Citrus Sinensis ID: 021654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MAENAAAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSSSSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAAKKAVEKETA
Secondary Structure (PSIPRED)
cccHHHcccccccEEEEEcccccHHHHHHHHHHHHHccccEEEccccccccccHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHcccccEEEEEcccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccccccccccEEEEEEcccEEEEEEEcccccccccccccccEEEEEcccEEEEcccccEEccccccEEEcccccEEEEEEEEccEEEEEEcccccEEEcHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHccccccEEEcccHHHHHHHHHHHcccEEEEEcccEcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccEEEEEccccccccccEcccccEEEEEEcccEEEEEEEcccccccccccccccEEEEEccEEEEEcccccEEEcccccEEEccccccEEEEEEEccEEEEEEcccccEEEcHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maenaaaaaphplkIIAGADSFGAELKDALVSHLRSlnidvedlgtsdyysigaevgrrvsssdssdtttrgLVACGTGVGVAIfanknpgvfattcltpadalntrsinNCNVLAVSGMSTSKESAVEILDTWlktpfkapcpasgfkpweenISCFFdksmtempligkndkldsdsssstcsicclvknrelnpvemipggsmkiiresPTSAIVRfkagsvepahhhtfghDLVVLQGKKsvwnltkgerfdltvgdylftpagdvhrvkyYEETEFfikwdgrwdmFFDEDLEAAKKAVEKETA
Flexible Loop (DISEMBL)
maenaaaaaphplkIIAGADSFGAELKDALVSHLRSlnidvedlgtsDYYSIGAevgrrvsssdssdtttRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKndkldsdsssSTCSICClvknrelnpvemIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAAKKAVEKETA
Low Complexity Region (SEG)
MAENaaaaaPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVsssdssdtttRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLdsdssssTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLeaakkavekeTA
Disordered region (IsUnstruct)
************LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV*************TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMT******************TCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDED*************
Disordered Region (DISOPRED)
**************IIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKA********************************************ICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAA*********
Disordered Region (DISEMBL)
*********PHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV**************RGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKN***********CSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAA*********
Disordered Region (DISPRO)
**********HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIG**********SSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAAKKAVE*E**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAENAAAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSSSSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAAKKAVEKETA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q05212	310	DNA-damage-repair/tolerat	yes	no	0.974	0.970	0.694	1e-126
P37351	149	Ribose-5-phosphate isomer	N/A	no	0.401	0.832	0.345	6e-12
P26424	171	Galactose-6-phosphate iso	yes	no	0.430	0.777	0.314	1e-10
P53527	152	Probable ribose-5-phospha	yes	no	0.414	0.842	0.287	9e-10
P47636	152	Probable ribose-5-phospha	yes	no	0.404	0.822	0.313	1e-09
Q4L873	171	Galactose-6-phosphate iso	yes	no	0.417	0.754	0.312	2e-09
Q8CRJ3	171	Galactose-6-phosphate iso	yes	no	0.417	0.754	0.312	3e-09
Q5HM36	171	Galactose-6-phosphate iso	yes	no	0.417	0.754	0.312	3e-09
Q8E4R6	171	Galactose-6-phosphate iso	N/A	no	0.430	0.777	0.293	2e-08
A4VV69	171	Galactose-6-phosphate iso	yes	no	0.420	0.760	0.301	3e-08

>sp|Q05212|DR102_ARATH DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2

 Score =  452 bits (1163), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/308 (69%), Positives = 251/308 (81%), Gaps = 7/308 (2%)

Query: 5   AAAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSD 64
           A +A   PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGRRVS+S 
Sbjct: 4   AVSAVDQPLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASS 63

Query: 65  SSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
           SS+   RGLV CGTGVGVA+FANK PGV+A TCL+  DA+N RSI+NCNVLA SG+ TS 
Sbjct: 64  SSEV--RGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSP 121

Query: 125 ESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDS-----DS 179
           E+A+EI D W+KTPFK+PCPASG +PW   IS F D S++EM  IGK+   DS     D 
Sbjct: 122 ETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDE 181

Query: 180 SSSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVV 239
           ++++C ICCL KNRE  PV+++PGGSMKI+RE+PTSAIVRFKAGSVEPAHHHTFGHDLVV
Sbjct: 182 TTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTFGHDLVV 241

Query: 240 LQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEA 299
           ++GKKSVWNL+K ER DL  GDYLFTPAGDVHRVKY+E+TEFFI WDG WD+F DEDLE 
Sbjct: 242 IKGKKSVWNLSKKERADLVDGDYLFTPAGDVHRVKYHEDTEFFITWDGHWDIFLDEDLET 301

Query: 300 AKKAVEKE 307
           AKKA+E+E
Sbjct: 302 AKKAIEEE 309

Arabidopsis thaliana (taxid: 3702)

>sp|P37351|RPIB_ECOLI Ribose-5-phosphate isomerase B OS=Escherichia coli (strain K12) GN=rpiB PE=1 SV=2

 Score = 71.6 bits (174), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 9/133 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSDT 68
           KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V+  +    
Sbjct: 3   KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG- 61

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct: 62  ---GILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAK 118

Query: 129 EILDTWLKTPFKA 141
            I+D WL   ++ 
Sbjct: 119 MIVDAWLGAQYEG 131

In addition to its activity on D-ribose 5-phosphate it probably also has activity on D-allose 6-phosphate.

Escherichia coli (strain K12) (taxid: 83333)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|P26424|LACB_STRMU Galactose-6-phosphate isomerase subunit LacB OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=lacB PE=3 SV=2

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 68/143 (47%), Gaps = 10/143 (6%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV-GRRVSSSDSSDTTTR 71
           +KI  G D    ++K  L  HL+    +V D+GT D+      + G++V  + SS     
Sbjct: 1   MKIAIGCDHIVTDVKMELSKHLKEEGYEVLDVGTYDFTRTHYPIFGKKVGEAVSSGEADL 60

Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G+  CGTGVG++  ANK PGV          AL ++   N NV++  G    K    +I+
Sbjct: 61  GVCMCGTGVGISNAANKVPGVRTALVRDMTSALYSKEELNANVVSFGGAIIGKLLLFDIV 120

Query: 132 DTWLKTPFKAPCPASGFKPWEEN 154
           D ++K           +KP EEN
Sbjct: 121 DAFIKAQ---------YKPTEEN 134

Streptococcus mutans (taxid: 1309)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P53527|RPIB_MYCPN Probable ribose-5-phosphate isomerase B OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=rpiB PE=1 SV=1

 Score = 64.7 bits (156), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 4/132 (3%)

Query: 11  HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIG--AEVGRRVSSSDSSDT 68
           HP+ I   +D  G ELK  ++ HL    + V DLG ++   +    +    ++ +  ++ 
Sbjct: 5   HPIYI--ASDHTGLELKSLVIKHLEQQKLQVIDLGPTELDPLDDYPDYAFLLAQTMQANP 62

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
            + G++ CGTGVGV + ANK  G+ A   +    A   R  ++ NVL +S      E  +
Sbjct: 63  NSLGILICGTGVGVCMAANKAKGILAALVVDSKTAALARQHDDANVLCLSSRFVVPEENI 122

Query: 129 EILDTWLKTPFK 140
           +I+D +L+  F+
Sbjct: 123 KIVDEFLQAQFE 134

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|P47636|RPIB_MYCGE Probable ribose-5-phosphate isomerase B OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=rpiB PE=3 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLG------TSDYYSIGAEVGRRVSSSDSS 66
             I   +D  G  LK  +  HL++   +V DLG        DY      V  +V  +   
Sbjct: 3   FNIFIASDHTGLTLKKIISEHLKTKQFNVVDLGPNYFDANDDYPDFAFLVADKVKKNSDK 62

Query: 67  DTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
           D    G++ CGTGVGV + ANK  GV A   ++   A   R  +N NVL +S    +   
Sbjct: 63  DL---GILICGTGVGVCMAANKVKGVLAALVVSEKTAALARQHDNANVLCLSSRFVTDSE 119

Query: 127 AVEILDTWLKTPFK 140
            ++I+D +LK  F+
Sbjct: 120 NIKIVDDFLKANFE 133

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|Q4L873|LACB_STAHJ Galactose-6-phosphate isomerase subunit LacB OS=Staphylococcus haemolyticus (strain JCSC1435) GN=lacB PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 18/147 (12%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSI-GAEVGRRVSSSDSSD 67
           +KI  G D    + K  +  HL++   +V D+GT D+    Y I G +VG +V+S ++  
Sbjct: 1   MKIAIGCDHIVTDTKMEVSQHLKAQGHEVIDVGTYDFTRTHYPIFGKKVGEKVASGEAD- 59

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+  CGTGVG++  ANK PGV          AL ++   N NV++  G    +   
Sbjct: 60  ---LGVCICGTGVGISNAANKVPGVRTALVRDMTSALYSKEELNANVVSFGGKVAGELFI 116

Query: 128 VEILDTWLKTPFKAPCPASGFKPWEEN 154
            +I+D ++K           +KP EEN
Sbjct: 117 FDIVDAFIKAE---------YKPTEEN 134

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8CRJ3|LACB_STAES Galactose-6-phosphate isomerase subunit LacB OS=Staphylococcus epidermidis (strain ATCC 12228) GN=lacB PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 18/147 (12%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSI-GAEVGRRVSSSDSSD 67
           +KI  G D    + K  +  HL+S   +V D+GT D+    Y I G +VG +V+S ++  
Sbjct: 1   MKIAIGCDHIVTDTKMEVSQHLKSQGHEVIDVGTYDFTRTHYPIYGKKVGEKVASGEAD- 59

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+  CGTGVG++  ANK PGV          AL ++   N NV++  G    +   
Sbjct: 60  ---LGVCICGTGVGISNAANKVPGVRTALVRDMTSALYSKEELNANVVSFGGKVAGELFI 116

Query: 128 VEILDTWLKTPFKAPCPASGFKPWEEN 154
            +I+D +++           +KP EEN
Sbjct: 117 FDIVDAFIEAE---------YKPTEEN 134

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5HM36|LACB_STAEQ Galactose-6-phosphate isomerase subunit LacB OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=lacB PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 18/147 (12%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSI-GAEVGRRVSSSDSSD 67
           +KI  G D    + K  +  HL+S   +V D+GT D+    Y I G +VG +V+S ++  
Sbjct: 1   MKIAIGCDHIVTDTKMEVSQHLKSQGHEVIDVGTYDFTRTHYPIYGKKVGEKVASGEAD- 59

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+  CGTGVG++  ANK PGV          AL ++   N NV++  G    +   
Sbjct: 60  ---LGVCICGTGVGISNAANKVPGVRTALVRDMTSALYSKEELNANVVSFGGKVAGELFI 116

Query: 128 VEILDTWLKTPFKAPCPASGFKPWEEN 154
            +I+D +++           +KP EEN
Sbjct: 117 FDIVDAFIEAE---------YKPTEEN 134

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8E4R6|LACB1_STRA3 Galactose-6-phosphate isomerase subunit LacB 1 OS=Streptococcus agalactiae serotype III (strain NEM316) GN=lacB1 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 10/143 (6%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV-GRRVSSSDSSDTTTR 71
           +KI  G D      K A+V  L+S   +V+D GT D+      + G++V  + +S     
Sbjct: 1   MKIAIGCDHIVTNEKMAVVDFLKSKGYEVQDYGTYDHVRTHYPIYGKKVGEAVASGKAEL 60

Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G+  CGTGVG+    NK PG+ +        AL  +   N NV+   G  T +    +I+
Sbjct: 61  GICICGTGVGINNAVNKVPGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDII 120

Query: 132 DTWLKTPFKAPCPASGFKPWEEN 154
           +  L            +KP EEN
Sbjct: 121 EALLHAE---------YKPSEEN 134

Streptococcus agalactiae serotype III (taxid: 216495)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A4VV69|LACB_STRSY Galactose-6-phosphate isomerase subunit LacB OS=Streptococcus suis (strain 05ZYH33) GN=lacB PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 16/146 (10%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSD----YYSIGAEVGRRVSSSDSSDT 68
           +KI  G D      K A+V +L++   +V D GT D    +Y I    G++V  +  S  
Sbjct: 1   MKIAIGCDHIVTYEKIAVVDYLKNQGYEVLDFGTYDNVRTHYPI---FGKKVGEAVVSGQ 57

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G+  CGTGVG+    NK PGV +        AL  +   N NV+   G  T +    
Sbjct: 58  ADLGICICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNANVIGFGGKITGELLMC 117

Query: 129 EILDTWLKTPFKAPCPASGFKPWEEN 154
           +I++ ++K           +KP EEN
Sbjct: 118 DIIEAFIKAE---------YKPTEEN 134

Streptococcus suis (strain 05ZYH33) (taxid: 391295)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
359487816	312	PREDICTED: DNA-damage-repair/toleration	0.964	0.955	0.746	1e-132
225451267	300	PREDICTED: DNA-damage-repair/toleration	0.964	0.993	0.746	1e-132
147812118	316	hypothetical protein VITISV_010562 [Viti	0.964	0.943	0.746	1e-132
255542356	318	DNA-damage-repair/toleration protein DRT	0.977	0.949	0.707	1e-128
356573087	300	PREDICTED: DNA-damage-repair/toleration	0.951	0.98	0.721	1e-127
255639307	300	unknown [Glycine max]	0.951	0.98	0.721	1e-127
84468444	302	putative DNA-damage-repair/toleration pr	0.935	0.956	0.753	1e-127
357512241	304	DNA-damage-repair/toleration protein DRT	0.941	0.957	0.746	1e-125
18397039	310	DNA-damage-repair/toleration protein DRT	0.974	0.970	0.694	1e-125
224131318	333	predicted protein [Populus trichocarpa]	0.951	0.882	0.693	1e-124

>gi|359487816|ref|XP_003633653.1| PREDICTED: DNA-damage-repair/toleration protein DRT102-like isoform 2 [Vitis vinifera]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/308 (74%), Positives = 258/308 (83%), Gaps = 10/308 (3%)

Query: 1   MAENAAAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRV 60
           MAE+     PH  KI+ GADSFG  LK+ALVSHL+SLNI+VED+GT  YYS+ AE+GRRV
Sbjct: 1   MAEDGE---PHRFKIVTGADSFGCSLKEALVSHLKSLNIEVEDVGTDSYYSVAAEIGRRV 57

Query: 61  SSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM 120
           SSS      TRGL+ACGTGVGVA+FANK PGVFA TCL+ ADALN RSINN NVLAVSGM
Sbjct: 58  SSSPED---TRGLLACGTGVGVAMFANKFPGVFAATCLSAADALNARSINNSNVLAVSGM 114

Query: 121 STSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSS 180
           ST+ ESAVEILDTWLKTPFK+PCPAS FKPW + I  F D S++EM  IG      SDS 
Sbjct: 115 STAPESAVEILDTWLKTPFKSPCPASEFKPWPKEIESFLDNSVSEMSKIGSEKTKTSDS- 173

Query: 181 SSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVL 240
              CSICCLVKNRELNP+++IPGGSMKI+RESPTSA+VRF+AGSVEPAHHHTFGHDLVV+
Sbjct: 174 ---CSICCLVKNRELNPIDIIPGGSMKILRESPTSAVVRFEAGSVEPAHHHTFGHDLVVM 230

Query: 241 QGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAA 300
           +GKKSVWNLTK ERFDL VGDYL+TPAGDVHRVKYYE+TEFFIKWDG WDMFFDEDL  A
Sbjct: 231 KGKKSVWNLTKKERFDLIVGDYLYTPAGDVHRVKYYEDTEFFIKWDGHWDMFFDEDLATA 290

Query: 301 KKAVEKET 308
           K+A EKE+
Sbjct: 291 KEAAEKES 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451267|ref|XP_002277284.1| PREDICTED: DNA-damage-repair/toleration protein DRT102-like isoform 1 [Vitis vinifera]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/308 (74%), Positives = 258/308 (83%), Gaps = 10/308 (3%)

Query: 1   MAENAAAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRV 60
           MAE+     PH  KI+ GADSFG  LK+ALVSHL+SLNI+VED+GT  YYS+ AE+GRRV
Sbjct: 1   MAEDGE---PHRFKIVTGADSFGCSLKEALVSHLKSLNIEVEDVGTDSYYSVAAEIGRRV 57

Query: 61  SSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM 120
           SSS      TRGL+ACGTGVGVA+FANK PGVFA TCL+ ADALN RSINN NVLAVSGM
Sbjct: 58  SSSPED---TRGLLACGTGVGVAMFANKFPGVFAATCLSAADALNARSINNSNVLAVSGM 114

Query: 121 STSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSS 180
           ST+ ESAVEILDTWLKTPFK+PCPAS FKPW + I  F D S++EM  IG      SDS 
Sbjct: 115 STAPESAVEILDTWLKTPFKSPCPASEFKPWPKEIESFLDNSVSEMSKIGSEKTKTSDS- 173

Query: 181 SSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVL 240
              CSICCLVKNRELNP+++IPGGSMKI+RESPTSA+VRF+AGSVEPAHHHTFGHDLVV+
Sbjct: 174 ---CSICCLVKNRELNPIDIIPGGSMKILRESPTSAVVRFEAGSVEPAHHHTFGHDLVVM 230

Query: 241 QGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAA 300
           +GKKSVWNLTK ERFDL VGDYL+TPAGDVHRVKYYE+TEFFIKWDG WDMFFDEDL  A
Sbjct: 231 KGKKSVWNLTKKERFDLIVGDYLYTPAGDVHRVKYYEDTEFFIKWDGHWDMFFDEDLATA 290

Query: 301 KKAVEKET 308
           K+A EKE+
Sbjct: 291 KEAAEKES 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812118|emb|CAN65782.1| hypothetical protein VITISV_010562 [Vitis vinifera]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/308 (74%), Positives = 258/308 (83%), Gaps = 10/308 (3%)

Query: 1   MAENAAAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRV 60
           MAE+     PH  KI+ GADSFG  LK+ALVSHL+SLNI+VED+GT  YYS+ AE+GRRV
Sbjct: 1   MAEDGE---PHRFKIVTGADSFGCSLKEALVSHLKSLNIEVEDVGTDSYYSVAAEIGRRV 57

Query: 61  SSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM 120
           SSS      TRGL+ACGTGVGVA+FANK PGVFA TCL+ ADALN RSINN NVLAVSGM
Sbjct: 58  SSSPED---TRGLLACGTGVGVAMFANKFPGVFAATCLSAADALNARSINNSNVLAVSGM 114

Query: 121 STSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSS 180
           ST+ ESAVEILDTWLKTPFK+PCPAS FKPW + I  F D S++EM  IG      SDS 
Sbjct: 115 STAPESAVEILDTWLKTPFKSPCPASEFKPWPKEIESFLDNSVSEMSKIGSEKTKTSDS- 173

Query: 181 SSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVL 240
              CSICCLVKNRELNP+++IPGGSMKI+RESPTSA+VRF+AGSVEPAHHHTFGHDLVV+
Sbjct: 174 ---CSICCLVKNRELNPIDIIPGGSMKILRESPTSAVVRFEAGSVEPAHHHTFGHDLVVM 230

Query: 241 QGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAA 300
           +GKKSVWNLTK ERFDL VGDYL+TPAGDVHRVKYYE+TEFFIKWDG WDMFFDEDL  A
Sbjct: 231 KGKKSVWNLTKKERFDLIVGDYLYTPAGDVHRVKYYEDTEFFIKWDGHWDMFFDEDLATA 290

Query: 301 KKAVEKET 308
           K+A EKE+
Sbjct: 291 KEAAEKES 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542356|ref|XP_002512241.1| DNA-damage-repair/toleration protein DRT102, putative [Ricinus communis] gi|223548202|gb|EEF49693.1| DNA-damage-repair/toleration protein DRT102, putative [Ricinus communis]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/308 (70%), Positives = 258/308 (83%), Gaps = 6/308 (1%)

Query: 6   AAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDS 65
           AA +P PLKII GADS G  LKDAL+SHLRSLNIDVEDLGTS YY+IGAEVGRRVS+++S
Sbjct: 2   AADSPQPLKIITGADSLGCSLKDALISHLRSLNIDVEDLGTSSYYTIGAEVGRRVSAANS 61

Query: 66  SDTT--TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTS 123
           +  +   RGLVACGTG GV+IFANK PGV+A+TCL+  DA NTRSINNCNVLAVSG+ T+
Sbjct: 62  TSPSPEIRGLVACGTGAGVSIFANKFPGVYASTCLSTGDAANTRSINNCNVLAVSGLFTT 121

Query: 124 KESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGK----NDKLDSDS 179
            ESA++ILDTWL TPFKAPCPAS   PW   IS F D S+ EMP IG+    N K +   
Sbjct: 122 PESAIQILDTWLSTPFKAPCPASNNAPWSSEISEFLDNSLLEMPEIGQKVDTNIKEEEKE 181

Query: 180 SSSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVV 239
           + STCS+CCL KNR+L+ +++IPGGSMKI+RESPTSAIVRFKAGS+EPAHHHTFGHD+VV
Sbjct: 182 TLSTCSLCCLAKNRKLDEIDLIPGGSMKILRESPTSAIVRFKAGSIEPAHHHTFGHDIVV 241

Query: 240 LQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEA 299
           ++G KSVWNL+K  ++DL VGDYLFTPAGDVHRVKY+E+TEFFIKW+G+WD+FFDEDLE 
Sbjct: 242 MKGSKSVWNLSKKVKYDLGVGDYLFTPAGDVHRVKYFEDTEFFIKWEGKWDLFFDEDLEV 301

Query: 300 AKKAVEKE 307
           AK  +EKE
Sbjct: 302 AKTEIEKE 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573087|ref|XP_003554696.1| PREDICTED: DNA-damage-repair/toleration protein DRT102-like [Glycine max]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/302 (72%), Positives = 249/302 (82%), Gaps = 8/302 (2%)

Query: 6   AAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDS 65
           AA    P+KIIA AD FG  LKDALV+HLR+LNI VEDLGTS YYS GAEVGRRVS S S
Sbjct: 2   AAEPTRPVKIIAAADDFGTPLKDALVAHLRTLNIQVEDLGTSSYYSAGAEVGRRVSQSSS 61

Query: 66  SDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKE 125
           SD   RGLVACGTG GV+IFANK PGV+A TCL+P+DA+N RSINN NVLAVSG  TS E
Sbjct: 62  SDI--RGLVACGTGAGVSIFANKYPGVYAATCLSPSDAVNARSINNSNVLAVSGKYTSPE 119

Query: 126 SAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSSSSTCS 185
           +AVE+LD WL TPFK+ CPA+  KPW + I  F + S+ EMP IGK    D      TC+
Sbjct: 120 AAVEVLDAWLNTPFKSACPANDDKPWPQEIHSFLEHSLVEMPEIGKEGAFD------TCA 173

Query: 186 ICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKS 245
           +CCLVKNRELNP+++IPGGSMKI+RE+PTSA VRFKAGSVEPAHHHTFGHDLVV++GKKS
Sbjct: 174 VCCLVKNRELNPIDLIPGGSMKILRETPTSAFVRFKAGSVEPAHHHTFGHDLVVIEGKKS 233

Query: 246 VWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAAKKAVE 305
           VWNLTK +R+DLTVGDYLFTP GDVHRVKY+E+TEFFIKWDG WDMFFDEDL+ AK A++
Sbjct: 234 VWNLTKEQRYDLTVGDYLFTPPGDVHRVKYHEDTEFFIKWDGHWDMFFDEDLDTAKNAID 293

Query: 306 KE 307
           KE
Sbjct: 294 KE 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639307|gb|ACU19951.1| unknown [Glycine max]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/302 (72%), Positives = 248/302 (82%), Gaps = 8/302 (2%)

Query: 6   AAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDS 65
           AA    P+KIIA AD FG  LKDALV+HLR+LNI VEDLGTS YYS GAEVGRRVS S S
Sbjct: 2   AAEPTRPVKIIAAADDFGTPLKDALVAHLRTLNIQVEDLGTSSYYSAGAEVGRRVSQSSS 61

Query: 66  SDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKE 125
           SD   RGLVACGTG GV+IFANK PGV+A TCL+P+DA+N RSINN NVLAVSG  TS E
Sbjct: 62  SDI--RGLVACGTGAGVSIFANKYPGVYAATCLSPSDAVNARSINNSNVLAVSGKYTSPE 119

Query: 126 SAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSSSSTCS 185
           +AVE+LD WL TPFK+ CPA+  KPW + I  F + S+ EMP IGK    D      TC+
Sbjct: 120 AAVEVLDAWLNTPFKSACPANDDKPWPQEIHSFLEHSLVEMPEIGKEGAFD------TCA 173

Query: 186 ICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKS 245
           +CCLVKNRELNP+++IPGGSMKI+RE+PTSA VRFKAGSVEPAHHHTFGHDLVV++GKKS
Sbjct: 174 VCCLVKNRELNPIDLIPGGSMKILRETPTSAFVRFKAGSVEPAHHHTFGHDLVVIEGKKS 233

Query: 246 VWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAAKKAVE 305
           VWNLTK  R+DLTVGDYLFTP GDVHRVKY+E+TEFFIKWDG WDMFFDEDL+ AK A++
Sbjct: 234 VWNLTKEPRYDLTVGDYLFTPPGDVHRVKYHEDTEFFIKWDGHWDMFFDEDLDTAKNAID 293

Query: 306 KE 307
           KE
Sbjct: 294 KE 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468444|dbj|BAE71305.1| putative DNA-damage-repair/toleration protein DRT102 [Trifolium pratense]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/296 (75%), Positives = 251/296 (84%), Gaps = 7/296 (2%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDT-TTR 71
           +KIIAGAD FG  LKDALVSHLRSLNI VEDLGTS YYS GAEVGRRVS S SS +   R
Sbjct: 8   IKIIAGADDFGTPLKDALVSHLRSLNIQVEDLGTSSYYSAGAEVGRRVSQSISSSSPEVR 67

Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           GLVACGTG GV+IFANK PGVFA TCLTP+DA+N RSINN NVLAVSG  TS ESA+EI+
Sbjct: 68  GLVACGTGAGVSIFANKFPGVFAATCLTPSDAVNARSINNSNVLAVSGKYTSTESAIEIV 127

Query: 132 DTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSSSSTCSICCLVK 191
           +TWL TPFK+PCPA+  K W + I  F DKS+ EMP IGK + +D      TC++CCLVK
Sbjct: 128 NTWLNTPFKSPCPANDNKSWPQEIENFLDKSLVEMPEIGKGEPVD------TCAVCCLVK 181

Query: 192 NRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK 251
           NRELNP+++IPGGSMKI+RE+PTSA VRFKAGSVEPAHHHTFGHDLVV++GKKSVWNLTK
Sbjct: 182 NRELNPIDLIPGGSMKIVRETPTSAFVRFKAGSVEPAHHHTFGHDLVVIEGKKSVWNLTK 241

Query: 252 GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAAKKAVEKE 307
            ER+DLTVGDYLFTPAGDVHRVKY+E+TEFFIKWDG WDMFFDEDLE  K A++KE
Sbjct: 242 EERYDLTVGDYLFTPAGDVHRVKYHEDTEFFIKWDGHWDMFFDEDLETGKIAIDKE 297

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512241|ref|XP_003626409.1| DNA-damage-repair/toleration protein DRT102 [Medicago truncatula] gi|355501424|gb|AES82627.1| DNA-damage-repair/toleration protein DRT102 [Medicago truncatula]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/296 (74%), Positives = 249/296 (84%), Gaps = 5/296 (1%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTT-TR 71
           +KIIAGAD FG  LKDAL+SHLRSLNI VEDLGTS YYS GA VGRRVS S SS +   R
Sbjct: 8   IKIIAGADDFGTPLKDALLSHLRSLNIQVEDLGTSSYYSAGAVVGRRVSQSISSSSQEVR 67

Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           GLVACGTG GV+IFANK PGVFA TCLTP+DA+N RSINN NVLAVSG  TS E+A+EI+
Sbjct: 68  GLVACGTGAGVSIFANKFPGVFAATCLTPSDAVNARSINNSNVLAVSGKYTSPETAIEIV 127

Query: 132 DTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSSSSTCSICCLVK 191
            TWL TPFK+PCPA+  KPW + I  F DKS+ EMP IGK++    DS    C++CCLVK
Sbjct: 128 KTWLNTPFKSPCPANDNKPWPQEIENFLDKSLVEMPEIGKSEPEPVDS----CAVCCLVK 183

Query: 192 NRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK 251
           NRELNP+++IPGGSMKIIRE+PTSA VRFKAGSVEPAHHHTFGHDLVV++GKKSVWNLTK
Sbjct: 184 NRELNPIDLIPGGSMKIIRETPTSAFVRFKAGSVEPAHHHTFGHDLVVIEGKKSVWNLTK 243

Query: 252 GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAAKKAVEKE 307
            ER+DLTVGDYLFTPAGDVHRVKY+E+TEFFIKWD  WDMFFDEDLE  K A++KE
Sbjct: 244 EERYDLTVGDYLFTPAGDVHRVKYHEDTEFFIKWDSHWDMFFDEDLETGKIAIDKE 299

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397039|ref|NP_566241.1| DNA-damage-repair/toleration protein DRT102 [Arabidopsis thaliana] gi|148872800|sp|Q05212.2|DR102_ARATH RecName: Full=DNA-damage-repair/toleration protein DRT102 gi|15529165|gb|AAK97677.1| AT3g04880/T9J14_17 [Arabidopsis thaliana] gi|23505883|gb|AAN28801.1| At3g04880/T9J14_17 [Arabidopsis thaliana] gi|332640629|gb|AEE74150.1| DNA-damage-repair/toleration protein DRT102 [Arabidopsis thaliana]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 214/308 (69%), Positives = 251/308 (81%), Gaps = 7/308 (2%)

Query: 5   AAAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSD 64
           A +A   PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGRRVS+S 
Sbjct: 4   AVSAVDQPLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASS 63

Query: 65  SSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
           SS+   RGLV CGTGVGVA+FANK PGV+A TCL+  DA+N RSI+NCNVLA SG+ TS 
Sbjct: 64  SSEV--RGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSP 121

Query: 125 ESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDS-----DS 179
           E+A+EI D W+KTPFK+PCPASG +PW   IS F D S++EM  IGK+   DS     D 
Sbjct: 122 ETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDE 181

Query: 180 SSSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVV 239
           ++++C ICCL KNRE  PV+++PGGSMKI+RE+PTSAIVRFKAGSVEPAHHHTFGHDLVV
Sbjct: 182 TTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTFGHDLVV 241

Query: 240 LQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEA 299
           ++GKKSVWNL+K ER DL  GDYLFTPAGDVHRVKY+E+TEFFI WDG WD+F DEDLE 
Sbjct: 242 IKGKKSVWNLSKKERADLVDGDYLFTPAGDVHRVKYHEDTEFFITWDGHWDIFLDEDLET 301

Query: 300 AKKAVEKE 307
           AKKA+E+E
Sbjct: 302 AKKAIEEE 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131318|ref|XP_002328509.1| predicted protein [Populus trichocarpa] gi|222838224|gb|EEE76589.1| predicted protein [Populus trichocarpa]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 210/303 (69%), Positives = 253/303 (83%), Gaps = 9/303 (2%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTT---- 69
           KIIAGAD+FG  LKD LVSHLRSLNI+VEDLGTS YYSI AEVGR VS++ ++ ++    
Sbjct: 22  KIIAGADAFGCTLKDTLVSHLRSLNIEVEDLGTSSYYSIAAEVGRLVSAASTTPSSPTPE 81

Query: 70  TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVE 129
            RGLVACGTGVGV+IFANK PGVFA TCL+ ADA N+RSINN NVLAVSGM+TS +SA+E
Sbjct: 82  IRGLVACGTGVGVSIFANKFPGVFAATCLSTADAANSRSINNSNVLAVSGMATSPDSAIE 141

Query: 130 ILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKN-----DKLDSDSSSSTC 184
           ILDTWLKTPFK+PCPAS   PW E I  F D S++EMP+IG        + +   ++S C
Sbjct: 142 ILDTWLKTPFKSPCPASNSAPWGEEIESFLDNSLSEMPVIGAKLSDPKQQEEGSINTSAC 201

Query: 185 SICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKK 244
           ++CCLVKNR+L+P+E+IPGG+MKI+RESPTSAIV FKAGSVEPAHHHTFGHDLVVL+G K
Sbjct: 202 ALCCLVKNRKLDPIEIIPGGAMKIVRESPTSAIVSFKAGSVEPAHHHTFGHDLVVLKGSK 261

Query: 245 SVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLEAAKKAV 304
            VWN++K  ++DL VGDYLFTPAGDVHRVKY+E+TEFFIKW+G+WD+FFDE++E AK  +
Sbjct: 262 RVWNMSKKAKYDLVVGDYLFTPAGDVHRVKYFEDTEFFIKWEGKWDIFFDEEMEVAKSEI 321

Query: 305 EKE 307
           EKE
Sbjct: 322 EKE 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2114890	310	DRT102 "DNA-DAMAGE-REPAIR/TOLE	0.919	0.916	0.687	5.7e-107
TIGR_CMR|CHY_2558	159	CHY_2558 "ribose 5-phosphate i	0.414	0.805	0.356	6.9e-15
UNIPROTKB|P37351	149	rpiB [Escherichia coli K-12 (t	0.398	0.825	0.348	9.8e-13
TIGR_CMR|GSU_1606	148	GSU_1606 "ribose 5-phosphate i	0.378	0.790	0.341	1.9e-11
TIGR_CMR|CJE_1003	145	CJE_1003 "ribose 5-phosphate i	0.407	0.868	0.299	3.3e-11
TIGR_CMR|BA_5560	147	BA_5560 "sugar-phosphate isome	0.414	0.870	0.3	2.2e-09
TIGR_CMR|DET_0643	152	DET_0643 "ribose-5-phosphate i	0.411	0.835	0.325	1e-08
TIGR_CMR|DET_0677	152	DET_0677 "ribose-5-phosphate i	0.411	0.835	0.325	1e-08
TIGR_CMR|SPO_3180	149	SPO_3180 "ribose 5-phosphate i	0.411	0.852	0.25	1.7e-08
TIGR_CMR|APH_0642	143	APH_0642 "ribose 5-phosphate i	0.388	0.839	0.287	2.9e-08

TAIR|locus:2114890 DRT102 "DNA-DAMAGE-REPAIR/TOLERATION 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 200/291 (68%), Positives = 228/291 (78%)

Query:    12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVXXXXXXXXXXR 71
             PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGRRV          R
Sbjct:    11 PLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASSSSEV--R 68

Query:    72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
             GLV CGTGVGVA+FANK PGV+A TCL+  DA+N RSI+NCNVLA SG+ TS E+A+EI 
Sbjct:    69 GLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSPETALEIF 128

Query:   132 DTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKN---DKLXXXXXXXT--CSI 186
             D W+KTPFK+PCPASG +PW   IS F D S++EM  IGK+   D         T  C I
Sbjct:   129 DAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDETTASCVI 188

Query:   187 CCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSV 246
             CCL KNRE  PV+++PGGSMKI+RE+PTSAIVRFKAGSVEPAHHHTFGHDLVV++GKKSV
Sbjct:   189 CCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTFGHDLVVIKGKKSV 248

Query:   247 WNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDL 297
             WNL+K ER DL  GDYLFTPAGDVHRVKY+E+TEFFI WDG WD+F DEDL
Sbjct:   249 WNLSKKERADLVDGDYLFTPAGDVHRVKYHEDTEFFITWDGHWDIFLDEDL 299

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000719 "photoreactive repair" evidence=IGI

GO:0009411 "response to UV" evidence=IGI

TIGR_CMR|CHY_2558 CHY_2558 "ribose 5-phosphate isomerase B" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 46/129 (35%), Positives = 64/129 (49%)

Query:    13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIG-AEVGRRVXXXXXXXXXXR 71
             +KI  GAD  G  LK+ +  HL    I V D GT    S+   + G  V           
Sbjct:     1 MKIAIGADHAGFNLKEEIKKHLEKKGIAVIDKGTYSAESVDYPDFGEAVAEAVVQKEVDF 60

Query:    72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
             G+V CGTG+G++I ANK PG+ A  C     A + R  N+ NVLA+         A++I+
Sbjct:    61 GIVICGTGIGISIAANKVPGIRAALCSDTFSAHSAREHNDANVLALGARVVGVGLALDIV 120

Query:   132 DTWLKTPFK 140
             DT+L   F+
Sbjct:   121 DTFLGASFE 129

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

UNIPROTKB|P37351 rpiB [Escherichia coli K-12 (taxid:83333)]

 Score = 170 (64.9 bits), Expect = 9.8e-13, P = 9.8e-13
 Identities = 46/132 (34%), Positives = 63/132 (47%)

Query:    14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVXXXXXXXX 68
             KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V        
Sbjct:     3 KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG- 61

Query:    69 XXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
                G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct:    62 ---GILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAK 118

Query:   129 EILDTWLKTPFK 140
              I+D WL   ++
Sbjct:   119 MIVDAWLGAQYE 130

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA;IGI;IDA

GO:0019316 "D-allose catabolic process" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0008786 "allose 6-phosphate isomerase activity" evidence=IMP;IDA

TIGR_CMR|GSU_1606 GSU_1606 "ribose 5-phosphate isomerase B, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 159 (61.0 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 43/126 (34%), Positives = 60/126 (47%)

Query:    15 IIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVXXXXXXXXX 69
             I+ G+D  G ELK+A+   L       ED GT      DY   G +V RRV         
Sbjct:     2 IVVGSDHGGLELKEAVKRLLAERGETFEDCGTDNGNSVDYPDFGIKVARRVSNGEAG--- 58

Query:    70 XRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVE 129
              +G++ CGTG+G++I ANK P V A        A   +  NN N+L + G    +  A E
Sbjct:    59 -KGILLCGTGIGMSIVANKFPRVRAALATDAFMARMAKEHNNANILVLGGRVLEEAVARE 117

Query:   130 ILDTWL 135
             ++  WL
Sbjct:   118 MVIAWL 123

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0006098 "pentose-phosphate shunt" evidence=ISS

TIGR_CMR|CJE_1003 CJE_1003 "ribose 5-phosphate isomerase B" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 157 (60.3 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 38/127 (29%), Positives = 63/127 (49%)

Query:    14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVXXXXXXXXXXRGL 73
             KI   +D  G ELK+ +   L+  NI   DLGT+   S        +           G+
Sbjct:     5 KIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCDYPDYAHLLAEKINKRSF-GI 63

Query:    74 VACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDT 133
             + CG+G+G++I AN++  +    C     A   R  N+ NVLA+ G     E A++I++ 
Sbjct:    64 LICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDANVLALGGRLIGVELAIDIIEK 123

Query:   134 WLKTPFK 140
             +++TPF+
Sbjct:   124 FIQTPFE 130

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

TIGR_CMR|BA_5560 BA_5560 "sugar-phosphate isomerase, RpiB/LacA/LacB family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 141 (54.7 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 39/130 (30%), Positives = 60/130 (46%)

Query:    13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-DYYSIG-AEVGRRVXXXXXXXXXX 70
             +K++  +D  G  ++  LVS L  LNI+  DLG   +  S+   +               
Sbjct:     1 MKVVIASDHGGMNIRKELVSLLEELNIEYIDLGCECEAGSVDYPDFAFPAAEMVANGEVD 60

Query:    71 RGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEI 130
             RG++ CGTG+G++I ANK  G+          A  TR  N+ N+LA+         A +I
Sbjct:    61 RGILVCGTGIGMSIAANKVNGIRCALVHDTFSARATREHNDTNMLAMGERVIGAGLARDI 120

Query:   131 LDTWLKTPFK 140
                WL T F+
Sbjct:   121 AKIWLTTEFE 130

GO:0016052 "carbohydrate catabolic process" evidence=ISS

GO:0016861 "intramolecular oxidoreductase activity, interconverting aldoses and ketoses" evidence=ISS

TIGR_CMR|DET_0643 DET_0643 "ribose-5-phosphate isomerase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 135 (52.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 42/129 (32%), Positives = 54/129 (41%)

Query:    13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIG--AEVGRRVXXXXXXXXXX 70
             + +  GAD  G  LK  L+  L  L I V DLG   Y S     +    V          
Sbjct:     4 ISVAIGADHGGYGLKTDLLPFLNQLGIKVLDLGACTYDSADDYPDFALAVARKVACGQTD 63

Query:    71 RGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEI 130
             RG++ CG+GVG  I ANK  GV A  C     A      ++ NVL +       E A EI
Sbjct:    64 RGIIICGSGVGACITANKIKGVRAGLCHDVYSAHQGVEHDDMNVLCLGARVIGIEVAKEI 123

Query:   131 LDTWLKTPF 139
             +  +L   F
Sbjct:   124 ITAFLNARF 132

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

TIGR_CMR|DET_0677 DET_0677 "ribose-5-phosphate isomerase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 135 (52.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 42/129 (32%), Positives = 54/129 (41%)

Query:    13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIG--AEVGRRVXXXXXXXXXX 70
             + +  GAD  G  LK  L+  L  L I V DLG   Y S     +    V          
Sbjct:     4 ISVAIGADHGGYGLKTDLLPFLNQLGIKVLDLGACTYDSADDYPDFALAVARKVACGQTD 63

Query:    71 RGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEI 130
             RG++ CG+GVG  I ANK  GV A  C     A      ++ NVL +       E A EI
Sbjct:    64 RGIIICGSGVGACITANKIKGVRAGLCHDVYSAHQGVEHDDMNVLCLGARVIGIEVAKEI 123

Query:   131 LDTWLKTPF 139
             +  +L   F
Sbjct:   124 ITAFLNARF 132

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

TIGR_CMR|SPO_3180 SPO_3180 "ribose 5-phosphate isomerase B" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 133 (51.9 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 32/128 (25%), Positives = 58/128 (45%)

Query:    14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIG-AEVGRRVXXXXXXXXXXRG 72
             +I+  +D    +L+ A+  H+ +   +V D+G     S    + GR             G
Sbjct:     6 RIVLSSDHAAIDLRRAVADHISAQGWEVVDIGPQTTESTHYPKHGRAAAERVASGDCSLG 65

Query:    73 LVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILD 132
             ++ CGTG G+ + ANK  G+    C     A   R  N+ N+L++      +  A++I+D
Sbjct:    66 IILCGTGQGIMMAANKVAGIRCGVCFDTFSARMIRMHNDANMLSLGARVVGEGLALDIVD 125

Query:   133 TWLKTPFK 140
              +L   F+
Sbjct:   126 AFLSAEFE 133

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

TIGR_CMR|APH_0642 APH_0642 "ribose 5-phosphate isomerase B" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 131 (51.2 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 38/132 (28%), Positives = 62/132 (46%)

Query:    14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVXXXXXXX 67
             ++   +D  G EL+  L ++LR L  +V D G        DY     +V R V       
Sbjct:     4 RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDTSF-- 61

Query:    68 XXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
                 G++ CGTG+G++I AN++  + A  C +   A  +R  N+ NVL         ++A
Sbjct:    62 ----GVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTA 117

Query:   128 VEILDTWLKTPF 139
               +L T++ T F
Sbjct:   118 QSVLYTFMTTAF 129

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05212	DR102_ARATH	No assigned EC number	0.6948	0.9741	0.9709	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031130001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (301 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021387001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (227 aa)	•								0.526
	GSVIVG00032161001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (428 aa)	•								0.523
	GSVIVG00027807001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (471 aa)	•								0.506
	GSVIVG00026404001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (620 aa)	•					•	•		0.485
	GSVIVG00038435001	SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (620 aa)	•					•	•		0.484
	GSVIVG00007751001	SubName- Full=Chromosome undetermined scaffold_200, whole genome shotgun sequence; (518 aa)	•		•						0.479
	GSVIVG00015058001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (516 aa)	•								0.419

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
pfam02502	140	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	4e-41
COG0698	151	COG0698, RpiB, Ribose 5-phosphate isomerase RpiB [	3e-30
PRK05571	148	PRK05571, PRK05571, ribose-5-phosphate isomerase B	1e-28
PTZ00215	151	PTZ00215, PTZ00215, ribose 5-phosphate isomerase;	1e-22
TIGR00689	144	TIGR00689, rpiB_lacA_lacB, sugar-phosphate isomera	1e-21
TIGR01120	143	TIGR01120, rpiB, ribose 5-phosphate isomerase B	9e-19
PRK08622	171	PRK08622, PRK08622, galactose-6-phosphate isomeras	4e-18
TIGR02133	148	TIGR02133, RPI_actino, ribose 5-phosphate isomeras	5e-15
TIGR01119	171	TIGR01119, lacB, galactose-6-phosphate isomerase,	2e-12
PRK12615	171	PRK12615, PRK12615, galactose-6-phosphate isomeras	4e-09
pfam07883	70	pfam07883, Cupin_2, Cupin domain	4e-07
PRK08621	142	PRK08621, PRK08621, galactose-6-phosphate isomeras	7e-07
COG1917	131	COG1917, COG1917, Uncharacterized conserved protei	3e-06
COG0662	127	COG0662, {ManC}, Mannose-6-phosphate isomerase [Ca	5e-06
PRK09273	211	PRK09273, PRK09273, hypothetical protein; Provisio	4e-05
pfam12973	91	pfam12973, Cupin_7, ChrR Cupin-like domain	5e-05

>gnl|CDD|202262 pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase

 Score =  139 bits (353), Expect = 4e-41
 Identities = 50/132 (37%), Positives = 72/132 (54%), Gaps = 9/132 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDT 68
           KI  G+D  G ELK+A+  +L++   +V D+GT      DY     +V   V+S ++   
Sbjct: 1   KIAIGSDHAGFELKEAIKEYLKAKGYEVIDVGTYSGESVDYPDYAIKVAEAVASGEAD-- 58

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
             RG++ CGTG+G++I ANK PG+ A  C  P  A   R  NN NVL +       E A 
Sbjct: 59  --RGILICGTGIGMSIAANKVPGIRAALCHDPFSAELAREHNNANVLCLGARVIGPELAK 116

Query: 129 EILDTWLKTPFK 140
           EI+D +L T F+
Sbjct: 117 EIVDAFLATEFE 128

This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Length = 140

>gnl|CDD|223770 COG0698, RpiB, Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]

 Score =  111 bits (279), Expect = 3e-30
 Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 10/133 (7%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT------SDYYSIGAEVGRRVSSSDSSD 67
           KI  G+D  G ELK+ ++ HL+S   +V D GT       DY     +V   V + ++  
Sbjct: 2   KIAIGSDHAGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEAD- 60

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G++ CGTG+G++I ANK PG+ A     P  A   R  NN NVL +       E A
Sbjct: 61  ---LGILICGTGIGMSIAANKVPGIRAALVSDPTSAKLAREHNNANVLCLGARIIGPELA 117

Query: 128 VEILDTWLKTPFK 140
            +I+D +L+T FK
Sbjct: 118 EDIVDAFLETEFK 130

Length = 151

>gnl|CDD|235509 PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional

 Score =  107 bits (269), Expect = 1e-28
 Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 10/132 (7%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSD 67
           KI  G+D  G ELK+ ++ HL  L  +V DLG        DY     +V   V +     
Sbjct: 2   KIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVA----G 57

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
              RG++ CGTG+G++I ANK  G+ A  C     A   R  NN NVLA+       E A
Sbjct: 58  EADRGILICGTGIGMSIAANKVKGIRAALCHDTYSAHLAREHNNANVLALGARVIGPELA 117

Query: 128 VEILDTWLKTPF 139
            +I+D +L T F
Sbjct: 118 KDIVDAFLATEF 129

Length = 148

>gnl|CDD|185516 PTZ00215, PTZ00215, ribose 5-phosphate isomerase; Provisional

 Score = 91.2 bits (227), Expect = 1e-22
 Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 11/137 (8%)

Query: 12  PLKIIAGADSFGAELKDALVSHLR--SLNIDVEDLGTS-----DYYSIGAEVGRRVSSSD 64
             K+  G+D  G +LK+ ++ +++       +ED+GT      DY     +V   V   +
Sbjct: 2   QKKVAIGSDHAGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGE 61

Query: 65  SSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
           +      G++ CG+G+G++I ANK  G+    C     A  +R  NN NVLA  G +T  
Sbjct: 62  A----DTGILVCGSGIGISIAANKVKGIRCALCHDHYTARMSRQHNNANVLAFGGRTTGI 117

Query: 125 ESAVEILDTWLKTPFKA 141
           E A EI+DT+L TPF+ 
Sbjct: 118 EVAKEIIDTFLSTPFEG 134

Length = 151

>gnl|CDD|129772 TIGR00689, rpiB_lacA_lacB, sugar-phosphate isomerase, RpiB/LacA/LacB family

 Score = 88.2 bits (219), Expect = 1e-21
 Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 9/132 (6%)

Query: 15  IIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSDTT 69
           I  G+D  G ELK  ++ HL+    +V D GT      DY      V  +V + + S   
Sbjct: 1   IAIGSDHAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVS--- 57

Query: 70  TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVE 129
             G++ CGTG+G++I ANK  G+ A  C+    A   R  N+ NVL +       E A+ 
Sbjct: 58  -LGILICGTGIGMSIAANKFKGIRAALCVDEYTAALARQHNDANVLCLGSRVVGVELALS 116

Query: 130 ILDTWLKTPFKA 141
           I+D +L T F+ 
Sbjct: 117 IVDAFLTTQFEG 128

Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to complete the pentose phosphate pathway. Length = 144

>gnl|CDD|130190 TIGR01120, rpiB, ribose 5-phosphate isomerase B

 Score = 80.7 bits (199), Expect = 9e-19
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 9/132 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSDT 68
           KI  G+D  G  LK+ + + L    + V D GT     +DY     +V   V+  +    
Sbjct: 1   KIAIGSDHAGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVD-- 58

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTG+G++I ANK  G+ A  C  P  A  +R  N+ NVL +       E A 
Sbjct: 59  --GGILICGTGIGMSIAANKFAGIRAALCSEPYMAQMSRLHNDANVLCLGERVVGLELAK 116

Query: 129 EILDTWLKTPFK 140
            I+D WL T F+
Sbjct: 117 SIVDAWLGTQFE 128

Involved in the non-oxidative branch of the pentose phospate pathway [Energy metabolism, Pentose phosphate pathway]. Length = 143

>gnl|CDD|181506 PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed

 Score = 79.7 bits (197), Expect = 4e-18
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 18/147 (12%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSI-GAEVGRRVSSSDSSD 67
           +KI  G D    + K A+  +L+S   +V D+GT D+    Y I G +VG  V+S ++  
Sbjct: 1   MKIAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEAD- 59

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+  CGTGVG++   NK PG+ +        AL  +   N NV+   G  T +   
Sbjct: 60  ---LGVCICGTGVGISNAVNKVPGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLM 116

Query: 128 VEILDTWLKTPFKAPCPASGFKPWEEN 154
            +I+D ++            +KP EEN
Sbjct: 117 CDIIDAFINAE---------YKPTEEN 134

Length = 171

>gnl|CDD|211716 TIGR02133, RPI_actino, ribose 5-phosphate isomerase

 Score = 70.9 bits (174), Expect = 5e-15
 Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLG------TSDYYSIGAEVGRRVSSSDSS 66
           ++++ G D  G E K+AL   L     +V D+G        DY          V+     
Sbjct: 1   MRVVLGHDHAGFEYKEALWLDLAGHEPEVCDVGVYDADDDDDYPCFCIAAAEAVAR---- 56

Query: 67  DTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
           D    G+V  G+G G AI ANK  G  A      A A   R  NN NV+         E 
Sbjct: 57  DAADLGIVIGGSGNGEAIAANKVKGARAALAWDTASAGRARLHNNANVVGAGMRMHGLEE 116

Query: 127 AVEILDTWLKTPFKA 141
           A  ++  +L   F A
Sbjct: 117 AFRLVFEFLPFEFDA 131

This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family. Length = 148

>gnl|CDD|130189 TIGR01119, lacB, galactose-6-phosphate isomerase, LacB subunit

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 46/147 (31%), Positives = 68/147 (46%), Gaps = 18/147 (12%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSI-GAEVGRRVSSSDSSD 67
           +KI  G D    ++K  +   L+S   +V D+GT D+    Y I G +VG  V S ++  
Sbjct: 1   MKIAIGCDHIVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEAD- 59

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+  CGTGVG+    NK PGV +        AL  +   N NV+   G    K   
Sbjct: 60  ---LGVCICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNANVIGFGGAIIGKLLM 116

Query: 128 VEILDTWLKTPFKAPCPASGFKPWEEN 154
            +I+D ++K         + +KP EEN
Sbjct: 117 FDIIDAFIK---------AEYKPTEEN 134

This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 171

>gnl|CDD|171610 PRK12615, PRK12615, galactose-6-phosphate isomerase subunit LacB; Reviewed

 Score = 54.6 bits (131), Expect = 4e-09
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV-GRRVSSSDSSDTTTR 71
           +KI  G D      K A+   L+S   DV D GT D+      + G++V  +  +     
Sbjct: 1   MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADL 60

Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G+  CGTGVG+    NK PG+ +        AL  +   N NV+   G  T +    +I+
Sbjct: 61  GVCICGTGVGINNAVNKVPGIRSALVRDMTTALYAKEELNANVIGFGGKITGELLMCDII 120

Query: 132 DTWLKTPFK 140
           D ++K  +K
Sbjct: 121 DAFIKAEYK 129

Length = 171

>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
            +V    G   P H H       VL+G+  +     GE   L  GD ++ PAG  HR +
Sbjct: 1   GLVTLPPGESSPPHRHPGEEFFYVLEGEGELT--VDGEEVVLKAGDSVYFPAGVPHRFR 57

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). Length = 70

>gnl|CDD|181505 PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDL---GTSDYYSIGAEVGRRVSSSDSSDTT 69
           + II GAD  G ELK+ +  +L     +V D+   G  D+      V + V+ S+ +   
Sbjct: 1   MAIIIGADKAGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDN--- 57

Query: 70  TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVE 129
             G+V    G G  + A K  G+ A        A  TR  NN  ++ +         A  
Sbjct: 58  -LGIVIDAYGAGSFMVATKIKGMVAAEVSDERSAYMTRGHNNARMITMGSEIVGDGLAKN 116

Query: 130 ILDTWLKT 137
           I+  +++ 
Sbjct: 117 IIKGFVEG 124

Length = 142

>gnl|CDD|224829 COG1917, COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 218 VRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           V F+ G+V P H H  G   + VL+G+ +V    +GE+ +L  GD +  P G VH +K
Sbjct: 48  VTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQ--LEGEKKELKAGDVIIIPPGVVHGLK 103

Length = 131

>gnl|CDD|223734 COG0662, {ManC}, Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

 Score = 44.7 bits (106), Expect = 5e-06
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 188 CLVKNRELNPVEMIPGGSMKIIRESPTS----AIVRFKAGSVEPAHHHTFGHDLVVLQGK 243
              +    +  E  P GS  ++           +V+         HHH   H   VL+G 
Sbjct: 9   NFSERDGSHRAEFRPWGSYTVLDAGDRYSIARILVKPGEEISLHHHHHRDEH-WYVLEGT 67

Query: 244 KSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET--EFFIKWDGRWDMFFDEDLEAA 300
             V     GE  ++  GD ++ PAG  HRV+   +            +    D      
Sbjct: 68  GKVTI--GGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPYLGEDDIVRTED 124

Length = 127

>gnl|CDD|181746 PRK09273, PRK09273, hypothetical protein; Provisional

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 76  CGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLA 116
           CGTG G  +  N  PGV    C+ P DA     INN N L+
Sbjct: 71  CGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQINNGNALS 111

Length = 211

>gnl|CDD|193446 pfam12973, Cupin_7, ChrR Cupin-like domain

 Score = 41.0 bits (97), Expect = 5e-05
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 213 PTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR 272
             +++VR+  GS  P H H  G +++VL+G   V+     E  D   G YL  P G  H 
Sbjct: 24  RATSLVRYAPGSRFPPHRHPGGEEILVLEG---VF---SDEHGDYPAGSYLRNPPGSSHA 77

Query: 273 VKYYEETEFFIK 284
               E    F+K
Sbjct: 78  PFSEEGCTIFVK 89

Members of this family are part of the cupin superfamily. This family includes the transcriptional activator ChrR. Length = 91

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
TIGR01118	141	lacA galactose-6-phosphate isomerase, LacA subunit	100.0
PRK08621	142	galactose-6-phosphate isomerase subunit LacA; Revi	100.0
PRK12613	141	galactose-6-phosphate isomerase subunit LacA; Prov	100.0
PRK05571	148	ribose-5-phosphate isomerase B; Provisional	100.0
PRK08622	171	galactose-6-phosphate isomerase subunit LacB; Revi	100.0
TIGR01119	171	lacB galactose-6-phosphate isomerase, LacB subunit	100.0
PTZ00215	151	ribose 5-phosphate isomerase; Provisional	100.0
TIGR01120	143	rpiB ribose 5-phosphate isomerase B. Involved in t	100.0
PRK12615	171	galactose-6-phosphate isomerase subunit LacB; Revi	100.0
TIGR02133	148	RPI_actino ribose 5-phosphate isomerase. This fami	100.0
COG0698	151	RpiB Ribose 5-phosphate isomerase RpiB [Carbohydra	100.0
TIGR00689	144	rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/La	100.0
PF02502	140	LacAB_rpiB: Ribose/Galactose Isomerase; InterPro:	100.0
PRK09273	211	hypothetical protein; Provisional	100.0
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.42
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	99.23
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.22
COG1917	131	Uncharacterized conserved protein, contains double	99.2
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.19
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.09
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	99.07
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.04
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	99.02
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.98
smart00835	146	Cupin_1 Cupin. This family represents the conserve	98.95
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	98.93
PRK11171	266	hypothetical protein; Provisional	98.91
PRK11171	266	hypothetical protein; Provisional	98.85
COG3837	161	Uncharacterized conserved protein, contains double	98.82
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.81
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.78
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	98.77
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.74
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.74
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.72
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.66
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.65
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	98.61
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.55
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.51
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	98.39
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	98.25
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	98.16
PRK13501	290	transcriptional activator RhaR; Provisional	98.13
PRK13500	312	transcriptional activator RhaR; Provisional	98.04
PRK13502	282	transcriptional activator RhaR; Provisional	98.04
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	98.01
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.0
PLN00212	493	glutelin; Provisional	97.98
COG3257	264	GlxB Uncharacterized protein, possibly involved in	97.96
PRK13503	278	transcriptional activator RhaS; Provisional	97.91
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	97.9
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.82
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	97.77
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	97.75
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	97.75
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	97.51
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.46
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.45
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	97.42
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	97.42
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.37
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	97.33
PLN00212	493	glutelin; Provisional	97.17
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	96.95
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	96.91
COG1791	181	Uncharacterized conserved protein, contains double	96.87
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	96.78
COG3257	264	GlxB Uncharacterized protein, possibly involved in	96.66
COG3806	216	ChrR Transcriptional activator [Transcription]	96.58
KOG2107	179	consensus Uncharacterized conserved protein, conta	96.42
COG4297	163	Uncharacterized protein containing double-stranded	96.38
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	96.3
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	95.99
COG3450	116	Predicted enzyme of the cupin superfamily [General	95.63
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	95.51
COG3822	225	ABC-type sugar transport system, auxiliary compone	95.51
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	95.42
PF07385	225	DUF1498: Protein of unknown function (DUF1498); In	95.3
PRK02261	137	methylaspartate mutase subunit S; Provisional	94.98
PF12852	186	Cupin_6: Cupin	94.84
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	94.62
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	94.55
COG1741	276	Pirin-related protein [General function prediction	94.37
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	94.36
TIGR01501	134	MthylAspMutase methylaspartate mutase, S subunit.	93.96
PF14272	115	Gly_rich_SFCGS: Glycine-rich SFCGS	93.85
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	93.28
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	92.98
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	92.85
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	92.85
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	92.83
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	92.05
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	91.39
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	91.29
TIGR03577	115	EF_0830 conserved hypothetical protein EF_0830/AHA	91.27
PF14525	172	AraC_binding_2: AraC-binding-like domain	91.17
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	90.41
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	90.09
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	89.99
PRK12335	287	tellurite resistance protein TehB; Provisional	89.92
PHA00672	152	hypothetical protein	89.63
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	89.34
PF07847	200	DUF1637: Protein of unknown function (DUF1637); In	88.64
PRK10579	94	hypothetical protein; Provisional	88.55
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	88.42
cd02071	122	MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin	87.84
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	87.77
cd02072	128	Glm_B12_BD B12 binding domain of glutamate mutase	87.37
COG2850	383	Uncharacterized conserved protein [Function unknow	87.24
PF02302	90	PTS_IIB: PTS system, Lactose/Cellobiose specific I	86.77
PRK15131	389	mannose-6-phosphate isomerase; Provisional	86.54
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	86.42
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	86.06
cd05564	96	PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic	84.77
PLN02288	394	mannose-6-phosphate isomerase	84.58
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	84.2
PLN02658	435	homogentisate 1,2-dioxygenase	84.12
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	83.71
PRK09590	104	celB cellobiose phosphotransferase system IIB comp	82.87
PF03698	80	UPF0180: Uncharacterised protein family (UPF0180);	82.81
COG0127	194	Xanthosine triphosphate pyrophosphatase [Nucleotid	82.09
TIGR02667	163	moaB_proteo molybdenum cofactor biosynthesis prote	82.0
cd05568	85	PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosph	81.35
PF02878	137	PGM_PMM_I: Phosphoglucomutase/phosphomannomutase,	81.21
cd05566	89	PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB	81.16
PRK10310	94	PTS system galactitol-specific transporter subunit	81.02
PRK03094	80	hypothetical protein; Provisional	80.63
cd00886	152	MogA_MoaB MogA_MoaB family. Members of this family	80.18

>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit

Probab=100.00  E-value=1.3e-56  Score=377.52  Aligned_cols=136  Identities=24%  Similarity=0.342  Sum_probs=128.7

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC---CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT---SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN   89 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~---~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~   89 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|+   .||||+|.+||+.|.+    ++++|||||||||+||||+|||+
T Consensus         1 MkI~IgsDh~G~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~----~e~~~GIliCGtGiG~siaANK~   76 (141)
T TIGR01118         1 MAIIIGSDLAGKRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQK----DEQNLGIVIDAYGAGSFMVATKI   76 (141)
T ss_pred             CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHc----CCCceEEEEcCCCHhHhhhhhcC
Confidence            8999999999999999999999999999999998   3799999999999998    99999999999999999999999


Q ss_pred             CceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhh
Q 021654           90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENIS  156 (309)
Q Consensus        90 ~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~  156 (309)
                      ||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++|    +++++.+.|.
T Consensus        77 ~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~~g~~~a~~iv~~fL~t~f~gg----rh~~Rv~~i~  139 (141)
T TIGR01118        77 KGMIAAEVSDERSAYMTRGHNNARMITVGAEIVGDELAKNIVKAFVEGKYDGG----RHQIRVDMLN  139 (141)
T ss_pred             CCeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCCc----cHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999963    5555555444

This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.

>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed

Probab=100.00  E-value=2.2e-56  Score=376.57  Aligned_cols=136  Identities=22%  Similarity=0.317  Sum_probs=129.0

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN   89 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~---~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~   89 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|++   |||++|.+||++|.+    +++++||||||||+||||+||||
T Consensus         1 mkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGTGiG~siaANK~   76 (142)
T PRK08621          1 MAIIIGADKAGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNK----SEDNLGIVIDAYGAGSFMVATKI   76 (142)
T ss_pred             CEEEEEeCcchHHHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHc----CCCceEEEEcCCChhhhhhhhcC
Confidence            89999999999999999999999999999999983   699999999999998    99999999999999999999999


Q ss_pred             CceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhh
Q 021654           90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENIS  156 (309)
Q Consensus        90 ~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~  156 (309)
                      ||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    +++.++.+.|.
T Consensus        77 ~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~iv~~fL~t~f~g----grh~~Rv~ki~  139 (142)
T PRK08621         77 KGMVAAEVSDERSAYMTRGHNNARMITMGSEIVGDGLAKNIIKGFVEGKYDG----GRHQIRVDMLN  139 (142)
T ss_pred             CCeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999996    45665555554

>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional

Probab=100.00  E-value=2.4e-56  Score=375.91  Aligned_cols=136  Identities=23%  Similarity=0.324  Sum_probs=128.7

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCC
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNP   90 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~   90 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|+.  ||||+|.+||++|.+    ++++|||+|||||+||||+|||+|
T Consensus         1 MkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~----~e~~~GIliCGtGiG~siaANKv~   76 (141)
T PRK12613          1 MAIILGADAHGNALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNE----AEGRLGIMVDAYGAGPFMVATKLK   76 (141)
T ss_pred             CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHc----CCCceEEEEcCCCHhHhhhhhcCC
Confidence            89999999999999999999999999999999984  799999999999998    999999999999999999999999


Q ss_pred             ceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhh
Q 021654           91 GVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENIS  156 (309)
Q Consensus        91 giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~  156 (309)
                      |||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++|    +++++.+.|.
T Consensus        77 GIRaA~~~d~~~A~~ar~hNnaNVl~lG~r~ig~~~a~~iv~~fL~t~f~gg----rh~~Rv~~i~  138 (141)
T PRK12613         77 GMVAAEVSDERSAYMTRGHNNARMITMGAEIVGPELAKNIAKGFVTGPYDGG----RHQIRVDMLN  138 (141)
T ss_pred             CeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCCc----cHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999974    5555555444

>PRK05571 ribose-5-phosphate isomerase B; Provisional

Probab=100.00  E-value=8.1e-56  Score=376.33  Aligned_cols=139  Identities=35%  Similarity=0.550  Sum_probs=130.9

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC---C---CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhh
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT---S---DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFA   86 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~---~---~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaa   86 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|+   .   +||++|.+||++|.+    |+++|||||||||+||||+|
T Consensus         1 mkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGtGiG~siaA   76 (148)
T PRK05571          1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVA----GEADRGILICGTGIGMSIAA   76 (148)
T ss_pred             CEEEEEeCCchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHH
Confidence            8999999999999999999999999999999998   2   699999999999998    99999999999999999999


Q ss_pred             cCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhh
Q 021654           87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFF  159 (309)
Q Consensus        87 NK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl  159 (309)
                      |||||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++    ++++++.+.|..+.
T Consensus        77 NK~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~iv~~fl~t~F~g----grh~~Rv~ki~~~e  145 (148)
T PRK05571         77 NKVKGIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEFEG----GRHQRRIDKIDEYE  145 (148)
T ss_pred             hcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----CcHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999996    46666666666543

>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed

Probab=100.00  E-value=1.6e-55  Score=380.74  Aligned_cols=143  Identities=29%  Similarity=0.425  Sum_probs=134.2

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN   87 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|++     |||++|.+||++|.+    ++++|||||||||+||||+||
T Consensus         1 MkI~IgsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN   76 (171)
T PRK08622          1 MKIAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVAS----GEADLGVCICGTGVGISNAVN   76 (171)
T ss_pred             CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCcEEEEEcCCcHHHHHHHh
Confidence            89999999999999999999999999999999984     699999999999998    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhc
Q 021654           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKS  162 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~s  162 (309)
                      ||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++   .+++.++++.|..+.+..
T Consensus        77 Kv~GIRAA~~~d~~sA~~aR~hNnaNVL~lG~r~ig~~~a~~iv~~fL~t~F~g---ggrh~~Rv~ki~~~e~~~  148 (171)
T PRK08622         77 KVPGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDIIDAFINAEYKP---TEENKKLIEKIDHLEKPN  148 (171)
T ss_pred             cCCCeEEEEeCCHHHHHHHHHhcCCcEEEEChhhcCHHHHHHHHHHHHcCCCCC---CChHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999999999999995   357777777777655433

>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit

Probab=100.00  E-value=2.4e-55  Score=380.07  Aligned_cols=144  Identities=29%  Similarity=0.422  Sum_probs=134.7

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN   87 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|++     |||++|.+||++|.+    ++++|||||||||+||||+||
T Consensus         1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGTGiG~siaAN   76 (171)
T TIGR01119         1 MKIAIGCDHIVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVS----GEADLGVCICGTGVGINNAVN   76 (171)
T ss_pred             CEEEEEeCCchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHHh
Confidence            89999999999999999999999999999999984     599999999999998    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhcc
Q 021654           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSM  163 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~sl  163 (309)
                      ||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++   .+++.+++..|..+.....
T Consensus        77 Kv~GIRAAl~~d~~sA~~ar~hNnaNVL~lGarvig~e~a~~Iv~~fL~t~Feg---ggrh~~Rv~ki~~~e~~~~  149 (171)
T TIGR01119        77 KVPGVRSALVRDMTSALYAKEELNANVIGFGGAIIGKLLMFDIIDAFIKAEYKP---TEENKKLIAKIKHLETHNA  149 (171)
T ss_pred             cCCCeEEEEeCCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC---CCcHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999999999995   3577777777776654333

This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.

>PTZ00215 ribose 5-phosphate isomerase; Provisional

Probab=100.00  E-value=3e-55  Score=373.73  Aligned_cols=141  Identities=33%  Similarity=0.539  Sum_probs=132.6

Q ss_pred             CCcEEEEEeCcccHHHHHHHHHHHHh--CCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhh
Q 021654           11 HPLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVA   83 (309)
Q Consensus        11 ~~mki~i~~D~~g~~lk~~l~~~l~~--~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~   83 (309)
                      +.|||+|||||+||+||+.|++||++  +||||+|+|++     |||++|.+||++|.+    ++++|||+|||||+||+
T Consensus         1 ~~mkI~igsDhaG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~----~~~~~GIliCGtGiG~s   76 (151)
T PTZ00215          1 MQKKVAIGSDHAGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLK----GEADTGILVCGSGIGIS   76 (151)
T ss_pred             CCcEEEEEeCCchHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhc----CCCcEEEEEcCCcHHHH
Confidence            46899999999999999999999999  99999999984     599999999999998    99999999999999999


Q ss_pred             hhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhh
Q 021654           84 IFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFF  159 (309)
Q Consensus        84 iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl  159 (309)
                      |+||||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    +++.++.+.|..+.
T Consensus        77 iaANK~~GIRAa~~~d~~~A~~ar~hNnaNVL~lGar~ig~~~a~~iv~~fL~t~F~g----grh~~Rv~~i~~~e  148 (151)
T PTZ00215         77 IAANKVKGIRCALCHDHYTARMSRQHNNANVLAFGGRTTGIEVAKEIIDTFLSTPFEG----GRHTERIDKISAIE  148 (151)
T ss_pred             HHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999996    46666666666554

>TIGR01120 rpiB ribose 5-phosphate isomerase B

Probab=100.00  E-value=1.5e-55  Score=372.63  Aligned_cols=128  Identities=34%  Similarity=0.490  Sum_probs=123.8

Q ss_pred             EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcC
Q 021654           14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANK   88 (309)
Q Consensus        14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK   88 (309)
                      ||+|||||+||+||+.|++||+++||||+|+|++     |||++|.+||++|.+    ++++|||||||||+||||+|||
T Consensus         1 kI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGtGiG~siaANK   76 (143)
T TIGR01120         1 KIAIGSDHAGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAG----GEVDGGILICGTGIGMSIAANK   76 (143)
T ss_pred             CEEEEeCcchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHC----CCCceEEEEcCCcHHHHHHHhc
Confidence            6999999999999999999999999999999984     699999999999998    9999999999999999999999


Q ss_pred             CCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCC
Q 021654           89 NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPA  145 (309)
Q Consensus        89 ~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~  145 (309)
                      +||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++||++
T Consensus        77 ~~GIraa~~~d~~~A~~ar~hNnaNvl~lG~r~~g~~~a~~iv~~fl~t~f~ggrh~  133 (143)
T TIGR01120        77 FAGIRAALCSEPYMAQMSRLHNDANVLCLGERVVGLELAKSIVDAWLGTQFEGGRHQ  133 (143)
T ss_pred             CCCeEEEEECCHHHHHHHHHhcCCcEEEECcceeCHHHHHHHHHHHHcCCCCCCccH
Confidence            999999999999999999999999999999999999999999999999999975544

Involved in the non-oxidative branch of the pentose phospate pathway.

>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed

Probab=100.00  E-value=5.1e-55  Score=377.97  Aligned_cols=140  Identities=30%  Similarity=0.418  Sum_probs=132.6

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN   87 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|++     |||++|.+||++|.+    ++++|||||||||+||||+||
T Consensus         1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN   76 (171)
T PRK12615          1 MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVN----GQADLGVCICGTGVGINNAVN   76 (171)
T ss_pred             CEEEEEeCchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHHh
Confidence            89999999999999999999999999999999985     699999999999998    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhh
Q 021654           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFF  159 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl  159 (309)
                      ||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++   .+++.++++.|..+.
T Consensus        77 K~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~Iv~~fL~t~F~g---ggrh~~Rv~ki~~~e  145 (171)
T PRK12615         77 KVPGIRSALVRDMTTALYAKEELNANVIGFGGKITGELLMCDIIDAFIKAEYKE---TEENKKLIAKIAHLE  145 (171)
T ss_pred             cCCCeEEEEeCCHHHHHHHHHhcCCcEEEEChhhcCHHHHHHHHHHHHcCCCCC---CCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999995   257777777777654

>TIGR02133 RPI_actino ribose 5-phosphate isomerase

Probab=100.00  E-value=2.1e-54  Score=368.13  Aligned_cols=139  Identities=30%  Similarity=0.355  Sum_probs=130.7

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhh
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFA   86 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaa   86 (309)
                      |||+|||||+||+||+.|++||+++||+|+|+|++      +||++|.+||++|.+    +++++||||||||+||||+|
T Consensus         1 MkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGtGiG~siaA   76 (148)
T TIGR02133         1 MRVVLGHDHAGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVAR----DAADLGIVIGGSGNGEAIAA   76 (148)
T ss_pred             CEEEEEeCchhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhc----CCCceEEEEcCCChhheeee
Confidence            89999999999999999999999999999999982      599999999999998    99999999999999999999


Q ss_pred             cCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhh
Q 021654           87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCF  158 (309)
Q Consensus        87 NK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~f  158 (309)
                      ||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++   .+++.++.+.|..+
T Consensus        77 NK~~GiRAA~~~d~~sA~~ar~hNnaNVl~lG~r~ig~~~a~~iv~~fl~t~f~~---ggrh~~Rv~~i~~~  145 (148)
T TIGR02133        77 NKVKGARAALAWDTASAGRARLHNNANVVGAGMRMHGLEEAFRLVFEFLGFEFDA---RSRHARRIDSISEY  145 (148)
T ss_pred             cccCCeEEEEECCHHHHHHHHHHcCCcEEEECCcccCHHHHHHHHHHHHCCCCCC---CCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999995   25666666666554

This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.

>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.1e-54  Score=367.57  Aligned_cols=140  Identities=34%  Similarity=0.525  Sum_probs=130.2

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhh
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFA   86 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaa   86 (309)
                      |||+|||||+|++||+.|++||+++||+|+|+|++      +||+|+.+||+.|.+    ++.||||+|||||+||||+|
T Consensus         1 MkIaig~Dhag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~----~~~d~GIliCGTGiG~~iaA   76 (151)
T COG0698           1 MKIAIGSDHAGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLN----GEADLGILICGTGIGMSIAA   76 (151)
T ss_pred             CcEEEEcCcccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHc----CCCCeeEEEecCChhHHHHh
Confidence            89999999999999999999999999999999985      599999999999998    89999999999999999999


Q ss_pred             cCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCC-CCCCCCCCCChhhhhhhhhhh
Q 021654           87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPF-KAPCPASGFKPWEENISCFFD  160 (309)
Q Consensus        87 NK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f-~~~~p~~~~~~~~~~I~~fl~  160 (309)
                      ||+||||||+|+|+++|+|+|+|||+||||||+|++|+++|+.|+|+||+++| ++|||+.+    .+-|.++.+
T Consensus        77 NKv~GiraAl~~D~~sA~~ar~hNnaNvl~~G~riig~~lA~~ivd~fl~~~f~~ggrh~~R----v~~i~~~~~  147 (151)
T COG0698          77 NKVPGIRAALVSDPTSAKLAREHNNANVLCLGARIIGPELAEDIVDAFLETEFKEGGRHQRR----VDKIAEYER  147 (151)
T ss_pred             hccCCeEEEEecCHHHHHHHHhcCCCcEEEechhhccHHHHHHHHHHHHhccccCCCchHHH----HHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999 77766654    444444443

>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family

Probab=100.00  E-value=2.1e-54  Score=366.06  Aligned_cols=136  Identities=32%  Similarity=0.503  Sum_probs=128.1

Q ss_pred             EEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654           15 IIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN   89 (309)
Q Consensus        15 i~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~   89 (309)
                      |+|||||+||+||+.|++||+++||||+|+|++     +||++|.+||++|.+    |+++|||+|||||+||||+||||
T Consensus         1 I~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGtGiG~siaANK~   76 (144)
T TIGR00689         1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVA----GEVSLGILICGTGIGMSIAANKF   76 (144)
T ss_pred             CEEeeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCceEEEEcCCcHHHHHHHhcC
Confidence            689999999999999999999999999999984     699999999999998    99999999999999999999999


Q ss_pred             CceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhh
Q 021654           90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCF  158 (309)
Q Consensus        90 ~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~f  158 (309)
                      ||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++|    +++++.+.|..+
T Consensus        77 ~GIraa~~~d~~~A~~ar~hNnaNVl~lGar~ig~~~a~~iv~~fL~t~f~gg----rh~~Rv~~i~~~  141 (144)
T TIGR00689        77 KGIRAALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAFLTTQFEGG----RHQRRIDKIIEY  141 (144)
T ss_pred             CCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCCC----cHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999974    566666666554

Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.

>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB)

Probab=100.00  E-value=1.2e-53  Score=360.75  Aligned_cols=124  Identities=39%  Similarity=0.605  Sum_probs=116.0

Q ss_pred             EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCC-----CcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcC
Q 021654           14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSD-----YYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANK   88 (309)
Q Consensus        14 ki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~~-----y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK   88 (309)
                      ||+|||||+|++||+.|++||+++||||+|+|+++     ||++|.+||++|.+    |+++|||+|||||+||+|+|||
T Consensus         1 KI~igsDh~g~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~----~~~d~GIliCgtGiG~~iaANK   76 (140)
T PF02502_consen    1 KIAIGSDHAGFELKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVAS----GEADRGILICGTGIGMSIAANK   76 (140)
T ss_dssp             EEEEEE-GGGHHHHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHT----TSSSEEEEEESSSHHHHHHHHT
T ss_pred             CEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHc----ccCCeEEEEcCCChhhhhHhhc
Confidence            89999999999999999999999999999999974     99999999999999    9999999999999999999999


Q ss_pred             CCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCC
Q 021654           89 NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKA  141 (309)
Q Consensus        89 ~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~  141 (309)
                      |||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++
T Consensus        77 ~~GIrAa~~~d~~~A~~ar~hNdaNVL~lG~~~~~~~~a~~i~~~~l~t~f~~  129 (140)
T PF02502_consen   77 VPGIRAALCSDPYSAKMAREHNDANVLCLGARVIGEELAKEIVDAFLNTEFEG  129 (140)
T ss_dssp             STT--EEE-SSHHHHHHHHHTT--SEEEEETTTSHHHHHHHHHHHHHHGGHHH
T ss_pred             CCCEEEEeeCCHHHHHHHHHhcCCcEEEechhhccHHHHHHHHHHHhCCCCCc
Confidence            99999999999999999999999999999999999999999999999999986

Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....

>PRK09273 hypothetical protein; Provisional

Probab=100.00  E-value=3.1e-48  Score=344.03  Aligned_cols=150  Identities=21%  Similarity=0.241  Sum_probs=141.3

Q ss_pred             cEEEEEeCcccHH----HHHHHHHHHHhCCCcEEEecCC-------CCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654           13 LKIIAGADSFGAE----LKDALVSHLRSLNIDVEDLGTS-------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG   81 (309)
Q Consensus        13 mki~i~~D~~g~~----lk~~l~~~l~~~g~ev~d~G~~-------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G   81 (309)
                      |||++....+...    +-+.|++||+++||||+|+|++       |||++|.+||++|.+    |+++|||++||||+|
T Consensus         1 mkiali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~----g~~d~GIliCGTGiG   76 (211)
T PRK09273          1 MKIALINENSQAAKNAIIYEALKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLNS----KAVDFVVTGCGTGQG   76 (211)
T ss_pred             CeEEeecccchhhhhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCcHHH
Confidence            8999999988765    5578999999999999999982       699999999999998    999999999999999


Q ss_pred             hhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccc----cCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhh
Q 021654           82 VAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM----STSKESAVEILDTWLKTPFKAPCPASGFKPWEENISC  157 (309)
Q Consensus        82 ~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~----~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~  157 (309)
                      |+|+||||||||||+|+|+++|+|+|+|||+||||||+|    |+|+++|++|+++||+++|++|||.++.+|..+    
T Consensus        77 ~siAANK~pGIraalc~d~~sA~lar~hNnaNVL~Lg~r~~~g~~g~~~a~~Ive~fl~tef~gGyp~er~~~~~~----  152 (211)
T PRK09273         77 AMLALNSFPGVVCGYCIDPTDAYLFAQINNGNALSLPFAKGFGWGAELNLRYIFEKLFTGERGEGYPKERAEPQQR----  152 (211)
T ss_pred             HHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEEEcCCcCCCcccHHHHHHHHHHHHcCCccCCCChHHhhHHHh----
Confidence            999999999999999999999999999999999999999    999999999999999999999999999999887    


Q ss_pred             hhhhcccccccccc
Q 021654          158 FFDKSMTEMPLIGK  171 (309)
Q Consensus       158 fl~~sl~el~~i~~  171 (309)
                       ..+.|+++.+++.
T Consensus       153 -n~~~l~~~~~~~~  165 (211)
T PRK09273        153 -NAGILNEVKAATY  165 (211)
T ss_pred             -hHHHHHHHHHHHc
Confidence             6888888888874

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.42  E-value=1.2e-12  Score=96.67  Aligned_cols=68  Identities=26%  Similarity=0.401  Sum_probs=62.1

Q ss_pred             EEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          217 IVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       217 ~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      +++++||...++|+|+.. |++||++|++++.  .+++.+.+++||++++|++++|+++|.++.++.++++
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~--~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~V   70 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT--VDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLVV   70 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEEE--ETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEEE--EccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEEE
Confidence            578999999999999999 8899999999995  5799999999999999999999999999998876553

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=99.23  E-value=2.3e-10  Score=100.85  Aligned_cols=142  Identities=15%  Similarity=0.161  Sum_probs=95.8

Q ss_pred             HHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhccccccccccCCCCCCCCCCCccceeEEeecCCCCCeeecCCceEE
Q 021654          128 VEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSSSSTCSICCLVKNRELNPVEMIPGGSMK  207 (309)
Q Consensus       128 ~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~sl~el~~i~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~~pgg~~~  207 (309)
                      ...+..|.+....   |   .......|+++++-++.++..-..+ .   ..|      ..+++..+.... ...|.+++
T Consensus        34 ~~~is~~E~g~~~---p---~~~~l~~ia~~l~v~~~~l~~~~~~-~---~~~------~~v~~~~e~~~~-~~~g~~~~   96 (185)
T PRK09943         34 HSAISTIEQDKVS---P---AISTLQKLLKVYGLSLSEFFSEPEK-P---DEP------QVVINQDDLIEM-GSQGVSMK   96 (185)
T ss_pred             HHHHHHHHcCCCC---C---CHHHHHHHHHHhCCCHHHHccCccc-c---CCc------ceEEchhHhhcc-ccCCceEE
Confidence            4456677665442   2   2355678999999998887532211 1   111      134444443222 12344445


Q ss_pred             EeeeC-CC-e---EEEEEcCCCcC-CCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          208 IIRES-PT-S---AIVRFKAGSVE-PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       208 il~~~-~~-~---~~~~l~pG~~~-p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      ++... +. .   .+.++.||... +.|+|+..|++||++|++++++  +++.+.|.+||++++|++++|+++|.++.++
T Consensus        97 ~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~--~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~  174 (185)
T PRK09943         97 LVHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI--NGQDYHLVAGQSYAINTGIPHSFSNTSAGIC  174 (185)
T ss_pred             EeccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEE--CCEEEEecCCCEEEEcCCCCeeeeCCCCCCe
Confidence            54322 11 1   34578898865 5778999999999999999964  5999999999999999999999999998888


Q ss_pred             EEEEcCc
Q 021654          282 FIKWDGR  288 (309)
Q Consensus       282 ~i~~~~~  288 (309)
                      .++|...
T Consensus       175 ~~l~~~~  181 (185)
T PRK09943        175 RIISAHT  181 (185)
T ss_pred             EEEEEeC
Confidence            8777543

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.22  E-value=2.9e-10  Score=94.76  Aligned_cols=65  Identities=17%  Similarity=0.186  Sum_probs=56.2

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee-CCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      ..++++||+..+.|+|...|++|||+|+++++. . +++++.|.|||++++|++.+|++.|.++..+
T Consensus        38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~-i~~g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~  103 (125)
T PRK13290         38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEVED-LATGEVHPIRPGTMYALDKHDRHYLRAGEDMRL  103 (125)
T ss_pred             EEEEECCCCcccceeCCCEEEEEEEeCEEEEEE-cCCCEEEEeCCCeEEEECCCCcEEEEcCCCEEE
Confidence            457999999999999877788999999999951 3 4899999999999999999999999844444

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.20  E-value=7.2e-11  Score=98.25  Aligned_cols=63  Identities=35%  Similarity=0.557  Sum_probs=58.6

Q ss_pred             EEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          216 AIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      ..++++||...++|.|+ ..+.+|||+|++++++.  ++.+.+.+||++++|+|++|++.|.++..
T Consensus        46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~--g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~  109 (131)
T COG1917          46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE--GEKKELKAGDVIIIPPGVVHGLKAVEDEP  109 (131)
T ss_pred             EEEEECCCcccccccCCCcceEEEEEecEEEEEec--CCceEecCCCEEEECCCCeeeeccCCCCc
Confidence            57899999999999999 77889999999999754  99999999999999999999999999885

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.19  E-value=2.2e-10  Score=95.46  Aligned_cols=83  Identities=28%  Similarity=0.442  Sum_probs=65.5

Q ss_pred             ecCCceEEEeeeCCC--eEEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEc
Q 021654          200 MIPGGSMKIIRESPT--SAIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       200 ~~pgg~~~il~~~~~--~~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~  276 (309)
                      ..+++....+.....  ...+.+.||...++|.|.. +|.+||++|++.+++  +++...|++||+++||+|++|+++|+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~--~~~~~~v~~gd~~~iP~g~~H~~~N~   98 (127)
T COG0662          21 FRPWGSYTVLDAGDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTI--GGEEVEVKAGDSVYIPAGTPHRVRNT   98 (127)
T ss_pred             EeCCcceeecccCCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEE--CCEEEEecCCCEEEECCCCcEEEEcC
Confidence            445555555443333  2678899999876665554 777999999999965  59999999999999999999999999


Q ss_pred             CCceEEEE
Q 021654          277 EETEFFIK  284 (309)
Q Consensus       277 gd~~~~i~  284 (309)
                      +..++.+.
T Consensus        99 G~~~L~li  106 (127)
T COG0662          99 GKIPLVLI  106 (127)
T ss_pred             CCcceEEE
Confidence            99887644

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.09  E-value=8.1e-10  Score=110.78  Aligned_cols=91  Identities=18%  Similarity=0.180  Sum_probs=75.5

Q ss_pred             eeecCCceEEEeeeCCCe--EEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEE
Q 021654          198 VEMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK  274 (309)
Q Consensus       198 ~~~~pgg~~~il~~~~~~--~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~  274 (309)
                      ....|||..+++..+...  ..+++.||...+.|.|.. .|.+||++|+++++  .+++++.|.+||++++|++++|++.
T Consensus       359 ~~~~pWG~~~~~~~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~--~dg~~~~l~~GDsi~ip~~~~H~~~  436 (468)
T TIGR01479       359 EVYRPWGKYDSIDQGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVT--IGDETLLLTENESTYIPLGVIHRLE  436 (468)
T ss_pred             eEECCCCceEEEecCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEE--ECCEEEEecCCCEEEECCCCcEEEE
Confidence            446889988887776554  778999999888776654 44489999999995  5699999999999999999999999


Q ss_pred             EcCCceEEEEEcCccc
Q 021654          275 YYEETEFFIKWDGRWD  290 (309)
Q Consensus       275 n~gd~~~~i~~~~~~~  290 (309)
                      |.+++++.++|...-.
T Consensus       437 N~g~~~~~~i~v~~~~  452 (468)
T TIGR01479       437 NPGKIPLELIEVQSGS  452 (468)
T ss_pred             cCCCCCEEEEEEEcCC
Confidence            9999999888776544

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=99.07  E-value=1.6e-09  Score=93.01  Aligned_cols=85  Identities=24%  Similarity=0.336  Sum_probs=72.7

Q ss_pred             eeecCCceEEEeeeCCCe--EEEEEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEE
Q 021654          198 VEMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK  274 (309)
Q Consensus       198 ~~~~pgg~~~il~~~~~~--~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~  274 (309)
                      ....|||..+++...+..  ..+++.||...++|.|....+ .+|++|++.+.  .+++.+.+.+||+++||+|..|++.
T Consensus        46 ~~~rpWG~~~~l~~~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~--~~~~~~~~~~g~sv~Ip~g~~H~i~  123 (151)
T PF01050_consen   46 RVYRPWGSYEVLDEGEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVT--LDDEEFTLKEGDSVYIPRGAKHRIE  123 (151)
T ss_pred             eEecCCcEEEEEEccCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEE--ECCEEEEEcCCCEEEECCCCEEEEE
Confidence            345799999988877665  678999999999998875444 89999999995  4699999999999999999999999


Q ss_pred             EcCCceEEEE
Q 021654          275 YYEETEFFIK  284 (309)
Q Consensus       275 n~gd~~~~i~  284 (309)
                      |.++.++.+.
T Consensus       124 n~g~~~L~~I  133 (151)
T PF01050_consen  124 NPGKTPLEII  133 (151)
T ss_pred             CCCCcCcEEE
Confidence            9998886543

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.04  E-value=1.4e-09  Score=109.18  Aligned_cols=90  Identities=17%  Similarity=0.154  Sum_probs=71.9

Q ss_pred             eecCCceEEEeeeCCCe--EEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEE
Q 021654          199 EMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY  275 (309)
Q Consensus       199 ~~~pgg~~~il~~~~~~--~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n  275 (309)
                      ...|||....+......  ..+++.||...+.|.|.. .|.+||++|+++++  .+++++.|.|||++++|++.+|+++|
T Consensus       369 ~~rpWG~~~~l~~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~--idg~~~~L~~GDSi~ip~g~~H~~~N  446 (478)
T PRK15460        369 VYRPWGKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVT--IDGDIKLLGENESIYIPLGATHCLEN  446 (478)
T ss_pred             EECCCCceEeecCCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEE--ECCEEEEecCCCEEEECCCCcEEEEc
Confidence            45788877766555443  678999998775554433 46699999999995  46999999999999999999999999


Q ss_pred             cCCceEEEEEcCccc
Q 021654          276 YEETEFFIKWDGRWD  290 (309)
Q Consensus       276 ~gd~~~~i~~~~~~~  290 (309)
                      .++.++.++|+..-.
T Consensus       447 ~g~~~l~iI~V~~g~  461 (478)
T PRK15460        447 PGKIPLDLIEVRSGS  461 (478)
T ss_pred             CCCCCEEEEEEEcCC
Confidence            999999888775443

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=99.02  E-value=4.8e-09  Score=102.17  Aligned_cols=93  Identities=24%  Similarity=0.417  Sum_probs=72.1

Q ss_pred             ecCCCCCeeecCCceEEEeeeC--CC-----eEEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEee---CCeEEEecC
Q 021654          191 KNRELNPVEMIPGGSMKIIRES--PT-----SAIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLT---KGERFDLTV  259 (309)
Q Consensus       191 ~~~e~~~~~~~pgg~~~il~~~--~~-----~~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~---~~~~~~L~p  259 (309)
                      +-.+.++ ...+||+.+++...  |.     ...+++.||...++|||+. .|++||++|++++++..   +++++.+++
T Consensus       217 ~~~~~~p-~~~~gG~~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~  295 (367)
T TIGR03404       217 HLSEQKP-KQVPGGTVRIADSTNFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQA  295 (367)
T ss_pred             EhhhCCc-eecCCceEEEEChhhccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECC
Confidence            3344444 45678888866442  21     1678999999999999996 56699999999997642   246899999


Q ss_pred             CcEEEECCCCeEEEEEcCCceEEEE
Q 021654          260 GDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       260 GD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ||.+++|+|..|+++|.+++++.++
T Consensus       296 GD~~~iP~g~~H~i~N~G~e~l~fL  320 (367)
T TIGR03404       296 GDVGYVPRNMGHYVENTGDETLVFL  320 (367)
T ss_pred             CCEEEECCCCeEEEEECCCCCEEEE
Confidence            9999999999999999998776433

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.98  E-value=2.9e-09  Score=99.14  Aligned_cols=67  Identities=25%  Similarity=0.330  Sum_probs=60.0

Q ss_pred             EEEEEcCCCcCCC-eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPA-HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~-H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      .+++++||...+. |+|..+|.+|||+|++.+.  .+++.+.+.+||++||||+++|.+.|+|++++.++
T Consensus       182 ~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~--~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~~l  249 (260)
T TIGR03214       182 HILSFEPGASHPYIETHVMEHGLYVLEGKGVYN--LDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFRYL  249 (260)
T ss_pred             EEEEECCCcccCCcccccceeEEEEEeceEEEE--ECCEEEEecCCCEEEECCCCCEEEEecCCCcEEEE
Confidence            6799999999996 6677778899999999995  56999999999999999999999999999887543

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>smart00835 Cupin_1 Cupin

Probab=98.95  E-value=9e-09  Score=87.37  Aligned_cols=71  Identities=23%  Similarity=0.228  Sum_probs=59.8

Q ss_pred             EEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCC----eEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKG----ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~----~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      ..++++||+..++|+|+ ..|.+||++|++++.+...+    ..+.+.+||++++|+++.|.+.|.++.++.+++.
T Consensus        33 ~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~  108 (146)
T smart00835       33 ARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAF  108 (146)
T ss_pred             EEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEE
Confidence            56789999999999997 66789999999999754221    1899999999999999999999998877765543

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=98.93  E-value=8.4e-09  Score=80.84  Aligned_cols=79  Identities=28%  Similarity=0.453  Sum_probs=62.1

Q ss_pred             ecCCceEEEeeeCC-C----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEE
Q 021654          200 MIPGGSMKIIRESP-T----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK  274 (309)
Q Consensus       200 ~~pgg~~~il~~~~-~----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~  274 (309)
                      ..+|.+++.+...+ .    ..++++.||...|.|.|+..+++|||+|++..  .  +.  ...+||+++.|+|..|+..
T Consensus         6 ~~~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d--~--~~--~~~~G~~~~~p~g~~h~~~   79 (91)
T PF12973_consen    6 PRPGVSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEEILVLEGELSD--G--DG--RYGAGDWLRLPPGSSHTPR   79 (91)
T ss_dssp             CSTTEEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE--T--TC--EEETTEEEEE-TTEEEEEE
T ss_pred             CCCCEEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE--C--Cc--cCCCCeEEEeCCCCccccC
Confidence            35677777776544 2    37899999999999999999999999999997  3  44  4599999999999999999


Q ss_pred             EcCCceEEEE
Q 021654          275 YYEETEFFIK  284 (309)
Q Consensus       275 n~gd~~~~i~  284 (309)
                      ..+++.++++
T Consensus        80 s~~gc~~~vk   89 (91)
T PF12973_consen   80 SDEGCLILVK   89 (91)
T ss_dssp             ESSCEEEEEE
T ss_pred             cCCCEEEEEE
Confidence            8777766654

>PRK11171 hypothetical protein; Provisional

Probab=98.91  E-value=5.9e-09  Score=97.37  Aligned_cols=68  Identities=24%  Similarity=0.307  Sum_probs=60.7

Q ss_pred             EEEEEcCCCcCCCe-ecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          216 AIVRFKAGSVEPAH-HHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~p~H-~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      ..++++||...+.| +|...|.+||++|+++++  .+++++.|.+||+++++++.+|.++|.+++++.+++
T Consensus       187 ~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~--~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~yl~  255 (266)
T PRK11171        187 NIVTFEPGASIPFVETHVMEHGLYVLEGKGVYR--LNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFRYLL  255 (266)
T ss_pred             EEEEECCCCEEccCcCCCceEEEEEEeCEEEEE--ECCEEEEeCCCCEEEECCCCCEEEECCCCCcEEEEE
Confidence            56899999999884 788888899999999995  569999999999999999999999999988876543

>PRK11171 hypothetical protein; Provisional

Probab=98.85  E-value=3.1e-08  Score=92.48  Aligned_cols=70  Identities=17%  Similarity=0.301  Sum_probs=59.7

Q ss_pred             EEEEEcCCCcCCCeecC--CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654          216 AIVRFKAGSVEPAHHHT--FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~--~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~  287 (309)
                      .++++.||+....|.|.  ..|++||++|+++++  .+++++.|.+||++++|++.+|+++|.++.++.++|..
T Consensus        64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~--~~g~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v~  135 (266)
T PRK11171         64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLT--LEGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWIR  135 (266)
T ss_pred             EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEE--ECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence            67889999887666554  456699999999996  46999999999999999999999999998888777663

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.82  E-value=1.9e-08  Score=85.82  Aligned_cols=72  Identities=19%  Similarity=0.263  Sum_probs=61.9

Q ss_pred             EEEEEcCCCc-CCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCC--CeEEEEEcCCceEEEEEcCcc
Q 021654          216 AIVRFKAGSV-EPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEETEFFIKWDGRW  289 (309)
Q Consensus       216 ~~~~l~pG~~-~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g--~~H~~~n~gd~~~~i~~~~~~  289 (309)
                      -+..++||.. ...|||..+++ +|||+|++++++  ++..+.|+|||++=+|+|  +-|.+.|.++..++++-+|..
T Consensus        45 n~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~--d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG~r  120 (161)
T COG3837          45 NLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE--DGGETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVGTR  120 (161)
T ss_pred             ceEEeCCCCccccccccccCceEEEEEcCceEEEE--CCeeEEecCCceeeccCCCcceeEEeecCCceEEEEEeccc
Confidence            3567899875 57899986555 999999999964  599999999999999999  999999999999988777754

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=98.81  E-value=3.9e-08  Score=95.81  Aligned_cols=79  Identities=23%  Similarity=0.410  Sum_probs=62.8

Q ss_pred             ecCCceEEEeeeC--CC-----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee-CCeEE--EecCCcEEEECCCC
Q 021654          200 MIPGGSMKIIRES--PT-----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KGERF--DLTVGDYLFTPAGD  269 (309)
Q Consensus       200 ~~pgg~~~il~~~--~~-----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~~~~--~L~pGD~v~IP~g~  269 (309)
                      +.+||..+.+...  |.     ...+++.||+..++|||...|++||++|++++++.. +++.+  .|++||++++|+|.
T Consensus        47 ~~~gG~~~~~~~~~lP~l~~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~  126 (367)
T TIGR03404        47 LENGGWAREVTVRDLPISTAIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGI  126 (367)
T ss_pred             cccCceEEEeChhhccCcccccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCC
Confidence            3466766544221  22     267899999999999999999999999999998742 35666  49999999999999


Q ss_pred             eEEEEEcCC
Q 021654          270 VHRVKYYEE  278 (309)
Q Consensus       270 ~H~~~n~gd  278 (309)
                      +|+++|.++
T Consensus       127 ~H~~~n~~~  135 (367)
T TIGR03404       127 PHSLQGLDE  135 (367)
T ss_pred             eEEEEECCC
Confidence            999999864

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.78  E-value=4e-08  Score=91.51  Aligned_cols=70  Identities=20%  Similarity=0.244  Sum_probs=59.1

Q ss_pred             EEEEEcCCCcCC-CeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654          216 AIVRFKAGSVEP-AHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       216 ~~~~l~pG~~~p-~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~  287 (309)
                      .+++++||+..+ .|+|+. ++++||++|+++++  .+++++.|.+||++++|++.+|+++|.++.++.++|..
T Consensus        61 ~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~--~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v~  132 (260)
T TIGR03214        61 YIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVT--AEGETHELREGGYAYLPPGSKWTLANAQAEDARFFLYK  132 (260)
T ss_pred             EEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEE--ECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence            578899987654 445665 56799999999996  46999999999999999999999999998888877655

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=98.77  E-value=9.2e-08  Score=80.98  Aligned_cols=63  Identities=24%  Similarity=0.342  Sum_probs=51.0

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--------eEEE--ecCCcEEEECCCCeEEEEEcCC
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--------ERFD--LTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--------~~~~--L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      ....++||+...+|||...+++||++|++++.+...+        ....  +++||++++|+|.+|.+.|.++
T Consensus        37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~  109 (144)
T PF00190_consen   37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDGD  109 (144)
T ss_dssp             EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECSS
T ss_pred             EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCCC
Confidence            3456799999999999888889999999998655443        2344  9999999999999999999973

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.74  E-value=7e-08  Score=83.25  Aligned_cols=62  Identities=13%  Similarity=0.087  Sum_probs=53.1

Q ss_pred             cCCCcCCCeecCCceEEEEEecEEEEEEeeCCe--EEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGE--RFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~--~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      -||....+|.|+.+|++|+++|.+.+.+..+++  ...|++||++++|+|++|+....+++..+
T Consensus        36 Gpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~L   99 (159)
T TIGR03037        36 GPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGSIGL   99 (159)
T ss_pred             CCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCCcEEE
Confidence            567778899999999999999999997754443  89999999999999999999887666654

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.74  E-value=3.2e-08  Score=80.78  Aligned_cols=68  Identities=22%  Similarity=0.390  Sum_probs=58.4

Q ss_pred             EEEEEcCCCcCCCeecCCceE-EEEEecEEEEEEee-CCeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLT-KGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~-~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      ..++++||.....|.|..-|. +|||+|+..+|.+. =.++.++.|||++|||||+||.-.|.++.++..
T Consensus        49 ~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s~  118 (142)
T COG4101          49 HLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLSA  118 (142)
T ss_pred             EEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeEE
Confidence            678999999999999988887 99999999998531 124678999999999999999999999877653

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.72  E-value=9.3e-08  Score=83.74  Aligned_cols=62  Identities=11%  Similarity=0.055  Sum_probs=53.5

Q ss_pred             cCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      -||....+|.|+.+|++|+++|.+.+.+..++  +...|++||++++|+|++|+.....++..+
T Consensus        42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~L  105 (177)
T PRK13264         42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGL  105 (177)
T ss_pred             cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCCeEEE
Confidence            57788999999999999999999999775445  589999999999999999999886665544

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.66  E-value=9.7e-08  Score=77.23  Aligned_cols=59  Identities=24%  Similarity=0.396  Sum_probs=44.2

Q ss_pred             CCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          222 AGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       222 pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      ++...++|+|+..++.||++|++++.  ++++.+.++|||.+++||+.+|++....+.+..
T Consensus        12 ~~~~~~~h~h~~~~i~~v~~G~~~~~--~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~~   70 (136)
T PF02311_consen   12 PNFEFPPHWHDFYEIIYVLSGEGTLH--IDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPWE   70 (136)
T ss_dssp             TT-SEEEETT-SEEEEEEEEE-EEEE--ETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEEE
T ss_pred             CCCccCCEECCCEEEEEEeCCEEEEE--ECCEEEEEECCEEEEecCCccEEEecCCCCCEE
Confidence            44566889999999999999999995  569999999999999999999999998854443

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.65  E-value=2.7e-07  Score=82.29  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=56.5

Q ss_pred             EEEEEcCCCc------CCCeecCC---ceEEEEEecEEEEEEeeCC---eEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          216 AIVRFKAGSV------EPAHHHTF---GHDLVVLQGKKSVWNLTKG---ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~------~p~H~H~~---~e~vyVlsG~l~v~i~~~~---~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      .+.++.||..      .+.|+|+.   .|.+||++|+..+.++..+   ..+.+.|||.++||++..|++.|+++.++.+
T Consensus        71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~f  150 (191)
T PRK04190         71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVF  150 (191)
T ss_pred             EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCCEEE
Confidence            5678889886      56799964   4779999999999765221   2689999999999999999999999888754


Q ss_pred             EE
Q 021654          284 KW  285 (309)
Q Consensus       284 ~~  285 (309)
                      +.
T Consensus       151 l~  152 (191)
T PRK04190        151 LA  152 (191)
T ss_pred             EE
Confidence            43

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=98.61  E-value=2.9e-07  Score=82.39  Aligned_cols=72  Identities=18%  Similarity=0.193  Sum_probs=62.0

Q ss_pred             eEEEEEcCCCcCCCeecCCce---EEEEEecEEEEEEeeCC---eEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          215 SAIVRFKAGSVEPAHHHTFGH---DLVVLQGKKSVWNLTKG---ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       215 ~~~~~l~pG~~~p~H~H~~~e---~vyVlsG~l~v~i~~~~---~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      +.++.+.+|+....|||+..+   +.||++|++++.++...   .+..+++||.+|||++--|+..|+|+.++.+...
T Consensus        82 g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v  159 (209)
T COG2140          82 GAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNV  159 (209)
T ss_pred             ceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEE
Confidence            478899999999999997543   58999999999877555   6788999999999999999999999999865433

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.55  E-value=1.2e-06  Score=79.70  Aligned_cols=71  Identities=21%  Similarity=0.487  Sum_probs=54.9

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE-EEEEcCccc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF-FIKWDGRWD  290 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~-~i~~~~~~~  290 (309)
                      .++++.. +..+|| +.+.|..||++|++++++  +++++.++|||++|||+|..|.+...+...+ +++|.+.|.
T Consensus       160 Gf~~~~~-~sf~wt-l~~dEi~YVLEGe~~l~I--dG~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~~Pa~w~  231 (233)
T PRK15457        160 GFMQWEN-AFFPWT-LNYDEIDMVLEGELHVRH--EGETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVAWPANWQ  231 (233)
T ss_pred             EEEEEec-Ccccee-ccceEEEEEEEeEEEEEE--CCEEEEeCCCcEEEECCCCeEEecCCCCeeEEEEEecCccc
Confidence            5666664 334433 467788999999999964  6999999999999999999988876655444 567777774

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.51  E-value=7.6e-07  Score=75.54  Aligned_cols=67  Identities=24%  Similarity=0.420  Sum_probs=42.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC-------CeEEEecCCcEEEECCCCeEEEEEcCC-ceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK-------GERFDLTVGDYLFTPAGDVHRVKYYEE-TEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~-------~~~~~L~pGD~v~IP~g~~H~~~n~gd-~~~~  282 (309)
                      .+.++.||...|.|.|..+|.++||+|++++.+...       -+++.+.|++.++||++.+|+++|+++ +++.
T Consensus        47 wlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlq  121 (167)
T PF02041_consen   47 WLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQ  121 (167)
T ss_dssp             EEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EE
T ss_pred             EeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceE
Confidence            567999999999999999999999999999976411       246889999999999999999999983 5543

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=98.39  E-value=7.8e-07  Score=84.27  Aligned_cols=63  Identities=14%  Similarity=0.057  Sum_probs=53.7

Q ss_pred             EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      +...++....++|||...|++|+++|.+.++  ++++.+.++|||.+++|++++|.+...++...
T Consensus        30 ~~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~~--i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~~   92 (302)
T PRK10371         30 IEFRPPHIMPTSHWHGQVEVNVPFDGDVEYL--INNEKVQINQGHITLFWACTPHQLTDPGNCRS   92 (302)
T ss_pred             EEeeCCCCCCCCCccccEEEEEecCCcEEEE--ECCEEEEEcCCcEEEEecCCcccccccCCCce
Confidence            3455566778999999999999999999995  56999999999999999999999877665543

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=98.25  E-value=3.7e-06  Score=76.31  Aligned_cols=70  Identities=21%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC--ceEEEEEcCccc
Q 021654          215 SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE--TEFFIKWDGRWD  290 (309)
Q Consensus       215 ~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd--~~~~i~~~~~~~  290 (309)
                      ..++++.||...|.|.|...|+.+||+|.+.      ++.-.+.+||+++.|++..|+..+.++  +.++..+++++.
T Consensus       129 v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~------de~g~y~~Gd~i~~p~~~~H~p~a~~~~~Cicl~v~dapl~  200 (215)
T TIGR02451       129 VRLLYIEAGQSIPQHTHKGFELTLVLHGAFS------DETGVYGVGDFEEADGSVQHQPRTVSGGDCLCLAVLDAPLR  200 (215)
T ss_pred             EEEEEECCCCccCCCcCCCcEEEEEEEEEEE------cCCCccCCCeEEECCCCCCcCcccCCCCCeEEEEEecCCcc
Confidence            4789999999999999999998899999954      233467999999999999999999965  677777777764

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=98.16  E-value=7.8e-06  Score=75.80  Aligned_cols=52  Identities=33%  Similarity=0.467  Sum_probs=46.0

Q ss_pred             CCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEc
Q 021654          223 GSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       223 G~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~  276 (309)
                      +...++|||+..|++||++|++++++  +++.+.++|||.++||||+.|.....
T Consensus        33 ~~~~~~H~H~~~ei~~v~~G~~~~~i--~~~~~~l~~g~l~~i~p~~~H~~~~~   84 (278)
T PRK10296         33 ESVSGLHQHDYYEFTLVLTGRYYQEI--NGKRVLLERGDFVFIPLGSHHQSFYE   84 (278)
T ss_pred             hcCCCCcccccEEEEEEEeceEEEEE--CCEEEEECCCcEEEeCCCCccceeee
Confidence            44568999999999999999999964  59999999999999999999977543

>PRK13501 transcriptional activator RhaR; Provisional

Probab=98.13  E-value=6.6e-06  Score=76.90  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=49.3

Q ss_pred             CCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          222 AGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       222 pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      +....++|||+..|++|+++|++++.  ++++.+.+.+||.++||||.+|.+...++..
T Consensus        27 ~~~~~~~H~H~~~ei~~i~~G~~~~~--i~~~~~~l~~g~~~~I~p~~~H~~~~~~~~~   83 (290)
T PRK13501         27 PQETFVEHTHQFCEIVIVWRGNGLHV--LNDHPYRITCGDVFYIQAADHHSYESVHDLV   83 (290)
T ss_pred             CCCCCccccccceeEEEEecCceEEE--ECCeeeeecCCeEEEEcCCCcccccccCCeE
Confidence            34456799999999999999999995  4699999999999999999999988765544

>PRK13500 transcriptional activator RhaR; Provisional

Probab=98.04  E-value=1.4e-05  Score=75.95  Aligned_cols=56  Identities=21%  Similarity=0.312  Sum_probs=48.9

Q ss_pred             CCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          223 GSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       223 G~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      ....++|+|+..|++||++|++.+.  ++++.+.+.+||.++|||+.+|.+....+..
T Consensus        58 ~~~~~~H~H~~~el~~v~~G~g~~~--v~~~~~~l~~Gdl~~I~~~~~H~~~~~~~~~  113 (312)
T PRK13500         58 QDVFAEHTHDFCELVIVWRGNGLHV--LNDRPYRITRGDLFYIHADDKHSYASVNDLV  113 (312)
T ss_pred             CCCCCccccceEEEEEEEcCeEEEE--ECCEEEeecCCeEEEECCCCeecccccCCce
Confidence            3456899999999999999999995  5699999999999999999999988766543

>PRK13502 transcriptional activator RhaR; Provisional

Probab=98.04  E-value=1.3e-05  Score=74.48  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=49.9

Q ss_pred             cCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      .|....++|+|+..+++||++|++++.  ++++++.++|||.++|||+.+|.+...++..
T Consensus        26 ~~~~~~~~H~h~~~~l~~v~~G~~~~~--i~~~~~~l~~g~l~li~~~~~H~~~~~~~~~   83 (282)
T PRK13502         26 YPQDVFAEHTHEFCELVMVWRGNGLHV--LNERPYRITRGDLFYIRAEDKHSYTSVNDLV   83 (282)
T ss_pred             CCCCCCCccccceEEEEEEecCcEEEE--ECCEEEeecCCcEEEECCCCcccccccCCce
Confidence            345557899999999999999999995  5699999999999999999999987655533

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=98.01  E-value=1.4e-05  Score=74.26  Aligned_cols=56  Identities=14%  Similarity=0.220  Sum_probs=48.7

Q ss_pred             CCcCCCeecC-CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          223 GSVEPAHHHT-FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       223 G~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      +...++|||. ..+++|+++|.+.+.  .+++.+.+++||.+++||+++|++....+..
T Consensus        33 ~~~~~~H~H~~~~~l~~~~~G~~~~~--~~~~~~~l~~g~~~ii~~~~~H~~~~~~~~~   89 (287)
T TIGR02297        33 GRNMPVHFHDRYYQLHYLTEGSIALQ--LDEHEYSEYAPCFFLTPPSVPHGFVTDLDAD   89 (287)
T ss_pred             CCCCCCcccccceeEEEEeeCceEEE--ECCEEEEecCCeEEEeCCCCccccccCCCcc
Confidence            4567999998 799999999999984  5689999999999999999999997765543

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.00  E-value=6.5e-05  Score=58.55  Aligned_cols=68  Identities=19%  Similarity=0.274  Sum_probs=50.2

Q ss_pred             EEEEEcCCCcC-CCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          216 AIVRFKAGSVE-PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~-p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      ..+.++||+.- +.+.+...-.+||++|.+++++  .+.++.+.+|++++||+|-...++|.++.+..+.+
T Consensus        15 G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti--~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~LfF   83 (85)
T PF11699_consen   15 GMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI--HETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLFF   83 (85)
T ss_dssp             EEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE--TTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEEE
T ss_pred             EEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE--cCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEEE
Confidence            67889998765 4455555555999999999965  58999999999999999999999999998887654

>PLN00212 glutelin; Provisional

Probab=97.98  E-value=3.9e-05  Score=77.32  Aligned_cols=67  Identities=15%  Similarity=0.104  Sum_probs=58.0

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC----------------------------eEEEecCCcEEEECC
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG----------------------------ERFDLTVGDYLFTPA  267 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~----------------------------~~~~L~pGD~v~IP~  267 (309)
                      ..+++.|++...+|+|...+++||++|++.+.+...|                            +.+.+.+||.+.||+
T Consensus        83 ~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPa  162 (493)
T PLN00212         83 IRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPA  162 (493)
T ss_pred             EEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECC
Confidence            5678999999999999999999999999999654211                            236999999999999


Q ss_pred             CCeEEEEEcCCceEE
Q 021654          268 GDVHRVKYYEETEFF  282 (309)
Q Consensus       268 g~~H~~~n~gd~~~~  282 (309)
                      |++|++.|.++++++
T Consensus       163 G~~hw~yN~Gd~~~v  177 (493)
T PLN00212        163 GVAHWFYNDGDAPVV  177 (493)
T ss_pred             CCeEEEEeCCCCcEE
Confidence            999999999998864

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=97.96  E-value=4.5e-05  Score=68.70  Aligned_cols=72  Identities=18%  Similarity=0.318  Sum_probs=58.6

Q ss_pred             EEEEEcCCCcC-CCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcCcc
Q 021654          216 AIVRFKAGSVE-PAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRW  289 (309)
Q Consensus       216 ~~~~l~pG~~~-p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~~  289 (309)
                      .++++.|++.. ....-+..|- +||++|++++.  .+++++.|++|+++|+|||..|.++|...++.++.|....
T Consensus        64 yive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~--~~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~rk~  137 (264)
T COG3257          64 YIVELHPNGGSQRPEGDEGAETFLFVVSGEITVK--AEGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWIRKR  137 (264)
T ss_pred             heEEECCCCCCCCCCCCCcceEEEEEEeeeEEEE--EcCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEEeec
Confidence            67888776644 3444444454 99999999995  4699999999999999999999999999999888887543

>PRK13503 transcriptional activator RhaS; Provisional

Probab=97.91  E-value=1.5e-05  Score=73.60  Aligned_cols=55  Identities=24%  Similarity=0.353  Sum_probs=48.2

Q ss_pred             CCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654          222 AGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       222 pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      +....++|+|+..|++||++|.+++.  ++++.+.+++||.+++||+.+|.+....+
T Consensus        24 ~~~~~~~H~H~~~ei~~v~~G~~~~~--i~~~~~~l~~g~~~~i~~~~~h~~~~~~~   78 (278)
T PRK13503         24 PQAAFPEHHHDFHEIVIVEHGTGIHV--FNGQPYTLSGGTVCFVRDHDRHLYEHTDN   78 (278)
T ss_pred             ccccccccccCceeEEEEecCceeeE--ecCCcccccCCcEEEECCCccchhhhccC
Confidence            34567899999999999999999995  45899999999999999999998876544

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=97.90  E-value=5.1e-05  Score=70.29  Aligned_cols=74  Identities=27%  Similarity=0.308  Sum_probs=47.5

Q ss_pred             eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeE---EEecCCcEEEECCCCeEEEEEcCCceEEEEEcCcccc
Q 021654          215 SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER---FDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDM  291 (309)
Q Consensus       215 ~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~---~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~~~i  291 (309)
                      ..++++++|...|+|+|+....++|++|.+..  .  +..   ..|++|.+.+.|+|..|--.+.+++.+.+.-++..-+
T Consensus        38 ~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~~~--~--~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g~gp~  113 (251)
T PF14499_consen   38 GMRVKFPAGFSSPPHIHNADYRGTVISGELHN--G--DPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIEIGEGPY  113 (251)
T ss_dssp             EEEEEE-TT-EE--BEESS-EEEEEEESEEEE--T--TEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S---E
T ss_pred             eEEEEcCCCccCCCcceeeeEEEEEEEeEEEc--C--CCcccceecCCCceEeccCCCceeeeccCccEEEEEEeCCCcc
Confidence            47899999999999999999999999999877  3  443   3499999999999999988777766565544444444


Q ss_pred             c
Q 021654          292 F  292 (309)
Q Consensus       292 ~  292 (309)
                      .
T Consensus       114 ~  114 (251)
T PF14499_consen  114 D  114 (251)
T ss_dssp             E
T ss_pred             c
Confidence            4

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.82  E-value=7.2e-05  Score=72.09  Aligned_cols=66  Identities=24%  Similarity=0.386  Sum_probs=59.3

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      .+..+.||...+.|.|......+|++|+..++ .++++++.+++||++.+|++..|...|.++.+++
T Consensus        84 ~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t-~V~g~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~  149 (335)
T TIGR02272        84 GLQLILPGEVAPSHRHTQSALRFIVEGKGAFT-AVDGERTTMHPGDFIITPSWTWHDHGNPGDEPMI  149 (335)
T ss_pred             hhEEeCCCCCCCccccccceEEEEEEcCceEE-EECCEEEeeeCCCEEEeCCCeeEecccCCCCcEE
Confidence            56788999999999999999999999999644 3579999999999999999999999999888754

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=97.77  E-value=5.5e-05  Score=70.09  Aligned_cols=108  Identities=19%  Similarity=0.310  Sum_probs=65.0

Q ss_pred             cceeEEeecCCCCCeeec----CCceEEEeeeCCCe-----EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeE
Q 021654          184 CSICCLVKNRELNPVEMI----PGGSMKIIRESPTS-----AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER  254 (309)
Q Consensus       184 ~~~~~v~~~~e~~~~~~~----pgg~~~il~~~~~~-----~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~  254 (309)
                      +.-.......+.+++...    +|.+++.|..++..     .++.+++|.....|+|...+..||++|++.+.....+..
T Consensus       133 ~~~ivwld~~dl~W~~~~~~~~~g~~~a~Lwgd~~~g~~~gll~kLPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~~~  212 (251)
T PF14499_consen  133 KDNIVWLDASDLEWISAPPGPPPGAQIAFLWGDPNTGQYTGLLLKLPAGFTGRIHTHASNERAVVISGELDYQSYGASNF  212 (251)
T ss_dssp             GG-EEEEECCCS--EE-SSSTT-SEEEEEEEE-TTS-EE-EEEEE-SSEE--SEEE--S-EEEEEEEEEEEETTEEEETT
T ss_pred             cccceEeccccCCccccCCCCCCcceEEEEecCCCCCceeeEEEEcCCCCcCceeccCCceEEEEEEeEEEEeecccCCC
Confidence            344555566666666655    67788888777653     567888888899999999999999999999943333466


Q ss_pred             EEecCCcEEEECCCCeEEE-EEcCCceEEEEEcCcccc
Q 021654          255 FDLTVGDYLFTPAGDVHRV-KYYEETEFFIKWDGRWDM  291 (309)
Q Consensus       255 ~~L~pGD~v~IP~g~~H~~-~n~gd~~~~i~~~~~~~i  291 (309)
                      ..|.+|.+++-|++..|+. ....++.++|..+|.+++
T Consensus       213 ~~L~~GSYf~s~~~~~H~~~~~e~~~vlyIRtdG~l~~  250 (251)
T PF14499_consen  213 GTLDPGSYFGSPGHITHGIFITEDECVLYIRTDGKLSV  250 (251)
T ss_dssp             EEEEE-TT-EE--E------EESS-EEEEEEESS-TTS
T ss_pred             ccccCCcccccCCcccccccccCCCEEEEEEECCeeec
Confidence            8999999999999999999 555577888998888753

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=97.75  E-value=0.00016  Score=62.53  Aligned_cols=56  Identities=20%  Similarity=0.170  Sum_probs=41.4

Q ss_pred             CCCeecCCceEEEEEecEEEEEEeeCCeE---EEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          226 EPAHHHTFGHDLVVLQGKKSVWNLTKGER---FDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       226 ~p~H~H~~~e~vyVlsG~l~v~i~~~~~~---~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      ...|.|..+|.-|+++|++.|.+...++.   ..+++||.+.+|+|+.|+|.-.....+
T Consensus        85 ~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~~~i  143 (157)
T PF03079_consen   85 FEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGESPYI  143 (157)
T ss_dssp             CS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTTSSE
T ss_pred             heeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCCCcE
Confidence            46899999999999999999987665554   468999999999999999987654333

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=97.75  E-value=0.00057  Score=56.67  Aligned_cols=85  Identities=14%  Similarity=0.180  Sum_probs=67.8

Q ss_pred             cCCceEEEe-eeCCCe---EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEc
Q 021654          201 IPGGSMKII-RESPTS---AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       201 ~pgg~~~il-~~~~~~---~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~  276 (309)
                      ..|.+.|++ ..+..+   -..++.+|+....|.-...|-+|+++|++++....+++++.+.||..+.+.....|..++.
T Consensus        19 ~~w~SrRlll~~DgmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~   98 (126)
T PF06339_consen   19 ENWESRRLLLKDDGMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAK   98 (126)
T ss_pred             CCceEEEEEEccCCCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEec
Confidence            345566655 444433   4568899999999998889999999999999755578999999999999999999999998


Q ss_pred             CCceEEEEE
Q 021654          277 EETEFFIKW  285 (309)
Q Consensus       277 gd~~~~i~~  285 (309)
                      ++-.+.-+|
T Consensus        99 ~dm~~vCVF  107 (126)
T PF06339_consen   99 TDMRLVCVF  107 (126)
T ss_pred             CCEEEEEEc
Confidence            855554333

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.51  E-value=0.00018  Score=67.68  Aligned_cols=79  Identities=25%  Similarity=0.371  Sum_probs=67.3

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcCccccccch
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDE  295 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~~~i~~~e  295 (309)
                      .+.-+.||...|.|.|.+.-+-||++|+..+++ ++++...+.+||++..|.+..|.--|.+++++.  |...+||=+..
T Consensus        95 glQlilPGEvApsHrHsqsAlRFvveG~Ga~T~-VdGer~~M~~GDfilTP~w~wHdHgn~g~eP~i--WlDgLDiplv~  171 (351)
T COG3435          95 GLQLILPGEVAPSHRHNQSALRFVVEGKGAYTV-VDGERTPMEAGDFILTPAWTWHDHGNEGTEPCI--WLDGLDIPLVN  171 (351)
T ss_pred             hhheecCcccCCcccccccceEEEEeccceeEe-ecCceeeccCCCEEEccCceeccCCCCCCCceE--EEcccchHHHH
Confidence            456788999999999999999999999998874 689999999999999999999999999988874  66666654444


Q ss_pred             hH
Q 021654          296 DL  297 (309)
Q Consensus       296 ~~  297 (309)
                      .+
T Consensus       172 ~l  173 (351)
T COG3435         172 SL  173 (351)
T ss_pred             hh
Confidence            33

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.46  E-value=0.00061  Score=57.16  Aligned_cols=69  Identities=23%  Similarity=0.304  Sum_probs=40.6

Q ss_pred             EEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCC--eEEEecCC-cEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654          219 RFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKG--ERFDLTVG-DYLFTPAGDVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~--~~~~L~pG-D~v~IP~g~~H~~~n~gd~~~~i~~~~  287 (309)
                      ..++|....+|.|...++ ++|++|+.++.+..+.  +++.|... ..++|||++.|.+.+.++..+++.|..
T Consensus        39 ~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~svlLv~as  111 (131)
T PF05523_consen   39 NVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSEDSVLLVLAS  111 (131)
T ss_dssp             S--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT-EEEEEES
T ss_pred             cCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCCcEEEEEcC
Confidence            345566679999976555 9999999999765332  45777655 499999999999999886666555554

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.45  E-value=0.00048  Score=52.00  Aligned_cols=58  Identities=22%  Similarity=0.312  Sum_probs=42.7

Q ss_pred             EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC
Q 021654          217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g  277 (309)
                      +..-.||. .+.+... .|.+|||+|++++.. .+++++.+.|||++++|+|..-.+....
T Consensus        11 ~w~~~pg~-~~~~~~~-~E~~~vleG~v~it~-~~G~~~~~~aGD~~~~p~G~~~~w~v~~   68 (74)
T PF05899_consen   11 VWECTPGK-FPWPYPE-DEFFYVLEGEVTITD-EDGETVTFKAGDAFFLPKGWTGTWEVRE   68 (74)
T ss_dssp             EEEEECEE-EEEEESS-EEEEEEEEEEEEEEE-TTTEEEEEETTEEEEE-TTEEEEEEEEE
T ss_pred             EEEECCce-eEeeCCC-CEEEEEEEeEEEEEE-CCCCEEEEcCCcEEEECCCCEEEEEECe
Confidence            34445543 3344433 788999999999974 3789999999999999999987776543

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=97.42  E-value=0.0035  Score=53.53  Aligned_cols=67  Identities=15%  Similarity=0.148  Sum_probs=45.5

Q ss_pred             EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      .+.--|+.....|.-+..|++|-++|.+.+.+..++  +...+++||.+++|+++||+-.-..++.-+|
T Consensus        37 mvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~tiGLV  105 (151)
T PF06052_consen   37 MVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPADTIGLV  105 (151)
T ss_dssp             EEEESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT-EEEE
T ss_pred             EEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCCcEEEE
Confidence            344567788899999999999999999999776555  4588999999999999999987777666543

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=97.42  E-value=0.00071  Score=59.92  Aligned_cols=67  Identities=21%  Similarity=0.319  Sum_probs=41.9

Q ss_pred             EEEEcCCCcC------CCeecCC-------ceEEEEEecEEEEEEeeCCe-------EEEecCCcEEEECCCCeEEEEEc
Q 021654          217 IVRFKAGSVE------PAHHHTF-------GHDLVVLQGKKSVWNLTKGE-------RFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       217 ~~~l~pG~~~------p~H~H~~-------~e~vyVlsG~l~v~i~~~~~-------~~~L~pGD~v~IP~g~~H~~~n~  276 (309)
                      +..+.||..-      .=|.|+.       .|..+|++|++.+.++..+.       ...+.|||.++|||+-.|+..|+
T Consensus        54 iTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~  133 (182)
T PF06560_consen   54 ITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINT  133 (182)
T ss_dssp             EEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-
T ss_pred             eEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEEC
Confidence            4455665432      3477775       56689999999997764433       36789999999999999999999


Q ss_pred             CCceEEE
Q 021654          277 EETEFFI  283 (309)
Q Consensus       277 gd~~~~i  283 (309)
                      +++++.+
T Consensus       134 g~~~L~~  140 (182)
T PF06560_consen  134 GDEPLVF  140 (182)
T ss_dssp             SSS-EEE
T ss_pred             CCCcEEE
Confidence            9988753

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.37  E-value=0.00059  Score=65.86  Aligned_cols=64  Identities=16%  Similarity=0.162  Sum_probs=55.8

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      ....+.+|.....|.|.....++|++|+++..+  +++++..++||.+.+|+...|+..|.++..+
T Consensus       253 ~~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s~i--g~~~~~W~~gD~f~vPsW~~~~h~a~~da~L  316 (335)
T TIGR02272       253 FIQLLPKGFRTATYRSTDATVFCVVEGRGQVRI--GDAVFRFSPKDVFVVPSWHPVRFEASDDAVL  316 (335)
T ss_pred             HHhccCCCCCCCCccccccEEEEEEeCeEEEEE--CCEEEEecCCCEEEECCCCcEecccCCCeEE
Confidence            346788999999999999999999999999954  6999999999999999999998888655433

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=97.33  E-value=0.00099  Score=57.33  Aligned_cols=69  Identities=17%  Similarity=0.399  Sum_probs=49.6

Q ss_pred             EEEEEcCCCcCCCeec-CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce-EEEEEcCcc
Q 021654          216 AIVRFKAGSVEPAHHH-TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE-FFIKWDGRW  289 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H-~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~-~~i~~~~~~  289 (309)
                      .++++...   +.-|. ..+|..||++|++++.  .+|+++..+|||.+|||.|..=.+..++... +++.+...|
T Consensus        80 Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i~--~~G~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Yv~yPa~W  150 (152)
T PF06249_consen   80 GFMELEKT---SFPWTLTYDEIKYVLEGTLEIS--IDGQTVTAKPGDVIFIPKGSTITFSTPDYARFFYVTYPANW  150 (152)
T ss_dssp             EEEEEEEE---EEEEE-SSEEEEEEEEEEEEEE--ETTEEEEEETT-EEEE-TT-EEEEEEEEEEEEEEEEESTT-
T ss_pred             EEEEEeCC---CccEEeecceEEEEEEeEEEEE--ECCEEEEEcCCcEEEECCCCEEEEecCCCEEEEEEECCCcc
Confidence            67788763   34455 4567799999999995  5699999999999999999998887766544 345555555

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PLN00212 glutelin; Provisional

Probab=97.17  E-value=0.0026  Score=64.38  Aligned_cols=64  Identities=19%  Similarity=0.194  Sum_probs=52.2

Q ss_pred             EEEEEcCCCcCCCeecCCceE-EEEEecEEEEEEee-C-CeEE--EecCCcEEEECCCCeEEEEEcCCc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLT-K-GERF--DLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~-~-~~~~--~L~pGD~v~IP~g~~H~~~n~gd~  279 (309)
                      ..+.+.+|+..++|||+.... +||++|++.+.+.. . ...+  .|.+||.++||.|.+|..++..+.
T Consensus       351 ~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~eg  419 (493)
T PLN00212        351 TRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREG  419 (493)
T ss_pred             EEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCc
Confidence            568899999999999987666 99999999997642 2 2233  799999999999999987775443

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=96.95  E-value=0.0033  Score=53.79  Aligned_cols=70  Identities=20%  Similarity=0.409  Sum_probs=53.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce-EEEEEcCcc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE-FFIKWDGRW  289 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~-~~i~~~~~~  289 (309)
                      .+.++++ +..||- -..+|.-|||+|++.+.  .+|++...+|||.+|||.|..-.+.-++... +++.|...|
T Consensus       103 G~m~~~~-~tf~wt-l~yDe~d~VlEGrL~V~--~~g~tv~a~aGDvifiPKgssIefst~gea~flyvtyPanW  173 (176)
T COG4766         103 GLMEMKN-TTFPWT-LNYDEIDYVLEGRLHVR--IDGRTVIAGAGDVIFIPKGSSIEFSTTGEAKFLYVTYPANW  173 (176)
T ss_pred             ceeeecc-ccCcce-ecccceeEEEeeeEEEE--EcCCeEecCCCcEEEecCCCeEEEeccceEEEEEEEccccc
Confidence            4455555 444443 45778899999999995  5699999999999999999999888777644 456666656

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.91  E-value=0.0028  Score=59.87  Aligned_cols=68  Identities=25%  Similarity=0.323  Sum_probs=58.7

Q ss_pred             EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      ...++||-....|+|...-.+.|.+|+....  ++++++...+||++.+|+...|+..|.++..+++++.
T Consensus       265 mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~~--Ig~~rf~~~~~D~fvVPsW~~~~~~~gs~da~LFsfs  332 (351)
T COG3435         265 MQLLPPGFHGKAHRHTDSTIYHVVEGSGYTI--IGGERFDWSAGDIFVVPSWAWHEHVNGSEDAVLFSFS  332 (351)
T ss_pred             HHhcCCcccCCceeccCCEEEEEEecceeEE--ECCEEeeccCCCEEEccCcceeecccCCcceEEEecC
Confidence            4567889999999999999999999999994  5699999999999999999999999976666655443

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.87  E-value=0.0047  Score=53.82  Aligned_cols=56  Identities=20%  Similarity=0.179  Sum_probs=45.9

Q ss_pred             CCCeecCCceEEEEEecEEEEEEeeCC-eE--EEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          226 EPAHHHTFGHDLVVLQGKKSVWNLTKG-ER--FDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       226 ~p~H~H~~~e~vyVlsG~l~v~i~~~~-~~--~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      ...|.|...|.-|++.|.+.|.+...+ ..  ..+.+||.+.+|||+.|++.-+.+-.+
T Consensus        88 ~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~~~f  146 (181)
T COG1791          88 LQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTESPNF  146 (181)
T ss_pred             HHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCCCcE
Confidence            357999999999999999999776444 33  567899999999999999988765443

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=96.78  E-value=0.013  Score=51.54  Aligned_cols=78  Identities=15%  Similarity=0.142  Sum_probs=49.5

Q ss_pred             eEEEeeeCCCe--EEEEEcCCCcCCCeecCCce-EEEEEecEEEEEEe--eCC---------eEEEecCCcEEEECCCCe
Q 021654          205 SMKIIRESPTS--AIVRFKAGSVEPAHHHTFGH-DLVVLQGKKSVWNL--TKG---------ERFDLTVGDYLFTPAGDV  270 (309)
Q Consensus       205 ~~~il~~~~~~--~~~~l~pG~~~p~H~H~~~e-~vyVlsG~l~v~i~--~~~---------~~~~L~pGD~v~IP~g~~  270 (309)
                      .+.++..++..  .++.+.||..+|.|-|.... .+.|++|+++-...  .++         ....+.+|.....+++-.
T Consensus        65 ~r~ll~~~~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i  144 (175)
T PF05995_consen   65 TRNLLYRDERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGI  144 (175)
T ss_dssp             EEEEEEGGCT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBE
T ss_pred             eEEEEecCCCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCe
Confidence            34444444433  67899999999999998655 58899999886432  222         335577888888899999


Q ss_pred             EEEEEcC-CceEE
Q 021654          271 HRVKYYE-ETEFF  282 (309)
Q Consensus       271 H~~~n~g-d~~~~  282 (309)
                      |++.|.+ +.+.+
T Consensus       145 H~v~n~s~~~~av  157 (175)
T PF05995_consen  145 HRVENPSGDEPAV  157 (175)
T ss_dssp             EEEEES-SSS-EE
T ss_pred             EEeccCCCCCCEE
Confidence            9999987 55543

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=96.66  E-value=0.0042  Score=56.18  Aligned_cols=65  Identities=26%  Similarity=0.331  Sum_probs=57.1

Q ss_pred             EEEEEcCCCcCCC-eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          216 AIVRFKAGSVEPA-HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~-H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      .+++|.||..+|. ..|-.++-+|||+|+..+.+  ++..+.+++||++|+-+-.|....+.+...+.
T Consensus       185 ~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vYrL--n~dwv~V~aGD~mwm~A~cpQacyagG~g~fr  250 (264)
T COG3257         185 HIVSFEPGASIPYAETHVMEHGLYVLEGKGVYRL--NNNWVPVEAGDYIWMGAYCPQACYAGGRGAFR  250 (264)
T ss_pred             EEEEecCCcccchhhhhhhhcceEEEecceEEee--cCceEEeecccEEEeeccChhhhccCCCCceE
Confidence            6889999999985 67888888999999999954  58999999999999999999998888876664

>COG3806 ChrR Transcriptional activator [Transcription]

Probab=96.58  E-value=0.015  Score=51.82  Aligned_cols=93  Identities=23%  Similarity=0.208  Sum_probs=72.1

Q ss_pred             CCCeeecCCceEEEeee--CCC--eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCe
Q 021654          195 LNPVEMIPGGSMKIIRE--SPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDV  270 (309)
Q Consensus       195 ~~~~~~~pgg~~~il~~--~~~--~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~  270 (309)
                      +......+|+.+.-++-  ++.  ..++.+.+|..+|.|.|-..|.+.|++|...-.      .-.+.+||+..-+.++.
T Consensus       106 ~~~~W~~~G~rv~~v~l~~dds~~V~llki~~g~s~P~HtH~G~E~t~vl~G~~sde------~G~y~vgD~~~~d~~v~  179 (216)
T COG3806         106 GPWRWLGPGGRVEPVRLPTDDSRRVALLKIEPGRSFPDHTHVGIERTAVLEGAFSDE------NGEYLVGDFTLADGTVQ  179 (216)
T ss_pred             cceeeecCCcceeecccCCCCCceeEEEEeccCcccccccccceEEEEEEeeccccC------CCccccCceeecCCccc
Confidence            33455678887764432  222  377889999999999999999999999987752      22778999999999999


Q ss_pred             EE--EEEcCCceEEEEEcCcccccc
Q 021654          271 HR--VKYYEETEFFIKWDGRWDMFF  293 (309)
Q Consensus       271 H~--~~n~gd~~~~i~~~~~~~i~~  293 (309)
                      |+  ..-.+++.+++.|++...++.
T Consensus       180 H~piv~~~~eClcl~al~~~~~l~g  204 (216)
T COG3806         180 HSPIVLPPGECLCLAALDGPMMLYG  204 (216)
T ss_pred             cccccCCCCCceEEEEcCCCeEEEh
Confidence            98  556678888899998876654

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.42  E-value=0.0057  Score=53.02  Aligned_cols=54  Identities=24%  Similarity=0.220  Sum_probs=45.0

Q ss_pred             cCCCeecCCceEEEEEecEEEEEEeeCCe---EEEecCCcEEEECCCCeEEEEEcCC
Q 021654          225 VEPAHHHTFGHDLVVLQGKKSVWNLTKGE---RFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       225 ~~p~H~H~~~e~vyVlsG~l~v~i~~~~~---~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      ....|.|..+|.-|+++|+..+.+...++   +..+..||.+++|+|+-|||.-+.+
T Consensus        85 FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~  141 (179)
T KOG2107|consen   85 FFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPS  141 (179)
T ss_pred             HHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCch
Confidence            34689999999999999999997654343   3678999999999999999987654

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=96.38  E-value=0.017  Score=48.79  Aligned_cols=83  Identities=27%  Similarity=0.336  Sum_probs=55.6

Q ss_pred             CCcCCC-eecCCceE-EEEEecEEEEEEe-eCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE--cCc--cccccc-
Q 021654          223 GSVEPA-HHHTFGHD-LVVLQGKKSVWNL-TKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW--DGR--WDMFFD-  294 (309)
Q Consensus       223 G~~~p~-H~H~~~e~-vyVlsG~l~v~i~-~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~--~~~--~~i~~~-  294 (309)
                      |+.++. |+|...++ +.|+.|+..+.+. -++....+..||++.||+|+-|.-.. ....|.++-  .+.  |+|--- 
T Consensus        52 g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~rl~-sS~DF~VvGaYp~G~q~diqtg~  130 (163)
T COG4297          52 GGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCRLH-SSADFQVVGAYPPGQQADIQTGA  130 (163)
T ss_pred             ccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCccccccc-CCCCeEEEcccCCcccccccCCC
Confidence            344454 56888777 7899999999764 34678999999999999999996433 334444332  222  333222 


Q ss_pred             -hhHHHHHHHHhh
Q 021654          295 -EDLEAAKKAVEK  306 (309)
Q Consensus       295 -e~~~~~~~~~~~  306 (309)
                       .|+..|+++|..
T Consensus       131 ~t~~aear~~I~~  143 (163)
T COG4297         131 PTDLAEARARIKS  143 (163)
T ss_pred             CccHHHHHHHHHc
Confidence             346788888753

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=96.30  E-value=0.01  Score=55.34  Aligned_cols=48  Identities=19%  Similarity=0.281  Sum_probs=39.6

Q ss_pred             eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654          229 HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       229 H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      |.+....+.++++|++.++  ++++.+.+++||.+++||+++|.+....+
T Consensus        45 ~~~~~~~i~~~~~G~~~~~--~~~~~~~~~~g~~i~i~p~~~h~~~~~~~   92 (290)
T PRK10572         45 LGMKGYILNLTIRGQGVIF--NGGRAFVCRPGDLLLFPPGEIHHYGRHPD   92 (290)
T ss_pred             CCccceEEEEEEeccEEEe--cCCeeEecCCCCEEEECCCCceeeccCCC
Confidence            3344556689999999995  56999999999999999999999866544

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=95.99  E-value=0.08  Score=40.98  Aligned_cols=55  Identities=24%  Similarity=0.311  Sum_probs=41.5

Q ss_pred             CeecCCceE--EEEEecEEEEEEeeC-----CeEEEecCCcEEEECCCCeEEEEEcCC-ceEE
Q 021654          228 AHHHTFGHD--LVVLQGKKSVWNLTK-----GERFDLTVGDYLFTPAGDVHRVKYYEE-TEFF  282 (309)
Q Consensus       228 ~H~H~~~e~--vyVlsG~l~v~i~~~-----~~~~~L~pGD~v~IP~g~~H~~~n~gd-~~~~  282 (309)
                      .|.=..+.+  +.|++|++.+....+     .+...+.+|+..+|+|...|++...++ ..++
T Consensus        18 ~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~   80 (82)
T PF09313_consen   18 RHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQ   80 (82)
T ss_dssp             SBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEE
T ss_pred             hcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEEE
Confidence            444445555  889999999976544     477899999999999999999998886 6554

; PDB: 3BB6_C 3M70_A 3DL3_I.

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=95.63  E-value=0.05  Score=44.83  Aligned_cols=59  Identities=22%  Similarity=0.223  Sum_probs=45.0

Q ss_pred             EEEEEcCCCcCCCeec-CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654          216 AIVRFKAGSVEPAHHH-TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H-~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      .+..-.||.   ++++ +..|+.++|+|..+++ ..+++...+++||++++|+|..=.++-.+.
T Consensus        48 GiWe~TpG~---~r~~y~~~E~chil~G~v~~T-~d~Ge~v~~~aGD~~~~~~G~~g~W~V~Et  107 (116)
T COG3450          48 GIWECTPGK---FRVTYDEDEFCHILEGRVEVT-PDGGEPVEVRAGDSFVFPAGFKGTWEVLET  107 (116)
T ss_pred             eEEEecCcc---ceEEcccceEEEEEeeEEEEE-CCCCeEEEEcCCCEEEECCCCeEEEEEeee
Confidence            344445554   3443 3467799999999997 457899999999999999999987776553

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=95.51  E-value=0.081  Score=42.93  Aligned_cols=58  Identities=28%  Similarity=0.248  Sum_probs=46.2

Q ss_pred             CCcCCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECC--CCeEEEEEcCC-ceE
Q 021654          223 GSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPA--GDVHRVKYYEE-TEF  281 (309)
Q Consensus       223 G~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~--g~~H~~~n~gd-~~~  281 (309)
                      +...++|.|...|. .||++|+++-. ..-+....|.+|+.-|+-+  |+.|+-.|..+ .++
T Consensus        39 ~~gf~~HPH~g~eivTyv~~G~~~H~-Ds~G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~  100 (107)
T PF02678_consen   39 GAGFPMHPHRGFEIVTYVLEGELRHR-DSLGNRGVLRAGDVQWMTAGSGIVHSERNASDGGPL  100 (107)
T ss_dssp             TTEEEEEEECSEEEEEEEEESEEEEE-ETTSEEEEEETTEEEEEE-TTTEEEEEEE-TSSS-E
T ss_pred             CCCCCCcCCCCceEEEEEecCEEEEE-CCCCCeeEeCCCeEEEEeCCCCceEEEecCCCCCeE
Confidence            56779999999888 89999999975 5557788999999999886  57899999887 444

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]

Probab=95.51  E-value=0.047  Score=48.52  Aligned_cols=62  Identities=26%  Similarity=0.388  Sum_probs=43.0

Q ss_pred             EEEEEcCCCcCCCeecCCceE-----------------------------EEEEecEEEEEEeeCCeEEEecCCcEEEEC
Q 021654          216 AIVRFKAGSVEPAHHHTFGHD-----------------------------LVVLQGKKSVWNLTKGERFDLTVGDYLFTP  266 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~-----------------------------vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP  266 (309)
                      .++.+.+|+..|.|.|....+                             .+.+.|...-  ...+....|.||.++.+|
T Consensus        89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~--~~ag~~lkL~PGesitL~  166 (225)
T COG3822          89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQT--HTAGSQLKLSPGESITLP  166 (225)
T ss_pred             eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEE--eccceeEEECCCCcEecC
Confidence            567788899999999983322                             1122222221  122455789999999999


Q ss_pred             CCCeEEEEEcCCc
Q 021654          267 AGDVHRVKYYEET  279 (309)
Q Consensus       267 ~g~~H~~~n~gd~  279 (309)
                      ||+-|+|++.+..
T Consensus       167 Pg~~HsFwae~g~  179 (225)
T COG3822         167 PGLYHSFWAEEGG  179 (225)
T ss_pred             CCceeeeeecCCc
Confidence            9999999997654

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=95.42  E-value=0.11  Score=49.88  Aligned_cols=58  Identities=21%  Similarity=0.182  Sum_probs=41.6

Q ss_pred             EcCCC--cCCCeecCCceEEEEEecEEEEEEee---------------------CCeEEEecCCcEEEECCCCeEEEEEc
Q 021654          220 FKAGS--VEPAHHHTFGHDLVVLQGKKSVWNLT---------------------KGERFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       220 l~pG~--~~p~H~H~~~e~vyVlsG~l~v~i~~---------------------~~~~~~L~pGD~v~IP~g~~H~~~n~  276 (309)
                      +.|++  ..++|+-+.+-+++=+.|+-+.++..                     ....++|.|||.+|+|+|.+|...+.
T Consensus       120 ~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~  199 (319)
T PF08007_consen  120 LTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTT  199 (319)
T ss_dssp             EETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEES
T ss_pred             ecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCC
Confidence            45555  78899988888888899999887642                     12369999999999999999999998


Q ss_pred             C
Q 021654          277 E  277 (309)
Q Consensus       277 g  277 (309)
                      +
T Consensus       200 ~  200 (319)
T PF08007_consen  200 D  200 (319)
T ss_dssp             S
T ss_pred             C
Confidence            8

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length

Probab=95.30  E-value=0.069  Score=48.61  Aligned_cols=64  Identities=20%  Similarity=0.260  Sum_probs=38.1

Q ss_pred             EEEEEcCCCcCCCeecCCceE-EEEEe-cEEEEEEe-----------------e--------CCeEEEecCCcEEEECCC
Q 021654          216 AIVRFKAGSVEPAHHHTFGHD-LVVLQ-GKKSVWNL-----------------T--------KGERFDLTVGDYLFTPAG  268 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~-vyVls-G~l~v~i~-----------------~--------~~~~~~L~pGD~v~IP~g  268 (309)
                      .++.+.+|+..|.|.|..-.+ +...- |.+.+++.                 .        .+....|.||+++.++||
T Consensus        90 Kim~~~~~Q~tP~H~H~~K~EDIINRGGG~L~i~l~~s~~~~~~~~~~~v~V~~DG~~~t~~aG~~l~L~PGESiTL~Pg  169 (225)
T PF07385_consen   90 KIMIVREGQVTPMHFHWKKMEDIINRGGGNLVIELYNSDPDGELDADTDVTVPVDGIRRTVPAGTQLRLNPGESITLPPG  169 (225)
T ss_dssp             EEEEE-BT-EEEEEEESS--EEEEEEEES-EEEEEEEB--TTSSB-SS-EEEEETTEEEEE-TT-EEEE-TT-EEEE-TT
T ss_pred             hheeccCCCcCCcccCcchhhheeecCCceEEEEEEeccCCCccccCCCeEEecCCcEEEecCCceEEeCCCCeEeeCCC
Confidence            456677888888888876555 44443 34433331                 1        244578899999999999


Q ss_pred             CeEEEEEcCCc
Q 021654          269 DVHRVKYYEET  279 (309)
Q Consensus       269 ~~H~~~n~gd~  279 (309)
                      .-|+|+..+..
T Consensus       170 ~yH~Fw~e~g~  180 (225)
T PF07385_consen  170 IYHWFWGEGGD  180 (225)
T ss_dssp             EEEEEEE-TTS
T ss_pred             CeeeEEecCCC
Confidence            99999998766

The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=94.98  E-value=0.52  Score=39.76  Aligned_cols=129  Identities=14%  Similarity=0.079  Sum_probs=79.2

Q ss_pred             CCcEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654           11 HPLKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        11 ~~mki~i~~---D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN   87 (309)
                      ++.||++++   |.-...+ ..+...|+.+||+|+|+|.+-.++   .+.+.+.+    ...+.-.+-|-.+..+..+  
T Consensus         2 ~~~~vl~~~~~gD~H~lG~-~iv~~~lr~~G~eVi~LG~~vp~e---~i~~~a~~----~~~d~V~lS~~~~~~~~~~--   71 (137)
T PRK02261          2 KKKTVVLGVIGADCHAVGN-KILDRALTEAGFEVINLGVMTSQE---EFIDAAIE----TDADAILVSSLYGHGEIDC--   71 (137)
T ss_pred             CCCEEEEEeCCCChhHHHH-HHHHHHHHHCCCEEEECCCCCCHH---HHHHHHHH----cCCCEEEEcCccccCHHHH--
Confidence            356787774   4444444 577788999999999999864432   33334443    3455544444444333222  


Q ss_pred             CCCceEEEEeCCHHHHHHhHhh--cCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhccc
Q 021654           88 KNPGVFATTCLTPADALNTRSI--NNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMT  164 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~h--N~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~sl~  164 (309)
                                  .....+-|+.  .+..|++=|.-++++....++.+.+.+-.|+.-||.+..-   ++|.+|+++.++
T Consensus        72 ------------~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~---~~i~~~l~~~~~  135 (137)
T PRK02261         72 ------------RGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDP---EEAIDDLKKDLN  135 (137)
T ss_pred             ------------HHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCH---HHHHHHHHHHhc
Confidence                        1222333343  2443444444467888888888888888898888877743   678888877553

>PF12852 Cupin_6: Cupin

Probab=94.84  E-value=0.11  Score=45.29  Aligned_cols=45  Identities=27%  Similarity=0.331  Sum_probs=36.8

Q ss_pred             ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654          234 GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       234 ~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      ..+.+|++|+..+.+..++....|.+||.+++|.|.+|.+....+
T Consensus        36 ~~fh~V~~G~~~l~~~~~~~~~~L~~GDivllp~g~~H~l~~~~~   80 (186)
T PF12852_consen   36 ASFHVVLRGSCWLRVPGGGEPIRLEAGDIVLLPRGTAHVLSSDPD   80 (186)
T ss_pred             eEEEEEECCeEEEEEcCCCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence            556899999999965422588999999999999999999965444

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=94.62  E-value=0.24  Score=44.39  Aligned_cols=56  Identities=29%  Similarity=0.352  Sum_probs=38.6

Q ss_pred             cCCCcCCCeecCCceEEEEEecEEEEEEe-----------e---------------------------CCeEEEecCCcE
Q 021654          221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNL-----------T---------------------------KGERFDLTVGDY  262 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~-----------~---------------------------~~~~~~L~pGD~  262 (309)
                      .+|+.+++|.....-++.++.|+-++.+.           .                           ..-+.+|+|||.
T Consensus       139 ~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~pGD~  218 (251)
T PF13621_consen  139 PPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEPGDV  218 (251)
T ss_dssp             -TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEETT-E
T ss_pred             CCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECCCeE
Confidence            44667777777766667778888777652           0                           124588999999


Q ss_pred             EEECCCCeEEEEEc
Q 021654          263 LFTPAGDVHRVKYY  276 (309)
Q Consensus       263 v~IP~g~~H~~~n~  276 (309)
                      +|||+|-.|.+.|.
T Consensus       219 LfiP~gWwH~V~~~  232 (251)
T PF13621_consen  219 LFIPPGWWHQVENL  232 (251)
T ss_dssp             EEE-TT-EEEEEES
T ss_pred             EEECCCCeEEEEEc
Confidence            99999999999999

...

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=94.55  E-value=0.11  Score=45.68  Aligned_cols=66  Identities=15%  Similarity=0.118  Sum_probs=48.3

Q ss_pred             CCCcCCCeecCCc--eEEEEEecEEEEEEe---eCC------eEEEecCC--cEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654          222 AGSVEPAHHHTFG--HDLVVLQGKKSVWNL---TKG------ERFDLTVG--DYLFTPAGDVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       222 pG~~~p~H~H~~~--e~vyVlsG~l~v~i~---~~~------~~~~L~pG--D~v~IP~g~~H~~~n~gd~~~~i~~~~  287 (309)
                      +|....+|+|...  +.+.|++|++.....   .+.      ....|.+.  ..+|||+|..|.+.+.++...++.+..
T Consensus        54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~~  132 (173)
T COG1898          54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKVT  132 (173)
T ss_pred             CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEec
Confidence            7777889998655  458999999987442   111      12455554  799999999999999998876555443

>COG1741 Pirin-related protein [General function prediction only]

Probab=94.37  E-value=0.09  Score=49.60  Aligned_cols=57  Identities=25%  Similarity=0.197  Sum_probs=49.3

Q ss_pred             EEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECC--CCeEEEEEc
Q 021654          219 RFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPA--GDVHRVKYY  276 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~--g~~H~~~n~  276 (309)
                      .+.||...++|.|...|. .||++|+++-+ +..+..-.+.|||.-|+-+  |+.|+-.|.
T Consensus        50 ~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr-DS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~  109 (276)
T COG1741          50 VLAPGRGFPPHPHRGLETVTYVLDGEIEHR-DSLGNKGVIRPGDVQWMTAGSGIVHSEMNP  109 (276)
T ss_pred             cccCCCcCCCCCCCCcEEEEEEEccEEEEe-ecCCceeeecccceeEEcCCCceeecccCC
Confidence            477899999999999998 89999999985 4456788999999999987  578998886

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=94.36  E-value=0.16  Score=47.40  Aligned_cols=47  Identities=15%  Similarity=0.120  Sum_probs=38.8

Q ss_pred             ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          234 GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       234 ~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      ...+++++|.+.+.  .+++.+.+.|||.+++|++.+|.+...++...+
T Consensus        72 ~~l~~~~~G~~~~~--~~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~~~  118 (302)
T PRK09685         72 FFTVFQLSGHAIIE--QDDRQVQLAAGDITLIDASRPCSIYPQGLSEQI  118 (302)
T ss_pred             EEEEEEecceEEEE--ECCeEEEEcCCCEEEEECCCCcEeecCCCceeE
Confidence            34578899999995  569999999999999999999998776655443

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit

Probab=93.96  E-value=0.68  Score=39.09  Aligned_cols=113  Identities=12%  Similarity=0.078  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHh
Q 021654           27 KDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNT  106 (309)
Q Consensus        27 k~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~giraa~~~~~~~A~~~  106 (309)
                      |+.+...|++.||+|+|+|.+--+   .++.+++.+    ...+  ++..++=+|-.+..  +          .....+.
T Consensus        18 k~iv~~~l~~~GfeVi~LG~~v~~---e~~v~aa~~----~~ad--iVglS~l~~~~~~~--~----------~~~~~~l   76 (134)
T TIGR01501        18 NKILDHAFTNAGFNVVNLGVLSPQ---EEFIKAAIE----TKAD--AILVSSLYGHGEID--C----------KGLRQKC   76 (134)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCH---HHHHHHHHH----cCCC--EEEEecccccCHHH--H----------HHHHHHH
Confidence            588889999999999999975433   344444444    2222  22222212222210  0          1233444


Q ss_pred             HhhcCceE-eEeccc-cCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhcc
Q 021654          107 RSINNCNV-LAVSGM-STSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSM  163 (309)
Q Consensus       107 r~hN~aNv-l~lg~~-~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~sl  163 (309)
                      |+.+-.++ +.+|+. +++++...+..+.+.+..|+.-|+++..   +++|.+|+++.|
T Consensus        77 ~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~---~~~iv~~l~~~~  132 (134)
T TIGR01501        77 DEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTP---PEVVIADLKKDL  132 (134)
T ss_pred             HHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCC---HHHHHHHHHHHh
Confidence            55443344 446665 6788888777778888889888888773   377888888765

This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.

>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS

Probab=93.85  E-value=0.14  Score=40.85  Aligned_cols=77  Identities=21%  Similarity=0.320  Sum_probs=54.3

Q ss_pred             HHHHHHhhcCCCCCCCceEEEEecCc-hhhhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHH
Q 021654           54 AEVGRRVSSSDSSDTTTRGLVACGTG-VGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILD  132 (309)
Q Consensus        54 ~~va~~v~~~~~~~~~~~gi~~CgtG-~G~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~  132 (309)
                      .++..-+.+    ..+|+||-+|||| .|.-+|.||+ |--|-.---.-++-.+.-.+.+|||-+|-. =-+|+.+.+++
T Consensus        36 mklGdvM~~----e~Ad~GiSFCGSGGAGAitA~tKy-gy~~~~gmRSv~~GvTAi~~G~~VlGFGFm-D~EeLG~rlve  109 (115)
T PF14272_consen   36 MKLGDVMKK----ENADFGISFCGSGGAGAITAQTKY-GYKARHGMRSVDEGVTAINEGKKVLGFGFM-DKEELGRRLVE  109 (115)
T ss_pred             chHHHHHHh----hCCCcceEEecCCCccceeecccc-CCchhcCccchhhhHHHHHcCCeEEeeccc-cHHHHHHHHHH
Confidence            467777776    7899999999996 5666677776 433333333345666667788999888743 23667788999


Q ss_pred             HHHc
Q 021654          133 TWLK  136 (309)
Q Consensus       133 ~~l~  136 (309)
                      +|..
T Consensus       110 ~~~k  113 (115)
T PF14272_consen  110 AYIK  113 (115)
T ss_pred             HHHh
Confidence            9975

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=93.28  E-value=0.64  Score=37.07  Aligned_cols=84  Identities=23%  Similarity=0.257  Sum_probs=51.9

Q ss_pred             EEEcCCCcCCCe-ecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEc-CCceEE----------EEE
Q 021654          218 VRFKAGSVEPAH-HHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY-EETEFF----------IKW  285 (309)
Q Consensus       218 ~~l~pG~~~p~H-~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~-gd~~~~----------i~~  285 (309)
                      ++++||+..... ...+.-++||++|.+++  +  ++...+.+|+.+++..+..=.+.+. .+..++          +.+
T Consensus         4 i~l~~g~~~~~~~~~~~~~~iyv~~G~~~v--~--~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~GePl~Epi~~   79 (104)
T PF05726_consen    4 IKLEPGASFTLPLPPGHNAFIYVLEGSVEV--G--GEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLLGGEPLNEPIVQ   79 (104)
T ss_dssp             EEE-TT-EEEEEEETT-EEEEEEEESEEEE--T--TTTEEEETTEEEEE-SECEEEEEESSSSEEEEEEEE----S--EE
T ss_pred             EEECCCCEEEeecCCCCEEEEEEEECcEEE--C--CCcceECCCcEEEECCCceEEEEECCCCcEEEEEEccCCCCCEEE
Confidence            456666665333 22345569999999988  4  4447899999999998877778887 455543          233


Q ss_pred             cCccccccchhHHHHHHHHh
Q 021654          286 DGRWDMFFDEDLEAAKKAVE  305 (309)
Q Consensus       286 ~~~~~i~~~e~~~~~~~~~~  305 (309)
                      -|+...--.+++..|.+.-+
T Consensus        80 ~GpFVmnt~eeI~qA~~dy~   99 (104)
T PF05726_consen   80 YGPFVMNTREEIEQAFEDYQ   99 (104)
T ss_dssp             ETTEEESSHHHHHHHHHHHH
T ss_pred             ECCcccCCHHHHHHHHHHHH
Confidence            44444555566666665543

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=92.98  E-value=0.23  Score=36.37  Aligned_cols=55  Identities=18%  Similarity=0.182  Sum_probs=40.4

Q ss_pred             EEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEE
Q 021654          218 VRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRV  273 (309)
Q Consensus       218 ~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~  273 (309)
                      +++.||....++... ...+.|.+|.+-++...+.+.+.|.|||.+.++++..=-+
T Consensus         2 ~~L~~g~~~~lr~~~-~~~l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl   56 (63)
T PF11142_consen    2 FELAPGETLSLRAAA-GQRLRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVL   56 (63)
T ss_pred             EEeCCCceEEeEcCC-CcEEEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEE
Confidence            456677766666554 4448999999988755445679999999999998875433

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=92.85  E-value=0.57  Score=41.34  Aligned_cols=62  Identities=21%  Similarity=0.224  Sum_probs=45.6

Q ss_pred             cCCCcCCCeec---CCceEEEEEecEEEEEEeeC-------C--eEEEecC--CcEEEECCCCeEEEEEcCCceEE
Q 021654          221 KAGSVEPAHHH---TFGHDLVVLQGKKSVWNLTK-------G--ERFDLTV--GDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       221 ~pG~~~p~H~H---~~~e~vyVlsG~l~v~i~~~-------~--~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      .+|....+|.|   .+...+.|++|++...+..-       +  ....|.+  +..+|||+|..|.+.+.++...+
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v  127 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEF  127 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEE
Confidence            45777788887   36777999999999744211       1  1466776  55999999999999998865443

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=92.85  E-value=0.14  Score=40.52  Aligned_cols=29  Identities=28%  Similarity=0.479  Sum_probs=22.6

Q ss_pred             eEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          253 ERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       253 ~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      .+.+.+|||++++|||..|.+.|.+++..
T Consensus        81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~  109 (114)
T PF02373_consen   81 YRFVQKPGEFVFIPPGAYHQVFNLGDNIS  109 (114)
T ss_dssp             EEEEEETT-EEEE-TT-EEEEEESSSEEE
T ss_pred             ccceECCCCEEEECCCceEEEEeCCceEE
Confidence            46788999999999999999999997643

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=92.83  E-value=0.97  Score=39.83  Aligned_cols=62  Identities=19%  Similarity=0.251  Sum_probs=45.0

Q ss_pred             cCCCcCCCeecCCc----eEEEEEecEEEEEEee-------CC--eEEEecCCc--EEEECCCCeEEEEEcCCceEE
Q 021654          221 KAGSVEPAHHHTFG----HDLVVLQGKKSVWNLT-------KG--ERFDLTVGD--YLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       221 ~pG~~~p~H~H~~~----e~vyVlsG~l~v~i~~-------~~--~~~~L~pGD--~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      .+|....+|.|...    ..+.|++|++...+..       -+  ..+.|.+++  .+|||+|+.|.+.+.++...+
T Consensus        51 ~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v  127 (176)
T PF00908_consen   51 KKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEV  127 (176)
T ss_dssp             ETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEE
T ss_pred             cccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEE
Confidence            34777788987653    5699999999875421       02  246777776  799999999999999976544

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=92.05  E-value=0.59  Score=46.63  Aligned_cols=53  Identities=25%  Similarity=0.255  Sum_probs=38.0

Q ss_pred             cCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          231 HTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       231 H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      ...++.+++-+|++++  .++=....+.|||+++||.|+.+++.-.+....+++=
T Consensus       144 aDGD~Li~~q~G~l~l--~Te~G~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E  196 (424)
T PF04209_consen  144 ADGDELIFPQQGSLRL--ETEFGRLDVRPGDYVVIPRGTRFRVELPGPARGYIIE  196 (424)
T ss_dssp             SSEEEEEEEEES-EEE--EETTEEEEE-TTEEEEE-TT--EEEE-SSSEEEEEEE
T ss_pred             CCCCEEEEEEECCEEE--EecCeeEEEcCCeEEEECCeeEEEEEeCCCceEEEEE
Confidence            4555569999999999  4556789999999999999999999888777766553

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=91.39  E-value=0.43  Score=41.29  Aligned_cols=66  Identities=12%  Similarity=0.089  Sum_probs=43.5

Q ss_pred             EEEEEcCCCcCCCeecCCce-----EEEEE-ecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGH-----DLVVL-QGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e-----~vyVl-sG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      .+..+.||+.+.+|.-+..-     +-.++ .....+  .++++.+..++|.++++....+|...|.++.+-++
T Consensus        83 ~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~--~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~Rv~  154 (163)
T PF05118_consen   83 RFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYI--RVGGETRHWREGECWVFDDSFEHEVWNNGDEDRVV  154 (163)
T ss_dssp             EEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEE--EETTEEEB--CTEEEEE-TTS-EEEEESSSS-EEE
T ss_pred             EEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEE--EECCeEEEeccCcEEEEeCCEEEEEEeCCCCCEEE
Confidence            45688999999999876432     22223 244555  56799999999999999999999999998766443

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=91.29  E-value=1.6  Score=41.48  Aligned_cols=50  Identities=24%  Similarity=0.253  Sum_probs=37.1

Q ss_pred             cCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          231 HTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       231 H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      +.....++|++|.+++.  .++.++.|++|++++||++...... .++..+++
T Consensus       251 ~~~~~il~v~~G~~~i~--~~~~~~~l~~G~~~~ipa~~~~~~i-~g~~~~~~  300 (302)
T TIGR00218       251 QQSALILSVLEGSGRIK--SGGKTLPLKKGESFFIPAHLGPFTI-EGECEAIV  300 (302)
T ss_pred             CCCcEEEEEEcceEEEE--ECCEEEEEecccEEEEccCCccEEE-EeeEEEEE
Confidence            44566789999999994  4678899999999999999854333 24445443

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911

Probab=91.27  E-value=0.51  Score=37.61  Aligned_cols=76  Identities=21%  Similarity=0.298  Sum_probs=52.0

Q ss_pred             HHHHHHhhcCCCCCCCceEEEEecCc-hhhhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCC-HHHHHHHH
Q 021654           54 AEVGRRVSSSDSSDTTTRGLVACGTG-VGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTS-KESAVEIL  131 (309)
Q Consensus        54 ~~va~~v~~~~~~~~~~~gi~~CgtG-~G~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~-~~~a~~i~  131 (309)
                      .++..-+.+    ..+|+||-+|||| .|.-+|-||+ |-.|-.---.-++-.+.-...+|||-+|-  .. +|+.+.++
T Consensus        36 mklGdVM~~----e~Ad~GiSFCGSGGAGAitAqtky-Gyk~~~gmRSveeGvTAi~eG~~VlGFGF--mD~EeLG~rlv  108 (115)
T TIGR03577        36 MKLGDVMKQ----ENADLGISFCGSGGAGAITAQTKY-GYKARYGMRSVEEGVTAINEGKNVLGFGF--MDKEELGKRLT  108 (115)
T ss_pred             chHHHHHhh----hcCccceEEecCCCccceeecccc-CCccccCccchhhhHHHHhcCCeEEeecc--ccHHHHHHHHH
Confidence            466666666    6889999999997 4556666776 54444433334445555557788887764  44 56778899


Q ss_pred             HHHHc
Q 021654          132 DTWLK  136 (309)
Q Consensus       132 ~~~l~  136 (309)
                      ++|..
T Consensus       109 ea~~k  113 (115)
T TIGR03577       109 EAFLK  113 (115)
T ss_pred             HHHHh
Confidence            99975

Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=91.17  E-value=1.2  Score=37.23  Aligned_cols=47  Identities=17%  Similarity=0.272  Sum_probs=39.7

Q ss_pred             ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          234 GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       234 ~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      .-..+.++|...+.  .+++...+.||+.++++++.++++...++...+
T Consensus        56 ~~l~~~~~G~~~~~--~~g~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~  102 (172)
T PF14525_consen   56 YLLVLPLSGSARIE--QGGREVELAPGDVVLLDPGQPYRLEFSAGCRQL  102 (172)
T ss_pred             EEEEEEccCCEEEE--ECCEEEEEcCCeEEEEcCCCCEEEEECCCccEE
Confidence            33478899999994  569999999999999999999999988766654

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=90.41  E-value=0.59  Score=42.37  Aligned_cols=59  Identities=15%  Similarity=0.151  Sum_probs=46.8

Q ss_pred             EEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eEEEecCCcEEEECCCCeEEEEEcC
Q 021654          219 RFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~~~L~pGD~v~IP~g~~H~~~n~g  277 (309)
                      .--|+.....|--+..|++|-++|.+.+.+...+  +...++.||.+.+|+.++|+..-..
T Consensus        39 VGGPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFa   99 (279)
T KOG3995|consen   39 VGGPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFA   99 (279)
T ss_pred             ecCCCcccccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhc
Confidence            3346777788999999999999999998654222  4588999999999999999754433

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=90.09  E-value=1.4  Score=41.17  Aligned_cols=67  Identities=25%  Similarity=0.321  Sum_probs=46.9

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC-eEEEecCC--------cEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG-ERFDLTVG--------DYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~-~~~~L~pG--------D~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..+++++|.....-....+--++.|+|.+++.+  ++ +.+.|..-        |++|+|.|..=.+.+.++.++.+.
T Consensus        30 ~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~--~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~  105 (261)
T PF04962_consen   30 GVLRLEAGESLEFELERRELGVVNLGGKATVTV--DGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVC  105 (261)
T ss_dssp             CCEEEECCHCCCCCCCSEEEEEEEESSSEEEEE--TTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEE
T ss_pred             EEEEecCCCEEeccCCCcEEEEEEeCCEEEEEe--CCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEE
Confidence            346778877665553333333889999999954  56 78888888        999999999999999888777654

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=89.99  E-value=0.81  Score=44.64  Aligned_cols=60  Identities=20%  Similarity=0.191  Sum_probs=45.9

Q ss_pred             EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC-CeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654          217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~-~~~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      ..++++|...-.-.-+..-.+.|++|+.++.  ++ +....+++||.+|||++.+-.+...++
T Consensus       337 ~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~--~~t~~~~~v~rG~V~fI~a~~~i~~~~~sd  397 (411)
T KOG2757|consen  337 ETKVPTGESYKFPGVDGPSILLVLKGSGILK--TDTDSKILVNRGDVLFIPANHPIHLSSSSD  397 (411)
T ss_pred             EeecCCCceEEeecCCCceEEEEEecceEEe--cCCCCceeeccCcEEEEcCCCCceeeccCc
Confidence            3455565554445556677899999999994  44 788999999999999998887766554

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=89.92  E-value=0.72  Score=43.28  Aligned_cols=64  Identities=19%  Similarity=0.274  Sum_probs=44.4

Q ss_pred             CCCcCCCeecCCceE--EEEEecEEEEEEeeCCe----EEEecC-CcEEEECCCCeEEEEEc-CCceEEEEE
Q 021654          222 AGSVEPAHHHTFGHD--LVVLQGKKSVWNLTKGE----RFDLTV-GDYLFTPAGDVHRVKYY-EETEFFIKW  285 (309)
Q Consensus       222 pG~~~p~H~H~~~e~--vyVlsG~l~v~i~~~~~----~~~L~p-GD~v~IP~g~~H~~~n~-gd~~~~i~~  285 (309)
                      |++....|.|..+.+  +.|++|++.+.+..++.    ...+.| +..-++||+..|++... ++..+.+.+
T Consensus        20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~f   91 (287)
T PRK12335         20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSF   91 (287)
T ss_pred             hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEE
Confidence            566777898864444  89999999996542222    134555 45657999999999888 467766443

>PHA00672 hypothetical protein

Probab=89.63  E-value=1.7  Score=36.43  Aligned_cols=82  Identities=18%  Similarity=0.237  Sum_probs=62.9

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcCccccccch
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDE  295 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~~~i~~~e  295 (309)
                      ..++++.|....--.|..+.+ .+++|..++  .+|++...|..-..+--|||....+.+..|+...       .+|..+
T Consensus        50 Rei~IPkGt~LtG~~hkf~~~-ii~sG~itV--~tdge~~rl~g~~~i~~~aG~KragyAHeDT~wt-------~~h~se  119 (152)
T PHA00672         50 RTIRIPAGVALTGALIKVSTV-LIFSGHATV--FIGGEAVELRGYHVIPASAGRKQAFVAHADTDLT-------MLFPSE  119 (152)
T ss_pred             EEEeccCceeeeeeeeEeeEE-EEecccEEE--EeCCcEEEEecceeeecCCCcccceeeeccceEE-------EEeccc
Confidence            456778888776677877777 889999999  5678999998888899999999999998888865       445555


Q ss_pred             h--HHHHHHHHhhh
Q 021654          296 D--LEAAKKAVEKE  307 (309)
Q Consensus       296 ~--~~~~~~~~~~~  307 (309)
                      +  +.+|.+.++.|
T Consensus       120 er~v~~a~a~~~~~  133 (152)
T PHA00672        120 ARSVAEAEAEFTDE  133 (152)
T ss_pred             cccHHHHHhhcccH
Confidence            4  56666665543

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=89.34  E-value=1.4  Score=44.02  Aligned_cols=53  Identities=21%  Similarity=0.127  Sum_probs=43.1

Q ss_pred             ecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          230 HHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       230 ~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      -++.++++++-+|.+.+.  ++=....+.|||+++||.|+.+++.-.+....+|+
T Consensus       145 NaDGD~Livpq~G~l~i~--TEfG~L~v~pgei~VIPRG~~frv~l~gp~rgyi~  197 (429)
T TIGR01015       145 NADGDFLIVPQQGALLIT--TEFGRLLVEPNEICVIPRGVRFRVTVLEPARGYIC  197 (429)
T ss_pred             ccCCCEEEEEEeCcEEEE--EeccceEecCCCEEEecCccEEEEeeCCCceEEEE
Confidence            456667799999999994  34567899999999999999999987776666554

Missing in human disease alkaptonuria.

>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine

Probab=88.64  E-value=2.6  Score=38.00  Aligned_cols=67  Identities=21%  Similarity=0.249  Sum_probs=47.3

Q ss_pred             EEEEEcCCCcCCCeecCCceE-EEEEecEEEEEEee--C---Ce------E---------EEecCCc-EEEECCC--CeE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLT--K---GE------R---------FDLTVGD-YLFTPAG--DVH  271 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~--~---~~------~---------~~L~pGD-~v~IP~g--~~H  271 (309)
                      .+|.+++|..+|+|-|+...- .-||.|++.++...  +   +.      .         ....+++ ++..|..  -.|
T Consensus        47 ~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~ggNiH  126 (200)
T PF07847_consen   47 GIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTSGGNIH  126 (200)
T ss_pred             EEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCCCCeeE
Confidence            788999999999999999887 66999999995421  1   00      0         0122333 5556654  899


Q ss_pred             EEEEcC-CceEE
Q 021654          272 RVKYYE-ETEFF  282 (309)
Q Consensus       272 ~~~n~g-d~~~~  282 (309)
                      ++.+.+ .+.++
T Consensus       127 ~f~a~~~p~Afl  138 (200)
T PF07847_consen  127 EFTALTGPCAFL  138 (200)
T ss_pred             EEEeCCCCeEEE
Confidence            999998 55555

Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process

>PRK10579 hypothetical protein; Provisional

Probab=88.55  E-value=3.4  Score=32.78  Aligned_cols=49  Identities=14%  Similarity=0.179  Sum_probs=40.0

Q ss_pred             CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          233 FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       233 ~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      ..|..-|++|++++.+...++.....+|+.+.+|++..-.++....+..
T Consensus        41 ~~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~t~Y   89 (94)
T PRK10579         41 EPEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEPTSY   89 (94)
T ss_pred             CcEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEECcceee
Confidence            4567899999999976544456799999999999999999888765544

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=88.42  E-value=3.1  Score=33.01  Aligned_cols=50  Identities=22%  Similarity=0.237  Sum_probs=36.6

Q ss_pred             CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          233 FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       233 ~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      ..|..-|++|.+++.+-..++.....+|+++-+|++..-.++....+..+
T Consensus        41 ~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~~Y~   90 (94)
T PF06865_consen   41 APERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPTAYL   90 (94)
T ss_dssp             S-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-EEEE
T ss_pred             CCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECcceeeE
Confidence            45679999999999875444578899999999999999999987665543

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain

Probab=87.84  E-value=7  Score=31.83  Aligned_cols=102  Identities=11%  Similarity=0.037  Sum_probs=57.9

Q ss_pred             HHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCc-hhhhhhhcCCCceEEEEeCCHHHHHHh
Q 021654           28 DALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTG-VGVAIFANKNPGVFATTCLTPADALNT  106 (309)
Q Consensus        28 ~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG-~G~~iaaNK~~giraa~~~~~~~A~~~  106 (309)
                      +.+..+|+..||+|+++|.+..++   .+.+.+.+    .. -..|.+|++= .-+..    +          ...++..
T Consensus        17 ~~~~~~l~~~G~~vi~lG~~vp~e---~~~~~a~~----~~-~d~V~iS~~~~~~~~~----~----------~~~~~~L   74 (122)
T cd02071          17 KVIARALRDAGFEVIYTGLRQTPE---EIVEAAIQ----ED-VDVIGLSSLSGGHMTL----F----------PEVIELL   74 (122)
T ss_pred             HHHHHHHHHCCCEEEECCCCCCHH---HHHHHHHH----cC-CCEEEEcccchhhHHH----H----------HHHHHHH
Confidence            667778999999999999875444   33333333    22 3477777662 11110    0          2233333


Q ss_pred             Hhh-cCceE-eEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhh
Q 021654          107 RSI-NNCNV-LAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFD  160 (309)
Q Consensus       107 r~h-N~aNv-l~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~  160 (309)
                      |+- ++ ++ +.+|++..     .+..+.|.+.-|+.-++.+...   +.+..|++
T Consensus        75 ~~~~~~-~i~i~~GG~~~-----~~~~~~~~~~G~d~~~~~~~~~---~~~~~~~~  121 (122)
T cd02071          75 RELGAG-DILVVGGGIIP-----PEDYELLKEMGVAEIFGPGTSI---EEIIDKIR  121 (122)
T ss_pred             HhcCCC-CCEEEEECCCC-----HHHHHHHHHCCCCEEECCCCCH---HHHHHHHh
Confidence            443 33 43 45666532     3446778888887777666533   44555554

This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=87.77  E-value=3.4  Score=39.04  Aligned_cols=56  Identities=20%  Similarity=0.235  Sum_probs=39.8

Q ss_pred             EEEEcCCCcCCCee-cCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEE
Q 021654          217 IVRFKAGSVEPAHH-HTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK  274 (309)
Q Consensus       217 ~~~l~pG~~~p~H~-H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~  274 (309)
                      -+.++.+....... =...|. ++.|.|++++.  ++++++.|.+.|++|+|.|..-...
T Consensus        56 ~l~l~~~~~~~~~~fl~rrE~giV~lgG~~~V~--vdG~~~~l~~~d~LYVp~G~~~v~~  113 (276)
T PRK00924         56 PLKLEAGKQLGVSYFLERRELGIINIGGAGTVT--VDGETYELGHRDALYVGKGAKEVVF  113 (276)
T ss_pred             ceecccCccccceeecCCcEEEEEEccceEEEE--ECCEEEecCCCcEEEECCCCcEEEE
Confidence            34454444443333 344555 88999999995  5699999999999999999875444

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)

Probab=87.37  E-value=11  Score=31.64  Aligned_cols=100  Identities=11%  Similarity=0.077  Sum_probs=58.2

Q ss_pred             HHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHh
Q 021654           27 KDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNT  106 (309)
Q Consensus        27 k~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~~giraa~~~~~~~A~~~  106 (309)
                      |+.+...|+..||||+|+|.+-.++   .+.+++.+    ..++ .|.+ ++=+|-.|     +.+       .....+-
T Consensus        16 kniv~~~L~~~GfeVidLG~~v~~e---~~v~aa~~----~~ad-iVgl-S~L~t~~~-----~~~-------~~~~~~l   74 (128)
T cd02072          16 NKILDHAFTEAGFNVVNLGVLSPQE---EFIDAAIE----TDAD-AILV-SSLYGHGE-----IDC-------KGLREKC   74 (128)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCHH---HHHHHHHH----cCCC-EEEE-eccccCCH-----HHH-------HHHHHHH
Confidence            6788899999999999999865443   33333333    2232 2222 21111111     111       1333444


Q ss_pred             HhhcCceE-eEeccc-cCCHHHHHHHHHHHHcCCCCCCCCCCC
Q 021654          107 RSINNCNV-LAVSGM-STSKESAVEILDTWLKTPFKAPCPASG  147 (309)
Q Consensus       107 r~hN~aNv-l~lg~~-~~~~~~a~~i~~~~l~~~f~~~~p~~~  147 (309)
                      |+.+=..+ +.+|+. .++++...+..+.+.+--|..-||.+.
T Consensus        75 ~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt  117 (128)
T cd02072          75 DEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGT  117 (128)
T ss_pred             HHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEECcCC
Confidence            55432134 333443 478888888888899999988888766

Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=87.24  E-value=0.49  Score=46.18  Aligned_cols=63  Identities=21%  Similarity=0.167  Sum_probs=45.2

Q ss_pred             EcCCCcCCCeecCCceEEEEEecEEEEEEeeC--------------------CeEEEecCCcEEEECCCCeEEEEEcCCc
Q 021654          220 FKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK--------------------GERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       220 l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~--------------------~~~~~L~pGD~v~IP~g~~H~~~n~gd~  279 (309)
                      ..+|+...+|+-+.+-+++-..|+-+..+...                    ...+++.|||.+||||+.+|.-....++
T Consensus       126 a~~GGgvg~H~D~YDVfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae~dc  205 (383)
T COG2850         126 AAPGGGVGPHFDQYDVFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAEDDC  205 (383)
T ss_pred             ecCCCccCccccchheeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCcccccc
Confidence            35688899998777766666666666654211                    1236789999999999999998877655


Q ss_pred             eEE
Q 021654          280 EFF  282 (309)
Q Consensus       280 ~~~  282 (309)
                      ..+
T Consensus       206 ~ty  208 (383)
T COG2850         206 MTY  208 (383)
T ss_pred             cce
Confidence            543

>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes

Probab=86.77  E-value=0.31  Score=37.17  Aligned_cols=20  Identities=40%  Similarity=0.846  Sum_probs=17.0

Q ss_pred             eEEEEecCchhhhhhh-cCCC
Q 021654           71 RGLVACGTGVGVAIFA-NKNP   90 (309)
Q Consensus        71 ~gi~~CgtG~G~~iaa-NK~~   90 (309)
                      +.+++||+|+|.|+.+ +|++
T Consensus         1 kIlvvC~~Gi~TS~~~~~~i~   21 (90)
T PF02302_consen    1 KILVVCGSGIGTSLMVANKIK   21 (90)
T ss_dssp             EEEEEESSSSHHHHHHHHHHH
T ss_pred             CEEEECCChHHHHHHHHHHHH
Confidence            4689999999999998 7663

The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=86.54  E-value=2.8  Score=41.53  Aligned_cols=48  Identities=15%  Similarity=0.266  Sum_probs=36.2

Q ss_pred             CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          232 TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       232 ~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      .....++|++|++++.  .+++++.|++|+++|+|++...... .++..++
T Consensus       338 ~~~~Illv~~G~~~i~--~~~~~~~l~~G~~~fipa~~~~~~~-~g~~~~~  385 (389)
T PRK15131        338 QSAAILFCVEGEAVLW--KGEQQLTLKPGESAFIAANESPVTV-SGHGRLA  385 (389)
T ss_pred             CCcEEEEEEcceEEEE--eCCeEEEECCCCEEEEeCCCccEEE-ecccEEE
Confidence            3456689999999994  4678899999999999998765443 2444443

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=86.42  E-value=7.4  Score=37.46  Aligned_cols=38  Identities=29%  Similarity=0.445  Sum_probs=33.0

Q ss_pred             cCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCe
Q 021654          231 HTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDV  270 (309)
Q Consensus       231 H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~  270 (309)
                      +.....++|++|.+++.  .+++++.|++|+++++|+...
T Consensus       258 ~~~~~il~v~eG~~~l~--~~~~~~~l~~G~s~~ipa~~~  295 (312)
T COG1482         258 QESFSILLVLEGEGTLI--GGGQTLKLKKGESFFIPANDG  295 (312)
T ss_pred             CCCcEEEEEEcCeEEEe--cCCEEEEEcCCcEEEEEcCCC
Confidence            44778899999999995  468999999999999999844

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=86.06  E-value=2.7  Score=42.12  Aligned_cols=53  Identities=19%  Similarity=0.176  Sum_probs=41.3

Q ss_pred             ecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC-CceEEEE
Q 021654          230 HHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIK  284 (309)
Q Consensus       230 ~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~i~  284 (309)
                      -+..++.+++-+|.+.+.  ++=....+.|||+++||.|+.+++.-.+ ....+|+
T Consensus       151 NaDGD~Livpq~G~l~i~--TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~  204 (438)
T PRK05341        151 NADGELLIVPQQGRLRLA--TELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVC  204 (438)
T ss_pred             cCCCCEEEEEEeCCEEEE--EeccceEecCCCEEEEcCccEEEEecCCCCeeEEEE
Confidence            355666699999999994  4456789999999999999999998533 4555444

>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)

Probab=84.77  E-value=0.31  Score=38.44  Aligned_cols=19  Identities=26%  Similarity=0.543  Sum_probs=17.2

Q ss_pred             EEEEecCchhhhhhhcCCC
Q 021654           72 GLVACGTGVGVAIFANKNP   90 (309)
Q Consensus        72 gi~~CgtG~G~~iaaNK~~   90 (309)
                      -+++||+|++.|++++|++
T Consensus         2 Il~~Cg~G~sTS~~~~ki~   20 (96)
T cd05564           2 ILLVCSAGMSTSILVKKMK   20 (96)
T ss_pred             EEEEcCCCchHHHHHHHHH
Confidence            4789999999999999984

In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d

>PLN02288 mannose-6-phosphate isomerase

Probab=84.58  E-value=2.4  Score=42.06  Aligned_cols=52  Identities=17%  Similarity=0.187  Sum_probs=35.8

Q ss_pred             EEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeE--EEecCCcEEEECCCCe
Q 021654          217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER--FDLTVGDYLFTPAGDV  270 (309)
Q Consensus       217 ~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~--~~L~pGD~v~IP~g~~  270 (309)
                      .+++.++.......+.....++|++|++++..  +++.  ..|++|+++|+|++..
T Consensus       338 ~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~--~~~~~~~~l~~G~~~fv~a~~~  391 (394)
T PLN02288        338 HCDVPPGASVVFPAVPGPSVFLVIEGEGVLST--GSSEDGTAAKRGDVFFVPAGTE  391 (394)
T ss_pred             EEEeCCCCeEeecCCCCCEEEEEEcCEEEEec--CCccceEEEeceeEEEEeCCCc
Confidence            34555554322222556678999999999953  3444  6799999999998754

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=84.20  E-value=9.7  Score=31.83  Aligned_cols=121  Identities=13%  Similarity=0.085  Sum_probs=63.3

Q ss_pred             cEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654           13 LKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN   89 (309)
Q Consensus        13 mki~i~~---D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~   89 (309)
                      .||++|.   |-= --=|+.+...|+..||||+|.|.+.-++   .+++++.+    . .-..|.+|++=-...-.   +
T Consensus         3 ~~v~~a~~g~D~H-d~g~~iv~~~l~~~GfeVi~lg~~~s~e---~~v~aa~e----~-~adii~iSsl~~~~~~~---~   70 (132)
T TIGR00640         3 PRILVAKMGQDGH-DRGAKVIATAYADLGFDVDVGPLFQTPE---EIARQAVE----A-DVHVVGVSSLAGGHLTL---V   70 (132)
T ss_pred             CEEEEEeeCCCcc-HHHHHHHHHHHHhCCcEEEECCCCCCHH---HHHHHHHH----c-CCCEEEEcCchhhhHHH---H
Confidence            4666653   321 1257888999999999999999864443   33333333    2 23578888754211111   1


Q ss_pred             CceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhc
Q 021654           90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKS  162 (309)
Q Consensus        90 ~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~s  162 (309)
                                +.....-++.+..++..+-+.....+..    +.|....+.+-++....   +.+|-+++.+.
T Consensus        71 ----------~~~~~~L~~~g~~~i~vivGG~~~~~~~----~~l~~~Gvd~~~~~gt~---~~~i~~~l~~~  126 (132)
T TIGR00640        71 ----------PALRKELDKLGRPDILVVVGGVIPPQDF----DELKEMGVAEIFGPGTP---IPESAIFLLKK  126 (132)
T ss_pred             ----------HHHHHHHHhcCCCCCEEEEeCCCChHhH----HHHHHCCCCEEECCCCC---HHHHHHHHHHH
Confidence                      2333333443332554444443344332    34666666655555442   24455555543

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>PLN02658 homogentisate 1,2-dioxygenase

Probab=84.12  E-value=3.7  Score=41.10  Aligned_cols=53  Identities=15%  Similarity=0.177  Sum_probs=41.1

Q ss_pred             ecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC-CceEEEE
Q 021654          230 HHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIK  284 (309)
Q Consensus       230 ~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~i~  284 (309)
                      -++.++++++-+|.+.+.  ++=....+.|||+++||.|+.+++.-.+ ....+|+
T Consensus       144 NaDGD~Livpq~G~l~i~--TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~  197 (435)
T PLN02658        144 NADGDFLIVPQQGRLWIK--TELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVL  197 (435)
T ss_pred             cCCCCEEEEEEeCCEEEE--EeccceEecCCCEEEecCccEEEEecCCCCeeEEEE
Confidence            355666699999999994  3456789999999999999999998643 4555443

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=83.71  E-value=0.44  Score=37.63  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             ceEEEEecCchhhhhhhcCCCc
Q 021654           70 TRGLVACGTGVGVAIFANKNPG   91 (309)
Q Consensus        70 ~~gi~~CgtG~G~~iaaNK~~g   91 (309)
                      -+-+++||+|++.|+.+||++-
T Consensus         4 ~~ILl~C~~G~sSS~l~~k~~~   25 (95)
T TIGR00853         4 TNILLLCAAGMSTSLLVNKMNK   25 (95)
T ss_pred             cEEEEECCCchhHHHHHHHHHH
Confidence            3678999999999999999853

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed

Probab=82.87  E-value=0.59  Score=37.68  Aligned_cols=20  Identities=25%  Similarity=0.699  Sum_probs=17.9

Q ss_pred             eEEEEecCchhhhhhhcCCC
Q 021654           71 RGLVACGTGVGVAIFANKNP   90 (309)
Q Consensus        71 ~gi~~CgtG~G~~iaaNK~~   90 (309)
                      +-+++||+|++.||++||.+
T Consensus         3 kILlvCg~G~STSlla~k~k   22 (104)
T PRK09590          3 KALIICAAGMSSSMMAKKTT   22 (104)
T ss_pred             EEEEECCCchHHHHHHHHHH
Confidence            46899999999999999874

>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins

Probab=82.81  E-value=1  Score=34.67  Aligned_cols=20  Identities=25%  Similarity=0.318  Sum_probs=17.3

Q ss_pred             HHHHHHHHhCCCcEEEecCC
Q 021654           28 DALVSHLRSLNIDVEDLGTS   47 (309)
Q Consensus        28 ~~l~~~l~~~g~ev~d~G~~   47 (309)
                      ..|+++|+++||+|+|++..
T Consensus        11 s~v~~~L~~~GyeVv~l~~~   30 (80)
T PF03698_consen   11 SNVKEALREKGYEVVDLENE   30 (80)
T ss_pred             hHHHHHHHHCCCEEEecCCc
Confidence            36889999999999999964

>COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]

Probab=82.09  E-value=1.5  Score=39.27  Aligned_cols=81  Identities=23%  Similarity=0.278  Sum_probs=57.4

Q ss_pred             CcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----------CCcchhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654           12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGV   80 (309)
Q Consensus        12 ~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~   80 (309)
                      +|||++++-+.| .+ .+++..|...|++|..+...           ++.+.|..-++.++.     ....-++..-||+
T Consensus         1 ~~ki~~AT~N~~-K~-~E~~~il~~~~~ei~~~~~~~~~~e~eEtg~tf~enA~~Ka~~~a~-----~~g~pviaDDSGL   73 (194)
T COG0127           1 MMKIVLATGNKG-KL-RELKSILAPGGIEIESLKELGVEIEVEETGLTFEENALLKARAAAK-----ATGLPVIADDSGL   73 (194)
T ss_pred             CcEEEEEcCChH-HH-HHHHHHhcccCceEEEccccCCCCCccchhhHHHHHHHHHHHHHHh-----hcCCcEEEecCce
Confidence            479999999887 44 56788888877999876542           134455555555554     2456788888887


Q ss_pred             hhhhhhcCCCceEEEEeCCH
Q 021654           81 GVAIFANKNPGVFATTCLTP  100 (309)
Q Consensus        81 G~~iaaNK~~giraa~~~~~  100 (309)
                      -+. +.|-+|||+.|.....
T Consensus        74 ~v~-aL~G~PGvYSar~~~~   92 (194)
T COG0127          74 CVD-ALNGFPGVYSARFAGE   92 (194)
T ss_pred             EEe-ccCCCCcceeehhccc
Confidence            765 7899999988776643

>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial

Probab=82.00  E-value=2.1  Score=37.03  Aligned_cols=107  Identities=20%  Similarity=0.245  Sum_probs=62.7

Q ss_pred             HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhh---------hhhcCCCce----E
Q 021654           29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVA---------IFANKNPGV----F   93 (309)
Q Consensus        29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~---------iaaNK~~gi----r   93 (309)
                      .|...|++.|+++.+++.  ++...+...+.+.+..    ..+|.-|+-.|||.|-.         +.-=.+||+    +
T Consensus        26 ~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~----~~~DlVIttGGtg~g~~D~t~eal~~l~~~~l~G~~~~~~  101 (163)
T TIGR02667        26 YLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIAD----PDVQVILITGGTGFTGRDVTPEALEPLFDKTVEGFGELFR  101 (163)
T ss_pred             HHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhc----CCCCEEEECCCcCCCCCCCcHHHHHHHHCCcCCcHHHHHH
Confidence            677778899999999985  5677777777776644    46788888888887631         111122332    0


Q ss_pred             EEEeCC-HHHHHH----hHhhcCceEeEeccccCCHHHHH-HHHHHHHcCCC
Q 021654           94 ATTCLT-PADALN----TRSINNCNVLAVSGMSTSKESAV-EILDTWLKTPF  139 (309)
Q Consensus        94 aa~~~~-~~~A~~----~r~hN~aNvl~lg~~~~~~~~a~-~i~~~~l~~~f  139 (309)
                      ..-... ...+.+    +...++.=|++|++--.+...+. .++.-+|..-|
T Consensus       102 ~i~~~p~G~~~~lsr~~~g~~~~~~v~~LPG~P~aa~~~~~~~v~P~l~~~~  153 (163)
T TIGR02667       102 QLSYEEIGTSTIQSRALAGLANGTFVFCLPGSTGACRTAWDKIIAAQLDARH  153 (163)
T ss_pred             HHhhcccCHHHHHhhhhheeeCCeEEEECCCCHHHHHHHHHHHHHHHHHHHh
Confidence            000111 112221    23346777899998766654444 35665655544

This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.

>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization

Probab=81.35  E-value=0.63  Score=34.87  Aligned_cols=20  Identities=30%  Similarity=0.740  Sum_probs=16.9

Q ss_pred             eEEEEecCchhhh-hhhcCCC
Q 021654           71 RGLVACGTGVGVA-IFANKNP   90 (309)
Q Consensus        71 ~gi~~CgtG~G~~-iaaNK~~   90 (309)
                      +.+++|++|.|.+ |.+||+.
T Consensus         2 kilivC~~G~~~s~~l~~~l~   22 (85)
T cd05568           2 KALVVCPSGIGTSRLLKSKLK   22 (85)
T ss_pred             eEEEECCCCHHHHHHHHHHHH
Confidence            5789999999999 8887754

The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial

>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []

Probab=81.21  E-value=5.2  Score=33.18  Aligned_cols=95  Identities=21%  Similarity=0.304  Sum_probs=55.6

Q ss_pred             CcEEEEEeC--cccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654           12 PLKIIAGAD--SFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN   89 (309)
Q Consensus        12 ~mki~i~~D--~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~   89 (309)
                      .-+|+||.|  ..+-.+++.+.+-|...|.+|.|+|.-.-|.+...+...        .++-||.|=.|         ..
T Consensus        40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~tP~~~~~~~~~--------~~~ggi~iTaS---------hn  102 (137)
T PF02878_consen   40 GSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPTPALSFAIRQL--------NADGGIMITAS---------HN  102 (137)
T ss_dssp             SSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-HHHHHHHHHHH--------TESEEEEE--T---------TS
T ss_pred             CCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCcHHhhhhcccc--------ccceeeEEEec---------CC
Confidence            458999999  677779999999999999999999954444444443331        23445544322         22


Q ss_pred             CceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCC
Q 021654           90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPF  139 (309)
Q Consensus        90 ~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f  139 (309)
                      |+-                +|.--+..=.+..+.++.-++|.+.+.+.+|
T Consensus       103 p~~----------------~ngik~~~~~G~~~~~~~~~~I~~~~~~~~~  136 (137)
T PF02878_consen  103 PPG----------------YNGIKFFDANGGPISPEEERKIEQIIEREEF  136 (137)
T ss_dssp             -TT----------------EEEEEEEETTSSB--HHHHHHHHHHHHHT-E
T ss_pred             CCC----------------cceEEEEeCCCCcCCHHHHHHHHHHHHhhhc
Confidence            221                2222222223447778888888887766554

PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....

>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)

Probab=81.16  E-value=0.6  Score=35.72  Aligned_cols=20  Identities=50%  Similarity=0.785  Sum_probs=16.7

Q ss_pred             eEEEEecCchhhh-hhhcCCC
Q 021654           71 RGLVACGTGVGVA-IFANKNP   90 (309)
Q Consensus        71 ~gi~~CgtG~G~~-iaaNK~~   90 (309)
                      +.+++|++|+|.| |.+.|++
T Consensus         2 ~ilivC~~G~~tS~~l~~~i~   22 (89)
T cd05566           2 KILVACGTGVATSTVVASKVK   22 (89)
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            5789999999999 7777664

In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and

>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional

Probab=81.02  E-value=0.99  Score=35.50  Aligned_cols=48  Identities=13%  Similarity=0.231  Sum_probs=28.8

Q ss_pred             eEEEEecCchhhhhh-hcCCCc------eEEEEeC-CHHHHHHhHhhcCceEeEeccc
Q 021654           71 RGLVACGTGVGVAIF-ANKNPG------VFATTCL-TPADALNTRSINNCNVLAVSGM  120 (309)
Q Consensus        71 ~gi~~CgtG~G~~ia-aNK~~g------iraa~~~-~~~~A~~~r~hN~aNvl~lg~~  120 (309)
                      +-+++||+|+|-|.. ++|++-      |-+-..+ +..+  +....+|..++..+..
T Consensus         4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e--~~~~~~~~D~iv~t~~   59 (94)
T PRK10310          4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNE--IETYMDGVHLICTTAR   59 (94)
T ss_pred             eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHH--HhhhcCCCCEEEECCc
Confidence            478999999999988 677654      3333333 2222  2223356667766554

>PRK03094 hypothetical protein; Provisional

Probab=80.63  E-value=1.2  Score=34.27  Aligned_cols=18  Identities=17%  Similarity=0.252  Sum_probs=15.8

Q ss_pred             HHHHHHHhCCCcEEEecC
Q 021654           29 ALVSHLRSLNIDVEDLGT   46 (309)
Q Consensus        29 ~l~~~l~~~g~ev~d~G~   46 (309)
                      .|+++|+++||+|+|+-.
T Consensus        12 ~i~~~L~~~GYeVv~l~~   29 (80)
T PRK03094         12 DVQQALKQKGYEVVQLRS   29 (80)
T ss_pred             HHHHHHHHCCCEEEecCc
Confidence            488999999999999964

>cd00886 MogA_MoaB MogA_MoaB family

Probab=80.18  E-value=2.6  Score=35.78  Aligned_cols=49  Identities=24%  Similarity=0.207  Sum_probs=36.1

Q ss_pred             HHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654           29 ALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG   81 (309)
Q Consensus        29 ~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G   81 (309)
                      .|.++|+++|+++...+.  +|..++...+.+...+    ..+|.-|+..|+|.|
T Consensus        24 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~----~~~DlVittGG~s~g   74 (152)
T cd00886          24 ALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADE----DGVDLILTTGGTGLA   74 (152)
T ss_pred             HHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhc----CCCCEEEECCCcCCC
Confidence            577789999999999985  4566677777666553    357777777777766

Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	309
3he8_A	149	Structural Study Of Clostridium Thermocellum Ribose		1e-14
3ph4_A	169	Clostridium Thermocellum Ribose-5-Phosphate Isomera		1e-14
1nn4_A	162	Structural Genomics, RpibALSB Length = 162		5e-12
2vvr_A	149	Crystal Structure Of The H99n Mutant Of Ribose-5-Ph		9e-12
3s5p_A	166	Crystal Structure Of Ribose-5-Phosphate Isomerase B		1e-10
1o1x_A	155	Crystal Structure Of A Ribose 5-phosphate Isomerase		2e-09
3k7o_A	179	Structure Of Type B Ribose 5-phosphate Isomerase Fr		5e-09
3k7p_A	179	Structure Of Mutant Of Ribose 5-phosphate Isomerase		5e-08
3m1p_A	153	Structure Of Ribose 5-Phosphate Isomerase Type B Fr		6e-08
4em8_A	148	The Structure Of Ribose 5-Phosphate Isomerase B Fro		7e-08
1usl_A	170	Structure Of Mycobacterium Tuberculosis Ribose-5-ph		8e-06
2vvo_A	162	Crystal Structure Of Mycobacterium Tuberculosis Rib		8e-06
2bes_A	172	Structure Of Mycobacterium Tuberculosis Ribose-5-Ph		9e-06
3sdw_A	184	Crystal Structure Of A Ribose-5-Phosphate Isomerase		2e-05
3qd5_A	167	Crystal Structure Of A Putative Ribose-5-Phosphate		4e-04

>pdb|3HE8|A Chain A, Structural Study Of Clostridium Thermocellum Ribose-5-Phosphate Isomerase B Length = 149

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVXXXXXXXXXXR 71
           +KI  G+D  G  LK  +   L+    +V D GT    S+   + G +V          R
Sbjct: 1   MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR 60
Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G+V CGTG+G++I ANK PG+ A  C     A  +R  N+ N+LA+       + A++I+
Sbjct: 61  GIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIV 120
Query: 132 DTWLKTPFKAPCPAS 146
           DTWLK  F+    A+
Sbjct: 121 DTWLKAEFQGGRHAT 135

>pdb|3PH4|A Chain A, Clostridium Thermocellum Ribose-5-Phosphate Isomerase B With D-Allose Length = 169

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 1/135 (0%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVXXXXXXXXXXR 71
           +KI  G+D  G  LK  +   L+    +V D GT    S+   + G +V          R
Sbjct: 21  MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR 80
Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G+V CGTG+G++I ANK PG+ A  C     A  +R  N+ N+LA+       + A++I+
Sbjct: 81  GIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIV 140
Query: 132 DTWLKTPFKAPCPAS 146
           DTWLK  F+    A+
Sbjct: 141 DTWLKAEFQGGRHAT 155

>pdb|1NN4|A Chain A, Structural Genomics, RpibALSB Length = 162

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVXXXXXXXX 68
           KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V        
Sbjct: 16  KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG- 74
Query: 69  XXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct: 75  ---GILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAK 131
Query: 129 EILDTWLKTPFKA 141
            I+D WL   ++ 
Sbjct: 132 MIVDAWLGAQYEG 144

>pdb|2VVR|A Chain A, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate Isomerase B From E. Coli Soaked With Ribose 5-Phosphate Length = 149

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 9/132 (6%)
Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVXXXXXXXX 68
           KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V        
Sbjct: 3   KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVDG- 61
Query: 69  XXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct: 62  ---GILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAK 118
Query: 129 EILDTWLKTPFK 140
            I+D WL   ++
Sbjct: 119 MIVDAWLGAQYE 130

>pdb|3S5P|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase B Rpib From Giardia Lamblia Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 62/139 (44%), Gaps = 15/139 (10%)
Query: 10  PHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS--------DYYSIGAEVGRRVX 61
           P  +K+   +D  G +L+  L     +   +V DLGT         D+  IG E      
Sbjct: 19  PGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEA----- 73
Query: 62  XXXXXXXXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMS 121
                      ++ CGTG+G++I ANK  G+    C T  DA   R  NN N LA+ G +
Sbjct: 74  --VTSGRADCCILVCGTGIGISIAANKMKGIRCALCSTEYDAEMARKHNNANALALGGRT 131
Query: 122 TSKESAVEILDTWLKTPFK 140
           T  E A  IL  +L T F+
Sbjct: 132 TGPEVAASILSRFLSTNFE 150

>pdb|1O1X|A Chain A, Crystal Structure Of A Ribose 5-phosphate Isomerase Rpib (tm1080) From Thermotoga Maritima At 1.90 A Resolution Length = 155

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVXXXXXXXXXXR 71
           +KI   +D    ELK+ + ++L    I+VED GT    S+   +  ++V           
Sbjct: 13  VKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADF 72
Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G++  GTG+G +I AN+  G+ A  CL P  A   RS NN N+L + G     E A  I+
Sbjct: 73  GILLXGTGLGXSIAANRYRGIRAALCLFPDXARLARSHNNANILVLPGRLIGAELAFWIV 132
Query: 132 DTWLKTPF 139
           DT+L TPF
Sbjct: 133 DTFLSTPF 140

>pdb|3K7O|A Chain A, Structure Of Type B Ribose 5-phosphate Isomerase From Trypanosoma Cruzi Length = 179

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 43/68 (63%)
Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G++ACG+G+G++I ANK PGV A  C     A  +R  N+ N++ V   +T  E   EI+
Sbjct: 85  GVLACGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREII 144
Query: 132 DTWLKTPF 139
            T+L+TPF
Sbjct: 145 ITFLQTPF 152

>pdb|3K7P|A Chain A, Structure Of Mutant Of Ribose 5-phosphate Isomerase Type B From Trypanosoma Cruzi. Length = 179

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G++A G+G+G++I ANK PGV A  C     A  +R  N+ N++ V   +T  E   EI+
Sbjct: 85  GVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREII 144
Query: 132 DTWLKTPF 139
            T+L+TPF
Sbjct: 145 ITFLQTPF 152

>pdb|3M1P|A Chain A, Structure Of Ribose 5-Phosphate Isomerase Type B From Trypanosoma Cruzi, Soaked With Allose-6-Phosphate Length = 153

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 42/68 (61%)
Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G++A G+G+G++I ANK PGV A  C     A  +R  N+ N++ V   +T  E   EI+
Sbjct: 65  GVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREII 124
Query: 132 DTWLKTPF 139
            T+L+TPF
Sbjct: 125 ITFLQTPF 132

>pdb|4EM8|A Chain A, The Structure Of Ribose 5-Phosphate Isomerase B From Anaplasma Phagocytophilum Length = 148

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLG------TSDYYSIGAEVGRRVXXXXXXX 67
           ++   +D  G EL+  L ++LR L  +V D G      + DY     +V R V       
Sbjct: 9   RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDTSF-- 66
Query: 68  XXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G++ CGTG+G++I AN++  + A  C +   A  +R  N+ NVL         ++A
Sbjct: 67  ----GVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTA 122
Query: 128 VEILDTWLKTPF 139
             +L T++ T F
Sbjct: 123 QSVLYTFMTTAF 134

>pdb|1USL|A Chain A, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate Isomerase, Rpib, Rv2465c, Complexed With Phosphate. Length = 170

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 10/133 (7%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT------SDYYSIGAEVGRRVXXXXXX 66
           +++  GAD  G ELK  ++ HL+    +  D G        DY +       R       
Sbjct: 12  MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGS 71
Query: 67  XXXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
                G+V  G+G G  I ANK PG       +   A   R  NN  ++ + G   +   
Sbjct: 72  L----GIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAE 127
Query: 127 AVEILDTWLKTPF 139
           A+ I+D ++ TP+
Sbjct: 128 ALAIVDAFVTTPW 140

>pdb|2VVO|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5- Phosphate Isomerase B In Complex With Alpha D-Allose 6- Phosphate Length = 162

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 10/133 (7%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT------SDYYSIGAEVGRRVXXXXXX 66
           +++  GAD  G ELK  ++ HL+    +  D G        DY +       R       
Sbjct: 4   MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGS 63
Query: 67  XXXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
                G+V  G+G G  I ANK PG       +   A   R  NN  ++ + G   +   
Sbjct: 64  L----GIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAE 119
Query: 127 AVEILDTWLKTPF 139
           A+ I+D ++ TP+
Sbjct: 120 ALAIVDAFVTTPW 132

>pdb|2BES|A Chain A, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D- Erythronohydroxamic Acid. Length = 172

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 10/133 (7%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT------SDYYSIGAEVGRRVXXXXXX 66
           +++  GAD  G ELK  ++ HL+    +  D G        DY +       R       
Sbjct: 14  MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGS 73
Query: 67  XXXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
                G+V  G+G G  I ANK PG       +   A   R  NN  ++ + G   +   
Sbjct: 74  L----GIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAE 129
Query: 127 AVEILDTWLKTPF 139
           A+ I+D ++ TP+
Sbjct: 130 ALAIVDAFVTTPW 142

>pdb|3SDW|A Chain A, Crystal Structure Of A Ribose-5-Phosphate Isomerase B Rpib From Coccidioides Immitis Bound To Phosphate Length = 184

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 12  PLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTSDYYSIGA--EVGRRVXXXXXXX 67
           PL++    D  G   K+AL +HL    L   + D+G +      A   V  +        
Sbjct: 29  PLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDG 88
Query: 68  XXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
              R L+ CGTG+GVAI ANK PG+ A T             N+  VL         E A
Sbjct: 89  KVDRALMICGTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIGIELA 148
Query: 128 VEILDTWLKTPF 139
             +   WL   F
Sbjct: 149 KRLAGEWLTYRF 160

>pdb|3QD5|A Chain A, Crystal Structure Of A Putative Ribose-5-Phosphate Isomerase From Coccidioides Immitis Solved By Combined Iodide Ion Sad And Mr Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Query: 12  PLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTSDYYSIGA--EVGRRVXXXXXXX 67
           PL++    D  G   K+AL +HL    L   + D+G +      A   V  +        
Sbjct: 12  PLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDG 71
Query: 68  XXXRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
              R L+  GTG+GVAI ANK PG+ A T             N+  VL         E A
Sbjct: 72  KVDRALMIXGTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIGIELA 131
Query: 128 VEILDTWLKTPF 139
             +   WL   F
Sbjct: 132 KRLAGEWLTYRF 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
1o1x_A	155	Ribose-5-phosphate isomerase RPIB; structural geno	4e-34
3s5p_A	166	Ribose 5-phosphate isomerase; structural genomics,	6e-34
2vvr_A	149	Ribose-5-phosphate isomerase B; RPIB, carbohydrate	1e-33
3he8_A	149	Ribose-5-phosphate isomerase; CTRPI B, isomerizati	1e-33
3ph3_A	169	Ribose-5-phosphate isomerase; alpha-beta-alpha san	1e-33
4em8_A	148	Ribose 5-phosphate isomerase B; ssgcid, seattle st	2e-32
3sgw_A	184	Ribose 5-phosphate isomerase; structural genomics,	2e-32
2vvp_A	162	Ribose-5-phosphate isomerase B; RPIB, RV2465C, RAR	3e-32
3k7p_A	179	Ribose 5-phosphate isomerase; pentose phosphate pa	1e-30
3c5y_A	231	Ribose/galactose isomerase; structural genomics, j	2e-29
3ono_A	214	Ribose/galactose isomerase; structural genomics, P	8e-29
2ppw_A	216	Conserved domain protein; the putative RPIB, PSI-2	1e-27
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	8e-20
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	3e-19
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	2e-17
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	3e-10
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	2e-08
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	2e-08
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	2e-08
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	3e-08
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	2e-07
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	2e-07
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	2e-07
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	3e-06
1v70_A	105	Probable antibiotics synthesis protein; structural	1e-06
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	1e-06
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	1e-06
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	1e-06
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	2e-06
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	3e-06
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	4e-06
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	6e-04
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	6e-06
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	6e-06
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	2e-04
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	9e-06
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	1e-05
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	1e-05
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	2e-05
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	2e-05
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	2e-05
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	1e-04
3h8u_A	125	Uncharacterized conserved protein with double-STR	2e-05
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	3e-05
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	4e-05
1sef_A	274	Conserved hypothetical protein; structural genomic	7e-05
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	1e-04
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	2e-04
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	6e-04
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	6e-04

>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1 Length = 155

 Score =  121 bits (305), Expect = 4e-34
 Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 9/144 (6%)

Query: 1   MAENAAAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAE 55
           M  +      H +KI   +D    ELK+ + ++L    I+VED GT      DY     +
Sbjct: 1   MGSDKIHHHHHHVKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKK 60

Query: 56  VGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVL 115
           V + + S+++      G++ CGTG+G++I AN+  G+ A  CL P  A   RS NN N+L
Sbjct: 61  VVQSILSNEAD----FGILLCGTGLGMSIAANRYRGIRAALCLFPDMARLARSHNNANIL 116

Query: 116 AVSGMSTSKESAVEILDTWLKTPF 139
            + G     E A  I+DT+L TPF
Sbjct: 117 VLPGRLIGAELAFWIVDTFLSTPF 140

>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia} Length = 166

 Score =  121 bits (305), Expect = 6e-34
 Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 4   NAAAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGR 58
            A    P  +K+   +D  G +L+  L     +   +V DLGT      DY         
Sbjct: 13  EAQTQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCE 72

Query: 59  RVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
            V+S  +       ++ CGTG+G++I ANK  G+    C T  DA   R  NN N LA+ 
Sbjct: 73  AVTSGRAD----CCILVCGTGIGISIAANKMKGIRCALCSTEYDAEMARKHNNANALALG 128

Query: 119 GMSTSKESAVEILDTWLKTPF 139
           G +T  E A  IL  +L T F
Sbjct: 129 GRTTGPEVAASILSRFLSTNF 149

>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A Length = 149

 Score =  119 bits (302), Expect = 1e-33
 Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDT 68
           KI  G D  G  LK  +V+HL    ++V D GT      DY    ++V   V+  +    
Sbjct: 3   KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVD-- 60

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct: 61  --GGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAK 118

Query: 129 EILDTWLKTPF 139
            I+D WL   +
Sbjct: 119 MIVDAWLGAQY 129

>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A* Length = 149

 Score =  119 bits (302), Expect = 1e-33
 Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 9/131 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDT 68
           KI  G+D  G  LK  +   L+    +V D GT      DY   G +V   V S +    
Sbjct: 2   KIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECD-- 59

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
             RG+V CGTG+G++I ANK PG+ A  C     A  +R  N+ N+LA+       + A+
Sbjct: 60  --RGIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLAL 117

Query: 129 EILDTWLKTPF 139
           +I+DTWLK  F
Sbjct: 118 DIVDTWLKAEF 128

>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} PDB: 3ph4_A* Length = 169

 Score =  120 bits (302), Expect = 1e-33
 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 9/133 (6%)

Query: 12  PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSS 66
            +KI  G+D  G  LK  +   L+    +V D GT      DY   G +V   V S +  
Sbjct: 20  HMKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECD 79

Query: 67  DTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
               RG+V CGTG+G++I ANK PG+ A  C     A  +R  N+ N+LA+       + 
Sbjct: 80  ----RGIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDL 135

Query: 127 AVEILDTWLKTPF 139
           A++I+DTWLK  F
Sbjct: 136 ALDIVDTWLKAEF 148

>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum} Length = 148

 Score =  116 bits (293), Expect = 2e-32
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 12/132 (9%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSD 67
           ++   +D  G EL+  L ++LR L  +V D G        DY     +V R VS +    
Sbjct: 9   RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDTS--- 65

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G++ CGTG+G++I AN++  + A  C +   A  +R  N+ NVL         ++A
Sbjct: 66  ---FGVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTA 122

Query: 128 VEILDTWLKTPF 139
             +L T++ T F
Sbjct: 123 QSVLYTFMTTAF 134

>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A* Length = 184

 Score =  117 bits (295), Expect = 2e-32
 Identities = 40/142 (28%), Positives = 56/142 (39%), Gaps = 12/142 (8%)

Query: 6   AAAAPHPLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTS------DYYSIGAEVG 57
           AA    PL++    D  G   K+AL +HL    L   + D+G +       Y  +  +  
Sbjct: 23  AATPLPPLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAA 82

Query: 58  RRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAV 117
           + +          R L+ CGTG+GVAI ANK PG+ A T             N+  VL  
Sbjct: 83  QLIKDGKVD----RALMICGTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCF 138

Query: 118 SGMSTSKESAVEILDTWLKTPF 139
                  E A  +   WL   F
Sbjct: 139 GQRVIGIELAKRLAGEWLTYRF 160

>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A Length = 162

 Score =  116 bits (293), Expect = 3e-32
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSD 67
           ++  GAD  G ELK  ++ HL+    +  D G        DY +       R  +   S 
Sbjct: 5   RVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGS- 63

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+V  G+G G  I ANK PG       +   A   R  NN  ++ + G   +   A
Sbjct: 64  ---LGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEA 120

Query: 128 VEILDTWLKTPF 139
           + I+D ++ TP+
Sbjct: 121 LAIVDAFVTTPW 132

>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A Length = 179

 Score =  112 bits (283), Expect = 1e-30
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 11/133 (8%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDL--GTS-----DYYSIGAEVGRRVSSSDSS 66
           ++  G D     + + L+ +++    +   +  G       DY    + V   V+  +  
Sbjct: 24  RVAIGTDHPAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVE 83

Query: 67  DTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
                G++A G+G+G++I ANK PGV A  C     A  +R  N+ N++ V   +T  E 
Sbjct: 84  ----FGVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEV 139

Query: 127 AVEILDTWLKTPF 139
             EI+ T+L+TPF
Sbjct: 140 IREIIITFLQTPF 152

>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans} Length = 231

 Score =  111 bits (278), Expect = 2e-29
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 16/144 (11%)

Query: 11  HPLKIIAGADSFGAE----LKDALVSHLRSLNIDVEDLGTS--------DYYSIGAEVGR 58
             +KI    ++  A     + +AL +    L   V + G           Y   G   G 
Sbjct: 18  QGMKIALIIENSQAAKNAVVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGI 77

Query: 59  RVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
            ++S  +       +  CGTG+G  + AN  PGVF    + P DA     IN+ N +++ 
Sbjct: 78  LLNSGAAD----FVVTGCGTGMGSMLAANAMPGVFCGLVIDPTDAFLFGQINDGNAISMP 133

Query: 119 GMSTSKESAVEILDTWLKTPFKAP 142
                  +A   L    +  F   
Sbjct: 134 YSKGFGWAAELNLQDVYRKLFDGE 157

>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus} Length = 214

 Score =  109 bits (273), Expect = 8e-29
 Identities = 35/190 (18%), Positives = 65/190 (34%), Gaps = 20/190 (10%)

Query: 12  PLKIIAGADSFGAELKDALVSHLR----SLNIDVEDLGTS-------DYYSIGAEVGRRV 60
            +KI    ++  A     +   L      L  DV ++G +        Y  +G      +
Sbjct: 3   AMKIALMMENSQAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILL 62

Query: 61  SSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM 120
           +S          +  CGTG G  +  N +PGV    CL P+DA     INN N ++++  
Sbjct: 63  NSKAVD----FVVTGCGTGQGALMSCNLHPGVVCGYCLEPSDAFLFNQINNGNAISLAFA 118

Query: 121 STSKESAVEILDTWLKTPFKAP----CPASGFKPWEENISCFFD-KSMTEMPLIGKNDKL 175
                +    +    +  F        P     P + N +   + K+     ++     +
Sbjct: 119 KGFGWAGELNVRYIFEKAFTGKRGEGYPIERAAPQQANAAILNNVKAAVAKDVVEGLRAI 178

Query: 176 DSDSSSSTCS 185
           D +   +   
Sbjct: 179 DQELVKTAVG 188

>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae} Length = 216

 Score =  105 bits (264), Expect = 1e-27
 Identities = 36/192 (18%), Positives = 61/192 (31%), Gaps = 21/192 (10%)

Query: 11  HPLKIIAGADSFGAELKDALVSHLR----SLNIDVEDLGTS--------DYYSIGAEVGR 58
           + +KI    ++  A     +   L+         + + G           Y   G     
Sbjct: 2   NAMKIALINENSQASKNHIIYDSLKEATDKKGYQLFNYGMRGEEGESQLTYVQNGLMAAI 61

Query: 59  RVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAV- 117
            +++          +  CGTGVG  +  N  PGV     + P DA     IN  N L++ 
Sbjct: 62  LLNTKAVD----FVVTGCGTGVGAMLALNSFPGVVCGLAVDPTDAYLYSQINGGNALSIP 117

Query: 118 --SGMSTSKESAVE-ILDTWLKTPFKAPCPASGFKPWEENISCFFD-KSMTEMPLIGKND 173
              G     E  ++ + +           P     P + N     + K +T   L+    
Sbjct: 118 YAKGFGWGAELTLKLMFERLFAEEMGGGYPRERVIPEQRNARILNEVKQITHNDLMTILK 177

Query: 174 KLDSDSSSSTCS 185
            +D D    T S
Sbjct: 178 IIDQDFLKDTIS 189

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21 Length = 145

 Score = 83.2 bits (205), Expect = 8e-20
 Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 6/108 (5%)

Query: 194 ELNPVEMIPGGSMKIIRESPTS----AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNL 249
                    G   K++  SP      AI    AGS   AH H    +  + +GK  V   
Sbjct: 21  PFPAAFSTGGIRWKLLHVSPEMGSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRGG 80

Query: 250 TKGERFDLTVGDYLFTPAGDVHRVKYYEE-TEFFIKWDGRWDMFFDED 296
                       Y +  A   H    +   +EF++ + G    F   D
Sbjct: 81  KAAGGDTAIAPGYGYESANARHDKTEFPVASEFYMSFLGPL-TFVKPD 127

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii} Length = 153

 Score = 81.6 bits (201), Expect = 3e-19
 Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 197 PVEMIPGGSMKIIRESPT----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG 252
                 G + +++  SP     +AI    AGS   +H H    +  + +GK  V    + 
Sbjct: 26  EAFSDGGITWQLLHSSPETSSWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVRGGEQE 85

Query: 253 ERFDLTVGDYLFTPAGDVH-RVKYYEETEFFIKWDGRWDMFFDED 296
                    Y F  +G +H +  +  E++F++ + G    F D++
Sbjct: 86  GGSTAYAPSYGFESSGALHGKTFFPVESQFYMTFLGPL-NFIDDN 129

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha} Length = 165

 Score = 77.0 bits (189), Expect = 2e-17
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 12/105 (11%)

Query: 200 MIPGGSMKIIRESPTS----AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERF 255
              G  +  +   P +        F  G   P H HT    +  + G    W  T+    
Sbjct: 26  GHEGTDIFPLFMDPYNGLMVMRASFAPGLTLPLHFHTGTVHMYTISGC---WYYTEYPGQ 82

Query: 256 DLTVGDYLFTPAGDVHRVKYY----EETEFFIKWDGRWDMFFDED 296
             T G YL+ P G +H+         +TE      G  ++ F +D
Sbjct: 83  KQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSGC-NVNFTQD 126

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Length = 126

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 194 ELNPVEMIPGGSMKIIR-ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG 252
           E+     +PG +M+ I+ ++     VR +  +  PAH H      V+L+G   +      
Sbjct: 21  EVRSFSPLPGFAMQAIQGKNLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELT--IGE 78

Query: 253 ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI 283
           E   L  G     P G  HR + +E+    +
Sbjct: 79  ETRVLRPGMAYTIPGGVRHRARTFEDGCLVL 109

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Length = 167

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 10/103 (9%)

Query: 211 ESPTSAIVRF--KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAG 268
           E+P      F  + G       H   H ++V++G   V  +       LT  D ++    
Sbjct: 52  EAPAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEV--VLDDRVEPLTPLDCVYIAPH 109

Query: 269 DVHRVKYYEETE------FFIKWDGRWDMFFDEDLEAAKKAVE 305
             H++      E             R      +DL        
Sbjct: 110 AWHQIHATGANEPLGFLCIVDSDRDRPQRPDADDLARMCADPA 152

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Length = 116

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 189 LVKNRELNPVEMIPGGSMKIIRESP--TSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSV 246
                +    ++  G   +++  +    +  + F  G+    H H       V++G+  V
Sbjct: 8   FSFGEQTEIEDIGGGLKRQMLGFNHELMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHV 67

Query: 247 WNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282
                G    LT GD  F P    H           
Sbjct: 68  N--VDGVIKVLTAGDSFFVPPHVDHGAVCPTGGILI 101

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 13/59 (22%), Positives = 24/59 (40%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
                      P H H + H++ VL+G   +    +G   ++  G+ +F P G+ H   
Sbjct: 42  TEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGRTEEVGPGEAIFIPRGEPHGFV 100

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 50.6 bits (121), Expect = 3e-08
 Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 197 PVEMIPGGSMKII---RESPTSAIVRF--KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK 251
             + + G   +++   +++P   +  F  + G +   H H + H++ VL+GK +V    +
Sbjct: 27  STDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--E 84

Query: 252 GERFDLTVGDYLFTPAGDVHRVK 274
                +  G Y+F    ++H  +
Sbjct: 85  QGEETVEEGFYIFVEPNEIHGFR 107

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Length = 166

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 4/69 (5%)

Query: 208 IIRESPTSAIVRF--KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFT 265
                 T  +  F    G       H   H +++L+G+     +       +   D +  
Sbjct: 46  FSGNGLTGELRYFEVGPGGHSTLERHQHAHGVMILKGRGHA--MVGRAVSAVAPYDLVTI 103

Query: 266 PAGDVHRVK 274
           P    H+ +
Sbjct: 104 PGWSWHQFR 112

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Length = 156

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 4/69 (5%)

Query: 208 IIRESPTSAIVRF--KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFT 265
               +       F    G       H   H +++ +G             D+  GD +F 
Sbjct: 37  FADPNLACEWRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCL--VGETISDVAQGDLVFI 94

Query: 266 PAGDVHRVK 274
           P    H+ +
Sbjct: 95  PPMTWHQFR 103

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 218 VRFKAGSVEPAHHHTFGHDLV-VLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY 276
           +    G   P H H   H+ + VL GK  +     GER+ L  GDY   PAG  H  +  
Sbjct: 51  LSGGKGDAFPLHVHKDTHEGILVLDGKLELT--LDGERYLLISGDYANIPAGTPHSYRMQ 108

Query: 277 EETEFFIKW--DGRWDMFFDE 295
                 + +   G     +  
Sbjct: 109 SHRTRLVSYTMKGNVAHLYSV 129

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 24/176 (13%), Positives = 53/176 (30%), Gaps = 12/176 (6%)

Query: 129 EILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSSSSTCSICC 188
            I + +                     +        +      + KL   +     ++  
Sbjct: 129 VIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPY 188

Query: 189 LVKNRELNPVEMIPGGSMKIIRESPTS------AIVRFKAGSVEPAHHHTFGHDLV-VLQ 241
           ++++ E     +      +I+     +             G     H+H +  +    L+
Sbjct: 189 VLESGE-GDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLE 247

Query: 242 GKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW--DGRWDMFFDE 295
           G+ ++W  T G+   L  GD+L  PA  VH  +        +     G ++ FF  
Sbjct: 248 GQMTMW--TDGQEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPGLFEPFFRT 301

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLV-VLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
            +     G  +  H H     +   L+G+  V      E   L  G   F PAG  H V+
Sbjct: 31  DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVR--VGEEEALLAPGMAAFAPAGAPHGVR 88

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134} Length = 159

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 13/107 (12%)

Query: 198 VEMIPGGSMKIIRESP----TSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGE 253
                   +K  +  P    T  +++  AG   P HHHT    +  +QG    W   + +
Sbjct: 23  APYSNDVMVKYFKIDPVRGETITLLKAPAGMEMPRHHHTGTVIVYTVQGS---WRYKEHD 79

Query: 254 RFDLTVGDYLFTPAGDVHRVKYY----EETEFFIKWDGRWDMFFDED 296
                 G  ++  A   H  +       +   F    G   ++ D+ 
Sbjct: 80  WV-AHAGSVVYETASTRHTPQSAYAEGPDIITFNIVAGEL-LYLDDK 124

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Length = 110

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 193 RELNPVEMIP----GGSMKIIRESPTSAIVRF--KAGSVEPAHHHTFGHD--LVVLQGKK 244
           +  N +E +        M+++ ES    IV F  KAG   P H H    +  +VVL+G+ 
Sbjct: 7   KSHNLLEAVRFDDQRFVMELVHESENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEG 66

Query: 245 SVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI 283
                          G  L  P    H V+   + +  +
Sbjct: 67  EFV-GDGDAVIPAPRGAVLVAPISTPHGVRAVTDMKVLV 104

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Length = 115

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 5/80 (6%)

Query: 198 VEMIPGG--SMKIIRESPTSAI-VRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER 254
           V +      S  +++             G     H       + +L G   +      E 
Sbjct: 22  VMIEQDQMLSRTLVQRQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEIT--IDQET 79

Query: 255 FDLTVGDYLFTPAGDVHRVK 274
           + +  G  +  PAG  H + 
Sbjct: 80  YRVAEGQTIVMPAGIPHALY 99

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Length = 114

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 199 EMIPGGSMKIIRESPTSAIVR--FKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFD 256
           + +       + +     ++R    AG    +H       +  L+G+  +     G +  
Sbjct: 20  KQLTQTPSAALFKEHRLEVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIG--VDGAQRR 77

Query: 257 LTVGDYLFTPAGDVHRVKYYEETEF 281
           L  GD L+  AG  H V     T  
Sbjct: 78  LHQGDLLYLGAGAAHDVNAITNTSL 102

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A Length = 266

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY 276
           + + K  S            + V++G  ++ N        LTV  Y + P    H +   
Sbjct: 74  LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNT-SSSSKKLTVDSYAYLPPNFHHSLDCV 132

Query: 277 EETEF-FIKW 285
           E       + 
Sbjct: 133 ESATLVVFER 142

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 46.6 bits (110), Expect = 4e-06
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 191 KNRELNPVEMIPGGSMKIIRESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWN 248
           K      + +           + T  + +     G V P+H H       +++GK   + 
Sbjct: 76  KEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGK-GAFT 134

Query: 249 LTKGERFDLTVGDYLFTPAGDVHR 272
              GER  +  GD++ TP    H 
Sbjct: 135 AVDGERTPMNEGDFILTPQWRWHD 158

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 2/56 (3%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR 272
           +     G        T      V++G  S   +   E F  +  D    P      
Sbjct: 272 LQLLPKGFASRVARTTDSTIYHVVEG--SGQVIIGNETFSFSAKDIFVVPTWHGVS 325

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Length = 227

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 20/96 (20%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 189 LVKNRELNPVEMI---PGG--SMKIIR-ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQG 242
           L      N  E++    G   S  ++   +    I+ F  G     H       + VL G
Sbjct: 123 LESASAFNLAEVVEYQEGKIVSKNLVAKPNLVMTIMSFWKGESLDPHKAPGDALVTVLDG 182

Query: 243 KKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE 278
           +   +    G+ F +  G+    PA   H V+   E
Sbjct: 183 EGKYY--VDGKPFIVKKGESAVLPANIPHAVEAETE 216

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 46.3 bits (109), Expect = 6e-06
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 215 SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           +AI         P H H+      V++G+  VW +  G+   ++ GD L TP    H   
Sbjct: 105 AAIQYLGPRETAPEHRHSQNAFRFVVEGE-GVWTVVNGDPVRMSRGDLLLTPGWCFHGHM 163

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY 275
              R +AG+     +        V +G  +V     GE   L  GD    P+     ++ 
Sbjct: 282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVV--MNGETTKLEKGDMFVVPSWVPWSLQA 339

Query: 276 YEETEFF 282
             + + F
Sbjct: 340 ETQFDLF 346

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei} Length = 223

 Score = 45.3 bits (107), Expect = 7e-06
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 201 IPGGSMKIIR-----ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERF 255
           + G   +++       +  ++IVR+  GS   AH H  G + +VL G   V+    G   
Sbjct: 26  MKGVERRMLDRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFIVLDG---VFQDEHG--- 79

Query: 256 DLTVGDYLFTPAGDVHR 272
           D   G Y+  P    H 
Sbjct: 80  DYPAGTYVRNPPTTSHV 96

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 48/327 (14%), Positives = 94/327 (28%), Gaps = 96/327 (29%)

Query: 1   MAENAAAAAPHPLKIIAGADSFGAELKDALVS--HLRSLNI--DVEDLGTSDYYSIGAEV 56
           +  N  + + H   I     S  AEL+  L S  +   L +  +V++    + +++  ++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 57  GRRVSSSDSSDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTP-------ADALNT--- 106
              +++     T               I  + +         TP          L+    
Sbjct: 269 --LLTTRFKQVTD-----FLSAATTTHISLDHHSMTL-----TPDEVKSLLLKYLDCRPQ 316

Query: 107 ---RSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSM 163
              R +   N   +S ++ S     + L TW                W+           
Sbjct: 317 DLPREVLTTNPRRLSIIAESIR---DGLATW--------------DNWKHV--------- 350

Query: 164 TEMPLIGKNDKLDSDSSSSTCSICCLVKNRELNPVEMIPG-GSMKIIRES---PTSAIVR 219
                    DKL +   SS       +    L P E       + +   S   PT  +  
Sbjct: 351 -------NCDKLTTIIESS-------LNV--LEPAEYRKMFDRLSVFPPSAHIPTILLSL 394

Query: 220 FKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVG------DYLFTPAGD--VH 271
                ++     +    +V    K S   L + +  + T+       +       +  +H
Sbjct: 395 IWFDVIK-----SDVMVVVNKLHKYS---LVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 272 R--VKYYEETEFFIKWDG---RWDMFF 293
           R  V +Y   + F   D      D +F
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYF 473

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Length = 163

 Score = 44.4 bits (104), Expect = 9e-06
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 7/65 (10%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVW-------NLTKGERFDLTVGDYLFTPAGD 269
           +     G   P H H+      VL+GK ++           + +            P  D
Sbjct: 45  LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVND 104

Query: 270 VHRVK 274
            H+V 
Sbjct: 105 PHQVW 109

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Length = 114

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 198 VEMIPGG--SMKIIR-ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER 254
           +E       SM + + +    ++  F  G       +      ++LQG+  +      ++
Sbjct: 20  IEARENQVLSMALAQSDRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVIT--FDDQK 77

Query: 255 FDLTVGDYLFTPAGDVHRVK 274
            DL   D L  PA  +H + 
Sbjct: 78  IDLVPEDVLMVPAHKIHAIA 97

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Length = 133

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDL-VVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           A ++   GS    H H    ++  +L G+        G+   +  GD  FT +G+ H ++
Sbjct: 60  ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFH--DNGKDVPIKAGDVCFTDSGESHSIE 117

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11 Length = 278

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 222 AGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
            GS +P         L V++G+ S+    +G+   +  G Y F P G  ++V+
Sbjct: 79  GGSDKPEQDPNAEAVLFVVEGELSLTL--QGQVHAMQPGGYAFIPPGADYKVR 129

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 216 AIVRFKAG-SVEPAHHHTFGHDL-VVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRV 273
           +I    AG  V   H H    ++  +L GK  +     GE+ +L  GD+L        ++
Sbjct: 29  SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFIT--IDGEKIELQAGDWLRIAPDGKRQI 86

Query: 274 K 274
            
Sbjct: 87  S 87

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Length = 394

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 8/102 (7%)

Query: 198 VEMIPGGSMKIIRESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERF 255
           V +       +        S I   KAG    AH H       +++G    + +  G + 
Sbjct: 106 VYLRNPQRKDVSAACGWLFSGIQTMKAGERAGAHRHAASALRFIMEGS-GAYTIVDGHKV 164

Query: 256 DLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDL 297
           +L   D++ TP G  H     E        +  W    D  L
Sbjct: 165 ELGANDFVLTPNGTWHEHGILESGT-----ECIWQDGLDIPL 201

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Length = 394

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 212 SPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGD 269
             T  +++   + G    AH HT      V +G+        G+RFD +  D    PA  
Sbjct: 291 MLTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSI--VGGKRFDWSEHDIFCVPAWT 348

Query: 270 VHR 272
            H 
Sbjct: 349 WHE 351

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Length = 125

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 207 KIIRESPTSAIVRF--KAGSVEPAHHHTFGHDL-VVLQGKKSVWNLTKGERFDLTVGDYL 263
            ++ E+  S +V +    G    +H H  G D   V+ G+        G    L  GD  
Sbjct: 31  SVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ-GNGIVTHLKAGDIA 89

Query: 264 FTPAGDVHRVK 274
               G VH   
Sbjct: 90  IAKPGQVHGAM 100

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha} Length = 112

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 7/74 (9%)

Query: 203 GGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLV-VLQGKKSVWNLTKGERFDLTVGD 261
              +KI R      I+     S     + +   + V V+ G   +          +  GD
Sbjct: 28  RKGLKIER------IISNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGDTAPRVMRPGD 81

Query: 262 YLFTPAGDVHRVKY 275
           +L  PA   HRV +
Sbjct: 82  WLHVPAHCRHRVAW 95

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11 Length = 261

 Score = 43.5 bits (102), Expect = 4e-05
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
             G+ +          L V+ G  +     +G+ F L+ G YL+ P G +    
Sbjct: 69  NGGNQQGFGGEGIETFLYVISGNITAKA--EGKTFALSEGGYLYCPPGSLMTFV 120

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11 Length = 274

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 9/82 (10%), Positives = 18/82 (21%), Gaps = 9/82 (10%)

Query: 193 RELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG 252
             L   ++       I                            + V+ G+  V +    
Sbjct: 51  SILGSPKLGATFVDYIATFHK-------NGQQTTGFGGDGIQTLVYVIDGRLRVSD--GQ 101

Query: 253 ERFDLTVGDYLFTPAGDVHRVK 274
           E  +L  G Y +        + 
Sbjct: 102 ETHELEAGGYAYFTPEMKMYLA 123

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Length = 97

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 202 PGGSMKIIRESPTSAI--VRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER-FDLT 258
           PG    +  ++    +   RF  G     H H+  + +V +     +    +G     LT
Sbjct: 5   PGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLT 64

Query: 259 VGDYLFTPAGDVHRVKYYEETEF-FI 283
            G     P G  H V    +TEF F+
Sbjct: 65  RGVSYTRPEGVEHNVINPSDTEFVFV 90

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme} Length = 303

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 11/112 (9%)

Query: 197 PVEMIPGGSMKIIRESP--TSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER 254
           P  + PG    +       +++ V        P+   T   ++ V++G      +  GE 
Sbjct: 73  PDNIAPGSRRLLTWHDSGASTSRVVLPPKFEAPSGIFTADLEIFVIKGA-----IQLGEW 127

Query: 255 FDLTVGDYLFTPAGDVH---RVKYYEETEFFIKWDGRWDMFFDEDLEAAKKA 303
             L    Y F PAG      +V   EE E     +G   + +    E    A
Sbjct: 128 Q-LNKHSYSFIPAGVRIGSWKVLGGEEAEILWMENGSVPLEYKYAQEDHPDA 178

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 194 ELNPVEMIPGGSMKII--RESPTS-----AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSV 246
                 +  GG  + +  RE P S       +R K G++   H H       ++ G   V
Sbjct: 53  SDTHNRLEKGGYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARV 112

Query: 247 WNL-TKGERF--DLTVGDYLFTPAGDVHRVKYYEETEFFI 283
             +  KG  F  D+  GD  + P+G  H ++  EE   F+
Sbjct: 113 TIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFL 152

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 214 TSAIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR 272
           ++  +     +V        G     V +G+  V  +      +L  GD  F P G   +
Sbjct: 252 STISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQ-IGDYAATELGSGDVAFIPGGVEFK 310

Query: 273 VK 274
             
Sbjct: 311 YY 312

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
3he8_A	149	Ribose-5-phosphate isomerase; CTRPI B, isomerizati	100.0
3ph3_A	169	Ribose-5-phosphate isomerase; alpha-beta-alpha san	100.0
3s5p_A	166	Ribose 5-phosphate isomerase; structural genomics,	100.0
3sgw_A	184	Ribose 5-phosphate isomerase; structural genomics,	100.0
2vvr_A	149	Ribose-5-phosphate isomerase B; RPIB, carbohydrate	100.0
3k7p_A	179	Ribose 5-phosphate isomerase; pentose phosphate pa	100.0
2vvp_A	162	Ribose-5-phosphate isomerase B; RPIB, RV2465C, RAR	100.0
1o1x_A	155	Ribose-5-phosphate isomerase RPIB; structural geno	100.0
4em8_A	148	Ribose 5-phosphate isomerase B; ssgcid, seattle st	100.0
2ppw_A	216	Conserved domain protein; the putative RPIB, PSI-2	100.0
3ono_A	214	Ribose/galactose isomerase; structural genomics, P	100.0
3c5y_A	231	Ribose/galactose isomerase; structural genomics, j	100.0
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.47
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.46
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.44
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.42
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.33
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.33
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.33
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.31
1v70_A	105	Probable antibiotics synthesis protein; structural	99.29
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.29
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.28
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.28
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	99.27
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.27
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.26
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.26
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.25
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.24
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.24
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	99.23
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.22
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.21
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	99.2
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.19
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	99.17
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.17
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	99.17
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.15
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	99.15
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.14
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.14
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.14
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	99.13
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	99.13
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.13
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.12
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	99.11
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.1
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.09
1sef_A	274	Conserved hypothetical protein; structural genomic	99.08
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.07
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.07
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	99.05
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	99.05
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.05
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.04
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	99.02
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.0
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	98.99
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.98
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.98
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	98.98
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.97
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.96
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.95
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.95
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.94
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	98.93
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.93
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.9
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	98.9
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	98.9
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.89
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.89
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	98.88
1sef_A	274	Conserved hypothetical protein; structural genomic	98.86
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.82
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.81
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.8
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.79
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	98.73
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.73
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	98.73
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.72
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.72
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	98.71
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	98.7
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	98.7
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.67
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.67
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.65
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	98.63
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	98.61
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.6
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.59
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	98.58
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	98.57
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	98.52
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.5
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.49
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	98.48
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	98.47
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	98.47
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	98.46
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.45
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.42
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	98.39
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.39
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	98.36
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.34
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	98.34
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	98.33
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	98.31
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	98.31
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.24
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	98.18
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	98.17
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	98.14
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	98.13
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	98.12
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	98.02
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	98.0
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	97.98
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	97.89
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.74
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	97.74
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.6
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	97.59
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	97.51
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	97.51
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.46
3uss_A	211	Putative uncharacterized protein; cupin, three his	97.41
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	97.4
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.25
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	96.92
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	96.88
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	96.78
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	96.71
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	96.62
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	96.54
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	96.5
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	96.42
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	96.4
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	96.12
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	96.1
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	95.89
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	95.82
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	95.75
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	95.72
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	95.62
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	95.61
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	95.43
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	95.14
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	95.0
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	94.93
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	94.93
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	94.91
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	94.83
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	94.28
3iwt_A	178	178AA long hypothetical molybdenum cofactor biosy	93.84
4diq_A	489	Lysine-specific demethylase NO66; structural genom	93.57
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	93.43
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	93.35
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	93.18
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	92.51
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	92.04
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	92.03
3kv5_D	488	JMJC domain-containing histone demethylation prote	92.02
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	91.75
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	91.61
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	90.86
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	90.57
3kv9_A	397	JMJC domain-containing histone demethylation prote	90.19
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	90.06
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	89.39
1uuy_A	167	CNX1, molybdopterin biosynthesis CNX1; chelatase,	88.73
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	88.58
1mkz_A	172	Molybdenum cofactor biosynthesis protein B; MAD, W	88.57
2ypd_A	392	Probable JMJC domain-containing histone demethyla	87.38
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	87.22
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	86.88
1y5e_A	169	Molybdenum cofactor biosynthesis protein B; struct	86.69
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	86.41
1ccw_A	137	Protein (glutamate mutase); coenzyme B12, radical	86.01
2pbq_A	178	Molybdenum cofactor biosynthesis MOG; molybdopteri	85.63
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	84.76
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	84.28
2l2q_A	109	PTS system, cellobiose-specific IIB component (CE;	84.08
2is8_A	164	Molybdopterin biosynthesis enzyme, MOAB; globular	83.78
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	83.67
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	83.25
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	82.99
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	82.52
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	82.38
3eo6_A	106	Protein of unknown function (DUF1255); AFE_2634, s	82.28
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	82.01
1e2b_A	106	Enzyme IIB-cellobiose; phosphotransferase system,	81.55
1pmi_A	440	PMI, phosphomannose isomerase; aldose-ketose isome	80.05
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	80.01

>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*

Probab=100.00  E-value=1.6e-58  Score=391.18  Aligned_cols=141  Identities=35%  Similarity=0.547  Sum_probs=133.9

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN   87 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|++     |||++|.+||++|.+    |+++|||||||||+||||+||
T Consensus         1 MkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN   76 (149)
T 3he8_A            1 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKS----GECDRGIVICGTGLGISIAAN   76 (149)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSSSEEEEEESSSHHHHHHHH
T ss_pred             CEEEEEECchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHhh
Confidence            89999999999999999999999999999999986     599999999999999    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhh
Q 021654           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDK  161 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~  161 (309)
                      |+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++|    +++++.+.|.+++.+
T Consensus        77 Kv~GIRAAl~~d~~sA~~ar~hNnaNVl~lG~rvig~~~A~~iv~~fL~t~F~gg----rh~~Rv~ki~~~e~~  146 (149)
T 3he8_A           77 KVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIVDTWLKAEFQGG----RHATRVGKIGEIEKK  146 (149)
T ss_dssp             TSTTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHHHCCCCCT----HHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHcCCCCCc----chHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999984    667777777766543

>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*

Probab=100.00  E-value=3.2e-58  Score=395.28  Aligned_cols=147  Identities=34%  Similarity=0.518  Sum_probs=134.1

Q ss_pred             CCCCCCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654            7 AAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG   81 (309)
Q Consensus         7 ~~~~~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G   81 (309)
                      +...++|||+|||||+||+||+.|++||+++||||+|||++     |||++|.+||++|.+    |+++|||||||||+|
T Consensus        15 ~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG   90 (169)
T 3ph3_A           15 VPRGSHMKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKS----GECDRGIVICGTGLG   90 (169)
T ss_dssp             ------CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSSSEEEEEESSSHH
T ss_pred             cccCCCCEEEEEeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEcCCcHH
Confidence            45567899999999999999999999999999999999985     599999999999999    999999999999999


Q ss_pred             hhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhh
Q 021654           82 VAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDK  161 (309)
Q Consensus        82 ~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~  161 (309)
                      |||+|||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++||++||+|+|++|    +++++++.|.+++.+
T Consensus        91 ~sIaANKv~GIRAAlc~d~~sA~~aR~hNnANVL~lG~Rvig~~lA~~Iv~~fL~t~F~gg----Rh~~Rv~kI~~~e~~  166 (169)
T 3ph3_A           91 ISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIVDTWLKAEFQGG----RHATRVGKIGEIEKK  166 (169)
T ss_dssp             HHHHHTTSTTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHHHCCCCCT----HHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHcCCCCCC----chHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999984    667777777766543

>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}

Probab=100.00  E-value=1.6e-58  Score=395.61  Aligned_cols=143  Identities=32%  Similarity=0.443  Sum_probs=127.3

Q ss_pred             CCCCCCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654            7 AAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG   81 (309)
Q Consensus         7 ~~~~~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G   81 (309)
                      .+.+.+|||+|||||+||+||+.|++||+++||||+|||++     |||+||.+||++|.+    |+++|||||||||+|
T Consensus        16 ~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~----g~~d~GIliCGTGiG   91 (166)
T 3s5p_A           16 TQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTS----GRADCCILVCGTGIG   91 (166)
T ss_dssp             ---CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHT----TSCSEEEEEESSSHH
T ss_pred             CCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHc----CCCcEEEEEcCCcHH
Confidence            34556699999999999999999999999999999999986     599999999999999    999999999999999


Q ss_pred             hhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhh
Q 021654           82 VAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISC  157 (309)
Q Consensus        82 ~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~  157 (309)
                      |||+|||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++|    +++++++.|..
T Consensus        92 ~sIaANKv~GIRAAlc~d~~sA~laR~hNnANVL~lG~Rvig~~lA~~Iv~~fL~t~F~gg----RH~~RV~kI~~  163 (166)
T 3s5p_A           92 ISIAANKMKGIRCALCSTEYDAEMARKHNNANALALGGRTTGPEVAASILSRFLSTNFEGG----RHAARIAKISA  163 (166)
T ss_dssp             HHHHHHTSTTCCEEECSSHHHHHHHHHTTCCCEEEEETTTSCHHHHHHHHHHHHHCCCCHH----HHHTCCCC---
T ss_pred             HHHHhhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHcCCCCCc----chHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999985    44444444443

>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*

Probab=100.00  E-value=4.5e-58  Score=398.33  Aligned_cols=150  Identities=29%  Similarity=0.420  Sum_probs=137.6

Q ss_pred             cCCCC-CCcEEEEEeCcccHHHHHHHHHHHHhCC--CcEEEecCC------CCcchhHHHHHHhhcCCCCCCCceEEEEe
Q 021654            6 AAAAP-HPLKIIAGADSFGAELKDALVSHLRSLN--IDVEDLGTS------DYYSIGAEVGRRVSSSDSSDTTTRGLVAC   76 (309)
Q Consensus         6 ~~~~~-~~mki~i~~D~~g~~lk~~l~~~l~~~g--~ev~d~G~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~C   76 (309)
                      |++.+ ++|||+|||||+||+||+.|++||+++|  |||+|||++      |||+||.+||++|.+    |+++||||||
T Consensus        22 ~~~~~~~~MkIaIgsDHaG~~LK~~i~~~L~~~G~g~eV~D~G~~s~~e~~DYPd~a~~vA~~V~~----ge~d~GIliC   97 (184)
T 3sgw_A           22 MAATPLPPLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKD----GKVDRALMIC   97 (184)
T ss_dssp             -----CCCEEEEEEECGGGHHHHHHHHHHHTTCTTEEEEEECSCCSTTCCCCHHHHHHHHHHHHHT----TSCSEEEEEE
T ss_pred             cCCCCCCCcEEEEEECchhHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHc----CCCcEEEEEc
Confidence            45555 8899999999999999999999999999  799999986      599999999999999    9999999999


Q ss_pred             cCchhhhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhh
Q 021654           77 GTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENIS  156 (309)
Q Consensus        77 gtG~G~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~  156 (309)
                      |||+||||+|||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++||++||+|+|++   .++++++++.|.
T Consensus        98 GTGiG~sIaANKv~GIRAAlc~d~~sA~laR~HNnANVL~lG~Rvig~elA~~Ivd~fL~t~Feg---ggRH~~RV~kI~  174 (184)
T 3sgw_A           98 GTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIGIELAKRLAGEWLTYRFDQ---KSASAQKVQAIS  174 (184)
T ss_dssp             SSSHHHHHHHHTSTTCCEEECCSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHTTCCCCT---TSHHHHHHHHHH
T ss_pred             CCcHHHhhhhhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEchhhcCHHHHHHHHHHHHcCCCCC---CchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999996   357788888888


Q ss_pred             hhhhhc
Q 021654          157 CFFDKS  162 (309)
Q Consensus       157 ~fl~~s  162 (309)
                      +++.+.
T Consensus       175 ~~E~~~  180 (184)
T 3sgw_A          175 DYEKKF  180 (184)
T ss_dssp             HHHTTC
T ss_pred             HHHHhh
Confidence            776553

>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A

Probab=100.00  E-value=6.1e-58  Score=387.93  Aligned_cols=140  Identities=34%  Similarity=0.495  Sum_probs=133.1

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN   87 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|++     |||++|.+||++|.+    |+++|||||||||+||||+||
T Consensus         2 MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN   77 (149)
T 2vvr_A            2 KKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAG----GEVDGGILICGTGVGISIAAN   77 (149)
T ss_dssp             CEEEEEECTTGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSSSEEEEEESSSHHHHHHHH
T ss_pred             cEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHc----CCCceEEEEeCCcHHHHHHHh
Confidence            89999999999999999999999999999999985     599999999999999    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhh
Q 021654           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFD  160 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~  160 (309)
                      |+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++|    +++++++.|..++.
T Consensus        78 Kv~GIRAal~~d~~sA~~ar~hNnaNVl~lG~rvig~ela~~iv~~fL~t~f~gg----rh~~Rv~ki~~~e~  146 (149)
T 2vvr_A           78 KFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAKMIVDAWLGAQYEGG----RHQQRVEAITAIEQ  146 (149)
T ss_dssp             TSTTCCEEECSSHHHHHHHHHHHCCCEEEEETTTBCHHHHHHHHHHHHHCCCCCT----THHHHHHHHHHHHT
T ss_pred             cCCCeEEEEeCCHHHHHHHHHhCCCcEEEECccccCHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999974    77777777766654

>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A

Probab=100.00  E-value=2.2e-57  Score=392.47  Aligned_cols=145  Identities=26%  Similarity=0.359  Sum_probs=135.3

Q ss_pred             CCCcEEEEEeCcccHHHHHHHHHHHHh--CCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhh
Q 021654           10 PHPLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV   82 (309)
Q Consensus        10 ~~~mki~i~~D~~g~~lk~~l~~~l~~--~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~   82 (309)
                      ++.|||+|||||+||+||+.|++||++  +||||+|||++     |||+||.+||++|.+    |++||||||||||+||
T Consensus        20 ~M~MkIaIgsDhaG~~lK~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~----g~~d~GIliCGTGiG~   95 (179)
T 3k7p_A           20 HMTRRVAIGTDHPAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVAR----KEVEFGVLAAGSGIGM   95 (179)
T ss_dssp             -CCEEEEEEECTGGGGGHHHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHT----TSSSEEEEEESSSHHH
T ss_pred             cCceEEEEEECchHHHHHHHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEccCcHHH
Confidence            456999999999999999999999999  99999999985     599999999999999    9999999999999999


Q ss_pred             hhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhh
Q 021654           83 AIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDK  161 (309)
Q Consensus        83 ~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~  161 (309)
                      ||+|||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++   .++++++++.|..++.+
T Consensus        96 sIaANKv~GIRAAlc~d~~sA~laR~HNnANVL~lG~Rvig~elA~~Ivd~fL~t~Feg---~gRH~~RV~kI~~~E~~  171 (179)
T 3k7p_A           96 SIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREIIITFLQTPFSG---EERHVRRIEKIRAIEAS  171 (179)
T ss_dssp             HHHHHTSTTCCEEECCSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHHH
T ss_pred             hhHhhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHcCCCCC---CCchHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999997   34667777777766554

>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A

Probab=100.00  E-value=3.4e-57  Score=387.88  Aligned_cols=143  Identities=25%  Similarity=0.399  Sum_probs=135.0

Q ss_pred             CcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhh
Q 021654           12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIF   85 (309)
Q Consensus        12 ~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~ia   85 (309)
                      +|||+|||||+||+||+.|++||+++||||+|+|++      |||++|.+||++|.+    |+++|||||||||+||||+
T Consensus         3 ~MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~sia   78 (162)
T 2vvp_A            3 GMRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVA----DPGSLGIVLGGSGNGEQIA   78 (162)
T ss_dssp             CCEEEEEECHHHHHHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHH----STTCEEEEEESSSHHHHHH
T ss_pred             CCEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHc----CCCceEEEEeCCcHHHHHH
Confidence            389999999999999999999999999999999974      599999999999999    9999999999999999999


Q ss_pred             hcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhh
Q 021654           86 ANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDK  161 (309)
Q Consensus        86 aNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~  161 (309)
                      |||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++|   ++++++.+.|..++.+
T Consensus        79 ANKv~GIRAAl~~d~~sA~~ar~hNnaNVL~lG~rvig~elA~~iv~~fL~t~F~gg---~rh~~Rv~ki~~~e~~  151 (162)
T 2vvp_A           79 ANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSKA---QRHQRRIDILAEYERT  151 (162)
T ss_dssp             HHTSTTCCEEECCSHHHHHHHHHTTCCSEEEEEGGGSCHHHHHHHHHHHHHSCCCCC---HHHHHHHHHHHHHHHH
T ss_pred             HhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHcCCCCCC---hhHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999973   4777888878777654

>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1

Probab=100.00  E-value=1.3e-56  Score=380.82  Aligned_cols=137  Identities=36%  Similarity=0.513  Sum_probs=129.0

Q ss_pred             CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhh
Q 021654           11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIF   85 (309)
Q Consensus        11 ~~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~ia   85 (309)
                      ...||+|||||+||+||+.|++||+++||||+|+|++     |||++|.+||++|.+    |+++|||||||||+||||+
T Consensus        11 ~~~~i~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~sia   86 (155)
T 1o1x_A           11 HHVKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILS----NEADFGILLCGTGLGMSIA   86 (155)
T ss_dssp             CCCEEEEEECSTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSCSEEEEEESSSHHHHHH
T ss_pred             cceeEEEeeCchHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHc----CCCceEEEEcCCcHHHHHH
Confidence            3479999999999999999999999999999999984     599999999999999    9999999999999999999


Q ss_pred             hcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhh
Q 021654           86 ANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENI  155 (309)
Q Consensus        86 aNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I  155 (309)
                      |||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++|    +++++.+.|
T Consensus        87 ANKv~GIRAAl~~d~~sA~~ar~hNnANVL~lG~rvig~elA~~Iv~~fL~t~F~gg----Rh~~RV~ki  152 (155)
T 1o1x_A           87 ANRYRGIRAALCLFPDMARLARSHNNANILVLPGRLIGAELAFWIVDTFLSTPFDGG----RHERRIRKI  152 (155)
T ss_dssp             HTTSTTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHHHCCCCCT----THHHHHHHH
T ss_pred             hhcCCCeEEEEeCCHHHHHHHHHcCCCcEEEECCcccCHHHHHHHHHHHHcCCCCCc----cHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999973    555555544

>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}

Probab=100.00  E-value=1.8e-56  Score=377.52  Aligned_cols=133  Identities=30%  Similarity=0.421  Sum_probs=124.4

Q ss_pred             CcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhh
Q 021654           12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIF   85 (309)
Q Consensus        12 ~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~ia   85 (309)
                      +|||+|||||+||+||+.|++||+++||||+|+|++      |||++|.+||++|.      +++|||||||||+||||+
T Consensus         7 ~mkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~------~~d~GIliCGTGiG~sia   80 (148)
T 4em8_A            7 VKRVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVS------DTSFGVLICGTGIGMSIA   80 (148)
T ss_dssp             CSEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCB------TTBEEEEEESSSHHHHHH
T ss_pred             eeEEEEEECchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHH------HhCeEEEEccCcHHHHHH
Confidence            489999999999999999999999999999999974      49999999999998      379999999999999999


Q ss_pred             hcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhh
Q 021654           86 ANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEEN  154 (309)
Q Consensus        86 aNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~  154 (309)
                      |||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++|    +++++.+.
T Consensus        81 ANKv~GIRAAl~~d~~sA~~ar~hNnANVL~lG~rvig~~lA~~iv~~fL~t~F~gg----rh~~Rv~k  145 (148)
T 4em8_A           81 ANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTAQSVLYTFMTTAFLGG----RHAVRVQK  145 (148)
T ss_dssp             HTTSTTCCEEECSSHHHHHHHHHHHCCCEEEEETTTSCHHHHHHHHHHHHHCCCCCT----HHHHHHHH
T ss_pred             HhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEchhhhCHHHHHHHHHHHHcCCCCCC----chHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999985    44444443

>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}

Probab=100.00  E-value=1e-54  Score=387.01  Aligned_cols=150  Identities=20%  Similarity=0.263  Sum_probs=139.3

Q ss_pred             CcEEEEEeCcccHHHH-----HHHHHHHHhCCCcEEEecCC--------CCcchhHHHHHHhhcCCCCCCCceEEEEecC
Q 021654           12 PLKIIAGADSFGAELK-----DALVSHLRSLNIDVEDLGTS--------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGT   78 (309)
Q Consensus        12 ~mki~i~~D~~g~~lk-----~~l~~~l~~~g~ev~d~G~~--------~y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt   78 (309)
                      .|||+|||||+ ++||     +.|++||+++||||+|+|++        |||++|.+||++|.+    |+++|||+||||
T Consensus         3 ~MkIaIgsDha-~~lKn~ilk~~i~~~L~~~G~eV~D~G~~s~~d~~s~DYPd~a~~vA~~V~~----g~~d~GIliCGT   77 (216)
T 2ppw_A            3 AMKIALINENS-QASKNHIIYDSLKEATDKKGYQLFNYGMRGEEGESQLTYVQNGLMAAILLNT----KAVDFVVTGCGT   77 (216)
T ss_dssp             CCEEEECCCTT-TGGGHHHHHHHHHHHHHHHTCEEEECSCCSCTTCCCCCHHHHHHHHHHHHHT----TSCSEEEEEESS
T ss_pred             CcEEEEEcCCh-HhhhhhhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHc----CCCCeEEEEcCC
Confidence            59999999999 8988     89999999999999999985        399999999999999    999999999999


Q ss_pred             chhhhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEecc-ccC--CHHHH-HHHHHHHHcCCCCCCCCCCCCChhhhh
Q 021654           79 GVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSG-MST--SKESA-VEILDTWLKTPFKAPCPASGFKPWEEN  154 (309)
Q Consensus        79 G~G~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~-~~~--~~~~a-~~i~~~~l~~~f~~~~p~~~~~~~~~~  154 (309)
                      |+||||+|||+||||||+|+|+++|+|+|+||||||||||+ |++  |+++| ++|+++||+|+|+||||+++.+|..+ 
T Consensus        78 GiG~sIAANKv~GIRAAlc~d~~sA~laR~HNnANVL~lG~~rvi~~g~ela~~~Iv~~fL~t~F~gG~~~~R~~~~~r-  156 (216)
T 2ppw_A           78 GVGAMLALNSFPGVVCGLAVDPTDAYLYSQINGGNALSIPYAKGFGWGAELTLKLMFERLFAEEMGGGYPRERVIPEQR-  156 (216)
T ss_dssp             SHHHHHHHTTSTTCCEEECSSHHHHHHHHHHTCCSEEEEESSTTCCTTHHHHHHHHHHHHHSSCTTCCSSGGGHHHHHH-
T ss_pred             cHHHHHHhhcCCCeEEEEeCCHHHHHHHHHhcCceEEEeCCceecccCHHHHHHHHHHHHHcCCcCCCCChHHHhHHHH-
Confidence            99999999999999999999999999999999999999999 988  99999 69999999999999999999998876 


Q ss_pred             hhhhhhhcccccccccc
Q 021654          155 ISCFFDKSMTEMPLIGK  171 (309)
Q Consensus       155 I~~fl~~sl~el~~i~~  171 (309)
                          ..+.|+++..+..
T Consensus       157 ----n~~~l~~~~~~~~  169 (216)
T 2ppw_A          157 ----NARILNEVKQITH  169 (216)
T ss_dssp             ----HHHHHHHHHHHHS
T ss_pred             ----hHHHHHHHHHHhh
Confidence                3555666665553

>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}

Probab=100.00  E-value=2.8e-54  Score=383.68  Aligned_cols=152  Identities=23%  Similarity=0.300  Sum_probs=142.4

Q ss_pred             CCcEEEEEeCcccHHHHH-----HHHHHHHhCCCcEEEecC--C-----CCcchhHHHHHHhhcCCCCCCCceEEEEecC
Q 021654           11 HPLKIIAGADSFGAELKD-----ALVSHLRSLNIDVEDLGT--S-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGT   78 (309)
Q Consensus        11 ~~mki~i~~D~~g~~lk~-----~l~~~l~~~g~ev~d~G~--~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt   78 (309)
                      +.|||+|||||+ ++||+     .|++||+++||||+|+|+  +     |||++|.+||++|.+    |+++|||+||||
T Consensus         2 ~~MkIaigsDha-~~lK~~~i~~~l~~~L~~~G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~----g~~d~GIliCGT   76 (214)
T 3ono_A            2 NAMKIALMMENS-QAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNS----KAVDFVVTGCGT   76 (214)
T ss_dssp             CCCEEEECCCGG-GGGGHHHHHHHHHHHHHHTTCEEEECSCSSTTSSCCCHHHHHHHHHHHHHT----TSCSEEEEEESS
T ss_pred             CccEEEEECCCc-HHHHChhHHHHHHHHHHHCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEcCC
Confidence            569999999999 99999     999999999999999993  3     699999999999999    999999999999


Q ss_pred             chhhhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccc---cCCHHHHHH-HHHHHHcCCCCCCCCCCCCChhhhh
Q 021654           79 GVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM---STSKESAVE-ILDTWLKTPFKAPCPASGFKPWEEN  154 (309)
Q Consensus        79 G~G~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~---~~~~~~a~~-i~~~~l~~~f~~~~p~~~~~~~~~~  154 (309)
                      |+||||+|||+||||||+|+|+++|+|+|+||||||||||+|   ++|+++|.+ |+++||+++|+||||.++.+|..+ 
T Consensus        77 GiG~siaANKv~GIRAAlc~d~~sA~laR~hNnANVL~lG~rr~~~ig~elA~~~Ivd~fL~t~F~gGr~~~R~~~~~r-  155 (214)
T 3ono_A           77 GQGALMSCNLHPGVVCGYCLEPSDAFLFNQINNGNAISLAFAKGFGWAGELNVRYIFEKAFTGKRGEGYPIERAAPQQA-  155 (214)
T ss_dssp             SHHHHHHHHTSTTCCEEECSSHHHHHHHHHHTCCSEEEEESSTTCCTTHHHHHHHHHHHHSSSCCCCCSSGGGHHHHHH-
T ss_pred             cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHcCCcEEEecCcccccccHHHHHHHHHHHHHcCCcCCCCChhHHHHHHH-
Confidence            999999999999999999999999999999999999999996   799999985 999999999999999999998888 


Q ss_pred             hhhhhhhccccccccccC
Q 021654          155 ISCFFDKSMTEMPLIGKN  172 (309)
Q Consensus       155 I~~fl~~sl~el~~i~~~  172 (309)
                          ..+.|+++.++++.
T Consensus       156 ----~~~il~~v~~~~~~  169 (214)
T 3ono_A          156 ----NAAILNNVKAAVAK  169 (214)
T ss_dssp             ----HHHHHHHHHHHHSC
T ss_pred             ----HHHHHHHHHHHhcC
Confidence                57777777777653

>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=2.7e-51  Score=366.68  Aligned_cols=152  Identities=20%  Similarity=0.248  Sum_probs=138.9

Q ss_pred             CCcEEEEEeCcccH--HHHHHHHHHHHhCCCcEEEecCC--------CCcchhHHHHHHhhcCCCCCCCceEEEEecCch
Q 021654           11 HPLKIIAGADSFGA--ELKDALVSHLRSLNIDVEDLGTS--------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGV   80 (309)
Q Consensus        11 ~~mki~i~~D~~g~--~lk~~l~~~l~~~g~ev~d~G~~--------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~   80 (309)
                      |+.+|++++|.+|.  .||+.|++||+++||||+|+|++        |||++|.+||++|.+    |+++|||+|||||+
T Consensus        20 mkiali~~~sqa~kN~~lKe~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~----g~~d~GIliCGTGi   95 (231)
T 3c5y_A           20 MKIALIIENSQAAKNAVVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNS----GAADFVVTGCGTGM   95 (231)
T ss_dssp             CEEEECCCGGGGGGHHHHHHHHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHH----TSCSEEEEEESSSH
T ss_pred             ceEEEEecCCHhhhHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHc----CCCCeEEEEcCCcH
Confidence            44456678999999  89999999999999999999985        499999999999999    99999999999999


Q ss_pred             hhhhhhcCCCceEEEEeCCHHHHHHhHhhcCceEeEecc-ccC--CHHHH-HHHHHHHHcCCCCCCCCCCCCChhhhhhh
Q 021654           81 GVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSG-MST--SKESA-VEILDTWLKTPFKAPCPASGFKPWEENIS  156 (309)
Q Consensus        81 G~~iaaNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~-~~~--~~~~a-~~i~~~~l~~~f~~~~p~~~~~~~~~~I~  156 (309)
                      ||||+|||+||||||+|+|+++|+|+|+||||||||||+ |++  |+++| ++|+++||+|+|+||||+++.+|..+   
T Consensus        96 G~sIAANKv~GIRAAlc~d~~sA~laR~HNnANVL~lGa~rvig~g~elA~~~Ivd~fL~teFeGGypq~R~~~~~r---  172 (231)
T 3c5y_A           96 GSMLAANAMPGVFCGLVIDPTDAFLFGQINDGNAISMPYSKGFGWAAELNLQDVYRKLFDGERGLGYPRERAEIMRK---  172 (231)
T ss_dssp             HHHHHHHTSTTCCEEECCSHHHHHHHHHHTCCSEEEEESSTTCCTTHHHHHHHHHHHHHSSCCCCCSSGGGHHHHHH---
T ss_pred             HHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCccEEEECCceecccCHHHHHHHHHHHHHcCCcCCCCCchhhhHHHH---
Confidence            999999999999999999999999999999999999999 988  99999 69999999999999999999998877   


Q ss_pred             hhhhhcccccccccc
Q 021654          157 CFFDKSMTEMPLIGK  171 (309)
Q Consensus       157 ~fl~~sl~el~~i~~  171 (309)
                        ..+.|+++..+..
T Consensus       173 --n~~iL~~~k~~~~  185 (231)
T 3c5y_A          173 --NRGILRELKDASC  185 (231)
T ss_dssp             --HHHHHHHHHHHHB
T ss_pred             --HHHHHHHHHHHhc
Confidence              4556666666653

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.47  E-value=3.1e-13  Score=105.14  Aligned_cols=83  Identities=22%  Similarity=0.196  Sum_probs=70.1

Q ss_pred             cCCceEEEeeeCCCe--EEEEEcCCCcCCCeecCCce-EEEEEecEEEEEEeeCC--eEEEecCCcEEEECCCCeEEEEE
Q 021654          201 IPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHTFGH-DLVVLQGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKY  275 (309)
Q Consensus       201 ~pgg~~~il~~~~~~--~~~~l~pG~~~p~H~H~~~e-~vyVlsG~l~v~i~~~~--~~~~L~pGD~v~IP~g~~H~~~n  275 (309)
                      +|++..+++......  ..++++||...++|.|+..+ ++||++|++++++  ++  +.+.|++||++|+|++++|+++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~~~--~~g~~~~~l~~Gd~~~~p~~~~H~~~N   81 (97)
T 2fqp_A            4 RPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLET--PEGSVTSQLTRGVSYTRPEGVEHNVIN   81 (97)
T ss_dssp             CCBCEEEEEEESSSEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEEEE--TTEEEEEEECTTCCEEECTTCEEEEEC
T ss_pred             cCCCceeEEEcCCeEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEEEe--CCCCEEEEEcCCCEEEeCCCCcccCEe
Confidence            567777777665543  67889999999999999975 7999999999964  46  78999999999999999999999


Q ss_pred             cCCceEEEEE
Q 021654          276 YEETEFFIKW  285 (309)
Q Consensus       276 ~gd~~~~i~~  285 (309)
                      .+++++.+++
T Consensus        82 ~g~~~~~~l~   91 (97)
T 2fqp_A           82 PSDTEFVFVE   91 (97)
T ss_dssp             CSSSCEEEEE
T ss_pred             CCCCcEEEEE
Confidence            9988876544

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.46  E-value=1e-12  Score=104.36  Aligned_cols=102  Identities=17%  Similarity=0.151  Sum_probs=76.7

Q ss_pred             eecCCCCCeeecCCceEEEeeeCCC--eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECC
Q 021654          190 VKNRELNPVEMIPGGSMKIIRESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPA  267 (309)
Q Consensus       190 ~~~~e~~~~~~~pgg~~~il~~~~~--~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~  267 (309)
                      ++..+.......+|...+++.....  ...+++.||...++|+|+..|++||++|++++.  ++++.+.|++||++++|+
T Consensus         9 ~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~--~~~~~~~l~~Gd~~~ip~   86 (116)
T 2pfw_A            9 SFGEQTEIEDIGGGLKRQMLGFNHELMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHVN--VDGVIKVLTAGDSFFVPP   86 (116)
T ss_dssp             ECTTTSCCEECSTTEEEEEEEEETTEEEEEEEECTTEEEEEECCSSEEEEEEEEECEEEE--ETTEEEEECTTCEEEECT
T ss_pred             ecccCceeeeCCCCeEEEEEecCCceEEEEEEECCCCcCCcEECCcceEEEEEeeEEEEE--ECCEEEEeCCCCEEEECc
Confidence            3444444444455656666643333  266789999999999999999999999999995  469999999999999999


Q ss_pred             CCeEEEEEcCCceEEEEEcCcccccc
Q 021654          268 GDVHRVKYYEETEFFIKWDGRWDMFF  293 (309)
Q Consensus       268 g~~H~~~n~gd~~~~i~~~~~~~i~~  293 (309)
                      +++|+++|.++..++..+......|+
T Consensus        87 ~~~H~~~~~~~~~~l~v~~p~~~d~~  112 (116)
T 2pfw_A           87 HVDHGAVCPTGGILIDTFSPAREDFV  112 (116)
T ss_dssp             TCCEEEEESSCEEEEEEEESCCGGGC
T ss_pred             CCceeeEeCCCcEEEEEECCchhhhh
Confidence            99999999987766555444333343

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.44  E-value=1e-12  Score=106.10  Aligned_cols=96  Identities=23%  Similarity=0.296  Sum_probs=75.2

Q ss_pred             EeecCCCCCeeecCCceEEEeeeCCCe-EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECC
Q 021654          189 LVKNRELNPVEMIPGGSMKIIRESPTS-AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPA  267 (309)
Q Consensus       189 v~~~~e~~~~~~~pgg~~~il~~~~~~-~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~  267 (309)
                      +.+....+.....+|...+++...... ..+++.||...++|+|+..|++||++|+++++  ++++.+.|++||++++|+
T Consensus        16 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~--~~~~~~~l~~Gd~~~ip~   93 (126)
T 4e2g_A           16 FYDLTEVRSFSPLPGFAMQAIQGKNLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELT--IGEETRVLRPGMAYTIPG   93 (126)
T ss_dssp             EEEGGGSCCBCSSTTEEEEEEECSSCEEEEEEECTTCEEEEECCSSEEEEEEEEECEEEE--ETTEEEEECTTEEEEECT
T ss_pred             hhhcccceecccCCCeEEEEEeCCCeEEEEEEECCCCcCCCccCCCceEEEEEEeEEEEE--ECCEEEEeCCCCEEEECC
Confidence            344444454545567777776554333 67899999999999999999999999999995  468999999999999999


Q ss_pred             CCeEEEEEcCC-ceEEEEEc
Q 021654          268 GDVHRVKYYEE-TEFFIKWD  286 (309)
Q Consensus       268 g~~H~~~n~gd-~~~~i~~~  286 (309)
                      |++|+++|.++ ..++..+.
T Consensus        94 ~~~H~~~~~~~~~~~l~v~~  113 (126)
T 4e2g_A           94 GVRHRARTFEDGCLVLDIFS  113 (126)
T ss_dssp             TCCEEEECCTTCEEEEEEEE
T ss_pred             CCcEEeEECCCCEEEEEEEC
Confidence            99999999988 44443333

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.42  E-value=1.5e-12  Score=104.58  Aligned_cols=67  Identities=22%  Similarity=0.321  Sum_probs=61.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..++++||...++|+|+..|++||++|+++++  ++++++.|++||++++|++++|+++|.++..++++
T Consensus        39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~~--i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~  105 (114)
T 3fjs_A           39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIG--VDGAQRRLHQGDLLYLGAGAAHDVNAITNTSLLVT  105 (114)
T ss_dssp             EEEEECTTCEEEEECCSSCEEEEEEESCEEEE--ETTEEEEECTTEEEEECTTCCEEEEESSSEEEEEE
T ss_pred             EEEEECCCCccCceeCCCcEEEEEEECEEEEE--ECCEEEEECCCCEEEECCCCcEEEEeCCCcEEEEE
Confidence            67899999999999999999999999999995  46999999999999999999999999998887643

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.33  E-value=1.9e-11  Score=97.55  Aligned_cols=67  Identities=10%  Similarity=0.173  Sum_probs=59.4

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEE-EecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERF-DLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~-~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..+++.||...++|+|+..|++||++|++++.  .+++.+ .|++||++++|+|++|+++|.++.++.+.
T Consensus        30 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~--i~~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~l   97 (117)
T 2b8m_A           30 NHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLT--LEDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFF   97 (117)
T ss_dssp             EEEEEETTCBCCCEECSSCEEEEEEESEEEEE--ETTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEE
T ss_pred             EEEEECCCCcCCCEeCCCcEEEEEEeCEEEEE--ECCEEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEE
Confidence            56788999999999999999999999999995  468888 99999999999999999999988765433

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.33  E-value=3.4e-12  Score=104.96  Aligned_cols=70  Identities=19%  Similarity=0.313  Sum_probs=61.2

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      ..+++.||...++|+|+..|++||++|+++++...+++++.+++||++++|+|++|+++|.++.++.+++
T Consensus        42 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~l~  111 (145)
T 3ht1_A           42 TEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTCRFLV  111 (145)
T ss_dssp             EEEEEEEEEECCCEECSSCEEEEEEEECEEEEEGGGTEEEEECTTCEEEECTTCCBEEECCTTCCEEEEE
T ss_pred             EEEEECCCCcCCCccCCCceEEEEEEeEEEEEEeECCEEEEECCCCEEEECCCCeEEeEcCCCCCEEEEE
Confidence            5678899999999999999999999999999511679999999999999999999999999877655443

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.33  E-value=1.5e-11  Score=97.38  Aligned_cols=78  Identities=14%  Similarity=0.192  Sum_probs=64.3

Q ss_pred             CceEEEeeeCCCe--EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          203 GGSMKIIRESPTS--AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       203 gg~~~il~~~~~~--~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      |...+.+......  ..+++.||...++|+|+..|++||++|+++++  .+++.+.+++||++++|+|++|+++|.++..
T Consensus        28 ~~~~~~l~~~~~~~~~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~~--~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~  105 (115)
T 1yhf_A           28 QMLSRTLVQRQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEIT--IDQETYRVAEGQTIVMPAGIPHALYAVEAFQ  105 (115)
T ss_dssp             CEEEEEEEEETTEEEEEEEECTTCEEEEECCSSEEEEEEEESEEEEE--ETTEEEEEETTCEEEECTTSCEEEEESSCEE
T ss_pred             CeEEEEEEeCCceEEEEEEECCCCccCCEECCCcEEEEEEeCEEEEE--ECCEEEEECCCCEEEECCCCCEEEEECCCce
Confidence            3444444433332  56789999999999999999999999999995  4689999999999999999999999998766


Q ss_pred             EE
Q 021654          281 FF  282 (309)
Q Consensus       281 ~~  282 (309)
                      ++
T Consensus       106 ~~  107 (115)
T 1yhf_A          106 ML  107 (115)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.31  E-value=1.3e-11  Score=99.56  Aligned_cols=68  Identities=19%  Similarity=0.278  Sum_probs=58.4

Q ss_pred             EEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..+++.||...++|+|+. .|.+||++|++++++ .+++++.|++||++++|+|++|++.|.++.++.++
T Consensus        42 ~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~~~-~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l  110 (125)
T 3h8u_A           42 VVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ-GNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFIFV  110 (125)
T ss_dssp             EEEEECTTCEECCC-CTTCEEEEEEEECEEEEEC-STTCEEEEETTEEEEECTTCCCEEEECSSSCEEEE
T ss_pred             EEEEECCCCcCCcccCCCCeEEEEEEEeEEEEEE-CCCeEEEeCCCCEEEECCCCEEEeEeCCCCCEEEE
Confidence            568899999999999996 566889999999953 16899999999999999999999999988776544

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.29  E-value=2.4e-11  Score=93.45  Aligned_cols=68  Identities=22%  Similarity=0.247  Sum_probs=59.7

Q ss_pred             EEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      ..+++.||...++|+|+. .|++||++|+++++  .+++.+.+++||++++|+|++|+++|.++.++.+++
T Consensus        31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~~--~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~~   99 (105)
T 1v70_A           31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVR--VGEEEALLAPGMAAFAPAGAPHGVRNESASPALLLV   99 (105)
T ss_dssp             EEEEECTTCEEEEECCSSCEEEEEEEESCEEEE--ETTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEE
T ss_pred             EEEEECCCCcCCccCCCCCcEEEEEEeCEEEEE--ECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEE
Confidence            567899999999999996 56799999999995  468999999999999999999999999877765544

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.29  E-value=3.3e-11  Score=103.41  Aligned_cols=69  Identities=14%  Similarity=0.146  Sum_probs=61.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC-CceEEEEEc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~i~~~  286 (309)
                      ..+++.||...++|+|+..|++||++|+++++  ++++++.|++||++++|++++|+++|.+ +.++.+++.
T Consensus        59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~--i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l~i  128 (167)
T 3ibm_A           59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEVV--LDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLGFLCI  128 (167)
T ss_dssp             EEEEECTTCBCCCBBCSSCEEEEEEESEEEEE--ETTEEEEECTTCEEEECTTCCEEEEEESSSCCEEEEEE
T ss_pred             EEEEECCCCCCCCccCCCcEEEEEEeCEEEEE--ECCEEEEECCCCEEEECCCCcEEEEeCCCCCCEEEEEE
Confidence            56789999999999999999999999999995  5699999999999999999999999998 777654443

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.28  E-value=1.2e-11  Score=105.16  Aligned_cols=69  Identities=14%  Similarity=0.201  Sum_probs=61.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      ..+++.||...++|+|+..|++||++|+++++  ++++++.|++||++++|++++|+++|.+++++.+++.
T Consensus        47 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v~--v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~~l~i  115 (156)
T 3kgz_A           47 RYFEVDEGGYSTLERHAHVHAVMIHRGHGQCL--VGETISDVAQGDLVFIPPMTWHQFRANRGDCLGFLCV  115 (156)
T ss_dssp             EEEEEEEEEECCCBBCSSCEEEEEEEEEEEEE--ETTEEEEEETTCEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             EEEEECCCCccCceeCCCcEEEEEEeCEEEEE--ECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            46788999999999999999999999999995  5699999999999999999999999999877654443

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.28  E-value=5.1e-11  Score=96.22  Aligned_cols=75  Identities=21%  Similarity=0.393  Sum_probs=64.4

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcCccccccch
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDE  295 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~~~i~~~e  295 (309)
                      ...++.||...++|+|+..|++||++|+++++  ++++.+.+++||++++|+|++|++.|.++.++.+     +.+++++
T Consensus        37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~~--i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~-----~~i~f~~  109 (128)
T 4i4a_A           37 AWCIVRPETKSFRHSHNEYELFIVIQGNAIIR--INDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHF-----YTIWWDK  109 (128)
T ss_dssp             EEEEECTTEECCCBCCSSEEEEEEEESEEEEE--ETTEEEEEETTCEEEECTTCCEEEEECSSSCEEE-----EEEEECH
T ss_pred             EEEEECCCCccCCEecCCeEEEEEEeCEEEEE--ECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEE-----EEEEECH
Confidence            56788999999999999999999999999995  4699999999999999999999999988776543     2456666


Q ss_pred             hH
Q 021654          296 DL  297 (309)
Q Consensus       296 ~~  297 (309)
                      ++
T Consensus       110 ~~  111 (128)
T 4i4a_A          110 ES  111 (128)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=99.27  E-value=9.8e-12  Score=104.44  Aligned_cols=93  Identities=25%  Similarity=0.318  Sum_probs=77.9

Q ss_pred             cCCceEEEeeeCCC----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeE--EEecCCcEEEECCCCeEE-E
Q 021654          201 IPGGSMKIIRESPT----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHR-V  273 (309)
Q Consensus       201 ~pgg~~~il~~~~~----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~--~~L~pGD~v~IP~g~~H~-~  273 (309)
                      .+|.+.+++..++.    ..+++++||...|.|+|+..|++|||+|++++  ..++..  +.+++||++++|+|..|. .
T Consensus        28 ~~Gv~~~~L~~~~~~g~~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~--~~g~~~~~~~~~~Gd~~~~p~g~~H~p~  105 (145)
T 2o1q_A           28 TGGIRWKLLHVSPEMGSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV--RGGKAAGGDTAIAPGYGYESANARHDKT  105 (145)
T ss_dssp             ESCCEEEEEEEETTTTEEEEEEEECTTEEECCEEESSCEEEEEEEEEEEE--TTCGGGTSEEEESSEEEEECTTCEESCC
T ss_pred             CCCcEEEEeeECCCcccEEEEEEECCCCCCCccCCCCCEEEEEEEeEEEE--cCCCEecceEeCCCEEEEECcCCccCCe
Confidence            57777887765543    37899999999999999999999999999998  444555  899999999999999999 7


Q ss_pred             EEcCCceEEEEEcCccccccchh
Q 021654          274 KYYEETEFFIKWDGRWDMFFDED  296 (309)
Q Consensus       274 ~n~gd~~~~i~~~~~~~i~~~e~  296 (309)
                      .+.+++.+++.+.+.+ .|++++
T Consensus       106 ~~~e~~~~l~~~~gp~-~f~~~~  127 (145)
T 2o1q_A          106 EFPVASEFYMSFLGPL-TFVKPD  127 (145)
T ss_dssp             EEEEEEEEEEEEESCE-EEECTT
T ss_pred             ECCCCeEEEEEECCcc-eecCCC
Confidence            7677888899999998 566654

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.27  E-value=1.5e-11  Score=105.81  Aligned_cols=69  Identities=12%  Similarity=0.145  Sum_probs=61.7

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      .++++.||...++|+|+..|++||++|+++++  ++++++.|++||++++|++++|+++|.++.++.+.+.
T Consensus        56 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~~--v~g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~~l~i  124 (166)
T 3jzv_A           56 RYFEVGPGGHSTLERHQHAHGVMILKGRGHAM--VGRAVSAVAPYDLVTIPGWSWHQFRAPADEALGFLCM  124 (166)
T ss_dssp             EEEEEEEEEECCCBBCSSCEEEEEEEECEEEE--ETTEEEEECTTCEEEECTTCCEEEECCTTSCEEEEEE
T ss_pred             EEEEECCCCccCceeCCCcEEEEEEeCEEEEE--ECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEEEE
Confidence            56789999999999999999999999999995  5699999999999999999999999999877654443

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.26  E-value=4.6e-11  Score=103.82  Aligned_cols=141  Identities=13%  Similarity=0.032  Sum_probs=92.1

Q ss_pred             HHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhccccccccccCCCCCCCCCCCccceeEEeecCCCCC---e-eecCCce
Q 021654          130 ILDTWLKTPFKAPCPASGFKPWEENISCFFDKSMTEMPLIGKNDKLDSDSSSSTCSICCLVKNRELNP---V-EMIPGGS  205 (309)
Q Consensus       130 i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~sl~el~~i~~~~~~~~~~~~~~~~~~~v~~~~e~~~---~-~~~pgg~  205 (309)
                      .+..|.+..-.     .-.......|+++++.++..|..-..++.  ...+       .+++..+...   . ....+..
T Consensus        39 ~ls~~e~g~~~-----~p~~~~l~~ia~~l~~~~~~l~~~~~~~~--~~~~-------~~~~~~e~~~~~~~~~~~~~~~  104 (198)
T 2bnm_A           39 TVAAWENGEGG-----ELTLTQLGRIAHVLGTSIGALTPPAGNDL--DDGV-------IIQMPDERPILKGVRDNVDYYV  104 (198)
T ss_dssp             HHHHHHTTTCT-----TCBHHHHHHHHHHTTSCTGGGSCCCCCCC--BTTB-------CCCCGGGCCEECCSTTCSTTEE
T ss_pred             HHHHHHcCCCC-----CCCHHHHHHHHHHhCCCHHHEEccCCCCc--ccCc-------eEEeecccccccccccCCCceE
Confidence            36666654331     11234567789999998888765332100  0111       2334333322   1 1122333


Q ss_pred             EEEeeeCC-C----eEEEEEcCCCcCC---CeecCCceEEEEEecEEEEEEeeCC----eEEEecCCcEEEECCCCeEEE
Q 021654          206 MKIIRESP-T----SAIVRFKAGSVEP---AHHHTFGHDLVVLQGKKSVWNLTKG----ERFDLTVGDYLFTPAGDVHRV  273 (309)
Q Consensus       206 ~~il~~~~-~----~~~~~l~pG~~~p---~H~H~~~e~vyVlsG~l~v~i~~~~----~~~~L~pGD~v~IP~g~~H~~  273 (309)
                      ...+.... .    ...++++||...+   +|+|+..|++||++|++++++  ++    +.+.|++||++++|++++|++
T Consensus       105 ~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~~~--~~~~~~~~~~l~~GD~~~~~~~~~H~~  182 (198)
T 2bnm_A          105 YNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKW--GDKENPKEALLPTGASMFVEEHVPHAF  182 (198)
T ss_dssp             EEECCCCTTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEE--SCTTSCEEEEECTTCEEEECTTCCEEE
T ss_pred             EEeeccCCCCCcceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEEEE--CCcCCcccEEECCCCEEEeCCCCceEE
Confidence            44443321 1    2667899998876   799999999999999999965  57    999999999999999999999


Q ss_pred             EEc-CCceEEEEEc
Q 021654          274 KYY-EETEFFIKWD  286 (309)
Q Consensus       274 ~n~-gd~~~~i~~~  286 (309)
                      +|. ++.++.++|.
T Consensus       183 ~n~~~~~~~~~l~v  196 (198)
T 2bnm_A          183 TAAKGTGSAKLIAV  196 (198)
T ss_dssp             EESTTSCCEEEEEE
T ss_pred             EecCCCCCeEEEEE
Confidence            999 8877765543

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.26  E-value=2.3e-11  Score=95.31  Aligned_cols=69  Identities=19%  Similarity=0.214  Sum_probs=60.1

Q ss_pred             EEEEEcCCCcCCCe--ecC-CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKAGSVEPAH--HHT-FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H--~H~-~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      ..+++.||...++|  +|+ ..|++||++|+++++  ++++.+.|++||++++|++++|+++|.++.++.+.+.
T Consensus        24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~~--~~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~~v   95 (113)
T 2gu9_A           24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEAI--VDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKTVNF   95 (113)
T ss_dssp             EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEEE--ETTEEEEECTTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             EEEEECCCCccCCcccccCCCcEEEEEEeCEEEEE--ECCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEEEEE
Confidence            55688999998888  999 788899999999995  4699999999999999999999999998776655444

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.25  E-value=4.6e-11  Score=101.21  Aligned_cols=67  Identities=18%  Similarity=0.294  Sum_probs=59.5

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC---------eEEEecCCcEEEECCCCeEEEEEcC-CceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG---------ERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~---------~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~i~  284 (309)
                      ..++++||...++|+|+..|++||++|++++++  ++         +++.|++||++++|+|++|+++|.+ +.++.++
T Consensus        44 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~~--~~~~~~~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~~l  120 (163)
T 1lr5_A           44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLM--GSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVL  120 (163)
T ss_dssp             EEEEECTTCBCCEEEESSCEEEEEEECCEEEEE--CCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEE
T ss_pred             EEEEECCCCcCCCeECCCCeEEEEEeCEEEEEE--CCccccccCccEEEEeCCCCEEEECCCCcEEeEeCCCCCCEEEE
Confidence            567899999999999999999999999999965  46         8999999999999999999999998 6665443

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.24  E-value=5.2e-11  Score=97.84  Aligned_cols=97  Identities=21%  Similarity=0.330  Sum_probs=74.0

Q ss_pred             EEeecCCCCCeeec-----CCce-EE-EeeeC--CC-e---EEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCCe
Q 021654          188 CLVKNRELNPVEMI-----PGGS-MK-IIRES--PT-S---AIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKGE  253 (309)
Q Consensus       188 ~v~~~~e~~~~~~~-----pgg~-~~-il~~~--~~-~---~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~~  253 (309)
                      .|+|+.+.......     .|+. ++ ++...  +. .   ..++++||...++|+|+ ..|++||++|+++++  ++++
T Consensus        19 ~v~r~~~~~~~~~~~~~~~~g~~~~~~ll~p~~~~~~~~~~~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~~--i~~~   96 (133)
T 1o4t_A           19 MVVRSSEITPERISNMRGGKGEVEMAHLLSKEAMHNKARLFARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFH--DNGK   96 (133)
T ss_dssp             CEEEGGGSCCEEEESGGGCSSEEEEEECSCTTTTTTSEEEEEEEEECTTCEEEEEECCSEEEEEEEEESEEEEE--ETTE
T ss_pred             EEEEhhhCCEEEecCccCCCCeEEEEEccChhhCCCceEEEEEEEECCCCccCceECCCccEEEEEEeCEEEEE--ECCE
Confidence            47888887766543     2222 23 33322  11 1   46789999999999998 578899999999995  4699


Q ss_pred             EEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          254 RFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       254 ~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      ++.|++||++++|++++|++.|.++.++.++|.
T Consensus        97 ~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~v  129 (133)
T 1o4t_A           97 DVPIKAGDVCFTDSGESHSIENTGNTDLEFLAV  129 (133)
T ss_dssp             EEEEETTEEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             EEEeCCCcEEEECCCCcEEeEECCCCCEEEEEE
Confidence            999999999999999999999999887765543

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.24  E-value=3e-11  Score=109.31  Aligned_cols=85  Identities=12%  Similarity=-0.007  Sum_probs=69.9

Q ss_pred             cCCceEEEeeeCCCe-EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEE-ECCCCeEEEEEcCC
Q 021654          201 IPGGSMKIIRESPTS-AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLF-TPAGDVHRVKYYEE  278 (309)
Q Consensus       201 ~pgg~~~il~~~~~~-~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~-IP~g~~H~~~n~gd  278 (309)
                      .+|...+++...... .+++++||...++|+|+..|++||++|+++++  ++++++.|+|||++| +|+|++|+++|.++
T Consensus        21 ~~Gv~~~~l~~~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~--~~~~~~~l~~Gd~i~~ip~~~~H~~~n~~~   98 (243)
T 3h7j_A           21 ENGVRQYSTVRGDTEVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMMT--VGDVTRKMTALESAYIAPPHVPHGARNDTD   98 (243)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECTTEEEEEECCSSEEEEEEEESEEEEE--ETTEEEEEETTTCEEEECTTCCEEEEECSS
T ss_pred             CCCeEEEEEECCCCEEEEEEECCCCccCCEECCCcEEEEEEEeEEEEE--ECCEEEEECCCCEEEEcCCCCcEeeEeCCC
Confidence            345555555443332 56679999999999999999999999999995  469999999999997 99999999999999


Q ss_pred             ceEEEEEcC
Q 021654          279 TEFFIKWDG  287 (309)
Q Consensus       279 ~~~~i~~~~  287 (309)
                      .+++++++-
T Consensus        99 ~~~~~l~i~  107 (243)
T 3h7j_A           99 QEVIAIDIK  107 (243)
T ss_dssp             SCEEEEEEE
T ss_pred             CcEEEEEEe
Confidence            888766653

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=99.23  E-value=1.3e-10  Score=90.83  Aligned_cols=67  Identities=25%  Similarity=0.414  Sum_probs=58.7

Q ss_pred             EEEEEcCCCcCCCeecCC-ceE-EEEEecEEEEEEeeC-CeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTF-GHD-LVVLQGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~-~e~-vyVlsG~l~v~i~~~-~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..+++.||...++|+|+. .|. +||++|++++.  .+ ++.+.|++||++++|+|++|+++|.++..+++.
T Consensus        36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~~--~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~~  105 (110)
T 2q30_A           36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFV--GDGDAVIPAPRGAVLVAPISTPHGVRAVTDMKVLVT  105 (110)
T ss_dssp             EEEEECTTCEEEEECCSSSCEEEEEEEESCEEEE--CGGGCEEEECTTEEEEEETTSCEEEEESSSEEEEEE
T ss_pred             EEEEECCCCcCCcccCCCCccEEEEEEeCEEEEE--eCCCEEEEECCCCEEEeCCCCcEEEEEcCCcEEEEE
Confidence            567889999999999996 687 79999999995  45 689999999999999999999999988766543

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.22  E-value=5.3e-11  Score=94.48  Aligned_cols=65  Identities=18%  Similarity=0.281  Sum_probs=57.5

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      .++.+.||...+.|+|+..|++||++|+++++  .+++.+.|++||++++|++++|+++|.++..++
T Consensus        41 ~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~~--i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~  105 (114)
T 2ozj_A           41 SLFSFADGESVSEEEYFGDTLYLILQGEAVIT--FDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKML  105 (114)
T ss_dssp             EEEEEETTSSCCCBCCSSCEEEEEEEEEEEEE--ETTEEEEECTTCEEEECTTCCBEEEEEEEEEEE
T ss_pred             EEEEECCCCccccEECCCCeEEEEEeCEEEEE--ECCEEEEecCCCEEEECCCCcEEEEeCCCcEEE
Confidence            45678899999999999999999999999995  469999999999999999999999997654443

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.21  E-value=5e-11  Score=100.78  Aligned_cols=70  Identities=17%  Similarity=0.305  Sum_probs=61.1

Q ss_pred             EEEEEcCCC-cCCCeec-CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCC-CeEEEEEcCCceEEEEEcC
Q 021654          216 AIVRFKAGS-VEPAHHH-TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAG-DVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       216 ~~~~l~pG~-~~p~H~H-~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g-~~H~~~n~gd~~~~i~~~~  287 (309)
                      ..++++||. ..++|+| ...|++||++|+++++  ++++++.|++||++++|++ ++|++.|.+++++.+++..
T Consensus        49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~~--~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~v~  121 (162)
T 3l2h_A           49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTLT--MENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLVIG  121 (162)
T ss_dssp             EEEEECTTCBSSSSBEESSCCEEEEEEESCEEEE--ETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEEEE
T ss_pred             EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEEE--ECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEEEE
Confidence            567899999 5899999 6788899999999995  4699999999999999998 9999999998877655544

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=99.20  E-value=6.8e-11  Score=100.46  Aligned_cols=106  Identities=25%  Similarity=0.326  Sum_probs=87.2

Q ss_pred             EEeecCCCCCeee-----cCCceEEEeeeCCCe----EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eEEE
Q 021654          188 CLVKNRELNPVEM-----IPGGSMKIIRESPTS----AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ERFD  256 (309)
Q Consensus       188 ~v~~~~e~~~~~~-----~pgg~~~il~~~~~~----~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~~~  256 (309)
                      .++...+...+..     .+|-+++.|+.++..    .+++++||..+|.|+|+..++++||+|++..  ..++  ..+.
T Consensus        12 ~~v~~d~~~W~p~P~~l~~~Gv~~k~L~~~~e~g~~t~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~--~~Gd~~~~~~   89 (153)
T 3bal_A           12 EYVKISDNNYVPFPEAFSDGGITWQLLHSSPETSSWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEV--RGGEQEGGST   89 (153)
T ss_dssp             EEEECCGGGCEECCGGGEESCCEEEEEEEETTTTEEEEEEEECTTEEECCEEESSCEEEEEEESEEEE--TTCGGGTSEE
T ss_pred             eEEccccCceecCCCccCCCCeEEEEEEECCccceEEEEEEeCCCCCccCccCCCCEEEEEEEEEEEe--cCccccCccc
Confidence            4667777777766     678889988777653    7899999999999999999999999999998  4333  3488


Q ss_pred             ecCCcEEEECCCCeEE-EEEcCCceEEEEEcCccccccchh
Q 021654          257 LTVGDYLFTPAGDVHR-VKYYEETEFFIKWDGRWDMFFDED  296 (309)
Q Consensus       257 L~pGD~v~IP~g~~H~-~~n~gd~~~~i~~~~~~~i~~~e~  296 (309)
                      +.+|++++.|+|..|. +...+++++++...|.+ .|++++
T Consensus        90 ~~aGsYv~ePpGs~H~p~~~~~~~~~~~~~~Gp~-~y~d~~  129 (153)
T 3bal_A           90 AYAPSYGFESSGALHGKTFFPVESQFYMTFLGPL-NFIDDN  129 (153)
T ss_dssp             EESSEEEEECTTCEESCCEESSCEEEEEEEESCE-EEECTT
T ss_pred             cCCCeEEEcCCCCcccceeCCCCeEEEEEEECCe-EEECCC
Confidence            8999999999999998 45566788888888887 688775

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.19  E-value=5.5e-11  Score=96.61  Aligned_cols=67  Identities=21%  Similarity=0.417  Sum_probs=59.9

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..++++||...++|+|+..|++||++|+++++  .+++++.|++||++++|++++|++.|.+++++.+.
T Consensus        51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~~--i~~~~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~l  117 (126)
T 1vj2_A           51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVL--KEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEFL  117 (126)
T ss_dssp             EEEEEEEEEEEEEECCSSCEEEEEEESEEEEE--CSSCEEEEETTEEEEECTTCCEEEECCSSSCEEEE
T ss_pred             EEEEECCCCcCCceeCCCcEEEEEEEeEEEEE--ECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            56788999999999999999999999999995  56899999999999999999999999987666543

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=99.17  E-value=1.9e-10  Score=98.06  Aligned_cols=108  Identities=17%  Similarity=0.174  Sum_probs=79.8

Q ss_pred             ceeEEeecCCCCCeeecCCceEEEeeeCCCe--EEEEEcCCCcCCCeecCC-ceEEEEEe--cEEEEEEeeCCeEEEecC
Q 021654          185 SICCLVKNRELNPVEMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHTF-GHDLVVLQ--GKKSVWNLTKGERFDLTV  259 (309)
Q Consensus       185 ~~~~v~~~~e~~~~~~~pgg~~~il~~~~~~--~~~~l~pG~~~p~H~H~~-~e~vyVls--G~l~v~i~~~~~~~~L~p  259 (309)
                      ....++.-.+..+...++|.+++++......  .+..+.++...++|+|+. .|++|||+  |++++++  +++.+.|++
T Consensus        15 ~~~~iv~~~ei~~~~~~~G~srR~l~~~~~fp~sv~~v~~g~~~~~H~H~~~~E~~yVLe~~G~g~v~i--dge~~~l~~   92 (157)
T 4h7l_A           15 AMPQMISLSEIEAVACPCGWAQRAFGHDAGTSVSVHYTQITKAARTHYHREHQEIYVVLDHAAHATIEL--NGQSYPLTK   92 (157)
T ss_dssp             TSCEEEETTTSCCEEETTEEEEEESCGGGCCSCEEEEEEECSCCCCBBCSSCEEEEEEEEECTTCEEEE--TTEEEECCT
T ss_pred             cCceEEEhhhCCCccCCCCeeeEEeEcCCCCcEEEEEEeCCCCccceECCCCcEEEEEEecCcEEEEEE--CCEEEEeCC
Confidence            4457888888888888888888877655432  344456677789999975 56799999  9999954  699999999


Q ss_pred             CcEEEECCCCeEEEEEcCCceEEEEEcCcc---ccccchh
Q 021654          260 GDYLFTPAGDVHRVKYYEETEFFIKWDGRW---DMFFDED  296 (309)
Q Consensus       260 GD~v~IP~g~~H~~~n~gd~~~~i~~~~~~---~i~~~e~  296 (309)
                      ||+++||+|++|++.  ++..++......+   +-|++|+
T Consensus        93 GD~v~IPpg~~H~i~--g~l~~L~I~~Pp~~~eD~~f~e~  130 (157)
T 4h7l_A           93 LLAISIPPLVRHRIV--GEATIINIVSPPFDPADEWFDSS  130 (157)
T ss_dssp             TEEEEECTTCCEEEE--SCEEEEEEEESSCCTTCCBC---
T ss_pred             CCEEEECCCCeEeeE--CCEEEEEEECCCCCCCcceEccc
Confidence            999999999999997  4555555555543   3555553

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.17  E-value=1.2e-10  Score=97.37  Aligned_cols=68  Identities=16%  Similarity=0.104  Sum_probs=58.6

Q ss_pred             EEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeCCeE------EEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTKGER------FDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~~~~------~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      ..+++.||...++|+|+.. |++||++|++++++.  ++.      +.|++||++++|+|++|+++|.++.++.+++
T Consensus        46 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~i~--~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~~~l~  120 (148)
T 2oa2_A           46 TLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLVQMG--HRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPLKLYS  120 (148)
T ss_dssp             EEEEECTTCBCCCBCCTTCEEEEEEEESEEEEEEE--SBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCEEEEE
T ss_pred             EEEEECCCCccCceECCCCcEEEEEEeCEEEEEEC--CccccceeeEEECCCCEEEECCCCcEEEEECCCCCEEEEE
Confidence            5678999999999999865 779999999999654  666      9999999999999999999999877664433

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.17  E-value=5.1e-11  Score=103.18  Aligned_cols=69  Identities=17%  Similarity=0.195  Sum_probs=61.2

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      .+++++||...++|.|...|++|||+|++++++. +++++.|++||++ +|++++|+++|.+++++.++|.
T Consensus        82 ~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l~ld-~ge~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V  150 (172)
T 3es1_A           82 RVVDMLPGKESPMHRTNSIDYGIVLEGEIELELD-DGAKRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFI  150 (172)
T ss_dssp             EEEEECTTCBCCCBCCSEEEEEEEEESCEEEECG-GGCEEEECTTCEE-EECSCCBEEECCSSSCEEEEEE
T ss_pred             EEEEECCCCCCCCeecCceEEEEEEeCEEEEEEC-CCeEEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEE
Confidence            5678999999999999999999999999999642 2689999999999 9999999999999888776664

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.15  E-value=1.5e-10  Score=98.79  Aligned_cols=70  Identities=20%  Similarity=0.235  Sum_probs=61.1

Q ss_pred             EEEEEcCCCcC-CCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCC--CeEEEEEcCCceEEEEEcC
Q 021654          216 AIVRFKAGSVE-PAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       216 ~~~~l~pG~~~-p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g--~~H~~~n~gd~~~~i~~~~  287 (309)
                      .+++++||... ++|+|+. .|++||++|+++++  ++++++.|++||++++|++  ++|+++|.++.++.+++..
T Consensus        46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~~--~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~l~v~  119 (163)
T 3i7d_A           46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVLV--DDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATFLVVG  119 (163)
T ss_dssp             EEEEECTTCBSSSSEEESSCCEEEEEEESCEEEE--ETTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEEEEEE
T ss_pred             EEEEECCCCcCCCCccCCCCcEEEEEEECEEEEE--ECCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEEEEEE
Confidence            67899999966 8999998 58899999999995  4699999999999999999  9999999998777655543

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=99.15  E-value=1.1e-10  Score=99.74  Aligned_cols=102  Identities=17%  Similarity=0.196  Sum_probs=79.4

Q ss_pred             eecCCCCCee---ecCCceEEEeeeCCC----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcE
Q 021654          190 VKNRELNPVE---MIPGGSMKIIRESPT----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDY  262 (309)
Q Consensus       190 ~~~~e~~~~~---~~pgg~~~il~~~~~----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~  262 (309)
                      +...+..+..   ..+|-+++.+..++.    ..+++++||...|.|.|+..|++|||+|++++  .  +..+.+++||+
T Consensus        12 v~~~~~~W~~~~~~~~Gv~~~~L~~d~~~g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~--~--e~~~~~~~Gd~   87 (159)
T 3ebr_A           12 LDGNDTPWMPFAPYSNDVMVKYFKIDPVRGETITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRY--K--EHDWVAHAGSV   87 (159)
T ss_dssp             CCGGGSCCEECTTTCSSSEEEEEEEETTTTEEEEEEEECSSCBCCCEEESSCEEEEEEESCEEE--T--TSSCCBCTTCE
T ss_pred             EcCCcCCcEeCCCCCCCEEEEEeeEcCCCCeEEEEEEECCCCCcccccCCCCEEEEEEEeEEEE--e--CCCeEECCCeE
Confidence            3444555555   456777777754422    37899999999999999999999999999997  3  22358999999


Q ss_pred             EEECCCCeEEEEEc----CCceEEEEEcCccccccchh
Q 021654          263 LFTPAGDVHRVKYY----EETEFFIKWDGRWDMFFDED  296 (309)
Q Consensus       263 v~IP~g~~H~~~n~----gd~~~~i~~~~~~~i~~~e~  296 (309)
                      ++.|+|..|+..+.    +++.+++.++|++. |++++
T Consensus        88 ~~~P~g~~H~~~~~~~~~e~~~~~~~~~G~l~-~~~~~  124 (159)
T 3ebr_A           88 VYETASTRHTPQSAYAEGPDIITFNIVAGELL-YLDDK  124 (159)
T ss_dssp             EEECSSEEECEEESSSSSSCEEEEEEEESCEE-EECTT
T ss_pred             EEECCCCcceeEeCCCCCCCEEEEEEecCccE-ecCCC
Confidence            99999999999998    45667788899984 66554

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.14  E-value=2.3e-10  Score=92.36  Aligned_cols=65  Identities=23%  Similarity=0.415  Sum_probs=57.1

Q ss_pred             EEEEEcCCCcCC-CeecCCceEEE-EEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          216 AIVRFKAGSVEP-AHHHTFGHDLV-VLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p-~H~H~~~e~vy-VlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      .++++.||...+ +|+|+..+++| |++|+++++  ++++.+.|++||++++|++++|+++|.++.++.
T Consensus        29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~~--i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~   95 (125)
T 3cew_A           29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFIT--IDGEKIELQAGDWLRIAPDGKRQISAASDSPIG   95 (125)
T ss_dssp             EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEEE--ETTEEEEEETTEEEEECTTCCEEEEEBTTBCEE
T ss_pred             EEEEECCCCCCCCCccCCCceEEEEEEeCEEEEE--ECCEEEEeCCCCEEEECCCCcEEEEcCCCCCEE
Confidence            567889999988 89999988765 999999995  469999999999999999999999999876554

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.14  E-value=8.5e-11  Score=106.28  Aligned_cols=67  Identities=16%  Similarity=0.200  Sum_probs=59.7

Q ss_pred             EEEEEcC-CCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKA-GSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~p-G~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      .+++++| |...++|+|+..|++||++|+++++  ++++++.|++||++|+|++++|+++|.++.++.++
T Consensus       148 ~~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~~--i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l  215 (243)
T 3h7j_A          148 MLAKIPGNGGEMPFHKHRNEQIGICIGGGYDMT--VEGCTVEMKFGTAYFCEPREDHGAINRSEKESKSI  215 (243)
T ss_dssp             EEEEECTTTEEEEEECCSSEEEEEECSSCEEEE--ETTEEEEECTTCEEEECTTCCEEEEECSSSCEEEE
T ss_pred             EEEEECCCCCcCCCEeCCCcEEEEEEECEEEEE--ECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            4668999 8889999999999999999999995  56999999999999999999999999987665443

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.14  E-value=3.4e-10  Score=101.39  Aligned_cols=73  Identities=10%  Similarity=0.101  Sum_probs=64.4

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcCccc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWD  290 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~~~  290 (309)
                      .++.+.||...+.|.|+..+++||++|++++++  +++++.|++||++++|+|++|++++.++..++..+....+
T Consensus        40 ~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~~i--~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i~~~~~~  112 (227)
T 3rns_A           40 SLFSLAKDEEITAEAMLGNRYYYCFNGNGEIFI--ENNKKTISNGDFLEITANHNYSIEARDNLKLIEIGEKIGD  112 (227)
T ss_dssp             EEEEECTTCEEEECSCSSCEEEEEEESEEEEEE--SSCEEEEETTEEEEECSSCCEEEEESSSEEEEEEEECC--
T ss_pred             EEEEECCCCccCccccCCCEEEEEEeCEEEEEE--CCEEEEECCCCEEEECCCCCEEEEECCCcEEEEEEeeccc
Confidence            678999999999999999999999999999954  6999999999999999999999999988777756566553

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=99.13  E-value=4.9e-11  Score=93.65  Aligned_cols=79  Identities=18%  Similarity=0.171  Sum_probs=60.8

Q ss_pred             EEEeeeCCCe--EEEEEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCC-eEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          206 MKIIRESPTS--AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKG-ERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       206 ~~il~~~~~~--~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~-~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      .+++.++...  ..++++||...++|+|+...+ ++|++|+++++...+. +...+++||++|+|+|+.|++.|.++.++
T Consensus         8 ~~V~ien~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~pl   87 (98)
T 3lag_A            8 SEIQIDNDEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYARKAGVQHDVRNESTAEI   87 (98)
T ss_dssp             EEEEEESSSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEECTTCEEEEBCCSSSCE
T ss_pred             eeEEEcCCeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEEcCCCcEECEECCCCeE
Confidence            3444444443  568999999999999998766 6678999999643111 34678999999999999999999999998


Q ss_pred             EEE
Q 021654          282 FIK  284 (309)
Q Consensus       282 ~i~  284 (309)
                      .++
T Consensus        88 ~~I   90 (98)
T 3lag_A           88 VFL   90 (98)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=99.13  E-value=2.2e-10  Score=98.65  Aligned_cols=69  Identities=16%  Similarity=0.080  Sum_probs=60.0

Q ss_pred             EEEEEcC-CCcCCC-eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKA-GSVEPA-HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~p-G~~~p~-H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      .+++++| |+..+. |.|...+++|||+|++++++  +++++.|.+||++++|++.+|+++|.++.++.++|.
T Consensus        91 ~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~vtl--~g~~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A           91 GILKLPAISGQKKLSNSFRTYITFHVIQGIVEVTV--CKNKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             EEEEECSSGGGCEEEECCSEEEEEEEEESEEEEEE--TTEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             EEEEECCCCCCCCCccCCCceEEEEEEEeEEEEEE--CCEEEEEcCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            5789999 765544 56777777999999999954  699999999999999999999999999999888876

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.13  E-value=2.2e-10  Score=95.97  Aligned_cols=67  Identities=27%  Similarity=0.250  Sum_probs=59.8

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeE-EEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER-FDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~-~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..+++.||...++|+|+..|++||++|+++++  ++++. +.|++||++++|++++|++.|.++.++.++
T Consensus        51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~~--~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~l  118 (147)
T 2f4p_A           51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQ--ERGKPARILKKGDVVEIPPNVVHWHGAAPDEELVHI  118 (147)
T ss_dssp             EEEEECTTCEECSEECTTCEEEEEEEEEEEEE--ETTSCCEEEETTCEEEECTTCCEEEEEBTTBCEEEE
T ss_pred             EEEEECCCCccCceECCCceEEEEEeCEEEEE--ECCEEEEEECCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            56789999999999999999999999999995  45787 999999999999999999999988766443

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.12  E-value=1.9e-10  Score=93.83  Aligned_cols=58  Identities=22%  Similarity=0.170  Sum_probs=48.0

Q ss_pred             cCCCcCCCeecCC-ceEEEEEecEEEEEEeeCC-eEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          221 KAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKG-ERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       221 ~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~-~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      +||...++|+|+. .|++||++|++++++  ++ +.+.|++||++++|+|++|++.|.++..
T Consensus        51 ~~g~~~~~H~H~~~~E~~~vl~G~~~~~~--~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~  110 (134)
T 2o8q_A           51 GKEAKPTWHTHTVGFQLFYVLRGWVEFEY--EDIGAVMLEAGGSAFQPPGVRHRELRHSDDL  110 (134)
T ss_dssp             -----CCCEEECCSCEEEEEEESEEEEEE--TTTEEEEEETTCEEECCTTCCEEEEEECTTC
T ss_pred             CCCCCCCCEECCCCcEEEEEEeCEEEEEE--CCcEEEEecCCCEEEECCCCcEEeEeCCCCe
Confidence            4788889999998 889999999999964  57 9999999999999999999999976543

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.11  E-value=2.4e-10  Score=99.08  Aligned_cols=67  Identities=13%  Similarity=0.082  Sum_probs=58.9

Q ss_pred             EEEEEcCCCcCC--CeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          216 AIVRFKAGSVEP--AHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~p--~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      ..++++||...+  +|+|+..|++||++|+++++  ++++.+.|.+||++++|++++|+++|.++.++ ++|
T Consensus       107 ~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~--~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~-~l~  175 (192)
T 1y9q_A          107 FEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVF--FDEQWHELQQGEHIRFFSDQPHGYAAVTEKAV-FQN  175 (192)
T ss_dssp             EEEEECTTCEEEECCCSTTCEEEEEEEESCEEEE--ETTEEEEECTTCEEEEECSSSEEEEESSSCEE-EEE
T ss_pred             EEEEECCCCCccCCCCCCCCEEEEEEEEeEEEEE--ECCEEEEeCCCCEEEEcCCCCeEeECCCCCcE-EEE
Confidence            567899998765  78888889999999999995  46999999999999999999999999998777 554

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.10  E-value=4.7e-10  Score=100.47  Aligned_cols=67  Identities=22%  Similarity=0.310  Sum_probs=60.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEE-cCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY-YEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n-~gd~~~~i~  284 (309)
                      .+++++||...++|+|+..+.+||++|+++++  .+++++.|++||++|+|++++|+++| .++..++++
T Consensus       156 ~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~~--i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~ll~  223 (227)
T 3rns_A          156 TIMSFWKGESLDPHKAPGDALVTVLDGEGKYY--VDGKPFIVKKGESAVLPANIPHAVEAETENFKMLLI  223 (227)
T ss_dssp             EEEEECTTCEEEEECCSSEEEEEEEEEEEEEE--ETTEEEEEETTEEEEECTTSCEEEECCSSCEEEEEE
T ss_pred             EEEEECCCCccCCEECCCcEEEEEEeEEEEEE--ECCEEEEECCCCEEEECCCCcEEEEeCCCCEEEEEE
Confidence            67899999999999999999999999999995  46999999999999999999999999 777776644

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.09  E-value=4.8e-10  Score=101.73  Aligned_cols=68  Identities=18%  Similarity=0.197  Sum_probs=61.3

Q ss_pred             EEEEEcCCCcCCC-eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          216 AIVRFKAGSVEPA-HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~p~-H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      .+++++||+..+. |+|..+|.+|||+|+++++  .+++++.|++||++|++++.+|+++|.+++++.+++
T Consensus       168 ~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~~--~~~~~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl~  236 (246)
T 1sfn_A          168 STMSFAPGASLPYAEVHYMEHGLLMLEGEGLYK--LEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYLL  236 (246)
T ss_dssp             EEEEECTTCBCSSCBCCSSCEEEEEEECEEEEE--ETTEEEEEETTCEEEECTTCCEEEEEESSSCEEEEE
T ss_pred             EEEEECCCCccCcccCCCceEEEEEEECEEEEE--ECCEEEEcCCCCEEEECCCCCEEEEcCCCCCEEEEE
Confidence            6789999999986 6788888899999999995  569999999999999999999999999998886554

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.08  E-value=1.3e-09  Score=100.32  Aligned_cols=93  Identities=15%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             EEeecCCCCCeeec--CCceEEEeeeCC---C--eEEEEEcCCCcCCC-eecCCceEEEEEecEEEEEEeeCCeEEEecC
Q 021654          188 CLVKNRELNPVEMI--PGGSMKIIRESP---T--SAIVRFKAGSVEPA-HHHTFGHDLVVLQGKKSVWNLTKGERFDLTV  259 (309)
Q Consensus       188 ~v~~~~e~~~~~~~--pgg~~~il~~~~---~--~~~~~l~pG~~~p~-H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~p  259 (309)
                      .+.+..+..+..+.  .|...+.+....   .  ..+++++||...+. |+|+..|++||++|+++++  ++++.+.|++
T Consensus       150 ~v~~~~d~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~~--i~~~~~~l~~  227 (274)
T 1sef_A          150 VVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYLISGQGMYN--LDNEWYPVEK  227 (274)
T ss_dssp             EEEEGGGSCCEEGGGCTTEEEEECSCSSTTCSEEEEEEEECTTCBCSSCBCCSCCEEEEEEECEEEEE--ETTEEEEEET
T ss_pred             eeCChHHCCccccCCCCCeEEEEeCCcccCCCEEEEEEEECCCCccCcceeccCeEEEEEEeCEEEEE--ECCEEEEECC
Confidence            34555555554432  344455543321   1  25678999999998 9999999999999999995  4699999999


Q ss_pred             CcEEEECCCCeEEEEEcCC-ceEE
Q 021654          260 GDYLFTPAGDVHRVKYYEE-TEFF  282 (309)
Q Consensus       260 GD~v~IP~g~~H~~~n~gd-~~~~  282 (309)
                      ||++++|++++|+++|.++ .++.
T Consensus       228 GD~i~i~~~~~H~~~n~~~~~~~~  251 (274)
T 1sef_A          228 GDYIFMSAYVPQAAYAVGREEPLM  251 (274)
T ss_dssp             TCEEEECTTCCEEEEEECSSSCEE
T ss_pred             CCEEEECCCCCEEEEeCCCCCCEE
Confidence            9999999999999999988 6654

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.07  E-value=5e-10  Score=96.97  Aligned_cols=71  Identities=17%  Similarity=0.130  Sum_probs=59.2

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee--CCeEEEecCCcEEEECCCCeEEEEEcCCc-eEEEEEc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT--KGERFDLTVGDYLFTPAGDVHRVKYYEET-EFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~--~~~~~~L~pGD~v~IP~g~~H~~~n~gd~-~~~i~~~  286 (309)
                      ..++++||+..++|+|...|++||++|++++.+..  +++++.|++||++++|+|.+|++.|.++. ++.+.+.
T Consensus        44 ~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~v  117 (178)
T 1dgw_A           44 LEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKF  117 (178)
T ss_dssp             EEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEEE
T ss_pred             EEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEEE
Confidence            56789999999999455678899999999996531  25789999999999999999999999875 6655554

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.07  E-value=5.7e-10  Score=98.20  Aligned_cols=69  Identities=23%  Similarity=0.273  Sum_probs=59.3

Q ss_pred             EEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeC----Ce--EEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTK----GE--RFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~----~~--~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..+++.||...++|+|+. .|++||++|++++++..+    ++  ++.|++||++++|+|.+|+++|.+++++.++
T Consensus        75 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~~l  150 (201)
T 1fi2_A           75 NRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMV  150 (201)
T ss_dssp             EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEEEE
T ss_pred             EEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEEEE
Confidence            567899999999999996 588999999999976422    45  8999999999999999999999987666543

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=99.05  E-value=7e-10  Score=95.38  Aligned_cols=104  Identities=21%  Similarity=0.254  Sum_probs=77.6

Q ss_pred             EeecCCCCCeeec---CCceEEEeeeCCC----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCc
Q 021654          189 LVKNRELNPVEMI---PGGSMKIIRESPT----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGD  261 (309)
Q Consensus       189 v~~~~e~~~~~~~---pgg~~~il~~~~~----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD  261 (309)
                      .+...+..+....   +|-+++.+..++.    ..+++++||...|.|+|+..|++|||+|++..  . ++..+.+++||
T Consensus        12 ~v~~~~~~W~~~~~~~~GV~~~~L~~~~~~g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~--~-~~~~~~~~aGd   88 (165)
T 3cjx_A           12 TVDTTAHPFLKALGGHEGTDIFPLFMDPYNGLMVMRASFAPGLTLPLHFHTGTVHMYTISGCWYY--T-EYPGQKQTAGC   88 (165)
T ss_dssp             EEETTSSCCBCSGGGCTTEEEEEEEEETTTTEEEEEEEECTTCBCCEEEESSCEEEEEEESEEEE--T-TCTTSCEETTE
T ss_pred             EEccccCCcEECCCCCCCEEEEEeEeCCCCCcEEEEEEECCCCcCCcccCCCCEEEEEEEEEEEE--C-CCceEEECCCe
Confidence            3455555554443   3666776654433    37899999999999999999999999999998  3 22257889999


Q ss_pred             EEEECCCCeEEEEEcC----CceEEEEEcCccccccchh
Q 021654          262 YLFTPAGDVHRVKYYE----ETEFFIKWDGRWDMFFDED  296 (309)
Q Consensus       262 ~v~IP~g~~H~~~n~g----d~~~~i~~~~~~~i~~~e~  296 (309)
                      +++.|+|..|...+..    ++.+++...|++. |++++
T Consensus        89 ~~~~P~g~~H~~~a~~~~~~gci~l~v~~GpL~-~~~~~  126 (165)
T 3cjx_A           89 YLYEPGGSIHQFNTPRDNEGQTEVIFMLSGCNV-NFTQD  126 (165)
T ss_dssp             EEEECTTCEECEECCTTCSSCEEEEEEEESCEE-EECTT
T ss_pred             EEEeCCCCceeeEeCCCCCCCcEEEEEEeccce-ecCCC
Confidence            9999999999999976    4446666688774 55543

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.05  E-value=6.3e-10  Score=90.38  Aligned_cols=59  Identities=22%  Similarity=0.408  Sum_probs=53.1

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g  277 (309)
                      .+++++||...++|. +.+|++|||+|++++++  +++++.|++||++++|+|++|++.|.+
T Consensus        43 ~~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~~~--~g~~~~l~~GD~v~ip~g~~H~~~~~~  101 (119)
T 3lwc_A           43 GYGRYAPGQSLTETM-AVDDVMIVLEGRLSVST--DGETVTAGPGEIVYMPKGETVTIRSHE  101 (119)
T ss_dssp             EEEEECTTCEEEEEC-SSEEEEEEEEEEEEEEE--TTEEEEECTTCEEEECTTCEEEEEEEE
T ss_pred             EEEEECCCCCcCccC-CCCEEEEEEeCEEEEEE--CCEEEEECCCCEEEECCCCEEEEEcCC
Confidence            678999999888775 77788999999999964  699999999999999999999999975

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.04  E-value=2.9e-10  Score=89.31  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             EEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCC-eEEEecCCcEEEECCCCeEEEEEcCC
Q 021654          217 IVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKG-ERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       217 ~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~-~~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      .+.+.||. .++|+|+. .|++||++|++++++  ++ +.+.|++||++++|+|++|+++|.++
T Consensus        32 ~~~~~~g~-~~~H~H~~~~E~~~Vl~G~~~~~~--~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~   92 (107)
T 2i45_A           32 HLVKLLGD-YGWHTHGYSDKVLFAVEGDMAVDF--ADGGSMTIREGEMAVVPKSVSHRPRSENG   92 (107)
T ss_dssp             EEEEEEEE-CCCBCC--CCEEEEESSSCEEEEE--TTSCEEEECTTEEEEECTTCCEEEEEEEE
T ss_pred             EEEECCCC-CcceeCCCCCEEEEEEeCEEEEEE--CCCcEEEECCCCEEEECCCCcEeeEeCCC
Confidence            34556665 56999998 888999999999964  57 99999999999999999999999644

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=99.02  E-value=6.5e-10  Score=99.18  Aligned_cols=72  Identities=18%  Similarity=0.210  Sum_probs=63.3

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE--EEEEcCcc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF--FIKWDGRW  289 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~--~i~~~~~~  289 (309)
                      .++.+.||...|+|.|+.+|.+|||+|.+++.+. +++.+.+.|||++++|+|++|++++ +++++  +++|.|..
T Consensus       135 G~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~~v~-~g~~~~l~pGd~v~ipsgv~Ha~rt-~dePllalwvW~G~~  208 (217)
T 4b29_A          135 TVGYWGPGLDYGWHEHLPEELYSVVSGRALFHLR-NAPDLMLEPGQTRFHPANAPHAMTT-LTDPILTLVLWRGAG  208 (217)
T ss_dssp             EEEEECSSCEEEEEECSSEEEEEEEEECEEEEET-TSCCEEECTTCEEEECTTCCEEEEC-CSSCEEEEEEEESTT
T ss_pred             EEEEECCCCcCCCCCCCCceEEEEEeCCEEEEEC-CCCEEecCCCCEEEcCCCCceeEEE-CCccEEEEEEEeCCC
Confidence            6789999999999999999999999999999642 4889999999999999999999995 77887  67777754

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.00  E-value=1.7e-09  Score=99.63  Aligned_cols=66  Identities=15%  Similarity=0.178  Sum_probs=60.4

Q ss_pred             EEEEEcCCCcCCC-eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          216 AIVRFKAGSVEPA-HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~~p~-H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      .++++.||..+|. |+|.+++.+|||+|++.+.  ++++.+.+++||++|++++++|.+.|.+++++.+
T Consensus       189 ~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y~--l~~~~~~V~~GD~i~~~~~~~h~~~n~G~e~~~y  255 (266)
T 4e2q_A          189 HTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYR--LGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSRY  255 (266)
T ss_dssp             EEEEECTTCBCSSCCCCSCCEEEEEEECEEEEE--ETTEEEEEETTCEEEECTTCCEEEEEESSSCEEE
T ss_pred             EEEEECCCcCcCCceEcccceEEEEEeceEEEE--ECCEEEEecCCCEEEECCCCcEEEEeCCCCCEEE
Confidence            6789999999996 7888889999999999995  5699999999999999999999999999888753

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=98.99  E-value=4.9e-10  Score=101.79  Aligned_cols=68  Identities=13%  Similarity=0.148  Sum_probs=57.9

Q ss_pred             EEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEee------CCe------------EEEecCCcEEEECCCCeEEEEEc
Q 021654          216 AIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLT------KGE------------RFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~------~~~------------~~~L~pGD~v~IP~g~~H~~~n~  276 (309)
                      ..++++||...++|+|+ ..|++||++|++++++.+      +++            .+.+.|||++++|+|++|+++|.
T Consensus        46 ~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~N~  125 (239)
T 2xlg_A           46 AHAQIPPGGGPMPHIHYFINEWFWTPEGGIELFHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFVNP  125 (239)
T ss_dssp             EEEEECTTCSCCSEEESSEEEEEEETTCCCEEEEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEECC
T ss_pred             EEEEECCCCcCCCeECCCccEEEEEEEeEEEEEEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEEeC
Confidence            45688999999999999 556699999999997611      566            99999999999999999999999


Q ss_pred             CCceEEE
Q 021654          277 EETEFFI  283 (309)
Q Consensus       277 gd~~~~i  283 (309)
                      ++.++.+
T Consensus       126 ~~~~~~~  132 (239)
T 2xlg_A          126 TDKTLPI  132 (239)
T ss_dssp             SSSCEEE
T ss_pred             CCCCEEE
Confidence            9876543

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.98  E-value=1.7e-09  Score=101.04  Aligned_cols=89  Identities=24%  Similarity=0.323  Sum_probs=70.3

Q ss_pred             EEeecCCCCCeeecCCceEEEeeeC----CC--eEEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCCeEEEecCC
Q 021654          188 CLVKNRELNPVEMIPGGSMKIIRES----PT--SAIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKGERFDLTVG  260 (309)
Q Consensus       188 ~v~~~~e~~~~~~~pgg~~~il~~~----~~--~~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~~~~~L~pG  260 (309)
                      .+++..+...+. ..|...+++...    ..  ...+++.||...++|+|+ ..|++||++|++++++  +++.+.|++|
T Consensus        16 ~v~r~~~~~~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~--~~~~~~l~~G   92 (337)
T 1y3t_A           16 YLLRSGEGERYL-FGRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL--DGERYLLISG   92 (337)
T ss_dssp             EEECTTCSEEEE-ETTEEEEEEECHHHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEEE--TTEEEEECTT
T ss_pred             EEecCCCccEEE-ECCeEEEEEeecCCCCCeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEEEE--CCEEEEECCC
Confidence            466777665443 355555655422    11  156789999999999999 7888999999999964  6999999999


Q ss_pred             cEEEECCCCeEEEEEcCCc
Q 021654          261 DYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       261 D~v~IP~g~~H~~~n~gd~  279 (309)
                      |++++|+|++|+++|.++.
T Consensus        93 d~~~~p~~~~H~~~n~~~~  111 (337)
T 1y3t_A           93 DYANIPAGTPHSYRMQSHR  111 (337)
T ss_dssp             CEEEECTTCCEEEEECSTT
T ss_pred             CEEEECCCCcEEEEECCCC
Confidence            9999999999999999873

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.98  E-value=1.6e-09  Score=94.77  Aligned_cols=69  Identities=20%  Similarity=0.251  Sum_probs=58.1

Q ss_pred             EEEEEcCCCc------CCCeecCC---ceEEEEEecEEEEEEeeCCeE-----EEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          216 AIVRFKAGSV------EPAHHHTF---GHDLVVLQGKKSVWNLTKGER-----FDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~~~l~pG~~------~p~H~H~~---~e~vyVlsG~l~v~i~~~~~~-----~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      .+++++||..      .+.|+|+.   .|.+||++|++++++.  ++.     +.|++||++++|++++|++.|.+++++
T Consensus        70 ~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~~i~--~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~  147 (190)
T 1x82_A           70 ATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQ--TPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPF  147 (190)
T ss_dssp             EEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEE--CTTCCEEEEEECTTCEEEECTTCEEEEEECSSSCE
T ss_pred             EEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEEEEc--CcCCcEEEEEECCCcEEEECCCCeEEEEECCcccE
Confidence            5568999988      78999975   5889999999999765  544     999999999999999999999998776


Q ss_pred             EEEEc
Q 021654          282 FIKWD  286 (309)
Q Consensus       282 ~i~~~  286 (309)
                      .+++.
T Consensus       148 ~~l~v  152 (190)
T 1x82_A          148 IFLAI  152 (190)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            54433

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=98.98  E-value=1.8e-09  Score=83.09  Aligned_cols=56  Identities=20%  Similarity=0.287  Sum_probs=49.3

Q ss_pred             CcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          224 SVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       224 ~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      ...++|+|+. .|++||++|+++++  .+++.+.+++||++++|+|++|++.|.++..+
T Consensus        40 ~~~~~H~H~~~~e~~~v~~G~~~~~--~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~   96 (102)
T 3d82_A           40 GEFVWHEHADTDEVFIVMEGTLQIA--FRDQNITLQAGEMYVIPKGVEHKPMAKEECKI   96 (102)
T ss_dssp             EECCCBCCTTCCEEEEEEESEEEEE--CSSCEEEEETTEEEEECTTCCBEEEEEEEEEE
T ss_pred             CCCCceeCCCCcEEEEEEeCEEEEE--ECCEEEEEcCCCEEEECCCCeEeeEcCCCCEE
Confidence            3578999998 89999999999995  46899999999999999999999999864444

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.97  E-value=8.5e-10  Score=102.04  Aligned_cols=70  Identities=21%  Similarity=0.330  Sum_probs=61.0

Q ss_pred             EEEEEcCCCcC--CCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654          216 AIVRFKAGSVE--PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       216 ~~~~l~pG~~~--p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~  287 (309)
                      .+++++||...  +.|.|...|++||++|++++++  +++++.|++||++++|++++|+++|.++.++.++|..
T Consensus        71 ~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v~v--~g~~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l~v~  142 (278)
T 1sq4_A           71 YIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLTL--QGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIR  142 (278)
T ss_dssp             EEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEEE--SSCEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             EEEEECCCCccCCCCcCCCceEEEEEEeCEEEEEE--CCEEEEECCCCEEEECCCCcEEEEECCCCCEEEEEEE
Confidence            56789999876  6688988888999999999964  5899999999999999999999999998887666654

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.96  E-value=5.9e-09  Score=83.31  Aligned_cols=57  Identities=23%  Similarity=0.367  Sum_probs=48.2

Q ss_pred             cCCCcCCC---eecCCceEEEEEecEEEEEEeeCCeE--EEecCCcEEEECCCCeEEEEEcCCc
Q 021654          221 KAGSVEPA---HHHTFGHDLVVLQGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       221 ~pG~~~p~---H~H~~~e~vyVlsG~l~v~i~~~~~~--~~L~pGD~v~IP~g~~H~~~n~gd~  279 (309)
                      .+|...+.   |.|+..|++||++|++++++  +++.  +.|++||++++|++++|++.|.++.
T Consensus        38 ~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l~~--~~~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~   99 (112)
T 2opk_A           38 SNGQASPPGFWYDSPQDEWVMVVSGSAGIEC--EGDTAPRVMRPGDWLHVPAHCRHRVAWTDGG   99 (112)
T ss_dssp             ESSCCCCTTCCBCCSSEEEEEEEESCEEEEE--TTCSSCEEECTTEEEEECTTCCEEEEEECSS
T ss_pred             eCCccCCCCccccCCccEEEEEEeCeEEEEE--CCEEEEEEECCCCEEEECCCCcEEEEeCCCC
Confidence            45555443   77888899999999999964  5777  9999999999999999999999865

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.95  E-value=2e-09  Score=98.20  Aligned_cols=68  Identities=18%  Similarity=0.215  Sum_probs=57.3

Q ss_pred             EEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC-ceEEEEE
Q 021654          216 AIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE-TEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd-~~~~i~~  285 (309)
                      .+++++||...+.|+|+ ..|++||++|+++++  ++++.+.|++||++++|++++|+++|.++ .++.+++
T Consensus       182 ~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~~--i~~~~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~~l~  251 (261)
T 1rc6_A          182 HILSFAPGASHGYIETHVQEHGAYILSGQGVYN--LDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIY  251 (261)
T ss_dssp             EEEEECTTCCBEEEEEESSCEEEEEEESEEEEE--SSSCEEEEETTCEEEECSSEEEEEEEC----CEEEEE
T ss_pred             EEEEECCCCccCcccCCCceEEEEEEEeEEEEE--ECCEEEEeCCCCEEEECCCCcEEeEeCCCCcCEEEEE
Confidence            67899999999999996 567799999999995  56999999999999999999999999988 7765443

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.95  E-value=1.9e-09  Score=85.19  Aligned_cols=64  Identities=22%  Similarity=0.217  Sum_probs=53.2

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC-CeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~-~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      .+.++.||.. ++| |+..|++||++|+++++  .+ ++.+.|+|||++++|+|++|+++|.++...++
T Consensus        34 ~~~~~~pg~~-~~h-H~~~E~~~Vl~G~~~~~--i~~g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~y   98 (101)
T 1o5u_A           34 PIWEKEVSEF-DWY-YDTNETCYILEGKVEVT--TEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHY   98 (101)
T ss_dssp             CEEEECSEEE-EEE-CSSCEEEEEEEEEEEEE--ETTCCEEEEETTCEEEECTTCEEEEEEEEEEEEEE
T ss_pred             EEEEeCCCcc-ccc-CCceEEEEEEeCEEEEE--ECCCCEEEECCCCEEEECCCCcEEEEeCCCeeEEE
Confidence            3556677653 456 88899999999999995  45 88999999999999999999999988766553

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.94  E-value=1.6e-09  Score=98.76  Aligned_cols=70  Identities=19%  Similarity=0.269  Sum_probs=59.0

Q ss_pred             EEEEEcCCCcCCCeec--CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654          216 AIVRFKAGSVEPAHHH--TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H--~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~  287 (309)
                      .+++++||+..+.|.|  ..+|++||++|+++++  .+++++.|.+||++++|++.+|+++|.++.++.++|..
T Consensus        62 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~--~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~v~  133 (261)
T 1rc6_A           62 YLVTLHQNGGNQQGFGGEGIETFLYVISGNITAK--AEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYK  133 (261)
T ss_dssp             EEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEE--ETTEEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             EEEEEcCCCccCCCCCCCCceEEEEEEEeEEEEE--ECCEEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEE
Confidence            5788999987765543  3456799999999996  46999999999999999999999999998888777665

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=98.93  E-value=4.8e-09  Score=100.44  Aligned_cols=99  Identities=20%  Similarity=0.245  Sum_probs=73.0

Q ss_pred             EeecCCCCCeeecCCceEEEeeeC--C---C--eEEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEee-C--CeEEEe
Q 021654          189 LVKNRELNPVEMIPGGSMKIIRES--P---T--SAIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLT-K--GERFDL  257 (309)
Q Consensus       189 v~~~~e~~~~~~~pgg~~~il~~~--~---~--~~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~-~--~~~~~L  257 (309)
                      +.+..+..+. ..+++..+.+...  +   .  ...++++||...++|+|+. .|++||++|++++++.. +  ++++.|
T Consensus       227 v~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~~i~~~~g~~~~~~l  305 (385)
T 1j58_A          227 TYRLLEQEPI-ESEGGKVYIADSTNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNY  305 (385)
T ss_dssp             EEEGGGSCCE-ECSSEEEEEESTTTSTTCCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEE
T ss_pred             eeecccCCCe-eCCCceEEEeecccCCcccceEEEEEEECCCcccCceeCCCCCEEEEEEeCeEEEEEEcCCCcEEEEEE
Confidence            3444444443 3456665544222  1   1  2678999999999999998 88899999999996531 1  578999


Q ss_pred             cCCcEEEECCCCeEEEEEcCCceEEEEEcCc
Q 021654          258 TVGDYLFTPAGDVHRVKYYEETEFFIKWDGR  288 (309)
Q Consensus       258 ~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~  288 (309)
                      .+||++++|++.+|++.|.++.++.+++...
T Consensus       306 ~~GD~~~ip~~~~H~~~n~~~~~~~~l~v~~  336 (385)
T 1j58_A          306 QAGDVGYVPFAMGHYVENIGDEPLVFLEIFK  336 (385)
T ss_dssp             ESSCEEEECTTCBEEEEECSSSCEEEEEEES
T ss_pred             cCCCEEEECCCCeEEEEECCCCCEEEEEEEC
Confidence            9999999999999999999887765554433

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.93  E-value=5.8e-09  Score=88.42  Aligned_cols=98  Identities=11%  Similarity=0.119  Sum_probs=65.6

Q ss_pred             ceeEEeecCCCCC-----ee-ecCCceEEE--eeeCCC-----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC
Q 021654          185 SICCLVKNRELNP-----VE-MIPGGSMKI--IRESPT-----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK  251 (309)
Q Consensus       185 ~~~~v~~~~e~~~-----~~-~~pgg~~~i--l~~~~~-----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~  251 (309)
                      ++..++|..++..     +. ..|+....+  +...+.     ..++++. +...++| |+.+|..|||+|++++++  +
T Consensus        25 ~gi~~vk~~~v~~~~~er~~~G~p~~~v~i~~l~s~~~~~~~s~g~~~~e-~~~~~~~-~~~eE~~yVLeG~~~l~i--~  100 (151)
T 4axo_A           25 SGITSIKLPTVKVSESDRLDTGNPSDVVYTKDLFTLEESPRLGCGMMEMK-ETTFDWT-LNYDEIDYVIDGTLDIII--D  100 (151)
T ss_dssp             TSCEEECGGGCCCCGGGBCCCSCTTCCEEEEECSCTTTCSSCEEEEEEEE-EEEEEEE-CSSEEEEEEEEEEEEEEE--T
T ss_pred             CCeEEEECCcEEccchhccccCCCCCCEEEEEeecCCCCCcEEEEEEEEc-CccccEe-CCCcEEEEEEEeEEEEEE--C
Confidence            5567777766653     11 234444433  333221     2566776 4444433 456677999999999964  6


Q ss_pred             CeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcCc
Q 021654          252 GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGR  288 (309)
Q Consensus       252 ~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~  288 (309)
                      ++++.|+|||+++||+|++|++.|.+  ++.+.|+..
T Consensus       101 g~~~~l~~GD~i~iP~G~~h~~~n~~--~a~~l~V~~  135 (151)
T 4axo_A          101 GRKVSASSGELIFIPKGSKIQFSVPD--YARFIYVTY  135 (151)
T ss_dssp             TEEEEEETTCEEEECTTCEEEEEEEE--EEEEEEEEE
T ss_pred             CEEEEEcCCCEEEECCCCEEEEEeCC--CEEEEEEEC
Confidence            99999999999999999999999983  444444433

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.90  E-value=2.4e-09  Score=98.65  Aligned_cols=69  Identities=16%  Similarity=0.167  Sum_probs=59.8

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC-CeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcCc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGR  288 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~-~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~  288 (309)
                      .++++.||+..+.|.|..+|++||++|+++++  .+ ++++.|++||++|+|++.+|+++|.  .++.++|+..
T Consensus        73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l~--l~~g~~~~L~~Gds~y~p~~~~H~~~N~--~~Ar~l~V~k  142 (266)
T 4e2q_A           73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTLT--NTSSSSKKLTVDSYAYLPPNFHHSLDCV--ESATLVVFER  142 (266)
T ss_dssp             EEEEECSSEECCCCCTTEEEEEEEEEECEEEE--C--CCCEEECTTEEEEECTTCCCEEEES--SCEEEEEEEE
T ss_pred             EEEEECcCCcCCCCCCCCeEEEEEEEEEEEEE--ECCCcEEEEcCCCEEEECCCCCEEEEeC--CCEEEEEEEe
Confidence            78899999999889999999999999999995  56 8999999999999999999999996  4566666643

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=98.90  E-value=9e-09  Score=97.51  Aligned_cols=71  Identities=21%  Similarity=0.303  Sum_probs=60.8

Q ss_pred             EEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEee-CCe--EEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLT-KGE--RFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~-~~~--~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      ..++++||...++|+|+. .|.+||++|++++++.. +++  ++.|++||++++|++.+|.+.|.+++++.+++.
T Consensus       237 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~~l~~  311 (361)
T 2vqa_A          237 ALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLTVFASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLDIVVV  311 (361)
T ss_dssp             EEEEECTTCEEEEEECSSCCEEEEEEESCEEEEEECSTTCEEEEEECTTCEEEECTTCEEEEECCSSSCEEEEEE
T ss_pred             EEEEECCCcccccccCCCCCEEEEEEeCEEEEEEEcCCCcEEEEEECCCCEEEECCCCeEEeEECCCCCEEEEEE
Confidence            678999999999999998 78899999999997521 465  899999999999999999999998776654444

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=98.90  E-value=6.2e-09  Score=102.40  Aligned_cols=97  Identities=15%  Similarity=0.178  Sum_probs=74.2

Q ss_pred             EeecCCCCCeeecCCceEEEeee------C----C-C-eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eE
Q 021654          189 LVKNRELNPVEMIPGGSMKIIRE------S----P-T-SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ER  254 (309)
Q Consensus       189 v~~~~e~~~~~~~pgg~~~il~~------~----~-~-~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~  254 (309)
                      +.+..++.+.....+|.++++..      .    . . ...++++||+..++|+|...|++||++|++++.+...+  ++
T Consensus        50 vf~~~~~~~~i~~e~G~i~~l~~~~~~~~~l~~~g~~s~~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~  129 (445)
T 2cav_A           50 LFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDT  129 (445)
T ss_dssp             EECGGGEEEEEEETTEEEEEECCTTSSCSTTGGGTTEEEEEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEE
T ss_pred             EEchhhcCceEEcCCEEEEEEeccCcccccccccCcEEEEEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEE
Confidence            45555554333346777777643      1    1 1 15689999999999988888889999999999764333  78


Q ss_pred             EEecCCcEEEECCCCeEEEEEcC-CceEEEEE
Q 021654          255 FDLTVGDYLFTPAGDVHRVKYYE-ETEFFIKW  285 (309)
Q Consensus       255 ~~L~pGD~v~IP~g~~H~~~n~g-d~~~~i~~  285 (309)
                      +.|++||++++|+|++|.+.|.+ ++++.+++
T Consensus       130 ~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l~  161 (445)
T 2cav_A          130 YKLDQGDAIKIQAGTPFYLINPDNNQNLRILK  161 (445)
T ss_dssp             EEEETTEEEEECTTCCEEEEECCSSCCEEEEE
T ss_pred             EEecCCCEEEECCCCcEEEEECCCCCCEEEEE
Confidence            99999999999999999999998 77876653

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.89  E-value=3.8e-09  Score=97.69  Aligned_cols=66  Identities=26%  Similarity=0.356  Sum_probs=58.6

Q ss_pred             EEEEEcCCCcCCC-eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          216 AIVRFKAGSVEPA-HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~~p~-H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      .+++++||...+. |+|...|.+|||+|++.++  .+++++.|++||++|++++.+|++.|.+++++.+
T Consensus       194 ~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~~--~~~~~~~v~~GD~~~~~~~~~h~~~n~g~~~~~y  260 (278)
T 1sq4_A          194 NIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYR--LNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRY  260 (278)
T ss_dssp             EEEEECSSSEESCCCCCSEEEEEEEEECEEEEE--ETTEEEEEETTCEEEEEESCCEEEECCSSSCEEE
T ss_pred             EEEEECCCCCcCCCCCCCccEEEEEEeCEEEEE--ECCEEEEeCCCCEEEECCCCCEEEEcCCCCCEEE
Confidence            6789999999997 5677777799999999995  5699999999999999999999999999887643

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.89  E-value=1.1e-08  Score=95.55  Aligned_cols=98  Identities=17%  Similarity=0.233  Sum_probs=70.0

Q ss_pred             EEeecCCCCCeeecCCceEEEeeeCC---C--eEEEEEcC-CCcCCCeecC-CceEEEEEecEEEEEEeeCCeEEEecCC
Q 021654          188 CLVKNRELNPVEMIPGGSMKIIRESP---T--SAIVRFKA-GSVEPAHHHT-FGHDLVVLQGKKSVWNLTKGERFDLTVG  260 (309)
Q Consensus       188 ~v~~~~e~~~~~~~pgg~~~il~~~~---~--~~~~~l~p-G~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~~~~~L~pG  260 (309)
                      .+++..+..... ..|..++.+....   .  ....++.| |...++|+|+ ..|++||++|++++++  +++++.|.+|
T Consensus       188 ~v~r~~~~~~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~~i--~~~~~~l~~G  264 (337)
T 1y3t_A          188 YVLESGEGDRLL-TGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMWT--DGQEIQLNPG  264 (337)
T ss_dssp             EEECTTCSEEEE-ETTEEEEEEECGGGTTTSCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEEEE--TTEEEEECTT
T ss_pred             EEECCCCcCEEE-ECCcEEEEEecccccCCcEEEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEEEE--CCEEEEECCC
Confidence            345555544333 2455556554211   1  24556656 6778899999 5888999999999964  6899999999


Q ss_pred             cEEEECCCCeEEEEEcCCceEEEEEcCcc
Q 021654          261 DYLFTPAGDVHRVKYYEETEFFIKWDGRW  289 (309)
Q Consensus       261 D~v~IP~g~~H~~~n~gd~~~~i~~~~~~  289 (309)
                      |++++|++.+|++.|.++ ++.++|....
T Consensus       265 D~~~ip~~~~H~~~n~~~-~~~~l~v~~~  292 (337)
T 1y3t_A          265 DFLHVPANTVHSYRLDSH-YTKMVGVLVP  292 (337)
T ss_dssp             CEEEECTTCCEEEEECSS-SEEEEEEEES
T ss_pred             CEEEECCCCeEEEEECCC-CeEEEEEEcC
Confidence            999999999999999987 5555554333

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=98.88  E-value=5.3e-09  Score=99.10  Aligned_cols=86  Identities=19%  Similarity=0.280  Sum_probs=67.2

Q ss_pred             cCCceEEEeeeC--CC-----eEEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEee-CC--eEEEecCCcEEEECCCC
Q 021654          201 IPGGSMKIIRES--PT-----SAIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLT-KG--ERFDLTVGDYLFTPAGD  269 (309)
Q Consensus       201 ~pgg~~~il~~~--~~-----~~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~-~~--~~~~L~pGD~v~IP~g~  269 (309)
                      ..+|..+.+...  |.     ...+++.||...++|||+ ..|++||++|++++++.. ++  +.+.|++||++++|+|+
T Consensus        33 ~~~G~~~~~~~~~~p~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~g~  112 (361)
T 2vqa_A           33 YDGGTTKQVGTYNFPVSKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGW  112 (361)
T ss_dssp             ETTEEEEEESTTTCTTCCSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEECTTC
T ss_pred             cCCceEEEeChhhCccccceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEECCCC
Confidence            356666655322  11     257789999998999999 888899999999997632 23  57999999999999999


Q ss_pred             eEEEEEcCCceEEEEEc
Q 021654          270 VHRVKYYEETEFFIKWD  286 (309)
Q Consensus       270 ~H~~~n~gd~~~~i~~~  286 (309)
                      +|++.|.+++++.+++.
T Consensus       113 ~H~~~n~~~~~~~~l~v  129 (361)
T 2vqa_A          113 GHSIEGIGPDTAKFLLV  129 (361)
T ss_dssp             EEEEEECSSSCEEEEEE
T ss_pred             eEEEEeCCCCCEEEEEE
Confidence            99999998766655444

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.86  E-value=3.5e-09  Score=97.31  Aligned_cols=70  Identities=14%  Similarity=0.138  Sum_probs=58.5

Q ss_pred             EEEEEcCCCcCCCeec--CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654          216 AIVRFKAGSVEPAHHH--TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H--~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~  287 (309)
                      .+++++||.....|.|  ..+|++||++|+++++  .+++++.|.+||++++|++++|+++|.++.++.++|..
T Consensus        65 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~~--~~~~~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~v~  136 (274)
T 1sef_A           65 YIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVS--DGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLYK  136 (274)
T ss_dssp             EEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEE--CSSCEEEEETTEEEEECTTSCCEEEESSSSCEEEEEEE
T ss_pred             EEEEECCCCcCCCCCCCCCceEEEEEEEeEEEEE--ECCEEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEEE
Confidence            5678999887655433  3456799999999995  46999999999999999999999999998888777665

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.82  E-value=1.9e-08  Score=95.83  Aligned_cols=91  Identities=12%  Similarity=0.128  Sum_probs=65.0

Q ss_pred             EEeecCCCCCeeecCCceEEEeeeC----C-CeEEEEEcCCCc-CC--CeecC-CceEEEEEecEEEEEEeeCC-----e
Q 021654          188 CLVKNRELNPVEMIPGGSMKIIRES----P-TSAIVRFKAGSV-EP--AHHHT-FGHDLVVLQGKKSVWNLTKG-----E  253 (309)
Q Consensus       188 ~v~~~~e~~~~~~~pgg~~~il~~~----~-~~~~~~l~pG~~-~p--~H~H~-~~e~vyVlsG~l~v~i~~~~-----~  253 (309)
                      .+++..+...+.......++++...    . ......+.|+.. .+  +|+|+ ..|.+||++|+++++++  +     +
T Consensus        17 ~vvr~~e~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~~v~--~~~g~~~   94 (350)
T 1juh_A           17 YVIRHYSHARAVTVDTQLYRFYVTGPSSGYAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQ--SGNETQQ   94 (350)
T ss_dssp             EEECTTCCTTCEEETTEEEEEEECHHHHTTSCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEE--ETTSCCE
T ss_pred             EEECCCCCceEEecCCceEEEEecCCCCCCcEEEEEEEcCCCCCCCCccccCCCceEEEEEEEEEEEEEEC--CcCCceE
Confidence            4567766665543322334443221    1 123355666654 45  89998 67779999999999765  5     8


Q ss_pred             EEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          254 RFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       254 ~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      .+.|.+||++++|++++|+++|.++..
T Consensus        95 ~~~L~~GD~v~ip~g~~H~~~n~~~~~  121 (350)
T 1juh_A           95 TRVLSSGDYGSVPRNVTHTFQIQDPDT  121 (350)
T ss_dssp             EEEEETTCEEEECTTEEEEEEECSTTE
T ss_pred             EEEECCCCEEEECCCCcEEEEeCCCCC
Confidence            999999999999999999999998765

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.81  E-value=1.3e-08  Score=84.27  Aligned_cols=95  Identities=14%  Similarity=0.205  Sum_probs=63.7

Q ss_pred             ceeEEeecCCCCCee---ecCCce--EEEeeeCC-C---eEEEEEcCCCcCCCeec-CCceEEEEEecEEEEEEeeCCeE
Q 021654          185 SICCLVKNRELNPVE---MIPGGS--MKIIRESP-T---SAIVRFKAGSVEPAHHH-TFGHDLVVLQGKKSVWNLTKGER  254 (309)
Q Consensus       185 ~~~~v~~~~e~~~~~---~~pgg~--~~il~~~~-~---~~~~~l~pG~~~p~H~H-~~~e~vyVlsG~l~v~i~~~~~~  254 (309)
                      +...++|..+..+-.   ..|+..  ...+.... .   ..++++.|| .  .|+| +..|++|||+|++++++  +++.
T Consensus        20 ~g~~vvr~~~~~~e~~~~g~p~~~~~~~~L~~~~~~~~~~~~~~~~pG-~--~~~h~~~~E~~~VLeG~~~l~~--~g~~   94 (133)
T 2pyt_A           20 GGVKVIDGSSVKFGRFDGAEPHCVGLTDLVTEQDGSSMAAGFMQWDNA-F--FPWTLNYDEIDMVLEGELHVRH--EGET   94 (133)
T ss_dssp             TSCEEECGGGCBCEECGGGTTSCCEEEEEECGGGTCSSEEEEEEEEEE-E--EEEECSSEEEEEEEEEEEEEEE--TTEE
T ss_pred             CceEEEeCCccCcccccCCCCCceEEEEEEecCCCCcEEEEEEEECCC-C--ccccCCCCEEEEEEECEEEEEE--CCEE
Confidence            446677776663222   233332  22222211 1   367889999 3  3444 46777999999999954  5999


Q ss_pred             EEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          255 FDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       255 ~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      +.|++||++++|+|.+|++.+.+  ++.++|.
T Consensus        95 ~~l~~GD~i~~p~g~~h~~~~~~--~~~~l~v  124 (133)
T 2pyt_A           95 MIAKAGDVMFIPKGSSIEFGTPT--SVRFLYV  124 (133)
T ss_dssp             EEEETTCEEEECTTCEEEEEEEE--EEEEEEE
T ss_pred             EEECCCcEEEECCCCEEEEEeCC--CEEEEEE
Confidence            99999999999999999999854  4444443

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.80  E-value=6e-09  Score=99.56  Aligned_cols=68  Identities=22%  Similarity=0.339  Sum_probs=60.4

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..+++.||...++|+|+..|++||++|+++++ .++++++.+++||++++|+|++|++.|.+++++.++
T Consensus       103 ~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t-~v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~~l  170 (354)
T 2d40_A          103 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAFT-AVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWL  170 (354)
T ss_dssp             EEEEECTTCEEEEEEESSCEEEEEEECSSCEE-EETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEE
T ss_pred             EEEEECCCCCcCCeecCcceEEEEEEEEEEEE-EECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            67889999999999999999999999999873 246899999999999999999999999988776543

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=98.73  E-value=4.4e-08  Score=96.06  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=72.1

Q ss_pred             EeecCC-CCCeeecCCceEEEeee---C-------C-C-eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC--Ce
Q 021654          189 LVKNRE-LNPVEMIPGGSMKIIRE---S-------P-T-SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK--GE  253 (309)
Q Consensus       189 v~~~~e-~~~~~~~pgg~~~il~~---~-------~-~-~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~--~~  253 (309)
                      +.+... +.+.....+|.++++..   .       . . ...+++.||+..++|+|...|++||++|++++.+...  ..
T Consensus        24 ~f~~~~~~~~~~~se~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~  103 (434)
T 2ea7_A           24 YFNSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRD  103 (434)
T ss_dssp             EECTTTSEEEEEEETTEEEEEECCSTTTCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEE
T ss_pred             EEeccccccceEEcCCEEEEEEeccCCcccccCccccEEEEEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCE
Confidence            334444 44444557788777532   0       1 1 2678999999999997778888999999999965323  46


Q ss_pred             EEEecCCcEEEECCCCeEEEEEcC-CceEEE
Q 021654          254 RFDLTVGDYLFTPAGDVHRVKYYE-ETEFFI  283 (309)
Q Consensus       254 ~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~i  283 (309)
                      ++.|++||++++|+|.+|.+.|.+ ++++.+
T Consensus       104 ~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~~  134 (434)
T 2ea7_A          104 SYILEQGHAQKIPAGTTFFLVNPDDNENLRI  134 (434)
T ss_dssp             EEEEETTEEEEECTTCEEEEEECCSSCCEEE
T ss_pred             EEEeCCCCEEEECCCccEEEEeCCCCCCeEE
Confidence            899999999999999999999998 667543

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.73  E-value=4.4e-08  Score=80.05  Aligned_cols=64  Identities=14%  Similarity=0.240  Sum_probs=52.8

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      .+.+..||... +|.|...|++|||+|++++++. +++.+.|++||++++|+|.+|++.|.++..-
T Consensus        52 g~w~~~pG~~~-~~~~~~~E~~~Vl~G~~~l~~~-~g~~~~l~~GD~~~ip~g~~h~~~~~~~~rK  115 (123)
T 3bcw_A           52 GVWESTSGSFQ-SNTTGYIEYCHIIEGEARLVDP-DGTVHAVKAGDAFIMPEGYTGRWEVDRHVKK  115 (123)
T ss_dssp             EEEEEEEEEEE-CCCTTEEEEEEEEEEEEEEECT-TCCEEEEETTCEEEECTTCCCEEEEEEEEEE
T ss_pred             EEEEECCCcee-eEcCCCcEEEEEEEEEEEEEEC-CCeEEEECCCCEEEECCCCeEEEEECCceeE
Confidence            56778887654 5777657889999999999642 6889999999999999999999999876543

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=98.73  E-value=4.2e-08  Score=95.69  Aligned_cols=91  Identities=15%  Similarity=0.205  Sum_probs=69.8

Q ss_pred             cCCCCCeeecCCceEEEeee----------CC-C-eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee--CCeEEEe
Q 021654          192 NRELNPVEMIPGGSMKIIRE----------SP-T-SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT--KGERFDL  257 (309)
Q Consensus       192 ~~e~~~~~~~pgg~~~il~~----------~~-~-~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~--~~~~~~L  257 (309)
                      ..++.+.....+|.++++..          .. . ...+++.||+..++|+|...|++||++|++++.+..  +++++.|
T Consensus        16 ~~~~~~~~~~e~G~ir~l~~~~~~~~~l~~~~~~s~~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l   95 (416)
T 1uij_A           16 SNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNL   95 (416)
T ss_dssp             GGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEE
T ss_pred             cccccceEEcCCEEEEEEeccCCccccccCcccEEEEEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEe
Confidence            33444444456777776522          01 1 267899999999999888888899999999996532  3578999


Q ss_pred             cCCcEEEECCCCeEEEEEcC-CceEE
Q 021654          258 TVGDYLFTPAGDVHRVKYYE-ETEFF  282 (309)
Q Consensus       258 ~pGD~v~IP~g~~H~~~n~g-d~~~~  282 (309)
                      ++||++++|+|.+|.+.|.+ ++++.
T Consensus        96 ~~GDv~~iP~G~~H~~~N~gg~e~l~  121 (416)
T 1uij_A           96 HPGDAQRIPAGTTYYLVNPHDHQNLK  121 (416)
T ss_dssp             CTTEEEEECTTCEEEEEECCSSCCEE
T ss_pred             cCCCEEEECCCCeEEEEecCCCCCEE
Confidence            99999999999999999994 77764

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.72  E-value=4.8e-08  Score=94.65  Aligned_cols=65  Identities=23%  Similarity=0.255  Sum_probs=59.4

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC-CceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~  282 (309)
                      .+.+++||...+.|.|...+.+||++|++.+.  ++++++.+++||++++|++..|.+.|.+ +++++
T Consensus       297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~~--V~ge~~~~~~GD~~~iP~g~~H~~~N~g~~e~~~  362 (394)
T 3bu7_A          297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSI--VGGKRFDWSEHDIFCVPAWTWHEHCNTQERDDAC  362 (394)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEECCEEEE--ETTEEEEECTTCEEEECTTCCEEEEECCSSCCEE
T ss_pred             EEEEECCCCcCCCcccCCcEEEEEEeCeEEEE--ECCEEEEEeCCCEEEECCCCeEEeEeCCCCCCeE
Confidence            67899999999999999999999999999884  5799999999999999999999999998 56654

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.72  E-value=7.5e-08  Score=87.16  Aligned_cols=65  Identities=25%  Similarity=0.285  Sum_probs=54.5

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      .+++++||+..+.|.  .+|++||++|+++++  .+++++.|.+||++++|++.+|+++|.  .++.++|.
T Consensus        53 ~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~~--~~~~~~~l~~Gd~~~~p~~~~H~~~n~--~~~~~l~v  117 (246)
T 1sfn_A           53 FTAEMPAGAQATESV--YQRFAFVLSGEVDVA--VGGETRTLREYDYVYLPAGEKHMLTAK--TDARVSVF  117 (246)
T ss_dssp             EEEEECTTCEEECCS--SEEEEEEEEEEEEEE--CSSCEEEECTTEEEEECTTCCCEEEEE--EEEEEEEE
T ss_pred             EEEEECCCCcCCCCc--eeEEEEEEECEEEEE--ECCEEEEECCCCEEEECCCCCEEEEeC--CCEEEEEE
Confidence            568999998887774  666799999999995  569999999999999999999999998  44444443

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=98.71  E-value=8.1e-08  Score=95.17  Aligned_cols=84  Identities=17%  Similarity=0.225  Sum_probs=64.0

Q ss_pred             CeeecCCceEEEeeeC--C-------CeEEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeC--CeEEE--ecCCcE
Q 021654          197 PVEMIPGGSMKIIRES--P-------TSAIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTK--GERFD--LTVGDY  262 (309)
Q Consensus       197 ~~~~~pgg~~~il~~~--~-------~~~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~--~~~~~--L~pGD~  262 (309)
                      ++....||.++.+...  |       ....+++.||+..++|||+. .|++||++|++++++...  .+.+.  |.+||+
T Consensus       313 ~~~~~~gG~v~~~~~~~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv  392 (476)
T 1fxz_A          313 DIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRV  392 (476)
T ss_dssp             SEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCE
T ss_pred             CcccCCCeEEEEeccccCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCE
Confidence            3445667777765332  1       12788999999999999995 577999999999987532  24444  999999


Q ss_pred             EEECCCCeEEEEEcCCceE
Q 021654          263 LFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       263 v~IP~g~~H~~~n~gd~~~  281 (309)
                      ++||+|.+|...| ++..+
T Consensus       393 ~viP~G~~H~~~n-g~~~l  410 (476)
T 1fxz_A          393 LIVPQNFVVAARS-QSDNF  410 (476)
T ss_dssp             EEECTTCEEEEEE-CSTTE
T ss_pred             EEECCCCeEEEEe-CCCCE
Confidence            9999999999999 54443

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=98.70  E-value=3.7e-08  Score=94.24  Aligned_cols=79  Identities=27%  Similarity=0.391  Sum_probs=63.0

Q ss_pred             ecCCceEEEeeeC--CC-----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee-CCe--EEEecCCcEEEECCCC
Q 021654          200 MIPGGSMKIIRES--PT-----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KGE--RFDLTVGDYLFTPAGD  269 (309)
Q Consensus       200 ~~pgg~~~il~~~--~~-----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~~--~~~L~pGD~v~IP~g~  269 (309)
                      ...+|..+.+...  +.     ...+++.||...++|||+..|++||++|++++++.. +++  .+.|++||++++|+|+
T Consensus        59 ~~~~G~~~~~~~~~lp~~~~~~~~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip~g~  138 (385)
T 1j58_A           59 LEKGGYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGL  138 (385)
T ss_dssp             EETTEEEEEECTTTCTTCSSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTC
T ss_pred             ccCCcEEEEeccccCcccCceEEEEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEECCCC
Confidence            3456666654321  11     267889999999999999999999999999997642 355  6699999999999999


Q ss_pred             eEEEEEcCC
Q 021654          270 VHRVKYYEE  278 (309)
Q Consensus       270 ~H~~~n~gd  278 (309)
                      +|++.|.++
T Consensus       139 ~H~~~n~~~  147 (385)
T 1j58_A          139 PHSIQALEE  147 (385)
T ss_dssp             CEEEEEEEE
T ss_pred             eEEEEECCC
Confidence            999999874

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=98.70  E-value=1e-07  Score=95.04  Aligned_cols=84  Identities=19%  Similarity=0.188  Sum_probs=64.5

Q ss_pred             CeeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeC--CeEEE--ecCCcE
Q 021654          197 PVEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTK--GERFD--LTVGDY  262 (309)
Q Consensus       197 ~~~~~pgg~~~il~~~--~~-------~~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~--~~~~~--L~pGD~  262 (309)
                      ++....||.++.+...  |.       ...+++.||+..++|||+. .|++||++|++++++...  .+.+.  |.+||+
T Consensus       347 ~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv  426 (510)
T 3c3v_A          347 DIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHV  426 (510)
T ss_dssp             SEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCE
T ss_pred             CcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcE
Confidence            3445667777765332  21       2678999999999999995 577999999999987532  24444  999999


Q ss_pred             EEECCCCeEEEEEcCCceE
Q 021654          263 LFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       263 v~IP~g~~H~~~n~gd~~~  281 (309)
                      ++||+|.+|.+.| ++..+
T Consensus       427 ~viP~G~~H~~~N-g~e~l  444 (510)
T 3c3v_A          427 LVVPQNFAVAGKS-QSDNF  444 (510)
T ss_dssp             EEECTTCEEEEEE-CSSEE
T ss_pred             EEECCCCeEEEEe-CCCCE
Confidence            9999999999999 65544

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.67  E-value=3.5e-08  Score=94.71  Aligned_cols=66  Identities=21%  Similarity=0.300  Sum_probs=60.7

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEE-EEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKS-VWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~-v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      .+..+.||...+.|.|...+..||++|++. +  .++++++.+++||++++|+|..|...|.+++++++
T Consensus       106 ~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~--~vdG~~~~~~~GD~v~iP~g~~H~~~N~gde~l~~  172 (368)
T 3nw4_A          106 AIQYLGPRETAPEHRHSQNAFRFVVEGEGVWT--VVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAW  172 (368)
T ss_dssp             EEEEECTTCEEEEEEESSCEEEECSSCEEEEE--EETTEEEEEETTCEEEECTTCCEEEEECSSSCEEE
T ss_pred             EEEEECCCCccCceecccceEEEEEecceEEE--EECCEEEEEeCCCEEEECCCCcEEeEeCCCCCeEE
Confidence            677999999999999999999999999996 5  45799999999999999999999999999988764

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.67  E-value=1.2e-07  Score=85.07  Aligned_cols=91  Identities=25%  Similarity=0.373  Sum_probs=70.5

Q ss_pred             EeecCCCCCeee-cCCceEEEeeeCC-C----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcE
Q 021654          189 LVKNRELNPVEM-IPGGSMKIIRESP-T----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDY  262 (309)
Q Consensus       189 v~~~~e~~~~~~-~pgg~~~il~~~~-~----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~  262 (309)
                      ++...+..+... .+|-+.+.+..+. .    ..+++++||...|.|.|+..|++|||+|++.-      +...+++||+
T Consensus        13 ~i~~~~~~W~~~~~~Gv~~~~L~~~~~e~g~~~~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~d------~~~~~~~Gd~   86 (223)
T 3o14_A           13 VIDTDQLEWRPSPMKGVERRMLDRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQD------EHGDYPAGTY   86 (223)
T ss_dssp             EEEGGGSCCEECSSTTEEEEEEEEESSSSCEEEEEEEECTTEECCCEECTTCEEEEEEEEEEEE------TTEEEETTEE
T ss_pred             EeeCccCCceeCCCCCEEEEEeecCCCccccEEEEEEECCCCCcccccCCCCEEEEEEEeEEEE------CCeEECCCeE
Confidence            346666666655 4677777774432 2    36899999999999999999999999999764      2348889999


Q ss_pred             EEECCCCeEEEEEcCCceEEEEE
Q 021654          263 LFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       263 v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      ++.|+|..|......++.++++.
T Consensus        87 ~~~P~g~~H~p~a~~gc~~~vk~  109 (223)
T 3o14_A           87 VRNPPTTSHVPGSAEGCTIFVKL  109 (223)
T ss_dssp             EEECTTCEECCEESSCEEEEEEE
T ss_pred             EEeCCCCccccEeCCCCEEEEEe
Confidence            99999999999886666666554

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.65  E-value=8.9e-08  Score=92.76  Aligned_cols=68  Identities=25%  Similarity=0.401  Sum_probs=61.4

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEE-cCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY-YEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n-~gd~~~~i~  284 (309)
                      .+.+++||...+.|.|...+..||++|+..+. .++++++.+++||++++|+|..|...| .++++++++
T Consensus       126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t-~v~G~~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l  194 (394)
T 3bu7_A          126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYT-IVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQ  194 (394)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEECSCEEE-EETTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEE
T ss_pred             EEEEECCCCCcCCccCCcceEEEEEEeeEEEE-EECCEEEEEcCCCEEEECcCCCEEEEcCCCCCCEEEE
Confidence            67899999999999999999999999999763 357999999999999999999999999 998887644

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=98.63  E-value=7.2e-08  Score=95.12  Aligned_cols=69  Identities=16%  Similarity=0.106  Sum_probs=60.1

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC------------------------eEEEecCCcEEEECCCCeE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG------------------------ERFDLTVGDYLFTPAGDVH  271 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~------------------------~~~~L~pGD~v~IP~g~~H  271 (309)
                      ..+++.||+..++|+|+..+++||++|++.+.+...+                        +.+.|++||++++|+|++|
T Consensus        66 ~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~d~~q~~~~l~~GDv~~iPaG~~H  145 (459)
T 2e9q_A           66 IRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFKDQHQKIRPFREGDLLVVPAGVSH  145 (459)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCCEEECCCEEEETTEEEEECTTCCE
T ss_pred             EEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccccccceeEEecCCCEEEECCCCCE
Confidence            5689999999999999999999999999999764232                        2569999999999999999


Q ss_pred             EEEEcCCceEEEE
Q 021654          272 RVKYYEETEFFIK  284 (309)
Q Consensus       272 ~~~n~gd~~~~i~  284 (309)
                      .+.|.+++++.++
T Consensus       146 ~~~N~g~~~l~~l  158 (459)
T 2e9q_A          146 WMYNRGQSDLVLI  158 (459)
T ss_dssp             EEEECSSSCEEEE
T ss_pred             EEEeCCCCCEEEE
Confidence            9999998877654

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=98.61  E-value=1.1e-07  Score=94.29  Aligned_cols=69  Identities=14%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC-------------------------eEEEecCCcEEEECCCCe
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG-------------------------ERFDLTVGDYLFTPAGDV  270 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~-------------------------~~~~L~pGD~v~IP~g~~  270 (309)
                      ..+++.||+..++|+|+..+++||++|++.+.+...+                         +.+.|++||++++|+|++
T Consensus        51 ~r~~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~d~~qk~~~l~~GDvi~iPaG~~  130 (476)
T 1fxz_A           51 SRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVA  130 (476)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEEECTTCE
T ss_pred             EEEEEcCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhccccccccccccccccccceEEEEeCCCEEEECCCCc
Confidence            5789999999999999999999999999999765321                         378999999999999999


Q ss_pred             EEEEEcCCceEEEE
Q 021654          271 HRVKYYEETEFFIK  284 (309)
Q Consensus       271 H~~~n~gd~~~~i~  284 (309)
                      |.+.|.+++++.++
T Consensus       131 h~~~N~G~~~l~~i  144 (476)
T 1fxz_A          131 WWMYNNEDTPVVAV  144 (476)
T ss_dssp             EEEEECSSSCEEEE
T ss_pred             EEEEeCCCCCEEEE
Confidence            99999998877553

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.60  E-value=2.2e-07  Score=79.97  Aligned_cols=63  Identities=21%  Similarity=0.207  Sum_probs=52.6

Q ss_pred             EcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eEEEecCCcEEEECCCCeEEEEEcC-CceEE
Q 021654          220 FKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYE-ETEFF  282 (309)
Q Consensus       220 l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~  282 (309)
                      -.|++...+|.|+.+|++||++|.+.+.+..++  +...|++||.+.+|+|++|+....+ ++..+
T Consensus        42 ~Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvpH~P~r~~~e~~~l  107 (174)
T 1yfu_A           42 GGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPEAGSACL  107 (174)
T ss_dssp             CSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCCTTCEEE
T ss_pred             cCCCcCccCcCCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCCcCccccCCCCEEE
Confidence            346778999999999999999999999876433  5899999999999999999997766 54443

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.59  E-value=1.7e-07  Score=89.47  Aligned_cols=61  Identities=15%  Similarity=0.136  Sum_probs=56.4

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      .+.+++||...++|+|+..+.+||++|++++++  +++++.+.+||.++||++..|++.|.++
T Consensus       271 ~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~~v--~~~~~~~~~GD~~~vP~~~~H~~~n~e~  331 (354)
T 2d40_A          271 FLQLLPKGFASRVARTTDSTIYHVVEGSGQVII--GNETFSFSAKDIFVVPTWHGVSFQTTQD  331 (354)
T ss_dssp             EEEEECTTCBCCCBEESSCEEEEEEEEEEEEEE--TTEEEEEETTCEEEECTTCCEEEEEEEE
T ss_pred             EEEEECCCCCCCceecCCcEEEEEEeCeEEEEE--CCEEEEEcCCCEEEECCCCeEEEEeCCC
Confidence            678999999999999999999999999999965  6899999999999999999999999543

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=98.57  E-value=1.6e-07  Score=93.39  Aligned_cols=69  Identities=13%  Similarity=0.115  Sum_probs=60.8

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC----------------------------CeEEEecCCcEEEECC
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK----------------------------GERFDLTVGDYLFTPA  267 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~----------------------------~~~~~L~pGD~v~IP~  267 (309)
                      ..+++.||+..++|+|+..+++||++|++.+.+...                            .+.+.|.+||+++||+
T Consensus        48 ~r~~i~pggl~~Ph~~~~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~~~~~~~~d~~qkv~~l~~GDvi~iPa  127 (493)
T 2d5f_A           48 SKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPP  127 (493)
T ss_dssp             EEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC-------------CSEEESCEEEEETTEEEEECT
T ss_pred             EEEEeCCCcEeCceecCCCeEEEEEeCEEEEEEEeCCCccccccccccccccccccccccccccceEEEecCCCEEEECC
Confidence            678999999999999999999999999999976421                            1478999999999999


Q ss_pred             CCeEEEEEcCCceEEEE
Q 021654          268 GDVHRVKYYEETEFFIK  284 (309)
Q Consensus       268 g~~H~~~n~gd~~~~i~  284 (309)
                      |++|.+.|.+++++.++
T Consensus       128 G~~h~~~N~g~~~l~~v  144 (493)
T 2d5f_A          128 GVPYWTYNTGDEPVVAI  144 (493)
T ss_dssp             TCCEEEEECSSSCEEEE
T ss_pred             CCcEEEEeCCCCCEEEE
Confidence            99999999998887654

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=98.52  E-value=2.1e-07  Score=91.77  Aligned_cols=84  Identities=14%  Similarity=0.099  Sum_probs=67.5

Q ss_pred             cCCceEEEeeeCCC--------eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--e-----------------
Q 021654          201 IPGGSMKIIRESPT--------SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--E-----------------  253 (309)
Q Consensus       201 ~pgg~~~il~~~~~--------~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~-----------------  253 (309)
                      ..+|.++++.....        ...+++.||+..++|+|...+++||++|++.+.+...+  +                 
T Consensus        30 se~G~~e~~d~~~~~l~~~gvs~~R~~i~P~gl~~Ph~h~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~~~~  109 (465)
T 3qac_A           30 AERGLTEVWDSNEQEFRCAGVSVIRRTIEPHGLLLPSFTSAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERI  109 (465)
T ss_dssp             ETTEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCC---------------
T ss_pred             CCCcEEEEECCCChhhcccceEEEEEEEcCCcCcccEEcCCCEEEEEEECcEEEEEecCCCCceeecchhcccccccccc
Confidence            35667776643321        15789999999999999999999999999999754332  2                 


Q ss_pred             ---------------------EEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          254 ---------------------RFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       254 ---------------------~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                                           ...+++||++++|+|+.|.+.|.+++++.++
T Consensus       110 ~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v  161 (465)
T 3qac_A          110 REQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAV  161 (465)
T ss_dssp             ---------------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEE
T ss_pred             ccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEE
Confidence                                 4589999999999999999999999887654

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.50  E-value=6.2e-07  Score=78.68  Aligned_cols=66  Identities=23%  Similarity=0.235  Sum_probs=52.7

Q ss_pred             EEEEEcCCC----------cCCCeecCCceEEEEEecEEEEEEeeC-Ce--EEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          216 AIVRFKAGS----------VEPAHHHTFGHDLVVLQGKKSVWNLTK-GE--RFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~~~l~pG~----------~~p~H~H~~~e~vyVlsG~l~v~i~~~-~~--~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      -++++.++.          ..++|.|+..|.+||++|++.+.+..+ ++  ...+++||.++||+|++|++.+..+..+
T Consensus        77 D~v~~~p~~~p~~~~k~~~~~~~H~H~~~Ei~yVleG~G~f~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~~~  155 (191)
T 1vr3_A           77 DIITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNYV  155 (191)
T ss_dssp             EEEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCCE
T ss_pred             eEEEECCCcCcchhhhhccCCcceECCcceEEEEEeceEEEEECCCCCeEEEEEECCCCEEEECcCCcCCcccCCCCCE
Confidence            345666664          248999999999999999999977532 33  4599999999999999999998776544

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.49  E-value=4.1e-07  Score=86.52  Aligned_cols=68  Identities=15%  Similarity=0.102  Sum_probs=56.5

Q ss_pred             EEEEcC---CCcCCCeecCCceEEEEEecEEEEEEeeCC-eEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          217 IVRFKA---GSVEPAHHHTFGHDLVVLQGKKSVWNLTKG-ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       217 ~~~l~p---G~~~p~H~H~~~e~vyVlsG~l~v~i~~~~-~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      .+++++   |...+.|.|+..+.+|||+|++++++  ++ +.+.|++||+++||+|.+|++.+.++...++++.
T Consensus       253 ~i~~~~~~~g~~~~~h~~~~~~~~~vleG~~~i~i--~g~~~~~l~~Gd~~~iPag~~h~~~~~~~~~~~l~~~  324 (350)
T 1juh_A          253 TISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQI--GDYAATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVS  324 (350)
T ss_dssp             EEEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEE--TTSCCEEECTTCEEEECTTCCEEEEESSSSEEEEEEE
T ss_pred             EEeeccccCCCCCCcccCCCcEEEEEEeeEEEEEE--CCeEEEEeCCCCEEEECCCCCEEEEecCCeEEEEEEe
Confidence            445555   55789999999999999999999965  47 8999999999999999999999988755544443

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=98.48  E-value=3.1e-07  Score=89.10  Aligned_cols=96  Identities=14%  Similarity=0.123  Sum_probs=74.5

Q ss_pred             EeecCC-CCCeeecCCceEEEe---eeC-------C-C-eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee--CCe
Q 021654          189 LVKNRE-LNPVEMIPGGSMKII---RES-------P-T-SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT--KGE  253 (309)
Q Consensus       189 v~~~~e-~~~~~~~pgg~~~il---~~~-------~-~-~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~--~~~  253 (309)
                      +.+... +.+..-..+|.++.+   ...       . . ...+++.||+..++|||+..+++||++|++++.+..  +..
T Consensus        15 ~f~~~~~~~~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~   94 (397)
T 2phl_A           15 YFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRR   94 (397)
T ss_dssp             EECGGGTEEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEE
T ss_pred             EeccchhccceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcE
Confidence            445555 655555677888875   221       1 1 267899999999999999999999999999997531  346


Q ss_pred             EEEecCCcE------EEECCCCeEEEEEcC-CceEEEE
Q 021654          254 RFDLTVGDY------LFTPAGDVHRVKYYE-ETEFFIK  284 (309)
Q Consensus       254 ~~~L~pGD~------v~IP~g~~H~~~n~g-d~~~~i~  284 (309)
                      ++.|++||.      +++|+|++|.+.|.+ ++++.++
T Consensus        95 ~~~l~~GDv~~~~~~~~iP~G~~h~~~N~g~~~~l~~i  132 (397)
T 2phl_A           95 EYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLRII  132 (397)
T ss_dssp             EEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEEEE
T ss_pred             EEEECCCCcccccceEEECCCCcEEEEeCCCCCCeEEE
Confidence            899999999      999999999999998 6666543

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=98.47  E-value=3.5e-07  Score=91.16  Aligned_cols=69  Identities=12%  Similarity=0.194  Sum_probs=60.4

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--------------------------------------eEEEe
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--------------------------------------ERFDL  257 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--------------------------------------~~~~L  257 (309)
                      ..+++.||+..++|+|+..+++||++|++.+.+...+                                      +.+.|
T Consensus        51 ~r~~i~p~gl~lPh~~~a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~qkv~~v  130 (510)
T 3c3v_A           51 SRLVLRRNALRRPFYSNAPQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRPPRRLQEEDQSQQQQDSHQKVHRF  130 (510)
T ss_dssp             EEEEECTTEEEEEEECSSCEEEEEEECCEEEEEECTTCCCCEEEECCC--------------------CEEEEESCCEEE
T ss_pred             EEEEECCCCCccceecCCCeEEEEEeCEEEEEEEeCCCccccccccccccccccccccccccccccccccccccceEEEe
Confidence            6789999999999999999999999999999765422                                      24789


Q ss_pred             cCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          258 TVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       258 ~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      .+||+++||+|++|++.|.+++++.++
T Consensus       131 ~~GDvi~iPaG~~hw~~N~g~~~l~~v  157 (510)
T 3c3v_A          131 NEGDLIAVPTGVAFWLYNDHDTDVVAV  157 (510)
T ss_dssp             CTTEEEEECTTCEEEEEECSSSCEEEE
T ss_pred             cCCCEEEECCCCCEEEEeCCCCCEEEE
Confidence            999999999999999999998887653

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=98.47  E-value=8e-07  Score=87.67  Aligned_cols=85  Identities=16%  Similarity=0.179  Sum_probs=65.3

Q ss_pred             CCeeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeC--CeEEE--ecCCc
Q 021654          196 NPVEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTK--GERFD--LTVGD  261 (309)
Q Consensus       196 ~~~~~~pgg~~~il~~~--~~-------~~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~--~~~~~--L~pGD  261 (309)
                      .+.....||.++.+...  |.       ...+.+.||+..++|||+.. |++||++|++++.+...  .+.+.  |.+||
T Consensus       296 ~~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GD  375 (459)
T 2e9q_A          296 ADVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQ  375 (459)
T ss_dssp             CSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTC
T ss_pred             CCcccCCCeeEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCc
Confidence            34445667777766432  22       26789999999999999965 67999999999987532  35554  99999


Q ss_pred             EEEECCCCeEEEEEcCCceE
Q 021654          262 YLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       262 ~v~IP~g~~H~~~n~gd~~~  281 (309)
                      +++||+|.+|...| ++..+
T Consensus       376 v~v~P~G~~H~~~n-g~~~~  394 (459)
T 2e9q_A          376 VLMIPQNFVVIKRA-SDRGF  394 (459)
T ss_dssp             EEEECTTCEEEEEE-EEEEE
T ss_pred             EEEECCCCEEEEEe-CCCCe
Confidence            99999999999999 54444

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=98.46  E-value=1.1e-06  Score=87.74  Aligned_cols=89  Identities=10%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             CeeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCC--e--EEEecCCcE
Q 021654          197 PVEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKG--E--RFDLTVGDY  262 (309)
Q Consensus       197 ~~~~~pgg~~~il~~~--~~-------~~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~--~--~~~L~pGD~  262 (309)
                      ++.-..||.++.+...  |.       ...+++.||+..++|||+. .|++||++|++++.+....  .  +..|.+||+
T Consensus       369 d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GDV  448 (531)
T 3fz3_A          369 DIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQL  448 (531)
T ss_dssp             SEEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCE
T ss_pred             CcccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCeE
Confidence            3444557777765332  21       2678999999999999996 6779999999999875332  2  578999999


Q ss_pred             EEECCCCeEEEEEcCCceEEEEE
Q 021654          263 LFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       263 v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      ++||+|.+|...+..+.-.++.|
T Consensus       449 ~v~P~G~~H~~~ag~e~l~flaF  471 (531)
T 3fz3_A          449 FIVPQNHGVIQQAGNQGFEYFAF  471 (531)
T ss_dssp             EEECTTCEEEEEEEEEEEEEEEE
T ss_pred             EEECCCCeEEEecCCCCEEEEEE
Confidence            99999999976644233334445

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.45  E-value=7.7e-07  Score=76.55  Aligned_cols=63  Identities=11%  Similarity=0.048  Sum_probs=52.6

Q ss_pred             cCCCcCCCeecCCceEEEEEecEEEEEEeeCC------eEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG------ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~------~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      .|+....+|+|+.+|++|+++|.+.+.+..++      +...|++||.+.+|+|++|+-....++..++
T Consensus        42 GPn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~e~v~lv  110 (176)
T 1zvf_A           42 GPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVGIV  110 (176)
T ss_dssp             SSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEEEE
T ss_pred             CCCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCcccCCcEEEE
Confidence            35577999999999999999999999876534      4899999999999999999996666555443

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.42  E-value=1.9e-06  Score=74.58  Aligned_cols=60  Identities=22%  Similarity=0.295  Sum_probs=50.8

Q ss_pred             EEEEEcCCCcCCCeecCC------ceE-EEEEecEEEEEEeeCCeE---------------------EEecCCcEEEECC
Q 021654          216 AIVRFKAGSVEPAHHHTF------GHD-LVVLQGKKSVWNLTKGER---------------------FDLTVGDYLFTPA  267 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~------~e~-vyVlsG~l~v~i~~~~~~---------------------~~L~pGD~v~IP~  267 (309)
                      .++.+.||+..|.|.|+.      .++ ++|++|.+++++.  ++.                     ..|+|||++.|||
T Consensus        56 K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~~~--g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvtIpp  133 (175)
T 2y0o_A           56 KELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLYVE--GEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIPP  133 (175)
T ss_dssp             EEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEEES--SSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEEECT
T ss_pred             EEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEEEC--CccccCcceeccCCceeeecCCcEEEECCCCEEEECC
Confidence            567889999999999997      444 7799999999763  433                     5999999999999


Q ss_pred             CCeEEEEEcC
Q 021654          268 GDVHRVKYYE  277 (309)
Q Consensus       268 g~~H~~~n~g  277 (309)
                      |++|++++..
T Consensus       134 g~~H~f~age  143 (175)
T 2y0o_A          134 NTKHWFQAGE  143 (175)
T ss_dssp             TCCEEEEEEE
T ss_pred             CCcEEEEeCC
Confidence            9999999943

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=98.39  E-value=2.2e-06  Score=83.12  Aligned_cols=86  Identities=17%  Similarity=0.120  Sum_probs=65.8

Q ss_pred             CeeecCCceEEEeeeCCC---eEEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeC-------Ce---EEEecCCcE
Q 021654          197 PVEMIPGGSMKIIRESPT---SAIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTK-------GE---RFDLTVGDY  262 (309)
Q Consensus       197 ~~~~~pgg~~~il~~~~~---~~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~-------~~---~~~L~pGD~  262 (309)
                      +....++|+.+.+.....   ...+.+.||+..++|||+.. |++||++|++++.+...       +.   +..|++||.
T Consensus       220 p~~~n~~G~~~~v~~~~l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV  299 (397)
T 2phl_A          220 NTIGNEFGNLTERTDNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDV  299 (397)
T ss_dssp             CEEEETTEEEEEEEETTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCE
T ss_pred             CcccCCCCeEEEEeeccCCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCE
Confidence            344456677665543322   26789999999999999965 55999999999987643       21   578999999


Q ss_pred             EEECCCCeEEEEEcCCceEE
Q 021654          263 LFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       263 v~IP~g~~H~~~n~gd~~~~  282 (309)
                      ++||+|.+|...|.++..++
T Consensus       300 ~vvP~G~~h~~~n~~~l~~l  319 (397)
T 2phl_A          300 FVIPAAYPVAIKATSNVNFT  319 (397)
T ss_dssp             EEECTTCCEEEEESSSEEEE
T ss_pred             EEECCCCeEEEEeCCCeEEE
Confidence            99999999999999855543

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.39  E-value=1.7e-06  Score=71.40  Aligned_cols=49  Identities=20%  Similarity=0.227  Sum_probs=44.8

Q ss_pred             CCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC
Q 021654          227 PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       227 p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g  277 (309)
                      .+|.|+..+++||++|++++.  ++++++.+++||.+++|||++|++.+.+
T Consensus        32 ~p~~h~~~~i~~v~~G~~~~~--i~~~~~~l~~Gd~~~i~p~~~H~~~~~~   80 (164)
T 2arc_A           32 RPLGMKGYILNLTIRGQGVVK--NQGREFVCRPGDILLFPPGEIHHYGRHP   80 (164)
T ss_dssp             ETTCCSSEEEEEEEEECEEEE--ETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred             cccCCCceEEEEEEEeEEEEE--ECCEEEEecCCeEEEEcCCCCEEEEeCC
Confidence            378899999999999999995  4699999999999999999999999875

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=98.36  E-value=2.6e-06  Score=83.07  Aligned_cols=89  Identities=19%  Similarity=0.222  Sum_probs=67.0

Q ss_pred             CCCCeeecCCceEEEeeeCCC---------eEEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeCC-----------
Q 021654          194 ELNPVEMIPGGSMKIIRESPT---------SAIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTKG-----------  252 (309)
Q Consensus       194 e~~~~~~~pgg~~~il~~~~~---------~~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~~-----------  252 (309)
                      +..+....++|+++.+....-         ...+.+.||+..++|||+.. |++||++|++++++...+           
T Consensus       221 ~~~p~~~~~~G~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~  300 (416)
T 1uij_A          221 SRNPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEE  300 (416)
T ss_dssp             SSCCSEECSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC-----------
T ss_pred             ccCCCccCCCceEEEEChHHCccchhcCcceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCcccccccccc
Confidence            444555566777665533221         15789999999999999965 559999999999775332           


Q ss_pred             ----eEE--EecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          253 ----ERF--DLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       253 ----~~~--~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                          +.+  .|.+||.++||+|.+|...|.++..++
T Consensus       301 ~~~~~~~~~~l~~Gdv~vvP~g~~h~~~n~~~~~~l  336 (416)
T 1uij_A          301 PLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFL  336 (416)
T ss_dssp             -CCEEEEEEEEETTCEEEECTTCCEEEEESSSEEEE
T ss_pred             ccceEEEEEEecCCcEEEECCCCeEEEEcCCCeEEE
Confidence                356  899999999999999999999554443

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.34  E-value=2.2e-07  Score=80.82  Aligned_cols=53  Identities=17%  Similarity=0.056  Sum_probs=45.6

Q ss_pred             CCCeecCCceEEEEEecEEEEEEeeCCeE--EEecCCcEEEECCCCeEEEEEcCC
Q 021654          226 EPAHHHTFGHDLVVLQGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       226 ~p~H~H~~~e~vyVlsG~l~v~i~~~~~~--~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      .++|.|+..|..||++|++.+.+..+++.  ..+++||.++||+|++|++.+.++
T Consensus        93 ~~~H~H~~~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~  147 (179)
T 1zrr_A           93 LNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSE  147 (179)
T ss_dssp             HSCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSC
T ss_pred             ccceECChheEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCCCeEeeecCCC
Confidence            57999999999999999999965435665  559999999999999999988665

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=98.34  E-value=4.9e-06  Score=82.64  Aligned_cols=82  Identities=15%  Similarity=0.168  Sum_probs=63.1

Q ss_pred             CCeeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeC--CeEE--EecCCc
Q 021654          196 NPVEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTK--GERF--DLTVGD  261 (309)
Q Consensus       196 ~~~~~~pgg~~~il~~~--~~-------~~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~--~~~~--~L~pGD  261 (309)
                      .++....||.++.+...  |.       ...+.+.||+..++|||+.. |++||++|++++.+...  .+.+  .|.+||
T Consensus       332 ~di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GD  411 (496)
T 3ksc_A          332 PDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGR  411 (496)
T ss_dssp             CSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTC
T ss_pred             CCcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCe
Confidence            34555568887766432  22       26789999999999999865 66999999999987543  2444  499999


Q ss_pred             EEEECCCCeEEEEEcC
Q 021654          262 YLFTPAGDVHRVKYYE  277 (309)
Q Consensus       262 ~v~IP~g~~H~~~n~g  277 (309)
                      +++||.|.+|...|.+
T Consensus       412 V~v~P~G~~H~~~a~~  427 (496)
T 3ksc_A          412 ALTVPQNYAVAAKSLS  427 (496)
T ss_dssp             EEEECTTCEEEEEECS
T ss_pred             EEEECCCCEEEEEeCC
Confidence            9999999999887764

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=98.33  E-value=2.6e-06  Score=83.42  Aligned_cols=88  Identities=16%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             CCCCeeecCCceEEEeeeCCC---------eEEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeCC-----------
Q 021654          194 ELNPVEMIPGGSMKIIRESPT---------SAIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTKG-----------  252 (309)
Q Consensus       194 e~~~~~~~pgg~~~il~~~~~---------~~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~~-----------  252 (309)
                      +-.+.....+|.++.+.....         ...+.+.||+..++|||+.. |++||++|++++++...+           
T Consensus       238 ~~~p~~~~~gG~v~~~~~~~~P~L~~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~  317 (434)
T 2ea7_A          238 NSKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEES  317 (434)
T ss_dssp             SSCCSEEETTEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCC
T ss_pred             cCCCceeCCCcEEEEEChhhCccccccCcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccC
Confidence            444554567777766533211         15789999999999999965 559999999999775332           


Q ss_pred             ---eEE--EecCCcEEEECCCCeEEEEEcCCceE
Q 021654          253 ---ERF--DLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       253 ---~~~--~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                         +.+  .|.+||.++||+|.+|...|.++..+
T Consensus       318 ~~~r~~~~~l~~Gdv~vvP~g~~h~~~n~~~~~~  351 (434)
T 2ea7_A          318 LEVQRYRAELSEDDVFVIPAAYPVAINATSNLNF  351 (434)
T ss_dssp             EEEEEEEEEECTTCEEEECTTCCEEEEESSSEEE
T ss_pred             cceEEEEEEecCCcEEEECCCCeEEEEcCCCeEE
Confidence               156  89999999999999999999955443

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=98.31  E-value=1.3e-06  Score=86.74  Aligned_cols=70  Identities=14%  Similarity=0.147  Sum_probs=60.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--e----------------------EEEecCCcEEEECCCCeE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--E----------------------RFDLTVGDYLFTPAGDVH  271 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~----------------------~~~L~pGD~v~IP~g~~H  271 (309)
                      ..+++.||+..++|+|...+++||++|++.+.+...+  +                      .+.|++||++.||+|++|
T Consensus        49 ~R~~i~pggl~lPh~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~viPaG~~h  128 (496)
T 3ksc_A           49 SRATLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVF  128 (496)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC---------------CCCCCCEEEECTTEEEEECTTCEE
T ss_pred             EEEEecCCCEeCceEcCCCEEEEEEeCceEEEEEeCCCCccchhhhhcccccccccccchheeeccCCCCEEEECCCCcE
Confidence            6789999999999999989999999999999764332  3                      359999999999999999


Q ss_pred             EEEEcCCceEEEEE
Q 021654          272 RVKYYEETEFFIKW  285 (309)
Q Consensus       272 ~~~n~gd~~~~i~~  285 (309)
                      .+.|.++.+++++.
T Consensus       129 ~~~N~G~~~lv~v~  142 (496)
T 3ksc_A          129 WMYNDQDTPVIAVS  142 (496)
T ss_dssp             EEEECSSSCEEEEE
T ss_pred             EEEcCCCCCEEEEE
Confidence            99999998887654

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=98.31  E-value=2.8e-06  Score=83.86  Aligned_cols=83  Identities=16%  Similarity=0.155  Sum_probs=62.5

Q ss_pred             eeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeC--CeEE--EecCCcEE
Q 021654          198 VEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTK--GERF--DLTVGDYL  263 (309)
Q Consensus       198 ~~~~pgg~~~il~~~--~~-------~~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~--~~~~--~L~pGD~v  263 (309)
                      +....||+++.+...  |.       ...+.+.||+..++|||+.. |++||++|++++.+...  .+.+  .|.+||.+
T Consensus       299 ~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~  378 (466)
T 3kgl_A          299 VYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL  378 (466)
T ss_dssp             EEETTTEEEEEECTTTCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             cccCCCceEEEechhhCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEE
Confidence            444557777765432  22       26789999999999999765 67999999999987543  2334  59999999


Q ss_pred             EECCCCeEEEEEcCCceE
Q 021654          264 FTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       264 ~IP~g~~H~~~n~gd~~~  281 (309)
                      +||.|.+|.. +.+++.+
T Consensus       379 v~P~G~~H~~-~ag~e~~  395 (466)
T 3kgl_A          379 SIPQGFSVVK-RATSEQF  395 (466)
T ss_dssp             EECTTCEEEE-EECSSEE
T ss_pred             EECCCCeEEE-EcCCCCE
Confidence            9999999987 5565544

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.24  E-value=5.7e-06  Score=79.35  Aligned_cols=65  Identities=20%  Similarity=0.304  Sum_probs=58.9

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      ....+.||...+.|.|...+.++|++|++++.  ++++++.+.+||.+++|++.+|+..|.++..++
T Consensus       282 ~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~~--I~~~~~~w~~gD~fvvP~w~~h~~~n~~~a~Lf  346 (368)
T 3nw4_A          282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVV--MNGETTKLEKGDMFVVPSWVPWSLQAETQFDLF  346 (368)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEESCEEEE--ETTEEEEECTTCEEEECTTCCEEEEESSSEEEE
T ss_pred             heEEECCCCccCCeeccccEEEEEEeCcEEEE--ECCEEEEecCCCEEEECCCCcEEEEeCCCEEEE
Confidence            56789999999999999999999999999995  469999999999999999999999998665554

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=98.18  E-value=3.9e-06  Score=82.79  Aligned_cols=70  Identities=11%  Similarity=0.049  Sum_probs=59.5

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC-------------------------------------------
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG-------------------------------------------  252 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~-------------------------------------------  252 (309)
                      ..+++.|++..++|+|+..+.+||++|++.+.+...+                                           
T Consensus        46 ~r~~i~p~Gl~lPh~~~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (466)
T 3kgl_A           46 VRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQG  125 (466)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC----------------------------
T ss_pred             EEEEECCCCEeCCeeCCCCeEEEEEeCeEEEEEecCCCcchhhccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999999999999999999998654220                                           


Q ss_pred             -------------------eEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          253 -------------------ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       253 -------------------~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                                         +.+.|++||.++||+|++|.+.|.+++++.++.
T Consensus       126 ~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~l~  177 (466)
T 3kgl_A          126 QQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVS  177 (466)
T ss_dssp             -------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEEEE
T ss_pred             cccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEEEE
Confidence                               125899999999999999999999988876543

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=98.17  E-value=9.2e-06  Score=80.11  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=63.4

Q ss_pred             CCeeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeC--CeEE--EecCCc
Q 021654          196 NPVEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTK--GERF--DLTVGD  261 (309)
Q Consensus       196 ~~~~~~pgg~~~il~~~--~~-------~~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~--~~~~--~L~pGD  261 (309)
                      .++....||.+..+...  |.       ...+.+.||+..++|||+.. |++||++|++++.+...  .+.+  .|.+||
T Consensus       297 ~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~GD  376 (465)
T 3qac_A          297 ADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRGQ  376 (465)
T ss_dssp             CSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTC
T ss_pred             CCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCCe
Confidence            34555567777766432  21       26789999999999999865 66999999999987543  2344  499999


Q ss_pred             EEEECCCCeEEEEEcCCceE
Q 021654          262 YLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       262 ~v~IP~g~~H~~~n~gd~~~  281 (309)
                      +++||.|.+|...+ +++.+
T Consensus       377 VfvvP~g~~h~~~a-g~e~~  395 (465)
T 3qac_A          377 LVVVPQNFAIVKQA-FEDGF  395 (465)
T ss_dssp             EEEECTTCEEEEEE-EEEEE
T ss_pred             EEEECCCcEEEEEc-CCCCe
Confidence            99999999998764 44444

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=98.14  E-value=1.5e-05  Score=78.32  Aligned_cols=85  Identities=16%  Similarity=0.168  Sum_probs=64.4

Q ss_pred             CCCCeeecCCceEEEeeeCCC---------eEEEEEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCC----------e
Q 021654          194 ELNPVEMIPGGSMKIIRESPT---------SAIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKG----------E  253 (309)
Q Consensus       194 e~~~~~~~pgg~~~il~~~~~---------~~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~----------~  253 (309)
                      +-.+..-..+|.+..+....-         ...+.+.||+..++|||+...+ +||++|++++.+...+          +
T Consensus       253 ~~~p~~~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~~~~~g~~  332 (445)
T 2cav_A          253 SRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQ  332 (445)
T ss_dssp             SSCCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------C
T ss_pred             ccCCCccCCCceEEEeChHHCcccccCCCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCCcccccccCcc
Confidence            434444456776665533221         2678999999999999987655 9999999999875432          2


Q ss_pred             ----EEEecCCcEEEECCCCeEEEEEcCC
Q 021654          254 ----RFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       254 ----~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                          ...|++||.+++|.|.+|...|.++
T Consensus       333 ~~~~~~~l~~GdV~vvP~g~~h~~~n~~~  361 (445)
T 2cav_A          333 LRRYAATLSEGDIIVIPSSFPVALKAASD  361 (445)
T ss_dssp             CEEEEEEECTTCEEEECTTCCEEEEESSS
T ss_pred             eEEEEeEecCCcEEEEcCCcEEEEEcCCC
Confidence                5669999999999999999999854

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=98.13  E-value=3.9e-05  Score=66.04  Aligned_cols=78  Identities=15%  Similarity=0.194  Sum_probs=61.0

Q ss_pred             eEEEeeeCCCe--EEEEEcCCCcCCCeecCCce-EEEEEecEEEEEEe--eCC-----eEEEecCCcEEEECCCCeEEEE
Q 021654          205 SMKIIRESPTS--AIVRFKAGSVEPAHHHTFGH-DLVVLQGKKSVWNL--TKG-----ERFDLTVGDYLFTPAGDVHRVK  274 (309)
Q Consensus       205 ~~~il~~~~~~--~~~~l~pG~~~p~H~H~~~e-~vyVlsG~l~v~i~--~~~-----~~~~L~pGD~v~IP~g~~H~~~  274 (309)
                      .+.++..++..  .++.+.||+.++.|-|.... .+.||+|+++.+..  .++     ++..+.+||+++.|++.+|++.
T Consensus        59 tR~ll~~~~~~~v~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~  138 (171)
T 3eqe_A           59 GRNAIYRNNELEIIVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMS  138 (171)
T ss_dssp             EEEEEEECSSCEEEEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEE
T ss_pred             EEEEEecCCCeEEEEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEE
Confidence            34455544332  67899999999999999754 47799999997542  133     4788999999999999999999


Q ss_pred             EcCCceEE
Q 021654          275 YYEETEFF  282 (309)
Q Consensus       275 n~gd~~~~  282 (309)
                      |.++.+.+
T Consensus       139 N~~~~~aV  146 (171)
T 3eqe_A          139 NPTSERMV  146 (171)
T ss_dssp             CCSSSCEE
T ss_pred             CCCCCCEE
Confidence            99987664

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=98.12  E-value=1e-05  Score=78.83  Aligned_cols=95  Identities=17%  Similarity=0.249  Sum_probs=69.2

Q ss_pred             EeecCCCCCeeecCCceEEEeee----C---C---C--eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC--CeE
Q 021654          189 LVKNRELNPVEMIPGGSMKIIRE----S---P---T--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK--GER  254 (309)
Q Consensus       189 v~~~~e~~~~~~~pgg~~~il~~----~---~---~--~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~--~~~  254 (309)
                      +.+.+.|....-...|.++++..    .   +   .  -..+++.|++..++|+....+.+||++|++.+.+...  ..+
T Consensus         8 ~f~~~~f~~~~~se~G~i~~l~~f~~~s~~l~~l~~~~l~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~   87 (418)
T 3s7i_A            8 YFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKS   87 (418)
T ss_dssp             EECGGGEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEE
T ss_pred             ccccccccceEEcCCcEEEEecccCCcchhcccccceEEEEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEE
Confidence            44555566555566777877631    1   1   1  1567899999999994455555999999999965322  357


Q ss_pred             EEecCCcEEEECCCCeEEEEEcCCc-eEEE
Q 021654          255 FDLTVGDYLFTPAGDVHRVKYYEET-EFFI  283 (309)
Q Consensus       255 ~~L~pGD~v~IP~g~~H~~~n~gd~-~~~i  283 (309)
                      +.|++||.+++|+|.+|.+.|.++. .+.+
T Consensus        88 ~~l~~GDv~~~P~G~~h~~~N~g~~~~l~i  117 (418)
T 3s7i_A           88 FNLDEGHALRIPSGFISYILNRHDNQNLRV  117 (418)
T ss_dssp             EEEETTEEEEECTTCEEEEEECCSSCCEEE
T ss_pred             EEecCCCEEEECCCCeEEEEecCCCccEEE
Confidence            9999999999999999999998754 4443

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=98.02  E-value=1.2e-05  Score=80.18  Aligned_cols=72  Identities=11%  Similarity=0.052  Sum_probs=61.5

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC--------------------------------------------
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK--------------------------------------------  251 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~--------------------------------------------  251 (309)
                      ..+++.|++..++|+|+..+++||++|++.+-+...                                            
T Consensus        51 ~R~~i~p~Gl~lPh~~~a~el~yV~qG~g~~G~v~Pgcpet~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (531)
T 3fz3_A           51 SRITIQRNGLHLPSYSNAPQLIYIVQGRGVLGAVFSGCPETFEESQQSSQQGRQQEQEQERQQQQQGEQGRQQGQQEQQQ  130 (531)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEECCCC---------------------------------
T ss_pred             EEEEecCCCEeCCccCCCCeEEEEEECcEEEEEEcCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence            568999999999999999999999999998855321                                            


Q ss_pred             ----------------------------------------CeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654          252 ----------------------------------------GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       252 ----------------------------------------~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~  287 (309)
                                                              .+.+.+++||++.||+|+.|++.|.+++++++++..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~vr~GDviaiPaG~~~w~yN~G~~~l~iv~~~  206 (531)
T 3fz3_A          131 ERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIREGDVVAIPAGVAYWSYNDGDQELVAVNLF  206 (531)
T ss_dssp             ----------------------------------CCSCEESCCEEEETTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             ccccccccchhccccccccccccccccccccccccccccceeeecccCCcEEEECCCCeEEEEeCCCceEEEEEEE
Confidence                                                    124788999999999999999999999998776643

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=98.00  E-value=6.3e-05  Score=66.63  Aligned_cols=66  Identities=24%  Similarity=0.319  Sum_probs=55.1

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee---------CCeEEEecCCcEEEECC--CCeEEEEEc-CCceE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT---------KGERFDLTVGDYLFTPA--GDVHRVKYY-EETEF  281 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~---------~~~~~~L~pGD~v~IP~--g~~H~~~n~-gd~~~  281 (309)
                      .++.+.||+..|.|.|.....+.||+|+++.++..         .+++..+.+|+..++++  |.+|++.|. ++.+.
T Consensus        82 ~~l~w~PGq~spiHdH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~~~a  159 (208)
T 2gm6_A           82 VSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDRVS  159 (208)
T ss_dssp             EEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSSCE
T ss_pred             EEEEeCCCcccCcccCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCCCcE
Confidence            67889999999999999877799999999875421         13468999999999999  999999998 45544

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=97.98  E-value=3.9e-05  Score=74.78  Aligned_cols=86  Identities=20%  Similarity=0.170  Sum_probs=63.5

Q ss_pred             CCCCCeeecCCceEEEeeeCCC----------eEEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCC---------
Q 021654          193 RELNPVEMIPGGSMKIIRESPT----------SAIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKG---------  252 (309)
Q Consensus       193 ~e~~~~~~~pgg~~~il~~~~~----------~~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~---------  252 (309)
                      .+-.+.....+|+...+.....          ...+++.||+..++|||+ ..+++||++|++++.+...+         
T Consensus       233 ~~~~p~~~n~~G~~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~  312 (418)
T 3s7i_A          233 REGEPDLSNNFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRR  312 (418)
T ss_dssp             TCSCCSEEETTEEEEEECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC-------
T ss_pred             ccCCCceeCCCCeEEEechHHcchhhccCCeeEEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCcccccccc
Confidence            3344443456777665533211          267899999999999996 55669999999999764322         


Q ss_pred             ------------------e-EEEecCCcEEEECCCCeEEEEEcCC
Q 021654          253 ------------------E-RFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       253 ------------------~-~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                                        . ...|++||.+++|+|.+|...|.++
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~~  357 (418)
T 3s7i_A          313 EEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASSE  357 (418)
T ss_dssp             ------------CCEEEEEEEEEECTTCEEEECTTCCEEEEESSC
T ss_pred             ccccccccccccccccceEEEeeeCCCCEEEECCCCEEEEECCCC
Confidence                              1 4778999999999999999988765

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=97.89  E-value=3.3e-05  Score=64.19  Aligned_cols=62  Identities=15%  Similarity=0.074  Sum_probs=49.8

Q ss_pred             CcCCCeecCC-ceEEEEEecEEEEEEeeC------CeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          224 SVEPAHHHTF-GHDLVVLQGKKSVWNLTK------GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       224 ~~~p~H~H~~-~e~vyVlsG~l~v~i~~~------~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      ....+|.|+. +|.++|++|++++.+..+      ++...|+||+.+.||.|+.|+.....++.+++.=
T Consensus        40 ~i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~e~~vLLiE  108 (140)
T 3d0j_A           40 GIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKDTKMMYVQ  108 (140)
T ss_dssp             TCCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECTTCEEEEEE
T ss_pred             cCHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCCceEEEEEE
Confidence            3446798875 556999999999976521      4579999999999999999999998888776543

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.74  E-value=8.1e-05  Score=69.70  Aligned_cols=72  Identities=22%  Similarity=0.371  Sum_probs=57.3

Q ss_pred             EEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEe--eCCeEEEecC-C---cEEEECCCCeEEEEEcCCceE-EEEEcC
Q 021654          216 AIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNL--TKGERFDLTV-G---DYLFTPAGDVHRVKYYEETEF-FIKWDG  287 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~--~~~~~~~L~p-G---D~v~IP~g~~H~~~n~gd~~~-~i~~~~  287 (309)
                      .+.+.+||....+|+|... |.++|++|+..+.+.  +.++.+.+.. |   +.++||+|..|.+.|.+++++ ++.|..
T Consensus       275 ~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~~~~  354 (369)
T 3st7_A          275 SVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVN  354 (369)
T ss_dssp             EEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEEEES
T ss_pred             EEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEEEecC
Confidence            5678899999999999865 559999999998442  3467788887 8   899999999999999995444 444443

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=97.74  E-value=0.00025  Score=65.26  Aligned_cols=61  Identities=16%  Similarity=0.208  Sum_probs=49.3

Q ss_pred             CCCcCCCeecC-CceEEEEEecEEEEEEeeCC--eEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          222 AGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       222 pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~--~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      |+....+| |+ .+|++|+++|.+.+.+..++  +...|++|+.+++|+|++|+-....++..++
T Consensus        40 pN~R~d~H-~~~~dE~FyqlkG~m~l~~~d~g~~~~V~i~eGemfllP~gv~HsP~r~~et~gLv  103 (286)
T 2qnk_A           40 PNTRKDYH-IEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLV  103 (286)
T ss_dssp             CBCCCCEE-ECSSCEEEEEEESCEEEEEEETTEEEEEEECTTEEEEECTTCCEEEEECTTCEEEE
T ss_pred             CCcCccCc-CCCCCeEEEEEeCeEEEEEEeCCceeeEEECCCeEEEeCCCCCcCCcccCCeEEEE
Confidence            45568899 65 45669999999999876433  3799999999999999999998877766554

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.60  E-value=0.00081  Score=54.22  Aligned_cols=63  Identities=13%  Similarity=0.174  Sum_probs=49.3

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      .+....||... ++.+...|+.|+|+|+++++. .+++...+.+||.+++|+|..-.+.-.+...
T Consensus        45 GvWe~tPG~~~-~~~~~~~E~~~iLeG~~~lt~-ddG~~~~l~aGD~~~~P~G~~gtWev~e~vr  107 (116)
T 3es4_A           45 AVWMAEPGIYN-YAGRDLEETFVVVEGEALYSQ-ADADPVKIGPGSIVSIAKGVPSRLEILSSFR  107 (116)
T ss_dssp             EEEEECSEEEE-ECCCSEEEEEEEEECCEEEEE-TTCCCEEECTTEEEEECTTCCEEEEECSCEE
T ss_pred             EEEecCCceeE-CeeCCCcEEEEEEEeEEEEEe-CCCeEEEECCCCEEEECCCCeEEEEEeEEEe
Confidence            55667777533 344555688999999999974 4678899999999999999999998876544

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=97.59  E-value=0.0001  Score=66.47  Aligned_cols=48  Identities=4%  Similarity=-0.038  Sum_probs=44.1

Q ss_pred             CCCeecCCceEEEEEecEEEEEEeeCCe---EEEecCCcEEEECCCCeEEEEEc
Q 021654          226 EPAHHHTFGHDLVVLQGKKSVWNLTKGE---RFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       226 ~p~H~H~~~e~vyVlsG~l~v~i~~~~~---~~~L~pGD~v~IP~g~~H~~~n~  276 (309)
                      .+.|+|+..+++||++|+++ .++  ++   .+.+.+||.+++|||.+|.+...
T Consensus        22 ~~~~~~~~~~i~~v~~G~~~-~i~--~~~~~~~~l~~g~l~~i~p~~~h~~~~~   72 (276)
T 3gbg_A           22 FNNLYINDYKMFWIDSGIAK-LID--KNCLVSYEINSSSIILLKKNSIQRFSLT   72 (276)
T ss_dssp             EEEEECSSCEEEEESSSCEE-EEE--TTTTEEEEECTTEEEEECTTCEEEEEEE
T ss_pred             ccHhhhcceEEEEEecCceE-EEC--CccceeEEEcCCCEEEEcCCCceeeccc
Confidence            47899999999999999999 765  77   99999999999999999999876

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=97.51  E-value=0.00032  Score=61.68  Aligned_cols=66  Identities=21%  Similarity=0.177  Sum_probs=54.0

Q ss_pred             EEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEee---C-------CeEEEecCCcEEEE-CCCCeEEEEEcC-CceE
Q 021654          216 AIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLT---K-------GERFDLTVGDYLFT-PAGDVHRVKYYE-ETEF  281 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~---~-------~~~~~L~pGD~v~I-P~g~~H~~~n~g-d~~~  281 (309)
                      .++.+.||..+|.|-|.. ...+.||+|+++-+...   +       .....+.+|++.++ |++-.|++.|.+ +.+.
T Consensus        73 ~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s~~~~a  151 (200)
T 3eln_A           73 MILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSHTEPA  151 (200)
T ss_dssp             EEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCSSCCE
T ss_pred             EEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCCCCCCE
Confidence            568999999999999995 56699999999975421   1       23689999999999 888899999998 4444

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=97.51  E-value=0.00036  Score=62.33  Aligned_cols=82  Identities=18%  Similarity=0.273  Sum_probs=63.4

Q ss_pred             CCceEEEeeeCCC--eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEE-cCC
Q 021654          202 PGGSMKIIRESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY-YEE  278 (309)
Q Consensus       202 pgg~~~il~~~~~--~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n-~gd  278 (309)
                      +|.+...|.....  ..+++++||...+.|.| ..++++||+|++.-    ++  -.+++|+.+..|++..|...+ ...
T Consensus       133 ~Gv~~~~L~~~~~E~v~l~r~~~G~~~~~~~h-gG~EilVL~G~~~d----~~--~~~~~GsWlR~P~gs~h~~~ag~~g  205 (223)
T 3o14_A          133 EGISTSLLHEDERETVTHRKLEPGANLTSEAA-GGIEVLVLDGDVTV----ND--EVLGRNAWLRLPEGEALSATAGARG  205 (223)
T ss_dssp             TTEEEEEEEECSSCEEEEEEECTTCEEEECCS-SCEEEEEEEEEEEE----TT--EEECTTEEEEECTTCCEEEEEEEEE
T ss_pred             CCeEEEEEecCCCcEEEEEEECCCCccCCCCC-CcEEEEEEEeEEEE----CC--ceECCCeEEEeCCCCccCcEECCCC
Confidence            5666666665542  37899999999999999 78888999999775    23  488999999999999999988 445


Q ss_pred             ceEEEEEcCcccc
Q 021654          279 TEFFIKWDGRWDM  291 (309)
Q Consensus       279 ~~~~i~~~~~~~i  291 (309)
                      +.++++- |++..
T Consensus       206 ~~i~~k~-ghl~~  217 (223)
T 3o14_A          206 AKIWMKT-GHLRF  217 (223)
T ss_dssp             EEEEEEE-SGGGG
T ss_pred             eEEEEEe-cCCCC
Confidence            5555554 66643

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.46  E-value=0.0004  Score=62.71  Aligned_cols=67  Identities=16%  Similarity=0.223  Sum_probs=52.0

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE-EEEc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF-IKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~-i~~~  286 (309)
                      .++.+ .|.... -.+++.|..|||+|+++++.  +++.+.++|||+++||.|..|++...+....+ +.+.
T Consensus        50 G~~~~-~g~~~v-~~~p~dE~~~VleG~~~lt~--~g~~~~~~~Gd~~~ip~G~~~~w~~~~~~~~~y~~~~  117 (238)
T 3myx_A           50 GIVEF-GTALSV-EAYPYTEMLVMHRGSVTLTS--GTDSVTLSTGESAVIGRGTQVRIDAQPESLWAFCAST  117 (238)
T ss_dssp             EEEEE-CSEEEE-SSCSSEEEEEEEESEEEEEE--TTEEEEEETTCEEEECTTCCEEEEECTTEEEEEEEEC
T ss_pred             EEEEe-cccccc-ccCCCcEEEEEEEeEEEEEC--CCeEEEEcCCCEEEECCCCEEEEEecCCeEEEEEecc
Confidence            56677 554433 22445789999999999964  69999999999999999999999998876543 4444

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=97.41  E-value=0.0016  Score=57.70  Aligned_cols=76  Identities=18%  Similarity=0.219  Sum_probs=58.3

Q ss_pred             EEEeeeCCC----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEe--e-CC------eEEEecCCcEEEECCC--Ce
Q 021654          206 MKIIRESPT----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNL--T-KG------ERFDLTVGDYLFTPAG--DV  270 (309)
Q Consensus       206 ~~il~~~~~----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~--~-~~------~~~~L~pGD~v~IP~g--~~  270 (309)
                      ..++..++.    -.++.+.||..+|.|-|.....+.|++|+++-+..  . ++      +...+.+|++.+++++  .+
T Consensus        62 r~lL~~dp~~~f~v~~l~W~PGq~spiHDH~swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~I  141 (211)
T 3uss_A           62 QYLLHVDSRQRFSVVSFVWGPGQITPVHDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDV  141 (211)
T ss_dssp             EEEEEECTTSSCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCC
T ss_pred             EEEEecCCCCCEEEEEEEECCCCcCCCCCCCeeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCE
Confidence            345555442    26789999999999999977779999999987542  1 12      2488999999999998  89


Q ss_pred             EEEEEcC-CceE
Q 021654          271 HRVKYYE-ETEF  281 (309)
Q Consensus       271 H~~~n~g-d~~~  281 (309)
                      |++.|.. +.+.
T Consensus       142 H~V~N~~~d~~a  153 (211)
T 3uss_A          142 HQVSNAFSDRTS  153 (211)
T ss_dssp             EEEEESCSSSCE
T ss_pred             EEEccCCCCCCE
Confidence            9999985 5543

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=97.40  E-value=0.0013  Score=54.73  Aligned_cols=72  Identities=15%  Similarity=0.120  Sum_probs=52.7

Q ss_pred             EEEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCC--eEEEecCCc-EEEECCCCeEEEEEcCC-ceEEEEEcCcc
Q 021654          218 VRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKG--ERFDLTVGD-YLFTPAGDVHRVKYYEE-TEFFIKWDGRW  289 (309)
Q Consensus       218 ~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~--~~~~L~pGD-~v~IP~g~~H~~~n~gd-~~~~i~~~~~~  289 (309)
                      ..++||....+|.|...++ +++++|+..+.+..+.  +++.|...+ .++|||++.|.+.+.++ +.++++-.+..
T Consensus        40 ~~~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~ldDg~~~~~~~L~~~~~gL~IppgvWh~~~~~s~~avllvlas~~Y  116 (141)
T 2pa7_A           40 FDTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSDCVMMVLASDYY  116 (141)
T ss_dssp             ESCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTTCEEEEEESSCC
T ss_pred             EecCCCCEECcCcCCCceEEEEEEccEEEEEEECCcEEEEEEECCCCcEEEeCCCEEEEEEEcCCCeEEEEECCCCc
Confidence            3455888899999976554 9999999999775332  356666554 69999999999999875 44555544444

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.25  E-value=0.0036  Score=56.47  Aligned_cols=63  Identities=11%  Similarity=0.140  Sum_probs=50.8

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      .+....||...+++ |+..|+.|||+|+++++. .+++.+.+++||.+++|+|..=.|.-.+...
T Consensus       170 GiW~~tpG~~~~~~-~~~~E~~~ILeG~v~lt~-~~G~~~~~~aGD~~~~P~G~~~tWev~e~vr  232 (238)
T 3myx_A          170 GVWDSTPYERISRP-HKIHELMNLIEGRVVLSL-ENGSSLTVNTGDTVFVAQGAPCKWTSTGYVR  232 (238)
T ss_dssp             EEEEECCEEBCCEE-CSSCEEEEEEECCEEEEE-TTSCEEEECTTCEEEECTTCEEEEEESSCEE
T ss_pred             eEEEeCCCEEECCc-CCCCEEEEEEEeEEEEEe-CCCCEEEECCCCEEEECCCCEEEEEECccEE
Confidence            67778888755543 456789999999999963 4678899999999999999999888776433

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=96.92  E-value=0.0033  Score=56.45  Aligned_cols=63  Identities=22%  Similarity=0.409  Sum_probs=49.4

Q ss_pred             EEEEEcCCCcCCCeecCCceE-EEEEec---EEEEEEee--------------C--------CeEEEecCCcEEEECCCC
Q 021654          216 AIVRFKAGSVEPAHHHTFGHD-LVVLQG---KKSVWNLT--------------K--------GERFDLTVGDYLFTPAGD  269 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~-vyVlsG---~l~v~i~~--------------~--------~~~~~L~pGD~v~IP~g~  269 (309)
                      .++.+.+|+..|.|.|+.-++ +++.-|   .++++...              +        +....|.||+++.++||+
T Consensus       109 K~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl~Pg~  188 (246)
T 3kmh_A          109 KIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICLPPGL  188 (246)
T ss_dssp             EEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEECTTE
T ss_pred             eEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEecCCCC
Confidence            567889999999999988776 777777   44544321              1        244688999999999999


Q ss_pred             eEEEEEcCC
Q 021654          270 VHRVKYYEE  278 (309)
Q Consensus       270 ~H~~~n~gd  278 (309)
                      .|+|+..++
T Consensus       189 ~H~F~ae~g  197 (246)
T 3kmh_A          189 YHSFWAEAG  197 (246)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEecCC
Confidence            999999876

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=96.88  E-value=0.0041  Score=56.67  Aligned_cols=60  Identities=13%  Similarity=0.133  Sum_probs=51.5

Q ss_pred             EEEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECC--CCeEEEEEcCC
Q 021654          218 VRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPA--GDVHRVKYYEE  278 (309)
Q Consensus       218 ~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~--g~~H~~~n~gd  278 (309)
                      .++.||..+++|.|...|. .||++|+++-. +.-+..-.+.|||+-|+.+  |+.|+-.|..+
T Consensus        69 ~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~-DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~n~~~  131 (256)
T 2vec_A           69 EVLAPGAAFQPRTYPKVDILNVILDGEAEYR-DSEGNHVQASAGEALLLSTQPGVSYSEHNLSK  131 (256)
T ss_dssp             EEECTTCEEEEECCSSEEEEEEEEESEEEEE-ETTSCEEEEETTEEEEECCCTTCCEEEEECCS
T ss_pred             cccCCCCccCCcCCCCcEEEEEEEeeEEEEE-eCCCCEEEECCCeEEEEECCCCeEEEEEECCC
Confidence            4788999999999999997 89999999985 4447889999999999955  57999999753

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=96.78  E-value=0.0087  Score=51.45  Aligned_cols=64  Identities=13%  Similarity=0.004  Sum_probs=49.4

Q ss_pred             EEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCC---------eEEEec---CCcEEEECCCCeEEEEEcCC-ceEE
Q 021654          219 RFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKG---------ERFDLT---VGDYLFTPAGDVHRVKYYEE-TEFF  282 (309)
Q Consensus       219 ~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~---------~~~~L~---pGD~v~IP~g~~H~~~n~gd-~~~~  282 (309)
                      ...+|....+|.|. ..+.++|++|++.+.+....         ..+.|.   +...+|||+|..|.+.+.++ ...+
T Consensus        59 ~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~  136 (174)
T 3ejk_A           59 EVLPRRVKAWKRHSLMTQLFAVPVGCIHVVLYDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALV  136 (174)
T ss_dssp             EECBTCEEEEEEESSCCEEEEEEESEEEEEEECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEE
T ss_pred             ECCCCCEECcEecCCCceEEEEEeeEEEEEEEeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEE
Confidence            34678888999986 56669999999998653222         367787   56799999999999999987 3443

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=96.71  E-value=0.0053  Score=53.38  Aligned_cols=61  Identities=23%  Similarity=0.266  Sum_probs=47.1

Q ss_pred             cCCCcCCCeecCCceEEEEEecEEEEEEeeC-------------------------------------CeEEEecCCcEE
Q 021654          221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK-------------------------------------GERFDLTVGDYL  263 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~-------------------------------------~~~~~L~pGD~v  263 (309)
                      .+|+..+.|..+..-++.++.|+-++.+.-.                                     .-+.+|+|||.+
T Consensus       132 ~~gs~t~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~L  211 (235)
T 4gjz_A          132 PQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEIL  211 (235)
T ss_dssp             CTTCEEEEECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTTCEE
T ss_pred             CCCCCceeeeccccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCCCEE
Confidence            3466677787777667888999999876311                                     125789999999


Q ss_pred             EECCCCeEEEEEcCCceE
Q 021654          264 FTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       264 ~IP~g~~H~~~n~gd~~~  281 (309)
                      |||+|-.|.++|.+++..
T Consensus       212 yiP~gW~H~V~~l~~sis  229 (235)
T 4gjz_A          212 FIPVKYWHYVRALDLSFS  229 (235)
T ss_dssp             EECTTCEEEEEESSSEEE
T ss_pred             EeCCCCcEEEEECCCEEE
Confidence            999999999999986544

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=96.62  E-value=0.0096  Score=54.14  Aligned_cols=77  Identities=22%  Similarity=0.278  Sum_probs=58.0

Q ss_pred             ceEEEeeeCC---CeEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeE-EEEEcCCc
Q 021654          204 GSMKIIRESP---TSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVH-RVKYYEET  279 (309)
Q Consensus       204 g~~~il~~~~---~~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H-~~~n~gd~  279 (309)
                      |+.|++.-..   .+..+.|+|+...|.=.|...-++|||+|++.+  +    .+.|.++.+.++|+|+.- .++..++.
T Consensus        79 gs~RlLs~~d~GaSTl~V~fpp~~~~P~Gi~~ad~E~fVL~G~i~~--G----~~~l~~h~Y~f~PaGV~~~~~kv~~~~  152 (303)
T 2qdr_A           79 GSRRLLTWHDSGASTSRVVLPPKFEAPSGIFTADLEIFVIKGAIQL--G----EWQLNKHSYSFIPAGVRIGSWKVLGGE  152 (303)
T ss_dssp             EEEEEEEECTTSCEEEEEEECTTCEECCBEESSCEEEEEEESEEEE--T----TEEECTTEEEEECTTCCBCCEEEETTS
T ss_pred             cceeecccCCCCcceEEEEecCCCCCCCcccccceEEEEEEeEEEe--C----CEEecCCceEEecCCCccCceeecCCC
Confidence            4555543321   237899999999999888888889999999999  2    468999999999999976 45665655


Q ss_pred             eEEEEEc
Q 021654          280 EFFIKWD  286 (309)
Q Consensus       280 ~~~i~~~  286 (309)
                      .+.++|-
T Consensus       153 g~~iL~f  159 (303)
T 2qdr_A          153 EAEILWM  159 (303)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            5554444

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=96.54  E-value=0.009  Score=53.87  Aligned_cols=59  Identities=20%  Similarity=0.142  Sum_probs=50.7

Q ss_pred             EEEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECC--CCeEEEEEcC
Q 021654          218 VRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPA--GDVHRVKYYE  277 (309)
Q Consensus       218 ~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~--g~~H~~~n~g  277 (309)
                      ..+.||...++|.|...|. .||++|+++-. +.-+..-.+.|||+-|+.+  |+.|+-.|..
T Consensus        46 d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~-DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~~~~  107 (242)
T 1tq5_A           46 DVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ-DSMGNKEQVPAGEFQIMSAGTGIRHSEYNPS  107 (242)
T ss_dssp             EEECTTCEEEEEEECSCEEEEEEEESEEEEE-ESSSCEEEEETTCEEEEECTTCEEEEEECCC
T ss_pred             ceeCCCCcCCCcCCCCcEEEEEEEEeEEEEE-eCCCCcEEECCCcEEEEECCCCcEEEEEcCC
Confidence            4678999999999999997 89999999985 4447889999999999955  5899999865

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=96.50  E-value=0.0074  Score=55.48  Aligned_cols=47  Identities=23%  Similarity=0.189  Sum_probs=42.0

Q ss_pred             ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          234 GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       234 ~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      +-++++|+|+..|+  .+++++.|++||++.||+++.|.+....++.++
T Consensus       227 d~wiWqLEGss~Vt--~~~q~~~L~~~DsLLIpa~~~y~~~r~~gsv~L  273 (286)
T 2qnk_A          227 DVWLWQLEGSSVVT--MGGRRLSLAPDDSLLVLAGTSYAWERTQGSVAL  273 (286)
T ss_dssp             CEEEEEEESCEEEE--ETTEEEEECTTEEEEECTTCCEEEEECTTCEEE
T ss_pred             cEEEEEEcCceEEE--ECCeEEeccCCCEEEecCCCeEEEEecCCeEEE
Confidence            67799999999984  569999999999999999999999987777764

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=96.42  E-value=0.021  Score=53.92  Aligned_cols=65  Identities=25%  Similarity=0.313  Sum_probs=49.1

Q ss_pred             CCCcCCCeecCCceEEEEEecEEEEEEe-e------------------------------------CCeEEEecCCcEEE
Q 021654          222 AGSVEPAHHHTFGHDLVVLQGKKSVWNL-T------------------------------------KGERFDLTVGDYLF  264 (309)
Q Consensus       222 pG~~~p~H~H~~~e~vyVlsG~l~v~i~-~------------------------------------~~~~~~L~pGD~v~  264 (309)
                      .|+.+++|+.+..-++..+.|+-++++. -                                    .....+|+|||.+|
T Consensus       150 ~g~~~~~H~D~~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~pGD~Ly  229 (342)
T 1vrb_A          150 NGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLY  229 (342)
T ss_dssp             SSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCEEE
T ss_pred             CCCCCCCeECChhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEECCCcEEE
Confidence            3777888888777778888888887665 1                                    12467999999999


Q ss_pred             ECCCCeEEEEEcCC-ceEEEEEc
Q 021654          265 TPAGDVHRVKYYEE-TEFFIKWD  286 (309)
Q Consensus       265 IP~g~~H~~~n~gd-~~~~i~~~  286 (309)
                      ||+|-.|.+.+.++ ..+-+.+.
T Consensus       230 iP~gwwH~v~s~~~~~slsvsi~  252 (342)
T 1vrb_A          230 LPRGLWHSTKSDQATLALNITFG  252 (342)
T ss_dssp             ECTTCEEEEECSSCEEEEEEEEC
T ss_pred             eCCCccEEEEECCCCceEEEEEC
Confidence            99999999999854 34444433

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=96.40  E-value=0.0063  Score=49.66  Aligned_cols=71  Identities=17%  Similarity=0.278  Sum_probs=49.7

Q ss_pred             CCCcCCCe---e-cCCc-eEEEEEecEEEEEEeeC------CeEEEecCCcEEEECCCCeEEEEEc-CCceEEEEEcCcc
Q 021654          222 AGSVEPAH---H-HTFG-HDLVVLQGKKSVWNLTK------GERFDLTVGDYLFTPAGDVHRVKYY-EETEFFIKWDGRW  289 (309)
Q Consensus       222 pG~~~p~H---~-H~~~-e~vyVlsG~l~v~i~~~------~~~~~L~pGD~v~IP~g~~H~~~n~-gd~~~~i~~~~~~  289 (309)
                      |+...+.|   . |... ..+.|++|++++....+      .+...+++|+..++||+..|++... +|..+.|      
T Consensus        23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsdd~~f~l------   96 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNI------   96 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEE------
T ss_pred             hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCCCEEEEE------
Confidence            34455667   3 5432 33899999999864222      3557789999999999999999984 5666654      


Q ss_pred             ccccchhHH
Q 021654          290 DMFFDEDLE  298 (309)
Q Consensus       290 ~i~~~e~~~  298 (309)
                      ++|.+++-+
T Consensus        97 eFyc~~~dy  105 (127)
T 3bb6_A           97 DFFVAPEVL  105 (127)
T ss_dssp             EEEECHHHH
T ss_pred             EEEeCCchh
Confidence            566666543

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=96.12  E-value=0.015  Score=50.96  Aligned_cols=62  Identities=15%  Similarity=0.304  Sum_probs=49.5

Q ss_pred             cCCCcCCCeecCCceEEEEEe-cEE-EEEEeeC-----C--eEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          221 KAGSVEPAHHHTFGHDLVVLQ-GKK-SVWNLTK-----G--ERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVls-G~l-~v~i~~~-----~--~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      .+|....+|.|.+.+.++|++ |++ .+.+...     +  ..+.|..+..+|||+|..|.+.+.++...+
T Consensus        68 ~~GvlRGlH~h~q~Klv~~~~~G~v~dV~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~a~~  138 (197)
T 1nxm_A           68 RKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAY  138 (197)
T ss_dssp             ETTBEEEEEECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEE
T ss_pred             CCCCcceeeecccceEEEEcCCCEEEEEEEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCCeEE
Confidence            567788999999999999999 995 4444332     1  457888899999999999999999875543

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=96.10  E-value=0.021  Score=50.27  Aligned_cols=65  Identities=17%  Similarity=0.150  Sum_probs=48.1

Q ss_pred             cCCCcCCCeecC----CceEEEEEecEEEE-EEe--eCC------eEEEecC--CcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          221 KAGSVEPAHHHT----FGHDLVVLQGKKSV-WNL--TKG------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVlsG~l~v-~i~--~~~------~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      .+|....+|.|.    +.+.++|++|++.. .+.  .+.      ..+.|.+  +..+|||+|..|.+.+.++...++.+
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~a~~~Y~  157 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDVIVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPHTIVMYK  157 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEEEEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSSEEEEEE
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCCEEEEEE
Confidence            578888999984    67789999999643 222  121      3467775  78999999999999999876554443

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=95.89  E-value=0.038  Score=47.85  Aligned_cols=65  Identities=17%  Similarity=0.123  Sum_probs=47.6

Q ss_pred             cCCCcCCCeec---CCceEEEEEecEEE-EEEeeCC--------eEEEecC--CcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          221 KAGSVEPAHHH---TFGHDLVVLQGKKS-VWNLTKG--------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       221 ~pG~~~p~H~H---~~~e~vyVlsG~l~-v~i~~~~--------~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      .+|....+|.|   .+.+.++|++|++. +.+....        ..+.|.+  +..+|||+|..|.+.+.++...++.+
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  134 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYK  134 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEe
Confidence            36888899988   67778999999974 3333211        2366654  57999999999999999976554443

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=95.82  E-value=0.0094  Score=44.62  Aligned_cols=34  Identities=18%  Similarity=0.220  Sum_probs=29.5

Q ss_pred             EEEEEcCCCcCCCeecCCceE-EEEEecEEEEEEe
Q 021654          216 AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNL  249 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~  249 (309)
                      ..+.+.+|+..++|||+...+ +||++|++.+++.
T Consensus        39 ~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~V   73 (79)
T 1dgw_X           39 NCLQMNEGALFVPHYNSRATVILVANEGRAEVELV   73 (79)
T ss_dssp             EEEEECTTCEEEEEEESSCEEEEEEEESCEEEEEE
T ss_pred             EEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEEe
Confidence            567899999999999997755 9999999999653

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=95.75  E-value=0.046  Score=47.29  Aligned_cols=65  Identities=18%  Similarity=0.117  Sum_probs=47.5

Q ss_pred             cCCCcCCCeec---CCceEEEEEecEEE-EEEeeCC--------eEEEecC--CcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          221 KAGSVEPAHHH---TFGHDLVVLQGKKS-VWNLTKG--------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       221 ~pG~~~p~H~H---~~~e~vyVlsG~l~-v~i~~~~--------~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      .+|....+|.|   .+.+.++|++|++. +.+....        ..+.|.+  +..+|||+|..|.+.+.++...++.+
T Consensus        57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  135 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYK  135 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CCCceeeEEeCCCCCcCEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCCEEEEEe
Confidence            36888899988   67778999999974 3333211        2356665  57999999999999999976554443

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=95.72  E-value=0.048  Score=51.18  Aligned_cols=82  Identities=28%  Similarity=0.247  Sum_probs=55.8

Q ss_pred             cCCCcCCCeecCCceEEEEEecEEEEEEeeC---------------------------------CeEEEecCCcEEEECC
Q 021654          221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK---------------------------------GERFDLTVGDYLFTPA  267 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~---------------------------------~~~~~L~pGD~v~IP~  267 (309)
                      .+|+..+.|..+..-++.++.|+-++.+.-.                                 ..+.+|.|||.+|||+
T Consensus       175 ~~g~~~~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pGD~LyiP~  254 (338)
T 3al5_A          175 SPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPA  254 (338)
T ss_dssp             CTTCEEEEECCSSEEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTTCEEEECT
T ss_pred             CCCCCccceECCcccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCCCEEEECC
Confidence            4566677787777666777888888764310                                 2468999999999999


Q ss_pred             CCeEEEEEcCCceEE-EEEcCcc-------ccccchhHHHHHH
Q 021654          268 GDVHRVKYYEETEFF-IKWDGRW-------DMFFDEDLEAAKK  302 (309)
Q Consensus       268 g~~H~~~n~gd~~~~-i~~~~~~-------~i~~~e~~~~~~~  302 (309)
                      |-.|.+.+.+.+..+ +.|....       ++|-++|+..+.+
T Consensus       255 gWwH~v~~l~~sisvn~~~~~~~~~~~~~~~~y~~~dl~~~~~  297 (338)
T 3al5_A          255 LWFHNVISEEFGVGVNIFWKHLPSECYDKTDTYGNKDPTAASR  297 (338)
T ss_dssp             TCEEEEEESSCEEEEEEEECSSCGGGSCTTCSSSCSCCHHHHH
T ss_pred             CCeEEEeeCCCEEEEEEEecCCccccCCcccccccCCchHHHH
Confidence            999999999765543 3454332       3455555544433

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=95.62  E-value=0.06  Score=47.06  Aligned_cols=66  Identities=20%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             cCCCcCCCeecC----CceEEEEEecEEE-EEEeeC-C-------eEEEecC--CcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          221 KAGSVEPAHHHT----FGHDLVVLQGKKS-VWNLTK-G-------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVlsG~l~-v~i~~~-~-------~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      .+|....+|.|.    +.+.++|++|++. +.+... +       ..+.|.+  +..+|||+|..|.+.+.++...++.+
T Consensus        73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~a~~ly~  152 (196)
T 1wlt_A           73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFI  152 (196)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEE
T ss_pred             CCCcceeEEccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEE
Confidence            467778899886    5677999999994 333211 1       3466664  68999999999999999986655554


Q ss_pred             c
Q 021654          286 D  286 (309)
Q Consensus       286 ~  286 (309)
                      .
T Consensus       153 ~  153 (196)
T 1wlt_A          153 T  153 (196)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=95.61  E-value=0.048  Score=50.02  Aligned_cols=61  Identities=20%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             EEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCC--CeEEEEEcCCce
Q 021654          219 RFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEETE  280 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g--~~H~~~n~gd~~  280 (309)
                      ...++..+++|.|...|. .|+++|.++-. +.-+..-.+.|||+-|+-+|  +.|+-.|..+.+
T Consensus        45 ~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~-DS~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~~~~  108 (277)
T 2p17_A           45 DIFERGTFDVHPHRGIETVTYVISGELEHF-DSKAGHSTLGPGDVQWMTAGRGVVHKEDPASGST  108 (277)
T ss_dssp             EEECTTCCCCEEECSEEEEEEEEESCEEEE-ETTTEEEEECTTCEEEEECTTCEEEEEEECTTCC
T ss_pred             CCCCCCCCCCCCCCCcEEEEEEEEeEEEEe-eCCCCceEECCCeEEEEeCCCCEEEEeecCCCCC
Confidence            446788899999999997 89999999985 55578899999999999885  579999976543

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=95.43  E-value=0.075  Score=45.87  Aligned_cols=64  Identities=17%  Similarity=0.129  Sum_probs=46.7

Q ss_pred             CCCcCCCeec----CCceEEEEEecEEE-EEEeeC-C-------eEEEecC--CcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          222 AGSVEPAHHH----TFGHDLVVLQGKKS-VWNLTK-G-------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       222 pG~~~p~H~H----~~~e~vyVlsG~l~-v~i~~~-~-------~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      +|....+|.|    .+.+.++|++|++. +.+... +       ..+.|.+  +..+|||+|..|.+.+.++...++.+
T Consensus        56 ~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  134 (183)
T 1dzr_A           56 KNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYK  134 (183)
T ss_dssp             TTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEE
Confidence            6888889988    56777999999974 333321 1       3366665  57999999999999999976554443

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=95.14  E-value=0.065  Score=47.51  Aligned_cols=65  Identities=14%  Similarity=0.006  Sum_probs=47.2

Q ss_pred             cCCCcCCCeecC----CceEEEEEecEEE-EEEee--C------CeEEEecC--CcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          221 KAGSVEPAHHHT----FGHDLVVLQGKKS-VWNLT--K------GERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVlsG~l~-v~i~~--~------~~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      .+|....+|.|.    +.+.++|++|++. +.+..  +      -..+.|.+  +..+|||+|..|.+.+.++...++.+
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~~ly~  142 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  142 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCCeEEEEe
Confidence            467778899886    5788999999974 33221  1      13366665  47999999999999999976655443

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=95.00  E-value=0.13  Score=50.12  Aligned_cols=56  Identities=29%  Similarity=0.389  Sum_probs=44.8

Q ss_pred             CCCc-CCCeecCCceEEEEEecEEEEEEeeC-------------------CeEEEecCCcEEEECCCCeEEEEEcC
Q 021654          222 AGSV-EPAHHHTFGHDLVVLQGKKSVWNLTK-------------------GERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       222 pG~~-~p~H~H~~~e~vyVlsG~l~v~i~~~-------------------~~~~~L~pGD~v~IP~g~~H~~~n~g  277 (309)
                      +|+. .++|+....-++..+.|+-++++...                   ....+|.|||.+|||+|..|..++.+
T Consensus       148 ~g~~g~~~H~D~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~  223 (442)
T 2xdv_A          148 AGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPA  223 (442)
T ss_dssp             TTCBCSCSEECSSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred             CCCCCccceECCcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEecC
Confidence            4444 37999887778888999998875322                   23689999999999999999999875

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=94.93  E-value=0.12  Score=47.10  Aligned_cols=73  Identities=15%  Similarity=0.111  Sum_probs=57.2

Q ss_pred             eEEEeeeCCCe---EEEEEcCCCcC-CCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEE--------
Q 021654          205 SMKIIRESPTS---AIVRFKAGSVE-PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR--------  272 (309)
Q Consensus       205 ~~~il~~~~~~---~~~~l~pG~~~-p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~--------  272 (309)
                      ..++++.++..   .++++.||... ..-.|+..|++|+|+|.+             ..|++.+-|++++|.        
T Consensus       206 ~~K~Lr~D~~G~~TrLlr~~Pg~dt~~v~iHdy~EEvY~LeG~~-------------d~G~Y~~RPpg~~HGps~~~~pp  272 (303)
T 2qdr_A          206 NKKWLRKDINGGGVWLLAILPHFDNKYQMIQPYNEEGYCLTGYC-------------DVGDYRIVKDHYWYCPSFSTLPR  272 (303)
T ss_dssp             EEEEEEECTTSCEEEEEEECSSEECCSEEEECSCEEEEEEEEEE-------------EETTEEEETTEEEEECTTEEECC
T ss_pred             HHHHhhcCCCCCeEEEEEECCCCCCCCceeeccceeEEEEeeec-------------cCceeeEcCCCCccCccccCCCC
Confidence            56677766543   78899999765 445699999999999977             349999999999998        


Q ss_pred             EEEcCCceEEEEEcCccc
Q 021654          273 VKYYEETEFFIKWDGRWD  290 (309)
Q Consensus       273 ~~n~gd~~~~i~~~~~~~  290 (309)
                      +.....+.+++..++.++
T Consensus       273 f~Se~G~l~fvR~DgdLs  290 (303)
T 2qdr_A          273 HITDDGGLFFVRVDRDLS  290 (303)
T ss_dssp             EEESSCEEEEEEESSCTT
T ss_pred             cCcCCceEEEEEeCcccc
Confidence            555566777888887765

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=94.93  E-value=0.13  Score=45.17  Aligned_cols=64  Identities=17%  Similarity=0.188  Sum_probs=46.3

Q ss_pred             cCCCcCCCeecC----CceEEEEEecEEE-EEEeeC-C-------eEEEecC--CcEEEECCCCeEEEEEcCCceEEEE
Q 021654          221 KAGSVEPAHHHT----FGHDLVVLQGKKS-VWNLTK-G-------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVlsG~l~-v~i~~~-~-------~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      .+|....+|.|.    +.+.++|++|++. +.+... +       ..+.|.+  +..+|||+|..|.+.+.++...++.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y  133 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMSY  133 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEEE
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCCeEEEE
Confidence            467777899885    5778999999974 332211 1       3466665  4789999999999999987654443

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=94.91  E-value=0.15  Score=45.53  Aligned_cols=65  Identities=14%  Similarity=0.149  Sum_probs=46.9

Q ss_pred             cCCCcCCCeecC----CceEEEEEecEEE-EEEeeC-C-------eEEEecC--CcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          221 KAGSVEPAHHHT----FGHDLVVLQGKKS-VWNLTK-G-------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVlsG~l~-v~i~~~-~-------~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      .+|....+|.|.    +.+.++|++|++. +.+... +       ..+.|.+  +..+|||+|..|.+.+.++...++.+
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~vly~  153 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMYL  153 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEEE
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEEEEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCCEEEEEe
Confidence            467777899885    5778999999974 332211 1       3366665  47999999999999999976554443

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=94.83  E-value=0.1  Score=42.04  Aligned_cols=57  Identities=16%  Similarity=0.402  Sum_probs=44.0

Q ss_pred             eecCCceE--EEEEecEEEEEEeeC------CeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          229 HHHTFGHD--LVVLQGKKSVWNLTK------GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       229 H~H~~~e~--vyVlsG~l~v~i~~~------~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      |.=..+-+  +.|++|++++....+      .+...+.+|+..++||...|++...+|..+.|-|
T Consensus        32 HnTK~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sdD~~f~leF   96 (119)
T 3dl3_A           32 HNTAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQFNINF   96 (119)
T ss_dssp             BCCCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEEEEEE
T ss_pred             cCCCCcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECCCeEEEEEE
Confidence            43344555  889999999974321      2567899999999999999999977788887533

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=94.28  E-value=0.12  Score=48.75  Aligned_cols=58  Identities=22%  Similarity=0.207  Sum_probs=46.9

Q ss_pred             EcCCCcCCCeecCCceEEEEEecEEEEEEee--------------------------------------CCeEEEecCCc
Q 021654          220 FKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT--------------------------------------KGERFDLTVGD  261 (309)
Q Consensus       220 l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~--------------------------------------~~~~~~L~pGD  261 (309)
                      -.+|+.++.|..+..-++.++.|+-++.+.-                                      .....+|+|||
T Consensus       190 G~~gs~t~~H~D~~~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD  269 (349)
T 3d8c_A          190 GMEGNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGD  269 (349)
T ss_dssp             ECTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEECTTC
T ss_pred             ECCCCCccceECChhcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEECCCC
Confidence            3467778889887777788899998886521                                      12468999999


Q ss_pred             EEEECCCCeEEEEEcC
Q 021654          262 YLFTPAGDVHRVKYYE  277 (309)
Q Consensus       262 ~v~IP~g~~H~~~n~g  277 (309)
                      .+|||+|-.|.+.+.+
T Consensus       270 ~LyiP~gWwH~V~~l~  285 (349)
T 3d8c_A          270 VLYIPMYWWHHIESLL  285 (349)
T ss_dssp             EEEECTTCEEEEEECT
T ss_pred             EEEECCCCcEEEEEcC
Confidence            9999999999999997

>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}

Probab=93.84  E-value=0.11  Score=44.02  Aligned_cols=50  Identities=18%  Similarity=0.108  Sum_probs=36.3

Q ss_pred             HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654           28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG   81 (309)
Q Consensus        28 ~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G   81 (309)
                      ..|.+.|++.|++|++++.  ++...+..++.+....    ..+|.-|+--|+|.|
T Consensus        43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~----~~~DlVittGG~g~~   94 (178)
T 3iwt_A           43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSI----DEVDVIISTGGTGYS   94 (178)
T ss_dssp             HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTC----TTCCEEEEESCCSSS
T ss_pred             HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhc----CCCCEEEecCCcccC
Confidence            4688889999999999996  3455566666666655    567777766677665

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=93.57  E-value=0.17  Score=49.95  Aligned_cols=53  Identities=21%  Similarity=0.241  Sum_probs=42.7

Q ss_pred             CCCeecCCceEEEEEecEEEEEEeeC-----------------------CeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654          226 EPAHHHTFGHDLVVLQGKKSVWNLTK-----------------------GERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       226 ~p~H~H~~~e~vyVlsG~l~v~i~~~-----------------------~~~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      .++|+-+..-++.-+.|+-++.+...                       ...+.|+|||.+|||+|.+|...+.++
T Consensus       178 ~~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~~~  253 (489)
T 4diq_A          178 FAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDG  253 (489)
T ss_dssp             SCCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEEEEEBCSS
T ss_pred             ccCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCceEEEecCC
Confidence            47888888777888888888766321                       126899999999999999999999864

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=93.43  E-value=0.42  Score=41.82  Aligned_cols=61  Identities=10%  Similarity=0.038  Sum_probs=45.4

Q ss_pred             cCCCcCCCeecC----CceEEEEEecEEEEEEeeCC----------eEEEecC--CcEEEECCCCeEEEEEcCCceEE
Q 021654          221 KAGSVEPAHHHT----FGHDLVVLQGKKSVWNLTKG----------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVlsG~l~v~i~~~~----------~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      .+|....+|.|.    +...++|++|++.-.+ +|-          ....|.+  +..+|||+|..|.+.+.++...+
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV~-VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~a~~  128 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDVV-VDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATL  128 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEEE-ECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTTEEE
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEEE-EECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCCeEE
Confidence            467777899874    6777999999975432 221          2456765  67999999999999999875543

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=93.35  E-value=0.19  Score=46.29  Aligned_cols=62  Identities=19%  Similarity=0.074  Sum_probs=51.4

Q ss_pred             EEEcCCCcCCCeecCCceE-EEEE-ecEEEEEEeeCCeEEEecCCcEEEECCC--CeEEEEEcCCce
Q 021654          218 VRFKAGSVEPAHHHTFGHD-LVVL-QGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEETE  280 (309)
Q Consensus       218 ~~l~pG~~~p~H~H~~~e~-vyVl-sG~l~v~i~~~~~~~~L~pGD~v~IP~g--~~H~~~n~gd~~  280 (309)
                      +.+.++..+++|.|...|. .|++ +|.++-. +.-+..-.+.|||+-|+-+|  +.|+-.|..+.+
T Consensus        45 ~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~-DS~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~~~~  110 (290)
T 1j1l_A           45 FKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE-DFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEP  110 (290)
T ss_dssp             EEECTTCBEEEEEEBSEEEEEEECSSSCEEEE-ETTSCEEEECTTCEEEEECTTCEEEEEEECSSSC
T ss_pred             cccCCCCCCCCCCCCCeEEEEEECcceEEEEe-eCCCCceEECCCcEEEEeCCCCEEEEeEcCCCCC
Confidence            4577888899999999997 8999 9999985 55577899999999999875  579998875433

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=93.18  E-value=0.7  Score=39.34  Aligned_cols=74  Identities=16%  Similarity=0.238  Sum_probs=53.4

Q ss_pred             eEEEEEcCCCcCCCeecCCceEEEEEecEE-EEEEee-CCeE--EE----ecCCcE--EEECCCCeEEEEEc-CCceEEE
Q 021654          215 SAIVRFKAGSVEPAHHHTFGHDLVVLQGKK-SVWNLT-KGER--FD----LTVGDY--LFTPAGDVHRVKYY-EETEFFI  283 (309)
Q Consensus       215 ~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l-~v~i~~-~~~~--~~----L~pGD~--v~IP~g~~H~~~n~-gd~~~~i  283 (309)
                      ..++-+.+|..+.+|....+|..+...|.. ++.+.. +++.  ..    +..|+.  ++||+|..+..++. ++-.++-
T Consensus        51 ~IYfLL~~g~~S~~HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~~g~~~LV~  130 (170)
T 1yud_A           51 SIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMNQDGFSLVG  130 (170)
T ss_dssp             EEEEEEETTCCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTEESCEEECTTCEEEEEESSSSEEEEE
T ss_pred             EEEEEECCCCCCeeEEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccCceeEEEECCCCEEEEEECCCCcEEEE
Confidence            367889999988899988888888899974 665422 3433  33    556888  99999999999988 5444444


Q ss_pred             EEcCc
Q 021654          284 KWDGR  288 (309)
Q Consensus       284 ~~~~~  288 (309)
                      +.+.+
T Consensus       131 C~VaP  135 (170)
T 1yud_A          131 CMVSP  135 (170)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            44443

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=92.51  E-value=0.38  Score=41.95  Aligned_cols=79  Identities=13%  Similarity=-0.010  Sum_probs=56.4

Q ss_pred             EEEEEcCCCcCCCeecCCceE---EEEEe--c-EEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcCcc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHD---LVVLQ--G-KKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRW  289 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~---vyVls--G-~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~~~  289 (309)
                      .+..+.||+.+++|..+..-.   -+.|.  . ...+  .++++++..++|.++++.-..+|..+|.++..-++++.-  
T Consensus       105 ~fs~L~pG~~I~pH~g~~n~~lR~HL~L~~p~~~~~i--~V~~~~~~w~eGe~~~fDds~~Hev~N~~d~~RvvL~~D--  180 (197)
T 3rcq_A          105 KYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKI--RCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIVD--  180 (197)
T ss_dssp             EEEEECTTEEEEEECCSCTTEEEEEEEEECCSSSEEE--EETTEEECCCBTCEEEECTTSCEEEEECSSSCEEEEEEE--
T ss_pred             EEEEeCCCCCcCCeeCCCCCeEEEEEEEEeCCCCcEE--EECCEEEEeeCCcEEEEcCCeEEEEEECCCCCEEEEEEe--
Confidence            556899999999998875433   12222  2 3444  567999999999999999999999999997765554333  


Q ss_pred             ccccchhHHHH
Q 021654          290 DMFFDEDLEAA  300 (309)
Q Consensus       290 ~i~~~e~~~~~  300 (309)
                        +..+++-.+
T Consensus       181 --~~rPdl~~~  189 (197)
T 3rcq_A          181 --VWHPELTPQ  189 (197)
T ss_dssp             --EECTTSCHH
T ss_pred             --eeCCCCCHH
Confidence              335655433

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=92.04  E-value=0.79  Score=41.83  Aligned_cols=69  Identities=16%  Similarity=0.092  Sum_probs=52.3

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEe-cC---------CcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDL-TV---------GDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L-~p---------GD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      .++++++|.......-..+--++.|.|+.++.  ++++++.+ ..         .|++|+|.|..=.+.+.++.++.++.
T Consensus        32 ~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V~--~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~~v~s  109 (270)
T 2qjv_A           32 DVWQLXAGESITLPSDERERCLVLVAGLASVX--AADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLELAVCS  109 (270)
T ss_dssp             EEEEECTTCEEEECCSSEEEEEEEEESCEEEE--ETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEEEEEE
T ss_pred             EEEEecCCCEEEecCCCcEEEEEEecceEEEE--ECCEEEeccccccccccCCCCcEEEECCCCEEEEEecCCceEEEEe
Confidence            46788888876655444333388999999994  56888877 32         48999999998889988888877665


Q ss_pred             c
Q 021654          286 D  286 (309)
Q Consensus       286 ~  286 (309)
                      .
T Consensus       110 A  110 (270)
T 2qjv_A          110 A  110 (270)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=92.03  E-value=0.49  Score=46.27  Aligned_cols=64  Identities=23%  Similarity=0.199  Sum_probs=48.7

Q ss_pred             EEEcCCCcCCCeecCCce--EEEEEecEEEEEEee----------------------------CCeEEEecCCcEEEECC
Q 021654          218 VRFKAGSVEPAHHHTFGH--DLVVLQGKKSVWNLT----------------------------KGERFDLTVGDYLFTPA  267 (309)
Q Consensus       218 ~~l~pG~~~p~H~H~~~e--~vyVlsG~l~v~i~~----------------------------~~~~~~L~pGD~v~IP~  267 (309)
                      +--++|+.++.|......  +..+++|+-++.+.-                            ..-..++.|||.+|||+
T Consensus       236 ~mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIPs  315 (447)
T 3kv4_A          236 LMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPT  315 (447)
T ss_dssp             EEECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEECT
T ss_pred             EEeCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecCC
Confidence            344567777888777666  467888888876521                            12368999999999999


Q ss_pred             CCeEEEEEcCCceE
Q 021654          268 GDVHRVKYYEETEF  281 (309)
Q Consensus       268 g~~H~~~n~gd~~~  281 (309)
                      |-.|.+.|..++..
T Consensus       316 GWwH~V~nledsIa  329 (447)
T 3kv4_A          316 GWIHAVLTPVDCLA  329 (447)
T ss_dssp             TCEEEEEESSCEEE
T ss_pred             CCeEEEecCCCEEE
Confidence            99999999987654

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=92.02  E-value=0.41  Score=47.31  Aligned_cols=65  Identities=22%  Similarity=0.152  Sum_probs=50.0

Q ss_pred             EEEEcCCCcCCCeecCCce--EEEEEecEEEEEEeeC----------------------------CeEEEecCCcEEEEC
Q 021654          217 IVRFKAGSVEPAHHHTFGH--DLVVLQGKKSVWNLTK----------------------------GERFDLTVGDYLFTP  266 (309)
Q Consensus       217 ~~~l~pG~~~p~H~H~~~e--~vyVlsG~l~v~i~~~----------------------------~~~~~L~pGD~v~IP  266 (309)
                      ++--.+|+.++.|.++...  +..++.|+-++.+.-.                            .-..++.|||.+|||
T Consensus       270 ~~mG~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIP  349 (488)
T 3kv5_D          270 CLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVP  349 (488)
T ss_dssp             EEEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEEC
T ss_pred             EEEcCCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeC
Confidence            3344567888888887776  4688899888866311                            236789999999999


Q ss_pred             CCCeEEEEEcCCceE
Q 021654          267 AGDVHRVKYYEETEF  281 (309)
Q Consensus       267 ~g~~H~~~n~gd~~~  281 (309)
                      +|-.|.+.|..++..
T Consensus       350 sGWwH~V~nledsIa  364 (488)
T 3kv5_D          350 TGWIHAVLTSQDCMA  364 (488)
T ss_dssp             TTCEEEEEEEEEEEE
T ss_pred             CCceEEeeCCCCeEE
Confidence            999999999976554

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=91.75  E-value=0.45  Score=45.41  Aligned_cols=29  Identities=24%  Similarity=0.297  Sum_probs=25.5

Q ss_pred             eEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          253 ERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       253 ~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      -+.++.|||.+|||+|-.|.+.|..++..
T Consensus       217 ~ev~l~pGEtLfIPsGWwH~V~nledSIa  245 (371)
T 3k3o_A          217 YKCSVKQGQTLFIPTGWIHAVLTPVDCLA  245 (371)
T ss_dssp             EEEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred             EEEEECCCcEEEeCCCCeEEEecCCCeEE
Confidence            46899999999999999999999876554

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=91.61  E-value=0.78  Score=43.05  Aligned_cols=28  Identities=25%  Similarity=0.254  Sum_probs=25.2

Q ss_pred             EEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          254 RFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       254 ~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      ..+|.|||.+|||+|-.|.+.+.+++..
T Consensus       257 ~~~l~pGd~l~iP~gw~H~v~~~~~sis  284 (336)
T 3k2o_A          257 EILQKPGETVFVPGGWWHVVLNLDTTIA  284 (336)
T ss_dssp             EEEECTTCEEEECTTCEEEEEESSCEEE
T ss_pred             EEEECCCCEEEeCCCCcEEEecCCCeEE
Confidence            5789999999999999999999987554

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=90.86  E-value=0.84  Score=44.61  Aligned_cols=64  Identities=23%  Similarity=0.269  Sum_probs=47.5

Q ss_pred             EEEcCCCcCCCeecCCce--EEEEEecEEEEEEee----------------------------CCeEEEecCCcEEEECC
Q 021654          218 VRFKAGSVEPAHHHTFGH--DLVVLQGKKSVWNLT----------------------------KGERFDLTVGDYLFTPA  267 (309)
Q Consensus       218 ~~l~pG~~~p~H~H~~~e--~vyVlsG~l~v~i~~----------------------------~~~~~~L~pGD~v~IP~  267 (309)
                      +--++|+.++.|..+...  +..+++|+-++.+.-                            .....++.|||.+|||+
T Consensus       201 ~mGp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIPs  280 (451)
T 2yu1_A          201 LMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPS  280 (451)
T ss_dssp             EEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEECT
T ss_pred             EEccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeCC
Confidence            334567777888777553  467888888775420                            23468899999999999


Q ss_pred             CCeEEEEEcCCceE
Q 021654          268 GDVHRVKYYEETEF  281 (309)
Q Consensus       268 g~~H~~~n~gd~~~  281 (309)
                      |=.|.+.|..++..
T Consensus       281 GWwH~V~nledsIa  294 (451)
T 2yu1_A          281 GWIHAVYTPTDTLV  294 (451)
T ss_dssp             TCEEEEECSSCEEE
T ss_pred             CceEEEecCCCeEE
Confidence            99999999987654

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=90.57  E-value=0.99  Score=34.72  Aligned_cols=50  Identities=10%  Similarity=0.191  Sum_probs=40.9

Q ss_pred             CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          233 FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       233 ~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      ..|..-|++|.+++.+...++.....+|+.+.+|++..-.++....+..+
T Consensus        41 ~~E~M~vvsG~~~V~lpg~~ew~~~~aGesF~Vpans~F~l~v~~~~~Yl   90 (94)
T 2oyz_A           41 APERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVKDATAYL   90 (94)
T ss_dssp             SCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEESSCEEEE
T ss_pred             CeEEEEEEEeEEEEEcCCCCcCEEECCCCEEEECCCCEEEEEEcccEeEE
Confidence            56779999999999765344678999999999999999998887665543

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=90.19  E-value=0.73  Score=44.34  Aligned_cols=61  Identities=25%  Similarity=0.217  Sum_probs=42.7

Q ss_pred             cCCCcCCCeecCCce--EEEEEecEEEEEEee----------------------------CCeEEEecCCcEEEECCCCe
Q 021654          221 KAGSVEPAHHHTFGH--DLVVLQGKKSVWNLT----------------------------KGERFDLTVGDYLFTPAGDV  270 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e--~vyVlsG~l~v~i~~----------------------------~~~~~~L~pGD~v~IP~g~~  270 (309)
                      ++|+.++.|..+...  +..++.|+-++.+.-                            ..-...+.|||.+|||+|-.
T Consensus       183 p~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfIPsGW~  262 (397)
T 3kv9_A          183 VQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWI  262 (397)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEeCCCCe
Confidence            445666666665554  356666666665421                            12457899999999999999


Q ss_pred             EEEEEcCCceE
Q 021654          271 HRVKYYEETEF  281 (309)
Q Consensus       271 H~~~n~gd~~~  281 (309)
                      |.+.|..++..
T Consensus       263 H~V~nledSIa  273 (397)
T 3kv9_A          263 HAVLTSQDCMA  273 (397)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEccCCcCeEE
Confidence            99999976544

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=90.06  E-value=0.76  Score=44.13  Aligned_cols=61  Identities=21%  Similarity=0.177  Sum_probs=43.0

Q ss_pred             cCCCcCCCeecCCce--EEEEEecEEEEEEe----------------------------eCCeEEEecCCcEEEECCCCe
Q 021654          221 KAGSVEPAHHHTFGH--DLVVLQGKKSVWNL----------------------------TKGERFDLTVGDYLFTPAGDV  270 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e--~vyVlsG~l~v~i~----------------------------~~~~~~~L~pGD~v~IP~g~~  270 (309)
                      ++|+.++.|......  +..+++|+-.+.+.                            ...-...+.|||.+|||+|-.
T Consensus       182 p~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIPsGWw  261 (392)
T 3pua_A          182 VKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGWI  261 (392)
T ss_dssp             CTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEECTTCE
T ss_pred             CCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeCCCce
Confidence            445666666655544  35667776666542                            012468999999999999999


Q ss_pred             EEEEEcCCceE
Q 021654          271 HRVKYYEETEF  281 (309)
Q Consensus       271 H~~~n~gd~~~  281 (309)
                      |.+.|..++..
T Consensus       262 H~V~nledSIa  272 (392)
T 3pua_A          262 YATLTPVDCLA  272 (392)
T ss_dssp             EEEEEEEEEEE
T ss_pred             EEEecCCCEEE
Confidence            99999977654

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=89.39  E-value=1.7  Score=34.44  Aligned_cols=64  Identities=11%  Similarity=0.197  Sum_probs=46.7

Q ss_pred             EEEcCCCcCCCeec-CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          218 VRFKAGSVEPAHHH-TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       218 ~~l~pG~~~p~H~H-~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      =.+.||. -|.+.. ...|..-|++|.+++.+-...+.....+|+.+.+|++..-.++.......+
T Consensus        42 GVm~PGe-~~YtF~T~~~E~MevvsG~l~V~Lpg~~eW~~~~aGesF~VpanssF~lkv~~~~~Y~  106 (111)
T 3hqx_A           42 GVILPTE-QPLTFETHVPERMEIISGECRVKIADSTESELFRAGQSFYVPGNSLFKIETDEVLDYV  106 (111)
T ss_dssp             EEECCCS-SCEEEECSSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECTTCEEEEECSSCEEEE
T ss_pred             EEEeccc-cceEEcCCCcEEEEEEEeEEEEEcCCcccCEEeCCCCEEEECCCCcEEEEECcceeEE
Confidence            3455663 123332 245679999999999775445678899999999999999999887655554

>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A

Probab=88.73  E-value=0.56  Score=39.27  Aligned_cols=65  Identities=17%  Similarity=0.088  Sum_probs=42.9

Q ss_pred             CCcEEEEEeCcccHHHH---------HHHHHHHHhC-----CCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEE
Q 021654           11 HPLKIIAGADSFGAELK---------DALVSHLRSL-----NIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLV   74 (309)
Q Consensus        11 ~~mki~i~~D~~g~~lk---------~~l~~~l~~~-----g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~   74 (309)
                      +++||+|-+  .|-++-         ..|.+.|++.     |++|.+++.  ++...+..++.+.+..    ..+|.-|+
T Consensus         4 ~~~rv~Iis--tGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~----~~~DlVit   77 (167)
T 1uuy_A            4 PEYKVAILT--VSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDV----DEMDLILT   77 (167)
T ss_dssp             CSEEEEEEE--ECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHT----SCCSEEEE
T ss_pred             CCcEEEEEE--ECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhc----CCCCEEEE
Confidence            457777765  233321         2455566666     999999985  4566777777777653    35787777


Q ss_pred             EecCchh
Q 021654           75 ACGTGVG   81 (309)
Q Consensus        75 ~CgtG~G   81 (309)
                      --|+|.|
T Consensus        78 tGG~g~g   84 (167)
T 1uuy_A           78 LGGTGFT   84 (167)
T ss_dssp             ESCCSSS
T ss_pred             CCCCCCC
Confidence            7788776

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=88.58  E-value=1.2  Score=40.91  Aligned_cols=71  Identities=13%  Similarity=0.126  Sum_probs=48.6

Q ss_pred             CCeEEEEEcCCCcCCCee-cCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeE-EEEE---cCCceEEEEE
Q 021654          213 PTSAIVRFKAGSVEPAHH-HTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVH-RVKY---YEETEFFIKW  285 (309)
Q Consensus       213 ~~~~~~~l~pG~~~p~H~-H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H-~~~n---~gd~~~~i~~  285 (309)
                      |....+++++|....... =...|. ++.|.|..++.  +++++|.|.+.|++|+|.|..- .+..   .++..+.++.
T Consensus        57 p~~~~l~L~~~~~~~~~~fl~~rE~~iV~lgG~~~V~--vdg~~f~lg~~dalYVp~G~~~v~~as~d~~~~a~fav~s  133 (289)
T 1ywk_A           57 PTTEELEIILDKELGVDYFLERRELGVINIGGPGFIE--IDGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISC  133 (289)
T ss_dssp             CSSSCEECCCSGGGTSSSTTTTEEEEEEECSSCEEEE--ETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEE
T ss_pred             ECCceEEcCCCceecccccCCCcEEEEEEccCeEEEE--ECCEEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEc
Confidence            334556777775554442 244555 88899999994  5699999999999999999874 4443   2335665543

>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B

Probab=88.57  E-value=0.99  Score=38.01  Aligned_cols=125  Identities=22%  Similarity=0.261  Sum_probs=71.5

Q ss_pred             CCCcEEEEE--eCcccHH---HHHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhh
Q 021654           10 PHPLKIIAG--ADSFGAE---LKDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV   82 (309)
Q Consensus        10 ~~~mki~i~--~D~~g~~---lk~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~   82 (309)
                      .++||++|-  +|-.|.-   =-..|.+.|++.|++|.+.+.  ++...+...+.+++.+    +.+|.-|+--|+|.|-
T Consensus         8 ~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~----~~~DlVittGG~g~~~   83 (172)
T 1mkz_A            8 FIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIAS----DDVQVVLITGGTGLTE   83 (172)
T ss_dssp             CCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHS----SSCCEEEEESCCSSST
T ss_pred             CCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhc----CCCCEEEeCCCCCCCC
Confidence            455776554  4555422   114677888899999999885  4566777777777664    4578888878887762


Q ss_pred             -----hhhhc----CCCceEE---EEeCCH--HHHHHhHh----hcCceEeEeccccCCHHHHHH-HHHHHHcCC
Q 021654           83 -----AIFAN----KNPGVFA---TTCLTP--ADALNTRS----INNCNVLAVSGMSTSKESAVE-ILDTWLKTP  138 (309)
Q Consensus        83 -----~iaaN----K~~gira---a~~~~~--~~A~~~r~----hN~aNvl~lg~~~~~~~~a~~-i~~~~l~~~  138 (309)
                           ...+.    +++|..-   .+...+  ..+.++|.    .++..|++|++--.......+ ++.-+|..-
T Consensus        84 ~D~t~ea~~~~~~~~l~g~~~~~~~i~~~p~G~~~~~a~~~~G~~~~~~v~~LPG~P~~~~~~~~~~v~p~L~~~  158 (172)
T 1mkz_A           84 GDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQLDAR  158 (172)
T ss_dssp             TCCHHHHHGGGCSEECHHHHHHHHHHHHHHHGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHHCTT
T ss_pred             CCCHHHHHHHHhcccCCccHHHHHHHhhcccCcceecccccceeECCEEEEECCCCHHHHHHHHHHHHHHHHhhh
Confidence                 11111    1112100   000000  11233331    578899999998666555544 456666543

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}

Probab=87.38  E-value=0.9  Score=43.46  Aligned_cols=30  Identities=23%  Similarity=0.352  Sum_probs=25.8

Q ss_pred             CeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          252 GERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       252 ~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      .-++.-.+||.|+||+|.+|+++|..++.-
T Consensus       292 ~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i~  321 (392)
T 2ypd_A          292 TCTLIQFLGDAIVLPAGALHQVQNFHSCIQ  321 (392)
T ss_dssp             CEEEEEETTCEEEECTTCEEEEEESSEEEE
T ss_pred             eEEEEEcCCCEEEecCCCHHHHhcccchhh
Confidence            456788899999999999999999986553

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=87.22  E-value=1.5  Score=42.92  Aligned_cols=52  Identities=15%  Similarity=0.128  Sum_probs=41.0

Q ss_pred             cCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          231 HTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       231 H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ...++++++-+|++.+  .+.=....+.|||+++||.|+.+++.-.+....+|+
T Consensus       176 aDGD~Livpq~G~l~i--~TEfG~L~v~pgei~VIPRGi~frv~l~~p~Rgyi~  227 (471)
T 1eyb_A          176 SDGDFLIVPQKGNLLI--YTEFGKMLVQPNEICVIQRGMRFSIDVFEETRGYIL  227 (471)
T ss_dssp             SSEEEEEEEEESCEEE--EETTEEEEECTTEEEEECTTCCEEEECSSSEEEEEE
T ss_pred             CCCCEEEEEEeCCEEE--EEecccEEeccCCEEEECCccEEEEeeCCCceEEEE
Confidence            3445559999999999  455678999999999999999999987664444443

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=86.88  E-value=2.1  Score=39.03  Aligned_cols=77  Identities=17%  Similarity=0.202  Sum_probs=49.9

Q ss_pred             EEcCCCc---CCCeecCCc---------eEEE--EEe--cEEEEEEe----eCCeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654          219 RFKAGSV---EPAHHHTFG---------HDLV--VLQ--GKKSVWNL----TKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       219 ~l~pG~~---~p~H~H~~~---------e~vy--Vls--G~l~v~i~----~~~~~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      ++.||+.   .|+|.|+..         |..|  +-.  |.+--.+.    ..++++.+.-||.+.+|+|- |..-....
T Consensus       158 v~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q~vyt~d~~~de~~~V~~~d~VlvP~Gy-Hp~~a~pG  236 (270)
T 2qjv_A          158 VYTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNRDVVXVPXGY-HPVATIAG  236 (270)
T ss_dssp             EEECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEEEEECTTSSSEEEEEEETTCEEEESSSB-CCEEECTT
T ss_pred             EEcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEEEEeCCCCCCceEEEEECCCEEecCCCc-CCCcCCCC
Confidence            4667643   499999974         5543  332  33332221    14678999999999999999 99776656


Q ss_pred             ceEEEEEc-----Cccccccchh
Q 021654          279 TEFFIKWD-----GRWDMFFDED  296 (309)
Q Consensus       279 ~~~~i~~~-----~~~~i~~~e~  296 (309)
                      ..++++|.     ..|-+..+|+
T Consensus       237 y~~YylwvMaG~~r~~~~~~dP~  259 (270)
T 2qjv_A          237 YDNYYLNVMAGPLRXWRFTWEEN  259 (270)
T ss_dssp             CEEEEEEEEECSSCCCCCEECGG
T ss_pred             cccEEEEEEECCCccccccCCCc
Confidence            66666664     3455555554

>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1

Probab=86.69  E-value=0.97  Score=37.89  Aligned_cols=69  Identities=22%  Similarity=0.173  Sum_probs=44.5

Q ss_pred             CCCCcEEEEEe--CcccHH---HHHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654            9 APHPLKIIAGA--DSFGAE---LKDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG   81 (309)
Q Consensus         9 ~~~~mki~i~~--D~~g~~---lk~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G   81 (309)
                      ..++||++|-+  |-.|.-   =-..|.+.|++.|++|.+.+.  ++...+...+.+.+..    ..+|.-|+--|+|.|
T Consensus        10 v~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~----~~~DlVittGG~g~g   85 (169)
T 1y5e_A           10 APKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHK----EDVDVVLTNGGTGIT   85 (169)
T ss_dssp             --CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTC----TTCSEEEEECCCSSS
T ss_pred             cccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhc----CCCCEEEEcCCCCCC
Confidence            34567866654  443310   113567778888999999885  4566677777777653    357877777778776

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=86.41  E-value=2.7  Score=38.92  Aligned_cols=36  Identities=19%  Similarity=0.109  Sum_probs=31.1

Q ss_pred             CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCC
Q 021654          232 TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGD  269 (309)
Q Consensus       232 ~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~  269 (309)
                      .....+.|++|++++.  .+++.+.|++||+++||++.
T Consensus       268 ~~~~il~v~~G~~~l~--~~~~~~~l~~G~~~~vpa~~  303 (319)
T 1qwr_A          268 ESFLICSVIEGSGLLK--YEDKTCPLKKGDHFILPAQM  303 (319)
T ss_dssp             SSCEEEEEEEEEEEEE--ETTEEEEEETTCEEEECTTC
T ss_pred             CccEEEEEEcCeEEEE--ECCEEEEEcCCcEEEEeCCC
Confidence            4566799999999994  35788999999999999987

>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*

Probab=86.01  E-value=3.4  Score=33.22  Aligned_cols=110  Identities=8%  Similarity=0.088  Sum_probs=57.4

Q ss_pred             cEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecC-chhhhhhhcC
Q 021654           13 LKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGT-GVGVAIFANK   88 (309)
Q Consensus        13 mki~i~~---D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~Cgt-G~G~~iaaNK   88 (309)
                      -||++++   |.--.- |+.+...|+..||+|+|+|.+--++   .+.+.+.+    ...+ .|.+|.+ +..+..+   
T Consensus         4 ~~vvla~~~~d~HdiG-~~~v~~~l~~~G~~Vi~lG~~~p~e---~~v~~a~~----~~~d-~v~lS~~~~~~~~~~---   71 (137)
T 1ccw_A            4 KTIVLGVIGSDCHAVG-NKILDHAFTNAGFNVVNIGVLSPQE---LFIKAAIE----TKAD-AILVSSLYGQGEIDC---   71 (137)
T ss_dssp             CEEEEEEETTCCCCHH-HHHHHHHHHHTTCEEEEEEEEECHH---HHHHHHHH----HTCS-EEEEEECSSTHHHHH---
T ss_pred             CEEEEEeCCCchhHHH-HHHHHHHHHHCCCEEEECCCCCCHH---HHHHHHHh----cCCC-EEEEEecCcCcHHHH---
Confidence            3677775   432333 4578888999999999999843332   23333332    2233 4555543 3333211   


Q ss_pred             CCceEEEEeCCHHHHHHhHh--hcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCC
Q 021654           89 NPGVFATTCLTPADALNTRS--INNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPA  145 (309)
Q Consensus        89 ~~giraa~~~~~~~A~~~r~--hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~  145 (309)
                               .+  ..+..|+  .++.-|++=|..++.++...+.-+.+-...++.-++.
T Consensus        72 ---------~~--~i~~l~~~g~~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~  119 (137)
T 1ccw_A           72 ---------KG--LRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAP  119 (137)
T ss_dssp             ---------TT--HHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCT
T ss_pred             ---------HH--HHHHHHhcCCCCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECC
Confidence                     11  2223333  2355565544446665544444555656666655533

>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A

Probab=85.63  E-value=1.2  Score=37.78  Aligned_cols=48  Identities=17%  Similarity=0.171  Sum_probs=34.8

Q ss_pred             HHHHHHH---hCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654           29 ALVSHLR---SLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG   81 (309)
Q Consensus        29 ~l~~~l~---~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G   81 (309)
                      .|.+.|+   +.|++| +++.  ++...+...+.+.+.+    ..+|.-|+--|+|.|
T Consensus        29 ~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~----~~~DlVittGG~g~g   81 (178)
T 2pbq_A           29 AIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELADE----KGCSLILTTGGTGPA   81 (178)
T ss_dssp             HHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHHT----SCCSEEEEESCCSSS
T ss_pred             HHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHhc----CCCCEEEECCCCCCC
Confidence            5566566   899999 8884  4566677777777653    357888888888877

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=84.76  E-value=2.4  Score=42.11  Aligned_cols=28  Identities=29%  Similarity=0.355  Sum_probs=25.0

Q ss_pred             EEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          254 RFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       254 ~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      ..++.||+.+|||+|-.|.+.|+.++.+
T Consensus       367 ~v~l~pGEtlfIPsGW~HaV~tleDSIa  394 (528)
T 3pur_A          367 RVVIKEGQTLLIPAGWIHAVLTPVDSLV  394 (528)
T ss_dssp             EEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred             EEEECCCCEEEecCCceEEEecCCCeEE
Confidence            5789999999999999999999977644

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=84.28  E-value=4.6  Score=36.32  Aligned_cols=65  Identities=20%  Similarity=0.136  Sum_probs=44.8

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee-CCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      ..+++++|...........-.+||++|++++  +. +++...|.+||.+.+..+..=.+.+.++..++
T Consensus       185 ~~~~L~~g~~~~~~~~~~~~~l~v~~G~v~v--~g~~~~~~~l~~gd~~~l~~~~~l~l~a~~~a~~L  250 (256)
T 2vec_A          185 HHIVLDKGESANFQLHGPRAYLQSIHGKFHA--LTHHEEKAALTCGDGAFIRDEANITLVADSPLRAL  250 (256)
T ss_dssp             EEEEECTTCEEEEECSSSEEEEEEEESCEEE--EETTEEEEEECTTCEEEEESCSEEEEEESSSEEEE
T ss_pred             EEEEECCCCEEEEecCCCeEEEEEEECEEEE--CCccccceEECCCCEEEECCCCeEEEEeCCCCEEE
Confidence            4467888877644433323669999999998  31 12346799999999988776677776555554

>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}

Probab=84.08  E-value=0.23  Score=38.79  Aligned_cols=48  Identities=15%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             eEEEEecCchhhhhhhcCCCc----------eEEEEeCCHHHHHHhHhhcCceEeEeccccCC
Q 021654           71 RGLVACGTGVGVAIFANKNPG----------VFATTCLTPADALNTRSINNCNVLAVSGMSTS  123 (309)
Q Consensus        71 ~gi~~CgtG~G~~iaaNK~~g----------iraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~  123 (309)
                      +-+++||+|+|.||.++|++-          |.+.-..+...     ...++.++.++..+-.
T Consensus         6 kIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~-----~~~~~D~Ii~t~~l~~   63 (109)
T 2l2q_A            6 NILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSE-----VVDRFDVVLLAPQSRF   63 (109)
T ss_dssp             EEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHH-----HTTTCSEEEECSCCSS
T ss_pred             EEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHh-----hcCCCCEEEECCccHH
Confidence            579999999999999998864          22222222221     2467788877776643

>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A

Probab=83.78  E-value=1.5  Score=36.55  Aligned_cols=50  Identities=16%  Similarity=0.052  Sum_probs=37.6

Q ss_pred             HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchh
Q 021654           28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVG   81 (309)
Q Consensus        28 ~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G   81 (309)
                      ..|.+.|++.|++|.+++.  ++...+...+.+.+..    ..+|.-|+--|||.|
T Consensus        24 ~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~----~~~DlVittGG~g~g   75 (164)
T 2is8_A           24 LAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADR----EGLDLILTNGGTGLA   75 (164)
T ss_dssp             HHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHT----SCCSEEEEESCCSSS
T ss_pred             HHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhc----CCCCEEEEcCCCCCC
Confidence            3577778899999999885  4566677777777663    357888888888876

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=83.67  E-value=3.4  Score=34.37  Aligned_cols=119  Identities=11%  Similarity=0.042  Sum_probs=67.2

Q ss_pred             CCcEEEEEeCccc----HHHHHHHHHHHHhCCCcEEEe--cC--------CCCcc---hhHHHHHHhhcCCCCCCCceEE
Q 021654           11 HPLKIIAGADSFG----AELKDALVSHLRSLNIDVEDL--GT--------SDYYS---IGAEVGRRVSSSDSSDTTTRGL   73 (309)
Q Consensus        11 ~~mki~i~~D~~g----~~lk~~l~~~l~~~g~ev~d~--G~--------~~y~~---~a~~va~~v~~~~~~~~~~~gi   73 (309)
                      ++|||.+++=-.|    ..+-+.|++.|++.| +|.+.  +.        ..+..   +...=-+.|.+      +|-.|
T Consensus         1 m~mkIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~------aD~vv   73 (152)
T 4fyk_A            1 MRRSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQ------ADVVV   73 (152)
T ss_dssp             --CEEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHH------CSEEE
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHH------CCEEE
Confidence            4689999976555    357789999999999 77531  21        10111   22222333443      56777


Q ss_pred             EE-----ecCchhhhhhhcCCCceEEEEeCC---HHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCC
Q 021654           74 VA-----CGTGVGVAIFANKNPGVFATTCLT---PADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPF  139 (309)
Q Consensus        74 ~~-----CgtG~G~~iaaNK~~giraa~~~~---~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f  139 (309)
                      .+     +||+.=+..|.-+=+=|.+-...+   ..+|.+.-.++..|+-+.--.-   +...+|++.||.+..
T Consensus        74 A~l~~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~---~el~~il~~f~~~~~  144 (152)
T 4fyk_A           74 AEVTQPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE---GEVETMLDRYFEAYL  144 (152)
T ss_dssp             EECSSCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT---TCHHHHHHHHHC---
T ss_pred             EeCCCCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH---HHHHHHHHHHHHhhH
Confidence            76     455533333333333454444322   2355555556558888876663   888999999998754

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=83.25  E-value=0.73  Score=42.50  Aligned_cols=22  Identities=23%  Similarity=0.211  Sum_probs=19.7

Q ss_pred             eEEEecCCcEEEECCCCeEEEE
Q 021654          253 ERFDLTVGDYLFTPAGDVHRVK  274 (309)
Q Consensus       253 ~~~~L~pGD~v~IP~g~~H~~~  274 (309)
                      ..+.|+|||++|+|+|++|.+-
T Consensus       158 n~v~l~pGd~~~ipaGt~HA~~  179 (300)
T 1zx5_A          158 NTFETTPYDTFVIRPGIPHAGE  179 (300)
T ss_dssp             EEEECCTTCEEEECTTCCEEEE
T ss_pred             ceeECCCCCEEEcCCCCceEcC
Confidence            4688999999999999999874

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=82.99  E-value=0.71  Score=42.57  Aligned_cols=69  Identities=13%  Similarity=0.067  Sum_probs=44.1

Q ss_pred             EEEcCCCcCCCeecCCceEEEEEecEEEE----------EEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce-EEEEEc
Q 021654          218 VRFKAGSVEPAHHHTFGHDLVVLQGKKSV----------WNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE-FFIKWD  286 (309)
Q Consensus       218 ~~l~pG~~~p~H~H~~~e~vyVlsG~l~v----------~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~-~~i~~~  286 (309)
                      +++.||+.+.+|.-+.. .....+|..++          .+.++++.+.+++|++.++....+|++.|.++.. +.++++
T Consensus        96 lrL~PG~~I~~HrD~~~-l~~~~~~~~RlHIPL~Tnp~~~f~vdg~~~~m~~GE~w~~d~~~~H~v~N~g~~~RIhLv~D  174 (290)
T 1e5r_A           96 SRNLKNAIVIPHRDFVE-LDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQSLCVD  174 (290)
T ss_dssp             EEEEESEEEEEECCC---------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSCCCEEEEE
T ss_pred             EEeCCCCEeeCccCccc-cccccCCceEEEeeEecCCCcEEEECCEEEecCCCCEEEEcCCCeeEEEcCCCCCeEEEEEE
Confidence            37788888777755411 01011222222          2246799999999999999999999999998643 444443


Q ss_pred             C
Q 021654          287 G  287 (309)
Q Consensus       287 ~  287 (309)
                      .
T Consensus       175 ~  175 (290)
T 1e5r_A          175 F  175 (290)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=82.52  E-value=6.2  Score=35.09  Aligned_cols=63  Identities=10%  Similarity=-0.001  Sum_probs=44.5

Q ss_pred             EEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..+++++|........+ ..-++||++|++++  +  ++  .|.+||.+.+..+..=.+.+.++..+++.
T Consensus       163 ~~~~l~~g~~~~~~~~~~~~~~~~v~~G~v~v--~--g~--~l~~gd~~~~~~~~~l~l~a~~~a~~Ll~  226 (242)
T 1tq5_A          163 YRWALLKDEQSVHQIAAERRVWIQVVKGNVTI--N--GV--KASTSDGLAIWDEQAISIHADSDSEVLLF  226 (242)
T ss_dssp             EEEEECTTCEEEECCCTTCEEEEEEEESEEEE--T--TE--EEETTCEEEEESCSCEEEEESSSEEEEEE
T ss_pred             EEEEECCCCEEEeecCCCcEEEEEEccCcEEE--C--CE--EeCCCCEEEECCCCeEEEEeCCCCEEEEE
Confidence            45678888776333322 34459999999998  3  43  69999999998877667777666655443

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=82.38  E-value=3.7  Score=37.31  Aligned_cols=63  Identities=14%  Similarity=0.169  Sum_probs=43.6

Q ss_pred             EEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECC-C----CeEEEEEcCCceEE
Q 021654          216 AIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPA-G----DVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~-g----~~H~~~n~gd~~~~  282 (309)
                      ..+++++|........+ ..-++||++|.+++  +  +....|.+||.+++.. +    ..-.+.+.++..++
T Consensus       170 ~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v--~--g~~~~l~~~d~~~~~~~~~~~~~~l~l~a~~~a~~L  238 (277)
T 2p17_A          170 VEMIVEPGTTVVQDLPGHYNGFLYILEGSGVF--G--ADNIEGKAGQALFFSRHNRGEETELNVTAREKLRLL  238 (277)
T ss_dssp             EEEEECTTCEEEEEEETTCEEEEEEEESEEEE--T--TTTEEEETTEEEEECCCCTTCEEEEEEEESSSEEEE
T ss_pred             EEEEECCCCEEEeccCCCCEEEEEEEeCeEEE--C--CCceEeCCCcEEEEcCCCCCccceEEEEeCCCcEEE
Confidence            45688898877544432 34569999999988  4  4224699999999986 6    44566776665544

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}

Probab=82.28  E-value=3.3  Score=32.49  Aligned_cols=47  Identities=21%  Similarity=0.277  Sum_probs=38.0

Q ss_pred             CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCc
Q 021654          233 FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       233 ~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~  279 (309)
                      ..|..-|++|.+++.+-...+.....+|+.+.+|++..-.++....+
T Consensus        54 ~~E~MevvsG~l~V~LpG~~eW~~~~aGesF~VpanssF~lkv~~~t  100 (106)
T 3eo6_A           54 VAETIRVLSGMAYYHAEGANDVQELHAGDSMVIPANQSYRLEVMEPL  100 (106)
T ss_dssp             SCEEEEEEEEEEEEECTTCSSCEEEETTCEEEECSSSCEEEEEEEEE
T ss_pred             CcEEEEEEEeEEEEECCCCccCEEECCCCEEEECCCCcEEEEECceE
Confidence            45678999999999765334678999999999999999888876433

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=82.01  E-value=0.87  Score=42.33  Aligned_cols=21  Identities=29%  Similarity=0.849  Sum_probs=19.6

Q ss_pred             eEEEecCCcEEEECCCCeEEE
Q 021654          253 ERFDLTVGDYLFTPAGDVHRV  273 (309)
Q Consensus       253 ~~~~L~pGD~v~IP~g~~H~~  273 (309)
                      ..+.|+|||++|+|+|++|.+
T Consensus       158 n~v~l~pGd~~~ipaGt~HA~  178 (319)
T 1qwr_A          158 RRIKIKPGDFYYVPSGTLHAL  178 (319)
T ss_dssp             EEEECCTTCEEEECTTCCEEE
T ss_pred             eEEEcCCCCEEEcCCCCceEe
Confidence            679999999999999999985

>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D

Probab=81.55  E-value=0.43  Score=37.22  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=18.2

Q ss_pred             eEEEEecCchhhhhhhcCCC
Q 021654           71 RGLVACGTGVGVAIFANKNP   90 (309)
Q Consensus        71 ~gi~~CgtG~G~~iaaNK~~   90 (309)
                      +-+++||+|++.|+.++|++
T Consensus         5 kIll~Cg~G~sTS~l~~k~~   24 (106)
T 1e2b_A            5 HIYLFSSAGMSTSLLVSKMR   24 (106)
T ss_dssp             EEEEECSSSTTTHHHHHHHH
T ss_pred             EEEEECCCchhHHHHHHHHH
Confidence            57899999999999999875

>1pmi_A PMI, phosphomannose isomerase; aldose-ketose isomerase; 1.70A {Candida albicans} SCOP: b.82.1.3

Probab=80.05  E-value=6.4  Score=38.18  Aligned_cols=45  Identities=13%  Similarity=0.165  Sum_probs=34.7

Q ss_pred             ecCCceEEEEEecEEEEEEeeCCe-E--EEecCCcEEEECCCCeEEEEEc
Q 021654          230 HHTFGHDLVVLQGKKSVWNLTKGE-R--FDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       230 ~H~~~e~vyVlsG~l~v~i~~~~~-~--~~L~pGD~v~IP~g~~H~~~n~  276 (309)
                      .+.....++|++|++++..  ++. .  ..|++|+++|||++..-.+.+.
T Consensus       376 ~~~~~~illv~~G~g~i~~--~~~~~~~~~l~~G~~~fvpa~~~~~i~g~  423 (440)
T 1pmi_A          376 GLNGPSIVIATNGKGTIQI--TGDDSTKQKIDTGYVFFVAPGSSIELTAD  423 (440)
T ss_dssp             CCSSCEEEEEEESEEEEEE--TTCGGGCEEEETTCEEEECTTCCEEEEEC
T ss_pred             cCCCcEEEEEEeCeEEEEe--CCcccceEEeccCCEEEEeCCCcEEEEEe
Confidence            3456778999999999953  333 3  7999999999999966566654

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=80.01  E-value=3  Score=39.91  Aligned_cols=38  Identities=18%  Similarity=0.270  Sum_probs=31.8

Q ss_pred             ecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCC
Q 021654          230 HHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGD  269 (309)
Q Consensus       230 ~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~  269 (309)
                      .+.....+.|++|++++.  .++++..|++|+++|||++.
T Consensus       339 ~~~~~~il~v~~G~~~l~--~~~~~~~l~~G~~~fvpa~~  376 (394)
T 2wfp_A          339 GQHSAAILFCVEGEAVLR--KDEQRLVLKPGESAFIGADE  376 (394)
T ss_dssp             CCSSCEEEEEEEEEEEEE--ETTEEEEECTTCEEEECGGG
T ss_pred             cCCCcEEEEEEeceEEEE--ECCeEEEEccCcEEEEeCCC
Confidence            455667899999999984  45678999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d1o1xa_	145	c.121.1.1 (A:) Putative sugar-phosphate isomerase	4e-27
d2vvpa1	156	c.121.1.1 (A:3-158) Alternate ribose 5-phosphate i	6e-27
d1nn4a_	159	c.121.1.1 (A:) Alternate ribose 5-phosphate isomer	7e-27
d2o1qa1	144	b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA	2e-15
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	1e-07
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	1e-05
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	2e-06
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	2e-05
d3bu7a1	355	b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Si	2e-06
d3bu7a1	355	b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Si	5e-05
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	2e-06
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	6e-05
d1yhfa1	112	b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {S	1e-05
d1sefa_	250	b.82.1.11 (A:) Hypothetical protein EF2996 {Entero	5e-05
d1sefa_	250	b.82.1.11 (A:) Hypothetical protein EF2996 {Entero	0.003
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	7e-05
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	5e-04
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	1e-04
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	4e-04
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	2e-04
d1sfna_	245	b.82.1.11 (A:) Hypothetical protein DR1152 {Deinoc	3e-04
d1sfna_	245	b.82.1.11 (A:) Hypothetical protein DR1152 {Deinoc	6e-04
d1rc6a_	253	b.82.1.11 (A:) Hypothetical protein YlbA {Escheric	5e-04
d1rc6a_	253	b.82.1.11 (A:) Hypothetical protein YlbA {Escheric	0.001
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	7e-04
d2f4pa1	134	b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Th	0.001
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	0.002
d1vj2a_	114	b.82.1.10 (A:) Hypothetical protein TM1459 {Thermo	0.003
d1lr5a_	160	b.82.1.2 (A:) Auxin binding protein {Maize (Zea ma	0.004

>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Putative sugar-phosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

 Score =  101 bits (253), Expect = 4e-27
 Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 9/134 (6%)

Query: 11  HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDS 65
           H +KI   +D    ELK+ + ++L    I+VED GT      DY     +V + + S+++
Sbjct: 1   HHVKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEA 60

Query: 66  SDTTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKE 125
                 G++ CGTG+G++I AN+  G+ A  CL P  A   RS NN N+L + G     E
Sbjct: 61  D----FGILLCGTGLGMSIAANRYRGIRAALCLFPDMARLARSHNNANILVLPGRLIGAE 116

Query: 126 SAVEILDTWLKTPF 139
            A  I+DT+L TPF
Sbjct: 117 LAFWIVDTFLSTPF 130

>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Alternate ribose 5-phosphate isomerase B, RpiB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  101 bits (252), Expect = 6e-27
 Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIG--AEVGRRVSSSDSSDTTT 70
           +++  GAD  G ELK  ++ HL+    +  D G   Y +           ++   +D  +
Sbjct: 2   MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGS 61

Query: 71  RGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEI 130
            G+V  G+G G  I ANK PG       +   A   R  NN  ++ + G   +   A+ I
Sbjct: 62  LGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAI 121

Query: 131 LDTWLKTPF 139
           +D ++ TP+
Sbjct: 122 VDAFVTTPW 130

>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]} Length = 159

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Alternate ribose 5-phosphate isomerase B, RpiB
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (252), Expect = 7e-27
 Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 9/131 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSDT 68
           KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V+  +    
Sbjct: 16  KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEV--- 72

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct: 73  -DGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAK 131

Query: 129 EILDTWLKTPF 139
            I+D WL   +
Sbjct: 132 MIVDAWLGAQY 142

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]} Length = 144

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

 Score = 69.6 bits (170), Expect = 2e-15
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 201 IPGGSMKIIRESP----TSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFD 256
             G   K++  SP     +AI    AGS   AH H    +  + +GK  V          
Sbjct: 27  TGGIRWKLLHVSPEMGSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRGGKAAGGDT 86

Query: 257 LTVGDYLFTPAGDVHR-VKYYEETEFFIKWDGRWDMFFDED 296
                Y +  A   H   ++   +EF++ + G    F   D
Sbjct: 87  AIAPGYGYESANARHDKTEFPVASEFYMSFLGPL-TFVKPD 126

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 49.8 bits (118), Expect = 1e-07
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 215 SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           + +     G V P+H H       +++GK   +    GER  +  GD++ TP    H   
Sbjct: 56  AGLQLIMPGEVAPSHRHNQSALRFIVEGK-GAFTAVDGERTPMNEGDFILTPQWRWHDHG 114

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 9/68 (13%), Positives = 19/68 (27%), Gaps = 4/68 (5%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGK-KSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
            +     G        T      V++G  + +      E F  +  D    P       +
Sbjct: 225 FLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIG---NETFSFSAKDIFVVPTWHGVSFQ 281

Query: 275 YYEETEFF 282
             +++  F
Sbjct: 282 TTQDSVLF 289

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 21/117 (17%), Positives = 36/117 (30%), Gaps = 9/117 (7%)

Query: 201 IPGGSMKIIRESPTS------AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER 254
                  ++    ++       ++    G   P H H   H+ +++   K    L  GER
Sbjct: 24  FGRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL-DGER 82

Query: 255 FDLTVGDYLFTPAGDVHRVKYYEETEFFIKW--DGRWDMFFDEDLEAAKKAVEKETA 309
           + L  GDY   PAG  H  +        + +   G     +         A     A
Sbjct: 83  YLLISGDYANIPAGTPHSYRMQSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYA 139

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 216 AIVRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
                  G     H+H +  +    L+G+ ++W  T G+   L  GD+L  PA  VH  +
Sbjct: 217 VSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMW--TDGQEIQLNPGDFLHVPANTVHSYR 274

Query: 275 YYEETEFFIKW--DGRWDMFFDEDLEAAKKAV 304
                   +     G ++ FF    +  +  +
Sbjct: 275 LDSHYTKMVGVLVPGLFEPFFRTLGDPYEGHI 306

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Length = 355

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 215 SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           S I   KAG    AH H       +++G    + +  G + +L   D++ TP G  H   
Sbjct: 87  SGIQTMKAGERAGAHRHAASALRFIMEGS-GAYTIVDGHKVELGANDFVLTPNGTWHEHG 145

Query: 275 YYEETEFFIKWDGRWDMFF 293
             E     I  DG      
Sbjct: 146 ILESGTECIWQDGLDIPLT 164

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Length = 355

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 211 ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDV 270
            +  +++   + G    AH HT      V +G+        G+RFD +  D    PA   
Sbjct: 254 LTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSI--VGGKRFDWSEHDIFCVPAWTW 311

Query: 271 HR 272
           H 
Sbjct: 312 HE 313

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 211 ESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAG 268
            SPT  + I         P H H+      V++G+  VW +  G+   ++ GD L TP  
Sbjct: 83  ISPTMWAGIQYLGPRETAPEHRHSQNAFRFVVEGE-GVWTVVNGDPVRMSRGDLLLTPGW 141

Query: 269 DVH 271
             H
Sbjct: 142 CFH 144

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 41.7 bits (97), Expect = 6e-05
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 212 SPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGK-KSVWNLTKGERFDLTVGDYLFTPAGDV 270
           +      R +AG+     +        V +G    V N   GE   L  GD    P+   
Sbjct: 262 TLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMN---GETTKLEKGDMFVVPSWVP 318

Query: 271 HRVKYYEETEFF 282
             ++   + + F
Sbjct: 319 WSLQAETQFDLF 330

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Length = 112

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 195 LNPVEMIPGGSMKIIR------ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWN 248
           L+  + +     +++       +     +     G     H       + +L G   +  
Sbjct: 13  LDLTQEVMIEQDQMLSRTLVQRQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEIT- 71

Query: 249 LTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281
               E + +  G  +  PAG  H +   E  + 
Sbjct: 72  -IDQETYRVAEGQTIVMPAGIPHALYAVEAFQM 103

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Length = 250

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 10/103 (9%)

Query: 188 CLVKNRELNPVEMIPGGSMKIIRESPTSA-------IVRFKAGSVEPAHH-HTFGHDLVV 239
            +    +  P E      + +    P          I+ F+ G+       H   H   +
Sbjct: 136 VVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYL 195

Query: 240 LQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282
           + G+         E + +  GDY+F  A            E  
Sbjct: 196 ISGQ--GMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPL 236

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Length = 250

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.2 bits (83), Expect = 0.003
 Identities = 10/60 (16%), Positives = 18/60 (30%), Gaps = 4/60 (6%)

Query: 217 IVRFKAGSVEPAHHHTFGHD--LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           I  F     +       G    + V+ G+  V +    E  +L  G Y +        + 
Sbjct: 52  IATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD--GQETHELEAGGYAYFTPEMKMYLA 109

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           +    +    P           V +G+  V  +      +L  GD  F P G   +  
Sbjct: 254 MSTTPSTVTVPTWSFPGACAFQVQEGRVVVQ-IGDYAATELGSGDVAFIPGGVEFKYY 310

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 227 PAHHHTFGHD-LVVLQGKKSVW---NLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282
             H H   ++     +G   +W        +   L+ GDY   P    H  +  +     
Sbjct: 62  LPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEM 121

Query: 283 IKW--DGRWDMFFDE 295
                 G ++  F  
Sbjct: 122 TGVIVPGGFEDLFYY 136

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 193 RELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG 252
           R ++  +M     + I+   P         G +  A  H   H L VL+GK         
Sbjct: 178 RFVDMSDMRHDMHVNIVNFEPG--------GVIPFAETHVMEHGLYVLEGKAVYR--LNQ 227

Query: 253 ERFDLTVGDYLFTPAGDVHRVK 274
           +  ++  GD+++  A       
Sbjct: 228 DWVEVEAGDFMWLRAFCPQACY 249

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.9 bits (90), Expect = 4e-04
 Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 20/88 (22%)

Query: 198 VEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDL 257
           VE+ P G                     +P         L V++G+ S+    +G+   +
Sbjct: 71  VELAPNGGSD------------------KPEQDPNAEAVLFVVEGELSLT--LQGQVHAM 110

Query: 258 TVGDYLFTPAGDVHRVKYYEETEFFIKW 285
             G Y F P G  ++V+          W
Sbjct: 111 QPGGYAFIPPGADYKVRNTTGQHTRFHW 138

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 202 PGGSMKII--RESPTS-----AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT---K 251
            GG  + +  RE P S       +R K G++   H H       ++ G   V  +    +
Sbjct: 54  KGGYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGR 113

Query: 252 GERFDLTVGDYLFTPAGDVH 271
               D+  GD  + P+G  H
Sbjct: 114 SFIDDVGEGDLWYFPSGLPH 133

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 10/97 (10%)

Query: 193 RELNPVEMIPGGSMKIIRESPTSA-------IVRFKAGSVEPAHH-HTFGHDLVVLQGKK 244
           RE           +   +  P           + F  G+  P    H   H L++L+G+ 
Sbjct: 138 RENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEG 197

Query: 245 SVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281
                 +   + +T GD ++  A              
Sbjct: 198 LYK--LEENYYPVTAGDIIWMGAHCPQWYGALGRNWS 232

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK-Y 275
                AG+   A    +     VL G+  V     GE   L   DY++ PAG+ H +   
Sbjct: 54  TAEMPAGA--QATESVYQRFAFVLSGEVDVA--VGGETRTLREYDYVYLPAGEKHMLTAK 109

Query: 276 YEETEFFIKWDGRWDMFFD 294
            +      +   +      
Sbjct: 110 TDARVSVFEKPYQTVEGVQ 128

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 217 IVRFKAGSVEPAHH-HTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY 275
           I+ F  G+       H   H   +L G+             +  GDY+F  A  +     
Sbjct: 175 ILSFAPGASHGYIETHVQEHGAYILSGQGVYN--LDNNWIPVKKGDYIFMGAYSLQAGYG 232

Query: 276 YEETEFF 282
               E F
Sbjct: 233 VGRGEAF 239

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLV--VLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           +V               G +    V+ G  +     +G+ F L+ G YL+ P G +    
Sbjct: 55  LVTLHQNGGNQQGFGGEGIETFLYVISGNITAK--AEGKTFALSEGGYLYCPPGSLMTFV 112

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHRV 273
              + K  ++   HH      L VL G+  +  +   +R  ++L  GD    PAG  + +
Sbjct: 47  VQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYL 106

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 214 TSAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRV 273
               V F+ G+    H H  G  L+V +G K  +         L  GD +  P   VH  
Sbjct: 36  QVYDVVFEPGARTHWHSHPGGQILIVTRG-KGFYQERGKPARILKKGDVVEIPPNVVHWH 94

Query: 274 KYYEETEFFI 283
               + E   
Sbjct: 95  GAAPDEELVH 104

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHRV 273
                K  ++   HH    + +V+L G   +  +   +R  ++L  GD L  PAG  + V
Sbjct: 43  LEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYV 102

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Length = 114

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.4 bits (78), Expect = 0.003
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 197 PVEMIPGGSMKII---RESPTSAIVRF--KAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK 251
             + + G   +++   +++P   +  F  + G +   H H + H++ VL+GK  +  L +
Sbjct: 15  STDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGK--LTVLKE 72

Query: 252 GERFDLTVGDYLFTPAGDVHRVKYYEETEF 281
                +  G Y+F    ++H  +   ++E 
Sbjct: 73  QGEETVEEGFYIFVEPNEIHGFRNDTDSEV 102

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]} Length = 160

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 7/71 (9%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWN-------LTKGERFDLTVGDYLFTPAGD 269
           +     G   P H H+      VL+GK ++           + +            P  D
Sbjct: 45  LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVND 104

Query: 270 VHRVKYYEETE 280
            H+V   +E E
Sbjct: 105 PHQVWNSDEHE 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1o1xa_	145	Putative sugar-phosphate isomerase {Thermotoga mar	100.0
d2vvpa1	156	Alternate ribose 5-phosphate isomerase B, RpiB {My	100.0
d1nn4a_	159	Alternate ribose 5-phosphate isomerase B, RpiB {Es	100.0
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.48
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.45
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.37
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.35
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.34
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.33
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.23
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.2
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	99.12
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.07
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	99.07
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.06
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.0
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.99
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.97
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	98.96
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	98.93
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.92
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.88
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.87
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.86
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.83
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.82
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.81
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.78
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	98.76
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	98.74
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	98.68
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	98.67
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	98.67
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	98.67
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.66
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.64
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.58
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	98.56
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	98.56
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.53
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	98.51
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.45
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.43
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.37
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	98.18
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.09
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	98.04
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.86
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	97.85
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	97.82
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.45
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.41
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	97.2
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	97.07
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.05
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	96.98
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	96.83
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	96.09
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	95.79
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	95.51
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	94.94
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	94.72
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	94.52
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	94.47
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	94.06
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	93.75
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	93.34
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	93.33
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	93.31
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	93.11
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	92.76
d1mkza_	170	MoaB {Escherichia coli [TaxId: 562]}	92.63
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	92.47
d1y5ea1	155	MoaB {Bacillus cereus [TaxId: 1396]}	92.21
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	92.06
d1p5dx1	146	Phosphomannomutase/phosphoglucomutase {Pseudomonas	90.92
d2oyza1	93	Uncharacterized protein VPA0057 {Vibrio parahaemol	86.2
d1v7ra_	186	XTP pyrophosphatase {Archaeon Pyrococcus horikoshi	85.95
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	85.34
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	84.97
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	84.94
d1uuya_	161	Plant CNX1 G domain {Mouse-ear cress (Arabidopsis	84.12
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	82.8
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	82.37
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	82.31

>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Putative sugar-phosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.5e-54  Score=365.02  Aligned_cols=135  Identities=36%  Similarity=0.496  Sum_probs=127.6

Q ss_pred             CcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhh
Q 021654           12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFA   86 (309)
Q Consensus        12 ~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaa   86 (309)
                      .|||+|||||+||+||+.|++||+++||+|+|+|++     ||||++.+||+.|.+    +++++||++||||+||+|+|
T Consensus         2 ~mkI~igsDh~G~~lK~~l~~~L~~~g~~v~D~G~~~~~~~dYpd~a~~va~~v~~----~~~~~GIliCGtG~G~siaA   77 (145)
T d1o1xa_           2 HVKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILS----NEADFGILLCGTGLGMSIAA   77 (145)
T ss_dssp             CCEEEEEECSTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSCSEEEEEESSSHHHHHHH
T ss_pred             CcEEEEEeCChHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCccHHHHHHHHHHhc----CcccEEEEecCCcHHHHHHH
Confidence            599999999999999999999999999999999985     699999999999998    99999999999999999999


Q ss_pred             cCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhh
Q 021654           87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEEN  154 (309)
Q Consensus        87 NK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~  154 (309)
                      |||||||||+|+|+++|+|+|+||||||||||+|+++++.|++|+++||+|+|++|    ++.++.+.
T Consensus        78 NK~~GIRAa~~~d~~~A~~ar~hNnaNvL~lGa~~~~~~~a~~iv~~~l~t~F~gg----Rh~~Rv~k  141 (145)
T d1o1xa_          78 NRYRGIRAALCLFPDMARLARSHNNANILVLPGRLIGAELAFWIVDTFLSTPFDGG----RHERRIRK  141 (145)
T ss_dssp             TTSTTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHHHCCCCCT----THHHHHHH
T ss_pred             HcCCCCeeeeecCHHHHHHHHHhcCceEEEEccEecCHHHHHHHHHHHHCCCCCCC----cHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999874    44444443

>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Alternate ribose 5-phosphate isomerase B, RpiB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1e-54  Score=369.78  Aligned_cols=143  Identities=26%  Similarity=0.404  Sum_probs=133.3

Q ss_pred             CcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhh
Q 021654           12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIF   85 (309)
Q Consensus        12 ~mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~ia   85 (309)
                      .|||+|||||+||+||+.|++||+++||+|+|+|++      |||+++.++|+.|.+    ++.+|||||||||+||+|+
T Consensus         1 ~MKI~igsDh~G~~LK~~l~~~L~~~g~~viD~G~~~~~~~~dYpd~a~~va~~v~~----~~~~~GIliCGtG~G~sIa   76 (156)
T d2vvpa1           1 GMRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVA----DPGSLGIVLGGSGNGEQIA   76 (156)
T ss_dssp             CCEEEEEECHHHHHHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHH----STTCEEEEEESSSHHHHHH
T ss_pred             CCEEEEEeCCcHHHHHHHHHHHHHHCCCEEEecCCCcccCCCchhHHHHHHHHHhhc----cccceEEEeecCcHHHHHH
Confidence            389999999999999999999999999999999984      599999999999999    8999999999999999999


Q ss_pred             hcCCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhh
Q 021654           86 ANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDK  161 (309)
Q Consensus        86 aNK~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~  161 (309)
                      |||+||||||+|+|+++|+|+|+|||+||||||+|++++++|++|+++||+|+|..   .+++.++.+.|..++++
T Consensus        77 ANK~~GIRAal~~d~~~A~~ar~hNnaNVL~lGa~~~~~~~a~~iv~~~l~t~F~~---ggRh~~Rv~ki~~~e~~  149 (156)
T d2vvpa1          77 ANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSK---AQRHQRRIDILAEYERT  149 (156)
T ss_dssp             HHTSTTCCEEECCSHHHHHHHHHTTCCSEEEEEGGGSCHHHHHHHHHHHHHSCCCC---CHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCeEeeeeCCHHHHHHHHHhcCCcEEEEcceecCHHHHHHHHHHHHcCCCCC---CChHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999952   35677777777666653

>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Alternate ribose 5-phosphate isomerase B, RpiB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.2e-54  Score=367.29  Aligned_cols=138  Identities=35%  Similarity=0.511  Sum_probs=129.7

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhc
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaN   87 (309)
                      +||+|||||+||+||+.|++||+++||+|+|+|++     ||||++.+||+.|.+    ++.++||+|||||+||+|+||
T Consensus        15 kkI~igsDhaG~~lK~~l~~~L~~~g~~V~D~G~~~~~~~DYpd~a~~va~~v~~----~~~~~GIliCGtG~G~~IaAN   90 (159)
T d1nn4a_          15 KKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAG----GEVDGGILICGTGVGISIAAN   90 (159)
T ss_dssp             SEEEEEECTTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSSSEEEEEESSSHHHHHHHH
T ss_pred             eEEEEEeCCchHHHHHHHHHHHHHCCCEEEECCCCcccccCccHHHHHHHHHHHh----ccceeEEEecCCchHHHHHHH
Confidence            49999999999999999999999999999999985     599999999999998    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhh
Q 021654           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCF  158 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~f  158 (309)
                      |+||||||+|+|+++|+|+|+||||||||||+|++++++|++|+++||+|+|++|    ++.++.+.|..+
T Consensus        91 K~~GIRAa~~~d~~sA~~ar~HNnaNVL~lGar~~~~~~a~~iv~~fl~t~F~gg----Rh~~Rv~ki~~~  157 (159)
T d1nn4a_          91 KFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMIVDAWLGAQYEGG----RHQQRVEAITAI  157 (159)
T ss_dssp             TSTTCCEEECSSHHHHHHHHHHHCCCEEEEETTTBCHHHHHHHHHHHHHCCCCCT----THHHHHHHHHHH
T ss_pred             hccCceeeeecchHHHHHHHHhcCCcEEEecceecCHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999974    555666655544

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=9.5e-14  Score=109.90  Aligned_cols=80  Identities=19%  Similarity=0.358  Sum_probs=67.1

Q ss_pred             CceEEEeeeCC---Ce--EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC
Q 021654          203 GGSMKIIRESP---TS--AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       203 gg~~~il~~~~---~~--~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g  277 (309)
                      |...+.+....   ..  ..++++||+..+.|+|+..|++||++|+++++  .+++.+.+++||++++|+|.+|+++|.+
T Consensus        21 G~~~~~l~~~~~~~~~~~~~~~i~pG~~~~~H~H~~~e~~~vl~G~~~~~--~~~~~~~l~~Gd~~~ip~~~~H~~~n~~   98 (114)
T d1vj2a_          21 GVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVL--KEQGEETVEEGFYIFVEPNEIHGFRNDT   98 (114)
T ss_dssp             EEEEEEEECTTTCSSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEEE--CSSCEEEEETTEEEEECTTCCEEEECCS
T ss_pred             CEEEEEEeCCCCCCceEEEEEEECCCCCCCceECCCcEEEEEEEceeEEE--EeeeeeEEecCeEEEEcCCCeEEEEeCC
Confidence            44555554332   21  56889999999999999999999999999995  5699999999999999999999999999


Q ss_pred             CceEEEE
Q 021654          278 ETEFFIK  284 (309)
Q Consensus       278 d~~~~i~  284 (309)
                      ++++.++
T Consensus        99 ~~~~~~l  105 (114)
T d1vj2a_          99 DSEVEFL  105 (114)
T ss_dssp             SSCEEEE
T ss_pred             CCCEEEE
Confidence            8888544

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.45  E-value=4.7e-13  Score=105.25  Aligned_cols=69  Identities=12%  Similarity=0.154  Sum_probs=61.8

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC-eEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG-ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~-~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      ..++++||+..|+|+|+..+++|||+|++.+++  ++ +++.+++||++++|+|++|+++|.++.++.++++
T Consensus        29 ~~~~l~pG~~~p~H~H~~~e~~~Vl~G~~~~~v--~~~e~~~v~~Gd~i~ip~~~~H~~~n~~~e~l~~l~v   98 (108)
T d2b8ma1          29 NHIVLPRGEQMPKHYSNSYVHLIIIKGEMTLTL--EDQEPHNYKEGNIVYVPFNVKMLIQNINSDILEFFVV   98 (108)
T ss_dssp             EEEEEETTCBCCCEECSSCEEEEEEESEEEEEE--TTSCCEEEETTCEEEECTTCEEEEECCSSSEEEEEEE
T ss_pred             EEEEECCCCcChhhcccccEEEEEEeeeEEEEE--ecccEEEeecceEeeccCCceEEEEcCCCCcEEEEEE
Confidence            678999999999999999999999999999964  45 4689999999999999999999999988865544

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.37  E-value=2.7e-12  Score=101.11  Aligned_cols=67  Identities=16%  Similarity=0.258  Sum_probs=61.5

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      .++.++||...++|+|+..+.+||++|+++++  .+++.+.+++||++++|+|++|+++|.++..+++.
T Consensus        40 ~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~--~~~~~~~l~~Gd~~~ip~~~~H~~~a~~~~~~l~~  106 (112)
T d1yhfa1          40 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEIT--IDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLV  106 (112)
T ss_dssp             EEEEECTTCEEEEECCSSEEEEEEEESEEEEE--ETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEE
T ss_pred             EEEEECCCCCcceEECCCCEEEEEEeCEEEEE--EccEEEEecCCEEEEcCCCCeEEeEECCCcEEEEE
Confidence            67899999999999999988899999999995  46999999999999999999999999998887644

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=1.6e-12  Score=102.97  Aligned_cols=67  Identities=22%  Similarity=0.319  Sum_probs=59.5

Q ss_pred             EEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..++++||+..++|+|+. .|.+||++|+++++  .+++.+.+++||++++|+|.+|+++|.+++++.++
T Consensus        42 ~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~~--~~~~~~~l~~Gd~~~ip~g~~H~~~N~g~~~~~~l  109 (115)
T d1o4ta_          42 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFH--DNGKDVPIKAGDVCFTDSGESHSIENTGNTDLEFL  109 (115)
T ss_dssp             EEEEECTTCEEEEEECCSEEEEEEEEESEEEEE--ETTEEEEEETTEEEEECTTCEEEEECCSSSCEEEE
T ss_pred             EEEEECCCCCcCCEECCCCcEEEEEEECcceEE--EcCeeEEeeccEEEEECCCCeEEEEECCCCCEEEE
Confidence            356899999999999986 56689999999995  46999999999999999999999999999887543

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=3.4e-12  Score=98.45  Aligned_cols=69  Identities=22%  Similarity=0.231  Sum_probs=61.3

Q ss_pred             EEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      .+++++||+..++|+|+.. |++||++|+++++  .+++++.+++||++++|+|++|+++|.+++++.++++
T Consensus        31 ~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~~--~~~~~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l~v  100 (105)
T d1v70a_          31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVR--VGEEEALLAPGMAAFAPAGAPHGVRNESASPALLLVV  100 (105)
T ss_dssp             EEEEECTTCEEEEECCSSCEEEEEEEESCEEEE--ETTEEEEECTTCEEEECTTSCEEEECCSSSCEEEEEE
T ss_pred             EEEEECCCCCCcceECCCCeEEEEEEeeEEEEE--EeeeEEEecceEEEEeCCCCEEEeEECCCCCEEEEEE
Confidence            5678999999999999875 6699999999995  4699999999999999999999999999988876543

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.33  E-value=3.1e-12  Score=98.78  Aligned_cols=69  Identities=14%  Similarity=0.104  Sum_probs=61.4

Q ss_pred             EEEEEcCCCcC--CCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKAGSVE--PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~--p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      .+++++||+..  +.|+|...|.+||++|+++++  .+++++.|++||++++|++++|++.|.++.+++++++
T Consensus        25 ~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~~--~~~~~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~vi   95 (99)
T d1y9qa2          25 FEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVF--FDEQWHELQQGEHIRFFSDQPHGYAAVTEKAVFQNIV   95 (99)
T ss_dssp             EEEEECTTCEEEECCCSTTCEEEEEEEESCEEEE--ETTEEEEECTTCEEEEECSSSEEEEESSSCEEEEEEE
T ss_pred             EEEEEeCCcEeccccccCCcEEEEEEEcCceEEE--ecceEEEecCCCEEEECCCCeEEEEeCCccCEEEEEE
Confidence            56789999865  778888889999999999995  4699999999999999999999999999999877654

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.23  E-value=1.9e-11  Score=102.33  Aligned_cols=70  Identities=19%  Similarity=0.266  Sum_probs=60.1

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC-------CeEEEecCCcEEEECCCCeEEEEEcCC-ceEEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK-------GERFDLTVGDYLFTPAGDVHRVKYYEE-TEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~-------~~~~~L~pGD~v~IP~g~~H~~~n~gd-~~~~i~~  285 (309)
                      .+.+++||...+.|+|+..|.+||++|++.+++...       .+++.|.|||++++|+|++|+++|.++ +++.++.
T Consensus        44 ~~~~l~PG~~~~~H~H~~~e~~~Vl~G~g~~~i~~~~~~~~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~~E~l~~l~  121 (160)
T d1lr5a_          44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDEHEDLQVLV  121 (160)
T ss_dssp             EEEEECTTCBCCEEEESSCEEEEEEECCEEEEECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCSSSCEEEEE
T ss_pred             EEEEECCCccccceeccccEEEEEEeeeEEEEECCccccccccceEEEecCCCEEEeCCCCcEEEEECCCCCCEEEEE
Confidence            567999999999999999999999999999976421       277999999999999999999999986 5665443

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=3e-11  Score=98.63  Aligned_cols=66  Identities=26%  Similarity=0.204  Sum_probs=59.4

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      ..++++||...++|+|+..|.+|||+|++++++. +++.+.++|||++|+|||++|...+.++..+.
T Consensus        38 ~~vtf~PG~~~~~H~H~~~q~~~Vl~G~~~~~~~-g~~~~~~~~Gd~v~ippg~~H~~~a~~~~~~~  103 (134)
T d2f4pa1          38 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQER-GKPARILKKGDVVEIPPNVVHWHGAAPDEELV  103 (134)
T ss_dssp             EEEEECTTCEECSEECTTCEEEEEEEEEEEEEET-TSCCEEEETTCEEEECTTCCEEEEEBTTBCEE
T ss_pred             EEEEECCCCcCccccCCCCEEEEEEeCEEEEEEC-CcceEEEcCCCeEEECCCCceECccCCCCcEE
Confidence            6789999999999999999999999999999542 45668999999999999999999999988765

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=99.12  E-value=1.8e-10  Score=92.14  Aligned_cols=71  Identities=14%  Similarity=0.004  Sum_probs=58.2

Q ss_pred             EEEEEcCCCcC---CCeecCCceEEEEEecEEEEEEe--eCCeEEEecCCcEEEECCCCeEEEEEc-CCceEEEEEc
Q 021654          216 AIVRFKAGSVE---PAHHHTFGHDLVVLQGKKSVWNL--TKGERFDLTVGDYLFTPAGDVHRVKYY-EETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~---p~H~H~~~e~vyVlsG~l~v~i~--~~~~~~~L~pGD~v~IP~g~~H~~~n~-gd~~~~i~~~  286 (309)
                      .++++.|+...   ..|.|...|++|||+|++++++.  .+++++.|+|||++++|++++|+++|. ++.+..++++
T Consensus        44 ~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~~l~V  120 (122)
T d2bnma2          44 LVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAV  120 (122)
T ss_dssp             EEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTTSCCEEEEEE
T ss_pred             EEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCEEEEEccCcEEEeCCCCCEEEEcCCCCccEEEEEE
Confidence            67888887654   23568889999999999999764  235789999999999999999999997 5777776654

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.07  E-value=7.3e-10  Score=98.76  Aligned_cols=66  Identities=20%  Similarity=0.302  Sum_probs=58.5

Q ss_pred             EEEEEcCCCcCCC-eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC-CceEEE
Q 021654          216 AIVRFKAGSVEPA-HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~~p~-H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~i  283 (309)
                      .++.+.||+..+. |+|..+|++||++|+++++  ++++.+.+++||++|+||+++|++.|.| +.++++
T Consensus       171 ~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~~--~~~~~~~~~~GD~i~~~~~~pH~~~n~G~~~~~~~  238 (250)
T d1sefa_         171 HILSFEPGASHAYIETHVQEHGAYLISGQGMYN--LDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPLMY  238 (250)
T ss_dssp             EEEEECTTCBCSSCBCCSCCEEEEEEECEEEEE--ETTEEEEEETTCEEEECTTCCEEEEEECSSSCEEE
T ss_pred             EEEEECCCCccCccCccCceEEEEEeCCEEEEE--ECCEEEEecCCCEEEECCCCCEEeEcCCCCCcEEE
Confidence            6789999999986 7788888899999999995  4699999999999999999999999999 556543

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=99.07  E-value=1.3e-10  Score=95.61  Aligned_cols=94  Identities=24%  Similarity=0.312  Sum_probs=75.4

Q ss_pred             CCceEEEeeeCCC----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEE-EEEc
Q 021654          202 PGGSMKIIRESPT----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR-VKYY  276 (309)
Q Consensus       202 pgg~~~il~~~~~----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~-~~n~  276 (309)
                      +|-++++++.++.    ..+++++||...|.|+|+..+++|||+|++.+.-........+.+|+++|.|+|.+|. ....
T Consensus        28 ~G~~~k~L~~d~~tg~~~~l~r~~~G~~~p~H~H~~~e~~~VL~G~l~~~~g~~~~g~~~~~g~y~~~Pag~~H~~~~~~  107 (144)
T d2o1qa1          28 GGIRWKLLHVSPEMGSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRGGKAAGGDTAIAPGYGYESANARHDKTEFP  107 (144)
T ss_dssp             SCCEEEEEEEETTTTEEEEEEEECTTEEECCEEESSCEEEEEEEEEEEETTCGGGTSEEEESSEEEEECTTCEESCCEEE
T ss_pred             CCeEEEEeeeCCCCCcEEEEEEeCCCcCcCCCccccCEEEEEEEEEEEecCCCcCCCceEeCCceeEcCCCCeEccccCC
Confidence            5677888876654    3789999999999999999999999999999831111123577799999999999997 4566


Q ss_pred             CCceEEEEEcCccccccchh
Q 021654          277 EETEFFIKWDGRWDMFFDED  296 (309)
Q Consensus       277 gd~~~~i~~~~~~~i~~~e~  296 (309)
                      +++.+++.+.|.+ .|++++
T Consensus       108 e~~~~~~~~~Gp~-~~ld~d  126 (144)
T d2o1qa1         108 VASEFYMSFLGPL-TFVKPD  126 (144)
T ss_dssp             EEEEEEEEEESCE-EEECTT
T ss_pred             CCEEEEEEEECCe-EEECCC
Confidence            7888888888887 688887

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.06  E-value=1.1e-09  Score=97.31  Aligned_cols=67  Identities=18%  Similarity=0.209  Sum_probs=60.4

Q ss_pred             EEEEEcCCCcCCCee-cCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHH-HTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~-H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      .++++.||...+.|. |..+|.+|||+|++.+.  ++++.+.+++||++|+|++++|++.|.+++++.++
T Consensus       168 ~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~~--i~~~~~~v~~GD~i~~~~~~~H~~~n~g~~~~~~l  235 (245)
T d1sfna_         168 STMSFAPGASLPYAEVHYMEHGLLMLEGEGLYK--LEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYL  235 (245)
T ss_dssp             EEEEECTTCBCSSCBCCSSCEEEEEEECEEEEE--ETTEEEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             EEEEEccCceeeceecCCceEEEEEeCCEEEEE--ECCEEEEecCCCEEEECCCCCEeeEeCCCCCEEEE
Confidence            678999999999865 88888899999999995  46999999999999999999999999999887643

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=1.1e-09  Score=97.48  Aligned_cols=63  Identities=21%  Similarity=0.269  Sum_probs=54.6

Q ss_pred             EEEEEcCCCcCC-CeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          216 AIVRFKAGSVEP-AHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~~~l~pG~~~p-~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      .++++.||+..+ .|+|..+|.+|||+|+++++  ++++.+.+.+||++|+||+++|++.|.+..+
T Consensus       174 ~~~~~~PG~~~~~~h~h~~ee~~~vl~G~g~~~--i~~~~~~~~~GD~i~~~~~~ph~~~~~g~~~  237 (253)
T d1rc6a_         174 HILSFAPGASHGYIETHVQEHGAYILSGQGVYN--LDNNWIPVKKGDYIFMGAYSLQAGYGVGRGE  237 (253)
T ss_dssp             EEEEECTTCCBEEEEEESSCEEEEEEESEEEEE--SSSCEEEEETTCEEEECSSEEEEEEEC----
T ss_pred             EEEEECCCceEeEEEeCCceEEEEEeCCEEEEE--ECCEEEEecCCCEEEECCCCCEeeeeCCCCC
Confidence            678999999887 68899999999999999995  5699999999999999999999999998544

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.99  E-value=5e-10  Score=101.40  Aligned_cols=67  Identities=27%  Similarity=0.356  Sum_probs=60.5

Q ss_pred             EEEEEcCCCcCC-CeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEP-AHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p-~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      .++++.||...+ .|+|..+|.+|||+|++++++  +++.+.+++||++|+|++++|.+.|.+++++.++
T Consensus       192 ~i~~~~PG~~~~~~h~H~~ee~~~vl~G~~~~~~--~~~~~~v~~GD~i~~~~~~ph~~~n~g~~p~~yl  259 (273)
T d1sq4a_         192 NIVNFEPGGVIPFAETHVMEHGLYVLEGKAVYRL--NQDWVEVEAGDFMWLRAFCPQACYSGGPGRFRYL  259 (273)
T ss_dssp             EEEEECSSSEESCCCCCSEEEEEEEEECEEEEEE--TTEEEEEETTCEEEEEESCCEEEECCSSSCEEEE
T ss_pred             EEEEEccCCccccccccccceEEEEEccEEEEEE--CCEEEEecCCCEEEECCCCCEEeEeCCCCCEEEE
Confidence            678999998776 799999888999999999954  6999999999999999999999999999887644

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.97  E-value=6.9e-10  Score=102.27  Aligned_cols=98  Identities=21%  Similarity=0.311  Sum_probs=75.2

Q ss_pred             EEeecCCCCCeeecCCceEEEeeeCC----C--eEEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCC
Q 021654          188 CLVKNRELNPVEMIPGGSMKIIRESP----T--SAIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVG  260 (309)
Q Consensus       188 ~v~~~~e~~~~~~~pgg~~~il~~~~----~--~~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pG  260 (309)
                      -+++..+.+.... +|...+++....    .  ...++++||...++|+|.. .|.+||++|+++++  ++++++.|.+|
T Consensus        12 ~~~~~geg~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~--~~~~~~~l~~G   88 (330)
T d1y3ta1          12 YLLRSGEGERYLF-GRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELT--LDGERYLLISG   88 (330)
T ss_dssp             EEECTTCSEEEEE-TTEEEEEEECHHHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEEE--ETTEEEEECTT
T ss_pred             EEECCCCccEEEe-CCceEEEEEeccCCCCcEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEEE--ECCEEEEEcCC
Confidence            5667777665543 454555443221    1  1667899999999999975 56799999999996  46999999999


Q ss_pred             cEEEECCCCeEEEEEcCCceEEEEEcCc
Q 021654          261 DYLFTPAGDVHRVKYYEETEFFIKWDGR  288 (309)
Q Consensus       261 D~v~IP~g~~H~~~n~gd~~~~i~~~~~  288 (309)
                      |++++|+|++|+++|.++...++.|...
T Consensus        89 d~~~~p~~~~H~~~n~~~~~~~l~~~~p  116 (330)
T d1y3ta1          89 DYANIPAGTPHSYRMQSHRTRLVSYTMK  116 (330)
T ss_dssp             CEEEECTTCCEEEEECSTTEEEEEEEET
T ss_pred             CEEEeCCCCeEEEEEcCCCeEEEEEECC
Confidence            9999999999999999987766666544

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.96  E-value=1.4e-09  Score=87.24  Aligned_cols=63  Identities=19%  Similarity=0.329  Sum_probs=52.2

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      ..++++||..  .|+|+.+|++||++|+++++  .+++.+.|++||++++|+|++|+++|.++..++
T Consensus        57 ~~~~~~~g~~--~~~~~~~E~~~vl~G~~~~~--~~g~~~~l~~Gd~~~~p~g~~h~~~~~~~~~~~  119 (128)
T d2pyta1          57 GFMQWDNAFF--PWTLNYDEIDMVLEGELHVR--HEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFL  119 (128)
T ss_dssp             EEEEEEEEEE--EEECSSEEEEEEEEEEEEEE--ETTEEEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred             EEEEECCCcc--ceeCCccEEEEEEEeEEEEE--ECCEEEEecCCCEEEECCCCEEEEEeCCCEEEE
Confidence            5677787753  23467777899999999996  469999999999999999999999998876543

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.93  E-value=2e-09  Score=101.41  Aligned_cols=98  Identities=20%  Similarity=0.263  Sum_probs=75.6

Q ss_pred             CCCCeeecCCceEEEeeeCC--C-----eEEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCC---eEEEecCCcE
Q 021654          194 ELNPVEMIPGGSMKIIRESP--T-----SAIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKG---ERFDLTVGDY  262 (309)
Q Consensus       194 e~~~~~~~pgg~~~il~~~~--~-----~~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~---~~~~L~pGD~  262 (309)
                      +..++ ..+||+.+++....  .     ..+++++||+..++|||+. .|+.||++|++++++...+   .++.+++||+
T Consensus       225 ~q~P~-~~~gG~~~~~d~~~fp~~~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv  303 (372)
T d1j58a_         225 EQEPI-ESEGGKVYIADSTNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDV  303 (372)
T ss_dssp             GSCCE-ECSSEEEEEESTTTSTTCCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCE
T ss_pred             ccCCc-ccCCccEEEeccccCCccCceeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEcCCCceEEEEecCCcE
Confidence            33444 35678877765432  1     2688999999999999975 6679999999999764322   4689999999


Q ss_pred             EEECCCCeEEEEEcCCceEEEEEcCccccc
Q 021654          263 LFTPAGDVHRVKYYEETEFFIKWDGRWDMF  292 (309)
Q Consensus       263 v~IP~g~~H~~~n~gd~~~~i~~~~~~~i~  292 (309)
                      ++||+|.+|.+.|.+++++.+++...-+.|
T Consensus       304 ~~iP~g~~H~i~N~g~e~l~~l~vf~s~~~  333 (372)
T d1j58a_         304 GYVPFAMGHYVENIGDEPLVFLEIFKDDHY  333 (372)
T ss_dssp             EEECTTCBEEEEECSSSCEEEEEEESSSSC
T ss_pred             EEECCCCeEEEEECCCCCEEEEEEECCCCc
Confidence            999999999999999999887765444433

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.92  E-value=1.1e-09  Score=97.63  Aligned_cols=69  Identities=14%  Similarity=0.126  Sum_probs=58.3

Q ss_pred             EEEEEcCCCcC--CCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          216 AIVRFKAGSVE--PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~~~l~pG~~~--p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      .++++.||+..  +.|+|..+|++||++|+++++  .+++.+.|.+||++|+|+|++|+++|.+++++.++|.
T Consensus        51 ~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~~--~~~~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v  121 (250)
T d1sefa_          51 YIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVS--DGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLY  121 (250)
T ss_dssp             EEEEEEEEEEECSCSSBTTEEEEEEEEESEEEEE--CSSCEEEEETTEEEEECTTSCCEEEESSSSCEEEEEE
T ss_pred             EEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEEE--ECCEEEEEcCCCEEEEcCCCcEEEEECCCCCEEEEEE
Confidence            67889998765  334444556789999999995  4699999999999999999999999999999888776

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.88  E-value=1.1e-08  Score=95.12  Aligned_cols=93  Identities=12%  Similarity=0.166  Sum_probs=68.0

Q ss_pred             EEeecCCCCCeeecCCceEEEeeeCCC-----e-EEEEEcCCCc--CCCeecCC-ceEEEEEecEEEEEEee---CCeEE
Q 021654          188 CLVKNRELNPVEMIPGGSMKIIRESPT-----S-AIVRFKAGSV--EPAHHHTF-GHDLVVLQGKKSVWNLT---KGERF  255 (309)
Q Consensus       188 ~v~~~~e~~~~~~~pgg~~~il~~~~~-----~-~~~~l~pG~~--~p~H~H~~-~e~vyVlsG~l~v~i~~---~~~~~  255 (309)
                      -|++..+........+..++++...+.     . ....++||..  .++|+|.. .|.+||++|++++++..   +++++
T Consensus        15 ~vi~~~~~~~~~~~g~~~~~~~~~~~~t~g~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~   94 (348)
T d1juha_          15 YVIRHYSHARAVTVDTQLYRFYVTGPSSGYAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTR   94 (348)
T ss_dssp             EEECTTCCTTCEEETTEEEEEEECHHHHTTSCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEE
T ss_pred             EEecCCCCceEEecCCCEEEEEeccccCCCeEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEE
Confidence            466777766655444444554432221     1 5667888874  47899985 46699999999998743   24789


Q ss_pred             EecCCcEEEECCCCeEEEEEcCCce
Q 021654          256 DLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       256 ~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      .|.+||++++|+|++|+++|.++..
T Consensus        95 ~l~~GD~~~~P~g~~H~~~n~~~~~  119 (348)
T d1juha_          95 VLSSGDYGSVPRNVTHTFQIQDPDT  119 (348)
T ss_dssp             EEETTCEEEECTTEEEEEEECSTTE
T ss_pred             EeCCCCEEEECCCCeEeeEeCCCCc
Confidence            9999999999999999999998644

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=1.5e-09  Score=99.32  Aligned_cols=69  Identities=22%  Similarity=0.314  Sum_probs=61.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      .+..++||...+.|+|+..|.+|||+|++.+++ .+++.+.+.+||++++|+|++|.++|.+++++.++.
T Consensus        57 ~~~~l~PG~~~~~H~H~~~e~~~vl~G~g~~t~-~~~~~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l~  125 (308)
T d2d40a1          57 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAFTA-VDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWLD  125 (308)
T ss_dssp             EEEEECTTCEEEEEEESSCEEEEEEECSSCEEE-ETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEEE
T ss_pred             eeEEECCCCccccccCchhheEEEEEeeEEEEE-ecCEEEEecCCCEEEeCCCceEEeEECCCCCEEEEE
Confidence            577899999999999999999999999998753 468899999999999999999999999998876543

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.86  E-value=1.9e-09  Score=97.44  Aligned_cols=70  Identities=21%  Similarity=0.338  Sum_probs=59.2

Q ss_pred             EEEEEcCCCcC--CCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654          216 AIVRFKAGSVE--PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       216 ~~~~l~pG~~~--p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~  287 (309)
                      .++++.||+..  |.|.|..++++||++|+++++  .+++++.|.+||++|+|+|++|+++|.++.++.+.|..
T Consensus        69 y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l~--~~g~~~~L~~Gd~~y~P~g~~h~~~N~g~~~a~~l~i~  140 (273)
T d1sq4a_          69 YIVELAPNGGSDKPEQDPNAEAVLFVVEGELSLT--LQGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWIR  140 (273)
T ss_dssp             EEEEEEEEEEESSCCCCTTEEEEEEEEESCEEEE--ESSCEEEECTTEEEEECTTCCEEEECCSSSCEEEEEEE
T ss_pred             EEEEECCCCccCCCCCCCCcEEEEEEEeCEEEEE--ECCEEEEecCCCEEEECCCCcEeeeecCCCCEEEEEEE
Confidence            67889998754  444444566799999999996  46999999999999999999999999999999888864

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=3.4e-09  Score=94.37  Aligned_cols=70  Identities=19%  Similarity=0.272  Sum_probs=58.7

Q ss_pred             EEEEEcCCCcCCC--eecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEcC
Q 021654          216 AIVRFKAGSVEPA--HHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       216 ~~~~l~pG~~~p~--H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~~  287 (309)
                      .++++.||+....  |.|..++++||++|+++++  .+++++.|.+||++++|+++.|++.|.+++++.+.|+-
T Consensus        54 ~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~~--~~~~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v~  125 (253)
T d1rc6a_          54 YLVTLHQNGGNQQGFGGEGIETFLYVISGNITAK--AEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYK  125 (253)
T ss_dssp             EEEEEEEEEEESSCSCCTTEEEEEEEEESEEEEE--ETTEEEEEETTEEEEECTTCCCEEEECSSSCEEEEEEE
T ss_pred             EEEEECCCcccCCcccCCCcEEEEEEEECEEEEE--ECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEEE
Confidence            6678999876544  4444555689999999995  46999999999999999999999999999998887763

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.82  E-value=6.1e-09  Score=90.11  Aligned_cols=67  Identities=24%  Similarity=0.279  Sum_probs=56.7

Q ss_pred             EEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEee----CCe--EEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLT----KGE--RFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~----~~~--~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      ..+.+.||+..++|||+.. |++||++|++++.+..    +++  ...|++||.+++|+|.+|...|.++++.+
T Consensus        75 ~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~  148 (201)
T d2et1a1          75 NRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAY  148 (201)
T ss_dssp             EEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEE
T ss_pred             EEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEE
Confidence            5689999999999999865 6699999999997531    222  46899999999999999999999988754

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.81  E-value=1.4e-08  Score=93.34  Aligned_cols=63  Identities=25%  Similarity=0.478  Sum_probs=55.9

Q ss_pred             EEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          216 AIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      ..++++||...++|+|+. .|.+||++|+++++  ++++++.+.+||++++|+|.+|+++|.++..
T Consensus       217 ~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~~--v~~~~~~~~~Gd~~~vP~g~~H~~~~~~~~~  280 (330)
T d1y3ta1         217 VSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMW--TDGQEIQLNPGDFLHVPANTVHSYRLDSHYT  280 (330)
T ss_dssp             EEEEECSCCCCCCEECSSCEEEEEEEESCEEEE--ETTEEEEECTTCEEEECTTCCEEEEECSSSE
T ss_pred             EEEEECCCCccCccCcCCccEEEEEEecEEEEE--ECCEEEEeCCCCEEEECcCCcEEeEeCCCCe
Confidence            567899999999999985 56799999999995  4699999999999999999999999987543

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.78  E-value=2.1e-08  Score=85.80  Aligned_cols=75  Identities=21%  Similarity=0.226  Sum_probs=57.9

Q ss_pred             EEEEEcCCCcCC------CeecC---CceEEEEEecEEEEEEeeC---CeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          216 AIVRFKAGSVEP------AHHHT---FGHDLVVLQGKKSVWNLTK---GERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~~p------~H~H~---~~e~vyVlsG~l~v~i~~~---~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      .+..+.||....      -|+|+   ..|.+|||+|++.+.+...   .+.+.+.|||+++||+|..|++.|++++++.+
T Consensus        70 ~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~Gde~L~~  149 (190)
T d1x82a_          70 ATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIF  149 (190)
T ss_dssp             EEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSSCEEE
T ss_pred             EEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECCCCCEEE
Confidence            456788886443      36664   4677999999999976532   24688999999999999999999999998876


Q ss_pred             EEcCccc
Q 021654          284 KWDGRWD  290 (309)
Q Consensus       284 ~~~~~~~  290 (309)
                      ++...-+
T Consensus       150 l~v~~~~  156 (190)
T d1x82a_         150 LAIYPAD  156 (190)
T ss_dssp             EEEEETT
T ss_pred             EEEECCC
Confidence            6554443

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.76  E-value=4.2e-08  Score=82.75  Aligned_cols=86  Identities=13%  Similarity=0.135  Sum_probs=63.4

Q ss_pred             eeecCCceEEEeeeCC---------CeEEEEEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeC-C-eE--EEecCCcEE
Q 021654          198 VEMIPGGSMKIIRESP---------TSAIVRFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTK-G-ER--FDLTVGDYL  263 (309)
Q Consensus       198 ~~~~pgg~~~il~~~~---------~~~~~~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~-~-~~--~~L~pGD~v  263 (309)
                      +.-..||+++.+....         ....+.++||+..++|||+. .+++||++|++++++... + +.  +.|++||.+
T Consensus        18 ~~~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~   97 (174)
T d1fxza2          18 IYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL   97 (174)
T ss_dssp             EEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             cCcCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEE
Confidence            3344566666553321         12678999999999999975 456999999999976432 2 33  459999999


Q ss_pred             EECCCCeEEEEEcCCceEEE
Q 021654          264 FTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       264 ~IP~g~~H~~~n~gd~~~~i  283 (309)
                      ++|+|.+|...|.++...++
T Consensus        98 vvP~G~~h~~~n~~~~~~~v  117 (174)
T d1fxza2          98 IVPQNFVVAARSQSDNFEYV  117 (174)
T ss_dssp             EECTTCEEEEEECSTTEEEE
T ss_pred             EECCCCEEEEEeCCCCeEEE
Confidence            99999999999987654333

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=98.68  E-value=2.9e-08  Score=83.51  Aligned_cols=89  Identities=16%  Similarity=0.227  Sum_probs=66.5

Q ss_pred             cCCCCCeeecCCceEEEeeeC----------C-C-eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eEEEe
Q 021654          192 NRELNPVEMIPGGSMKIIRES----------P-T-SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ERFDL  257 (309)
Q Consensus       192 ~~e~~~~~~~pgg~~~il~~~----------~-~-~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~~~L  257 (309)
                      .++|..+--..+|+++.+...          . . -..+++.||+...+|+|...+++||++|++++.+...+  .++.+
T Consensus        11 ~~~f~~~~~~~~G~i~~~~~~~~~~~~l~~l~~~~v~~~~i~p~~~~~Ph~~~a~ei~yV~~G~g~v~~v~~~~~~~~~l   90 (170)
T d1uija1          11 SNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNL   90 (170)
T ss_dssp             GGSEEEEEECSSEEEEEECCHHHHCGGGGGGTTCEEEEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEE
T ss_pred             ccccccccccCCCcEEEEecccccchhhcchhheEEEEEEecCCcccccccCCCCEEEEEEEEEEEEEEEeCCCcEEEEe
Confidence            444554444556666655321          1 1 15678999999999988888889999999999664333  66899


Q ss_pred             cCCcEEEECCCCeEEEEEcCCce
Q 021654          258 TVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       258 ~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      ++||.++||+|.+|.+.|.++.+
T Consensus        91 ~~GDv~~vP~G~~h~~~n~~~~~  113 (170)
T d1uija1          91 HPGDAQRIPAGTTYYLVNPHDHQ  113 (170)
T ss_dssp             CTTEEEEECTTCEEEEEECCSSC
T ss_pred             cCCcEEEECCCCeEEEEEcCCCC
Confidence            99999999999999999998643

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=98.67  E-value=5.8e-08  Score=82.12  Aligned_cols=68  Identities=18%  Similarity=0.190  Sum_probs=56.3

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eEEEecCCcEEEECCCCeEEEEEcCC-ceEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEE-TEFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~~~L~pGD~v~IP~g~~H~~~n~gd-~~~~i  283 (309)
                      ..+++.||+...+||+...+.+||++|++++.+...+  .++.|++||.++||+|.+|.+.|.++ ..+.+
T Consensus        44 ~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~h~~~N~~~~e~l~i  114 (178)
T d1dgwa_          44 LEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRI  114 (178)
T ss_dssp             EEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEE
T ss_pred             EEEEecCCcccccccCCCCEEEEEEEeEEEEEEecCCceEEEEecCCCEEEECCCCeEEEEECCCCCCEEE
Confidence            4568999999999976677789999999999765443  56899999999999999999999875 34443

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.67  E-value=6.1e-08  Score=81.71  Aligned_cols=68  Identities=18%  Similarity=0.116  Sum_probs=55.1

Q ss_pred             EEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeCC--eE--EEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTKG--ER--FDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~~--~~--~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      ..+.+.||+...+|||+.. +++||++|++++++...+  +.  ..|++||.++||+|.+|...|.++...++
T Consensus        50 ~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv~~iP~G~~h~~~n~~~~~~~v  122 (173)
T d1od5a2          50 QYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQGLEYV  122 (173)
T ss_dssp             EEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEEEECTTCEEEEEEEEEEEEEE
T ss_pred             EEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCcEEEECCCCEEEEEcCCCceEEE
Confidence            6789999999999999765 669999999999765333  33  45999999999999999998866544443

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.67  E-value=5.3e-08  Score=84.17  Aligned_cols=68  Identities=21%  Similarity=0.267  Sum_probs=57.4

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC--eEEEecCCcEEEECCCCeEEEEEcCCc-eEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEET-EFFI  283 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~--~~~~L~pGD~v~IP~g~~H~~~n~gd~-~~~i  283 (309)
                      .++++.||+...+||+...+.+||++|++.+.+...+  .++.|++||.++||+|.+|++.|.++. .+.+
T Consensus        43 ~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~~~~v~~~~~~~~~l~~GDv~~iP~G~~~~~~N~~~~e~l~i  113 (203)
T d1uika1          43 LEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRM  113 (203)
T ss_dssp             EEEEECSSEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEEE
T ss_pred             EEEEecCCCccccccCCCcEEEEEEEEEEEEEEEeCCCeEEEEecCCCEEEECCCCeEEEEECCCCccEEE
Confidence            5678999999999988888889999999999664443  569999999999999999999998864 4433

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.66  E-value=2.5e-08  Score=88.37  Aligned_cols=65  Identities=23%  Similarity=0.320  Sum_probs=56.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      .++++.||+..  |.|..++++||++|+++++  .+++++.|.+||++|+|+|+.|++.|.+++++.+.
T Consensus        53 ~~v~~~pGg~~--~~~~~E~~~~Vl~G~~~~~--~~g~~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~  117 (245)
T d1sfna_          53 FTAEMPAGAQA--TESVYQRFAFVLSGEVDVA--VGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVF  117 (245)
T ss_dssp             EEEEECTTCEE--ECCSSEEEEEEEEEEEEEE--CSSCEEEECTTEEEEECTTCCCEEEEEEEEEEEEE
T ss_pred             EEEEECCCCCC--CCCCccEEEEEEECEEEEE--ECCEEEEecCCCEEEeCCCCcEEEEeCCCccEEEE
Confidence            57889999764  5677778899999999995  46999999999999999999999999998887644

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.64  E-value=5e-08  Score=90.78  Aligned_cols=68  Identities=19%  Similarity=0.222  Sum_probs=61.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      .+..+.||...+.|+|...++.||++|+..+++ ++++.+.+.+||++++|++.+|...|.++.+++++
T Consensus        90 ~~~~l~PGe~~~~H~H~~~~~~~vi~G~g~~t~-v~g~~~~~~~GD~~~~P~~~~H~~~n~~d~~~~~l  157 (351)
T d2phda1          90 GIQYLGPRETAPEHRHSQNAFRFVVEGEGVWTV-VNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAWI  157 (351)
T ss_dssp             EEEEECTTCEEEEEEESSCEEEEEEECEEEEEE-ETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEE
T ss_pred             heEEECCCCcCCccccccceeEEEEECCcEEEE-ECCEEEEEeCCCEEEeCCCceEEEEEcCCCCEEEE
Confidence            678899999999999999999999999987653 57999999999999999999999999998877644

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.58  E-value=8.9e-08  Score=89.29  Aligned_cols=63  Identities=25%  Similarity=0.295  Sum_probs=58.1

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      ....++||....+|+|...+.+||++|+++++  ++++++.+.+||++++|++..|+..|.++++
T Consensus       259 ~~~~l~pG~~~~~hrH~~~~v~~v~~G~g~~~--i~g~~~~~~~GDv~~vP~~~~h~~~N~s~~e  321 (355)
T d3bu7a1         259 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSI--VGGKRFDWSEHDIFCVPAWTWHEHCNTQERD  321 (355)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEECCEEEE--ETTEEEEECTTCEEEECTTCCEEEEECCSSC
T ss_pred             EEEEECCCCccCCcCccCcEEEEEEECcEEEE--ECCEEEEeeCCCEEEeCCCCcEEeecCCCCC
Confidence            56789999999999999999999999999995  4699999999999999999999999998754

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.56  E-value=8.4e-08  Score=90.00  Aligned_cols=87  Identities=30%  Similarity=0.474  Sum_probs=65.8

Q ss_pred             ecCCceEEEe--eeCCC-----eEEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee-CCe--EEEecCCcEEEECCCC
Q 021654          200 MIPGGSMKII--RESPT-----SAIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT-KGE--RFDLTVGDYLFTPAGD  269 (309)
Q Consensus       200 ~~pgg~~~il--~~~~~-----~~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~-~~~--~~~L~pGD~v~IP~g~  269 (309)
                      +..||..+.+  ..-|.     ...+++.||...++|||+..|+.||++|++++++.. +++  ...|++||.+++|+|.
T Consensus        52 ~~~gg~~r~~~~~~lp~~~~~a~~~~~L~pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~  131 (372)
T d1j58a_          52 LEKGGYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGL  131 (372)
T ss_dssp             EETTEEEEEECTTTCTTCSSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTC
T ss_pred             ccCCCeeEEeehhhChhhhhhhheEEEECCCcCcCCcccCcccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEECCCC
Confidence            4566766643  22232     256899999999999999999999999999997642 334  3469999999999999


Q ss_pred             eEEEEEcCC-ceEEEEEc
Q 021654          270 VHRVKYYEE-TEFFIKWD  286 (309)
Q Consensus       270 ~H~~~n~gd-~~~~i~~~  286 (309)
                      +|.+.|.++ +++++.++
T Consensus       132 ~H~i~n~~dg~e~l~vf~  149 (372)
T d1j58a_         132 PHSIQALEEGAEFLLVFD  149 (372)
T ss_dssp             CEEEEEEEEEEEEEEEES
T ss_pred             EEEEEeCCCCcEEEEEEC
Confidence            999999764 44554444

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.56  E-value=1.3e-07  Score=78.90  Aligned_cols=69  Identities=22%  Similarity=0.210  Sum_probs=56.9

Q ss_pred             EEEEEcCCCcCCCeecCCce-EEEEEecEEEEEEeeC-Ce---------EEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGH-DLVVLQGKKSVWNLTK-GE---------RFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e-~vyVlsG~l~v~i~~~-~~---------~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ..+++.||+...+|||+... ++||++|++++++... ++         ...|++||.++||+|.+|...|.++.+++..
T Consensus        23 ~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~~~~v~~  102 (162)
T d2phla2          23 SSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGF  102 (162)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSSEEEEEE
T ss_pred             EEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCCCceEEEE
Confidence            56889999999999999765 5999999999976421 11         3579999999999999999999988776544

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=1.5e-07  Score=85.67  Aligned_cols=67  Identities=15%  Similarity=0.152  Sum_probs=59.9

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      ....++||...+.|+|...+.+||++|+++++  ++++++.+.|||++++|++..|+..|.++..++..
T Consensus       225 ~~~~l~pG~~~~~h~h~~~~~~~v~~G~g~~~--v~~~~~~~~~GD~~~vP~~~~h~~~~~~d~~l~~v  291 (308)
T d2d40a1         225 FLQLLPKGFASRVARTTDSTIYHVVEGSGQVI--IGNETFSFSAKDIFVVPTWHGVSFQTTQDSVLFSF  291 (308)
T ss_dssp             EEEEECTTCBCCCBEESSCEEEEEEEEEEEEE--ETTEEEEEETTCEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEEEccCCCccCCccCChheEEEEEeCcEEEE--ECCEEEEEeCCCEEEeCCCCeEEEEcCCCeEEEEE
Confidence            56789999999999999999999999999995  46999999999999999999999999887666533

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.51  E-value=2.4e-07  Score=78.69  Aligned_cols=68  Identities=22%  Similarity=0.292  Sum_probs=56.4

Q ss_pred             EEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEeeCC-----------------eEEEecCCcEEEECCCCeEEEEEcC
Q 021654          216 AIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLTKG-----------------ERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~~~-----------------~~~~L~pGD~v~IP~g~~H~~~n~g  277 (309)
                      ..+++.||+...+|||+.. +++||++|++.+.+...+                 .++.|++||.++||+|.+|...|.+
T Consensus        45 ~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~  124 (185)
T d1uika2          45 SVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATS  124 (185)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC------------CBCCEEEEEEECTTCEEEECTTCCEEEEESS
T ss_pred             heeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCccchhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCC
Confidence            5678999999999999765 569999999999764322                 2578999999999999999999998


Q ss_pred             CceEEE
Q 021654          278 ETEFFI  283 (309)
Q Consensus       278 d~~~~i  283 (309)
                      +..++.
T Consensus       125 d~~~v~  130 (185)
T d1uika2         125 DLNFFA  130 (185)
T ss_dssp             SEEEEE
T ss_pred             CccEEE
Confidence            876543

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.45  E-value=2e-07  Score=86.25  Aligned_cols=69  Identities=14%  Similarity=0.014  Sum_probs=54.8

Q ss_pred             EEEEEcCCCcCCCeecC-CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          216 AIVRFKAGSVEPAHHHT-FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~-~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      ..+++.||+...+|||. ..+.+||++|++++++. ++++..|.+||+++||+|++|+++|.++..-++++
T Consensus       252 ~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~~i~-~~~~~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~~  321 (348)
T d1juha_         252 ISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQIG-DYAATELGSGDVAFIPGGVEFKYYSEAYFSKVLFV  321 (348)
T ss_dssp             EEECCCCTTSCCCCBCCSSCEEEEEEESCEEEEET-TSCCEEECTTCEEEECTTCCEEEEESSSSEEEEEE
T ss_pred             EEEEecCCCCCCCcccCCCCEEEEEEeceEEEEeC-CcceEEecCCCEEEECCCCcEEEEeCCCCcEEEEE
Confidence            45677888887777665 55569999999999653 45778999999999999999999999976654433

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.43  E-value=2.9e-07  Score=85.72  Aligned_cols=66  Identities=27%  Similarity=0.446  Sum_probs=58.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcC-CceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~  282 (309)
                      .+..+.||...+.|+|...++.||++|+..++ .++++...+.+||++++|++++|...|.+ +++++
T Consensus        88 ~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t-~v~ge~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~  154 (355)
T d3bu7a1          88 GIQTMKAGERAGAHRHAASALRFIMEGSGAYT-IVDGHKVELGANDFVLTPNGTWHEHGILESGTECI  154 (355)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEECSCEEE-EETTEEEEECTTCEEEECTTCCEEEEECTTCCCEE
T ss_pred             heEeeCCCCcCcccccccceeEEEEECCcEEE-EECCEEEEeeCCCEEEeCCCceEeeecCCCCCcEE
Confidence            57789999999999999999999999998764 35799999999999999999999999975 55654

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.37  E-value=9.2e-07  Score=82.01  Aligned_cols=65  Identities=20%  Similarity=0.304  Sum_probs=58.6

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      ....++||.....|+|...+.++|++|+++++  ++++++.+.|||.+++|++..|+..|.++..++
T Consensus       266 ~~~~l~pG~~~~~hrh~~~~v~~vi~G~g~~~--i~~~~~~~~~gDvf~vP~~~~h~~~n~~~~~Lf  330 (351)
T d2phda1         266 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVV--MNGETTKLEKGDMFVVPSWVPWSLQAETQFDLF  330 (351)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEESCEEEE--ETTEEEEECTTCEEEECTTCCEEEEESSCEEEE
T ss_pred             EEEEecCCCcCCCccccCcEEEEEEeCcEEEE--ECCEEEEEcCCCEEEeCCCCcEEEecCCCeEEE
Confidence            55678999999999999999999999999995  469999999999999999999999998776554

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.18  E-value=2.2e-06  Score=73.47  Aligned_cols=67  Identities=16%  Similarity=0.153  Sum_probs=54.8

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeE--E------EecCCcEEEECCCCeEEEEEcCC-ceEE
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER--F------DLTVGDYLFTPAGDVHRVKYYEE-TEFF  282 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~--~------~L~pGD~v~IP~g~~H~~~n~gd-~~~~  282 (309)
                      ..+++.|++..-+||++..+++||++|++.+.+...+..  +      .+++||.++||+|.+|.+.|.++ ..+.
T Consensus        45 ~~~~i~P~~l~lP~~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~~~~l~  120 (200)
T d2phla1          45 VEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDPKEDLR  120 (200)
T ss_dssp             EEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCSSCCEE
T ss_pred             EEEEecCCceeeeecCCCCEEEEEEeeeEEEEEEECCCCceeehhhccCccCCCEEEECCCCeEEEEECCCCCCEE
Confidence            567899999998888888888999999999976544432  2      48999999999999999999875 4453

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.09  E-value=7.4e-07  Score=75.21  Aligned_cols=56  Identities=18%  Similarity=0.101  Sum_probs=46.6

Q ss_pred             CCCeecCCceEEEEEecEEEEEEeeCCeE--EEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          226 EPAHHHTFGHDLVVLQGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       226 ~p~H~H~~~e~vyVlsG~l~v~i~~~~~~--~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      ...|.|+.+|..||++|++.+.+..+++.  ..+++||.+.||+|++|++....+..+
T Consensus        93 ~~EH~H~~dEvr~vv~G~g~f~v~~~d~~~~v~~~~GDli~vPag~~H~F~~~~~~~~  150 (179)
T d1zrra1          93 LNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEPNF  150 (179)
T ss_dssp             HSCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCSSC
T ss_pred             cccccCCCceEEEEEeCeEEEEEEcCCeEEEEEEcCCCEEEeCCCCeEccccCCCCCE
Confidence            36899999999999999999876655554  578999999999999999977665443

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=6.3e-06  Score=66.92  Aligned_cols=53  Identities=23%  Similarity=0.280  Sum_probs=44.9

Q ss_pred             CCeecCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEc-CCceE
Q 021654          227 PAHHHTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY-EETEF  281 (309)
Q Consensus       227 p~H~H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~-gd~~~  281 (309)
                      .+|.|+..+++||++|++.+.  ++++++.++|||.+++|||++|.+... ++.+.
T Consensus        32 Rp~g~~~Y~l~yv~~G~G~~~--i~~~~y~l~~Gdl~li~P~~~H~y~~~~~~~~w   85 (161)
T d2arca_          32 RPLGMKGYILNLTIRGQGVVK--NQGREFVCRPGDILLFPPGEIHHYGRHPEAREW   85 (161)
T ss_dssp             ETTCCSSEEEEEEEEECEEEE--ETTEEEEECTTCEEEECTTCCEEEEECTTSSEE
T ss_pred             CCCCCCCEEEEEEEEeEEEEE--ECCEEEEecCCeEEEEcCCCcEEEEeCCCCCCE
Confidence            467789999999999999995  569999999999999999999997554 44443

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.86  E-value=2.2e-05  Score=65.92  Aligned_cols=54  Identities=24%  Similarity=0.233  Sum_probs=45.3

Q ss_pred             CCeecCCceEEEEEecEEEEEEeeC-CeE--EEecCCcEEEECCCCeEEEEEcCCce
Q 021654          227 PAHHHTFGHDLVVLQGKKSVWNLTK-GER--FDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       227 p~H~H~~~e~vyVlsG~l~v~i~~~-~~~--~~L~pGD~v~IP~g~~H~~~n~gd~~  280 (309)
                      ..|.|+.+|..||++|++.+.+... ++.  ..+.+||.+++|+|+.|++....+..
T Consensus        86 ~EH~H~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~~~  142 (179)
T d1vr3a1          86 EEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNY  142 (179)
T ss_dssp             SCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCC
T ss_pred             hceeCCCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCCCC
Confidence            6899999999999999999987543 333  56789999999999999998876543

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=97.85  E-value=2.8e-05  Score=68.26  Aligned_cols=70  Identities=13%  Similarity=0.152  Sum_probs=59.3

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeC-------------------------CeEEEecCCcEEEECCCCe
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK-------------------------GERFDLTVGDYLFTPAGDV  270 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~-------------------------~~~~~L~pGD~v~IP~g~~  270 (309)
                      ...++.|++..-+|+.....++||++|+..+.+...                         .+.+.|.+||.+.||+|++
T Consensus        42 ~r~~I~p~gL~lP~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~  121 (239)
T d1fxza1          42 SRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVA  121 (239)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEEECTTCE
T ss_pred             heeeeccCceecceecCCCeEEEEEeCEEEEEEecCCChhhhcccccccccccccccchhhhhhhccccCCEEEecCCce
Confidence            567889999887887888899999999999976422                         2447999999999999999


Q ss_pred             EEEEEcCCceEEEEE
Q 021654          271 HRVKYYEETEFFIKW  285 (309)
Q Consensus       271 H~~~n~gd~~~~i~~  285 (309)
                      |++.|.++.++++..
T Consensus       122 ~w~~N~gn~~Lv~v~  136 (239)
T d1fxza1         122 WWMYNNEDTPVVAVS  136 (239)
T ss_dssp             EEEEECSSSCEEEEE
T ss_pred             EEEEeCCCCcEEEEE
Confidence            999999999887554

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=97.82  E-value=3.2e-05  Score=68.04  Aligned_cols=70  Identities=14%  Similarity=0.133  Sum_probs=59.0

Q ss_pred             EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEeeCC----------------------------eEEEecCCcEEEECC
Q 021654          216 AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG----------------------------ERFDLTVGDYLFTPA  267 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~----------------------------~~~~L~pGD~v~IP~  267 (309)
                      ...++.|++..-+|+.....++||++|++.+.+...+                            +.+.|..||++.||+
T Consensus        42 ~r~~I~p~gL~lP~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~~~~~~~d~~qk~~rl~~GDVi~iPA  121 (245)
T d1od5a1          42 SKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNEGDVLVIPP  121 (245)
T ss_dssp             EEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC---------------EEESCEEEEETTEEEEECT
T ss_pred             EEEEEcCCccccccccCCCeEEEEEeCEEEEEEEeCCChhhhcchhhcccccccccccccccceeeeecccCCCEEEECC
Confidence            5678899999888888889999999999999775322                            234599999999999


Q ss_pred             CCeEEEEEcCCceEEEEE
Q 021654          268 GDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       268 g~~H~~~n~gd~~~~i~~  285 (309)
                      |++|++.|.++.++++..
T Consensus       122 G~~~w~yNdgn~~Lv~v~  139 (245)
T d1od5a1         122 GVPYWTYNTGDEPVVAIS  139 (245)
T ss_dssp             TCCEEEEECSSSCEEEEE
T ss_pred             CceEEEEeCCCCcEEEEE
Confidence            999999999999987543

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.45  E-value=0.00018  Score=57.30  Aligned_cols=71  Identities=15%  Similarity=0.106  Sum_probs=51.6

Q ss_pred             EEcCCCcCCCeecCC-ceEEEEEecEEEEEEeeCCe--EEEe-cCCcEEEECCCCeEEEEEcCCc-eEEEEEcCcc
Q 021654          219 RFKAGSVEPAHHHTF-GHDLVVLQGKKSVWNLTKGE--RFDL-TVGDYLFTPAGDVHRVKYYEET-EFFIKWDGRW  289 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~-~e~vyVlsG~l~v~i~~~~~--~~~L-~pGD~v~IP~g~~H~~~n~gd~-~~~i~~~~~~  289 (309)
                      ...+|....+|.|.. .++++|++|.+.+.+.....  .+.+ .+++.++||||+.|.+.+.++. .++++....+
T Consensus        38 ~~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg~~h~~~~l~~~s~ll~l~~~~y  113 (135)
T d2pa7a1          38 DTKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSDCVMMVLASDYY  113 (135)
T ss_dssp             SCCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTTCEEEEEESSCC
T ss_pred             cCCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCCEeeeEEecCCCcEEEEEcCCCC
Confidence            356778889999964 55599999999997653332  2334 7888999999999999998754 4444444444

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=97.41  E-value=0.00053  Score=56.62  Aligned_cols=61  Identities=20%  Similarity=0.189  Sum_probs=51.0

Q ss_pred             EcCCCcCCCeecCCceEEEEEecEEEEEEeeCCe--EEEecCCcEEEECCCCeEEEEEcC-Cce
Q 021654          220 FKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGE--RFDLTVGDYLFTPAGDVHRVKYYE-ETE  280 (309)
Q Consensus       220 l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~--~~~L~pGD~v~IP~g~~H~~~n~g-d~~  280 (309)
                      --|+.....|..+.+|++|-++|.+.+.+..+++  ...+++||.+++|+++||+-.-.. ++.
T Consensus        42 GGPN~R~DyH~~~~eE~FyQlkG~m~Lkv~e~g~~~di~I~EGe~fLLP~~vpHSPqR~~~~ti  105 (174)
T d1yfua1          42 GGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPEAGSA  105 (174)
T ss_dssp             CSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCCTTCE
T ss_pred             cCCcccCccccCcchhheeeeccceEEEEEeCCceEEEEcCCCcEEEeCCCCCCCcccCCCCce
Confidence            3466778899999999999999999998765554  588999999999999999987753 444

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.0017  Score=53.63  Aligned_cols=62  Identities=11%  Similarity=0.020  Sum_probs=50.7

Q ss_pred             EcCCCcCCCeecCCceEEEEEecEEEEEEeeCC----e--EEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          220 FKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKG----E--RFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       220 l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~----~--~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      --|+.....|.-+.+|++|-++|.+.+.+..++    +  ...+++||.+++|+++||+-.-..++.-
T Consensus        40 GGPN~R~DyH~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~tiG  107 (175)
T d1zvfa1          40 GGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVG  107 (175)
T ss_dssp             CSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEE
T ss_pred             cCCCcccccccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCCCCceE
Confidence            346778889999999999999999999765432    2  6779999999999999999877665543

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=97.07  E-value=0.0025  Score=53.39  Aligned_cols=76  Identities=22%  Similarity=0.279  Sum_probs=55.7

Q ss_pred             eEEEeeeCCC---e-EEEEEcCCCcCCCeecCCceEEEEEecEEEEEEee--C-------CeEEEecCCcEEEECC--CC
Q 021654          205 SMKIIRESPT---S-AIVRFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLT--K-------GERFDLTVGDYLFTPA--GD  269 (309)
Q Consensus       205 ~~~il~~~~~---~-~~~~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~--~-------~~~~~L~pGD~v~IP~--g~  269 (309)
                      ...++..++.   . ..+.+.||..+|.|-|.....+.|++|+++-++..  +       .....+.+|+..++.+  |.
T Consensus        56 ~r~lLy~d~~~~f~i~~i~W~pG~~tpiHdH~~w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~  135 (192)
T d2gm6a1          56 QQMLLHCDSAERFSIVSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGD  135 (192)
T ss_dssp             EEEEEEECTTSSCEEEEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCCCCCCCCCCCceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCc
Confidence            3445554443   1 56789999999999998877788999999875431  1       1456799999988854  57


Q ss_pred             eEEEEEcC-Cce
Q 021654          270 VHRVKYYE-ETE  280 (309)
Q Consensus       270 ~H~~~n~g-d~~  280 (309)
                      .|++.|.+ +..
T Consensus       136 IH~v~N~~~~~~  147 (192)
T d2gm6a1         136 IHRVHNAYDDRV  147 (192)
T ss_dssp             CEEEEESCSSSC
T ss_pred             eeEEecCCCCcc
Confidence            99999974 443

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.0011  Score=48.91  Aligned_cols=47  Identities=26%  Similarity=0.341  Sum_probs=39.9

Q ss_pred             cCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCC
Q 021654          231 HTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       231 H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd  278 (309)
                      .+..|+.+||+|++++.. .+++.+.+.|||.+++|+|..=.+....+
T Consensus        34 y~~~E~~~ileG~v~i~~-~~G~~~~~~aGD~~~~p~G~~~~W~v~e~   80 (88)
T d1o5ua_          34 YDTNETCYILEGKVEVTT-EDGKKYVIEKGDLVTFPKGLRCRWKVLEP   80 (88)
T ss_dssp             CSSCEEEEEEEEEEEEEE-TTCCEEEEETTCEEEECTTCEEEEEEEEE
T ss_pred             cCccEEEEEEEeEEEEEc-CCCCEEEEeCCCEEEECCCCEEEEEECce
Confidence            456788999999999964 47788999999999999999988776554

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=96.98  E-value=0.0026  Score=55.69  Aligned_cols=61  Identities=28%  Similarity=0.307  Sum_probs=49.1

Q ss_pred             EcCCCcCCCeecCCceEEEEEecEEEEEEeeC-------------------------------------CeEEEecCCcE
Q 021654          220 FKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTK-------------------------------------GERFDLTVGDY  262 (309)
Q Consensus       220 l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~-------------------------------------~~~~~L~pGD~  262 (309)
                      -.+|+..++|+.+..-++..++|+-++.+.-.                                     -...+|+|||.
T Consensus       129 ~~~g~~~~~H~D~~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGDv  208 (319)
T d1vrba1         129 AKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTM  208 (319)
T ss_dssp             ECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCE
T ss_pred             cCCCCCCccccCCCceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCCE
Confidence            34567789999888888889999999876421                                     13468999999


Q ss_pred             EEECCCCeEEEEEcCCce
Q 021654          263 LFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       263 v~IP~g~~H~~~n~gd~~  280 (309)
                      +|||+|-.|.+++.+++.
T Consensus       209 LYiP~gw~H~v~s~~~si  226 (319)
T d1vrba1         209 LYLPRGLWHSTKSDQATL  226 (319)
T ss_dssp             EEECTTCEEEEECSSCEE
T ss_pred             EEeCCCceEEeEecCCeE
Confidence            999999999999987644

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=96.83  E-value=0.005  Score=51.20  Aligned_cols=63  Identities=22%  Similarity=0.230  Sum_probs=50.8

Q ss_pred             EEEEEcCCCcCCCeecCCc-eEEEEEecEEEEEEee---C-------CeEEEecCCcEEEECCC-CeEEEEEcCC
Q 021654          216 AIVRFKAGSVEPAHHHTFG-HDLVVLQGKKSVWNLT---K-------GERFDLTVGDYLFTPAG-DVHRVKYYEE  278 (309)
Q Consensus       216 ~~~~l~pG~~~p~H~H~~~-e~vyVlsG~l~v~i~~---~-------~~~~~L~pGD~v~IP~g-~~H~~~n~gd  278 (309)
                      .++.+.||..+|.|-|+.. -++.|++|+++..+..   +       ..+..+.+|++.++++. -.|++.|.++
T Consensus        69 ~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~  143 (186)
T d3elna1          69 MILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSH  143 (186)
T ss_dssp             EEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCS
T ss_pred             EEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCC
Confidence            6789999999999999854 4589999999875531   1       14688999999998776 5999999874

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0092  Score=50.83  Aligned_cols=60  Identities=20%  Similarity=0.140  Sum_probs=50.9

Q ss_pred             EEEcCCCcCCCeecCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECC--CCeEEEEEcCC
Q 021654          218 VRFKAGSVEPAHHHTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPA--GDVHRVKYYEE  278 (309)
Q Consensus       218 ~~l~pG~~~p~H~H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~--g~~H~~~n~gd  278 (309)
                      -++.||...++|.|...|. .||++|+++-. ..-+....+.+||.-|+-+  |+.|+-.|..+
T Consensus        46 d~~~pg~gf~~HpH~g~eivT~vl~G~~~H~-DS~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~  108 (231)
T d1tq5a1          46 DVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ-DSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSS  108 (231)
T ss_dssp             EEECTTCEEEEEEECSCEEEEEEEESEEEEE-ESSSCEEEEETTCEEEEECTTCEEEEEECCCS
T ss_pred             ceecCCCCCCCCCcCCeeEEEEEEeEEEEEC-CCCCCcEEECCCcEEEEecCCcEEEEeecccc
Confidence            3789999999999999998 89999999974 4456788999999999886  57899988653

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.023  Score=43.23  Aligned_cols=59  Identities=20%  Similarity=0.353  Sum_probs=45.7

Q ss_pred             CceE--EEEEecEEEEEEeeC------CeEEEecCCcEEEECCCCeEEEEEcC-CceEEEEEcCccccccchhH
Q 021654          233 FGHD--LVVLQGKKSVWNLTK------GERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIKWDGRWDMFFDEDL  297 (309)
Q Consensus       233 ~~e~--vyVlsG~l~v~i~~~------~~~~~L~pGD~v~IP~g~~H~~~n~g-d~~~~i~~~~~~~i~~~e~~  297 (309)
                      .+-+  +.|++|++++....+      ++...+.+|+.-++||...|++...+ |..++|      ++|..++.
T Consensus        37 ~Gvwg~l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD~~f~v------~Fy~~pe~  104 (109)
T d3bb6a1          37 PGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNI------DFFVAPEV  104 (109)
T ss_dssp             TTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEE------EEEECHHH
T ss_pred             CcEEEEEEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCCCEEEEE------EEEECCcc
Confidence            4444  889999999853222      35688999999999999999999877 577764      67777663

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=95.51  E-value=0.04  Score=40.94  Aligned_cols=55  Identities=16%  Similarity=0.381  Sum_probs=42.8

Q ss_pred             eecCCceE--EEEEecEEEEEEee------CCeEEEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          229 HHHTFGHD--LVVLQGKKSVWNLT------KGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       229 H~H~~~e~--vyVlsG~l~v~i~~------~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      |.-..+-+  +.|++|++.+....      ......+.+|+.-++||...|++...+|..++|
T Consensus        28 HnTK~Gvwg~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~sdD~~f~v   90 (96)
T d3dl3a1          28 HNTAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQFNI   90 (96)
T ss_dssp             BCCCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEEEE
T ss_pred             cCCCCceEEEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEeCCCeEEEE
Confidence            33344555  88999999985321      126799999999999999999999777888875

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.028  Score=50.02  Aligned_cols=58  Identities=22%  Similarity=0.252  Sum_probs=45.3

Q ss_pred             cCCCcCCCeecCCceEEEEEecEEEEEEee--------------------------------------CCeEEEecCCcE
Q 021654          221 KAGSVEPAHHHTFGHDLVVLQGKKSVWNLT--------------------------------------KGERFDLTVGDY  262 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~--------------------------------------~~~~~~L~pGD~  262 (309)
                      .+|+.++.|.-...-++.+++|+-++.+.-                                      ..-..+|.|||.
T Consensus       177 ~~gs~t~~H~D~~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l~pGd~  256 (335)
T d1h2ka_         177 MEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDV  256 (335)
T ss_dssp             CTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEECTTCE
T ss_pred             CCCCCCccccccccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEECCCCE
Confidence            456777888766666688999999886530                                      013468999999


Q ss_pred             EEECCCCeEEEEEcCC
Q 021654          263 LFTPAGDVHRVKYYEE  278 (309)
Q Consensus       263 v~IP~g~~H~~~n~gd  278 (309)
                      +|||++-.|.++|.++
T Consensus       257 L~iP~~w~H~V~~~~~  272 (335)
T d1h2ka_         257 LYIPMYWWHHIESLLN  272 (335)
T ss_dssp             EEECTTCEEEEEECTT
T ss_pred             EeeCCCCeEEEEEcCC
Confidence            9999999999999865

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.72  E-value=0.07  Score=43.63  Aligned_cols=65  Identities=20%  Similarity=0.243  Sum_probs=46.8

Q ss_pred             cCCCcCCCeec----CCceEEEEEecEEEEEEeeC-------C--eEEEec--CCcEEEECCCCeEEEEEcCCceEEEEE
Q 021654          221 KAGSVEPAHHH----TFGHDLVVLQGKKSVWNLTK-------G--ERFDLT--VGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       221 ~pG~~~p~H~H----~~~e~vyVlsG~l~v~i~~~-------~--~~~~L~--pGD~v~IP~g~~H~~~n~gd~~~~i~~  285 (309)
                      .+|....+|.|    .+...++|++|++...+..-       +  ..+.|.  .+..++||+|..|.+...++...++..
T Consensus        53 ~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~~i~Y~  132 (176)
T d1wlta1          53 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDVAVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYFI  132 (176)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEEE
T ss_pred             chheeeecccccccCCccEEEEEeccceEEEEEeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccccceEEEe
Confidence            67877889987    23446999999999754211       1  245565  455999999999999999976655433

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.52  E-value=0.1  Score=43.46  Aligned_cols=64  Identities=13%  Similarity=0.138  Sum_probs=47.2

Q ss_pred             cCCCcCCCeec----CCceEEEEEecEEEEEEeeC-------C--eEEEecCC--cEEEECCCCeEEEEEcCCceEEEE
Q 021654          221 KAGSVEPAHHH----TFGHDLVVLQGKKSVWNLTK-------G--ERFDLTVG--DYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H----~~~e~vyVlsG~l~v~i~~~-------~--~~~~L~pG--D~v~IP~g~~H~~~n~gd~~~~i~  284 (309)
                      .+|....+|.|    ++..+++|++|++...+..-       +  ..+.|...  ..++||+|..|.+...++...++.
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i~Y  132 (198)
T d2ixca1          54 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVVVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVMY  132 (198)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEEEECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEEE
T ss_pred             ehhhheeeeeecccchhhhhhhhhhceEEEEEEecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCcceeec
Confidence            57877889976    35566999999999865211       1  24677664  499999999999999987554433

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.47  E-value=0.08  Score=43.57  Aligned_cols=62  Identities=19%  Similarity=0.193  Sum_probs=46.4

Q ss_pred             cCCCcCCCeecC----CceEEEEEecEEEEEEeeC-------C--eEEEecCC--cEEEECCCCeEEEEEcCCceEE
Q 021654          221 KAGSVEPAHHHT----FGHDLVVLQGKKSVWNLTK-------G--ERFDLTVG--DYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVlsG~l~v~i~~~-------~--~~~~L~pG--D~v~IP~g~~H~~~n~gd~~~~  282 (309)
                      .+|....+|.|.    +...++|++|.+...+..-       +  ..+.|.+.  ..++||+|..|.+...++...+
T Consensus        55 ~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvvvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i  131 (183)
T d1dzra_          55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEF  131 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEE
T ss_pred             ccceeEEEEecccccchhhheeeccccEEEEEEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceE
Confidence            578888999774    4566999999999754211       1  34777664  5999999999999999875543

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=94.06  E-value=0.074  Score=44.21  Aligned_cols=68  Identities=10%  Similarity=0.058  Sum_probs=50.3

Q ss_pred             cCCCcCCCeecCCceEEEEE-ecEEEEEEeeCC--------eEEEecCCcEEEECCCCeEEEEEcCCceE-EEEEcCc
Q 021654          221 KAGSVEPAHHHTFGHDLVVL-QGKKSVWNLTKG--------ERFDLTVGDYLFTPAGDVHRVKYYEETEF-FIKWDGR  288 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVl-sG~l~v~i~~~~--------~~~~L~pGD~v~IP~g~~H~~~n~gd~~~-~i~~~~~  288 (309)
                      .+|....+|.|++...++++ .|.+...+..-.        ....|..+..+|||+|..|.+...++... .......
T Consensus        65 ~kgvlRGlH~q~~~k~v~~~~~G~i~~V~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~Y~~s~~  142 (194)
T d1nxma_          65 RKNVLRGLHAEPWDKYISVADGGKVLGTWVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLVNDY  142 (194)
T ss_dssp             ETTBEEEEEECSSCEEEEECSSCCEEEEEEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEESSC
T ss_pred             eeeEEEEEEeccchhhhhhccccceeEEEEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEEEecCcc
Confidence            56888899999988887776 587776442111        35789999999999999999999987554 4444433

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.063  Score=46.89  Aligned_cols=63  Identities=19%  Similarity=0.068  Sum_probs=50.7

Q ss_pred             EEEcCCCcCCCeecCCceE-EEEEecE-EEEEEeeCCeEEEecCCcEEEECC--CCeEEEEEcCCceE
Q 021654          218 VRFKAGSVEPAHHHTFGHD-LVVLQGK-KSVWNLTKGERFDLTVGDYLFTPA--GDVHRVKYYEETEF  281 (309)
Q Consensus       218 ~~l~pG~~~p~H~H~~~e~-vyVlsG~-l~v~i~~~~~~~~L~pGD~v~IP~--g~~H~~~n~gd~~~  281 (309)
                      +...++..+++|.|...|. .|+++|. ++-. ..-+..-.+++||.-|+-+  |+.|+-.|.++.++
T Consensus        43 ~~~~~~~gf~~HPH~g~e~vTy~~~G~~~~H~-Ds~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~  109 (288)
T d1j1la_          43 FKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE-DFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPA  109 (288)
T ss_dssp             EEECTTCBEEEEEEBSEEEEEEECSSSCEEEE-ETTSCEEEECTTCEEEEECTTCEEEEEEECSSSCE
T ss_pred             CcCCCCCCCCCCCcCCeEEEEEEEeCCeEEEe-cCCCCeeEecCCCEEEEecccceEecccccccccc
Confidence            4667778889999999998 7999985 6553 4457889999999999987  57899999876654

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.34  E-value=0.2  Score=44.25  Aligned_cols=50  Identities=16%  Similarity=0.136  Sum_probs=38.1

Q ss_pred             CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeE-EEEEcCCceEEEEE
Q 021654          232 TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVH-RVKYYEETEFFIKW  285 (309)
Q Consensus       232 ~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H-~~~n~gd~~~~i~~  285 (309)
                      .....++|++|++++.  .+++++.|++|++++||++... .+.  |+..+++.+
T Consensus       264 ~~~~il~vi~G~~~i~--~~~~~~~l~~G~~~~ipa~~~~~~i~--G~~~ll~a~  314 (315)
T d1qwra_         264 ESFLICSVIEGSGLLK--YEDKTCPLKKGDHFILPAQMPDFTIK--GTCTLIVSH  314 (315)
T ss_dssp             SSCEEEEEEEEEEEEE--ETTEEEEEETTCEEEECTTCCCEEEE--EEEEEEEEE
T ss_pred             CCcEEEEEEeCeEEEE--ECCEEEEEecCcEEEEECCCCCEEEE--eeEEEEEEE
Confidence            3456789999999994  4688999999999999998753 343  556665544

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.33  E-value=0.18  Score=41.40  Aligned_cols=63  Identities=17%  Similarity=0.148  Sum_probs=45.5

Q ss_pred             cCCCcCCCeec---CCceEEEEEecEEEEEEee---------CCeEEEecC--CcEEEECCCCeEEEEEcCCceEEE
Q 021654          221 KAGSVEPAHHH---TFGHDLVVLQGKKSVWNLT---------KGERFDLTV--GDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       221 ~pG~~~p~H~H---~~~e~vyVlsG~l~v~i~~---------~~~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      .+|....+|.|   ++...++|++|++...+..         .-....|.+  +..++||+|..|.+...++...++
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dvvvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~~~v~  133 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDVAVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFL  133 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEE
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEEEeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCceEEE
Confidence            56777788864   3456699999999864321         113467776  458999999999999998755443

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=93.31  E-value=0.21  Score=41.18  Aligned_cols=67  Identities=13%  Similarity=0.039  Sum_probs=47.0

Q ss_pred             cCCCcCCCeec----CCceEEEEEecEEEEEEeeC-------Ce--EEEe--cCCcEEEECCCCeEEEEEcCCceE-EEE
Q 021654          221 KAGSVEPAHHH----TFGHDLVVLQGKKSVWNLTK-------GE--RFDL--TVGDYLFTPAGDVHRVKYYEETEF-FIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H----~~~e~vyVlsG~l~v~i~~~-------~~--~~~L--~pGD~v~IP~g~~H~~~n~gd~~~-~i~  284 (309)
                      .+|....+|.|    .+..+++|++|++...+..-       ++  ...|  ..+..++||+|..|.+...++... ...
T Consensus        54 ~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~Y~  133 (190)
T d2c0za1          54 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVVVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCYL  133 (190)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEEEEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             hhhheeeeeecccccchhheeeeeeeeEEEEEEeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeEEe
Confidence            57777789965    35567999999999754211       11  2344  577899999999999999876444 444


Q ss_pred             EcC
Q 021654          285 WDG  287 (309)
Q Consensus       285 ~~~  287 (309)
                      ..+
T Consensus       134 ~s~  136 (190)
T d2c0za1         134 SSG  136 (190)
T ss_dssp             ESS
T ss_pred             cCC
Confidence            333

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.11  E-value=0.19  Score=41.18  Aligned_cols=67  Identities=18%  Similarity=0.183  Sum_probs=47.3

Q ss_pred             cCCCcCCCeec---CCceEEEEEecEEEEEEeeC-------C--eEEEecCC--cEEEECCCCeEEEEEcCCceE-EEEE
Q 021654          221 KAGSVEPAHHH---TFGHDLVVLQGKKSVWNLTK-------G--ERFDLTVG--DYLFTPAGDVHRVKYYEETEF-FIKW  285 (309)
Q Consensus       221 ~pG~~~p~H~H---~~~e~vyVlsG~l~v~i~~~-------~--~~~~L~pG--D~v~IP~g~~H~~~n~gd~~~-~i~~  285 (309)
                      .+|....+|.|   ++..+++|++|++...+..-       +  ..+.|.+.  ..++||+|..|.+...++... ....
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~~  133 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKC  133 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEEE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEEEEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCceEEEEec
Confidence            56777788876   34667999999999754311       1  23567664  589999999999999887554 4444


Q ss_pred             cC
Q 021654          286 DG  287 (309)
Q Consensus       286 ~~  287 (309)
                      .+
T Consensus       134 s~  135 (183)
T d1ep0a_         134 TE  135 (183)
T ss_dssp             SS
T ss_pred             cC
Confidence            44

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.13  Score=47.77  Aligned_cols=54  Identities=15%  Similarity=0.104  Sum_probs=44.6

Q ss_pred             cCCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceEEEEEc
Q 021654          231 HTFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       231 H~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~~i~~~  286 (309)
                      ...++++||-+|++.++  +.=....++|||+++||.|+.+++.-.++...+++=.
T Consensus       149 ADGDeLi~~~~Gsg~l~--TefG~L~v~pGDyvVIPRG~~frv~~~~~~r~yiiE~  202 (439)
T d1eyba_         149 SDGDFLIVPQKGNLLIY--TEFGKMLVQPNEICVIQRGMRFSIDVFEETRGYILEV  202 (439)
T ss_dssp             SSEEEEEEEEESCEEEE--ETTEEEEECTTEEEEECTTCCEEEECSSSEEEEEEEE
T ss_pred             CCCCEEEEEEeCcEEEE--EeeeEEEecCCcEEEecCceEEEEecCCCceEEEEee
Confidence            45667799999999994  4567899999999999999999998877776665543

>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: MoaB
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.2  Score=40.27  Aligned_cols=125  Identities=21%  Similarity=0.169  Sum_probs=71.5

Q ss_pred             CCcEEEE--EeCcccHH---HHHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhh
Q 021654           11 HPLKIIA--GADSFGAE---LKDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVA   83 (309)
Q Consensus        11 ~~mki~i--~~D~~g~~---lk~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~   83 (309)
                      +++||+|  -||..|..   =-..|.+.|++.|++|++++.  +++......+.+...+    +.+|.-|.--|||.|--
T Consensus         7 ~p~rvaiitvsD~~g~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd~~~~~~~l~~~~~~----~~~dlIiTtGGtg~g~~   82 (170)
T d1mkza_           7 IPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIAS----DDVQVVLITGGTGLTEG   82 (170)
T ss_dssp             CCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHS----SSCCEEEEESCCSSSTT
T ss_pred             CCceEEEEEEcCCCCcCCCChHHHHHHHHHHCCCEEEEeeeeCCCHHHHHHHHHhhhhc----ccceEEEEeeeeccccc
Confidence            4566554  46876652   224788899999999999986  4556666666666666    56666555566665421


Q ss_pred             ----hhhcCCCceEEEEeCC----------HHHHHH----hHhhcCceEeEeccccCCHHHHHH-HHHHHHcCCC
Q 021654           84 ----IFANKNPGVFATTCLT----------PADALN----TRSINNCNVLAVSGMSTSKESAVE-ILDTWLKTPF  139 (309)
Q Consensus        84 ----iaaNK~~giraa~~~~----------~~~A~~----~r~hN~aNvl~lg~~~~~~~~a~~-i~~~~l~~~f  139 (309)
                          -+..++-..+.--...          ...+-+    +...++.-|++|++.-.+...+.+ ++.-+|+.-.
T Consensus        83 D~t~ea~~~~~~~~~~g~~~~~~~~s~~~~~p~~~~sr~~aG~~~~tli~~LPGnP~aa~~~~~~lv~P~L~~~~  157 (170)
T d1mkza_          83 DQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQLDART  157 (170)
T ss_dssp             CCHHHHHGGGCSEECHHHHHHHHHHHHHHHGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHHCTTC
T ss_pred             cccHHHHHhhhhhhhhhhhHHhhhcccceeccccccccccccccCCEEEEECCCCHHHHHHHHHHHHHHHHHhcc
Confidence                1111111110000000          000111    124488899999999887666653 5666776533

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=92.47  E-value=0.32  Score=40.39  Aligned_cols=64  Identities=17%  Similarity=0.168  Sum_probs=46.1

Q ss_pred             EcCCCcCCCeecC----CceEEEEEecEEEEEEee-------CC--eEEEecC--CcEEEECCCCeEEEEEcCCceEEE
Q 021654          220 FKAGSVEPAHHHT----FGHDLVVLQGKKSVWNLT-------KG--ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       220 l~pG~~~p~H~H~----~~e~vyVlsG~l~v~i~~-------~~--~~~~L~p--GD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      -.+|....+|.|.    +...++|++|++...+..       -+  ..+.|..  +..+|||+|..|.+...++...++
T Consensus        54 s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v~  132 (202)
T d1oi6a_          54 SKRGVVRGIHYTVTPPGTAKYVYCARGKAMDIVIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMS  132 (202)
T ss_dssp             ECTTBEEEEEEECTTTCCCEEEEEEESCEEEEEECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEE
T ss_pred             chhheeeeeeecccccchhheeeeccccEEEEEEecccCCCccceeeeeecccccceeEEeccceeEEEeeccccceeE
Confidence            3567777899773    456699999999985521       12  2355664  458999999999999998665543

>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: MoaB
species: Bacillus cereus [TaxId: 1396]

Probab=92.21  E-value=0.12  Score=40.72  Aligned_cols=64  Identities=22%  Similarity=0.159  Sum_probs=49.1

Q ss_pred             EEEEeCcccHH---HHHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhh
Q 021654           15 IIAGADSFGAE---LKDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGV   82 (309)
Q Consensus        15 i~i~~D~~g~~---lk~~l~~~l~~~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~   82 (309)
                      |+.-||-+|.+   --..|.+.|++.|++|++++.  +++..+...+.+....    ..+|.-|.-.|||.|-
T Consensus         7 vitvsd~~~~~~D~ngp~L~~~l~~~G~~v~~~~iv~D~~~~i~~~l~~~~~~----~~~DlIvTtGGts~g~   75 (155)
T d1y5ea1           7 IVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHK----EDVDVVLTNGGTGITK   75 (155)
T ss_dssp             EEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTC----TTCSEEEEECCCSSST
T ss_pred             EEEEeCCCCCCcCccHHHHHHHHHhcCCEEEEeeeecchHHHHHHHHHHHHhc----cCCCEEEEeeeeeccc
Confidence            56668888762   445889999999999999996  4566676667666655    6788999999998883

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=92.06  E-value=0.55  Score=36.34  Aligned_cols=126  Identities=13%  Similarity=0.100  Sum_probs=72.0

Q ss_pred             cEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654           13 LKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN   89 (309)
Q Consensus        13 mki~i~~---D~~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~   89 (309)
                      -||++++   |.=... +..+...|+..||+|+|+|.+.-++--...++..       ..|.-.+=+..+-.+..     
T Consensus         4 ~kVvi~~~~gD~H~lG-~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~-------~~d~v~lS~~~~~~~~~-----   70 (137)
T d1ccwa_           4 KTIVLGVIGSDCHAVG-NKILDHAFTNAGFNVVNIGVLSPQELFIKAAIET-------KADAILVSSLYGQGEID-----   70 (137)
T ss_dssp             CEEEEEEETTCCCCHH-HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH-------TCSEEEEEECSSTHHHH-----
T ss_pred             CEEEEEecCCChhHHH-HHHHHHHHHHCCCeEEecccccCHHHHHHHHHhc-------CCCEEEEeeccccchHH-----
Confidence            3777764   555555 5688889999999999999864443223333332       23333333333322211     


Q ss_pred             CceEEEEeCCHHHHHHhHhhcCceE-eEeccc-cCCHHHHHHHHHHHHcCCCCCCCCCCCCChhhhhhhhhhhhcc
Q 021654           90 PGVFATTCLTPADALNTRSINNCNV-LAVSGM-STSKESAVEILDTWLKTPFKAPCPASGFKPWEENISCFFDKSM  163 (309)
Q Consensus        90 ~giraa~~~~~~~A~~~r~hN~aNv-l~lg~~-~~~~~~a~~i~~~~l~~~f~~~~p~~~~~~~~~~I~~fl~~sl  163 (309)
                             ..+  ...+.|+-+..|| +..|+. +++.....++.+.|-+-.|..-|+++...   +++.+++++.+
T Consensus        71 -------~~~--~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~if~~~t~~---~~~~~~l~~~l  134 (137)
T d1ccwa_          71 -------CKG--LRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPP---EVGIADLKKDL  134 (137)
T ss_dssp             -------HTT--HHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCH---HHHHHHHHHHH
T ss_pred             -------HHH--HHHHHHHhccCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEEECCCCCH---HHHHHHHHHHh
Confidence                   112  2233344443444 334444 45666677788888887788777776544   56666666544

>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglucomutase, first 3 domains
superfamily: Phosphoglucomutase, first 3 domains
family: Phosphoglucomutase, first 3 domains
domain: Phosphomannomutase/phosphoglucomutase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.92  E-value=0.92  Score=35.24  Aligned_cols=96  Identities=19%  Similarity=0.252  Sum_probs=64.6

Q ss_pred             CcEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhhhcCC
Q 021654           12 PLKIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIFANKN   89 (309)
Q Consensus        12 ~mki~i~~D~--~g~~lk~~l~~~l~~~g~ev~d~G~~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~iaaNK~   89 (309)
                      ..+|+||.|.  .+-.+++.+.+-|.+.|.+|+|+|.-.-|.+...+    ..    ..++.||.|=.|           
T Consensus        40 ~~~VvIg~D~R~ss~~~~~~~~~gl~~~G~~V~~~g~~pTP~l~~~~----~~----~~~~~GI~ITAS-----------  100 (146)
T d1p5dx1          40 EPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAA----NV----LEGKSGVMLTGS-----------  100 (146)
T ss_dssp             CCEEEEEECSCTTHHHHHHHHHHHHHTBTCEEEEEEECCHHHHHHHH----HH----SSCSEEEEECCT-----------
T ss_pred             CCEEEEEECCccchhhhhhhhheeeccCceEEEeccccccHHHHHHH----Hh----hccCceeEEeec-----------
Confidence            3579999996  45679999999999999999999976545444443    33    456778877433           


Q ss_pred             CceEEEEeCCHHHHHHhHhhcCceEeEeccccCCHHHHHHHHHHHHcCCCCC
Q 021654           90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKA  141 (309)
Q Consensus        90 ~giraa~~~~~~~A~~~r~hN~aNvl~lg~~~~~~~~a~~i~~~~l~~~f~~  141 (309)
                              |||.      ++|.--+ ...+.....+..++|.+.+.+.+|..
T Consensus       101 --------HNP~------~~NGiK~-~~~g~~~~~~~~~~i~~~~~~~~~~~  137 (146)
T d1p5dx1         101 --------HNPP------DYNGFKI-VVAGETLANEQIQALRERIEKNDLAS  137 (146)
T ss_dssp             --------TSCT------TEEEEEE-EETTEECCTHHHHHHHHHHHHTCCCC
T ss_pred             --------CCcc------ccceEEE-ecCCCccChHHHHHHHHHHhcCCccc
Confidence                    1211      1222223 34444555566778999999988863

>d2oyza1 b.82.1.22 (A:2-94) Uncharacterized protein VPA0057 {Vibrio parahaemolyticus [TaxId: 670]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: VPA0057-like
domain: Uncharacterized protein VPA0057
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=86.20  E-value=1.4  Score=31.90  Aligned_cols=49  Identities=10%  Similarity=0.181  Sum_probs=40.4

Q ss_pred             CceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCceE
Q 021654          233 FGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       233 ~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~~  281 (309)
                      ..|..-|++|++++.+....+.....+|+.+-+|++..-.++....+..
T Consensus        40 ~~E~MeivsG~l~V~lpg~~ew~~~~~G~sF~Vpans~F~ikv~~~~~Y   88 (93)
T d2oyza1          40 APERMTVVKGALVVKRVGEADWTTYSSGESFDVEGNSSFELQVKDATAY   88 (93)
T ss_dssp             SCEEEEEEESEEEEEETTCSSCEEEETTCEEEECSSEEEEEEESSCEEE
T ss_pred             CCEEEEEEeeEEEEECCCCcccEEeCCCCeEEECCCCEEEEEECcceee
Confidence            4577999999999976544566889999999999999999988766554

>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: ITPase-like
family: ITPase (Ham1)
domain: XTP pyrophosphatase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.95  E-value=0.37  Score=39.32  Aligned_cols=75  Identities=13%  Similarity=0.198  Sum_probs=52.4

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-------CCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhhh
Q 021654           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-------DYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAIF   85 (309)
Q Consensus        13 mki~i~~D~~g~~lk~~l~~~l~~~g~ev~d~G~~-------~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~ia   85 (309)
                      |||+++|=..| .+ +++++.|...|++|+.+...       ++.+.|..-++.+.+     ....-++.+-||+=+. +
T Consensus         1 MKi~~aT~N~~-K~-~E~~~lL~~~~i~v~~~~~~~~e~~~~~~~~~a~~ka~~~~~-----~~~~p~laDDSGL~vd-a   72 (186)
T d1v7ra_           1 MKIFFITSNPG-KV-REVANFLGTFGIEIVQLKHEYPEIQAEKLEDVVDFGISWLKG-----KVPEPFMIEDSGLFIE-S   72 (186)
T ss_dssp             CEEEEECSCHH-HH-HHHHHHHHTTTCEEEEECCCCCCCCCSSHHHHHHHHHHHHTT-----TSCSSEEEEEEEEEEG-G
T ss_pred             CEEEEECCCHH-HH-HHHHHHhhhcCCeEEecCccCcccccccHHHHHHHHHHHHHh-----hccceeEeccceeehh-h
Confidence            89999998877 44 45888899999999987531       355666665666654     3334567777775443 4


Q ss_pred             hcCCCceEEE
Q 021654           86 ANKNPGVFAT   95 (309)
Q Consensus        86 aNK~~giraa   95 (309)
                      .|..|||+.+
T Consensus        73 L~g~PGi~sa   82 (186)
T d1v7ra_          73 LKGFPGVYSS   82 (186)
T ss_dssp             GTTTBGGGHH
T ss_pred             hcCCcccccH
Confidence            5899999543

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.34  E-value=0.43  Score=41.76  Aligned_cols=20  Identities=25%  Similarity=0.267  Sum_probs=18.5

Q ss_pred             eEEEecCCcEEEECCCCeEE
Q 021654          253 ERFDLTVGDYLFTPAGDVHR  272 (309)
Q Consensus       253 ~~~~L~pGD~v~IP~g~~H~  272 (309)
                      ..+.++|||++|||+|++|.
T Consensus       157 n~v~v~~Gd~i~IpaGtvHA  176 (299)
T d1zx5a1         157 NTFETTPYDTFVIRPGIPHA  176 (299)
T ss_dssp             EEEECCTTCEEEECTTCCEE
T ss_pred             cEEEcccCCEEEeCCCCcEE
Confidence            35899999999999999998

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=84.97  E-value=0.38  Score=42.17  Aligned_cols=72  Identities=15%  Similarity=0.178  Sum_probs=45.3

Q ss_pred             EEEEcCCCcCCCeecCC------c---eEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEEEcCCce-EEEEEc
Q 021654          217 IVRFKAGSVEPAHHHTF------G---HDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE-FFIKWD  286 (309)
Q Consensus       217 ~~~l~pG~~~p~H~H~~------~---e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~n~gd~~-~~i~~~  286 (309)
                      .+++.||+.+++|.-..      .   -.-+.|...-.+.+.++++++.+++|.+.|+..+.+|++.|.++++ +-++++
T Consensus        95 rirL~pGg~I~pH~D~~~~~~~~~~~~RiHIPL~Tn~~~~f~v~~~~~~m~~Ge~w~~D~~~~H~v~N~sd~dRIHLViD  174 (290)
T d1e5ra_          95 RSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFHSNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQSLCVD  174 (290)
T ss_dssp             EEEEEESEEEEEECCC--------CBCCEEEECSCCTTEEEEETTEEECCCTTEEEECCTTSCEEEEESSSSCCCEEEEE
T ss_pred             eeeecCCcEecCCcCCccccccCCceEEEEEEeecCCceEEEECCEEEECCCCeEEEEcCCCeEEEECCCCCceEEEEEE
Confidence            45666788777774211      0   1122222221122245789999999999999999999999998644 334443


Q ss_pred             Cc
Q 021654          287 GR  288 (309)
Q Consensus       287 ~~  288 (309)
                      ..
T Consensus       175 ~~  176 (290)
T d1e5ra_         175 FA  176 (290)
T ss_dssp             EB
T ss_pred             ec
Confidence            33

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.94  E-value=1.4  Score=37.74  Aligned_cols=56  Identities=7%  Similarity=-0.057  Sum_probs=41.3

Q ss_pred             EEEEcCCCcCCCee-cCCceE-EEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEEEE
Q 021654          217 IVRFKAGSVEPAHH-HTFGHD-LVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK  274 (309)
Q Consensus       217 ~~~l~pG~~~p~H~-H~~~e~-vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~~~  274 (309)
                      -+.++.+....... =...|. ++.+.|..+++  ++|++|.|.+.|++|+|.|..+-..
T Consensus        56 ~l~l~~~~~~~~~~flerRElgiVnigG~g~V~--VDG~~f~l~~~D~lYvg~G~~~V~f  113 (260)
T d1ywka1          56 ELEIILDKELGVDYFLERRELGVINIGGPGFIE--IDGAKETMKKQDGYYIGKETKHVRF  113 (260)
T ss_dssp             CEECCCSGGGTSSSTTTTEEEEEEECSSCEEEE--ETTEEEEECTTCEEEECTTCCCEEE
T ss_pred             ceeccCchhccchhhhhhcEEEEEEeCCcEEEE--ECCEEEecCCCcEEEECCCCceEEE
Confidence            35566555554433 344566 88999999995  5799999999999999998865443

>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Plant CNX1 G domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.12  E-value=0.66  Score=36.80  Aligned_cols=110  Identities=15%  Similarity=0.116  Sum_probs=62.6

Q ss_pred             CcccHHHHHHHHHHHHh-CCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCCceEEEEecCchhhhh--------hhc-
Q 021654           20 DSFGAELKDALVSHLRS-LNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSDTTTRGLVACGTGVGVAI--------FAN-   87 (309)
Q Consensus        20 D~~g~~lk~~l~~~l~~-~g~ev~d~G~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~CgtG~G~~i--------aaN-   87 (309)
                      |.+|--|.+.|.+.... .||+|++++.  ++...+...+.+.+..    .++|.-|+--|||.|-.=        +.. 
T Consensus        22 D~~G~~l~~~l~~~~~~~~G~~v~~~~ivpDd~~~I~~~l~~~~~~----~~~D~IittGGtg~g~~D~T~ea~~~~~~~   97 (161)
T d1uuya_          22 DRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDV----DEMDLILTLGGTGFTPRDVTPEATKKVIER   97 (161)
T ss_dssp             CSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHT----SCCSEEEEESCCSSSTTCCHHHHHHHHCSE
T ss_pred             CCchHHHHHHHHhhccccCCcEEEEEEEECCCHHHHHHHHHHhhhc----CCceEEEEecCCCCCcccCchhheeeecce
Confidence            56664454444433222 3999999985  5677788888877766    678888888888877421        111 


Q ss_pred             CCCceEEE----EeCCHHHHHHhH----hhcCceEeEeccccCCHHHHHHHHHH
Q 021654           88 KNPGVFAT----TCLTPADALNTR----SINNCNVLAVSGMSTSKESAVEILDT  133 (309)
Q Consensus        88 K~~giraa----~~~~~~~A~~~r----~hN~aNvl~lg~~~~~~~~a~~i~~~  133 (309)
                      .++|+.=.    .-.....|.++|    ..|+.-|++|++--.+...+.+.+--
T Consensus        98 ~~~g~~~~~~~~~~~~~~~a~lsR~~~g~~~~~~if~LPG~P~a~~~~l~~i~p  151 (161)
T d1uuya_          98 ETPGLLFVMMQESLKITPFAMLARSAAGIRGSTLIINMPGNPNAVAECMEALLP  151 (161)
T ss_dssp             ECHHHHHHHHHHHHHHCGGGGGCCCCEEEETTEEEEEECSSTTHHHHHHHHHHH
T ss_pred             ecchHHHHHHHhhcCCCCcEEecccceeeECCEEEEECCCCHHHHHHHHHHHHH
Confidence            11221000    000001223333    25788899999987666665554433

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=82.80  E-value=3.3  Score=30.52  Aligned_cols=63  Identities=24%  Similarity=0.214  Sum_probs=41.3

Q ss_pred             EEcCCCcCCCeecCCceEEEEEecEEEEEEeeCCeE---EEecCCcEEEECCCCeEEEEEcCCceEEE
Q 021654          219 RFKAGSVEPAHHHTFGHDLVVLQGKKSVWNLTKGER---FDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~~e~vyVlsG~l~v~i~~~~~~---~~L~pGD~v~IP~g~~H~~~n~gd~~~~i  283 (309)
                      ++++|...-.---+....++|++|.+++....+++.   ..+.|||.+-.+  .++.+.+.+++.++.
T Consensus        26 ~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~--~~~~v~A~~~s~v~~   91 (132)
T d1ft9a2          26 IHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMH--SGCLVEATERTEVRF   91 (132)
T ss_dssp             EECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESC--SSCEEEESSCEEEEE
T ss_pred             EecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeecccccccccccc--ccccceeccceeeee
Confidence            455555442222234556899999999866555544   667899976544  466788888887753

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=82.37  E-value=0.39  Score=42.21  Aligned_cols=21  Identities=29%  Similarity=0.849  Sum_probs=18.9

Q ss_pred             eEEEecCCcEEEECCCCeEEE
Q 021654          253 ERFDLTVGDYLFTPAGDVHRV  273 (309)
Q Consensus       253 ~~~~L~pGD~v~IP~g~~H~~  273 (309)
                      ..+.|+|||++|+|+|++|.+
T Consensus       154 n~~~l~~Gd~~~ipaG~~HA~  174 (315)
T d1qwra_         154 RRIKIKPGDFYYVPSGTLHAL  174 (315)
T ss_dssp             EEEECCTTCEEEECTTCCEEE
T ss_pred             cEEEcccCCEEEeCCCCeeEe
Confidence            358999999999999999985

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.31  E-value=2.1  Score=37.05  Aligned_cols=38  Identities=21%  Similarity=0.065  Sum_probs=31.3

Q ss_pred             CCceEEEEEecEEEEEEeeCCeEEEecCCcEEEECCCCeEE
Q 021654          232 TFGHDLVVLQGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR  272 (309)
Q Consensus       232 ~~~e~vyVlsG~l~v~i~~~~~~~~L~pGD~v~IP~g~~H~  272 (309)
                      .....++|++|++++  . +++++.|++|++++||+.....
T Consensus       246 ~~~~il~~~~G~~~i--~-~~~~~~l~~G~s~~iPA~~~~~  283 (299)
T d1zx5a1         246 GVMNILYAAEGYFIL--R-GKETADLHRGYSCLVPASTDSF  283 (299)
T ss_dssp             SBCEEEEEEESCEEE--E-SSSEEEECTTCEEEECTTCCEE
T ss_pred             CceEEEEEeccEEEE--e-CCCEEEEcCCcEEEEecCCccE
Confidence            345678999999988  3 5678999999999999998753