----Grr~~~-~~~~~~~~~~~~~~~-~----~~--~~~~l   87 (310)
                      .++++.+|++..++|.+.+...+..++..++.|+++||.    |||+.. ..+.+...+..++.. .    ++  ..+..
T Consensus        33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (448)
T PRK09848         33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA  112 (448)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH
Confidence            567888899999999999999999999999999999996    777655 555554444444321 1    11  12233


Q ss_pred             HHHHHHHhhcccccccchhhhhhhcccc-cchhhhhhHHHHHH-----HHHHHHHHHHHhhhcccCCCchhHHHHHhhHH
Q 021634           88 IFGRLLLGVGVGFANQSVPLYLSEMAPA-RYRGAINNGFQFSI-----GIGALAANFINYGTEQIKGGWGWRVSLALAAV  161 (310)
Q Consensus        88 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~  161 (310)
                      .+..++.+++.+...+...++..|..++ ++|.+..+.-..+.     .++..++|.++....... ..+|.....+.++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~-~~~~~~~~~~~~v  191 (448)
T PRK09848        113 YLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEM-VSVYHFWTIVLAI  191 (448)
T ss_pred             HHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCch-hhhHHHHHHHHHH
Confidence            4455677777777777777777776644 67888766654432     344555565544322110 0122212222233


Q ss_pred             HHHHHHHHh-hcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHH
Q 021634          162 PASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAM  240 (310)
Q Consensus       162 ~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (310)
                      +.++..+.. ...||+++.   +.+                               +......+++.++++.    +...
T Consensus       192 ~~~~~~~~~~~~~~e~~~~---~~~-------------------------------~~~~~~~~~~l~~n~~----f~~~  233 (448)
T PRK09848        192 AGMVLYFICFKSTRENVVR---IVA-------------------------------QPSLKISLQTLKRNRP----LFML  233 (448)
T ss_pred             HHHHHHHHHHcCcEeccCC---Ccc-------------------------------CCCHHHHHHHHhCCch----HHHH
Confidence            333332222 235554210   000                               0000112334444332    3333


Q ss_pred             HHHHHHHhhhHHHHHHhHHHHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          241 AIPFFQQVTGINVIAFYAPLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      .+..+.............|+++++. |.++...+.......++.+++.++.++  +.||+|+|+.+.+|.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~r~g~~~~~~~g~  301 (448)
T PRK09848        234 CIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPG--MVARIGKKNTFLIGA  301 (448)
T ss_pred             HHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCcHHHHHHHH
Confidence            3333333344455566677777654 766655555555445667778888888  999999999887653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.59  E-value=7.7e-13  Score=116.07  Aligned_cols=248  Identities=17%  Similarity=0.168  Sum_probs=169.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHH-HHHHHHHHHHHhhhh--hhHHHHHHHHHHHhhcccccccchhh
Q 021634           31 QLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLM-GGAAFLAGSALGGAA--VNVYMLIFGRLLLGVGVGFANQSVPL  107 (310)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~-~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~  107 (310)
                      +..++..++..+..++..|+.|.++|+-|+||.++. ...+..+++....+.  .+++...+.-++.-++.+.......+
T Consensus        70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna  149 (477)
T PF11700_consen   70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNA  149 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445788899999999999999999999997766554 444455556655553  34444445556666777788888899


Q ss_pred             hhhhcccccch--------------------------hhhhhHHHHHHHHHHHHHHHHHhhhcccCC-----CchhHHHH
Q 021634          108 YLSEMAPARYR--------------------------GAINNGFQFSIGIGALAANFINYGTEQIKG-----GWGWRVSL  156 (310)
Q Consensus       108 ~~~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----~~~wr~~~  156 (310)
                      ++.|..+++++                          ++..+.-.....+|.++.-.+...+....+     ..+-|..+
T Consensus       150 ~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~  229 (477)
T PF11700_consen  150 YLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAF  229 (477)
T ss_pred             HhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHH
Confidence            99999999888                          888888777777887777666554432222     23468888


Q ss_pred             HhhHHHHHHHHHHh-hcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhH
Q 021634          157 ALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQ  235 (310)
Q Consensus       157 ~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (310)
                      .+.++.-++..+.. +++||.|+....+.. .+-.....+                           ...+.+|+..+.+
T Consensus       230 ~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~-~~~~~~g~~---------------------------~l~~t~k~~~~~~  281 (477)
T PF11700_consen  230 LIVALWWLVFSIPLFLWLPDRPGPRPLPSG-SSYLRFGFK---------------------------RLWRTFKEIRKLR  281 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCCCCCcc-hhHHHHHHH---------------------------HHHHHHHHHHhCh
Confidence            88777766655554 557887642111110 000011111                           1112222222334


Q ss_pred             HHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccc--hhhhhc
Q 021634          236 LLMAMAIPFFQQVTGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR--KLDIYT  308 (310)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r--~~~~~~  308 (310)
                      ......+.++...-+.+.+......|.+ ++|+++.+...+.....+.+++|.++.++  +.||+|.|  ++++++
T Consensus       282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~--l~~r~g~k~~~~l~~~  355 (477)
T PF11700_consen  282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGW--LQDRFGPKTKRTLLIS  355 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCchhHHHHHH
Confidence            4455666666666778888888888886 66999999999999999999999999999  99999999  666554

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.57  E-value=1.7e-13  Score=117.41  Aligned_cols=254  Identities=15%  Similarity=0.115  Sum_probs=176.7

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhh----hCch-hHHHHHHHHHHHHHHHhhhhhh------HHHHHH
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA----FGRK-PSVLMGGAAFLAGSALGGAAVN------VYMLIF   89 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~l~~   89 (310)
                      ...+.+|+++..+|.+..+.=+.-++.-|+.|.++||    +||+ +.++.+.+..++.+.++..+++      .....+
T Consensus        38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~v  117 (467)
T COG2211          38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALV  117 (467)
T ss_pred             HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHH
Confidence            3456789999999999999999999999999999995    7865 5556677888888888777653      344556


Q ss_pred             HHHHHhhcccccccchhhhhhhccc-ccchhhhhhHHHHHHHHHHHHHHHHHhhhcc----cCCCchhHHHHHhhHHHHH
Q 021634           90 GRLLLGVGVGFANQSVPLYLSEMAP-ARYRGAINNGFQFSIGIGALAANFINYGTEQ----IKGGWGWRVSLALAAVPAS  164 (310)
Q Consensus        90 ~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~wr~~~~~~~~~~~  164 (310)
                      ...+.+++......+..++..|+.+ ++||.+..+.-+.+..+|.++...+...+..    -....||+....+.++++.
T Consensus       118 tY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~  197 (467)
T COG2211         118 TYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGV  197 (467)
T ss_pred             HHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence            7888999999999999999999975 5899999999888888886665554433322    2224589998888888888


Q ss_pred             HHHHHhhc-ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHH
Q 021634          165 ILTLGALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIP  243 (310)
Q Consensus       165 ~~~~~~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (310)
                      +..+.+++ .+|.+.....                                 .+++.+.++++.+....+++.+....+.
T Consensus       198 i~~l~~~~~v~ER~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~Nrp~~~~l~~  244 (467)
T COG2211         198 ILLLFCFFNVKERVVETQP---------------------------------TKTGVKLKLKDSFLLIFKNRPLLLLLLM  244 (467)
T ss_pred             HHHHHHHHHhhcccCcccc---------------------------------CcccccccHHHHHHHHHccchHHHHHHH
Confidence            77776665 6665431100                                 0001122233222222222333333344


Q ss_pred             HHHHhhhHHHHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          244 FFQQVTGINVIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      .++...+.+.......+|.+- .|.+.............+.+++.++...  +.+|+|+|+++.++.
T Consensus       245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~--L~~~~gkk~~~~~~~  309 (467)
T COG2211         245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPR--LVKKFGKKKLFLIGL  309 (467)
T ss_pred             HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhchHHHHHHHH
Confidence            555555566666666666654 3777777777777777777777888888  999999999988764

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.55  E-value=9.3e-15  Score=130.35  Aligned_cols=265  Identities=15%  Similarity=0.158  Sum_probs=198.5

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-----------------
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----------------   81 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----------------   81 (310)
                      -..+++.|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-+|.++.+++++++++.                 
T Consensus       120 IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~  199 (735)
T KOG3626|consen  120 ITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQS  199 (735)
T ss_pred             hhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhcc
Confidence            367889999999999999999999999999999999999999999999999999999987752                 


Q ss_pred             ---h---------------------------h----HH-HHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHH
Q 021634           82 ---V---------------------------N----VY-MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQ  126 (310)
Q Consensus        82 ---~---------------------------~----~~-~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  126 (310)
                         +                           +    ++ .++++.++.|+|..+.++...+|+-|...+++-+..+|+..
T Consensus       200 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~  279 (735)
T KOG3626|consen  200 VENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILY  279 (735)
T ss_pred             ccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHH
Confidence               0                           0    23 56678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcccCCCc----------------hhHHHHHhhHHHHHHHHHHhhcccCCchhhHhccCcHHHH
Q 021634          127 FSIGIGALAANFINYGTEQIKGGW----------------GWRVSLALAAVPASILTLGALFLPETPNSLIQRKSDHQKA  190 (310)
Q Consensus       127 ~~~~~g~~~~~~~~~~~~~~~~~~----------------~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~  190 (310)
                      ....+|.++|-+++.++......+                .|..-|++.+.+.++..+..+++|...+...++.+  ++.
T Consensus       280 ~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~--~~~  357 (735)
T KOG3626|consen  280 SMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKR--ARD  357 (735)
T ss_pred             HHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccch--hhh
Confidence            999999999999988776532111                36666777788878777888888876432211100  000


Q ss_pred             HHHHHHhcCCcchHHHHHHHHHhhhccccccchhh---hhccccchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHH-HcC
Q 021634          191 KLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFK---KIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFR-TIG  266 (310)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g  266 (310)
                      .+.   ...+++          ....+.......+   +.+++...+++++...+........+.++..|+|.|++ ++|
T Consensus       358 ~~~---~k~~~~----------~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg  424 (735)
T KOG3626|consen  358 LHV---LKTESG----------GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFG  424 (735)
T ss_pred             hcc---cccccc----------cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcC
Confidence            000   000000          0001111111222   33445566788888889988999999999999999995 569


Q ss_pred             CCchhHHHHHHHHHh-hhhhhhhHHHHHHHHHHhc
Q 021634          267 LGRLKVCQLSKWIEC-GGSIGFGRNMWVKWMNRVR  300 (310)
Q Consensus       267 ~~~~~~~~~~~~~~~-~~~~g~~~~~~~~l~d~~g  300 (310)
                      .++..+..+.....+ +..+|.+++|+  ++.|+.
T Consensus       425 ~sas~An~l~G~i~vp~~~~Gi~lGG~--iikkfk  457 (735)
T KOG3626|consen  425 ISASLANILTGSIGVPAAAVGIFLGGL--IIKKFK  457 (735)
T ss_pred             CCHHHHHHHhhhhhhhhhhhhhhccce--eeeeec
Confidence            999999999866544 46788889999  888864

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.54  E-value=1.6e-13  Score=118.89  Aligned_cols=152  Identities=15%  Similarity=0.128  Sum_probs=124.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      .+++++++.++.+.+++.+...++..++.++.|+++||+|||+.+..+.....+........++.+.+++.+++.+++.+
T Consensus       241 ~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g  320 (393)
T PRK15011        241 LFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIG  320 (393)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            34567789999999998888888888999999999999999998887766666555555556778878888988888777


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccC
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  175 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  175 (310)
                      ...+....+..|.+|+ +|++++++++....+|..+++.+++.+.+.   .+|+..+++.+++.++..+..++.||
T Consensus       321 ~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        321 ILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI---WNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            7777777888999875 599999999988999999999998877653   47999999888888877777777765

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.51  E-value=1.4e-12  Score=110.75  Aligned_cols=251  Identities=17%  Similarity=0.124  Sum_probs=133.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHH--HHHHHHh-hhh----hhHH-HHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAF--LAGSALG-GAA----VNVY-MLIFGR   91 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~--~~~~~~~-~~~----~~~~-~l~~~r   91 (310)
                      ..++++.|+|.+++|.+.++..+...+.+++.|.++||.|.||-++......  ..+.+.. .+.    .|.+ ..+++-
T Consensus        32 iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~  111 (412)
T PF01306_consen   32 IWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGG  111 (412)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTT
T ss_pred             HHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455667999999999999999999999999999999999766554433222  2222222 222    2221 122222


Q ss_pred             HHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh
Q 021634           92 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  171 (310)
Q Consensus        92 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  171 (310)
                      +..|++.....++.-++..++..  +.+.-.|=.-+..++|..++..+++.+...    +-+..||+....+++..++.+
T Consensus       112 i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~~G~L~~i----~p~~~fwi~s~~~~il~lll~  185 (412)
T PF01306_consen  112 IYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLLAGILFNI----NPNIIFWIASAAAIILLLLLL  185 (412)
T ss_dssp             TTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHHhheeeee----CccHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444333331  122233334456666766666776655542    345677776666555554444


Q ss_pred             c-ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhh
Q 021634          172 F-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTG  250 (310)
Q Consensus       172 ~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (310)
                      + -|+.++.....+.+                             .+++++.+.++..+. .+.+.++.+.+........
T Consensus       186 ~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~l-~k~~~fw~~~l~v~g~~~~  235 (412)
T PF01306_consen  186 LLKPDVPPQAEVADAL-----------------------------GAKKDKVSLKDVLSL-FKMRNFWFFVLFVIGVAAI  235 (412)
T ss_dssp             SS---SSSSS-SSTTS-----------------------------SS------HHHHHHH-TTSHHHHHHHHHHHHHHHH
T ss_pred             HcCCcCchhhhhhccc-----------------------------ccCCCCCcHHHHHHH-hcchhHHHHHHHHHHHHHH
Confidence            4 34433222111110                             000111122333221 2223333333333333344


Q ss_pred             HHHHHHhHHHHHHHc----CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          251 INVIAFYAPLLFRTI----GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       251 ~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      +..+....+.|..+.    +.++...+.+.+...+..++.-....+  +.+|+|.|+.++++
T Consensus       236 Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~--li~rig~k~~Llla  295 (412)
T PF01306_consen  236 YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPW--LINRIGAKNLLLLA  295 (412)
T ss_dssp             HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHH--HHHhcChHhHHHHH
Confidence            556655566666554    334566788888888888888899999  99999999988764

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.51  E-value=1.5e-12  Score=111.93  Aligned_cols=162  Identities=14%  Similarity=0.129  Sum_probs=127.8

Q ss_pred             cccccccc-ccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCc-hhHHHHHHHHHHHHHHHh-hh---hh-hHHHHHH
Q 021634           17 KEDTKISN-YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR-KPSVLMGGAAFLAGSALG-GA---AV-NVYMLIF   89 (310)
Q Consensus        17 ~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr-r~~~~~~~~~~~~~~~~~-~~---~~-~~~~l~~   89 (310)
                      ...|++++ |.+.+.+..|++.++..++.+++++++|+++.|.+. |+.++.|.++..+++++. +.   .+ ..+.+++
T Consensus        56 s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~  135 (488)
T KOG2325|consen   56 SMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLV  135 (488)
T ss_pred             ecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            34566666 678889999999999999999999999999999996 888899999999998877 33   23 6778889


Q ss_pred             HHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCC-------c---hhHHHHHhh
Q 021634           90 GRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGG-------W---GWRVSLALA  159 (310)
Q Consensus        90 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~---~wr~~~~~~  159 (310)
                      +|++.|+|.|. ......|+++....++|.++++....+..+|..+||.++.++......       .   -+..+-|+.
T Consensus       136 ~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m  214 (488)
T KOG2325|consen  136 ARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLM  214 (488)
T ss_pred             HHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHH
Confidence            99999998654 677789999999999999999999998899999999888877654321       1   123455666


Q ss_pred             HHHHHHHHHHh-hcccCCchh
Q 021634          160 AVPASILTLGA-LFLPETPNS  179 (310)
Q Consensus       160 ~~~~~~~~~~~-~~~~es~~~  179 (310)
                      ++..++.++.. +++.|.++.
T Consensus       215 ~i~~i~~~v~i~~~f~E~~~~  235 (488)
T KOG2325|consen  215 AILWIIYIVIILFFFKEVYRG  235 (488)
T ss_pred             HHHHHHHHHHHHhheeecccC
Confidence            66666665554 447776653

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.50  E-value=5.1e-13  Score=113.64  Aligned_cols=147  Identities=22%  Similarity=0.263  Sum_probs=132.7

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchh-HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKP-SVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  102 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  102 (310)
                      +.++.++.+.++..+...++..++.++.+++.||+|||+ .+..+..+..++.+.....++.+...+..++.|++.+...
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  283 (352)
T cd06174         204 EVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAF  283 (352)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccc
Confidence            344889999999999999999999999999999999999 9999999999999999888888899999999999999999


Q ss_pred             cchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcc
Q 021634          103 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  173 (310)
Q Consensus       103 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  173 (310)
                      +....++.|..|+++|++.+++.+....+|..+++.+.+.+.+   ..+|+..+.+.+++.++..+..+++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~---~~~~~~~~~~~~~~~~i~~i~~~~~  351 (352)
T cd06174         284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD---TGGYGGVFLILAALALLAALLLLLL  351 (352)
T ss_pred             hhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCcchHHHHHHHHHHHHHHHheec
Confidence            9999999999999999999999999999999999999887764   3579999999888888776665443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.50  E-value=2.5e-13  Score=118.88  Aligned_cols=147  Identities=18%  Similarity=0.185  Sum_probs=122.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchh
Q 021634           27 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVP  106 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  106 (310)
                      +.+..+.+++.++..++..++.+++|+++||+|||+.+..+.++..++.++.+++++.+.+++.+++.|++.+...+...
T Consensus       258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  337 (420)
T PRK09528        258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF  337 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55667889999999999999999999999999999999999999998888888888999888999999998877777778


Q ss_pred             hhhhhcccccchhhhhhH-HHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCC
Q 021634          107 LYLSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPET  176 (310)
Q Consensus       107 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es  176 (310)
                      .++.|.+|++.|+...+. ++....+|..+++.+.+.+.+.   .||+..|.+.+++.++..+..++ ++++
T Consensus       338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~---~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS---IGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh---hCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            889999999999887655 6777889999999998877754   46999999877777665544443 4443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.49  E-value=4.7e-13  Score=116.61  Aligned_cols=154  Identities=14%  Similarity=0.064  Sum_probs=124.0

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+.....++.+...+.++.+.+.+..++.|++.+
T Consensus       244 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  323 (406)
T PRK11551        244 PSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVV  323 (406)
T ss_pred             HHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            34445678999999999999999999999999999999999999888777777776666667777777777888888877


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccC
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  175 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  175 (310)
                      ...+....++.|.+|+++|++..++.+....+|..++|.+.+.+.+..  .+|...++......++..+..+++.+
T Consensus       324 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (406)
T PRK11551        324 GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG--RSTVGVIGASIPVILVAALAALLLVS  397 (406)
T ss_pred             hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC--CchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            778888899999999999999999999999999999999988776542  24666666666555555555444433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.48  E-value=7.8e-13  Score=114.93  Aligned_cols=143  Identities=15%  Similarity=0.099  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhh
Q 021634           32 LLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSE  111 (310)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~  111 (310)
                      +.++..+.+.++..++.++.|++.||+|||+.+..+..+..++.+...+.++.+.+++.+++.|++.+..++.....+.|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~  329 (399)
T PRK05122        250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK  329 (399)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34566677888889999999999999999999998888888888877778888888888999999998888877788889


Q ss_pred             cccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCc
Q 021634          112 MAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETP  177 (310)
Q Consensus       112 ~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~  177 (310)
                      ..|+++|+++.++++....+|..+++.+.+.+.+.   .||+..+++.++..++..+..+++++++
T Consensus       330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW---FGYPSIFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999999999988888887766543   4699999988887777766666555443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.47  E-value=7.8e-13  Score=113.71  Aligned_cols=142  Identities=10%  Similarity=-0.019  Sum_probs=119.3

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHhhccc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNV--YMLIFGRLLLGVGVG   99 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~   99 (310)
                      ..++++.++.+.+.+.+...++..+++++.|+++||+|||+.+..+..+..++.+...+.++.  ..+....++.|++.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  310 (377)
T TIGR00890       231 YGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWG  310 (377)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhc
Confidence            346678888899999999999999999999999999999999999988888888777666543  234456778888888


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHH
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL  166 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~  166 (310)
                      ...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.   .||++.|.+.+++.++.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       311 GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE---IGFEYTFIVTGAFALTS  374 (377)
T ss_pred             cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh---hchhhHHHHHHHHHHHh
Confidence            87888888999999999999999999999999999999998877643   47999998877766554

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.46  E-value=1.6e-12  Score=111.94  Aligned_cols=151  Identities=16%  Similarity=0.178  Sum_probs=123.8

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccc
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF  100 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  100 (310)
                      .+.+++|.++.+.+++.+.......++.++.|++.||+|||+.+..+.++..++.....+.++.+.+.+.+++.|++.+.
T Consensus       225 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  304 (375)
T TIGR00899       225 LIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGI  304 (375)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45577899999999988887777888899999999999999998888777666665556677888888889999998888


Q ss_pred             cccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccC
Q 021634          101 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  175 (310)
Q Consensus       101 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  175 (310)
                      ..+....++.|..|+ +|+++.++++....+|..+++.+++.+.+.   .+|+..+++.++..++..+...+++|
T Consensus       305 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       305 LAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAER---WSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHheecC
Confidence            788888888998875 567999999999999999999998877653   46999999888887777766665543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.44  E-value=3.8e-12  Score=113.37  Aligned_cols=158  Identities=18%  Similarity=0.123  Sum_probs=113.0

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhh--h-HH-HHHHHHHHHh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV--N-VY-MLIFGRLLLG   95 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~-~~-~l~~~r~l~G   95 (310)
                      |.+.++.|.+.....+......+...++.++.++++||+|||+.++.+.++.+++.++.....  + .. ....+-++.+
T Consensus       295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~  374 (479)
T PRK10077        295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  374 (479)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence            445566788877777777778888899999999999999999999999998888877665431  1 11 2222334444


Q ss_pred             hcccc-cccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc---ccCCCchhHHHHHhhHHHHHHHHHHhh
Q 021634           96 VGVGF-ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE---QIKGGWGWRVSLALAAVPASILTLGAL  171 (310)
Q Consensus        96 ~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~wr~~~~~~~~~~~~~~~~~~  171 (310)
                      .+.+. ..+....++.|.+|+++|++++++......+|..+++.+...+.   ...++.+|++.|++.++.+++..+..+
T Consensus       375 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (479)
T PRK10077        375 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  454 (479)
T ss_pred             HHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence            44333 23667889999999999999999999998888888766654333   122345788888887777666655554


Q ss_pred             -cccCCc
Q 021634          172 -FLPETP  177 (310)
Q Consensus       172 -~~~es~  177 (310)
                       +.||+.
T Consensus       455 ~~~~e~~  461 (479)
T PRK10077        455 KFVPETK  461 (479)
T ss_pred             hccccCC
Confidence             467653

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.43  E-value=2.1e-12  Score=114.47  Aligned_cols=153  Identities=14%  Similarity=-0.023  Sum_probs=112.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHhhc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSAL--GGAAVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~r~l~G~~   97 (310)
                      .++++++|+|..+.++..+...++..++.+++|+++||+|||+.+.....+..++...  ....++.....+.+++.|++
T Consensus       283 ~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~  362 (467)
T PRK09556        283 VYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFL  362 (467)
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            4577889999999999999999999999999999999999998776654444433322  22334566666778888865


Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHHHHH-HHHHHHHHHhhhccc---------CCCchhHHHHHhhHHHHHHHH
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI-GALAANFINYGTEQI---------KGGWGWRVSLALAAVPASILT  167 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~---------~~~~~wr~~~~~~~~~~~~~~  167 (310)
                      .............|.+|++.||++.++.+....+ |..++|.+.+.+.+.         ....+|+..|++..+..++..
T Consensus       363 ~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~  442 (467)
T PRK09556        363 VFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCI  442 (467)
T ss_pred             HhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHH
Confidence            4333333345677999999999999999888776 768888887777661         013469999988777777665


Q ss_pred             HHhhc
Q 021634          168 LGALF  172 (310)
Q Consensus       168 ~~~~~  172 (310)
                      +..++
T Consensus       443 ~~~~~  447 (467)
T PRK09556        443 CLMAI  447 (467)
T ss_pred             HHHHH
Confidence            55544

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.43  E-value=2.8e-11  Score=99.72  Aligned_cols=232  Identities=15%  Similarity=0.158  Sum_probs=146.1

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  103 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  103 (310)
                      +++|+++.|++.+....+...++..++.|.++||+|||+.-+..+++..++++. -..++++.++++|++.|++.+..+.
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS  140 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFS  140 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999988864 4568899999999999999888877


Q ss_pred             chhhhh-hhc----ccccchhhhhhHHH-HHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCC
Q 021634          104 SVPLYL-SEM----APARYRGAINNGFQ-FSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPET  176 (310)
Q Consensus       104 ~~~~~~-~~~----~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es  176 (310)
                      .-.+.+ .|+    +|++..+...+... ..+++-.+.++.++-++.+..+ .|-..+|....++.++..+.... .+|+
T Consensus       141 ~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~-~g~vaPF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  141 AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG-FGPVAPFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHHHHhccccc
Confidence            776654 454    23333333333333 2333334444455444443222 23356777766666655554433 4554


Q ss_pred             chhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHH
Q 021634          177 PNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAF  256 (310)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (310)
                      +....++....++-                              +..++.+.+   .++.+.............+..+..
T Consensus       220 yg~~~~~~~~~~~~------------------------------~~a~~~i~~---d~ril~LG~~qslFE~smy~FVfl  266 (354)
T PF05631_consen  220 YGDTSSSSSLSGSF------------------------------REAWRAILS---DPRILLLGLIQSLFEGSMYLFVFL  266 (354)
T ss_pred             CCCcccccchHHHH------------------------------HHHHHHHHc---CchhHHHHHHHHHHHHHHHHheee
Confidence            32111000000000                              001122221   145556666667777777777777


Q ss_pred             hHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHH
Q 021634          257 YAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMW  292 (310)
Q Consensus       257 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~  292 (310)
                      |.|.+-. .+ ....-|..++...++.++|+.+...
T Consensus       267 WtPaL~~-~~-~~~P~GlIFssFM~a~MlGS~lf~~  300 (354)
T PF05631_consen  267 WTPALDP-DD-EELPLGLIFSSFMVAMMLGSSLFSR  300 (354)
T ss_pred             eeceecC-CC-CCCCchHHHHHHHHHHHHHHHHHHH
Confidence            7887651 11 2234677777777777777777755

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.41  E-value=1.3e-12  Score=116.74  Aligned_cols=140  Identities=11%  Similarity=-0.061  Sum_probs=107.4

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHhhcc
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA--VNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~   98 (310)
                      .+++++|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++..+..+.....  .+.+.+.+..++.+...
T Consensus       301 ~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (496)
T PRK03893        301 YLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLG  380 (496)
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHh
Confidence            3446889999999999999999999999999999999999999888877666655443332  33344444455544433


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHH
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPA  163 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~  163 (310)
                      ....+....++.|.+|+++|++++++.+....+|..++|.+++.+.+.   .+|+..+...+...
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~---~g~~~~~~~~~~~~  442 (496)
T PRK03893        381 QGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR---LDLGTALASLSFSL  442 (496)
T ss_pred             cccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc---CChHHHHHHHHHHH
Confidence            344566778899999999999999999999999999999998877754   46887775544433

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.41  E-value=4e-11  Score=100.37  Aligned_cols=251  Identities=13%  Similarity=0.104  Sum_probs=158.8

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhC-----chhHHHH-HHHHHHHHHHHhhhh-----h-------
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG-----RKPSVLM-GGAAFLAGSALGGAA-----V-------   82 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~-------   82 (310)
                      -+..|++++..-.+.+.+...+... ..+.+|+.||+.+     ||..+++ |..+...+..+..++     .       
T Consensus         5 VMIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    5 VMIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             hHHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            3556888888888888888877665 5899999999999     8866654 555555555444432     2       


Q ss_pred             hH--H--HHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHH--H
Q 021634           83 NV--Y--MLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVS--L  156 (310)
Q Consensus        83 ~~--~--~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~--~  156 (310)
                      +.  +  ...+.-.+.|+|.+...+...++++|..|+|+|+++.++.+....+|.+++..+.+.+.+...  .-|..  +
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s--~~rL~~v~  161 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS--PERLIQVI  161 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC--HHHHHHHH
Confidence            22  2  233457888999999999999999999999999999999999999999998888664443222  22322  2


Q ss_pred             HhhHHHHHHHHHHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHH
Q 021634          157 ALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQL  236 (310)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (310)
                      ...+++.+...+...+=.|.++.....                            .+.+++......+++.+.++..++.
T Consensus       162 ~~~a~i~~~l~~ia~wg~E~r~~~~~~----------------------------~~~~~~~~f~~a~~~~~~~~~a~~f  213 (403)
T PF03209_consen  162 QGVALIALLLNLIALWGQEPRRSRRAA----------------------------AAERPRPPFREAWRQVWASPQARRF  213 (403)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCccccc----------------------------CCCCCCccHHHHHHHHHhCCChhHH
Confidence            222333332223333323322110000                            0001111122345555555555555


Q ss_pred             HHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHH-Hhccchhhhhc
Q 021634          237 LMAMAIPFFQQVTGINVIAFYAPLLF-RTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMN-RVRWRKLDIYT  308 (310)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d-~~g~r~~~~~~  308 (310)
                      +..+++..+.    ++.-...+-.|- +-+|+++.+...++.....+..+|....++  +.. |.+++++-..|
T Consensus       214 ~~fl~l~t~a----~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~--~l~~~~~~~~~a~~G  281 (403)
T PF03209_consen  214 FVFLFLGTLA----FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGF--LLSRRLGKKRTAALG  281 (403)
T ss_pred             HHHHHHHHHH----HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCchHHHHHH
Confidence            5544444332    233333444444 445999999999999999999999999988  554 56666654443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK09952 shikimate transporter; Provisional

Probab=99.40  E-value=7.2e-12  Score=110.12  Aligned_cols=155  Identities=14%  Similarity=0.072  Sum_probs=113.3

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh---h-hhHHHHHHHHHHHhh
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA---A-VNVYMLIFGRLLLGV   96 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~-~~~~~l~~~r~l~G~   96 (310)
                      ++++++|.+.+....+.....+...++.++.|+++||+|||+.+..+.++..++.+....   . ++.+.+++..++.++
T Consensus       276 y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (438)
T PRK09952        276 YSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANI  355 (438)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            455677888877666666667777888999999999999999988887665554433322   1 234444455667778


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHH-HHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccC
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQ-FSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  175 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  175 (310)
                      +.+...+....++.|.+|++.|+...++.. .+..+|..++|.+.+.+.+..+ .+|+..+...++..++..+..+.++|
T Consensus       356 ~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~-~~~~~~~~~~~~~~~i~~v~~~~~~~  434 (438)
T PRK09952        356 AHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG-GSWHSVAIYLLAGCLISAMTALLMKD  434 (438)
T ss_pred             HHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHccc
Confidence            777778888899999999999998888844 4455788888988887755332 24888888777777777777666776


Q ss_pred             C
Q 021634          176 T  176 (310)
Q Consensus       176 s  176 (310)
                      +
T Consensus       435 ~  435 (438)
T PRK09952        435 N  435 (438)
T ss_pred             c
Confidence            4

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.40  E-value=5.5e-11  Score=99.44  Aligned_cols=249  Identities=14%  Similarity=0.080  Sum_probs=164.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchh-HHHHHHHHHHHHHHHhhhhhh--HH-HHHHHHHHHhhcccccccc
Q 021634           29 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKP-SVLMGGAAFLAGSALGGAAVN--VY-MLIFGRLLLGVGVGFANQS  104 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~-~~~~~~~~~~~~~~~~~~~~~--~~-~l~~~r~l~G~~~~~~~~~  104 (310)
                      +.+..+...++..+..++-+|+.|.++|+.|+|| .+-....+.+++.+...++++  ++ ..++.-.+..++.......
T Consensus        56 ~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vf  135 (438)
T COG2270          56 STAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVF  135 (438)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhee
Confidence            3456788889999999999999999999999655 445556666666666666654  44 4455678888888888899


Q ss_pred             hhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc---------------CCCchhHHHHHhhHHHHHHHHHH
Q 021634          105 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI---------------KGGWGWRVSLALAAVPASILTLG  169 (310)
Q Consensus       105 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~wr~~~~~~~~~~~~~~~~  169 (310)
                      ..+++.+..++++-++..+.-.....+|+.+.-+........               .+...-|..+.+.++--++..+.
T Consensus       136 yds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iP  215 (438)
T COG2270         136 YDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALP  215 (438)
T ss_pred             hhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhH
Confidence            999999999998888877775555555555443332111100               12234677777766666665555


Q ss_pred             hhc-ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHh
Q 021634          170 ALF-LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQV  248 (310)
Q Consensus       170 ~~~-~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (310)
                      .++ .+|.++-.   .........             ...+.          ..++++..++    +.+....+..+...
T Consensus       216 m~~~v~~~~~~~---~~~~~~l~~-------------g~k~L----------~~t~k~i~~~----~~i~~FLiA~~~~~  265 (438)
T COG2270         216 MILNVHDAEKIS---SPPPTALRN-------------GFKEL----------KSTFKEIRGR----KNLVLFLIARFFYI  265 (438)
T ss_pred             HHhccccccccc---ccchHHHHH-------------HHHHH----------HHHHHHHhcc----cchHHHHHHHHHHH
Confidence            444 55543210   000000000             01111          1122333322    23344445555555


Q ss_pred             hhHHHHHHhHHHHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          249 TGINVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       249 ~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      -+.+........+.. ++|++..+.........+.+++|+++.++  +.||+|.|+++..++
T Consensus       266 DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~--Ld~rfg~k~vl~~~l  325 (438)
T COG2270         266 DGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGF--LDERFGSKPVLMIGL  325 (438)
T ss_pred             hhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhCCceeehHHH
Confidence            577888888888886 77999999999999999999999999999  999999998877664

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.40  E-value=1.3e-13  Score=108.64  Aligned_cols=259  Identities=10%  Similarity=0.030  Sum_probs=161.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhh-hCchhHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHHHh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGG---AAVNVYMLIFGRLLLG   95 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l~G   95 (310)
                      .+...|.+++.++..++-+++..-..+-+.++|++.|| +|-|..-++-++...++.++.+   ..+.+|.+..+|++-|
T Consensus        68 ~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FG  147 (459)
T KOG4686|consen   68 IDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFG  147 (459)
T ss_pred             hhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeec
Confidence            34556667777788899999999999999999999996 6877766666666667766554   4689999999999999


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCC----chhHHHHHhhHHHHHHHHHHhh
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGG----WGWRVSLALAAVPASILTLGAL  171 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~wr~~~~~~~~~~~~~~~~~~  171 (310)
                      +|.-..-.....|..-|+..|+.+.++|+......+|..+--.+-.++.+..++    .+ .....+...+....+....
T Consensus       148 IGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~g-hT~LG~~l~~~~~tc~~sl  226 (459)
T KOG4686|consen  148 IGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVG-HTLLGLWLCFEVKTCKQSL  226 (459)
T ss_pred             cCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHHHH
Confidence            998877788889999999999999999999988888876544443322221110    00 0010000000000000000


Q ss_pred             cccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhH
Q 021634          172 FLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGI  251 (310)
Q Consensus       172 ~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (310)
                            ......+-..+.|+..+++-.+.               ..+  .....+   .....+.++.+...+++.....
T Consensus       227 ------ical~lg~~D~rAerilh~e~g~---------------~Ge--~pkLtd---v~~f~ppfw~~~iicv~yyva~  280 (459)
T KOG4686|consen  227 ------ICALSLGLSDDRAERILHLEEGF---------------LGE--EPKLTD---VNTFYPPFWVLVIICVLYYVAW  280 (459)
T ss_pred             ------HHHHHhhhhhhHHHHHHhhhcCc---------------ccC--Cccccc---ccccCccHHHHHHHHHHHHHHH
Confidence                  00001111111222111111110               000  111111   1112233444444445555555


Q ss_pred             HHHHHhHHHHHH-HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          252 NVIAFYAPLLFR-TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       252 ~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      ..+...-|.+++ +.|+|+..++...+.......+.+.+.+.  ++||+|++.+.+.
T Consensus       281 fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~--i~Dk~G~n~~wv~  335 (459)
T KOG4686|consen  281 FPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGA--ISDKYGFNLWWVA  335 (459)
T ss_pred             HHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHH--hHhhhcceehhHH
Confidence            667777788885 56999999999999988888888888898  9999999876553

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.39  E-value=1.3e-12  Score=115.38  Aligned_cols=143  Identities=9%  Similarity=-0.070  Sum_probs=116.0

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh--CchhHHHH--HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF--GRKPSVLM--GGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +++|.+..+.+++.++..++..+++++.|+++||.  ++|+...+  +.++.+++.++....++++.+++.+++.|++.+
T Consensus       269 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g  348 (455)
T TIGR00892       269 KDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFG  348 (455)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhc
Confidence            56799999999999999999999999999999984  34433333  334444555566677888888899999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHH
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL  168 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~  168 (310)
                      ...+....++.|.+|++++++..++++....+|..++|.+++.+.+..+  +|++.|++.++..++..+
T Consensus       349 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g--~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       349 SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK--NYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC--CcchHHHHhhHHHHHHHH
Confidence            8888889999999999999999999999999999999999887765432  588898887777665544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.37  E-value=4.3e-11  Score=102.16  Aligned_cols=150  Identities=22%  Similarity=0.258  Sum_probs=128.3

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh-CchhHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHhhcc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAV--NVYMLIFGRLLLGVGV   98 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~   98 (310)
                      ..+.+|+|+++..-+.+.+...--...+++|+++||+ |+|++++.|.++..+|.+..+.+.  +...++++-.+.++|.
T Consensus        52 ~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~  131 (498)
T COG3104          52 LGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGT  131 (498)
T ss_pred             ccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhcc
Confidence            3344779999999999998888889999999999997 999999999999999999998884  7888899999999999


Q ss_pred             cccccchhhhhhhccccc--chhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhccc
Q 021634           99 GFANQSVPLYLSEMAPAR--YRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP  174 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~  174 (310)
                      |..=+....++.|.+|++  +|-..++++.++.++|++++|.+.+.+.+.   .+|...|...++-....++..+..+
T Consensus       132 Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~---~g~~~gF~~aavGm~~gl~~f~~~~  206 (498)
T COG3104         132 GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN---YGWHVGFGLAAVGMIIGLVIFLLGR  206 (498)
T ss_pred             ccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHcc
Confidence            999999999999999864  356688889999999999999998877754   5699999888877777666655544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.37  E-value=8.6e-12  Score=110.71  Aligned_cols=155  Identities=16%  Similarity=0.088  Sum_probs=115.9

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh-----hh------hHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-----AV------NVYMLI   88 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~------~~~~l~   88 (310)
                      +.+.+++|.+..+.++......++..++.++.|+++||+|||+.+..+.++..++.++.++     .+      +...+.
T Consensus       308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (481)
T TIGR00879       308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIV  387 (481)
T ss_pred             HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHH
Confidence            4455677888888899999999999999999999999999999999888877777666552     11      222233


Q ss_pred             HHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHH
Q 021634           89 FGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL  168 (310)
Q Consensus        89 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~  168 (310)
                      ...++.+.......+....++.|.+|+++|+++.++......+|..+++.+.+.+.+.   .+|++.|++.++++++..+
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~i  464 (481)
T TIGR00879       388 FILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES---IGVGGVFIFFGGLNVLGLI  464 (481)
T ss_pred             HHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCccceehhHHHHHHHHHH
Confidence            3333333322333466667789999999999999999999999999999887766543   4688888888888777666


Q ss_pred             Hhhc-ccCCc
Q 021634          169 GALF-LPETP  177 (310)
Q Consensus       169 ~~~~-~~es~  177 (310)
                      ..++ .||++
T Consensus       465 ~~~~~~~~~~  474 (481)
T TIGR00879       465 FVYFFLPETK  474 (481)
T ss_pred             HHheecccCC
Confidence            6544 66653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.36  E-value=1.4e-11  Score=106.33  Aligned_cols=146  Identities=15%  Similarity=0.065  Sum_probs=115.2

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  101 (310)
                      ..++.|.++++.+.+.+...++..+++++.|++.||+|+|+.+..+.....++.....   +........++.|++....
T Consensus       226 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~  302 (381)
T PRK03633        226 YLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPALFILGAAGFTL  302 (381)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhH
Confidence            3345688999999999999999999999999999999999999888877777665443   2233345667778776677


Q ss_pred             ccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcc
Q 021634          102 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  173 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  173 (310)
                      .+.....+.|..|+++++...+.......+|..++|.+++.+.+.   .+|++.|.+.+.+.++..+..+..
T Consensus       303 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~  371 (381)
T PRK03633        303 YPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN---YSDNLLFIMIASVSFIYLLMLLRK  371 (381)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccHHHHHHHHHHHHHHHHHHhc
Confidence            888888889999988888888888888999999999998877654   468888888777776655554443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.36  E-value=1e-11  Score=108.53  Aligned_cols=153  Identities=12%  Similarity=0.052  Sum_probs=125.2

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  101 (310)
                      .++.+|.++.+.+++.+...++..++.++.+++.||.++++.+..+..+..++.++..+.++.+...++.++.|++.+..
T Consensus       250 ~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  329 (417)
T PRK10489        250 ADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAIS  329 (417)
T ss_pred             HHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            34448999999999999999999999999999999988888888888888888777777888887788889999888777


Q ss_pred             ccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHH-HHhhcccCCc
Q 021634          102 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT-LGALFLPETP  177 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~-~~~~~~~es~  177 (310)
                      .+....++.|..|++.|+++++++.....+|..+++.+.+.+.+.   .|++..+++.++..++.. +....+||.+
T Consensus       330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        330 SLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAM---MTPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHH---hchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            777788899999999999999999999999999999998877754   357777776665555443 4445566653

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.35  E-value=1.1e-11  Score=108.13  Aligned_cols=137  Identities=15%  Similarity=0.043  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhhc
Q 021634           33 LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEM  112 (310)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~  112 (310)
                      .+.+.++..++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+.+.+++.|++.+...+....++.+.
T Consensus       260 ~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (408)
T PRK09874        260 SGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYN  339 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHh
Confidence            45566677788889999999999999999999999888888777777778888888899999999998888888888999


Q ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634          113 APARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus       113 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      .|+++|++.++..+....+|..++|.+++.+.+.   .+|+..|++.++..++..+..++
T Consensus       340 ~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        340 SSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN---YGFRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             CCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998877643   46999999988887776665544

>PRK12382 putative transporter; Provisional

Probab=99.35  E-value=1.5e-11  Score=106.74  Aligned_cols=137  Identities=13%  Similarity=0.111  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhhc
Q 021634           33 LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEM  112 (310)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~  112 (310)
                      .+...+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++.+.+.++.++.|++.+...+.....+.|.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~  330 (392)
T PRK12382        251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR  330 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            45556677788889999999999999999999999888888888877788888888889999999888888888888999


Q ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634          113 APARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus       113 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      +|+++|+++.++++....+|..+++.+.+.+.+.   .||+..|.+.+++.++..+..++
T Consensus       331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS---FGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCchHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998877654   46999999888777766655443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.34  E-value=3.3e-11  Score=104.09  Aligned_cols=142  Identities=9%  Similarity=0.023  Sum_probs=124.0

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  103 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  103 (310)
                      +|+|.++.+.+.+.+...++..++.++.+++.||+|+|+.+.++.+...+..+..+++++.+.+++.+++.|+..+...+
T Consensus       233 ~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~  312 (382)
T TIGR00902       233 QAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHL  312 (382)
T ss_pred             HHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhhcccccchhhhhhHHH-HHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh
Q 021634          104 SVPLYLSEMAPARYRGAINNGFQ-FSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus       104 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                      ....++.+. |+++|++..++++ ...++|..+++.+++.+.+..   ++ ..|++.+.+.++..+..
T Consensus       313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~---g~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL---GA-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHHHHH
Confidence            999999998 9999999999986 577899999999999888653   45 45666666666554443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.34  E-value=4e-11  Score=103.93  Aligned_cols=148  Identities=14%  Similarity=0.076  Sum_probs=116.0

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHhhcc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSA-LGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      +.+.+++|.+..+.+++.+...++..+++++.|+++||+|||+... +..+..++.. +....++.+.+.++.++.|++.
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~  308 (390)
T PRK03545        230 PFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWGIAI  308 (390)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence            4455667899999999999999999999999999999999887544 4444444433 3345677777888888999987


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      +...+.....+.|..| ++|++++++++....+|..+++.+++.+.+.   .+++..+++.+++.++..+..+.
T Consensus       309 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~---~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        309 MCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH---LGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             hcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHH
Confidence            7666667777888766 6889999999999999999999998877754   57999999888877776655544

>PRK03699 putative transporter; Provisional

Probab=99.33  E-value=1.3e-11  Score=107.21  Aligned_cols=152  Identities=13%  Similarity=0.034  Sum_probs=122.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      +.+++++|+|+.+.+.+.+.+.++..++.++.|+++||+|||+.+.....+..+...+....++.+.+.+..++.|++.+
T Consensus       230 ~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~  309 (394)
T PRK03699        230 EYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSS  309 (394)
T ss_pred             HHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            44557789999999999999999999999999999999999999988877777766666667777777777788888877


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccC
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  175 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  175 (310)
                      ..++....+..|..| +++++..+.......+|..++|.+.+.+.+.   .||+..+++.+++.++..+.+.+.++
T Consensus       310 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (394)
T PRK03699        310 AIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAH---FGLQAALLTANGLYAVVFVMCILLGF  381 (394)
T ss_pred             HHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHH---hCchhhhhhhHHHHHHHHHHHHHHHH
Confidence            777777777778775 4567778888888889999999998877654   46889988888777777666655544

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.33  E-value=8.3e-11  Score=99.49  Aligned_cols=271  Identities=12%  Similarity=0.099  Sum_probs=172.9

Q ss_pred             cccccc-cccchhHHH-HHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhc
Q 021634           20 TKISNY-CKFDSQLLT-SFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        20 ~~i~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   97 (310)
                      |++.+. .|++.+|+. -+.-+..-.+.+..++...++|..+.|++++++.+...+...+..+.++...+-+..++.|++
T Consensus        28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~  107 (412)
T PF01770_consen   28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLA  107 (412)
T ss_pred             HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence            445554 788888864 555666667788889999999999999999999999999999999999999999999999998


Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCc
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETP  177 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~  177 (310)
                      .+. ..+..+|+-...|+++--++.+.......+|..++..++-.+... +..+++...++......+.++..+++|..+
T Consensus       108 ~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-~~~sy~~L~~isl~~~~~a~~~~~fLP~~~  185 (412)
T PF01770_consen  108 TAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-GGVSYFQLNYISLASVSLALLIALFLPMPK  185 (412)
T ss_pred             HHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            654 677788898888988888888888888888877777777755543 224677777776666666777778888766


Q ss_pred             hhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhcc-ccccchhhhh---ccccchhHHHHHHHHHHHHHhhhHHH
Q 021634          178 NSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTA-KTINHPFKKI---IQRKYRPQLLMAMAIPFFQQVTGINV  253 (310)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (310)
                      +....+++..++......+.+..++..+..++.++..+.. ......++.+   ++.-+.++.++...+.+....++++-
T Consensus       186 ~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~q  265 (412)
T PF01770_consen  186 RSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQ  265 (412)
T ss_pred             cccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHH
Confidence            5443332211111100000000000000000000000000 0001111122   22333445555556666666667777


Q ss_pred             HHHhHHHHHHHc---CCCchhHHHHHHHHHhhhhhhhhHHHH
Q 021634          254 IAFYAPLLFRTI---GLGRLKVCQLSKWIECGGSIGFGRNMW  292 (310)
Q Consensus       254 ~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~g~~~~~~  292 (310)
                      +..|.....++.   +-...-.|..-+...+.+.++.+..++
T Consensus       266 v~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~  307 (412)
T PF01770_consen  266 VINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGY  307 (412)
T ss_pred             HHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhH
Confidence            777777777766   333444566666667777777777777

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.31  E-value=7e-11  Score=103.85  Aligned_cols=154  Identities=11%  Similarity=0.103  Sum_probs=132.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCch--hHHHHHHHHHHHHHHHhhh--------hhhHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRK--PSVLMGGAAFLAGSALGGA--------AVNVYMLIF   89 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~   89 (310)
                      ...++++|++..+...+.-+..+..++|++++|++.||+|.|  ++++.+.+++.+..+...+        .++.+.+.+
T Consensus       306 i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~  385 (477)
T PF11700_consen  306 IYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWV  385 (477)
T ss_pred             HHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHH
Confidence            345668999999999999999999999999999999999999  8988888888666665555        577888889


Q ss_pred             HHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHH
Q 021634           90 GRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG  169 (310)
Q Consensus        90 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~  169 (310)
                      .-++.|++.|..++...++.+|..|+++.+..+|++....-....+||.+-+.+.+..+  +-|+.+....++.++.+++
T Consensus       386 ~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg--~~r~g~~~l~~lf~~gl~l  463 (477)
T PF11700_consen  386 LAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG--SQRYGFLFLLVLFLIGLIL  463 (477)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888887665  3567777767776666666


Q ss_pred             hhcccC
Q 021634          170 ALFLPE  175 (310)
Q Consensus       170 ~~~~~e  175 (310)
                      .+++++
T Consensus       464 l~~v~~  469 (477)
T PF11700_consen  464 LFFVDV  469 (477)
T ss_pred             Hhhccc
Confidence            666654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.29  E-value=2.5e-11  Score=105.01  Aligned_cols=142  Identities=14%  Similarity=0.105  Sum_probs=108.7

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHH--HHhhh--hhhHHHHHHHHHHHh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGS--ALGGA--AVNVYMLIFGRLLLG   95 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~--~~~~~--~~~~~~l~~~r~l~G   95 (310)
                      ..++++++.++.+.+...+...++..++.++.|+++||+|||+.+..+..+..+..  ....+  .++.+.+....++.|
T Consensus       244 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  323 (394)
T TIGR00883       244 TYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLA  323 (394)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            33456788899999999999999999999999999999999998776555444333  12222  245666677788889


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhH-HHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHH
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPA  163 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~  163 (310)
                      ++.+...+....++.|.+|+++|+++.++ .+.+..+|..++|.+++.+.+..+  +|+..++..++..
T Consensus       324 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g--~~~~~~~~~~~~~  390 (394)
T TIGR00883       324 LIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG--DWYAIGYYLAALA  390 (394)
T ss_pred             HHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC--cchhHHHHHHHHH
Confidence            88888889999999999999999999988 456677888899999887776433  2776665555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.29  E-value=3.4e-11  Score=104.66  Aligned_cols=136  Identities=16%  Similarity=0.025  Sum_probs=108.9

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHhhccc
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSA-LGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      .+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+..+..+ .....++.+.+.+..++.|++.+
T Consensus       264 ~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (405)
T TIGR00891       264 YLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQ  343 (405)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHc
Confidence            34567899999999999999999999999999999999999998887776533332 33344566666667777777777


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLAL  158 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~  158 (310)
                      ...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+.  |+..+..
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~--~~~~~~~  400 (405)
T TIGR00891       344 GIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDE--YGTALAS  400 (405)
T ss_pred             cchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc--cchhHHh
Confidence            77788888999999999999999999999999999999998888764331  5555443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.28  E-value=8e-11  Score=101.79  Aligned_cols=147  Identities=15%  Similarity=0.065  Sum_probs=105.5

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchh--HHH------HHHHHHHHHHHHhhhhhhHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKP--SVL------MGGAAFLAGSALGGAAVNVYMLIFGR   91 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~--~~~------~~~~~~~~~~~~~~~~~~~~~l~~~r   91 (310)
                      ..++++++.++.+.+++.+...++..++.++.|+++||+|||+  ...      .+.++..+........++.+......
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (399)
T TIGR00893       240 TYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALV  319 (399)
T ss_pred             HHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            3455678889999999999999999999999999999999996  111      11111111111222223444444444


Q ss_pred             HHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCch-hHHHHHhhHHHHHHHHHHh
Q 021634           92 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWG-WRVSLALAAVPASILTLGA  170 (310)
Q Consensus        92 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-wr~~~~~~~~~~~~~~~~~  170 (310)
                      .+.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.   .+ |+..+++.++..++..+..
T Consensus       320 ~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       320 ALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAAT---TGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             HHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccC---CCchhHHHHHHHHHHHHHHHHH
Confidence            44444444 6788899999999999999999999999999999999998777653   35 8888888777766655444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.28  E-value=8.7e-11  Score=101.86  Aligned_cols=151  Identities=16%  Similarity=0.055  Sum_probs=114.2

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHhhcccccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-AVNVYMLIFGRLLLGVGVGFAN  102 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~  102 (310)
                      +++|.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++...... .++...+  .-++.|++.+...
T Consensus       233 ~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~  310 (393)
T PRK09705        233 IEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAF  310 (393)
T ss_pred             HHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchH
Confidence            357899999999999999999999999999999999999998888777776654432 2222222  2245677777777


Q ss_pred             cchhhhhhhccc-ccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCch
Q 021634          103 QSVPLYLSEMAP-ARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPN  178 (310)
Q Consensus       103 ~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~  178 (310)
                      +.......+..+ +++|++..++.+....++..++|.+.+++.+..+  +|...+.+.++..++..+.. .+.||+++
T Consensus       311 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (393)
T PRK09705        311 PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISG--NYLMDWAFHALCVVGLMIITLRFAPARFP  386 (393)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            777666667764 5789999999999999999999999888877544  37777777766666655554 44677643

>TIGR00897 2A0118 polyol permease family

Probab=99.27  E-value=1.3e-10  Score=101.16  Aligned_cols=148  Identities=14%  Similarity=0.093  Sum_probs=110.9

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHH-HHHHHHHHHHHHhhh-----hhhHHHHHHHHHHH
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVL-MGGAAFLAGSALGGA-----AVNVYMLIFGRLLL   94 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~   94 (310)
                      ...+++|.++.+.+.+.+...++..++.++.|+++||+|||+.+. .+.+...++.+....     .++.+...+..++.
T Consensus       247 ~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  326 (402)
T TIGR00897       247 MFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIAL  326 (402)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence            334668999999999999999999999999999999999988764 333333333332221     24566667778888


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcc
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  173 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  173 (310)
                      |++.+...+ ....+.|.. +++|+++.++.+....+|..++|.+++.+.+.   .||+..+++.+++.++..+...|+
T Consensus       327 G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~---~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       327 GIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF---FGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHHHHHHHHHHh
Confidence            887776544 345567765 56899999999999999999999998877654   469999998888877766665554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.26  E-value=4.3e-10  Score=100.24  Aligned_cols=154  Identities=12%  Similarity=0.051  Sum_probs=115.4

Q ss_pred             cccccccccchhHHHHHHH-HHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHh---hhh-hhHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTS-SLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GAA-VNVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r~l~   94 (310)
                      +.+.+++|.++++.++... ...++..++.++.|+++||+|+|+.+.++.++..++.+..   +.. ++.+.+...-++.
T Consensus       247 ~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~  326 (491)
T PRK11010        247 TFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFE  326 (491)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            4556678999999999974 5668999999999999999999988777666555443322   222 3444444455665


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhccc
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP  174 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~  174 (310)
                      .++.|...+....+..+..+++.+++..++.+....+|..+++.+.+.+.+.   .||+..|.+.++++++..+...+++
T Consensus       327 ~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~---~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        327 NLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA---HGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555566788889999999999999999999999988887887777653   4699999888888887776666665


Q ss_pred             CC
Q 021634          175 ET  176 (310)
Q Consensus       175 es  176 (310)
                      ++
T Consensus       404 ~~  405 (491)
T PRK11010        404 QT  405 (491)
T ss_pred             hc
Confidence            43

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.26  E-value=8.8e-11  Score=105.16  Aligned_cols=140  Identities=23%  Similarity=0.097  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhh----HHHHHHHHHHHhhcccccccchhhhhhhcc
Q 021634           38 SSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN----VYMLIFGRLLLGVGVGFANQSVPLYLSEMA  113 (310)
Q Consensus        38 ~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~  113 (310)
                      .+..++..++.++.++++||+|||+.++++..+..++..+.++..+    ...+...-+...++.....+....+.+|.+
T Consensus       342 ~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~  421 (502)
T TIGR00887       342 IIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF  421 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccC
Confidence            3344566678899999999999999998888777776655544321    111111111112222233456677789999


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCC-------CchhHHHHHhhHHHHHHHHHHhhcccCCc
Q 021634          114 PARYRGAINNGFQFSIGIGALAANFINYGTEQIKG-------GWGWRVSLALAAVPASILTLGALFLPETP  177 (310)
Q Consensus       114 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~wr~~~~~~~~~~~~~~~~~~~~~es~  177 (310)
                      |++.|+++.++.+....+|..+++.+.+.+.+..+       +.++...+++.++..++..+..+++||+.
T Consensus       422 p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence            99999999999999999999999988776654321       23455677777777666666666789874

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.25  E-value=7.4e-11  Score=98.66  Aligned_cols=152  Identities=19%  Similarity=0.164  Sum_probs=133.0

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccc
Q 021634           23 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  102 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  102 (310)
                      .+++|++..+...+.....+..++|++++|++.||+|.|+++..++++..+.++...+...-..+.++-.+.|...|+.+
T Consensus       280 ~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q  359 (438)
T COG2270         280 AADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ  359 (438)
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence            45899999999999999999999999999999999999999999999999999988887777777788899999999999


Q ss_pred             cchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCC
Q 021634          103 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPET  176 (310)
Q Consensus       103 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es  176 (310)
                      ....+|.++..|+++-++.+|+++...-.+..++|.+-..+.+..+  +-|.-+....++.++.++..+.+|+.
T Consensus       360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg--~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITG--SSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhc--chhhHHHHHHHHHHhhHhhEEeecCC
Confidence            9999999999999999999999999999999999999887777665  35666666666666666666666654

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.24  E-value=6.3e-11  Score=105.22  Aligned_cols=150  Identities=13%  Similarity=0.052  Sum_probs=104.0

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCch-------hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRK-------PSVLMGGAAFLAGSALGGAAVNVYMLIFGRL   92 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~   92 (310)
                      +.+.+++|++..+.+.+.++..++..++.++.|+++||+|||       ....+..++..++.++....++.+...+.-+
T Consensus       277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~  356 (476)
T PLN00028        277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMI  356 (476)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            344567899999999999999999999999999999999875       2333333333343444455555555555555


Q ss_pred             HHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634           93 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus        93 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      +.+++.+...+....++.+.. +++|+.+.++...+..+|..+++.+-.    ..+..+|+..|++.+++.++..+..++
T Consensus       357 l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~----~~~~~~y~~~f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        357 LFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF----TGSSYSTETGISLMGVMIIACTLPVAF  431 (476)
T ss_pred             HHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH----hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence            566655444555555566654 478999999988877788877776532    222346999999888887777766666


Q ss_pred             cc
Q 021634          173 LP  174 (310)
Q Consensus       173 ~~  174 (310)
                      ++
T Consensus       432 ~~  433 (476)
T PLN00028        432 IH  433 (476)
T ss_pred             ee
Confidence            54

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.24  E-value=1.5e-10  Score=100.74  Aligned_cols=242  Identities=14%  Similarity=0.136  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhc--ccccccchhhhhhhccccc
Q 021634           39 SLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVG--VGFANQSVPLYLSEMAPAR  116 (310)
Q Consensus        39 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~~~~~~~~~~~~~~~~~~~  116 (310)
                      ...+...+.++..|.++||+|||..+....+...+..+...+.. +|.+.    +.++.  .+.......++++|....+
T Consensus        70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~  144 (463)
T KOG2816|consen   70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE  144 (463)
T ss_pred             hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence            34667788999999999999999999999988888877766655 44433    44443  2456677789999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hcccCCchhhHhccCcHHHHHHHHH
Q 021634          117 YRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LFLPETPNSLIQRKSDHQKAKLMLQ  195 (310)
Q Consensus       117 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~~~es~~~~~~~~~~~~~~~~~~~  195 (310)
                      +|....++.......+..++|.++......   .+.-..|.+..+..++..+.. .++||+........       ....
T Consensus       145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~---~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-------~~~~  214 (463)
T KOG2816|consen  145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKF---LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSD-------ATLR  214 (463)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHHHHhhccccccCcccccc-------cccc
Confidence            999999999999999999999998877765   356678888777777766655 45888753221110       0000


Q ss_pred             HhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHHHHH-HHcCCCchhHHH
Q 021634          196 RVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLF-RTIGLGRLKVCQ  274 (310)
Q Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~  274 (310)
                      +..........             .....+...+....+..+.......+..........-..++++ ...++++.+.+.
T Consensus       215 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~  281 (463)
T KOG2816|consen  215 ELTPGSLDSSH-------------VADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSD  281 (463)
T ss_pred             ccCCCcccchh-------------hhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHH
Confidence            00000000000             0011111111111111122122222221111111111223444 356999999999


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          275 LSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       275 ~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      +.+..+....++.++.... +...++.|++...|+
T Consensus       282 ~~~~~~~~~~i~~l~~~~~-l~~~l~~~~~i~lGl  315 (463)
T KOG2816|consen  282 LLSLVSILGIISQLLLLPL-LSSILGEKRLISLGL  315 (463)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHhhhhHhhHHH
Confidence            9999988888988888831 677788888665554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.23  E-value=2e-10  Score=100.87  Aligned_cols=153  Identities=14%  Similarity=0.045  Sum_probs=96.5

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh--h--hhhHHHHHHHHHHHh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG--A--AVNVYMLIFGRLLLG   95 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~~~~~~l~~~r~l~G   95 (310)
                      +.+.+++|.+.++.+...++..++..+++++.|+++||+|||+.+.++..+..+..+...  .  .++....+..-.+.+
T Consensus       268 ~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (432)
T PRK10406        268 KYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCAL  347 (432)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            345567888998999989888888899999999999999999988776654433332111  1  122222222222222


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhHHHHHHHH-HHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhccc
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI-GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP  174 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~  174 (310)
                      .+.+...+....+++|++|++.|+.+.++.+....+ .....|.+...+... +  .|...+++.++..++..+..++++
T Consensus       348 ~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~-g--~~~~~~~~~~~~~~i~~~~~~~l~  424 (432)
T PRK10406        348 LIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSI-G--METAFFWYVTLMAVVAFLVSLMLH  424 (432)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHh-C--CCcHHHHHHHHHHHHHHHHHHHhh
Confidence            333333445667889999999999999997755443 233466665544322 1  255566666666666555555554


Q ss_pred             C
Q 021634          175 E  175 (310)
Q Consensus       175 e  175 (310)
                      +
T Consensus       425 ~  425 (432)
T PRK10406        425 R  425 (432)
T ss_pred             h
Confidence            3

>TIGR00898 2A0119 cation transport protein

Probab=99.22  E-value=1.7e-10  Score=103.52  Aligned_cols=134  Identities=20%  Similarity=0.116  Sum_probs=106.2

Q ss_pred             HHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHhhcccccccchhhhhhhccccc
Q 021634           39 SLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNV--YMLIFGRLLLGVGVGFANQSVPLYLSEMAPAR  116 (310)
Q Consensus        39 ~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  116 (310)
                      +..+...++.++.+++.||+|||+.+.++.++.+++.++..+.++.  +...+.-++.+++.+..++....+..|.+|++
T Consensus       363 ~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  442 (505)
T TIGR00898       363 ISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV  442 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence            3445667788999999999999999999999888888777666543  44445556666767777788889999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCc
Q 021634          117 YRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETP  177 (310)
Q Consensus       117 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~  177 (310)
                      .|+.++++.+....+|.+++|.+.+ +..    .++...+++.++..++..+..+++||+.
T Consensus       443 ~r~~~~g~~~~~~~ig~~i~p~i~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       443 VRNLGVGVCSTMARVGSIISPFLVY-LGE----KWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHhhhHhHHHHHHHHHHHHHhHHHH-HHH----HHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            9999999999999999999999876 332    3466677777777777777777889874

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.21  E-value=2.6e-10  Score=99.99  Aligned_cols=124  Identities=13%  Similarity=0.030  Sum_probs=92.3

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhh--cccc
Q 021634           23 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGV--GVGF  100 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~--~~~~  100 (310)
                      .++.|.++.+.+...+...++..++.++.|+++||+|||+.+..+.++..+..+.....++.....+.-++.|+  +...
T Consensus       258 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (426)
T PRK12307        258 LAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVG  337 (426)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhccc
Confidence            34568889999999999999999999999999999999999988887766665544332221112222223332  2222


Q ss_pred             cccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 021634          101 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI  146 (310)
Q Consensus       101 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (310)
                      ..+..+.++.|.+|++.|++++++......+|..++|.+.+.+.+.
T Consensus       338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~  383 (426)
T PRK12307        338 VGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT  383 (426)
T ss_pred             HhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence            3345667789999999999999999999999999999998877654

>PRK10504 putative transporter; Provisional

Probab=99.20  E-value=2.3e-10  Score=101.68  Aligned_cols=123  Identities=12%  Similarity=-0.010  Sum_probs=101.2

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHhhccc
Q 021634           23 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA---VNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~   99 (310)
                      +..+|.++.+.++......++..++.++.++++||+|||+++..+..+..++..+..+.   .+.+.+.+.-++.|++.+
T Consensus       289 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  368 (471)
T PRK10504        289 QIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNS  368 (471)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHH
Confidence            34578899999999988888888999999999999999999998888777776655443   333444455677888888


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  145 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (310)
                      ...+....++.+..|+++|+.+.++.+....+|..+++.+++.+..
T Consensus       369 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        369 TRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999999999999999888888776543

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.20  E-value=1.5e-10  Score=99.13  Aligned_cols=121  Identities=13%  Similarity=0.042  Sum_probs=108.8

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHHhhccccccc
Q 021634           25 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN-VYMLIFGRLLLGVGVGFANQ  103 (310)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~~~~~  103 (310)
                      .++.++.+.+.+.+...++..++.++.+++.||+|||+.+..+..+..++.....+.++ .+.+.+..++.|++.+...+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  320 (365)
T TIGR00900       241 YLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINV  320 (365)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999999999999999999999999999999999888877777777777764 78888889999999998889


Q ss_pred             chhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 021634          104 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  145 (310)
Q Consensus       104 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (310)
                      ....++.|..|+++|++..++.+....+|..+++.+++.+.+
T Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       321 PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999876654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.20  E-value=3.8e-10  Score=99.73  Aligned_cols=150  Identities=13%  Similarity=0.050  Sum_probs=99.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh--CchhHH-HHHHHHHHHHHHHhhh--hhhHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF--GRKPSV-LMGGAAFLAGSALGGA--AVNVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~-~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~   94 (310)
                      .+++++.|.+..+.++....+.++..++.++.|+++||+  |||+.. .....+..++.+....  ..+.+...++.++.
T Consensus       278 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  357 (452)
T PRK11273        278 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVI  357 (452)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence            445666888999999999999999999999999999999  555432 2222333333322222  23444444445555


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHH-HHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGAL-AANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      |.+..........+..|.+|++.||+++++.+....+|.. .+|.+.+.+.+.   .||+..|++.++.+++..+....
T Consensus       358 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~---~g~~~~f~~~~~~~~~~~~~~~~  433 (452)
T PRK11273        358 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIV  433 (452)
T ss_pred             HHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHH---hcchHHHHHHHHHHHHHHHHHHH
Confidence            5543222223345677999999999999999887777754 468877766643   46999998877776666555443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.19  E-value=6.9e-10  Score=88.49  Aligned_cols=154  Identities=18%  Similarity=0.179  Sum_probs=114.5

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHH
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-------VNVYMLIFGR   91 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r   91 (310)
                      .|++++.+|+|.+|...+.+.-.+|..+ .++.|.+.|++|++.++.+|.+...+|..+...+       .++|.+.+..
T Consensus        25 S~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~  103 (250)
T PF06813_consen   25 SPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFL  103 (250)
T ss_pred             hHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHH
Confidence            3778899999999999999999999987 4899999999999999999999999998776543       3567777777


Q ss_pred             HHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh
Q 021634           92 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  171 (310)
Q Consensus        92 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  171 (310)
                      ++.|.+.+...+.......+.|| ++||++.++.....++++.+-..+...+...   ..-+..+.....+.++.++..+
T Consensus       104 ~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~---~~~~fll~la~~~~~v~l~~~~  179 (250)
T PF06813_consen  104 FLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD---DPSSFLLFLAVLPAVVCLVAMF  179 (250)
T ss_pred             HHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHhh
Confidence            77777766666666666667887 5799999999999999887766664433322   2233444444444445555555


Q ss_pred             cccCCc
Q 021634          172 FLPETP  177 (310)
Q Consensus       172 ~~~es~  177 (310)
                      ++++.|
T Consensus       180 ~vr~~~  185 (250)
T PF06813_consen  180 FVRPVP  185 (250)
T ss_pred             heeccC
Confidence            554443

>PRK15075 citrate-proton symporter; Provisional

Probab=99.18  E-value=6.1e-10  Score=97.94  Aligned_cols=129  Identities=16%  Similarity=0.043  Sum_probs=91.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHH-h---hhhhhHHHHHHHHHHHh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSAL-G---GAAVNVYMLIFGRLLLG   95 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~r~l~G   95 (310)
                      .++++.+|++..+.++......++..++.++.|+++||+|||+.+..+.++..+.... .   ...+++.......++.|
T Consensus       263 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (434)
T PRK15075        263 TFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLS  342 (434)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            3345567899999999998999999999999999999999999887765544332211 1   11233434444455566


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhHHH-HHHHHHHHHHHHHHhhhcccCC
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQ-FSIGIGALAANFINYGTEQIKG  148 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~  148 (310)
                      ++.+...+....++.|.+|++.|+...++.. .+..++..++|.+.+.+.+..+
T Consensus       343 ~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        343 FLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            6666666666788999999999999999854 4444556677888776665443

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.18  E-value=1.9e-09  Score=93.71  Aligned_cols=154  Identities=17%  Similarity=0.191  Sum_probs=112.7

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh----hhH--HH---HHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA----VNV--YM---LIFG   90 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~~~--~~---l~~~   90 (310)
                      ..+-++-|++..+..+.+....+...+..+++..+.||+|||+.++.+..+..+..++....    ...  |.   .+++
T Consensus       294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~  373 (485)
T KOG0569|consen  294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAA  373 (485)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            44666778999999999999999999999999999999999999999999988888766543    111  11   2233


Q ss_pred             HHHHhhcccc-cccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHH
Q 021634           91 RLLLGVGVGF-ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG  169 (310)
Q Consensus        91 r~l~G~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~  169 (310)
                      .++..++.+. .-|+.+-+.+|.+|++.|+.++++......++..+....-..+.+..+   = +.|+...+++++..+.
T Consensus       374 ~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---~-~~filF~i~~~~~~i~  449 (485)
T KOG0569|consen  374 IFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---P-YVFILFVIPLAIFLIY  449 (485)
T ss_pred             HHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-hhhHHHHHHHHHHHHH
Confidence            4444433333 356777889999999999999999888888887766665444444332   2 5666666666666555


Q ss_pred             h-hcccCCc
Q 021634          170 A-LFLPETP  177 (310)
Q Consensus       170 ~-~~~~es~  177 (310)
                      . ..+||+.
T Consensus       450 ~~~~lPETk  458 (485)
T KOG0569|consen  450 LYRYLPETK  458 (485)
T ss_pred             HHHhCcccC
Confidence            4 4599984

>TIGR00895 2A0115 benzoate transport

Probab=99.18  E-value=1.9e-10  Score=99.66  Aligned_cols=124  Identities=12%  Similarity=0.068  Sum_probs=101.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.++++.++.+.+...+...++..++.++.|+++||+|||+.+....+.......+.....+.+...+..++.|++.+
T Consensus       274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  353 (398)
T TIGR00895       274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVN  353 (398)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            35567788999999999999999999999999999999999955444444333333333335666777788899999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGT  143 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  143 (310)
                      ...+....++.|.+|+++|+++.++......+|..++|.+.+.+
T Consensus       354 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       354 GGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            88999999999999999999999999999999999999987643

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.17  E-value=4.9e-10  Score=99.65  Aligned_cols=145  Identities=15%  Similarity=0.152  Sum_probs=126.8

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccc
Q 021634           23 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  102 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  102 (310)
                      .+++|.++...|++.+.+.+|..+|+++.+++.+|+++++.+..+.++.+++.+..+++++.+...+.-++.|++.....
T Consensus       246 ~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~  325 (524)
T PF05977_consen  246 RDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIALFLAGAAWIIAN  325 (524)
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             cchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh
Q 021634          103 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus       103 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                      +...+.+.+..|++.|||.++++++....+..+|..+.+.+.+.   .|-+..+.+.++..++..++.
T Consensus       326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~---~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH---FGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999999999999888888888888877754   357777777666555444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.17  E-value=2.1e-09  Score=94.62  Aligned_cols=117  Identities=22%  Similarity=0.243  Sum_probs=97.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhcccccccchhh
Q 021634           29 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-VNVYMLIFGRLLLGVGVGFANQSVPL  107 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~  107 (310)
                      ++.+.+++.++..++..++.+++++++||+|+|+++..+..+..++.+...+. ++.+.+.+..++.|++.+...+...+
T Consensus       255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  334 (437)
T TIGR00792       255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWA  334 (437)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677788888899999999999999999999999999988888877766554 45666777788889998888888889


Q ss_pred             hhhhccc-------ccchhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 021634          108 YLSEMAP-------ARYRGAINNGFQFSIGIGALAANFINYGTEQ  145 (310)
Q Consensus       108 ~~~~~~~-------~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (310)
                      +++|..|       ++.+|...++.+....+|..+++.+.+.+.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       335 LVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             HHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888865       4557899999999999999999888776654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.15  E-value=1.4e-09  Score=94.05  Aligned_cols=139  Identities=12%  Similarity=0.045  Sum_probs=114.1

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQ  103 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~  103 (310)
                      +|.|.++.+.+.+.+...++..+..++.|++.||+|+|+.+..+.....++.+..+.+++.+.+++..++.|++.+...+
T Consensus       233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~  312 (382)
T PRK11128        233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHL  312 (382)
T ss_pred             HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999899999999999999999999999999998888888888889999999999999999888888


Q ss_pred             chhhhhhhcccccchhhhhhHHH-HHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHH
Q 021634          104 SVPLYLSEMAPARYRGAINNGFQ-FSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT  167 (310)
Q Consensus       104 ~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~  167 (310)
                      ....++.+. +++++++..+.+. ....+|..+++.+++.+.+..   ++ ..++..+++.++..
T Consensus       313 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~---g~-~~~~~~~~~~~~~~  372 (382)
T PRK11128        313 AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL---GA-GVFWVMALVALPAL  372 (382)
T ss_pred             HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cH-HHHHHHHHHHHHHH
Confidence            888888886 5666788888876 556778888999988887643   45 35555555554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.14  E-value=6.4e-10  Score=97.76  Aligned_cols=148  Identities=18%  Similarity=0.127  Sum_probs=101.4

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh--Cc-hhHHHH---HHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF--GR-KPSVLM---GGAAFLAGSALGGAAVNVYMLIFGRLLL   94 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Gr-r~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~r~l~   94 (310)
                      .+.+++|++..+.+...+.+.++..++.++.|+++||+  ++ |+....   +.....++..... ..+.....+..+..
T Consensus       269 ~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  347 (434)
T PRK11663        269 YMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP-FASYVMQAACFFTI  347 (434)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHH
Confidence            45577899999999999999999999999999999999  33 332222   2121221212222 22333333344445


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      |++...........+.|.+|+++|++++++.+....+|..++|.+.+.+.+.   .||+..|++.+++.++..+..+.
T Consensus       348 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~---~g~~~~f~~~~~~~~~~~~~~~~  422 (434)
T PRK11663        348 GFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI---WHWTGFFVVISIAAGISALLLLP  422 (434)
T ss_pred             HHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh---cccHHHHHHHHHHHHHHHHHHHH
Confidence            5433222223345678999999999999999999999999999997777653   56999998888887776655543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.11  E-value=1.5e-09  Score=94.34  Aligned_cols=141  Identities=14%  Similarity=0.146  Sum_probs=115.8

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchh
Q 021634           27 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVP  106 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  106 (310)
                      +.+..+.+.+.++..+...++.+..|++.||+|||+.+.++..+.++...+...+++.+.+++.+++.|++.........
T Consensus       250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778888888899999999999999999999999999988888877777788888888899999998766666666


Q ss_pred             hhhhhcccccchhhhhhH-HHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh
Q 021634          107 LYLSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus       107 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                      .+..+..+++.++...+. .+....+|..+++.+++.+.+.   .||+..|.+.+++.++..+..
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~---~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS---IGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh---cccHHHHHHHHHHHHHHHHHH
Confidence            777787888878776665 6778899999999998887754   369999998888777665544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.10  E-value=7.1e-10  Score=109.09  Aligned_cols=143  Identities=13%  Similarity=0.071  Sum_probs=119.0

Q ss_pred             cccccccccchh-HHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           20 TKISNYCKFDSQ-LLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        20 ~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      ..+.+++|.+.. +.+++.+...++.++++++.|+++||+++|+.+.++.++.+++.++..+..+.+.++++.++.|++.
T Consensus       257 ~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  336 (1146)
T PRK08633        257 AYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSA  336 (1146)
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            345667888988 9999999999999999999999999999999998888888888888888888888888899999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHH
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPAS  164 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~  164 (310)
                      +...+...+++.+..|++.||+++++.+....+|.++++.++..+...  ..++...+++.+.+.+
T Consensus       337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~  400 (1146)
T PRK08633        337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGL--GLSPAGLFYLIALVTL  400 (1146)
T ss_pred             HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHH
Confidence            988888899999999999999999999999999988877777655431  1345556655554443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=99.10  E-value=4.2e-08  Score=89.40  Aligned_cols=150  Identities=15%  Similarity=0.201  Sum_probs=118.4

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh-CchhHHHHHHHHHHHHHHHhhhhhh--------HHHHHHHHH
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAVN--------VYMLIFGRL   92 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~r~   92 (310)
                      +.+.+|.+.+....+...+....-+.++++|.++|++ ||++.+.++.++..++..+.+++..        ....+++-.
T Consensus        14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa   93 (654)
T TIGR00926        14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA   93 (654)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH
Confidence            4456788999998898988888899999999999975 9999999999999999887766421        223556677


Q ss_pred             HHhhcccccccchhhhhhhcccccc---hhhhhhHHHHHHHHHHHHHHHHHhhhcccC----CCchhHHHHHhhHHHHHH
Q 021634           93 LLGVGVGFANQSVPLYLSEMAPARY---RGAINNGFQFSIGIGALAANFINYGTEQIK----GGWGWRVSLALAAVPASI  165 (310)
Q Consensus        93 l~G~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~----~~~~wr~~~~~~~~~~~~  165 (310)
                      +.++|.|+.-+...+...|.+++++   |-+...++..+.++|.++++.+...+....    ...+|...|.+.++..++
T Consensus        94 Lia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~i  173 (654)
T TIGR00926        94 LIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMIL  173 (654)
T ss_pred             HHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHH
Confidence            7888889999999999999997643   566788888899999999888877665332    234699999988888777


Q ss_pred             HHHHhh
Q 021634          166 LTLGAL  171 (310)
Q Consensus       166 ~~~~~~  171 (310)
                      .++...
T Consensus       174 a~lvf~  179 (654)
T TIGR00926       174 ALIVFM  179 (654)
T ss_pred             HHHHHH
Confidence            665543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.09  E-value=4e-09  Score=91.95  Aligned_cols=139  Identities=13%  Similarity=0.044  Sum_probs=105.1

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHhh
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLLLGV   96 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~   96 (310)
                      +.+++|.++.+.++......++..++.++.|+++||+|+|+.+.++.++..++..+....     .+.+.+.+.-++.|+
T Consensus       242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~  321 (406)
T PRK15402        242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAF  321 (406)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence            456688999999988888888899999999999999999999988888777776665543     345666777888999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHH
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPAS  164 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~  164 (310)
                      +.+...+........ .++++||+..+.++....+|..+++.+++.+.+..   ++....+..++..+
T Consensus       322 g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~---~~~~~~~~~~~~~~  385 (406)
T PRK15402        322 GIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG---GNGLFNLFNLANGL  385 (406)
T ss_pred             HHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC---chHHHHHHHHHHHH
Confidence            888776666554443 34589999999999999999999999977765443   34443333333333

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.08  E-value=1.4e-09  Score=94.58  Aligned_cols=147  Identities=12%  Similarity=0.024  Sum_probs=110.0

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhHHHHh-hhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccc
Q 021634           23 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR-AFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  101 (310)
                      .+|.+.++.+.+++.+...++...+..+.+++.| |++.++.+..+..+..++..+.+++++++.+.+..++.|++.+..
T Consensus       235 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~  314 (400)
T PRK11646        235 VNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIA  314 (400)
T ss_pred             HHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            3444447778888888877777666666666665 466677777788888888777778888887777788888888888


Q ss_pred             ccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchh-HHHHHhhHHHHHHHHHH
Q 021634          102 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGW-RVSLALAAVPASILTLG  169 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w-r~~~~~~~~~~~~~~~~  169 (310)
                      .+....++.|..|+++||+.+++.+....+|..++|.+++.+.+..+.+++ ...++..++.+++..+.
T Consensus       315 ~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        315 EPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             HccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            888889999999999999999999999999999999999988765432232 34444445444444433

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.06  E-value=4.5e-09  Score=91.11  Aligned_cols=143  Identities=13%  Similarity=0.009  Sum_probs=105.5

Q ss_pred             ccccccchhHHHHHHHHHHH-HHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh------hhhHHHHHHHHHHHh
Q 021634           23 SNYCKFDSQLLTSFTSSLYV-AGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA------AVNVYMLIFGRLLLG   95 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~r~l~G   95 (310)
                      .+|.|.++++.+++.....+ ...++.++.|++.||+|+|+.+..+..+..+..+....      .++...+.....+.+
T Consensus       235 l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (390)
T TIGR02718       235 LVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGS  314 (390)
T ss_pred             HHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHH
Confidence            34679999999999888764 66778899999999999999988877665333322211      123333444455566


Q ss_pred             hcccccccchhhhhhhcccc-cchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHH
Q 021634           96 VGVGFANQSVPLYLSEMAPA-RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL  168 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~  168 (310)
                      ++.+...+.....+.+..++ +++++.+++.+....+|..++|.+++.+.+.   .||+..|++.+++.++..+
T Consensus       315 ~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~---~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       315 LITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR---FGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccHHHHHHHHHHHHHHHH
Confidence            66676667777777777766 7899999999999999999999999887754   3688888887766665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.06  E-value=4.1e-10  Score=99.68  Aligned_cols=153  Identities=16%  Similarity=0.083  Sum_probs=136.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhC--chhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG--RKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~   97 (310)
                      +...++.+.++++.+.+.++..+...++.++.|+++|+..  ++.+..++++..+++.+.++++++++.++..-.+.|++
T Consensus       322 ~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~  401 (509)
T KOG2504|consen  322 PSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFC  401 (509)
T ss_pred             HHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4455588999999999999999999999999999999998  55666778888888888999999999999999999999


Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhccc
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLP  174 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~  174 (310)
                      .|.........+.|..+.++-+.+.|+...+.+++.+++|++++.+.+..+  +|...|+..++..++..+.+++.|
T Consensus       402 ~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg--~Y~~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  402 VGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITG--NYDHAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             HHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccC--CeeeehhhcChHHHHHHHHHHHhH
Confidence            999888888899999999999999999999999999999999987776655  488899999988888887777766

>PRK09848 glucuronide transporter; Provisional

Probab=99.05  E-value=9.1e-09  Score=90.92  Aligned_cols=124  Identities=11%  Similarity=0.040  Sum_probs=97.5

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHhhcc
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA--VNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~   98 (310)
                      .+++.+|.++...++......++..++.+++++++||+|+|+.+.++.++..++.+...+.  .+.+.+.+..++.|+|.
T Consensus       254 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~  333 (448)
T PRK09848        254 YVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQ  333 (448)
T ss_pred             eEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH
Confidence            3455567666555555555567788899999999999999999999998888887766654  35666777788899999


Q ss_pred             cccccchhhhhhhccccc-------chhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021634           99 GFANQSVPLYLSEMAPAR-------YRGAINNGFQFSIGIGALAANFINYGTE  144 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~  144 (310)
                      +...+...++.+|..|.+       ++|...++.+....+|..+++.+.+.+.
T Consensus       334 ~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        334 GVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             HHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888889998888754       3488889999999999988888876554

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.03  E-value=6.8e-09  Score=87.63  Aligned_cols=149  Identities=10%  Similarity=0.052  Sum_probs=122.3

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHhhc
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-AVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~   97 (310)
                      .|.+++..|.|.+..+++.-.+.++..+|..+.|+++|| +.|+.+.....+..+..+...+ .++.+...+.-++.|+.
T Consensus       235 ~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a  313 (394)
T COG2814         235 RPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFA  313 (394)
T ss_pred             HHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            477888999999999999999999999999999999999 9999888887777777665554 45555666667777777


Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      .+........-+++ ..|+.+..+.++.....++|..+|..+++.+.+.   +|+....++.++..++..+..+.
T Consensus       314 ~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~---~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         314 FSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA---LGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             hhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666 4468899999999999999999999999987764   67999999999888887766654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.02  E-value=2.2e-09  Score=94.49  Aligned_cols=154  Identities=13%  Similarity=0.034  Sum_probs=98.0

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHH---HHHHHhhh--hhhHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFL---AGSALGGA--AVNVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---~~~~~~~~--~~~~~~l~~~r~l~   94 (310)
                      .++++..|.++.+.++..+...++..++.++.|+++||+|+++....+.....   ++......  ..+.+.....-++.
T Consensus       276 ~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (438)
T TIGR00712       276 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVI  355 (438)
T ss_pred             HHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            44555678899999999999999999999999999999975432222322211   11111111  12333333344455


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHH-HHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh-hc
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIG-ALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA-LF  172 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~-~~  172 (310)
                      |.+.............|.+|+++|+++.++.+....+| ..++|.+.+.+.+.   .||...+++.....++..+.. .+
T Consensus       356 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~  432 (438)
T TIGR00712       356 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIVV  432 (438)
T ss_pred             HHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHH
Confidence            54322222222345779999999999999998777666 46788887766653   358888887666665555444 44


Q ss_pred             ccCC
Q 021634          173 LPET  176 (310)
Q Consensus       173 ~~es  176 (310)
                      +||.
T Consensus       433 ~~~~  436 (438)
T TIGR00712       433 MIGE  436 (438)
T ss_pred             Hhhc
Confidence            6654

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.01  E-value=5e-09  Score=90.61  Aligned_cols=147  Identities=7%  Similarity=-0.004  Sum_probs=104.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHhhcc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG-AAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~   98 (310)
                      +.+.+.+|.++++.+++.+...++..++.++.|++.||+|+|+.+..+..+..++.++.. ..++.+...+..++.+.+.
T Consensus       224 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~  303 (382)
T PRK10091        224 PYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGL  303 (382)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            455566899999999999999999999999999999999999999988888777765544 3455555556666666654


Q ss_pred             cccccchh-hhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh
Q 021634           99 GFANQSVP-LYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus        99 ~~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                      ....+... ....+..+++.++...  .+....+|..++|.+++.+.+..  .+|++.+.+.++..++.....
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~--~~~~~~~~~~~~~~~~~~~~~  372 (382)
T PRK10091        304 FALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLG--LAYNYVALPAALLSFAAMSSL  372 (382)
T ss_pred             HhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcc--cCcchHHHHHHHHHHHHHHHH
Confidence            44333333 3344444555555443  35677889999999988776532  368888888766665554433

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.01  E-value=2.5e-09  Score=84.87  Aligned_cols=144  Identities=13%  Similarity=0.028  Sum_probs=110.6

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHH-HHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAA-FLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      -.++.||+|+...+.+.+......++.+++.|.++||+|++...+.+..+ ..++-....+  +.+.=..+..+.|+..+
T Consensus       290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsys  367 (459)
T KOG4686|consen  290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYS  367 (459)
T ss_pred             HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHH
Confidence            36788999999999999999999999999999999999999877665444 3333333333  33334556677888766


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHh-hHHHHHHH
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLAL-AAVPASIL  166 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~-~~~~~~~~  166 (310)
                      ..-...+..++...|+++.|++.+..++..++|-.+.+++++++.+..+.+.|--+|.+ .+..++..
T Consensus       368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~s  435 (459)
T KOG4686|consen  368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTS  435 (459)
T ss_pred             HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHH
Confidence            65555677788889999999999999999999999999999999887766667666655 33333333

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.00  E-value=3.4e-09  Score=94.55  Aligned_cols=124  Identities=10%  Similarity=0.061  Sum_probs=105.5

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHhh
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA----AVNVYMLIFGRLLLGV   96 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~   96 (310)
                      .+++.+|.++.+.++......++..++.++.|++.||+|||+.+..+..+..++..+..+    ..+++.+....++.|+
T Consensus       281 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  360 (485)
T TIGR00711       281 YLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGF  360 (485)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHH
Confidence            455668999999999999999999999999999999999999999998888888776652    2345666777889999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  144 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  144 (310)
                      +.+...+.......+..|+++|+.+.++.+....+|..+++.+.+.+.
T Consensus       361 g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~  408 (485)
T TIGR00711       361 GMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL  408 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988887777777788899999999999999999999999988866554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.00  E-value=1.5e-08  Score=88.00  Aligned_cols=143  Identities=10%  Similarity=-0.022  Sum_probs=107.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.+++|.++++.+.......++..++.++.+++.||.+++..+....+......++....++.+.+.+..++.|++.+
T Consensus       241 p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~  320 (394)
T PRK10213        241 PVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFA  320 (394)
T ss_pred             HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            44556789999999999999999999999999999999654443333333333334444456677777888899999988


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHH
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL  166 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~  166 (310)
                      ...+....++.+..| +++++..+.......+|..+++.+++.+.+.   .|++..+...++..++.
T Consensus       321 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~---~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        321 LVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN---IGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             hhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhhHHHHHHHHHHHH
Confidence            888888888888886 5567777777888889999999998888754   45777777766554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.00  E-value=9e-09  Score=89.63  Aligned_cols=147  Identities=12%  Similarity=0.047  Sum_probs=101.1

Q ss_pred             cccccccccchhHHHHHHHHHH-HHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHh---hhh-hhHHHHHHHH---
Q 021634           20 TKISNYCKFDSQLLTSFTSSLY-VAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GAA-VNVYMLIFGR---   91 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~-~~~~~l~~~r---   91 (310)
                      +.+.+++|+++++.+++.+... ++..++.++.|++.||+|||+.+..+..+..+..+..   ++. ++.+.+++.-   
T Consensus       234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  313 (402)
T PRK11902        234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIE  313 (402)
T ss_pred             HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            4466778999999999987654 5688999999999999999998877777666554332   333 3555555444   


Q ss_pred             -HHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh
Q 021634           92 -LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus        92 -~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                       +..|++.+...+....++.+.+|.+++    +..+...++|...++.+++.+.+.   .||+..|.+.++++++..+..
T Consensus       314 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~---~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        314 NLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEA---YGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHH
Confidence             345555666667777777777776655    444444556666555666666543   579999999888887766555


Q ss_pred             hcc
Q 021634          171 LFL  173 (310)
Q Consensus       171 ~~~  173 (310)
                      +..
T Consensus       387 ~~~  389 (402)
T PRK11902        387 WLM  389 (402)
T ss_pred             HHH
Confidence            443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.99  E-value=4.5e-09  Score=93.97  Aligned_cols=125  Identities=14%  Similarity=-0.055  Sum_probs=106.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHhh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA---AVNVYMLIFGRLLLGV   96 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~r~l~G~   96 (310)
                      .++++.+|.|+.+.+.......++..++.++.|++.||+|+|+.+..+.++..++.++...   .++.+......++.|+
T Consensus       284 ~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~  363 (495)
T PRK14995        284 QELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGF  363 (495)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence            4566778999999999999999999999999999999999999998888888777665443   2455566677899999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  144 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  144 (310)
                      +.|...+.....+.+..|+++++.+.++.+....+|..+|+.+.+.+.
T Consensus       364 g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~  411 (495)
T PRK14995        364 SAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL  411 (495)
T ss_pred             hHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888888888899999999999999999999999999988866553

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.99  E-value=2.8e-09  Score=89.31  Aligned_cols=148  Identities=18%  Similarity=0.135  Sum_probs=110.7

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh--CchhHHHH-HHHHHHHHHHHhhhhh--hHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF--GRKPSVLM-GGAAFLAGSALGGAAV--NVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~-~~~~~~~~~~~~~~~~--~~~~l~~~r~l~   94 (310)
                      .++.|..|.|..+.++..+.+-++...|++++|+++||.  |||.+..+ .+++..++.+..-.++  |++...++-++.
T Consensus       277 ~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~i  356 (448)
T COG2271         277 LYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFII  356 (448)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence            456778899999999999999999999999999999996  77766544 4444444444444444  457778888999


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHH-HHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI-GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                      |+..-+..-.......|..|++--|.+.|+...+..+ |...+...-+.+.   +.+||...|++..+.+++..+..
T Consensus       357 Gf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~---d~~gW~g~Fi~~~~~a~l~~lll  430 (448)
T COG2271         357 GFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIA---DTWGWDGGFIVLSIAALLAILLL  430 (448)
T ss_pred             HHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeE---ecCCCcchHHHHHHHHHHHHHHH
Confidence            9876555566666789999999999999999988877 7766666644443   34789988887666666555444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.99  E-value=2.9e-09  Score=92.92  Aligned_cols=135  Identities=11%  Similarity=0.018  Sum_probs=89.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhH-HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccc
Q 021634           26 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPS-VLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  104 (310)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~  104 (310)
                      .+.+..+.+...+...++..++.++.|+++||++||+. .....++..++..+.....+......+-.+.+++.....+.
T Consensus       274 ~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  353 (412)
T TIGR02332       274 QGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAI  353 (412)
T ss_pred             CCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhH
Confidence            46677888999999999999999999999999997764 33333333333322222222222222222223333223333


Q ss_pred             hhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHH
Q 021634          105 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVP  162 (310)
Q Consensus       105 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~  162 (310)
                      ......|.+|+++|+.+.++.+....+|..++|.+.+.+.+..+  +|++.+++.++.
T Consensus       354 ~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g--~~~~~~~~~~~~  409 (412)
T TIGR02332       354 FWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG--SFNSGLWFVAAL  409 (412)
T ss_pred             HHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC--CCchhHHHHHHH
Confidence            44555788999999999999999999999999998666554332  488887766554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.98  E-value=1.3e-08  Score=88.34  Aligned_cols=123  Identities=10%  Similarity=-0.117  Sum_probs=100.4

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccc
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF  100 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  100 (310)
                      .+++.+|.++.+.+++.+...++..+++++.+++.||+++|+.+..+.. ..+.....++.++++...+..++.|++.+.
T Consensus       231 ~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~  309 (393)
T PRK11195        231 WAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQHSLLPAYPLLILIGALGGF  309 (393)
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHhhhh
Confidence            4566789999999999999999999999999999999999988877753 344444455667777777778889998888


Q ss_pred             cccchhhhhhhcccccc-hhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021634          101 ANQSVPLYLSEMAPARY-RGAINNGFQFSIGIGALAANFINYGTE  144 (310)
Q Consensus       101 ~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~  144 (310)
                      ..+...+.+.|..|++. +|++.++.+....+|..++..+...+.
T Consensus       310 ~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        310 FVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             hhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            78778888888766554 799999999999999888888877554

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.97  E-value=8.3e-09  Score=85.82  Aligned_cols=134  Identities=25%  Similarity=0.349  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHhhcccccccchhhh
Q 021634           31 QLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN--VYMLIFGRLLLGVGVGFANQSVPLY  108 (310)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~~~~~~~~~~  108 (310)
                      ...++..+.+.++..+++++.|.++||+|||+.+..+.....++.+...+..+  .+.+++.|+..|++.+...+....+
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  118 (338)
T COG0477          39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL  118 (338)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            57899999999999999999999999999998888888765666666666665  8889999999999999899999999


Q ss_pred             hhhcccc-cchhhhhhHHHH-HHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHH
Q 021634          109 LSEMAPA-RYRGAINNGFQF-SIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASI  165 (310)
Q Consensus       109 ~~~~~~~-~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~  165 (310)
                      +.|+.|+ ++|+...+.... ...+|..+++.++..+... ...+||..+.........
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-LLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence            9999987 678888888887 5778888888777666554 445799977666555543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.97  E-value=2.1e-08  Score=86.69  Aligned_cols=118  Identities=16%  Similarity=0.203  Sum_probs=92.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHhh
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLLLGV   96 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~   96 (310)
                      +.+++|.++.+.+++.+...++..++.++.|++.||+|||+.+..+..+..++.++....     ++...+....++.|+
T Consensus       233 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  312 (385)
T TIGR00710       233 YIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGI  312 (385)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence            455788999999999999999999999999999999999999988877777776655443     233445556778888


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHH-HHHHHHHHHH
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIG-IGALAANFIN  140 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~g~~~~~~~~  140 (310)
                      +.+...+....+..|..| ++|+++.++.+.... .|.+.++.++
T Consensus       313 ~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       313 GNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             HHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888876 679999998876654 4555555554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10054 putative transporter; Provisional

Probab=98.97  E-value=7.4e-09  Score=89.91  Aligned_cols=150  Identities=11%  Similarity=0.030  Sum_probs=113.3

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhcccccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-VNVYMLIFGRLLLGVGVGFAN  102 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~  102 (310)
                      ++.+.+....+...+...+.....+++.|.+.||+++|+.+..+..+..++.....++ ++.+.+.+..++.|++.+...
T Consensus       237 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  316 (395)
T PRK10054        237 ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYA  316 (395)
T ss_pred             cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777888888777777888899999999999999999988888877766654 567777778899999988778


Q ss_pred             cchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCCc
Q 021634          103 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPETP  177 (310)
Q Consensus       103 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es~  177 (310)
                      +....++.+..|++.|++..+..+ ...+|..++|.+++.+.+..   +....|++.+....+.++..+. ..|.|
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL---PPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            888889999999999999888655 45578999999988877643   4666666655555544444433 44443

>TIGR00896 CynX cyanate transporter

Probab=98.96  E-value=6.5e-09  Score=88.95  Aligned_cols=126  Identities=16%  Similarity=-0.004  Sum_probs=97.2

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh-CchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF  100 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  100 (310)
                      ..++.|.+..+.+.+.+...++..+++++.|+++||+ +||+.+..+..+..++.+...+.++..... .-++.|++.+.
T Consensus       223 ~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~  301 (355)
T TIGR00896       223 ILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGG  301 (355)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhh
Confidence            3345788999999999999999999999999999999 567777777777777776666654433222 34678898888


Q ss_pred             cccchhhhhhhccc-ccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCC
Q 021634          101 ANQSVPLYLSEMAP-ARYRGAINNGFQFSIGIGALAANFINYGTEQIKG  148 (310)
Q Consensus       101 ~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  148 (310)
                      ..+.....+.+..+ +++++...++.+....+|..++|.+.+.+.+..+
T Consensus       302 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       302 AFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88877776665554 5667888898888888888899988887776544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.96  E-value=3.4e-09  Score=90.68  Aligned_cols=107  Identities=10%  Similarity=0.062  Sum_probs=89.6

Q ss_pred             cccccchhHHHHHHHHHH-HHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHH
Q 021634           24 NYCKFDSQLLTSFTSSLY-VAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----------VNVYMLIFGR   91 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~r   91 (310)
                      +++|.++++.+.+.++.. ++..++.+++|++.||+|||+.+..+.++..++.....+.           ++.+.+..+.
T Consensus       237 ~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (356)
T TIGR00901       237 LDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTI  316 (356)
T ss_pred             HHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHH
Confidence            348899999998888766 5778999999999999999999888888877766644432           3456777788


Q ss_pred             HHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHH
Q 021634           92 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIG  130 (310)
Q Consensus        92 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  130 (310)
                      ++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus       317 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       317 TLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            999999999999999999999999999999999877654

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.95  E-value=3.5e-09  Score=87.06  Aligned_cols=131  Identities=14%  Similarity=0.079  Sum_probs=99.9

Q ss_pred             HHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhhcccccchhhh
Q 021634           42 VAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAI  121 (310)
Q Consensus        42 ~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~  121 (310)
                      +.-..|.++.+++.||+|||+++..+.++++++.++...+.+-....+.-+..-++.++.+.+.+.|..|.+|.+.|+..
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg  471 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG  471 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence            45678889999999999999999999999999999887776544444444444455566677889999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCc
Q 021634          122 NNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETP  177 (310)
Q Consensus       122 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~  177 (310)
                      .|..+...-+|+++.|.++.....     +-..+..+.+...++..++..++|=.+
T Consensus       472 vGtcSsmaRIggI~~p~iA~~~e~-----s~sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  472 VGTCSSMARIGGIFSPVIAMRAEL-----STSLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhhhHHhhhhhhhhHHHHHhcc-----ceeehHHHHHHHHHHHHHHheeeeecc
Confidence            999999999999999999832221     122344555666666667777776433

>TIGR00788 fbt folate/biopterin transporter

Probab=98.93  E-value=7.9e-09  Score=91.52  Aligned_cols=152  Identities=8%  Similarity=-0.020  Sum_probs=119.3

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh----------hhhHHHHHHHHHH
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA----------AVNVYMLIFGRLL   93 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l   93 (310)
                      +++|.++.+.|.+.....++.+++....+++.+|++.|+++.++.++.+++......          .++.+.+....++
T Consensus       281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l  360 (468)
T TIGR00788       281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII  360 (468)
T ss_pred             ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence            578999999999999999999999999999999999999999999998888755321          1333445556788


Q ss_pred             HhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCC----CchhHHHH-HhhHHHHHHHHH
Q 021634           94 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG----GWGWRVSL-ALAAVPASILTL  168 (310)
Q Consensus        94 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~wr~~~-~~~~~~~~~~~~  168 (310)
                      .+++.+........++.+..|++.+|...++.+...++|..+++.+++.+.+..+    +++.++.. .+..+..++...
T Consensus       361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~~l~  440 (468)
T TIGR00788       361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLLPLP  440 (468)
T ss_pred             HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHH
Confidence            8888888888999999999999999999999999999999999998887776543    22333333 234444444444


Q ss_pred             HhhcccC
Q 021634          169 GALFLPE  175 (310)
Q Consensus       169 ~~~~~~e  175 (310)
                      ..+++|+
T Consensus       441 ~~~llP~  447 (468)
T TIGR00788       441 LLHLLPR  447 (468)
T ss_pred             HHHhCCC
Confidence            4457886

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.92  E-value=8.3e-09  Score=101.48  Aligned_cols=141  Identities=14%  Similarity=0.000  Sum_probs=112.2

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh------------------
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA------------------   81 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~------------------   81 (310)
                      .++.+.+|.++.+.+++.+.+.++..+++++.|+++|+.++++.+..+.++..++.+...+.                  
T Consensus       250 ~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  329 (1140)
T PRK06814        250 LLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFL  329 (1140)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhh
Confidence            44556689999999999999999999999999999998887776666666655555443332                  


Q ss_pred             --hhHHHHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhh
Q 021634           82 --VNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALA  159 (310)
Q Consensus        82 --~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~  159 (310)
                        .+.+.+++..++.|++.+...+...+++.+..|++.||+++++.+....+|..+++.+.+.+....  .++...+++.
T Consensus       330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~--~~~~~~~~~~  407 (1140)
T PRK06814        330 SKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG--FSIPWIILFI  407 (1140)
T ss_pred             cccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHH
Confidence              667778888899999999988899999999999999999999999999999999988877665321  2455555554


Q ss_pred             HHH
Q 021634          160 AVP  162 (310)
Q Consensus       160 ~~~  162 (310)
                      ++.
T Consensus       408 ~~~  410 (1140)
T PRK06814        408 ALA  410 (1140)
T ss_pred             HHH
Confidence            443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.91  E-value=1.3e-08  Score=86.78  Aligned_cols=116  Identities=20%  Similarity=0.310  Sum_probs=101.1

Q ss_pred             cccccccc-hhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHhhc
Q 021634           22 ISNYCKFD-SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV---NVYMLIFGRLLLGVG   97 (310)
Q Consensus        22 i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~r~l~G~~   97 (310)
                      +.+++|.+ ..+.+...+...++..++.++.|+++||+|+|+..........++.+......   +....++.-++.|++
T Consensus       233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  312 (352)
T PF07690_consen  233 LQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFG  312 (352)
T ss_dssp             CCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHH
T ss_pred             hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            57888889 89999999999999999999999999999998888877777777766655443   456666778889999


Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHH
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAAN  137 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  137 (310)
                      .+...+....++.|..|+++|+++.++.+....+|..++|
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  313 FGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999998886

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.91  E-value=2.1e-08  Score=89.05  Aligned_cols=154  Identities=16%  Similarity=0.075  Sum_probs=101.5

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhH--------HHHHHHHH--HHHHHHhhh-hhhHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPS--------VLMGGAAF--LAGSALGGA-AVNVYMLI   88 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~--------~~~~~~~~--~~~~~~~~~-~~~~~~l~   88 (310)
                      .++.+++|.+..+.+++.++..++..++.++.|+++||+++|+.        +..+....  .+..+.... ..+....+
T Consensus       286 ~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (465)
T TIGR00894       286 TFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTI  365 (465)
T ss_pred             HHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence            34566788999999999999999999999999999999875421        11111111  111111111 22333334


Q ss_pred             HHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHH
Q 021634           89 FGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL  168 (310)
Q Consensus        89 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~  168 (310)
                      +.-.+.+.+.+...+.......|..| +.+|.+.++.+....+|..++|.+.+.+.+.....+|+..|.+.++..++..+
T Consensus       366 ~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i  444 (465)
T TIGR00894       366 IILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVI  444 (465)
T ss_pred             HHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHH
Confidence            44445555444444444455556665 48999999999999999999998877665433223599999988877777666


Q ss_pred             Hhhccc
Q 021634          169 GALFLP  174 (310)
Q Consensus       169 ~~~~~~  174 (310)
                      ...+.+
T Consensus       445 ~~~~~~  450 (465)
T TIGR00894       445 FYLIFG  450 (465)
T ss_pred             Heeeee
Confidence            655543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.90  E-value=3.9e-08  Score=85.33  Aligned_cols=116  Identities=14%  Similarity=0.145  Sum_probs=79.9

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  101 (310)
                      .++++|.++.+.+.+.+...++..++.++.+++.||+|||+.+..+..+..++.+...+.++.+.....-.+.+.+.+..
T Consensus       230 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~  309 (392)
T PRK10473        230 LMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVG  309 (392)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999888888887777665554444444444444333


Q ss_pred             ccchhhhhhhcccccch-hhhhhHHHHHHHHHHHHHHHH
Q 021634          102 NQSVPLYLSEMAPARYR-GAINNGFQFSIGIGALAANFI  139 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~  139 (310)
                      .+.  ....+..|.++| +.+.+....+..+|..+++.+
T Consensus       310 ~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l  346 (392)
T PRK10473        310 FGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWL  346 (392)
T ss_pred             hHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHH
Confidence            322  333455555555 444444444445555554444

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.89  E-value=1.2e-08  Score=85.52  Aligned_cols=150  Identities=13%  Similarity=0.043  Sum_probs=115.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-------VNVYMLIFGRL   92 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~r~   92 (310)
                      .+++++|+.++.+.+.....+.+...+..+.+|+++||+|.++++........++..+.+..       .+.....+.-+
T Consensus       243 ~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l  322 (417)
T COG2223         243 MYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFL  322 (417)
T ss_pred             HHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHH
Confidence            45677899999999999999999999999999999999999999998888888887776655       34444444445


Q ss_pred             HHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634           93 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus        93 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      ..+++.|.....+..++..++| ++-|.+.++.....++|....|..-+...+..+  .+...|++...+.++..+..+.
T Consensus       323 ~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg--~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         323 ALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG--SYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             HHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555566666777775 477888999999999998777777555555444  5888888888887777766544

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.89  E-value=6.9e-09  Score=89.23  Aligned_cols=133  Identities=17%  Similarity=0.110  Sum_probs=95.5

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhC-chhH-HHHHHHH-HHHHHHHhhh--hhhHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG-RKPS-VLMGGAA-FLAGSALGGA--AVNVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~-~~~~~~~-~~~~~~~~~~--~~~~~~l~~~r~l~   94 (310)
                      ..+.+++|.++.+.+...+...++..++.++.|+++||.+ ||+. +...... ..++......  ..+.....+..++.
T Consensus       241 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (379)
T TIGR00881       241 LYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFAL  320 (379)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence            3455678899999999999999999999999999999864 3332 2222211 2222222222  23445555666777


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHH
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVS  155 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~  155 (310)
                      |.+.....+....+..|..|+++|+++.++.+....+|..+++.+.+.+.+.   .||++.
T Consensus       321 g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~  378 (379)
T TIGR00881       321 GFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG---FGWAGA  378 (379)
T ss_pred             HHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh---hccccc
Confidence            7665555566677889999999999999999999999999999998877653   457654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.89  E-value=5.6e-08  Score=83.98  Aligned_cols=149  Identities=18%  Similarity=0.238  Sum_probs=116.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-hhHHHHHH----HHHHHhhcccccc
Q 021634           28 FDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-VNVYMLIF----GRLLLGVGVGFAN  102 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-~~~~~l~~----~r~l~G~~~~~~~  102 (310)
                      .+.+..+.+.++..+.-.+.-...+++..|+|.|+++.++.+..++=..+.+.. ++.+...+    ...+.|+..+..+
T Consensus       240 ~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~  319 (400)
T PF03825_consen  240 YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFH  319 (400)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHH
Confidence            666777777777777778888999999999999999999999988877777766 44444333    3556999999999


Q ss_pred             cchhhhhhhcccccchhhhhhHHHH-HHHHHHHHHHHHHhhhcccCC---CchhHHHHHhhHHHHHHHHHHh-hcccCC
Q 021634          103 QSVPLYLSEMAPARYRGAINNGFQF-SIGIGALAANFINYGTEQIKG---GWGWRVSLALAAVPASILTLGA-LFLPET  176 (310)
Q Consensus       103 ~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~---~~~wr~~~~~~~~~~~~~~~~~-~~~~es  176 (310)
                      .....++.+..|++.|+++.++++. ..++|..++..+++.+.+..+   .+.|...+.+.++..++..++. ++++|+
T Consensus       320 ~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~  398 (400)
T PF03825_consen  320 AASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK  398 (400)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            9999999999999999999999875 578999999999998876543   2346666666666666555544 335554

>TIGR01272 gluP glucose/galactose transporter

Probab=98.88  E-value=4.9e-08  Score=81.75  Aligned_cols=130  Identities=11%  Similarity=0.052  Sum_probs=100.1

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccc
Q 021634           25 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQS  104 (310)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~  104 (310)
                      .+|+++++.+...+.+..+.++|.++.++++||+|+|+.+.++..+..++.++....++... ..+-++.|++.+..+|.
T Consensus       172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~  250 (310)
T TIGR01272       172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVA-MWFVLALGLFNSIMFPT  250 (310)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999988888888777765555444333 23556889999999999


Q ss_pred             hhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhH
Q 021634          105 VPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAA  160 (310)
Q Consensus       105 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~  160 (310)
                      ..+...+..|++ .+.+.++. ....+|..+.|.+-+.+.+.   .+.+..+++..
T Consensus       251 ~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~---~g~~~a~~v~~  301 (310)
T TIGR01272       251 IFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC---LGIQLAFALPV  301 (310)
T ss_pred             HHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh---ccchHHHHHHH
Confidence            998888887653 45556665 45668888899887766653   34667766433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.86  E-value=5.7e-08  Score=83.38  Aligned_cols=143  Identities=13%  Similarity=0.058  Sum_probs=93.0

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCc---hhHHHH-HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR---KPSVLM-GGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr---r~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      ++.+.+.+ .+...++..+...++   .++++||..|   |+.... ..++..+.....+...+....++.-.+.|++..
T Consensus       220 ~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  295 (368)
T TIGR00903       220 RPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLML  295 (368)
T ss_pred             HHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhh
Confidence            34456654 455555555555555   4677777654   343332 333334444444444444444555566777777


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccC
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPE  175 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~e  175 (310)
                      ..++....+.+|.+|++.|+++.++.+....+|..++|.+.+.+..     +-+..|.+.+++.++..+...++++
T Consensus       296 ~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-----~~~~~f~~~~~~~~i~~~~~~~~~~  366 (368)
T TIGR00903       296 PAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-----SAEAYFTFLAILITIAFAIALLLPN  366 (368)
T ss_pred             hhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            7777788899999999999999999999999999888888665542     4566777777777766655544454

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.85  E-value=1.3e-08  Score=88.98  Aligned_cols=153  Identities=16%  Similarity=0.156  Sum_probs=111.2

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhC-----chhHHHHHHHHHHHHHHHhhhh----hhHHHHHH
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG-----RKPSVLMGGAAFLAGSALGGAA----VNVYMLIF   89 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-----rr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~   89 (310)
                      .+.+.+++|+++++.....++..+... ..++.|.++|-+-     ||+-++++.++..++....+..    .+.....+
T Consensus        13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~   91 (433)
T PF03092_consen   13 YPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVV   91 (433)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHH
Confidence            466788999999999888777666554 4688899999762     5555566776665555544432    34556666


Q ss_pred             HHHHHhhcccccccchhhhhhhccc--ccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHH
Q 021634           90 GRLLLGVGVGFANQSVPLYLSEMAP--ARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT  167 (310)
Q Consensus        90 ~r~l~G~~~~~~~~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~  167 (310)
                      .-++..+|......+.-+++.|...  ++.||...+.......+|.+++..+++.+.+.   .+++..|.+.+++.++..
T Consensus        92 ~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~---~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   92 LLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS---FGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---CCCeEEehHHHHHHHHHH
Confidence            6777888888888888889999874  33478888888899999999999888776654   357888888777766665


Q ss_pred             HHhhcccC
Q 021634          168 LGALFLPE  175 (310)
Q Consensus       168 ~~~~~~~e  175 (310)
                      +..++++|
T Consensus       169 ~~~~~~~~  176 (433)
T PF03092_consen  169 IVALFLLE  176 (433)
T ss_pred             HHHHHhhh
Confidence            55555433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.85  E-value=1.3e-07  Score=84.07  Aligned_cols=117  Identities=13%  Similarity=0.095  Sum_probs=89.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHhhccccccc
Q 021634           29 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA-----AVNVYMLIFGRLLLGVGVGFANQ  103 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~  103 (310)
                      +++..+.+.+...++..++.+++++++||+|+|+.+..+..+.+++.+....     ..+.+.+++.-++.|++.+...+
T Consensus       264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~  343 (473)
T PRK10429        264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWV  343 (473)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777777888999999999999999999998888776666554332     34566667777888998888888


Q ss_pred             chhhhhhhcccc-------cchhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 021634          104 SVPLYLSEMAPA-------RYRGAINNGFQFSIGIGALAANFINYGTEQ  145 (310)
Q Consensus       104 ~~~~~~~~~~~~-------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (310)
                      ...++++|..+.       +..|...+......-+|..+++.+.+.+..
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999998662       223557888888888888888777665543

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.83  E-value=1.6e-07  Score=80.92  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=83.7

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh---h-hhhHHHHHHHHHHHhhc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG---A-AVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~l~~~r~l~G~~   97 (310)
                      ..+++|.++.+.++..+...++..++.++.|++.||+|||+.+..+..+..+..+...   . ..+++...++-.+.+.+
T Consensus       221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T PRK11102        221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGC  300 (377)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3456789999999999999999999999999999999999999888776544433222   1 22444444444444444


Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHH-HHHHHHHHHHHHh
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFS-IGIGALAANFINY  141 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~  141 (310)
                      .+........++.|..| ++|+++.+..... ..+|..+++.++.
T Consensus       301 ~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        301 VSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45555555666777765 7899988886543 5567777776654

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.81  E-value=5.3e-06  Score=72.68  Aligned_cols=116  Identities=6%  Similarity=-0.009  Sum_probs=85.6

Q ss_pred             chhHHHHHHHHHHHHHHHH-HhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh----h---------------------
Q 021634           29 DSQLLTSFTSSLYVAGLVA-SFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA----V---------------------   82 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~-~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~---------------------   82 (310)
                      ..+...++.+...+...+. .++.+++++|++|++++-.....+.....++++.    +                     
T Consensus        41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~  120 (472)
T TIGR00769        41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM  120 (472)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence            4467889999888877666 8999999999999998877666666555554433    1                     


Q ss_pred             ------hHHHHHHHHHHHhhccccccc-chhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021634           83 ------NVYMLIFGRLLLGVGVGFANQ-SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  144 (310)
Q Consensus        83 ------~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  144 (310)
                            +.|...+..+...+......+ .-+.+++|.++.++-.|..+++..+.++|.++++.+..++.
T Consensus       121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  122222333344444444444 67889999999999999999999999999999998877765

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.80  E-value=9.9e-08  Score=81.50  Aligned_cols=147  Identities=16%  Similarity=0.155  Sum_probs=121.0

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchh
Q 021634           27 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVP  106 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  106 (310)
                      +.++...|.+.+..-+.-++.-.+..++.+|+|.|+.++++..+..+=-.+++++++.+.+.+.+.+.|+-.+.......
T Consensus       255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~f  334 (412)
T PF01306_consen  255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAF  334 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccccchhhhhhH-HHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCC
Q 021634          107 LYLSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPET  176 (310)
Q Consensus       107 ~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es  176 (310)
                      .|+++.+|+|..++...+ .+....+|..+.+.+++.+.+.   .|.+..|++.+.+.+...+...+ ++++
T Consensus       335 kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~---~G~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  335 KYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR---IGFQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh---cCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence            999999998887777776 4678888988888888877753   57888888877777666655544 5443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09669 putative symporter YagG; Provisional

Probab=98.77  E-value=6.9e-07  Score=78.93  Aligned_cols=116  Identities=18%  Similarity=0.146  Sum_probs=86.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHhhcccccccchhh
Q 021634           30 SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA--AVNVYMLIFGRLLLGVGVGFANQSVPL  107 (310)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~  107 (310)
                      ++..+.+.....+...++.+++++++||+|+|+.+..+.++..++.....+  .++.+.+++..++.|++.+...+...+
T Consensus       263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~a  342 (444)
T PRK09669        263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWS  342 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334455566667777889999999999999999998887766654432222  356777778888999999999999999


Q ss_pred             hhhhccccc-------chhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 021634          108 YLSEMAPAR-------YRGAINNGFQFSIGIGALAANFINYGTEQ  145 (310)
Q Consensus       108 ~~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (310)
                      +++|..+.+       ..|...+..+....+|..+++.+++.+.+
T Consensus       343 m~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        343 MFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             HHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988632       23556778877888888888887776554

>PRK10133 L-fucose transporter; Provisional

Probab=98.77  E-value=1.4e-07  Score=83.04  Aligned_cols=136  Identities=7%  Similarity=-0.064  Sum_probs=102.1

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccc
Q 021634           23 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  102 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  102 (310)
                      ++.+|+++.+.++....+.++..++.++.+++.||+|||+++..+.++..++..+..+.++.. .+..-.+.|++.+..+
T Consensus       287 ~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~glg~~~i~  365 (438)
T PRK10133        287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV-GLIALTLCSAFMSIQY  365 (438)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999999999999999888877776666655555432 2445678899999999


Q ss_pred             cchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCch-hHHHHHhhHHHHH
Q 021634          103 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWG-WRVSLALAAVPAS  164 (310)
Q Consensus       103 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-wr~~~~~~~~~~~  164 (310)
                      |...+...|..|+ +.+.+.++.... .+|..++|.+.+.+.+.   .| -|..|++..+..+
T Consensus       366 P~~~s~a~~~~~~-~~~~as~l~~~~-~~g~~~~~~i~G~l~~~---~g~~~~~~~v~~~~~~  423 (438)
T PRK10133        366 PTIFSLGIKNLGQ-DTKYGSSFIVMT-IIGGGIVTPVMGFVSDA---AGNIPTAELIPALCFA  423 (438)
T ss_pred             HHHHHHHHcccch-hhccchhHHhHH-hccchHHHHHHHHHHHh---ccchHHHHHHHHHHHH
Confidence            9999999998765 456666766543 35666666666656543   23 5666665444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.74  E-value=2.1e-07  Score=81.31  Aligned_cols=134  Identities=13%  Similarity=-0.052  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh--hh----hhHHHHHHHHHHHhhcccccccchhhhhh
Q 021634           37 TSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG--AA----VNVYMLIFGRLLLGVGVGFANQSVPLYLS  110 (310)
Q Consensus        37 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~~~  110 (310)
                      ..+..+...+..+++|+++||+|+|+++.++.+...++.....  ..    .+++.+.+.-+...++.|........++.
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip  371 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIA  371 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhH
Confidence            4445677788899999999999999999988887777664322  11    24566666655655666777777788888


Q ss_pred             hcccc---------------------cchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHH
Q 021634          111 EMAPA---------------------RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG  169 (310)
Q Consensus       111 ~~~~~---------------------~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~  169 (310)
                      +++|+                     ++-|.+.|+......+|+.+.|.+-+...+..+  ++...|+...+..+++.+.
T Consensus       372 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g--~~~~~~~~~~~~~~~~~~~  449 (462)
T PRK15034        372 VIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTG--SPVGAMKVFLIFYIVCVLL  449 (462)
T ss_pred             HHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHH
Confidence            88874                     145677888888888888888866444444333  4777777777776666655


Q ss_pred             hhc
Q 021634          170 ALF  172 (310)
Q Consensus       170 ~~~  172 (310)
                      .++
T Consensus       450 ~w~  452 (462)
T PRK15034        450 TWL  452 (462)
T ss_pred             HHH
Confidence            544

>PRK11043 putative transporter; Provisional

Probab=98.73  E-value=3.2e-07  Score=79.87  Aligned_cols=125  Identities=10%  Similarity=-0.063  Sum_probs=92.5

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHh---hh--hhhHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GA--AVNVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~--~~~~~~l~~~r~l~   94 (310)
                      |.+.+++|.++.+.++......++..++.++.+++.||+|+|+.+........++.+..   ..  .++.+.+++...+.
T Consensus       227 p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (401)
T PRK11043        227 PFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVM  306 (401)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence            34456688999999998888888999999999999999999987665555544443322   11  34455555666777


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  145 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (310)
                      |++.+..++.......|..| ++|+++.++.+.....+...++.+.+.+.+
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        307 AAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            88888888887777777775 679999999998877777777777665543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.71  E-value=3.4e-07  Score=80.48  Aligned_cols=115  Identities=21%  Similarity=0.153  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHhhcccccccchhhh
Q 021634           31 QLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV--NVYMLIFGRLLLGVGVGFANQSVPLY  108 (310)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~  108 (310)
                      +..+.+..+..++..++.+++++++||+|+|+.+..+..+.+++.++..+.+  +.+.+++.-++.|++.+..+....++
T Consensus       260 ~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~  339 (428)
T PF13347_consen  260 GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM  339 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence            5678888899999999999999999999999999999999999999888776  89999999999999999999999999


Q ss_pred             hhhccccc-------chhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 021634          109 LSEMAPAR-------YRGAINNGFQFSIGIGALAANFINYGTEQ  145 (310)
Q Consensus       109 ~~~~~~~~-------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (310)
                      ++|..+.+       +.|...+..+....+|..+++.+.+.+..
T Consensus       340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            99998743       23778888888888888887777665543

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.68  E-value=1.3e-06  Score=75.68  Aligned_cols=121  Identities=19%  Similarity=0.206  Sum_probs=95.0

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHhhccc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAV--NVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~~   99 (310)
                      .+-.+|.++.+..+.......+..++.+++..+++|+|+|+++.++.++.+++.++..+.+  +.+.+++..++.+++.+
T Consensus       263 ~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~  342 (467)
T COG2211         263 VTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTG  342 (467)
T ss_pred             EEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh
Confidence            4445566667777778888888888899999999999999999999999999999887765  67888888999999999


Q ss_pred             ccccchhhhhhhcccccc-----h--hhhhhHHHHHHHHHHHHHHHHHhh
Q 021634          100 FANQSVPLYLSEMAPARY-----R--GAINNGFQFSIGIGALAANFINYG  142 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~-----r--~~~~~~~~~~~~~g~~~~~~~~~~  142 (310)
                      ...+...++++|..+-.+     |  |...+....+.=+|..++..+.++
T Consensus       343 ~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~  392 (467)
T COG2211         343 IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW  392 (467)
T ss_pred             ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988775321     2  555666666666666666555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.66  E-value=4.6e-07  Score=81.07  Aligned_cols=136  Identities=10%  Similarity=0.030  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHH----HhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhh---------HHHHHHHHHHHhhccccc
Q 021634           35 SFTSSLYVAGLVA----SFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN---------VYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        35 ~~~~~~~~~~~~~----~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~r~l~G~~~~~~  101 (310)
                      +..++..+...+.    ...++++.+|++.++.+.+|.++.+++.+..+.+.+         .+.++...++.|+|+...
T Consensus       320 ~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~  399 (500)
T PRK09584        320 QYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMI  399 (500)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHH
Confidence            3334444444444    444577777777778888999999999888776655         457788899999999999


Q ss_pred             ccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc--c-----CCCchhHHHHHhhHHHHHHHHHHh
Q 021634          102 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ--I-----KGGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~--~-----~~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                      .|....++.+..|++.||+.+|.+.....+|..++..+......  .     ....+....|...++.+++..+..
T Consensus       400 ~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~  475 (500)
T PRK09584        400 SGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLM  475 (500)
T ss_pred             hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888888887777542221  0     001135677777666655444333

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.63  E-value=1.2e-06  Score=64.69  Aligned_cols=111  Identities=19%  Similarity=0.136  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhhc
Q 021634           33 LTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEM  112 (310)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~  112 (310)
                      --.-.++.+....+.+++.+.+.+++|.|+.+++|.+...+-.... +-++.+.++.+-.+.|++.+..++....++.+.
T Consensus        39 G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   39 GYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSY  117 (156)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence            3444566667778888999999999999999999999988655543 556778889999999999999999999999999


Q ss_pred             ccccchhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021634          113 APARYRGAINNGFQFSIGIGALAANFINYGTE  144 (310)
Q Consensus       113 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  144 (310)
                      .++++|++..+++......+.++|.++..++.
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~  149 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLFFIF  149 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888887765543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.60  E-value=1.3e-05  Score=69.56  Aligned_cols=108  Identities=19%  Similarity=0.135  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhhccccc
Q 021634           37 TSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPAR  116 (310)
Q Consensus        37 ~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~  116 (310)
                      .++.+....+++++.+.+.|+.|.|..+.++........+..-+. |-+-++.+..+.|+|.+..+.....|++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            677788889999999999999999999999999988887766544 4666788899999999999999999999999999


Q ss_pred             chhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 021634          117 YRGAINNGFQFSIGIGALAANFINYGTEQ  145 (310)
Q Consensus       117 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (310)
                      .+.+..++.......+.++|..+-..+..
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~  163 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQ  163 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence            99999999888888888888777554443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.55  E-value=1.6e-06  Score=77.11  Aligned_cols=137  Identities=13%  Similarity=0.074  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhH----HHHhh-hCchhHH--HHHHHHHHHHHHHhhh---------hhhHHHHHHHHHHHhh
Q 021634           33 LTSFTSSLYVAGLVASFVAS----SVTRA-FGRKPSV--LMGGAAFLAGSALGGA---------AVNVYMLIFGRLLLGV   96 (310)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~g----~l~dr-~Grr~~~--~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~l~G~   96 (310)
                      .+++.++..+...+.+++..    ++.+| .+++...  .+|.++.+++....++         ..|++.+++..++.++
T Consensus       314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~  393 (475)
T TIGR00924       314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL  393 (475)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            45666677777777766655    44544 3334444  6788888887776654         4688999999999999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      |+....|....++++..|++.||++++++.....+|..+++.+.......   .+|...|...++..++..+..++
T Consensus       394 ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  466 (475)
T TIGR00924       394 GELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP---QGVTGVFGKIGLVTLLVGVVMAL  466 (475)
T ss_pred             HHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cchhhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998887655432   35777777766666655554433

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.53  E-value=4.5e-06  Score=75.15  Aligned_cols=154  Identities=17%  Similarity=0.079  Sum_probs=94.8

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhH-------------HH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNV-------------YM   86 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~-------------~~   86 (310)
                      +.+-++.+.+.+. .+...+..+...++..+...+.||+|||+.++.+...+.++.++.+.....             ..
T Consensus       319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (513)
T KOG0254|consen  319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLA  397 (513)
T ss_pred             HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHH
Confidence            3344455555443 555666677778888888999999999999999999999998877654211             12


Q ss_pred             HHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHH
Q 021634           87 LIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL  166 (310)
Q Consensus        87 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~  166 (310)
                      +...-+..........++...+.+|.+|.+.|+++.++......+...+....-......   .++...|...+..+.+.
T Consensus       398 ~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~---~~~~~~f~~f~~~~~~~  474 (513)
T KOG0254|consen  398 IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA---LGIGGTFGYFGGICLLS  474 (513)
T ss_pred             HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---ccccchHHHHHHHHHHH
Confidence            222223333333334556667889999999999988887766655544433322112211   11234444444444433


Q ss_pred             HH--HhhcccCCc
Q 021634          167 TL--GALFLPETP  177 (310)
Q Consensus       167 ~~--~~~~~~es~  177 (310)
                      ..  ..+++||+.
T Consensus       475 ~~~fv~~~~pETk  487 (513)
T KOG0254|consen  475 LIIFVFFFVPETK  487 (513)
T ss_pred             HHHHheEEcccCC
Confidence            33  556689974

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.51  E-value=3.4e-06  Score=69.80  Aligned_cols=149  Identities=18%  Similarity=0.119  Sum_probs=115.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh-CchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      |.+-.|-|+|..+.|++.+...+....+++....+++|. .+|+..+....+..++.+.+.+.+.-..+.. -++.|+|.
T Consensus       232 P~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~  310 (395)
T COG2807         232 PAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQ  310 (395)
T ss_pred             HHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCcc
Confidence            566677899999999999999999999999999999976 5788888888888888887777655443333 49999999


Q ss_pred             cccccchhhhhhhcccccc-hhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh
Q 021634           99 GFANQSVPLYLSEMAPARY-RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  171 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  171 (310)
                      |..++....++.+..+..+ -++..++.+...-+=...+|.+.+++.+..+  +|+......+...+...+.-+
T Consensus       311 G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~g--sw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         311 GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATG--SWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcC--ChHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988876544 4566666666666666778888888877665  688887776666665554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.50  E-value=3.7e-07  Score=78.36  Aligned_cols=112  Identities=15%  Similarity=0.082  Sum_probs=83.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh--hh--hHHHHHHHHHHHh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA--AV--NVYMLIFGRLLLG   95 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~--~~--~~~~l~~~r~l~G   95 (310)
                      .++++.+|.++.+.+.+.+...+...++.++.|+++||+|||+.+..+......+..+..+  ..  +.+...+.-.+.+
T Consensus       250 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (366)
T TIGR00886       250 MFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALF  329 (366)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            3455678999999999999999999999999999999999998887777666665554433  22  4555445555555


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhHHHHHHHHH
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIG  132 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  132 (310)
                      ++.|...+....++.|..| +++|.+.|+.+....+|
T Consensus       330 ~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       330 FFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            5556666667777888886 68999999887766554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.50  E-value=4.6e-06  Score=72.49  Aligned_cols=123  Identities=15%  Similarity=0.046  Sum_probs=91.5

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHH-HHHHHhhh--hhhHHHHHHHHHHHhhcc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFL-AGSALGGA--AVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~-~~~~~~~~--~~~~~~l~~~r~l~G~~~   98 (310)
                      +++.+|.++.+.+++.....++..+++++.+++.||++++........... +.......  ..+.+.+....++.|++.
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  313 (394)
T PRK11652        234 MGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGA  313 (394)
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            344578899999999988889999999999999999984433322222211 21111111  235566777789999999


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  145 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (310)
                      +...+....+..|..| ++++.+.++.+....+|..+++.+++.+..
T Consensus       314 ~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        314 GMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            9889999998999886 578999999999999999999998776653

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.44  E-value=1.4e-06  Score=56.65  Aligned_cols=75  Identities=12%  Similarity=0.059  Sum_probs=66.8

Q ss_pred             hHhhhccccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 021634           12 VHRKMKEDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLI   88 (310)
Q Consensus        12 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (310)
                      .+.++.  |.+++|.++|.++.+++.+.+++|+.+|++...++.++..+++.+..+.+...+..+.+++.++.+.+.
T Consensus        10 ayTplL--P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~   84 (85)
T PF06779_consen   10 AYTPLL--PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS   84 (85)
T ss_pred             HHHhHh--HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence            344443  889999999999999999999999999999999999998889999999999999999999988877653

Note that many members are hypothetical proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.42  E-value=4.2e-09  Score=93.13  Aligned_cols=152  Identities=18%  Similarity=0.111  Sum_probs=94.5

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh--h--h-hh-----HHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG--A--A-VN-----VYMLIF   89 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~--~--~-~~-----~~~l~~   89 (310)
                      +.+.++.+.++.  -.......+...++.++...+.||+|||+.++.+.++.+++.+..+  .  . ++     ...+..
T Consensus       277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  354 (451)
T PF00083_consen  277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVF  354 (451)
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccee
Confidence            555666666666  2233344455567777888999999999999999988888877664  1  1 11     122222


Q ss_pred             HHHHHhhccc-ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHH-HH
Q 021634           90 GRLLLGVGVG-FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASI-LT  167 (310)
Q Consensus        90 ~r~l~G~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~-~~  167 (310)
                      . .+...+.+ +..+....+..|.+|.+.|+++.++......++..+++.+...+.+.   .+-...+.+.+.+.++ ..
T Consensus       355 ~-~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~i~~~~~~i~~i  430 (451)
T PF00083_consen  355 L-ALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN---LGGWGVFLIFAGVCLIAII  430 (451)
T ss_pred             e-eecccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccchhhHHHHHHHHh
Confidence            2 22222222 33456668889999999999999998888888877777664333322   2212334444444444 34


Q ss_pred             HHhhcccCCc
Q 021634          168 LGALFLPETP  177 (310)
Q Consensus       168 ~~~~~~~es~  177 (310)
                      +..+++||+.
T Consensus       431 ~~~~~lpET~  440 (451)
T PF00083_consen  431 FVYFFLPETK  440 (451)
T ss_pred             heeEEEeeCC
Confidence            4556799984

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.40  E-value=3.4e-07  Score=79.20  Aligned_cols=144  Identities=14%  Similarity=0.119  Sum_probs=117.7

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccch
Q 021634           26 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSV  105 (310)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  105 (310)
                      .+-.+...|........+-++.-++.+.+.+|+|+-+++.+++.+..+=.+..++.+|.|..+...+++|+..+..+...
T Consensus       401 ~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~  480 (618)
T KOG3762|consen  401 LGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAI  480 (618)
T ss_pred             cCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHH
Confidence            33344445556666677778888899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcccccchhhhhhHHH-HHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634          106 PLYLSEMAPARYRGAINNGFQ-FSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus       106 ~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      .+|++...||+-|..+.++.+ ...++|--+|.++++.+...   ++=|..|.+.++.+++.++....
T Consensus       481 ~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~---fg~~ttf~~~giAcl~~l~~~~~  545 (618)
T KOG3762|consen  481 ISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVER---FGARTTFRIFGIACLVTLALFIS  545 (618)
T ss_pred             HHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhhee---ehhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998866 45566777777777766554   45678888878777776655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.40  E-value=4.9e-06  Score=74.22  Aligned_cols=138  Identities=12%  Similarity=0.060  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhCchhH-------HHHHHHHHHHHHHHhh-----h-----hhhHHHHHHHHHHHhh
Q 021634           34 TSFTSSLYVAGLVASFVASSVTRAFGRKPS-------VLMGGAAFLAGSALGG-----A-----AVNVYMLIFGRLLLGV   96 (310)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~-------~~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~r~l~G~   96 (310)
                      .++.+...+...+.+++.+++.||.|+|+.       +.+|.++.+++.+..+     +     ..+.+.++..-++.|+
T Consensus       312 ~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~  391 (489)
T PRK10207        312 VSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSL  391 (489)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence            444555566677888889999999999873       6677777666654221     1     1356777788999999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCC-------CchhHHHHHhhHHHHHHHHHH
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG-------GWGWRVSLALAAVPASILTLG  169 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~wr~~~~~~~~~~~~~~~~  169 (310)
                      |++...+....++.+..|++.++.+++++.....+|..++..++.......+       .....+.|...++..++..+.
T Consensus       392 Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~  471 (489)
T PRK10207        392 GELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVV  471 (489)
T ss_pred             HHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888754421110       012445666555555544444


Q ss_pred             hh
Q 021634          170 AL  171 (310)
Q Consensus       170 ~~  171 (310)
                      .+
T Consensus       472 ~~  473 (489)
T PRK10207        472 MA  473 (489)
T ss_pred             HH
Confidence            43

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.39  E-value=5.9e-06  Score=72.16  Aligned_cols=130  Identities=8%  Similarity=-0.075  Sum_probs=95.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchh
Q 021634           27 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVP  106 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~  106 (310)
                      +.+....+...+.+..+..+|.++.+++.||+++|+++.++.++..+..++....++... ..+-.+.|++.+..+|...
T Consensus       265 ~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~-~~~l~~~glf~s~~fp~i~  343 (410)
T TIGR00885       265 GMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG-LYCLTLCSAFMSLMFPTIY  343 (410)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHHHHHHHH
Confidence            334455555666777888999999999999999999999998888888888877766544 5666788888888899999


Q ss_pred             hhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCC--Cc-hhHHHHHhh
Q 021634          107 LYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG--GW-GWRVSLALA  159 (310)
Q Consensus       107 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~-~wr~~~~~~  159 (310)
                      .+..+..+++.+.....+.. + .+|..+.|++.+.+.+..+  +. +.+..|++.
T Consensus       344 sl~~~~~g~~~~~~s~~l~~-~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~  397 (410)
T TIGR00885       344 GIALKGLGQDTKYGAAGLVM-A-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILP  397 (410)
T ss_pred             HHHHhhhhhhhhhhHHHHHH-H-HhccchHHHHHHHHHHHhcccccCccchHHHHH
Confidence            99999997665433333333 3 3899999999888876321  11 355666653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11462 putative transporter; Provisional

Probab=98.37  E-value=2e-05  Score=69.90  Aligned_cols=115  Identities=14%  Similarity=0.050  Sum_probs=72.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHhhcccccccchhh
Q 021634           30 SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA--VNVYMLIFGRLLLGVGVGFANQSVPL  107 (310)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~  107 (310)
                      ++..+.+.+.+.++.+++.+++++++||+|+|+.+..+..+..+..++..+.  .+...+.+.-++.|++.+...+....
T Consensus       262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~  341 (460)
T PRK11462        262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV  341 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566777888889999999999999999998775555444433333222  22223344456677777666666677


Q ss_pred             hhhhccccc-----ch--hhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021634          108 YLSEMAPAR-----YR--GAINNGFQFSIGIGALAANFINYGTE  144 (310)
Q Consensus       108 ~~~~~~~~~-----~r--~~~~~~~~~~~~~g~~~~~~~~~~~~  144 (310)
                      +++|..+.+     +|  |...+......-+|..+++.+++.+.
T Consensus       342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL  385 (460)
T PRK11462        342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWML  385 (460)
T ss_pred             HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777776521     22  44456655666666666666555443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.34  E-value=0.00014  Score=63.19  Aligned_cols=256  Identities=10%  Similarity=0.005  Sum_probs=128.8

Q ss_pred             HHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh------h--h----hHHH---HHHHHHHHhhcccc-cccc
Q 021634           41 YVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA------A--V----NVYM---LIFGRLLLGVGVGF-ANQS  104 (310)
Q Consensus        41 ~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~--~----~~~~---l~~~r~l~G~~~~~-~~~~  104 (310)
                      .+..++.++..|.+.||..|.+++..+.+..-++....+.      .  .    +.+.   +++.-.+.|.-... ....
T Consensus        48 ~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~  127 (432)
T PF06963_consen   48 SLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIAN  127 (432)
T ss_pred             HHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3455677888899999999999887766554444332221      1  1    1121   12222222211111 0111


Q ss_pred             hhhhhhhcc------cccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHH-hhcc---c
Q 021634          105 VPLYLSEMA------PARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG-ALFL---P  174 (310)
Q Consensus       105 ~~~~~~~~~------~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~-~~~~---~  174 (310)
                      ....=.||.      +++.+.+..+...-.-.+.-+++|++.+.+...   .+.+....+.+...++.... ++++   .
T Consensus       128 ~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~---~s~~~~~~~i~~~N~~S~~vEy~~l~~VY  204 (432)
T PF06963_consen  128 TIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTF---ASPVIAAIFIAGWNLASVFVEYFLLARVY  204 (432)
T ss_pred             hheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111123442      345556777777777888888888887766543   34666555555555444332 2221   1


Q ss_pred             CCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHH
Q 021634          175 ETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVI  254 (310)
Q Consensus       175 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      +..+.+..++++.++.......  ...+.+......+...+.-++....|+..+++    +.+...+...+.+++ ...+
T Consensus       205 ~~~P~L~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q----~vflas~alalLY~T-VLsf  277 (432)
T PF06963_consen  205 NSVPALAVKKRSSESESSSDEE--SSSESSSDPSILKRLWNPLRTIIRGWRTYFRQ----PVFLASFALALLYFT-VLSF  277 (432)
T ss_pred             HhChHhcCCCCCcccccccccc--ccccccchhhHHHHHHHHHHHHhccHHHHHhC----HHHHHHHHHHHHHHH-HhcC
Confidence            1111121111111110000000  00000000000000000111112344444443    333333333333332 2334


Q ss_pred             HHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          255 AFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       255 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      ......|+.+.|+++...+.+-....+.++.|.+...+  +.+|+|..+.-+.+
T Consensus       278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~--l~~riGlvr~G~~~  329 (432)
T PF06963_consen  278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPW--LMKRIGLVRAGLWS  329 (432)
T ss_pred             cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchhhHHHH
Confidence            66677788888999999999999999999999999999  99999987765554

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.34  E-value=1.2e-06  Score=74.45  Aligned_cols=124  Identities=17%  Similarity=0.221  Sum_probs=93.6

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHh----hhCchhHHHH-HHHHHHHHHHHhhhhhhH----------
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR----AFGRKPSVLM-GGAAFLAGSALGGAAVNV----------   84 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~Grr~~~~~-~~~~~~~~~~~~~~~~~~----------   84 (310)
                      +....++|++.+..+.+-....+...+.+++.|..+|    ||||||.++. +.....++.++..++.++          
T Consensus        56 tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~  135 (498)
T KOG0637|consen   56 TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERK  135 (498)
T ss_pred             cHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCccc
Confidence            4455678888888888888888888999999999999    5898776654 555666666666665332          


Q ss_pred             -------HHHHHHHHHHhhcccccccchhhhhhhcccccchhh-hhhHHHHHHHHHHHHHHHHHhhh
Q 021634           85 -------YMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGA-INNGFQFSIGIGALAANFINYGT  143 (310)
Q Consensus        85 -------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~g~~~~~~~~~~~  143 (310)
                             ..++++--+.-++....+..+-+++.|...++++-+ +.+++....++|..+|..++.+.
T Consensus       136 ~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  136 PVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             ccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence                   333444445555666788999999999998777766 99999999999999988877543

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.33  E-value=4.2e-06  Score=73.59  Aligned_cols=153  Identities=13%  Similarity=0.108  Sum_probs=102.4

Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCc--------hhHH-HHHHHHHHHHHHHhhhhhh--H-HH
Q 021634           19 DTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGR--------KPSV-LMGGAAFLAGSALGGAAVN--V-YM   86 (310)
Q Consensus        19 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Gr--------r~~~-~~~~~~~~~~~~~~~~~~~--~-~~   86 (310)
                      ..++.+-++.+..+.|+++++..+.+.+..+++|.++||.-+        ||++ .++....+++.+..++.++  . ..
T Consensus       282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a  361 (466)
T KOG2532|consen  282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLA  361 (466)
T ss_pred             hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHH
Confidence            456777889999999999999999999999999999998754        2222 3444445555555555542  2 12


Q ss_pred             HHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHH
Q 021634           87 LIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL  166 (310)
Q Consensus        87 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~  166 (310)
                      +...-+..++ .|...+....-..|. .|++-+..+++.+....+..+++|.+.+.+........||.+|++.+++.++.
T Consensus       362 ~~~l~~~~~~-~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~  439 (466)
T KOG2532|consen  362 VILLTIAIGL-SGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVG  439 (466)
T ss_pred             HHHHHHHHHH-cccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            2222222222 122222222222332 46778899999999999999999999877765223458999999988888777


Q ss_pred             HHHhhcc
Q 021634          167 TLGALFL  173 (310)
Q Consensus       167 ~~~~~~~  173 (310)
                      .+.+.++
T Consensus       440 ~i~f~~f  446 (466)
T KOG2532|consen  440 NIIFLFF  446 (466)
T ss_pred             chheeEe
Confidence            6555444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.33  E-value=2e-05  Score=66.74  Aligned_cols=152  Identities=16%  Similarity=0.112  Sum_probs=123.7

Q ss_pred             cccccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHh-hhCchhHHHHHHHHHHHHHHHhh---hhhhHHHHHHHHHH
Q 021634           18 EDTKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR-AFGRKPSVLMGGAAFLAGSALGG---AAVNVYMLIFGRLL   93 (310)
Q Consensus        18 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-r~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~r~l   93 (310)
                      -+|+=.+-||++..+...++.....|..++-...|++.. |.++|+.-.+|+....++..+..   ...+.+.+..+-++
T Consensus       231 LEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l  310 (403)
T PF03209_consen  231 LEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFL  310 (403)
T ss_pred             cCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            368888899999999999999999999999999999877 67788887788877777765543   34678888899999


Q ss_pred             HhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc----C---CCchhHHHHHhhHHHHHHH
Q 021634           94 LGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI----K---GGWGWRVSLALAAVPASIL  166 (310)
Q Consensus        94 ~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~---~~~~wr~~~~~~~~~~~~~  166 (310)
                      .|++.|.......+.+-|...+++.|..+|.+.....++..++..+++.+.+.    .   ...+|..+|.+.++..++.
T Consensus       311 ~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a  390 (403)
T PF03209_consen  311 LGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAA  390 (403)
T ss_pred             HHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHH
Confidence            99999998888889999999999999999999999988888888888766542    1   2346777887777666555


Q ss_pred             HHH
Q 021634          167 TLG  169 (310)
Q Consensus       167 ~~~  169 (310)
                      ...
T Consensus       391 ~~l  393 (403)
T PF03209_consen  391 LVL  393 (403)
T ss_pred             HHH
Confidence            443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.32  E-value=4.7e-07  Score=76.93  Aligned_cols=134  Identities=19%  Similarity=0.035  Sum_probs=99.0

Q ss_pred             HHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhh-H---HHHHHHHHHHhhcc-cccccchhhhhhhcccccchh
Q 021634           45 LVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVN-V---YMLIFGRLLLGVGV-GFANQSVPLYLSEMAPARYRG  119 (310)
Q Consensus        45 ~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~-~---~~l~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~~r~  119 (310)
                      ..|-.+...+.|+.|||++.+.|.+++.+..+..+...+ .   ..+++...+..++. -+.......+-+|.+|.+.|+
T Consensus       362 vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~  441 (538)
T KOG0252|consen  362 VPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRS  441 (538)
T ss_pred             CCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhh
Confidence            446677788999999999999999999999998888766 1   12222222222221 112344556679999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhcc--cCCCchhHHHHHhhHHHHHHHHHHhhcccCCch
Q 021634          120 AINNGFQFSIGIGALAANFINYGTEQ--IKGGWGWRVSLALAAVPASILTLGALFLPETPN  178 (310)
Q Consensus       120 ~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~  178 (310)
                      ..-++.....-+|.+++...-..+.+  .....+.|.++++.+.+.++..+..+++||+.+
T Consensus       442 t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  442 TCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             hhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence            99999999988898888777444443  122457899999999999998888899998853

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.28  E-value=5.7e-06  Score=53.35  Aligned_cols=64  Identities=14%  Similarity=0.145  Sum_probs=56.6

Q ss_pred             HHHHHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          242 IPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      ..++..+.+...+..|.|.++++.|+++.+.+.+.++..+..+++.++.+.  ++||.++++..+.
T Consensus         7 ~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~--laDk~~~~~~~l~   70 (77)
T PF12832_consen    7 AFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGF--LADKFGKRKVILL   70 (77)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCccHHHHH
Confidence            445556667778899999999999999999999999999999999999999  9999999887664

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.25  E-value=2.7e-05  Score=68.64  Aligned_cols=143  Identities=17%  Similarity=0.042  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhC-chhHHHHHHHHHHHHHHHhhhhhh---------------------HHHHHHHH
Q 021634           34 TSFTSSLYVAGLVASFVASSVTRAFG-RKPSVLMGGAAFLAGSALGGAAVN---------------------VYMLIFGR   91 (310)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~~~r   91 (310)
                      .+....+.+...+.+++.-++.+|+| ||++..++.++..++.....+.++                     .+..++.-
T Consensus       308 ~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  387 (477)
T TIGR01301       308 AFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVF  387 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHH
Confidence            34444455555677788888999999 477778898888888777665443                     26667778


Q ss_pred             HHHhhcccccccchhhhhhhcccc--cchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHH
Q 021634           92 LLLGVGVGFANQSVPLYLSEMAPA--RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG  169 (310)
Q Consensus        92 ~l~G~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~  169 (310)
                      .+.|+..+..+..-.+++++..++  ++.|..+|+++.+..+..++..+..+.+.+..+. +-.+.+.+.++..++..+.
T Consensus       388 ~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~-~~~~~~~~~gv~~~~aa~~  466 (477)
T TIGR01301       388 AILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG-GNLPAFVVGAVAAFVSGLL  466 (477)
T ss_pred             HHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC-CCeeHHHHHHHHHHHHHHH
Confidence            899999999999999999999985  4459999999999999998888776664444332 3456788888888887766


Q ss_pred             hhc-ccCCc
Q 021634          170 ALF-LPETP  177 (310)
Q Consensus       170 ~~~-~~es~  177 (310)
                      .++ +|+.+
T Consensus       467 ~~~~~~~~~  475 (477)
T TIGR01301       467 ALILLPRPR  475 (477)
T ss_pred             HHHhCCCCC
Confidence            655 67654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.21  E-value=1.4e-06  Score=72.73  Aligned_cols=144  Identities=13%  Similarity=0.027  Sum_probs=109.3

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhC--chhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG--RKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  101 (310)
                      |.+..+..+.+...--..+.+.+++.+.|.++||++  |-.....+++..++++....+++++..+++-++..|++.+..
T Consensus       299 e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~  378 (464)
T KOG3764|consen  299 ETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLA  378 (464)
T ss_pred             HhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHH
Confidence            344434446666666678889999999999999999  544555677777777777889999999999999888888777


Q ss_pred             ccchhhhhhhccccc------chhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHh
Q 021634          102 NQSVPLYLSEMAPAR------YRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~------~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                      .........+..+.+      .-|...++...++.+|..++|.+++.+.+.   .|++|...+.++..++..-+.
T Consensus       379 dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~---iGF~wl~~iig~~n~iyapvl  450 (464)
T KOG3764|consen  379 DASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA---IGFEWLMTIIGILNLIYAPVL  450 (464)
T ss_pred             HHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee---hhHHHHHHHHHHHHHHHHHHH
Confidence            666655555555443      346788899999999999999998887754   468888877777776654443

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.17  E-value=0.0022  Score=56.85  Aligned_cols=266  Identities=12%  Similarity=0.101  Sum_probs=139.4

Q ss_pred             hhHhhhccccccccccccchhHHHHHHHHHHH-HHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh--------
Q 021634           11 EVHRKMKEDTKISNYCKFDSQLLTSFTSSLYV-AGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA--------   81 (310)
Q Consensus        11 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~--------   81 (310)
                      ...+++. |.-+....  +++.+..+-....+ ...+...+...+++|++|.+++-+....+.....+.++.        
T Consensus        41 ~~lR~~K-D~lvvt~~--gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~l  117 (491)
T PF03219_consen   41 TILRDLK-DTLVVTAQ--GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDIL  117 (491)
T ss_pred             HHHHHhc-CeEEEecC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhc
Confidence            3334333 44444444  56667777775555 445667889999999999998876665555554444431        


Q ss_pred             -h----------------------hHHHHHHHHHHHhhccccccc-chhhhhhhcccccchhhhhhHHHHHHHHHHHHHH
Q 021634           82 -V----------------------NVYMLIFGRLLLGVGVGFANQ-SVPLYLSEMAPARYRGAINNGFQFSIGIGALAAN  137 (310)
Q Consensus        82 -~----------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  137 (310)
                       +                      +.|...+..+..-+-.....+ .-+.+.+|.++.+|-.|..+++..+.++|.++++
T Consensus       118 hp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG  197 (491)
T PF03219_consen  118 HPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSG  197 (491)
T ss_pred             CCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0                      112222222222222233333 4578889999999999999999999999999988


Q ss_pred             HHHhhhcc------cCCCchhHHHHHh----hHHHHHHHHHHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHH
Q 021634          138 FINYGTEQ------IKGGWGWRVSLAL----AAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEF  207 (310)
Q Consensus       138 ~~~~~~~~------~~~~~~wr~~~~~----~~~~~~~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (310)
                      .+...+.+      ..+...|......    ..+.+++.......+.+..   ..++. .                  . 
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v---l~~~~-~------------------~-  254 (491)
T PF03219_consen  198 QLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILLYRYMNKNV---LTDPR-F------------------Y-  254 (491)
T ss_pred             HHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCccc-c------------------c-
Confidence            88776666      1122346543321    2222222222222222110   00000 0                  0 


Q ss_pred             HHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCchh----HHHHHHHHHhhh
Q 021634          208 DDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLK----VCQLSKWIECGG  283 (310)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~  283 (310)
                        ..+..+++++.+.+.++.++...+.+.+..+++.........+.+...--..+++.--++.+    .+......++..
T Consensus       255 --~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivt  332 (491)
T PF03219_consen  255 --PSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVT  332 (491)
T ss_pred             --hhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH
Confidence              00111223333444555554444455555555555554444454444444444433223322    233344445555


Q ss_pred             hhhhhHHHHHHHHHHhccchhhh
Q 021634          284 SIGFGRNMWVKWMNRVRWRKLDI  306 (310)
Q Consensus       284 ~~g~~~~~~~~l~d~~g~r~~~~  306 (310)
                      ++-.++++.  +.+|+|.+...+
T Consensus       333 ii~~~l~~~--iir~~GW~~~Al  353 (491)
T PF03219_consen  333 IIMMFLSSN--IIRRFGWRTAAL  353 (491)
T ss_pred             HHHHHHHHH--HHHHhhHHHHHH
Confidence            555566666  788888766544

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.10  E-value=6.5e-05  Score=67.88  Aligned_cols=133  Identities=23%  Similarity=0.188  Sum_probs=95.6

Q ss_pred             HHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHHhhcccccccchhhhhhhcccccchh
Q 021634           43 AGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYM---LIFGRLLLGVGVGFANQSVPLYLSEMAPARYRG  119 (310)
Q Consensus        43 ~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~  119 (310)
                      .........+...|++|||.....+.++..++.+..++......   ..+...+...+.+..+.....+.+|.+|...|.
T Consensus       362 ~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~  441 (521)
T KOG0255|consen  362 VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRN  441 (521)
T ss_pred             HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence            44555566688999999999999999999999998887754332   444555555666666777799999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHH-HHHhhcccCCchh
Q 021634          120 AINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASIL-TLGALFLPETPNS  179 (310)
Q Consensus       120 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~-~~~~~~~~es~~~  179 (310)
                      .+.+.......+|.+++|.+.........  .+...  +.+....+. .+...++||+...
T Consensus       442 ~~~~~~~~~~~~~~i~ap~~~~~~~~~~~--~~~~~--~~~~~~~l~~~~~~~~lpet~~~  498 (521)
T KOG0255|consen  442 TAVGAISAAARLGSILAPLFPLLLRQMFP--LLGLI--LFGWLALLLGLLSLLLLPETKGK  498 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcc--cchHH--HHHHHHHHHHHHHHhcCcccCCC
Confidence            99999999999999999998755443211  12111  123333333 3444779998643

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.09  E-value=2.3e-05  Score=64.46  Aligned_cols=158  Identities=14%  Similarity=0.070  Sum_probs=110.6

Q ss_pred             cccccchhHHH-HHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccc
Q 021634           24 NYCKFDSQLLT-SFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  102 (310)
Q Consensus        24 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  102 (310)
                      .+.++++.+.. -+.-...-.+.+.-++.=.+.|-.-.|++++.-.+.....-.+.-+.++.+.+-+.-++.|... ...
T Consensus        34 p~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~t-AaE  112 (433)
T KOG3810|consen   34 PDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPAT-AAE  112 (433)
T ss_pred             CCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHH-HHH
Confidence            45566665542 2222333344555556667899999999998877777777777888999999888888888864 346


Q ss_pred             cchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcccCCchhhHh
Q 021634          103 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQ  182 (310)
Q Consensus       103 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~~~~  182 (310)
                      ...++|+-+..+++++-++.+..-...-.|...+..++-.+... +..+++..-.+......+.....+++|..+|....
T Consensus       113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~-~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f  191 (433)
T KOG3810|consen  113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL-ETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYF  191 (433)
T ss_pred             HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh-cccchhhhchhhHHHHHHHHHHHhhCCCCchhhhh
Confidence            77788999999999999999888888777777777776655443 22456666666555555666667778776654443


Q ss_pred             c
Q 021634          183 R  183 (310)
Q Consensus       183 ~  183 (310)
                      +
T Consensus       192 ~  192 (433)
T KOG3810|consen  192 H  192 (433)
T ss_pred             h
Confidence            3

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.08  E-value=1.6e-05  Score=51.23  Aligned_cols=48  Identities=10%  Similarity=0.171  Sum_probs=42.9

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHH
Q 021634           23 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAA   70 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~   70 (310)
                      .++.|+++.++|.+.++..+...++++++|.++||+|+++.++.....
T Consensus        27 ~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   27 LKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            346899999999999999999999999999999999998887766554

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.02  E-value=5.9e-05  Score=63.56  Aligned_cols=129  Identities=10%  Similarity=0.079  Sum_probs=102.3

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccc
Q 021634           23 SNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFAN  102 (310)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  102 (310)
                      .+..|.++.+.+...+.+..+.++|.++..++..|+...|.+.+..+...+-++..+++++...+ .+-++.|++.+..+
T Consensus       264 ~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~-~~l~~ig~F~simf  342 (422)
T COG0738         264 EELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL-YALFLIGLFNSIMF  342 (422)
T ss_pred             HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHhHHHH
Confidence            33468899999999999999999999999999999999999999998888888888888886554 44578888899999


Q ss_pred             cchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHH
Q 021634          103 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLA  157 (310)
Q Consensus       103 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~  157 (310)
                      |...++-.+..| + .....+..-+...+|+.+.|.+-+++.+..   +-...+.
T Consensus       343 PTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~---g~~~~~~  392 (422)
T COG0738         343 PTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMF---GIQLTFL  392 (422)
T ss_pred             HHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhh---hhHHHHH
Confidence            999999989888 3 333344444555678888888877777543   3444444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.99  E-value=0.00014  Score=63.77  Aligned_cols=125  Identities=11%  Similarity=0.026  Sum_probs=79.1

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHh
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG-----AAVNVYMLIFGRLLLG   95 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~r~l~G   95 (310)
                      .+++.+|.++.+.++.......+..+++.+.+.+.+|.++++.......+..++..+..     ..++++..++..++.+
T Consensus       244 ~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~  323 (413)
T PRK15403        244 ILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYA  323 (413)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            45556789999999998888888888888888876555444443322222233322221     1233434566778888


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI  146 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (310)
                      +|.+...+...... ..-....+|++.++.+.....+...++..++++...
T Consensus       324 ~G~~~~~p~~~~~a-l~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        324 FGIGLIFPTLFRFT-LFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHHHHhHHHHHHH-hccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            88877766666422 112233478888888887777777777777766543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.92  E-value=9.3e-05  Score=66.65  Aligned_cols=148  Identities=15%  Similarity=0.078  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhhCch-hHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHhhcccccccchhhh
Q 021634           32 LLTSFTSSLYVAGLVASFVASSVTRAFGRK-PSVLMGGAAFLAGSALGGA--AVNVYMLIFGRLLLGVGVGFANQSVPLY  108 (310)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr-~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~  108 (310)
                      ..++......++..+++.+.|.+..+++|- +.++++..+..+++-.++.  .+|....+..-++.|++.|.........
T Consensus       350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~  429 (599)
T PF06609_consen  350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVI  429 (599)
T ss_pred             eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHe
Confidence            467788888889999999999999988864 4445666665544333332  3455555677889999988887777777


Q ss_pred             hhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc------------------------------------------c
Q 021634          109 LSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ------------------------------------------I  146 (310)
Q Consensus       109 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~------------------------------------------~  146 (310)
                      ..-..|++.-+.+.++..+.-.+|+.++..+...+..                                          .
T Consensus       430 ~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~i  509 (599)
T PF06609_consen  430 AQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAI  509 (599)
T ss_pred             eEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhC
Confidence            7777888889999999888888877776655322110                                          0


Q ss_pred             CC-----------------CchhHHHHHhhHHHHHHHHHHhhcccCCchh
Q 021634          147 KG-----------------GWGWRVSLALAAVPASILTLGALFLPETPNS  179 (310)
Q Consensus       147 ~~-----------------~~~wr~~~~~~~~~~~~~~~~~~~~~es~~~  179 (310)
                      .+                 ..++|++|+....++.+..++.++++|..++
T Consensus       510 PGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~~  559 (599)
T PF06609_consen  510 PGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDKY  559 (599)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHh
Confidence            00                 0157899999999999999999998876443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.91  E-value=0.00028  Score=62.04  Aligned_cols=123  Identities=10%  Similarity=0.165  Sum_probs=108.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhH-HHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVAS-SVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGV   98 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~   98 (310)
                      -++...+++++++.+...+.......+++++.. .+...+|-|+++..|+..-.+...+.+++++.|+......+.++. 
T Consensus       266 ~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~-  344 (463)
T KOG2816|consen  266 LYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMFAAGVVVALA-  344 (463)
T ss_pred             EEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh-
Confidence            456778999999999999999999988888877 778888999999999999999999999999999999988888774 


Q ss_pred             cccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhh
Q 021634           99 GFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGT  143 (310)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  143 (310)
                      +...+...+.++-+.+++++|++.++......+..+++|.+-..+
T Consensus       345 ~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i  389 (463)
T KOG2816|consen  345 GIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI  389 (463)
T ss_pred             cchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence            567788889999999999999999999999999988888875433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.71  E-value=0.0001  Score=61.72  Aligned_cols=122  Identities=13%  Similarity=0.084  Sum_probs=109.6

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhC--chhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccc
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG--RKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G--rr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  101 (310)
                      +.+|.++.|+|-+.+...+++.+.+....+..||..  -+-.+..++.+..-..++.+.+++...+..+-.+-.+..+..
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~~~~l~~~s~l~sf~~A~~  369 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLARTPVVLYLGSTLKSFSTASV  369 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHh
Confidence            789999999999999999999999999999999988  777778888887777788888888888999989988888888


Q ss_pred             ccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 021634          102 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  145 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (310)
                      -+....++....|+++||..+|+......++..+||.+++.+..
T Consensus       370 vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  370 VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEE
Confidence            88889999999999999999999999999999999999865544

>PTZ00207 hypothetical protein; Provisional

Probab=97.64  E-value=0.00026  Score=64.11  Aligned_cols=153  Identities=10%  Similarity=-0.054  Sum_probs=100.4

Q ss_pred             cccccccc-ccch-hHHHH-HHHHHHHHHHHHHhhhHHHHh---hhC-----chhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 021634           19 DTKISNYC-KFDS-QLLTS-FTSSLYVAGLVASFVASSVTR---AFG-----RKPSVLMGGAAFLAGSALGGAAVNVYML   87 (310)
Q Consensus        19 ~~~i~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~g~l~d---r~G-----rr~~~~~~~~~~~~~~~~~~~~~~~~~l   87 (310)
                      .-+|.+.+ |.+. .+.+. +.++..++..+|-+..|.++.   |..     +|+..+....+..++.++.++.-.-..+
T Consensus       376 ~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p~~~L  455 (591)
T PTZ00207        376 ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLPKAAL  455 (591)
T ss_pred             HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCCccHh
Confidence            34455555 4422 22222 677778888888888887762   221     1223333333355556655555333688


Q ss_pred             HHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHH-HHHHhhhcccCC----------CchhHHHH
Q 021634           88 IFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAA-NFINYGTEQIKG----------GWGWRVSL  156 (310)
Q Consensus        88 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~----------~~~wr~~~  156 (310)
                      ++.-++.|++.|..+++....++|.|. ++-|+-..+......+|..+- ..+.+.+.+...          ..=+|..|
T Consensus       456 ~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~  534 (591)
T PTZ00207        456 PLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPL  534 (591)
T ss_pred             HHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHH
Confidence            999999999999999999999999999 888988888888888887765 444443332211          01267888


Q ss_pred             HhhHHHHHHHHHHhhc
Q 021634          157 ALAAVPASILTLGALF  172 (310)
Q Consensus       157 ~~~~~~~~~~~~~~~~  172 (310)
                      ++.+.+++...+....
T Consensus       535 ~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        535 AFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            8888887777666544

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.61  E-value=0.0024  Score=54.86  Aligned_cols=135  Identities=17%  Similarity=0.203  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhhcc
Q 021634           34 TSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMA  113 (310)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~  113 (310)
                      +.+.-+..+-..+..+++.+..+|...+.=...+.++..++.++.+++++.+.-+++-.+.+++.|........+ +..+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~l-t~~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSL-THFY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHH-HHhc
Confidence            334444455666667778888888875554566677888889999999999988888999999888877777775 4456


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccC
Q 021634          114 PARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPE  175 (310)
Q Consensus       114 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~e  175 (310)
                      ++    ...+.+..+.+.++++|+..-..+.. .+ .+-|..+.+..++.++..+.+++ +|+
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g-~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LG-LSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hC-cCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            53    24677777777777777776555554 22 34577777766666555555544 443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.48  E-value=0.00024  Score=63.03  Aligned_cols=132  Identities=11%  Similarity=0.015  Sum_probs=81.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhhHHHHhh----hCchhHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHhhccc
Q 021634           25 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA----FGRKPSVLMGGAAFLAGS-ALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr----~Grr~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      ..|.|..+.+.+.+.+.++.+++.++.|+++||    ..+|..+...+.+..+.. +......+.......-+....+..
T Consensus       303 ~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~  382 (495)
T KOG2533|consen  303 NGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLI  382 (495)
T ss_pred             CCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhH
Confidence            356899999999999999999999999999999    677777766666655544 333333323333333333333344


Q ss_pred             ccccchhhhhhhcccccch-hhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHh
Q 021634          100 FANQSVPLYLSEMAPARYR-GAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLAL  158 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~  158 (310)
                      ...+......++...++.| -...+....+.+.+..+++.+-  .....+.+.|...|..
T Consensus       383 ~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~--~~~~ap~y~~~~~f~~  440 (495)
T KOG2533|consen  383 ATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLF--RSLDAPRYGWGAVFYM  440 (495)
T ss_pred             HHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhc--ccccCcchhhhhHHHH
Confidence            4445555556666555444 4455556666666666555551  1222233567777744

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.45  E-value=0.0053  Score=54.70  Aligned_cols=134  Identities=13%  Similarity=0.087  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhCc--hh----H-HHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHhh
Q 021634           33 LTSFTSSLYVAGLVASFVASSVTRAFGR--KP----S-VLMGGAAFLAGSALGGAA---------VNVYMLIFGRLLLGV   96 (310)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~g~l~dr~Gr--r~----~-~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~   96 (310)
                      .+|..++..+...+.+|+.+++=.|.+|  |.    . +.+|+++.+++.+...++         .+.+.+++..++.++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            3455666666666667776666455522  21    1 456777777776554331         356778888999999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHH-HHHHHHHHHHHHhhhcccC---------CCchhHHHHHhhHHHHHHH
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFS-IGIGALAANFINYGTEQIK---------GGWGWRVSLALAAVPASIL  166 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~---------~~~~wr~~~~~~~~~~~~~  166 (310)
                      |+-+..|+..+.+++..|++.||..+|.+... ..+|..++..++.......         +...+...|...+...++.
T Consensus       390 gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        390 AELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999774 4688888777766553211         0113555666666555444

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.39  E-value=0.0011  Score=57.12  Aligned_cols=108  Identities=20%  Similarity=0.346  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhh---h------HHHHHHHHHHHhhcccccccchhhhhhhccccc---chhhhhhHHHHHH
Q 021634           62 PSVLMGGAAFLAGSALGGAAV---N------VYMLIFGRLLLGVGVGFANQSVPLYLSEMAPAR---YRGAINNGFQFSI  129 (310)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~---~------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~~~~  129 (310)
                      |+++++.++..+|.++..++.   .      ...++++-.+.++|.|..-+....+.+|.++++   +|.+...++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567888888888888744432   2      257888889999999999999999999999876   3456778899999


Q ss_pred             HHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634          130 GIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus       130 ~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      ++|..++..+..++.+   +.+|.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~~---~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQ---NYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHH---CS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhcc---ccchhhhhhHHHHHHHHHHHHHHh
Confidence            9999999888666663   467999999988887777665544

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.00061  Score=54.47  Aligned_cols=91  Identities=12%  Similarity=0.199  Sum_probs=70.3

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  101 (310)
                      +-++++..+.|++.+...-+-..++...+.|-++|+-|||+.-+.-++..+++++ .-.++.|-.++++|.+-|+..+..
T Consensus        63 LYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpqYkVLmVGR~LGGiaTsLL  141 (454)
T KOG4332|consen   63 LYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQYKVLMVGRVLGGIATSLL  141 (454)
T ss_pred             eehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCceEEEeehhhhhhHHHHHH
Confidence            4567788888888887777777788888999999999999986666665555554 335688889999999999988877


Q ss_pred             ccchhhh-hhhcc
Q 021634          102 NQSVPLY-LSEMA  113 (310)
Q Consensus       102 ~~~~~~~-~~~~~  113 (310)
                      +....+. ++|.-
T Consensus       142 FSaFEsWliaEHn  154 (454)
T KOG4332|consen  142 FSAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHHhh
Confidence            7666543 56655

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=97.33  E-value=0.0026  Score=57.58  Aligned_cols=148  Identities=16%  Similarity=0.129  Sum_probs=109.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh-CchhHHHHHHHHHHHHHHHhhhhhh---------------
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAVN---------------   83 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~~---------------   83 (310)
                      .++.++++.+...+....+.+.-......+++++++|-| ||-+++.++.++..++.++...+..               
T Consensus        62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~  141 (571)
T KOG1237|consen   62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGG  141 (571)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCC
Confidence            566777888887788888888888888899999999987 8999999999988888655443211               


Q ss_pred             ----------HHHHHHHHHHHhhcccccccchhhhhhhccc---ccch---hhhhhHHHHHHHHHHHHHHHHHhhhcccC
Q 021634           84 ----------VYMLIFGRLLLGVGVGFANQSVPLYLSEMAP---ARYR---GAINNGFQFSIGIGALAANFINYGTEQIK  147 (310)
Q Consensus        84 ----------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~---~~~r---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  147 (310)
                                ...+..+.-+..+|.|+.-+....+-+|-++   ++++   ..-+.++.....+|..++..+-.+..   
T Consensus       142 ~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq---  218 (571)
T KOG1237|consen  142 NVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ---  218 (571)
T ss_pred             CcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh---
Confidence                      1245566677778889999999999999998   3222   25667788888888888877744443   


Q ss_pred             CCchhHHHHHhhHHHHHHHHHHh
Q 021634          148 GGWGWRVSLALAAVPASILTLGA  170 (310)
Q Consensus       148 ~~~~wr~~~~~~~~~~~~~~~~~  170 (310)
                      ++.+|.+-|.+..+..++..++.
T Consensus       219 ~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  219 DNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             hcccceeeccHHHHHHHHHHHHH
Confidence            45679888877666655554443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.22  E-value=0.0016  Score=57.32  Aligned_cols=150  Identities=9%  Similarity=0.067  Sum_probs=105.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh----------hhhHHHHHHHHHHHhhc
Q 021634           28 FDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA----------AVNVYMLIFGRLLLGVG   97 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~r~l~G~~   97 (310)
                      .|+...+.+..+..++..++..+....--+..-|+++....++.++..+.-..          .++.+..+.--++..+.
T Consensus       252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~  331 (433)
T PF03092_consen  252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVI  331 (433)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHH
Confidence            88999999998888999999999988888888888888888777666553221          12222223334555555


Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCC----c-hhHHHHHhhHHHHHHHHHHhhc
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGG----W-GWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~-~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      .+..+-+...+.+|..|+..-|...++.....++|..++..++..+.+..+.    + +-.+..++..+..++.+....+
T Consensus       332 ~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~l  411 (433)
T PF03092_consen  332 GMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFL  411 (433)
T ss_pred             HHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence            5566667777899999999999999999999999988888887776654331    1 2234445555555555555556


Q ss_pred             ccCCc
Q 021634          173 LPETP  177 (310)
Q Consensus       173 ~~es~  177 (310)
                      +|+..
T Consensus       412 Lp~~~  416 (433)
T PF03092_consen  412 LPPQK  416 (433)
T ss_pred             cCCCc
Confidence            77653

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=96.92  E-value=0.25  Score=43.41  Aligned_cols=119  Identities=8%  Similarity=-0.009  Sum_probs=82.3

Q ss_pred             cchhHHHHHHHHHHH-HHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh---------hh--------------
Q 021634           28 FDSQLLTSFTSSLYV-AGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA---------VN--------------   83 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~-~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~---------~~--------------   83 (310)
                      .+++.+..+-+..-+ +..+..++.+.+.++..|.+++-.....+....+++++.         ++              
T Consensus        58 ~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~  137 (509)
T COG3202          58 QGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMF  137 (509)
T ss_pred             CcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCcc
Confidence            346667888888877 667888999999999999999877766666666665542         11              


Q ss_pred             ---------HHHHHHHHHHHhhccccccc-chhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhccc
Q 021634           84 ---------VYMLIFGRLLLGVGVGFANQ-SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQI  146 (310)
Q Consensus        84 ---------~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~  146 (310)
                               .|...+..+..=+-.+...+ .-.....|.+..+|-.|..++++.+.+++..+++.+..++...
T Consensus       138 l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~  210 (509)
T COG3202         138 LKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH  210 (509)
T ss_pred             ceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                     12222222222221222222 3456678999989999999999999999999988887777653

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.69  E-value=0.076  Score=46.81  Aligned_cols=52  Identities=10%  Similarity=0.194  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHH
Q 021634           83 NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFI  139 (310)
Q Consensus        83 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  139 (310)
                      .++..++.-++.|++.+..+.....+.+ .+|++.    +..+..+.+++++++..+
T Consensus       105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~-~fp~~~----~~a~~~G~g~aGv~~s~~  156 (437)
T TIGR00939       105 FFVTTMASVVIINSGMALLQGSLFGLAG-VFPSTY----SSAVMSGQGLAGVLTSLA  156 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhcc-cCCHHH----HHHHHhcchhHHHHHHHH
Confidence            5667777788889988888888888655 566553    444455555555554444

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.067  Score=47.03  Aligned_cols=105  Identities=22%  Similarity=0.323  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHh---hhCchhHHHHHHHHHHHHHHHhhhh------------------hhHHHHHHHHH
Q 021634           34 TSFTSSLYVAGLVASFVASSVTR---AFGRKPSVLMGGAAFLAGSALGGAA------------------VNVYMLIFGRL   92 (310)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~g~l~d---r~Grr~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~r~   92 (310)
                      +.-.-...++..+++.+.+.+.+   ++||++.+.++..+-.++.++....                  +++...++.-+
T Consensus       282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~  361 (461)
T KOG3098|consen  282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF  361 (461)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence            33334444555666677777765   5799999999988888887765542                  24567777889


Q ss_pred             HHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHH
Q 021634           93 LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFI  139 (310)
Q Consensus        93 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  139 (310)
                      +.|++-++.......++.+.+ +++|..+.++...-..++..++...
T Consensus       362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999 6778888888777777776654444

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=96.57  E-value=0.036  Score=48.66  Aligned_cols=43  Identities=9%  Similarity=-0.017  Sum_probs=28.4

Q ss_pred             ccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHH
Q 021634           98 VGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFIN  140 (310)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  140 (310)
                      ++.--.++-...-.+..+++++.+...-..+.+.|..++..+-
T Consensus       132 ~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvF  174 (544)
T PF13000_consen  132 CATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVF  174 (544)
T ss_pred             HccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHH
Confidence            3333344444555566788888888888888888877766553

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=96.51  E-value=0.057  Score=45.80  Aligned_cols=118  Identities=14%  Similarity=0.059  Sum_probs=67.0

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHh-----hhCchhHHHH-HHHHHHHHHHHhhh-----------hh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTR-----AFGRKPSVLM-GGAAFLAGSALGGA-----------AV   82 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d-----r~Grr~~~~~-~~~~~~~~~~~~~~-----------~~   82 (310)
                      |.+-+.-|.|-++.+....++.=  .---++|.++.|     |+||||.-++ +..+.+..+...+.           .+
T Consensus        54 P~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p  131 (510)
T KOG3574|consen   54 PLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLP  131 (510)
T ss_pred             HHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCc
Confidence            44444556666665544433221  223578999999     9999986543 22222222222221           13


Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHH
Q 021634           83 NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFI  139 (310)
Q Consensus        83 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  139 (310)
                      +...+...-++.-+.++..-...-...-.+..+++-|-+...-..+...|.+++..+
T Consensus       132 ~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  132 NVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             chHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence            333333344555555555555555666667778888888877777777777776555

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.48  E-value=0.013  Score=50.52  Aligned_cols=149  Identities=12%  Similarity=0.013  Sum_probs=87.7

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhC-chhHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHhhccccc
Q 021634           27 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFG-RKPSVLMGGAAFLAGSALGGAA----VNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G-rr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~~~  101 (310)
                      |.+....|+...+..++.++++.+.|.++||.. -|.+.++......++.......    ...+.+...-.+.|.+....
T Consensus       297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~  376 (480)
T KOG2563|consen  297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGY  376 (480)
T ss_pred             cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCC
Confidence            445577899999999999999999999999986 4666666666666663322221    23344556667788888888


Q ss_pred             ccchhhhhhhcccccchhhhhhHHHH-HHHHHHHHHHHHHhhhcccCCCchhHHHH-HhhHHHHHHHHHHhhcccCC
Q 021634          102 NQSVPLYLSEMAPARYRGAINNGFQF-SIGIGALAANFINYGTEQIKGGWGWRVSL-ALAAVPASILTLGALFLPET  176 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~wr~~~-~~~~~~~~~~~~~~~~~~es  176 (310)
                      .|+...+-.|..-|..-+...|+... +...|..+.-..+........ .+|.... +......++...+..+++|+
T Consensus       377 ~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~l~~~lva~~r~~  452 (480)
T KOG2563|consen  377 LPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGP-PGNTFPANIFLTVSALLGAILVAFFRPD  452 (480)
T ss_pred             CCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCC-CCCCccchhHhHHHHHHHHHHHhhhhhh
Confidence            89888888887544433444555443 333343333333333332221 1343332 33333334444444555544

>PRK03612 spermidine synthase; Provisional

Probab=96.46  E-value=0.11  Score=46.89  Aligned_cols=118  Identities=13%  Similarity=-0.008  Sum_probs=67.2

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHH---HHHh----hhhhhH-HHHHHHHHHHhh
Q 021634           25 YCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAG---SALG----GAAVNV-YMLIFGRLLLGV   96 (310)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~---~~~~----~~~~~~-~~l~~~r~l~G~   96 (310)
                      -+|-+....+.+.+++..|.++|+.+.+++.++--|+.. ..-..+..++   ..+.    .+.... ..+...-++.++
T Consensus        44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~  122 (521)
T PRK03612         44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGL  122 (521)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678888999999999999999999988744333322 1111111111   1111    111111 122333456677


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  144 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  144 (310)
                      ..|+..|....+..+... ++-++..|-......+|.++|.++.+++.
T Consensus       123 l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vL  169 (521)
T PRK03612        123 LIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLL  169 (521)
T ss_pred             HHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHH
Confidence            777777776665554332 22345566677777777777777755443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.45  E-value=0.075  Score=46.55  Aligned_cols=125  Identities=18%  Similarity=0.174  Sum_probs=91.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh------hh----hHHHHHHHHHHHhh
Q 021634           27 KFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA------AV----NVYMLIFGRLLLGV   96 (310)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~------~~----~~~~l~~~r~l~G~   96 (310)
                      |+++..++..-+...+....+.+...++.+|+|..+.=+.+.....++..++..      .+    +...++.+-.+.-+
T Consensus       289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~  368 (432)
T PF06963_consen  289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI  368 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999888777776655544433322      12    33344444455555


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchh
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGW  152 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w  152 (310)
                      |.=+.--....++.|..|+++||...+.-....++-.++...++.... .+++++|
T Consensus       369 GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~-~P~~F~~  423 (432)
T PF06963_consen  369 GLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP-RPSQFGW  423 (432)
T ss_pred             HHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC-ChHhcCh
Confidence            655566677788999999999999999988888888777766654333 3334444

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.39  E-value=0.051  Score=47.70  Aligned_cols=142  Identities=15%  Similarity=0.096  Sum_probs=94.0

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCch---h----HHHHHHHHHHHHHHHhhhh----------hhHHHHH
Q 021634           26 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRK---P----SVLMGGAAFLAGSALGGAA----------VNVYMLI   88 (310)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr---~----~~~~~~~~~~~~~~~~~~~----------~~~~~l~   88 (310)
                      ++++++   +..+...+.-++.+++..++-.+.++|   +    -+-+++.+.+.+.++....          .+.+.++
T Consensus       322 ~~vp~~---~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~li  398 (498)
T COG3104         322 FEVPPA---WFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLV  398 (498)
T ss_pred             eecCHH---HHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHH
Confidence            344444   455666666667777777776664443   1    2334555555554433322          3578888


Q ss_pred             HHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc---cCCCchhHHHHHhhHHHHHH
Q 021634           89 FGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ---IKGGWGWRVSLALAAVPASI  165 (310)
Q Consensus        89 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~wr~~~~~~~~~~~~  165 (310)
                      ...+++++|+=+..++..++++...|++-.+.+++++......|..++..++.....   ......-...|+..+...++
T Consensus       399 l~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~  478 (498)
T COG3104         399 LSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIV  478 (498)
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988888888777663221   11112344556666666655


Q ss_pred             HHHHh
Q 021634          166 LTLGA  170 (310)
Q Consensus       166 ~~~~~  170 (310)
                      ..+..
T Consensus       479 ~~~~~  483 (498)
T COG3104         479 IGILL  483 (498)
T ss_pred             HHHHH
Confidence            54443

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.29  E-value=0.0076  Score=53.12  Aligned_cols=62  Identities=10%  Similarity=0.137  Sum_probs=49.2

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHH-HHHHHHHHhhhh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGA-AFLAGSALGGAA   81 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~-~~~~~~~~~~~~   81 (310)
                      +...+.+|+++.+.+.+++.--+..+++.|++|+++|||-+||.++++.+ ....++++..+.
T Consensus        35 ~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll~fv   97 (618)
T KOG3762|consen   35 AVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLLVFV   97 (618)
T ss_pred             HHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHheeec
Confidence            34567889999999999999999999999999999999986666555544 455555655554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.17  E-value=0.073  Score=45.95  Aligned_cols=116  Identities=9%  Similarity=0.017  Sum_probs=83.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHH-----HHHhhhhhhHHHHHHHHHHHhhcccc
Q 021634           26 CKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAG-----SALGGAAVNVYMLIFGRLLLGVGVGF  100 (310)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~r~l~G~~~~~  100 (310)
                      +.-.+++..+....+.+|-.++.--...+  |+  |++.+...+...-.     ....-+.++.|..++.-+..|+..|.
T Consensus       276 ~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa  351 (402)
T PF02487_consen  276 FFSPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA  351 (402)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence            33346777888888888776664332221  33  33333333322222     22233457889888889999999999


Q ss_pred             cccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcc
Q 021634          101 ANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQ  145 (310)
Q Consensus       101 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  145 (310)
                      .+.-....+.|-.|+++|..+++....+.++|.+++..++..+..
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~  396 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP  396 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            999999889999999999999999999999999999999876653

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00806 rfc RFC reduced folate carrier

Probab=95.86  E-value=0.031  Score=49.20  Aligned_cols=71  Identities=10%  Similarity=0.084  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHhHHHHHHHcCCCchh-HHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          235 QLLMAMAIPFFQQVTGINVIAFYAPLLFRTIGLGRLK-VCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      ..++++...++..  .-.......|++.++.|++.++ .+.+......+-.+..+++++  +.||+|.|+++..+.
T Consensus        28 ~~~~lC~fGF~~e--~R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~Gl--LaDrlG~K~vL~l~~   99 (511)
T TIGR00806        28 LVLYLCFYGFMAQ--FRPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFL--LTDYLRYKPVLVLQA   99 (511)
T ss_pred             HHHHHHHHHHHHH--hhchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHH--HHHHhCchHHHHHHH
Confidence            3343333444433  3345566677777889999999 999999999999999999999  999999999988654

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=95.70  E-value=0.028  Score=36.71  Aligned_cols=56  Identities=18%  Similarity=-0.053  Sum_probs=47.1

Q ss_pred             HHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          251 INVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       251 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      -..+...+|...++.++|..+++++.+...++-.+|.+...+  +.++.++++.+..+
T Consensus         8 RFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~--~~~~~~~~~~~~~~   63 (85)
T PF06779_consen    8 RFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASR--LPRHSRPRRLLRAG   63 (85)
T ss_pred             HHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHhcccHHHHHHHH
Confidence            345677899999999999999999999999999999999998  77776666666554

Note that many members are hypothetical proteins.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.53  E-value=0.013  Score=54.37  Aligned_cols=68  Identities=7%  Similarity=-0.067  Sum_probs=54.6

Q ss_pred             HHHHHHHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          240 MAIPFFQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      ..+..+.+..........++.+-++++++..+.+++.+...++..++.++.++  +.||.+||+++.+|+
T Consensus        38 ~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~--~~~r~~r~~~i~~g~  105 (633)
T TIGR00805        38 LTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSY--FGTKLHRPIVIGIGC  105 (633)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHH--hhcccCcceEEEecH
Confidence            33344555444455666677777888999999999999999999999999999  999999999887764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.18  E-value=0.12  Score=43.66  Aligned_cols=46  Identities=13%  Similarity=-0.026  Sum_probs=39.5

Q ss_pred             HHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhh
Q 021634          260 LLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIY  307 (310)
Q Consensus       260 ~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~  307 (310)
                      ..+++.|++..+.+.++....+...+...+.|.  +.||+|||+..+.
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~--laD~~Grk~~cl~  104 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGS--LADRYGRKKACLL  104 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCchHHHHH
Confidence            444788999999999999998888888888888  8999999987654

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=94.72  E-value=0.087  Score=42.50  Aligned_cols=61  Identities=15%  Similarity=0.069  Sum_probs=51.3

Q ss_pred             HHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          246 QQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      ......+.+..|.|.+-++.|+++++...+.....++..+| +..|.  +.|++|.+.++.+|.
T Consensus        13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~--l~d~~gp~~~l~iG~   73 (250)
T PF06813_consen   13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGL--LYDRFGPWVVLLIGA   73 (250)
T ss_pred             HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHH--HHHhcchHHHHHHHH
Confidence            33445677899999999999999999999999999998876 67788  899999999887653

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.63  E-value=1  Score=38.95  Aligned_cols=35  Identities=14%  Similarity=0.122  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHHhhcccccccchhhhhhhcccccch
Q 021634           83 NVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYR  118 (310)
Q Consensus        83 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r  118 (310)
                      .+...++.-.+.+.+.+..+.......++ +|+|.-
T Consensus       116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~yt  150 (406)
T KOG1479|consen  116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYT  150 (406)
T ss_pred             hHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHH
Confidence            45566667777888888877777775555 555544

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.15  E-value=0.026  Score=47.37  Aligned_cols=43  Identities=16%  Similarity=0.300  Sum_probs=0.0

Q ss_pred             HHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHH
Q 021634           92 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFI  139 (310)
Q Consensus        92 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  139 (310)
                      ++.|.+.+..+.....+.+. +|++.    +..+..+.++++++..++
T Consensus         5 ~~~~~~~~~~q~s~~glas~-~p~~y----~~a~~~Gq~~aGv~~s~l   47 (309)
T PF01733_consen    5 ALIGFANAVLQSSLFGLASL-FPPKY----TQAVMIGQGLAGVIVSLL   47 (309)
T ss_dssp             ------------------------------------------------
T ss_pred             EEEHhhhHHHhccHHHHHhc-CCHHH----HHHHHhhccHHHHHHHHH
Confidence            45666677777777776554 66544    344445555555554444

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=92.02  E-value=0.39  Score=42.02  Aligned_cols=56  Identities=9%  Similarity=-0.089  Sum_probs=45.2

Q ss_pred             HHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhcc
Q 021634          252 NVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL  309 (310)
Q Consensus       252 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~~  309 (310)
                      +.+-...+..-+..+.++...+++.....+...++.++.|+  +.||+.|++++.+|.
T Consensus        50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gy--LadryNR~~v~~vG~  105 (493)
T KOG1330|consen   50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGY--LADRYNRKRVIAVGI  105 (493)
T ss_pred             hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHH--HHhhcCcceEEeeHH
Confidence            33333344433445899999999999999999999999999  999999999988764

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=90.31  E-value=1.1  Score=37.22  Aligned_cols=77  Identities=13%  Similarity=0.057  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021634           68 GAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  144 (310)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  144 (310)
                      .+++.+...+..+.++++..++.-+.-|+-.|..+.-..--+.+-.++++|-.+++....+.+.|..++..++..+.
T Consensus       326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            33444445566678999999999999999888888777766777788899999999999999999999988865443

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=89.90  E-value=9  Score=30.82  Aligned_cols=27  Identities=4%  Similarity=0.087  Sum_probs=16.7

Q ss_pred             HhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          280 ECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       280 ~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .+|..++.+-+-+  ++.|+..|++.+.|
T Consensus       250 ~lCT~lAVigGk~--lAskIS~rtVt~~g  276 (294)
T KOG2881|consen  250 ALCTGLAVIGGKY--LASKISVRTVTLIG  276 (294)
T ss_pred             HHHHHHHHhhhHH--HhhhheeEEEEEec
Confidence            3344444444445  78888888776654

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=88.90  E-value=0.35  Score=38.90  Aligned_cols=57  Identities=12%  Similarity=0.127  Sum_probs=35.8

Q ss_pred             cchhhhhhHHHHHHHHHHHHHHHHHhhhc-c--cCCCchhHHHHHhhHHHHHHHHHHhhcc
Q 021634          116 RYRGAINNGFQFSIGIGALAANFINYGTE-Q--IKGGWGWRVSLALAAVPASILTLGALFL  173 (310)
Q Consensus       116 ~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~~~~~wr~~~~~~~~~~~~~~~~~~~~  173 (310)
                      ++|+..+.....+.++|.++....- ... +  ......|++++.+.+++.++-++++.++
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF-~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if   61 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPF-LISSSVVIALTNNWQWILSIFILLIFIPLILYIIF   61 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhH-HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677777777788888877654331 122 1  1112369999988887777666665544

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=86.83  E-value=11  Score=30.53  Aligned_cols=103  Identities=14%  Similarity=0.109  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhh-hCchhHHH----HHHHHHHHHHHHhhh-h----hhHHHHHHHHHHHhhcccccc
Q 021634           33 LTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVL----MGGAAFLAGSALGGA-A----VNVYMLIFGRLLLGVGVGFAN  102 (310)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~----~~~~~~~~~~~~~~~-~----~~~~~l~~~r~l~G~~~~~~~  102 (310)
                      .....-++..+..+|....|+.... +-||+.+.    .++++..+..+.... .    .+...+++.-++.|.+.=+.+
T Consensus       143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ  222 (267)
T PF07672_consen  143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ  222 (267)
T ss_pred             hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence            3555666677777888888888764 45666544    334444444443211 1    246677888889998865555


Q ss_pred             cchhhhhhhcccccchhhhhhHHHHHHHHHHHHH
Q 021634          103 QSVPLYLSEMAPARYRGAINNGFQFSIGIGALAA  136 (310)
Q Consensus       103 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~  136 (310)
                      ++...+-.|. +..++-+.--.++..+++|.++-
T Consensus       223 ~ViL~lPhEy-K~~~pk~ig~~Fg~iWGfGY~~y  255 (267)
T PF07672_consen  223 GVILNLPHEY-KGYNPKKIGIQFGLIWGFGYIFY  255 (267)
T ss_pred             HHHhcChhhh-cCCCcceehhHHHHHHHHHHHHH
Confidence            5555444443 22223333344555666665543

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=86.72  E-value=18  Score=30.60  Aligned_cols=74  Identities=22%  Similarity=0.243  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhhccc
Q 021634           40 LYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAP  114 (310)
Q Consensus        40 ~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~  114 (310)
                      ..+..+.++++.+.+..++|-|.++.++.......-. .-+-+.+..++-.-...|++.++.+..-.+|+++.-.
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA-~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~  140 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA-ANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ  140 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence            3445566777777899999999999887776544322 2234677888899999999999998888888776643

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.59  E-value=5.3  Score=27.19  Aligned_cols=42  Identities=19%  Similarity=0.134  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhh-CchhHHHHHHHHHHHH
Q 021634           33 LTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAG   74 (310)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~   74 (310)
                      ...-.+.-+++..+.....||+.||| |-++..++..++...+
T Consensus        44 ~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~   86 (116)
T COG5336          44 QAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG   86 (116)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence            34445666777777788889999998 6777666555544443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=85.64  E-value=16  Score=30.06  Aligned_cols=132  Identities=15%  Similarity=0.047  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhhhCch--hHHHHHHHHHHHHHHHhhh----hh---hHHHHHHHHHHHhhccccccc
Q 021634           33 LTSFTSSLYVAGLVASFVASSVTRAFGRK--PSVLMGGAAFLAGSALGGA----AV---NVYMLIFGRLLLGVGVGFANQ  103 (310)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~g~l~dr~Grr--~~~~~~~~~~~~~~~~~~~----~~---~~~~l~~~r~l~G~~~~~~~~  103 (310)
                      -|.+.+.++++.++|+-+..++..|-..|  +.+.+.....++...+...    ++   +...-+++-++.-.++|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            47788899999999999998888776554  3444444433333322221    11   222224444555567788999


Q ss_pred             chhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCC--CchhHHHHHhhHHHHHHHHHH
Q 021634          104 SVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKG--GWGWRVSLALAAVPASILTLG  169 (310)
Q Consensus       104 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~wr~~~~~~~~~~~~~~~~  169 (310)
                      ....+-+.+.|.+.|+..+.++-.-..+-..++  +   .....+  ..+-|..|-++.+...+..+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClv--L---ynlh~~~~p~~tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLV--L---YNLHVDAFPTTTRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhh--h---eecccccCccccchhhhhhHHHHHHHHHH
Confidence            999999999999999887777654433322221  1   111111  124566777766666555433

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=85.56  E-value=2.5  Score=37.13  Aligned_cols=80  Identities=18%  Similarity=0.092  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhh
Q 021634           32 LLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSE  111 (310)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~  111 (310)
                      .-.|=..++.+...+.+.....+.||+|-|+.+..+...+.++..+.+...+.+....-+-..|+-.+....+-...+++
T Consensus       333 ~G~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~  412 (498)
T KOG0637|consen  333 MGCLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALAL  412 (498)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHH
Confidence            33555667778888999999999999997777777777788888888888888888888888886555555554444443

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=84.13  E-value=7.6  Score=34.45  Aligned_cols=63  Identities=11%  Similarity=0.064  Sum_probs=51.7

Q ss_pred             hhHHHHHHHHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc
Q 021634           82 VNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE  144 (310)
Q Consensus        82 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  144 (310)
                      ++-+..++..++.|+..|-..+....+..+..++++|..+..+...+..+|..+|..++..+.
T Consensus       370 ~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~  432 (437)
T TIGR00939       370 PGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV  432 (437)
T ss_pred             cccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355666677899999888888888888888899999999999999999999888888765443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=82.91  E-value=7.7  Score=33.92  Aligned_cols=96  Identities=10%  Similarity=0.022  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHH--HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhh
Q 021634           32 LLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVL--MGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYL  109 (310)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~  109 (310)
                      --|.+-.+..+..+++++..|++..++.+-.-+.  ...++.+...++++..++.|...++-++.+.......+....-+
T Consensus       286 YNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qI  365 (412)
T PF01770_consen  286 YNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQI  365 (412)
T ss_pred             cchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3477788888888999999999977777654444  34444455556677888999988888887776666666666666


Q ss_pred             hhcccccchhhhhhHHHH
Q 021634          110 SEMAPARYRGAINNGFQF  127 (310)
Q Consensus       110 ~~~~~~~~r~~~~~~~~~  127 (310)
                      +.....+.-+..+|+...
T Consensus       366 A~~l~~e~yaLVFGiNtf  383 (412)
T PF01770_consen  366 AKNLSEERYALVFGINTF  383 (412)
T ss_pred             HHhccccceeeeeeeHHH
Confidence            666655555665555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=81.12  E-value=4.6  Score=33.73  Aligned_cols=133  Identities=11%  Similarity=0.051  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhhhhhcc
Q 021634           34 TSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMA  113 (310)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~  113 (310)
                      +.+.-.-.+-..+..+.+....||+---.=..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-..+ +..+
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~l-ss~Y  143 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLAL-SSRY  143 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhh-hccC
Confidence            333344444555666666777787643322344556677777888899999998888888888877766655553 3334


Q ss_pred             cccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634          114 PARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus       114 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      ++..    .+.++.+.+..+++|..--.++.+.. +..-|...++...+-++....+++
T Consensus       144 ~~~~----i~~WSSGTGgAGliGa~SYa~lT~~~-~~spk~Tlli~l~lP~lfa~~yf~  197 (409)
T KOG3880|consen  144 PSIV----IAGWSSGTGGAGLIGASSYAFLTSWA-NLSPKSTLLIMLFLPALFAFAYFF  197 (409)
T ss_pred             CCce----eccccCCCCcchhhhhhHHHHHhhhc-CCChhhHHHHHHHHHHHHHHHHHh
Confidence            3332    23333333333444433322344322 234566666644444444444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	310
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		8e-13

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 26/180 (14%)
Query: 100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINY-----GTEQIKGGWGWRV 154
            A+   P+Y++E+APA  RG + +  QF+I  G L    +NY     G        GWR 
Sbjct: 142 LASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRY 201
Query: 155 SLALAAVPASILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKAS 214
             A   +PA +  +    +PE+P  L+ R    Q A+ +L+++ G             A+
Sbjct: 202 MFASECIPALLFLMLLYTVPESPRWLMSRGKQEQ-AEGILRKIMGNT----------LAT 250
Query: 215 STAKTINHPFKKIIQRKYRPQLLM--------AMAIPFFQQVTGINVIAFYAPLLFRTIG 266
              + I H       RK   +LLM         + +  FQQ  GINV+ +YAP +F+T+G
Sbjct: 251 QAVQEIKHSLDH--GRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG 308
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	1e-04
2cfq_A	417	Lactose permease; transport, transport mechanism,	3e-04
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	8e-04

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 32/152 (21%), Positives = 57/152 (37%), Gaps = 25/152 (16%)

Query: 37  TSSLYVAGL-VASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLG 95
               Y+    V+      ++   GR+P +L+G + F+  + +     ++ +LI    + G
Sbjct: 40  VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQG 99

Query: 96  VGVGFAN---QSVP--LYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGW 150
           +G G      +++P  LY            +N G      +  L A  I        GG 
Sbjct: 100 MGTGVGGVMARTLPRDLYERTQL-RHANSLLNMGI----LVSPLLAPLI--------GGL 146

Query: 151 -----GWRVS-LALAAVPASILTLGALFLPET 176
                 WR   L L  + A +    A ++PET
Sbjct: 147 LDTMWNWRACYLFLLVLCAGVTFSMARWMPET 178

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 21/143 (14%), Positives = 46/143 (32%), Gaps = 4/143 (2%)

Query: 49  FVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLY 108
           F A  +    G K ++L+ G            A +   ++  + L    V F       Y
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336

Query: 109 LSEMAPARYRG-AINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT 167
           ++     R+        F F   +  +  + +      +    G++ +  +  + A   T
Sbjct: 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL---AGNMYESIGFQGAYLVLGLVALGFT 393

Query: 168 LGALFLPETPNSLIQRKSDHQKA 190
           L ++F    P  L   +    + 
Sbjct: 394 LISVFTLSGPGPLSLLRRQVNEV 416

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 3/107 (2%)

Query: 36  FTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSAL---GGAAVNVYMLIFGRL 92
             S+ Y    +    A  + +    K  ++ G   +  G+AL       +N  + + G  
Sbjct: 66  IQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLF 125

Query: 93  LLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFI 139
           ++  G+G    +   +++ + P        N  Q     GA+ A   
Sbjct: 126 IIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVF 172

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 52/354 (14%), Positives = 96/354 (27%), Gaps = 128/354 (36%)

Query: 6   EKFFPEVHRKMKED-----TKISNYCKFDSQLLTSFTSS---LYVAGLVASFVASSVTRA 57
           +KF  EV R    +     + I    +  S +   +      LY       F   +V+R 
Sbjct: 80  QKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY--NDNQVFAKYNVSRL 134

Query: 58  FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARY 117
             +    L          AL        +LI G  +LG G     ++    ++      Y
Sbjct: 135 --QPYLKLR--------QALLELRPAKNVLIDG--VLGSG-----KTW---VALDVCLSY 174

Query: 118 RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILT-LGALF---- 172
           +  +     F I        F             W ++L     P ++L  L  L     
Sbjct: 175 K--VQCKMDFKI--------F-------------W-LNLKNCNSPETVLEMLQKLLYQID 210

Query: 173 ------------LPETPNSLIQRKS------DHQKAKLMLQRVRGTNDVEAEFD------ 208
                       +    +S+            ++   L+L  V+      A F+      
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKIL 269

Query: 209 ---------DLLKASSTAK-TINHPFKKIIQRKYRPQLLMAMAIPFFQ---QVTGINVIA 255
                    D L A++T   +++H    +   + +  LL  +         +V   N   
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--- 326

Query: 256 FYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYTL 309
              P     I    ++                G   W        W+ ++   L
Sbjct: 327 ---PRRLSIIAE-SIRD---------------GLATW------DNWKHVNCDKL 355

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 8/134 (5%)

Query: 30  SQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIF 89
           + ++  + S +Y++G +  FVA    R  G +P+V  GG   + G  +         L  
Sbjct: 57  ASIMAIYASMVYLSGTIGGFVAD---RIIGARPAVFWGGVLIMLGHIVLALPFGASALFG 113

Query: 90  GRLLLGVGVGFANQSVPLYLSEMAPA--RYRGAINNGFQFSIGIGALAANFINYGTEQIK 147
             +L+ +G GF   +V   +  +     R R A  + F F I +GA  A  I       +
Sbjct: 114 SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI---VGAAQ 170

Query: 148 GGWGWRVSLALAAV 161
              G+ V+ +LAA+
Sbjct: 171 EAAGYHVAFSLAAI 184

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.96
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.95
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.92
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.84
2xut_A	524	Proton/peptide symporter family protein; transport	99.83
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.47
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.4
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.38
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.29
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.24
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.74
2xut_A	524	Proton/peptide symporter family protein; transport	98.66

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=5.5e-33  Score=246.04  Aligned_cols=274  Identities=22%  Similarity=0.334  Sum_probs=222.4

Q ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhh------------------hhhhHHHHHH
Q 021634           28 FDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGG------------------AAVNVYMLIF   89 (310)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~   89 (310)
                      .+..+.+++.+++.+|.++|++++|+++||+|||++++++.+++.+++++++                  ++++++.+++
T Consensus        52 ~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~  131 (491)
T 4gc0_A           52 AANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVI  131 (491)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHH
Confidence            3556789999999999999999999999999999999999999999999988                  4789999999


Q ss_pred             HHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC-----CCchhHHHHHhhHHHHH
Q 021634           90 GRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK-----GGWGWRVSLALAAVPAS  164 (310)
Q Consensus        90 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~~wr~~~~~~~~~~~  164 (310)
                      +|+++|++.|...+....+++|+.|+++|++..++.+.+..+|.++++.++.......     ....||+.+.+..++.+
T Consensus       132 ~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (491)
T 4gc0_A          132 YRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPAL  211 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhh
Confidence            9999999999999999999999999999999999999999999999988887665432     23579999999999988


Q ss_pred             HHHHHhhcccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHH
Q 021634          165 ILTLGALFLPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPF  244 (310)
Q Consensus       165 ~~~~~~~~~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (310)
                      +..+..+++||+|+|+..+++ .+++++.+++...+++.+++..+.++...++++... ...   ....++.........
T Consensus       212 ~~~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~  286 (491)
T 4gc0_A          212 LFLMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGG-RLL---MFGVGVIVIGVMLSI  286 (491)
T ss_dssp             HHHHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHH---HSCCTHHHHHHHHHH
T ss_pred             hhhhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhh-HHH---HhcccHHHHHHHHHH
Confidence            888888999999999999888 777777777665544333333222222221111111 111   122344555566667


Q ss_pred             HHHhhhHHHHHHhHHHHHHHcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          245 FQQVTGINVIAFYAPLLFRTIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      +.+..+.+.+..|.|.+.+..+.+.........+.++...++.+++++  +.||+|||+.++.+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~dr~Grr~~~~~~  348 (491)
T 4gc0_A          287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIM--TVDKFGRKPLQIIG  348 (491)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCSHHHHHHH
T ss_pred             HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHH--HHHhhcCcchhccc
Confidence            777888889999999999999888888888888889999999999999  99999999987754

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.97  E-value=1.1e-29  Score=221.56  Aligned_cols=252  Identities=12%  Similarity=0.105  Sum_probs=201.0

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHh---hhhhhHHHHHHHHHHHhh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALG---GAAVNVYMLIFGRLLLGV   96 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~   96 (310)
                      |.+++++|+++.+.+++.+.+.++..++++++|+++||+|||++++.+.++..++.+++   +++++++.++++|++.|+
T Consensus        50 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~  129 (438)
T 3o7q_A           50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAA  129 (438)
T ss_dssp             HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHh
Confidence            66889999999999999999999999999999999999999999999999999999998   888999999999999999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhc-ccCCC----------------------chhH
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTE-QIKGG----------------------WGWR  153 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~----------------------~~wr  153 (310)
                      +.+...+....++.|++|+++|++++++.+.+..+|..+++.++..+. ...+.                      .+||
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~  209 (438)
T 3o7q_A          130 GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQ  209 (438)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             hHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHH
Confidence            999999999999999999999999999999999999999999988776 43321                      0199


Q ss_pred             HHHHhhHHHHHHHHHHhhc--ccCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhcccc
Q 021634          154 VSLALAAVPASILTLGALF--LPETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRK  231 (310)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~--~~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (310)
                      +.|++.+++.++..+..++  .||+++...++++                               +++.+.++++.++++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~  258 (438)
T 3o7q_A          210 TPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-------------------------------QGSFSASLSRLARIR  258 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-------------------------------TTSHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCccccccccccc-------------------------------ccchhhhHHHHHhCh
Confidence            9998877766665554443  4555431100000                               001112334444443


Q ss_pred             chhHHHHHHHHHHHHHhhhHHHHHHhHHHH-HHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          232 YRPQLLMAMAIPFFQQVTGINVIAFYAPLL-FRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .    ++...+..+...........+.|.| +++. |+++.+++.......++..++.++.++  +.||++||+.+..+
T Consensus       259 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~r~~~~~~~~~~  331 (438)
T 3o7q_A          259 H----WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTW--LISRFAPHKVLAAY  331 (438)
T ss_dssp             H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHSCHHHHHHHH
T ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHH--HHHHhcchHHHHHH
Confidence            3    2333333344444556777889999 8776 999999999999999999999999999  99999999987754

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.96  E-value=1.2e-29  Score=222.12  Aligned_cols=265  Identities=17%  Similarity=0.099  Sum_probs=205.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGA----AVNVYMLIFGRLLLG   95 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G   95 (310)
                      +.+.+++ .++.+.+++.+++.++..++++++|+++||+|||+++.++.++..++.+++++    +++++.++++|++.|
T Consensus        52 ~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G  130 (451)
T 1pw4_A           52 PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG  130 (451)
T ss_dssp             HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHH
T ss_pred             HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence            6778889 99999999999999999999999999999999999999999999999999999    999999999999999


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCch-hHHHHHhhHHHHHHHHHHh-hcc
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWG-WRVSLALAAVPASILTLGA-LFL  173 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-wr~~~~~~~~~~~~~~~~~-~~~  173 (310)
                      ++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+...   .+ ||+.|++.+++.++..+.. +++
T Consensus       131 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~  207 (451)
T 1pw4_A          131 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMM  207 (451)
T ss_dssp             HHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999998765532   45 9999999888877665544 558


Q ss_pred             cCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhh-ccccchhHHHHHHHHHHHHHhhhHH
Q 021634          174 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKI-IQRKYRPQLLMAMAIPFFQQVTGIN  252 (310)
Q Consensus       174 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  252 (310)
                      ||+|++...++.+..+           ++.+.+.   +++.+ +   +.+.++. .+...+++.++...+..+......+
T Consensus       208 ~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (451)
T 1pw4_A          208 RDTPQSCGLPPIEEYK-----------NDYPDDY---NEKAE-Q---ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY  269 (451)
T ss_dssp             CCSSTTTCCCSCTTTC-----------CC--------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHhhcCCCChhhhc-----------ccccccc---hhhhh-c---ccccccchHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            8887653221110000           0000000   00000 0   1111111 1122233444445555555556677


Q ss_pred             HHHHhHHHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHh--ccchhhhhc
Q 021634          253 VIAFYAPLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRV--RWRKLDIYT  308 (310)
Q Consensus       253 ~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~--g~r~~~~~~  308 (310)
                      .+..+.|.++++ .|+++.+++.......++.+++.++.++  +.||+  +||+.+..+
T Consensus       270 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~~~~~~~  326 (451)
T 1pw4_A          270 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW--MSDKVFRGNRGATGVF  326 (451)
T ss_dssp             HHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCchhHHHH
Confidence            788999999987 6999999999999999999999999999  99999  999877644

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.95  E-value=7.2e-28  Score=206.00  Aligned_cols=240  Identities=16%  Similarity=0.200  Sum_probs=197.3

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccc
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVG   99 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~   99 (310)
                      |.+.+++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.++..++++++.+++.|++.|++.+
T Consensus        24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~  103 (375)
T 2gfp_A           24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTG  103 (375)
T ss_dssp             HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHH-HhhcccCCch
Q 021634          100 FANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL-GALFLPETPN  178 (310)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~-~~~~~~es~~  178 (310)
                      ...+....++.|++|+++|+++++..+.+..+|..+++.+++.+.+   ..+||+.+++.++..++..+ ..+++||+++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          104 VGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT---MWNWRACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             hhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            9999999999999999999999999999999999999999887764   35799999988888777665 3455788754


Q ss_pred             hhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHHHHhH
Q 021634          179 SLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVIAFYA  258 (310)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (310)
                      +..++                                  ++.+.++++.+++    +.++...+..+........+..+.
T Consensus       181 ~~~~~----------------------------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  222 (375)
T 2gfp_A          181 VDAPR----------------------------------TRLLTSYKTLFGN----SGFNCYLLMLIGGLAGIAAFEACS  222 (375)
T ss_dssp             TTCCC----------------------------------CCTTTCSTHHHHH----HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCccc----------------------------------ccHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHHHHH
Confidence            21100                                  0111223333332    333444444445555666778888


Q ss_pred             HHHHHH-cCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccc
Q 021634          259 PLLFRT-IGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWR  302 (310)
Q Consensus       259 ~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r  302 (310)
                      |.++++ .|.++.+++.......++.+++.++.++  +.||.+++
T Consensus       223 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~--l~~r~~~~  265 (375)
T 2gfp_A          223 GVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR--PNKRFSTL  265 (375)
T ss_dssp             SCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT--TTTHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            888876 6899999999999999999999999998  89998874

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.92  E-value=3.4e-24  Score=189.69  Aligned_cols=275  Identities=15%  Similarity=0.104  Sum_probs=183.3

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhh-hCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRA-FGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGF  100 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~  100 (310)
                      .++|+|+++.+.+++.+.+.++..++++++|+++|| +|||+++..+.++..++.++++++++++.++++|++.|++.+.
T Consensus        45 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~  124 (491)
T 4aps_A           45 STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGF  124 (491)
T ss_dssp             HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHH
T ss_pred             chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence            345699999999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             cccchhhhhhhcccccc--hhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcc-cCCc
Q 021634          101 ANQSVPLYLSEMAPARY--RGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL-PETP  177 (310)
Q Consensus       101 ~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~-~es~  177 (310)
                      ..+....++.|++|+++  |+.+.++++.+..+|..++|.+++.+.+.   .+||+.|++.++..++..+..++. |+..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  201 (491)
T 4aps_A          125 LKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKKTL  201 (491)
T ss_dssp             HHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence            99999999999999988  77788889999999999999998887654   469999999877766655554432 2211


Q ss_pred             hh---hHhccCcHHHHHHHHHH----------------hcCCcchHHHHHHH---HH------hhhccccccchhhhhcc
Q 021634          178 NS---LIQRKSDHQKAKLMLQR----------------VRGTNDVEAEFDDL---LK------ASSTAKTINHPFKKIIQ  229 (310)
Q Consensus       178 ~~---~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~  229 (310)
                      +.   ..++..+.++.++..+.                ..+..+.+......   ..      .....+....+  ...+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  279 (491)
T 4aps_A          202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVT--STEH  279 (491)
T ss_dssp             CSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred             cccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhccccc--HHHH
Confidence            10   01111112332222221                11111111100000   00      00000000000  0000


Q ss_pred             ccchhHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhh
Q 021634          230 RKYRPQLLMAMAIPFFQQVTGINVIAFYAPLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLD  305 (310)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~  305 (310)
                      ++.  .......+..+.....+.....+.|.+.++. +.+..+.+.......++..++..+.++  +.||++||+..
T Consensus       280 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~r~~~r~~~  352 (491)
T 4aps_A          280 LRV--VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAW--LWTAWKKNQPS  352 (491)
T ss_dssp             --C--TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHH--HHHHTTTC---
T ss_pred             HHH--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHH--HHHHHhccCCC
Confidence            111  1111122222222233344556677777664 777677788888888888999999999  99999998654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.84  E-value=1.3e-21  Score=169.60  Aligned_cols=254  Identities=11%  Similarity=-0.006  Sum_probs=155.1

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHH---HhhhhhhH-HHHHHHHHHHh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSA---LGGAAVNV-YMLIFGRLLLG   95 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~---~~~~~~~~-~~l~~~r~l~G   95 (310)
                      .++++++|+|+.+.+++.+.+.+++.++++++|+++||+|||++++.+..+..++..   ...+++.. ..+...+.+.|
T Consensus        32 ~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (417)
T 2cfq_A           32 IWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGG  111 (417)
T ss_dssp             HHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGG
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446778999999999999999999999999999999999999999988877655321   12232221 12345566666


Q ss_pred             hcccccccchhhhhhhcccc--cchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcc
Q 021634           96 VGVGFANQSVPLYLSEMAPA--RYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  173 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  173 (310)
                      ++.+...+.....+.++.++  ++|+...+.......+|..++|.+++.+.+    .+||+.|++.++..++..+..++.
T Consensus       112 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~  187 (417)
T 2cfq_A          112 IYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFA  187 (417)
T ss_dssp             SSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSS
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHc
Confidence            66555555545555555543  345666666666677888888888776654    359999988777765555555555


Q ss_pred             cCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHH
Q 021634          174 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV  253 (310)
Q Consensus       174 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (310)
                      ||+++...++++ .+          +              .++++....++++.++++.    ++...+..+.....+..
T Consensus       188 ~~~~~~~~~~~~-~~----------~--------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  238 (417)
T 2cfq_A          188 KTDAPSSATVAN-AV----------G--------------ANHSAFSLKLALELFRQPK----LWFLSLYVIGVSCTYDV  238 (417)
T ss_dssp             CCCCSCSSCSSS-SS----------S--------------SCCCCCCHHHHHHHTTCHH----HHHHHHHHHHHHHHHHH
T ss_pred             Cccccccccccc-cc----------c--------------cccccccHHHHHHHhcCCc----hhhHHHHHHHHHHHHHH
Confidence            443321000000 00          0              0000000112233333322    22222222222223344


Q ss_pred             HHHhHHHHHHHc-C---CCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          254 IAFYAPLLFRTI-G---LGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       254 ~~~~~~~~~~~~-g---~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      +..+.|.++++. +   .+....+....+..++.+++.+..++  +.||+|||+++..+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~--l~dr~g~~~~l~~~  295 (417)
T 2cfq_A          239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL--IINRIGGKNALLLA  295 (417)
T ss_dssp             HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH--HHHHhcHHHHHHHH
Confidence            445577777553 3   22444567777777888889999999  99999999987654

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.83  E-value=4.3e-20  Score=164.66  Aligned_cols=150  Identities=14%  Similarity=0.174  Sum_probs=132.9

Q ss_pred             cccccccc------cchhHHHHHHHHHHHHHHHHHhhhHHHHhhh-CchhHHHHHHHHHHHHHHHhhhhh-hHHHHHHHH
Q 021634           20 TKISNYCK------FDSQLLTSFTSSLYVAGLVASFVASSVTRAF-GRKPSVLMGGAAFLAGSALGGAAV-NVYMLIFGR   91 (310)
Q Consensus        20 ~~i~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r   91 (310)
                      +++.+++|      +++.+.+++.+++.++..+++++.|+++||+ |||+++..+.++..++.++.++++ +++.++++|
T Consensus        37 ~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (524)
T 2xut_A           37 PFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGL  116 (524)
T ss_dssp             HHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             HHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            44566777      9999999999999999999999999999999 999999999999999999999998 999999999


Q ss_pred             HHHhhcccccccchhhhhhhcccccchhhhhhH---HHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHH
Q 021634           92 LLLGVGVGFANQSVPLYLSEMAPARYRGAINNG---FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTL  168 (310)
Q Consensus        92 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~  168 (310)
                      ++.|++.+...+....++.|++|+++|+++.+.   .+.+..+|..++|.+++.+.+.   .+||+.|++.+++.++..+
T Consensus       117 ~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~  193 (524)
T 2xut_A          117 FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATV  193 (524)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999876666   8899999999999998776643   4799999998877766655


Q ss_pred             Hhhc
Q 021634          169 GALF  172 (310)
Q Consensus       169 ~~~~  172 (310)
                      ..++
T Consensus       194 ~~~~  197 (524)
T 2xut_A          194 FFWL  197 (524)
T ss_dssp             HHHS
T ss_pred             HHHH
Confidence            5544

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.47  E-value=7.6e-13  Score=115.35  Aligned_cols=151  Identities=13%  Similarity=0.061  Sum_probs=127.4

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhh--CchhHHHHHHHHHH-HHHHHhhhh--hhHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAF--GRKPSVLMGGAAFL-AGSALGGAA--VNVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~   94 (310)
                      ..+++.+|.++.+.+++.+...++..++.++.|+++||+  |||+.+..+..+.. ++.++..+.  .+.+.+.+..++.
T Consensus       277 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (451)
T 1pw4_A          277 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI  356 (451)
T ss_dssp             HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence            345556899999999999999999999999999999999  99999888877766 666666665  3677777888899


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHH-HHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhcc
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI-GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFL  173 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~~  173 (310)
                      |++.+...+....++.|.+|+++|+++.++.+....+ |..+++.+.+.+.+.   .+|+..|++.+++.++..+..++.
T Consensus       357 g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          357 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHHH
Confidence            9988888888889999999999999999999999999 999999998877654   358899988888777766665544

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.40  E-value=6.7e-13  Score=114.80  Aligned_cols=147  Identities=15%  Similarity=0.139  Sum_probs=118.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhcccccccchhhh
Q 021634           29 DSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLY  108 (310)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  108 (310)
                      +..+.++..++..++..++.++.|+++||+|||+++..+.++..++.+..++.++.+.+++..++.+++.+...+....+
T Consensus       257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  336 (417)
T 2cfq_A          257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY  336 (417)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566788888888889999999999999999999998888888887777777787777777777887766666667889


Q ss_pred             hhhcccccchhhhhhH-HHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccCCch
Q 021634          109 LSEMAPARYRGAINNG-FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPETPN  178 (310)
Q Consensus       109 ~~~~~~~~~r~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~es~~  178 (310)
                      +.|.+|++.|+++.+. ++....+|..++|.+++.+.+.   .+++..|.+.+++.++..+..++ .||+++
T Consensus       337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            9999999999999888 4778889999999998876642   46888888888777776655444 666544

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.38  E-value=2.9e-12  Score=113.02  Aligned_cols=158  Identities=16%  Similarity=0.088  Sum_probs=109.0

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA-----VNVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~   94 (310)
                      +.+.++.+.+............+...++.++.+++.||+|||+.++.+.....++.+..+..     ++...+...-+..
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4gc0_A          301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV  380 (491)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            44556667777777778888888999999999999999999999998888887776655432     1222222222222


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccC---CCchhHHHHHhhHHHHHHHHHHh-
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIK---GGWGWRVSLALAAVPASILTLGA-  170 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~wr~~~~~~~~~~~~~~~~~-  170 (310)
                      +.......++...+.+|.+|.+.|++++++......+|..+++.+...+....   ...++...|++.++++++..+.. 
T Consensus       381 ~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~  460 (491)
T 4gc0_A          381 AAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  460 (491)
T ss_dssp             HHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            22222334566789999999999999999999888888888776644333210   11234456777777776666544 


Q ss_pred             hcccCCc
Q 021634          171 LFLPETP  177 (310)
Q Consensus       171 ~~~~es~  177 (310)
                      +++||+.
T Consensus       461 ~~~PETk  467 (491)
T 4gc0_A          461 KFVPETK  467 (491)
T ss_dssp             HHCCCCT
T ss_pred             heecCCC
Confidence            6699984

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.29  E-value=1.8e-11  Score=106.20  Aligned_cols=145  Identities=9%  Similarity=-0.047  Sum_probs=116.0

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  101 (310)
                      +++.+|.++.+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++..+.++.+.+... ++.|++.+..
T Consensus       286 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~  364 (438)
T 3o7q_A          286 VEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIAL-TLCSAFMSIQ  364 (438)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHTTH
T ss_pred             hhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHH-HHHHHHHHHH
Confidence            556679999999999999999999999999999999999999999999999998888888777665444 8888888888


Q ss_pred             ccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhh
Q 021634          102 NQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGAL  171 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~  171 (310)
                      .+....+..|.+|++ |+.+.++.. ...+|..++|.+.+.+.+..+  +++..|++.++..++..+..+
T Consensus       365 ~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~  430 (438)
T 3o7q_A          365 YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG--NIPTAELIPALCFAVIFIFAR  430 (438)
T ss_dssp             HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT--SSGGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHH
Confidence            999999989999866 888887766 455888899999887765432  167777765555444443333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.24  E-value=1.3e-11  Score=108.81  Aligned_cols=145  Identities=10%  Similarity=-0.024  Sum_probs=111.9

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHH-----HHHHHHHHHHHHhhhhh---------hHHHHHH
Q 021634           24 NYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVL-----MGGAAFLAGSALGGAAV---------NVYMLIF   89 (310)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~-----~~~~~~~~~~~~~~~~~---------~~~~l~~   89 (310)
                      +.++.+..+.++..+...++..++.++.+++.||+|||+...     .+..+..++.++.....         +.+.+.+
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (491)
T 4aps_A          312 ERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVG  391 (491)
T ss_dssp             HSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHH
T ss_pred             HHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHH
Confidence            334445455677778888889999999999999999986654     67777777666655543         6677778


Q ss_pred             HHHHHhhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHH
Q 021634           90 GRLLLGVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLG  169 (310)
Q Consensus        90 ~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~  169 (310)
                      .-++.|++.+...+....++.|.+|++.|+++.++.+....+|..+++.+.+.+.+.    ++...|.+.++..++..+.
T Consensus       392 ~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  467 (491)
T 4aps_A          392 SWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK----SEVAYFSYFGLGSVVLGIV  467 (491)
T ss_dssp             HHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS----STTHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHHHHHH
Confidence            889999999988999999999999999999999999999999999999997766542    4556777767666666555


Q ss_pred             hhc
Q 021634          170 ALF  172 (310)
Q Consensus       170 ~~~  172 (310)
                      .++
T Consensus       468 ~~~  470 (491)
T 4aps_A          468 LVF  470 (491)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.74  E-value=2.4e-09  Score=90.94  Aligned_cols=134  Identities=15%  Similarity=0.063  Sum_probs=101.2

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHH-HHHHHH--Hhhh--hhhHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAA-FLAGSA--LGGA--AVNVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~-~~~~~~--~~~~--~~~~~~l~~~r~l~   94 (310)
                      ..+++++|.++.+.+.+.+...++..++.++.+++.||+|++.  ..+... ...+..  ....  .++.+.+.+..++.
T Consensus       224 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  301 (375)
T 2gfp_A          224 VLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALF  301 (375)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHH
Confidence            3445558999999999999999999999999999999999832  233322 222221  1112  23667777888999


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhh
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALA  159 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~  159 (310)
                      |++.+...+....++.|..| ++|+++.++.+....+|..+++.+.+.+.+   ..+|+..+.+.
T Consensus       302 g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~---~~~~~~~~~~~  362 (375)
T 2gfp_A          302 FFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQ---TGQGSLGLLMT  362 (375)
T ss_dssp             HHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhc---CCcccHHHHHH
Confidence            99999999999999999998 899999999999999999888888665543   23566665553

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.66  E-value=2.1e-08  Score=89.08  Aligned_cols=138  Identities=14%  Similarity=0.057  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHH----hhhCc----hhHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHhh
Q 021634           34 TSFTSSLYVAGLVASFVASSVT----RAFGR----KPSVLMGGAAFLAGSALGGAA---------VNVYMLIFGRLLLGV   96 (310)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~g~l~----dr~Gr----r~~~~~~~~~~~~~~~~~~~~---------~~~~~l~~~r~l~G~   96 (310)
                      +.+.+...++..++.++.+++.    ||.|+    ++.+..+.++.+++.++.++.         .+.+.+++..++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~  417 (524)
T 2xut_A          338 AMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTF  417 (524)
T ss_dssp             HHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHH
Confidence            3344444445555666666553    55443    345667777777777766653         366777788899999


Q ss_pred             cccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchh---------HHHHHhhHHHHHHHH
Q 021634           97 GVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGW---------RVSLALAAVPASILT  167 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~w---------r~~~~~~~~~~~~~~  167 (310)
                      +.+...+....++.|..|+++|++++++.+....+|..+++.+.+.+.+..+ .+|         +..|++.+.+.++..
T Consensus       418 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  496 (524)
T 2xut_A          418 GEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV-TEQIVQTGMSVTAFQMFFFAGFAILAA  496 (524)
T ss_dssp             HHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH-HHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccccccccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887654211 123         333666666666555


Q ss_pred             HHhhc
Q 021634          168 LGALF  172 (310)
Q Consensus       168 ~~~~~  172 (310)
                      +..++
T Consensus       497 ~~~~~  501 (524)
T 2xut_A          497 IVFAL  501 (524)
T ss_dssp             HHHC-
T ss_pred             HHHHH
Confidence            55444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.002

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 17/121 (14%), Positives = 38/121 (31%), Gaps = 4/121 (3%)

Query: 66  MGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFANQSVPLYLSEMAPARYRGAINN-G 124
           + G            A +   ++  + L    V F       Y++     R+   I    
Sbjct: 294 LAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVC 353

Query: 125 FQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALFLPETPNSLIQRK 184
           F F   +  +  + +      +    G++ +  +  + A   TL ++F    P  L   +
Sbjct: 354 FCFFKQLAMIFMSVL---AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410

Query: 185 S 185
            
Sbjct: 411 R 411

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.95
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.81
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.5
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.24

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.7e-28  Score=210.86  Aligned_cols=263  Identities=16%  Similarity=0.093  Sum_probs=194.2

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHh
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAA----VNVYMLIFGRLLLG   95 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~r~l~G   95 (310)
                      |.++ |+|+|++|.+++.+++.+++.++++++|+++||+|||+++..+.++..++.++++++    ++++.+++.|++.|
T Consensus        49 p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  127 (447)
T d1pw4a_          49 PYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG  127 (447)
T ss_dssp             HHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHH
T ss_pred             HHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHH
Confidence            5554 589999999999999999999999999999999999999999999999999888776    47788999999999


Q ss_pred             hcccccccchhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-cc
Q 021634           96 VGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LP  174 (310)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~  174 (310)
                      ++.+...+....++.|++|+++|++++++.+.+..+|..+++.++........  +||+.+++.+++.++..+..++ .+
T Consensus       128 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~~~~~  205 (447)
T d1pw4a_         128 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN--DWHAALYMPAFCAILVALFAFAMMR  205 (447)
T ss_dssp             HHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC--CSTTCTHHHHHHHHHHHHHHHHHCC
T ss_pred             HhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhh--cccccchhhhhhHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999888776554332  6999988877777766555544 66


Q ss_pred             CCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHHH
Q 021634          175 ETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINVI  254 (310)
Q Consensus       175 es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (310)
                      |+|+.......++.+           ++..++.+   ++.+++..   ..+...+...+++.++......+......+..
T Consensus       206 ~~~~~~~~~~~~~~~-----------~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (447)
T d1pw4a_         206 DTPQSCGLPPIEEYK-----------NDYPDDYN---EKAEQELT---AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGI  268 (447)
T ss_dssp             CSSTTTCCCSCTTTC-----------CC----------------C---CTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhcccchhhhhh-----------hhcccchh---hccccccc---hhhHHHHHHHcCchHHHHHHHhhhhhhhhhcc
Confidence            655432221110000           00000000   00000000   11111122233344444555555555566778


Q ss_pred             HHhHHHHHHHc-CCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchh
Q 021634          255 AFYAPLLFRTI-GLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKL  304 (310)
Q Consensus       255 ~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~  304 (310)
                      ..+.|.++++. +.+..+.+.......+..+++.++.++  +.||++|++.
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~  317 (447)
T d1pw4a_         269 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW--MSDKVFRGNR  317 (447)
T ss_dssp             HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHTSTTCH
T ss_pred             hhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhh--hhhhcccccc
Confidence            88889988654 899999999999999999999999999  9999988754

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=7.2e-20  Score=155.10  Aligned_cols=252  Identities=11%  Similarity=-0.062  Sum_probs=153.7

Q ss_pred             ccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHH----HHHHHHHhh
Q 021634           21 KISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYML----IFGRLLLGV   96 (310)
Q Consensus        21 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~r~l~G~   96 (310)
                      ++++++|+|+++.|++.+++.++..++++++|+++||+|||++++.+..+..++.....+..+....    .+.+.+.+.
T Consensus        33 ~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (417)
T d1pv7a_          33 WLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGI  112 (417)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTT
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhh
Confidence            4678899999999999999999999999999999999999999999999988888887776554443    345555555


Q ss_pred             cccccccchhhhhhhccccc--chhhhhhHHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHH-HHHHhhcc
Q 021634           97 GVGFANQSVPLYLSEMAPAR--YRGAINNGFQFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASI-LTLGALFL  173 (310)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~-~~~~~~~~  173 (310)
                      +.+...........+..+++  ++....+........+..+++.+++.+...    +|+..+........+ ..+..+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~  188 (417)
T d1pv7a_         113 YLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQFVFWLGSGCALILAVLLFFAK  188 (417)
T ss_dssp             TGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             cccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc----cccccccchhhHHHHHHHHHHHHh
Confidence            55555555444444444332  345566677777788888888887766643    455555554444444 44444556


Q ss_pred             cCCchhhHhccCcHHHHHHHHHHhcCCcchHHHHHHHHHhhhccccccchhhhhccccchhHHHHHHHHHHHHHhhhHHH
Q 021634          174 PETPNSLIQRKSDHQKAKLMLQRVRGTNDVEAEFDDLLKASSTAKTINHPFKKIIQRKYRPQLLMAMAIPFFQQVTGINV  253 (310)
Q Consensus       174 ~es~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (310)
                      +|+++....++   ++                       +..+++.......+..+.+..+.............    ..
T Consensus       189 ~~~~~~~~~~~---~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~  238 (417)
T d1pv7a_         189 TDAPSSATVAN---AV-----------------------GANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTY----DV  238 (417)
T ss_dssp             CCSCSSSCSSH---HH-----------------------HSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHH----HH
T ss_pred             cccccchhhhh---hh-----------------------hhhcccccccccccccccccccchhhhhHHHHHHH----Hh
Confidence            76654221110   00                       00001111111122222222222222222222221    12


Q ss_pred             HHHhHHHHHH----HcCCCchhHHHHHHHHHhhhhhhhhHHHHHHHHHHhccchhhhhc
Q 021634          254 IAFYAPLLFR----TIGLGRLKVCQLSKWIECGGSIGFGRNMWVKWMNRVRWRKLDIYT  308 (310)
Q Consensus       254 ~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~d~~g~r~~~~~~  308 (310)
                      .....+.+..    +.+.+....+.......++..++....++  +.||.++|+.+.++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~r~~~~~~~~~~  295 (417)
T d1pv7a_         239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPL--IINRIGGKNALLLA  295 (417)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHH--HHHHHCHHHHHHHH
T ss_pred             hhccccccccccccccccchhhhcccccccccccccchhhhhh--hhcccccccchhhh
Confidence            2222222222    22344556677777778888889999999  99999999987765

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=5.4e-14  Score=118.33  Aligned_cols=151  Identities=14%  Similarity=0.107  Sum_probs=130.1

Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhccccc
Q 021634           22 ISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFLAGSALGGAAVNVYMLIFGRLLLGVGVGFA  101 (310)
Q Consensus        22 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~  101 (310)
                      ..++.+.+....+...+...++..++..+.+++.||+|+|+.+..+.++..++.+...+.++.+.+++..++.|++.+..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~  329 (417)
T d1pv7a_         250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFL  329 (417)
T ss_dssp             SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHH
Confidence            44555667778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhhhcccccchhhhhhHH-HHHHHHHHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc-ccC
Q 021634          102 NQSVPLYLSEMAPARYRGAINNGF-QFSIGIGALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF-LPE  175 (310)
Q Consensus       102 ~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~-~~e  175 (310)
                      .+....++.|.+|++.|++..++. +....+|..++|.+.+.+.+.   .||+..+++.+++.++..+..++ +++
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999999999999999975 567788999999998877654   46999998888887776665544 443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=6.2e-11  Score=100.78  Aligned_cols=150  Identities=14%  Similarity=0.047  Sum_probs=113.5

Q ss_pred             cccccccccchhHHHHHHHHHHHHHHHHHhhhHHHHhhhCchhHHHHHHHHHH---HHHHHhh--hhhhHHHHHHHHHHH
Q 021634           20 TKISNYCKFDSQLLTSFTSSLYVAGLVASFVASSVTRAFGRKPSVLMGGAAFL---AGSALGG--AAVNVYMLIFGRLLL   94 (310)
Q Consensus        20 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~---~~~~~~~--~~~~~~~l~~~r~l~   94 (310)
                      ..+.+.++.+..+.++..+...++..++.++.|+++||++||+..........   ++.....  ...+.+...++-++.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (447)
T d1pw4a_         274 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVI  353 (447)
T ss_dssp             HHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred             hhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999998764433333222   2222222  235667777778888


Q ss_pred             hhcccccccchhhhhhhcccccchhhhhhHHHHHHHH-HHHHHHHHHhhhcccCCCchhHHHHHhhHHHHHHHHHHhhc
Q 021634           95 GVGVGFANQSVPLYLSEMAPARYRGAINNGFQFSIGI-GALAANFINYGTEQIKGGWGWRVSLALAAVPASILTLGALF  172 (310)
Q Consensus        95 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~wr~~~~~~~~~~~~~~~~~~~  172 (310)
                      |++.+...+....+..|.+|++.|+++.++.+....+ |.++++.+.+.+.+.   .||+..+++.+...++..+...+
T Consensus       354 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~---~g~~~~~~~~~~~~~~~~~~~~~  429 (447)
T d1pw4a_         354 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---FGWDGGFMVMIGGSILAVILLIV  429 (447)
T ss_dssp             HHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hChHHHHHHHHHHHHHHHHHHHH
Confidence            9888888888889999999999999999998877666 566778887766654   46888888777666665555443