Citrus Sinensis ID: 021661
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | 2.2.26 [Sep-21-2011] | |||||||
| Q73AY2 | 237 | Demethylmenaquinone methy | yes | no | 0.307 | 0.400 | 0.326 | 8e-05 | |
| Q81FQ6 | 237 | Demethylmenaquinone methy | yes | no | 0.307 | 0.400 | 0.326 | 9e-05 | |
| B7HHR7 | 237 | Demethylmenaquinone methy | no | no | 0.307 | 0.400 | 0.326 | 9e-05 | |
| B7IP91 | 237 | Demethylmenaquinone methy | yes | no | 0.307 | 0.400 | 0.326 | 9e-05 | |
| Q6HL42 | 237 | Demethylmenaquinone methy | yes | no | 0.307 | 0.400 | 0.326 | 0.0001 | |
| Q63DL9 | 237 | Demethylmenaquinone methy | no | no | 0.307 | 0.400 | 0.326 | 0.0001 | |
| B9IVN5 | 237 | Demethylmenaquinone methy | yes | no | 0.307 | 0.400 | 0.326 | 0.0001 | |
| B7HL23 | 237 | Demethylmenaquinone methy | yes | no | 0.307 | 0.400 | 0.326 | 0.0001 | |
| C1EN10 | 237 | Demethylmenaquinone methy | no | no | 0.307 | 0.400 | 0.326 | 0.0001 | |
| B7JGZ8 | 237 | Demethylmenaquinone methy | no | no | 0.307 | 0.400 | 0.326 | 0.0001 |
| >sp|Q73AY2|UBIE_BACC1 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain ATCC 10987) GN=ubiE PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLN 199
PG LD+C + W +Q ++VG+ +E L ++ L V+ L+ N
Sbjct: 47 PGSKALDVCCGTADWTIALAEAVGEQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGN 106
Query: 200 P-KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
+LPFEDN+FD +T + + + V KEM +V+KPGG I
Sbjct: 107 AMELPFEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVI 150
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Bacillus cereus (strain ATCC 10987) (taxid: 222523) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6EC: 3 |
| >sp|Q81FQ6|UBIE_BACCR Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLN 199
PG LD+C + W +Q ++VG+ +E L ++ L V+ L+ N
Sbjct: 47 PGSQALDVCCGTADWTIALAGAVGEQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGN 106
Query: 200 P-KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
+LPFEDN+FD +T + + + V KEM +V+KPGG I
Sbjct: 107 AMELPFEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVI 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|B7HHR7|UBIE_BACC4 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain B4264) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLN 199
PG LD+C + W +Q ++VG+ +E L ++ L V+ L+ N
Sbjct: 47 PGSQALDVCCGTADWTIALAGAVGEQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGN 106
Query: 200 P-KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
+LPFEDN+FD +T + + + V KEM +V+KPGG I
Sbjct: 107 AMELPFEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVI 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Bacillus cereus (strain B4264) (taxid: 405532) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|B7IP91|UBIE_BACC2 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain G9842) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLN 199
PG LD+C + W +Q ++VG+ +E L ++ L V+ L+ N
Sbjct: 47 PGSQALDVCCGTADWTIALAGAVGEQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGN 106
Query: 200 P-KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
+LPFEDN+FD +T + + + V KEM +V+KPGG I
Sbjct: 107 AMELPFEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVI 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Bacillus cereus (strain G9842) (taxid: 405531) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q6HL42|UBIE_BACHK Demethylmenaquinone methyltransferase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLN 199
PG LD+C + W +Q ++VG+ +E L ++ L V+ L+ N
Sbjct: 47 PGSKALDVCCGTADWTIALAGAVGEQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGN 106
Query: 200 P-KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
+LPFEDN+FD +T + + + V KEM +V+KPGG I
Sbjct: 107 AMELPFEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVI 150
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Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Bacillus thuringiensis subsp. konkukian (strain 97-27) (taxid: 281309) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|Q63DL9|UBIE_BACCZ Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain ZK / E33L) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLN 199
PG LD+C + W +Q ++VG+ +E L ++ L V+ L+ N
Sbjct: 47 PGSKALDVCCGTADWTIALAGAVGEQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGN 106
Query: 200 P-KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
+LPFEDN+FD +T + + + V KEM +V+KPGG I
Sbjct: 107 AMELPFEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVI 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Bacillus cereus (strain ZK / E33L) (taxid: 288681) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|B9IVN5|UBIE_BACCQ Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain Q1) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLN 199
PG LD+C + W +Q ++VG+ +E L ++ L V+ L+ N
Sbjct: 47 PGSKALDVCCGTADWTIALAGAVGEQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGN 106
Query: 200 P-KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
+LPFEDN+FD +T + + + V KEM +V+KPGG I
Sbjct: 107 AMELPFEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVI 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Bacillus cereus (strain Q1) (taxid: 361100) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|B7HL23|UBIE_BACC7 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain AH187) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLN 199
PG LD+C + W +Q ++VG+ +E L ++ L V+ L+ N
Sbjct: 47 PGSKALDVCCGTADWTIALAGAVGEQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGN 106
Query: 200 P-KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
+LPFEDN+FD +T + + + V KEM +V+KPGG I
Sbjct: 107 AMELPFEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVI 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Bacillus cereus (strain AH187) (taxid: 405534) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|C1EN10|UBIE_BACC3 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain 03BB102) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLN 199
PG LD+C + W +Q ++VG+ +E L ++ L V+ L+ N
Sbjct: 47 PGSKALDVCCGTADWTIALAGAVGEQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGN 106
Query: 200 P-KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
+LPFEDN+FD +T + + + V KEM +V+KPGG I
Sbjct: 107 AMELPFEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVI 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Bacillus cereus (strain 03BB102) (taxid: 572264) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
| >sp|B7JGZ8|UBIE_BACC0 Demethylmenaquinone methyltransferase OS=Bacillus cereus (strain AH820) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLN 199
PG LD+C + W +Q ++VG+ +E L ++ L V+ L+ N
Sbjct: 47 PGSKALDVCCGTADWTIALAGAVGEQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGN 106
Query: 200 P-KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
+LPFEDN+FD +T + + + V KEM +V+KPGG I
Sbjct: 107 AMELPFEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVI 150
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2). Bacillus cereus (strain AH820) (taxid: 405535) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | ||||||
| 255546163 | 303 | methyltransferase, putative [Ricinus com | 0.970 | 0.990 | 0.753 | 1e-137 | |
| 224091311 | 311 | predicted protein [Populus trichocarpa] | 0.993 | 0.987 | 0.753 | 1e-133 | |
| 449446582 | 305 | PREDICTED: uncharacterized protein LOC10 | 0.954 | 0.967 | 0.744 | 1e-131 | |
| 225444946 | 315 | PREDICTED: uncharacterized protein LOC10 | 0.844 | 0.828 | 0.830 | 1e-128 | |
| 388505360 | 304 | unknown [Lotus japonicus] | 0.867 | 0.881 | 0.784 | 1e-127 | |
| 356520871 | 301 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.993 | 0.726 | 1e-127 | |
| 357501293 | 308 | hypothetical protein MTR_6g092630 [Medic | 0.864 | 0.866 | 0.785 | 1e-125 | |
| 388492332 | 308 | unknown [Medicago truncatula] | 0.864 | 0.866 | 0.782 | 1e-124 | |
| 297799034 | 316 | hypothetical protein ARALYDRAFT_491801 [ | 0.951 | 0.930 | 0.719 | 1e-120 | |
| 15233624 | 317 | methyltransferase [Arabidopsis thaliana] | 0.941 | 0.917 | 0.725 | 1e-118 |
| >gi|255546163|ref|XP_002514141.1| methyltransferase, putative [Ricinus communis] gi|223546597|gb|EEF48095.1| methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust.
Identities = 235/312 (75%), Positives = 268/312 (85%), Gaps = 12/312 (3%)
Query: 1 MANLYRLTLQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCR---RFKASRRLVVGLGA 57
MAN L LQQ+ +S + C + S +S K+ + RFKA RRLV+GLGA
Sbjct: 1 MANFMCLKLQQK---------LSVLATVCPNHYSPLSTKAHWKLNTRFKAPRRLVLGLGA 51
Query: 58 AFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFY 117
+F +Q M+ G G S IASAR++GAVE+VLK+V+WPE+FPFKEEDFQRFDESPDSLFY
Sbjct: 52 SFWAQIMSTVGVNGGKSFIASAREKGAVEEVLKNVEWPEKFPFKEEDFQRFDESPDSLFY 111
Query: 118 ETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGM 177
E PRFVTHIDDPAIAALTKYY EVFPPSNTPGVSILD+CSSWVSH+P GYKQDRIVG GM
Sbjct: 112 EAPRFVTHIDDPAIAALTKYYREVFPPSNTPGVSILDMCSSWVSHYPKGYKQDRIVGQGM 171
Query: 178 NEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKP 237
NEEELKRNPVLTEYVVQDLN+NPKLPFEDN FDVITN VSVDYLTKP++VFKEM ++LKP
Sbjct: 172 NEEELKRNPVLTEYVVQDLNINPKLPFEDNFFDVITNTVSVDYLTKPLDVFKEMGRILKP 231
Query: 238 GGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDP 297
GGLA++SFSNRCFWTKAISIWTSTGDADH++IVG+YFHYAGG+EPPQAVDISPNPGR+DP
Sbjct: 232 GGLAVMSFSNRCFWTKAISIWTSTGDADHIVIVGSYFHYAGGFEPPQAVDISPNPGRTDP 291
Query: 298 MYVVYSRKASTA 309
MY+VYSRKAS+A
Sbjct: 292 MYIVYSRKASSA 303
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224091311|ref|XP_002309222.1| predicted protein [Populus trichocarpa] gi|222855198|gb|EEE92745.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 236/313 (75%), Positives = 266/313 (84%), Gaps = 6/313 (1%)
Query: 1 MANLYRLTLQQRHRLPPVST----GVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLG 56
M NL L Q+ RLP +++ + + ++ + VS +K + FKA RRLV+GLG
Sbjct: 1 MVNLLVLPHPQQ-RLPVLASLYPCRLPTIHTRSANSVSESQRKWNIG-FKAPRRLVLGLG 58
Query: 57 AAFCSQFMTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLF 116
A+F SQFM+MAG + LIA A+Q +E+VLK+V WP+QFPFKEEDFQRFDESPD LF
Sbjct: 59 ASFWSQFMSMAGRARSKHLIALAKQEVVIEEVLKNVDWPQQFPFKEEDFQRFDESPDLLF 118
Query: 117 YETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMG 176
Y+ PRFVTHIDDPAIAALTKYYS+VFPPSNTPGV ILD+CSSWVSHFP GYKQ IVG+G
Sbjct: 119 YDAPRFVTHIDDPAIAALTKYYSKVFPPSNTPGVCILDMCSSWVSHFPKGYKQYSIVGLG 178
Query: 177 MNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLK 236
MNEEELKRNPVLTEY VQDLNLNPKLPFEDNSFDVITN VSVDYL KPI+VFKEMC+VLK
Sbjct: 179 MNEEELKRNPVLTEYAVQDLNLNPKLPFEDNSFDVITNAVSVDYLAKPIDVFKEMCRVLK 238
Query: 237 PGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSD 296
PGGLAI+SFSNRCFWTKAISIWTSTGDADHVMIVG+YFHY+GG+EPPQAVDISPNPGRSD
Sbjct: 239 PGGLAIMSFSNRCFWTKAISIWTSTGDADHVMIVGSYFHYSGGFEPPQAVDISPNPGRSD 298
Query: 297 PMYVVYSRKASTA 309
PMYVVYSRKASTA
Sbjct: 299 PMYVVYSRKASTA 311
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446582|ref|XP_004141050.1| PREDICTED: uncharacterized protein LOC101203969 [Cucumis sativus] gi|449488025|ref|XP_004157919.1| PREDICTED: uncharacterized protein LOC101223479 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 222/298 (74%), Positives = 261/298 (87%), Gaps = 3/298 (1%)
Query: 13 HRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMTMAGTL-G 71
HR P+S S + S + + + S + + RRLV+GLG +F + FM M+G+L G
Sbjct: 10 HRGIPISLVAPSAVWSANSAATSLKRWSAGGKHR--RRLVLGLGISFWAPFMNMSGSLVG 67
Query: 72 ANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAI 131
A S +ASAR + +VE++LK+V+WPE+FPF+EEDFQRFDE+PDS FYE+PRFVTHIDDPAI
Sbjct: 68 AKSFVASARPKNSVEEILKNVEWPEKFPFREEDFQRFDETPDSYFYESPRFVTHIDDPAI 127
Query: 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEY 191
AALTK+YSEVFPPSNTPG+S+LD+CSSWVSHFP GYKQ+R+VGMGMNEEELKRN VLTEY
Sbjct: 128 AALTKFYSEVFPPSNTPGISMLDMCSSWVSHFPAGYKQERVVGMGMNEEELKRNTVLTEY 187
Query: 192 VVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFW 251
+VQDLN+NPKLPFEDNSFDVITNVVSVDYLTKP+ VFKEM +VLKPGGLAI+SFSNRCF+
Sbjct: 188 IVQDLNVNPKLPFEDNSFDVITNVVSVDYLTKPLTVFKEMSRVLKPGGLAIMSFSNRCFF 247
Query: 252 TKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKASTA 309
TKAISIWTSTGDADH+MIVG+YFHYAGG+EPPQAVDISPNPGRSDPMY+VYSRK STA
Sbjct: 248 TKAISIWTSTGDADHIMIVGSYFHYAGGFEPPQAVDISPNPGRSDPMYIVYSRKLSTA 305
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225444946|ref|XP_002282381.1| PREDICTED: uncharacterized protein LOC100268021 [Vitis vinifera] gi|297738680|emb|CBI27925.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/266 (83%), Positives = 250/266 (93%), Gaps = 5/266 (1%)
Query: 49 RRLVVGLGAAFCSQFMTMAGTLGANS--LIASARQRGA---VEQVLKDVQWPEQFPFKEE 103
RRL++GLGA+F +QF++M+G+ G L+ASARQ+GA VEQ+LK+V+WPEQFPFKEE
Sbjct: 50 RRLLLGLGASFWAQFVSMSGSGGIGGKFLVASARQQGASSPVEQILKNVEWPEQFPFKEE 109
Query: 104 DFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF 163
DFQRFDE+PDS+FYE PRFVTHIDD AIAALTKYYS+VFPPSNT GVSILD+CSSWVSHF
Sbjct: 110 DFQRFDETPDSIFYEGPRFVTHIDDQAIAALTKYYSKVFPPSNTAGVSILDMCSSWVSHF 169
Query: 164 PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223
P GYKQDR+VG+GMNEEELKRNPVLTE+VVQDLN+NPKLPFEDNSFDVITNVVSVDYLTK
Sbjct: 170 PAGYKQDRVVGLGMNEEELKRNPVLTEHVVQDLNVNPKLPFEDNSFDVITNVVSVDYLTK 229
Query: 224 PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPP 283
PI+VFKEMC++LKPGGLAI+SFSNRCFWTKAISIWTSTGDADH +IVG+YFHYAGG+EPP
Sbjct: 230 PIDVFKEMCRILKPGGLAIMSFSNRCFWTKAISIWTSTGDADHALIVGSYFHYAGGFEPP 289
Query: 284 QAVDISPNPGRSDPMYVVYSRKASTA 309
QAVDISPNPGRSDPMY+VYSRK STA
Sbjct: 290 QAVDISPNPGRSDPMYIVYSRKLSTA 315
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388505360|gb|AFK40746.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 215/274 (78%), Positives = 250/274 (91%), Gaps = 6/274 (2%)
Query: 39 KSDCRRFKASRRLVVGLGAA-FCSQFMTMAGTLGANSLIASARQRG--AVEQVLKDVQWP 95
K+ RR K RR+++G GAA F SQF+ G G S IASAR G +V+++LK+V+WP
Sbjct: 34 KNWNRRVKGPRRMLLGFGAASFLSQFV---GVSGGKSFIASARITGGPSVDEILKNVEWP 90
Query: 96 EQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDL 155
EQFPFKEEDF R+DESPD++FYE+PRFVTHIDDPAIAALTKYYS+VFPPSN+PGVSILD+
Sbjct: 91 EQFPFKEEDFLRYDESPDTMFYESPRFVTHIDDPAIAALTKYYSKVFPPSNSPGVSILDM 150
Query: 156 CSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNV 215
CSSWVSHFPPGY Q+R+VG+G+NEEELKRNPVLTEY+VQDLN+NP+LPFEDNSFD+ITNV
Sbjct: 151 CSSWVSHFPPGYSQERVVGLGLNEEELKRNPVLTEYIVQDLNVNPRLPFEDNSFDIITNV 210
Query: 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH 275
VSVDY+TKP++VFKEM ++LKPGGLAI+SFSNRCFWTKAISIWTSTGDADHVMIVG+YFH
Sbjct: 211 VSVDYITKPLDVFKEMSRILKPGGLAIMSFSNRCFWTKAISIWTSTGDADHVMIVGSYFH 270
Query: 276 YAGGYEPPQAVDISPNPGRSDPMYVVYSRKASTA 309
YAGG+EPPQAVDISPNPGRSDPMY+VYSRK STA
Sbjct: 271 YAGGFEPPQAVDISPNPGRSDPMYIVYSRKVSTA 304
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356520871|ref|XP_003529083.1| PREDICTED: uncharacterized protein LOC100786557 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust.
Identities = 226/311 (72%), Positives = 258/311 (82%), Gaps = 12/311 (3%)
Query: 1 MANLYRLTLQQRHRLPPVSTGVSSGYSTCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFC 60
M N L L R LP + ++ ST LS V KK + R K RR+++GLG +F
Sbjct: 1 MTNFVGLRLHTRLPLPVLGDVSATATSTTLS--RAVLKKWNWR-VKGPRRMLLGLGVSFL 57
Query: 61 SQFMTMAGTLGANSLIASARQRG--AVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYE 118
S MAG+ S IA AR +V+++LK+V+WP+QFPFKEEDFQRFDE+PDSLFYE
Sbjct: 58 S----MAGS---KSFIALARITAGPSVDEILKNVEWPDQFPFKEEDFQRFDETPDSLFYE 110
Query: 119 TPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMN 178
PRFVTHIDDPAIAALTKYYS+VFPPSNTPGVSILD+CSSWVSHFP GYKQ+ +VG+GMN
Sbjct: 111 APRFVTHIDDPAIAALTKYYSKVFPPSNTPGVSILDMCSSWVSHFPSGYKQELVVGLGMN 170
Query: 179 EEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPG 238
EEELK NPVLTEY VQDLN+N KLPF DNSFD+ITNVVSVDYLTKP++VFKEMC++LKPG
Sbjct: 171 EEELKGNPVLTEYAVQDLNVNTKLPFADNSFDIITNVVSVDYLTKPLDVFKEMCRILKPG 230
Query: 239 GLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPM 298
GLAI+SFSNRCFWTKAISIWTSTGDADHVMIVG+YFHYAGG+EPPQAVDISPNPGRSDPM
Sbjct: 231 GLAIMSFSNRCFWTKAISIWTSTGDADHVMIVGSYFHYAGGFEPPQAVDISPNPGRSDPM 290
Query: 299 YVVYSRKASTA 309
Y+VYSRK STA
Sbjct: 291 YIVYSRKLSTA 301
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501293|ref|XP_003620935.1| hypothetical protein MTR_6g092630 [Medicago truncatula] gi|355495950|gb|AES77153.1| hypothetical protein MTR_6g092630 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 213/271 (78%), Positives = 245/271 (90%), Gaps = 4/271 (1%)
Query: 43 RRFK-ASRRLVVGLGAA-FCSQFMTMAGTLGANSLIASARQRG--AVEQVLKDVQWPEQF 98
+ FK A RR+++G GA+ F S F+T G S IASA+ +V+Q+LK+V+WPEQF
Sbjct: 38 KTFKNAPRRMLLGFGASSFLSHFITNMSASGFKSFIASAKITAGPSVDQILKNVEWPEQF 97
Query: 99 PFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS 158
PFKEEDFQR+DES DS FYE+PRFVTHIDDPAIAALTKYYS+VFPPSNTPGVSILD+CSS
Sbjct: 98 PFKEEDFQRYDESSDSTFYESPRFVTHIDDPAIAALTKYYSKVFPPSNTPGVSILDMCSS 157
Query: 159 WVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218
WVSHFPPGYKQ+R+VG+G+NEEELKRNPVLTEY VQDLN+NPKL FEDNSFDVITNVVSV
Sbjct: 158 WVSHFPPGYKQERVVGLGLNEEELKRNPVLTEYTVQDLNVNPKLSFEDNSFDVITNVVSV 217
Query: 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAG 278
DYLTKP+++FKEM ++LKPGGLAI+SFSNRCF+TKAISIWTSTGDADHVMIVG+YFHYAG
Sbjct: 218 DYLTKPLDIFKEMNRILKPGGLAIMSFSNRCFFTKAISIWTSTGDADHVMIVGSYFHYAG 277
Query: 279 GYEPPQAVDISPNPGRSDPMYVVYSRKASTA 309
G+EPPQAVDISPNPGRSDPMY+VYSRK +TA
Sbjct: 278 GFEPPQAVDISPNPGRSDPMYIVYSRKLATA 308
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388492332|gb|AFK34232.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/271 (78%), Positives = 244/271 (90%), Gaps = 4/271 (1%)
Query: 43 RRFK-ASRRLVVGLGAA-FCSQFMTMAGTLGANSLIASARQRG--AVEQVLKDVQWPEQF 98
+ FK A RR+++G GA+ F S F+T G S IASA+ +V+Q+LK+V+WPEQF
Sbjct: 38 KTFKNAPRRMLLGFGASSFLSHFITNMSASGFKSFIASAKITAGPSVDQILKNVEWPEQF 97
Query: 99 PFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS 158
PFKEEDFQR+DES DS FYE+PRFVTHIDDPAIAALTKYYS+VFPPSNTPGVSILD+CSS
Sbjct: 98 PFKEEDFQRYDESSDSTFYESPRFVTHIDDPAIAALTKYYSKVFPPSNTPGVSILDMCSS 157
Query: 159 WVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218
WVSHFPPGYKQ+R+VG+G+NEEELKRNPVLTEY VQDLN+NPKL FEDNSFDVITNVVSV
Sbjct: 158 WVSHFPPGYKQERVVGLGLNEEELKRNPVLTEYTVQDLNVNPKLSFEDNSFDVITNVVSV 217
Query: 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAG 278
DYLTKP+++FKEM ++LKPGGLAI+SFSNRCF+TKAISIWTSTGDADHVMIVG+YFHYAG
Sbjct: 218 DYLTKPLDIFKEMNRILKPGGLAIMSFSNRCFFTKAISIWTSTGDADHVMIVGSYFHYAG 277
Query: 279 GYEPPQAVDISPNPGRSDPMYVVYSRKASTA 309
G+EPPQAVDI PNPGRSDPMY+VYSRK +TA
Sbjct: 278 GFEPPQAVDIFPNPGRSDPMYIVYSRKLATA 308
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297799034|ref|XP_002867401.1| hypothetical protein ARALYDRAFT_491801 [Arabidopsis lyrata subsp. lyrata] gi|297313237|gb|EFH43660.1| hypothetical protein ARALYDRAFT_491801 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 218/303 (71%), Positives = 246/303 (81%), Gaps = 9/303 (2%)
Query: 15 LPPV--STGVSSGY--STCLSCVSGVSKKSDCRRFKASRRLVVGLGAAFCSQFMT--MAG 68
LPP+ STG S S+ L+ + SK R + RRLV+G G + S +M M+G
Sbjct: 15 LPPIFSSTGNSPFLRASSALNLPTAASKFHRWIRASSRRRLVLG-GFSGASLWMNNNMSG 73
Query: 69 TLGANSLIASARQRGA--VEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHI 126
G S IASARQ VE+ L V WPE FPFKEEDFQRFDES DS FYE PRFVTHI
Sbjct: 74 NFGGKSFIASARQTNPSPVEEALNKVNWPETFPFKEEDFQRFDESSDSTFYEAPRFVTHI 133
Query: 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNP 186
DDP+IAALTKYYS+V P S+TPGVSILD+CSSWVSH+PPGY+Q+RIVGMGMNEEELKRNP
Sbjct: 134 DDPSIAALTKYYSKVLPQSDTPGVSILDMCSSWVSHYPPGYRQERIVGMGMNEEELKRNP 193
Query: 187 VLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246
VLTEY+VQDLNLNPKLPFEDNSF VITNVVSVDYLTKP+EVF+EM ++LKPGGLA++SFS
Sbjct: 194 VLTEYIVQDLNLNPKLPFEDNSFQVITNVVSVDYLTKPLEVFREMNRILKPGGLALMSFS 253
Query: 247 NRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKA 306
NRCF+TKAISIWTSTGD DH +IVG+YFHYAGG+E PQAVDISPNPGRSDPMYVVYSRK
Sbjct: 254 NRCFFTKAISIWTSTGDVDHALIVGSYFHYAGGFEAPQAVDISPNPGRSDPMYVVYSRKL 313
Query: 307 STA 309
A
Sbjct: 314 PMA 316
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233624|ref|NP_194688.1| methyltransferase [Arabidopsis thaliana] gi|5123553|emb|CAB45319.1| putative protein [Arabidopsis thaliana] gi|7269858|emb|CAB79717.1| putative protein [Arabidopsis thaliana] gi|332660249|gb|AEE85649.1| methyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/299 (72%), Positives = 241/299 (80%), Gaps = 8/299 (2%)
Query: 15 LPPV--STGVSSGY--STCLSCVSGVSKK-SDCRRFKASRRLVVG-LGAAFCSQFMTMAG 68
LPP+ STG S S+ L+ + SK R + RRLV+G G A M+G
Sbjct: 15 LPPIFSSTGNSPFLRASSALNLPTTASKPFHSWIRASSRRRLVLGGFGGASLWMNNNMSG 74
Query: 69 TLGANSLIASARQRGA--VEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHI 126
G S IASARQ VEQ L V WPE FPFKEEDFQR+DES DS FYE PRFVTHI
Sbjct: 75 KFGGKSFIASARQTNPSPVEQALNKVDWPETFPFKEEDFQRYDESSDSTFYEAPRFVTHI 134
Query: 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNP 186
DDPAIAALTKYYS+V P S+TPGVSILD+CSSWVSH+PPGY+Q+RIVGMGMNEEELKRNP
Sbjct: 135 DDPAIAALTKYYSKVLPQSDTPGVSILDMCSSWVSHYPPGYRQERIVGMGMNEEELKRNP 194
Query: 187 VLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246
VLTEY+VQDLNLN LPFEDNSF VITNVVSVDYLTKP+EVFKEM ++LKPGGLA++SFS
Sbjct: 195 VLTEYIVQDLNLNSNLPFEDNSFQVITNVVSVDYLTKPLEVFKEMNRILKPGGLALMSFS 254
Query: 247 NRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRK 305
NRCF+TKAISIWTSTGDADH +IVG+YFHYAGG+E PQAVDISPNPGRSDPMYVVYSRK
Sbjct: 255 NRCFFTKAISIWTSTGDADHALIVGSYFHYAGGFEAPQAVDISPNPGRSDPMYVVYSRK 313
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 309 | ||||||
| TAIR|locus:2134333 | 317 | AT4G29590 [Arabidopsis thalian | 0.941 | 0.917 | 0.725 | 8.7e-111 | |
| TAIR|locus:2084238 | 273 | AT3G01660 "AT3G01660" [Arabido | 0.618 | 0.699 | 0.415 | 1.9e-37 | |
| TIGR_CMR|BA_1534 | 237 | BA_1534 "2-heptaprenyl-1,4-nap | 0.307 | 0.400 | 0.326 | 0.0003 |
| TAIR|locus:2134333 AT4G29590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
Identities = 217/299 (72%), Positives = 241/299 (80%)
Query: 15 LPPV--STGVSSGY--STCLSCVSGVSKK-SDCRRFKASRRLVVG-LGAAFCSQFMTMAG 68
LPP+ STG S S+ L+ + SK R + RRLV+G G A M+G
Sbjct: 15 LPPIFSSTGNSPFLRASSALNLPTTASKPFHSWIRASSRRRLVLGGFGGASLWMNNNMSG 74
Query: 69 TLGANSLIASARQRGA--VEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHI 126
G S IASARQ VEQ L V WPE FPFKEEDFQR+DES DS FYE PRFVTHI
Sbjct: 75 KFGGKSFIASARQTNPSPVEQALNKVDWPETFPFKEEDFQRYDESSDSTFYEAPRFVTHI 134
Query: 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNP 186
DDPAIAALTKYYS+V P S+TPGVSILD+CSSWVSH+PPGY+Q+RIVGMGMNEEELKRNP
Sbjct: 135 DDPAIAALTKYYSKVLPQSDTPGVSILDMCSSWVSHYPPGYRQERIVGMGMNEEELKRNP 194
Query: 187 VLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246
VLTEY+VQDLNLN LPFEDNSF VITNVVSVDYLTKP+EVFKEM ++LKPGGLA++SFS
Sbjct: 195 VLTEYIVQDLNLNSNLPFEDNSFQVITNVVSVDYLTKPLEVFKEMNRILKPGGLALMSFS 254
Query: 247 NRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRK 305
NRCF+TKAISIWTSTGDADH +IVG+YFHYAGG+E PQAVDISPNPGRSDPMYVVYSRK
Sbjct: 255 NRCFFTKAISIWTSTGDADHALIVGSYFHYAGGFEAPQAVDISPNPGRSDPMYVVYSRK 313
|
|
| TAIR|locus:2084238 AT3G01660 "AT3G01660" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 81/195 (41%), Positives = 113/195 (57%)
Query: 96 EQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDL 155
++ E + + PD FY PRFV H+DD I++LT+ Y P +T +LDL
Sbjct: 46 QRLVLNNEGRTKLNADPDREFYSYPRFVNHVDDSFISSLTELYRNRLRPGST----VLDL 101
Query: 156 CSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNV 215
SSWVSH P K +++VG G+N +EL RNP L + V+DLN + K FED FD +
Sbjct: 102 MSSWVSHLPEEVKYEKVVGHGLNAQELARNPRLDYFFVKDLNEDQKFEFEDKYFDAVLCS 161
Query: 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH 275
V V YL +P +VF E+ +VLKPGG+ IVSFSNR F+ KAI +W + + +V YF
Sbjct: 162 VGVQYLQQPEKVFAEVYRVLKPGGVLIVSFSNRMFYEKAIRVWRDGTEYSRIQLVVQYFQ 221
Query: 276 YAGGYEPPQAVDISP 290
G+ P+ + P
Sbjct: 222 SIEGFTQPEIIRQQP 236
|
|
| TIGR_CMR|BA_1534 BA_1534 "2-heptaprenyl-1,4-naphthoquinone methyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 0.00030, P = 0.00030
Identities = 34/104 (32%), Positives = 52/104 (50%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEELKRNPVLTEYV----VQDLNLN 199
PG LD+C + W +Q ++VG+ +E L E + V+ L+ N
Sbjct: 47 PGSKALDVCCGTADWTIALAGAVGEQGKVVGLDFSENMLSVGKQKVEALQLKQVELLHGN 106
Query: 200 P-KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
+LPFEDN+FD +T + + + V KEM +V+KPGG I
Sbjct: 107 AMELPFEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVI 150
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 309 309 0.00079 116 3 11 22 0.39 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 3
No. of states in DFA: 618 (66 KB)
Total size of DFA: 238 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.30u 0.09s 26.39t Elapsed: 00:00:01
Total cpu time: 26.30u 0.09s 26.39t Elapsed: 00:00:01
Start: Fri May 10 05:55:34 2013 End: Fri May 10 05:55:35 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00016580001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (315 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 309 | |||
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 2e-12 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 5e-11 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 6e-09 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 9e-08 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-07 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 1e-06 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 1e-06 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 8e-06 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 4e-05 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 2e-04 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 3e-04 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 4e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 7e-04 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 0.001 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 0.003 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-12
Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 24/128 (18%)
Query: 148 PGVSILDLCS-------SWVSHFPPGYKQDRIVG----MGMNEEELKR----NPVLTEYV 192
PG +LD+ G +VG M E ++ E+V
Sbjct: 51 PGDKVLDVACGTGDMALLLAKSVGTG----EVVGLDISESMLEVAREKLKKKGVQNVEFV 106
Query: 193 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRC-F 250
V D LPF DNSFD +T + +T + KEM +VLKPGG L ++ FS
Sbjct: 107 VGDAE---NLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNP 163
Query: 251 WTKAISIW 258
+ I
Sbjct: 164 VLRKAYIL 171
|
Length = 238 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-11
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 190 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243
++VV D LPF D SFDV+ + + + +L P +E+ +VLKPGG ++
Sbjct: 42 KFVVGDAE---DLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
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Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 6e-09
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 13/53 (24%)
Query: 201 KLPFEDNSFDVIT------NVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 246
LPF DNSFD +T NV +D + +EM +VLKPGG L I+ FS
Sbjct: 114 ALPFPDNSFDAVTIAFGLRNVPDID------KALREMYRVLKPGGRLVILEFS 160
|
Length = 239 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-08
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 38/149 (25%)
Query: 148 PGVSILDLCS-------SWVSHFPPGYKQDRIVGMGMNEEEL----KRNPVLT--EYVVQ 194
G +LD+ P K + G+ + E L K++ + E++
Sbjct: 39 KGQKVLDVACGTGDLAIELAKSAPDRGK---VTGVDFSSEMLEVAKKKSELPLNIEFIQA 95
Query: 195 DLNLNPKLPFEDNSFDVIT------NVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSN 247
D LPFEDNSFD +T NV D + +EM +VLKPGG L I+ FS
Sbjct: 96 DAE---ALPFEDNSFDAVTIAFGLRNV--TDIQ----KALREMYRVLKPGGRLVILEFSK 146
Query: 248 -RCFWTKAISIWTSTGDADHVM-IVGAYF 274
K + +V+ +G
Sbjct: 147 PANALLKKFYKFYLK----NVLPSIGGLI 171
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 12/110 (10%)
Query: 147 TPGVSILDLCS--SWVSH--FPPGYKQDRIVGMGMNEE------ELKRNPVLT--EYVVQ 194
G+ +LDL +++ +VG+ ++EE E + E++
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQG 61
Query: 195 DLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244
D+ P+L EDNSFDV+ + +++L P +V +E+ +VLKPGG+ IVS
Sbjct: 62 DIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVS 111
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-06
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 17/101 (16%)
Query: 152 ILDLCS---SWVSHFPPGYKQDRIVGMGMNEEELK-------RNPVLTEYVVQDLNLNPK 201
ILDL + + G+ +++E L+ +VV D
Sbjct: 1 ILDLGCGTGRVLRALAR-AGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADAR---D 56
Query: 202 LPFEDNSFD-VITNVVSVDYLTKP--IEVFKEMCQVLKPGG 239
LPFE+ SFD VI +S+DYL+ + +E ++L+PGG
Sbjct: 57 LPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 175 MGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQV 234
GM + + +++ D KLP ED+SFD+I + +++ + + E+ +V
Sbjct: 68 AGMLAQAKTKLSENVQFICGDAE---KLPLEDSSFDLIVSNLALQWCDDLSQALSELARV 124
Query: 235 LKPGGLAIVS 244
LKPGGL S
Sbjct: 125 LKPGGLLAFS 134
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-06
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 29/110 (26%)
Query: 149 GVSILDLC---SSW-VSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNP---- 200
G S LD+C + W ++ + ++G+ +E L + V+D L+
Sbjct: 46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLS----VGRQKVKDAGLHNVELV 101
Query: 201 -----KLPFEDNSFDVIT------NVVSVDYLTKPIEVFKEMCQVLKPGG 239
+LPF+DNSFD +T NV DY+ V +EM +V+KPGG
Sbjct: 102 HGNAMELPFDDNSFDYVTIGFGLRNVP--DYMQ----VLREMYRVVKPGG 145
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 22/115 (19%)
Query: 148 PGVSILDLC---SSWVSHFPPGY-KQDRIVGMGMNEEELK--RNPVLTE--YVVQDLNLN 199
G LD+ W ++VG+ +NE LK E Y ++ L N
Sbjct: 47 RGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGN 106
Query: 200 P-KLPFEDNSFDVIT------NVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 246
+LPFED+SFD++T N DYL V KE +VLKPGG + + FS
Sbjct: 107 AEELPFEDDSFDIVTISFGLRNF--PDYLK----VLKEAFRVLKPGGRVVCLEFS 155
|
Length = 233 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 25/46 (54%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Query: 202 LPFEDNSFDVI-TNVV---SVDYLTKPIEVFKEMCQVLKPGG-LAI 242
LP DNS DVI +N V S D K VFKE +VLKPGG AI
Sbjct: 140 LPVADNSVDVIISNCVINLSPD---KE-RVFKEAFRVLKPGGRFAI 181
|
Length = 272 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244
LPF D SFD + + + +L P E+ +VL+PGG +V
Sbjct: 81 LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVL 123
|
Length = 241 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 183 KRNPVLT-EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA 241
K++P+L EY + + + SFDV+T + ++++ P + Q+LKPGG+
Sbjct: 88 KKDPLLKIEYRCTSVEDLAEKGAK--SFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGIL 145
Query: 242 IVSFSNRCFWTKAISIW 258
S NR + ++I
Sbjct: 146 FFSTINRTPKSYLLAIV 162
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 40.3 bits (91), Expect = 7e-04
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 180 EELKRNPVLTEYVVQDLNLNPKLPFED-NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPG 238
+ + V L LPFED SFD++ + V +L P + +E+ +VLKPG
Sbjct: 90 ARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLHLLPPAKALRELLRVLKPG 148
Query: 239 GLAIVSFSNR 248
G ++S R
Sbjct: 149 GRLVLSDLLR 158
|
Length = 257 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 30/139 (21%)
Query: 137 YYSEVFPPSNT-PGVSILD------LCSSWVSHFPPGYKQDRIVGMGMNEEEL------- 182
Y EV PG+ +LD + S ++ G + G+ +E+ +
Sbjct: 47 YIREVARLRFDLPGLRVLDVGCGGGILSEPLARL--GA---SVTGIDASEKPIEVAKLHA 101
Query: 183 KRNPVLTEYV---VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG 239
+ V +Y V+DL FDV+T + ++++ P + +++KPGG
Sbjct: 102 LESGVNIDYRQATVEDLA------SAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGG 155
Query: 240 LAIVSFSNRCF--WTKAIS 256
+ +S NR + AI
Sbjct: 156 ILFLSTINRTLKAYLLAII 174
|
Length = 243 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.003
Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 21/109 (19%)
Query: 152 ILDLC------SSWVSHFPPGYKQDRIVGMGMNEE--------ELKRNPVLTEYVVQDLN 197
+LDL + ++ P R+ G+ ++ E + D
Sbjct: 2 VLDLGCGTGALALALASGPGA----RVTGVDISPVALELARKAAAALLADNVEVLKGDAE 57
Query: 198 LNPKLPFEDNSFD-VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245
P P D SFD +I++ + +E ++LKPGG+ +++
Sbjct: 58 ELP--PEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTL 104
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.9 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.87 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.87 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.81 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.81 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.8 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.76 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.76 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.74 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.74 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.74 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.7 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.7 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.69 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.67 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.66 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.66 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.65 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.65 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.65 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.64 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.64 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.64 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.64 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.62 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.62 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.61 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.61 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.6 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.6 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.59 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.57 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.55 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.55 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.55 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.55 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.55 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.54 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.54 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.51 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.5 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.49 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.49 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.49 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.49 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.48 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.46 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.46 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.45 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.45 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.44 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.44 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.43 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.43 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.42 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.42 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.4 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.39 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.39 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.38 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.38 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.38 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.36 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.36 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.35 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.33 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.33 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.32 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.3 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.3 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.3 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.3 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.29 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.29 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.29 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.29 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.28 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.27 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.26 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.25 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.25 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.24 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.23 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.23 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.23 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.22 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.2 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.2 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.2 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.19 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.17 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.16 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.16 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.16 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.16 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.16 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.15 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.14 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.12 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.11 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.11 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.1 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.1 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.09 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.09 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.08 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.08 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.07 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.07 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.06 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.02 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.01 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.0 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.99 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.99 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.98 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.93 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.91 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.91 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.9 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.9 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.88 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.88 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.87 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.86 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.83 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.82 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.81 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.8 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.79 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.78 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.77 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.76 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.75 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.75 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.75 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.74 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.72 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.72 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.72 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.69 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.69 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.69 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.68 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.67 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.66 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.62 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.6 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.6 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.59 | |
| PLN02366 | 308 | spermidine synthase | 98.58 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.55 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.55 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.52 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.52 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.51 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.5 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.5 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.47 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.47 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.46 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.46 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.44 | |
| PLN02476 | 278 | O-methyltransferase | 98.43 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.4 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.37 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.35 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.35 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.31 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.27 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.26 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.25 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.21 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.2 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.19 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.19 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 98.18 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.14 | |
| PLN02823 | 336 | spermine synthase | 98.14 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.14 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.1 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.09 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.09 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.09 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.09 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.08 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.07 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.0 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.95 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.94 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 97.89 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.86 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.85 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.84 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.82 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.82 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.82 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.8 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.78 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.77 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.77 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 97.75 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.72 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.68 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.67 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.64 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.63 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.61 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.6 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.6 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.57 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.54 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.51 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.5 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.47 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.44 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.41 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.27 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.2 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.17 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.11 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.11 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.1 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.07 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.05 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.05 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.98 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 96.95 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.95 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.93 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.82 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.8 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 96.77 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.73 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.72 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.65 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 96.64 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 96.62 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.6 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.58 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.58 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.51 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.5 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.42 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 96.37 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 96.11 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 95.99 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 95.84 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 95.81 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.77 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.75 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 95.58 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.39 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.19 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.16 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 95.11 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 94.97 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 94.82 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 94.8 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 94.74 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 94.56 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 94.54 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.5 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 94.46 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.24 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 94.0 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 93.61 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 93.51 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 93.39 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 93.37 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 92.81 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 92.48 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 92.24 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 92.2 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 91.3 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 91.22 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 90.72 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 90.57 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.14 | |
| PRK13699 | 227 | putative methylase; Provisional | 90.0 | |
| PF06016 | 1289 | Reovirus_L2: Reovirus core-spike protein lambda-2 | 89.8 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 89.77 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 89.46 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 89.32 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 89.09 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 88.49 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 87.43 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 87.25 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 86.36 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 86.3 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 86.06 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 85.38 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 85.33 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 85.19 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 84.85 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 84.05 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 83.71 | |
| PHA01634 | 156 | hypothetical protein | 83.55 | |
| PF14740 | 289 | DUF4471: Domain of unknown function (DUF4471) | 82.26 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 81.72 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 81.53 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 80.76 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 80.62 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 80.6 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 80.2 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=185.78 Aligned_cols=140 Identities=28% Similarity=0.446 Sum_probs=108.8
Q ss_pred hcchhhhhhhCCCCCCCCCCChhHHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcc
Q 021661 81 QRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWV 160 (309)
Q Consensus 81 ~~~~v~~v~~~~~w~~~~p~~~e~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g 160 (309)
++..|.++|.+.+ .+||..++-+.++.++. |.+.+...+.. .++.+|||||||+|
T Consensus 9 k~~~v~~vF~~ia------------~~YD~~n~~~S~g~~~~-----------Wr~~~i~~~~~--~~g~~vLDva~GTG 63 (238)
T COG2226 9 KQEKVQKVFDKVA------------KKYDLMNDLMSFGLHRL-----------WRRALISLLGI--KPGDKVLDVACGTG 63 (238)
T ss_pred cHHHHHHHHHhhH------------HHHHhhcccccCcchHH-----------HHHHHHHhhCC--CCCCEEEEecCCcc
Confidence 3456778888777 55666555544444333 23333343332 36899999999999
Q ss_pred hhc---cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHHH
Q 021661 161 SHF---PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFK 229 (309)
Q Consensus 161 ~~~---~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~ 229 (309)
... ....+.++|+|+|+|+.||+.|+++ ++|+++|+ ++||++|++||+|+++++|++++|++++|+
T Consensus 64 d~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dA---e~LPf~D~sFD~vt~~fglrnv~d~~~aL~ 140 (238)
T COG2226 64 DMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDA---ENLPFPDNSFDAVTISFGLRNVTDIDKALK 140 (238)
T ss_pred HHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEech---hhCCCCCCccCEEEeeehhhcCCCHHHHHH
Confidence 543 3334578999999999999998764 67999999 999999999999999999999999999999
Q ss_pred HHHhhcccCcE-EEEEecCc
Q 021661 230 EMCQVLKPGGL-AIVSFSNR 248 (309)
Q Consensus 230 ~i~rvLkpGG~-lii~~~~~ 248 (309)
|++|+|||||. +++++.++
T Consensus 141 E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 141 EMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred HHHHhhcCCeEEEEEEcCCC
Confidence 99999999995 57777764
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=180.20 Aligned_cols=99 Identities=30% Similarity=0.455 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|... . ...+.++|+|+|+|++|++.|++ +++++++|+ +++|+++++||+|++
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da---~~lp~~d~sfD~v~~ 122 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDA---EDLPFPDNSFDAVTC 122 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BT---TB--S-TT-EEEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCH---HHhcCCCCceeEEEH
Confidence 45889999999999543 2 23456899999999999998875 489999999 999999999999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEE-EEEecCc
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLA-IVSFSNR 248 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~l-ii~~~~~ 248 (309)
.++|++++|+.++|+|++|+|||||.+ ++++..+
T Consensus 123 ~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 123 SFGLRNFPDRERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp ES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCC
Confidence 999999999999999999999999965 6676654
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-22 Score=174.09 Aligned_cols=167 Identities=20% Similarity=0.317 Sum_probs=131.8
Q ss_pred hhhhcccCcchhhHHHhhcchhhhhhhCCCCCCCCCCChhHHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCC
Q 021661 64 MTMAGTLGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFP 143 (309)
Q Consensus 64 ~~~~g~~~~r~~~~~~~~~~~v~~v~~~~~w~~~~p~~~e~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~ 143 (309)
.++..+|||+++.+ .+++.-|.++|.+++ .+||..+|.+....+|.| .+.+...+.
T Consensus 42 ~~~~Thfgf~tV~e-~eke~~V~~vF~~vA------------~~YD~mND~mSlGiHRlW-----------Kd~~v~~L~ 97 (296)
T KOG1540|consen 42 ASKCTHFGFKTVRE-SEKERLVHHVFESVA------------KKYDIMNDAMSLGIHRLW-----------KDMFVSKLG 97 (296)
T ss_pred ccccccccccccch-hhhhhHHHHHHHHHH------------HHHHHHHHHhhcchhHHH-----------HHHhhhccC
Confidence 34566779999988 777888999999987 678888887755555544 566666666
Q ss_pred CCCCCCCeEEEECCCcchhccC----CC-----CCCeEEEEeCCHHHHhhCCCC-----------CcEEEecCCCCCCCC
Q 021661 144 PSNTPGVSILDLCSSWVSHFPP----GY-----KQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNPKLP 203 (309)
Q Consensus 144 ~~~~~~~~ILDiGcG~g~~~~~----~~-----~~~~v~giD~S~~~l~~a~~~-----------i~~~~~D~~~~~~lp 203 (309)
+ .+++++||+|||+|..... .. ...+|+.+|+|++||..++++ +.|+++|+ ++||
T Consensus 98 p--~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA---E~Lp 172 (296)
T KOG1540|consen 98 P--GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA---EDLP 172 (296)
T ss_pred C--CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc---ccCC
Confidence 4 5679999999999943221 11 237999999999999987653 68999999 9999
Q ss_pred CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcE-EEEEecCc--chhHHHhhhhh
Q 021661 204 FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGL-AIVSFSNR--CFWTKAISIWT 259 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~-lii~~~~~--~~~~~~~~~w~ 259 (309)
|++++||..++.+.|...+|++++|+|++|+|||||. ++++++.- ..+...++.|.
T Consensus 173 Fdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ys 231 (296)
T KOG1540|consen 173 FDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYS 231 (296)
T ss_pred CCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999995 58888763 24444444443
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-19 Score=159.76 Aligned_cols=97 Identities=26% Similarity=0.384 Sum_probs=82.6
Q ss_pred CCCCeEEEECCCcchhcc---CC-CCCCeEEEEeCCHHHHhhCCC-----------CCcEEEecCCCCCCCCCCCCceeE
Q 021661 147 TPGVSILDLCSSWVSHFP---PG-YKQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~-~~~~~v~giD~S~~~l~~a~~-----------~i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
.++.+|||||||+|.... .. .+.++|+|+|+|++|++.|++ +++++++|+ +++|+++++||+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~---~~lp~~~~sfD~ 148 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA---TDLPFDDCYFDA 148 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc---ccCCCCCCCEeE
Confidence 457899999999996432 22 345799999999999998753 367999999 899999999999
Q ss_pred EEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 212 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 212 Vis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|+++++++|++++.+++++++|+|||||.+++...
T Consensus 149 V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 149 ITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred EEEecccccCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999999999999999999999999998766543
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=168.93 Aligned_cols=158 Identities=18% Similarity=0.276 Sum_probs=114.9
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||||||+|... ..+..+.+|+|+|+|++|++.|++ +++++++|+ +++++++++||+|++..
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da---e~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA---EKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH---HHhhhccCCCCEEEEhh
Confidence 35679999999999643 233457799999999999998763 377899998 88888788999999999
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEEecCcchh---H-----HHhhhhhcCCCC--ch---hHhHHHHHHHhCCCCCC
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFW---T-----KAISIWTSTGDA--DH---VMIVGAYFHYAGGYEPP 283 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~---~-----~~~~~w~~~~~~--~h---~~~~~~~f~~~~Gf~~~ 283 (309)
+|+|+.|+..+++++.++|||||.+++++.++... . ..+..|...+.. .. ..-+.+.+ ..+||+..
T Consensus 207 vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL-~~aGf~i~ 285 (322)
T PLN02396 207 VIEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMIL-QRASVDVK 285 (322)
T ss_pred HHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHH-HHcCCeEE
Confidence 99999999999999999999999999998886431 1 112233322211 11 12223334 56999988
Q ss_pred ceeeccCCCCC--------CCCcEEEEEEeCCC
Q 021661 284 QAVDISPNPGR--------SDPMYVVYSRKAST 308 (309)
Q Consensus 284 ~~~~~~~~~~~--------~~p~~~v~a~k~~~ 308 (309)
++..+.-+|.. .+--|++.++|..+
T Consensus 286 ~~~G~~~~p~~~~w~~~~~~~~ny~~~~~k~~~ 318 (322)
T PLN02396 286 EMAGFVYNPITGRWLLSDDISVNYIAYGTKRKD 318 (322)
T ss_pred EEeeeEEcCcCCeEEecCCCceeehhheecCcc
Confidence 88777544421 22338888888754
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-19 Score=165.73 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=101.0
Q ss_pred CCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||||||+|...... ..+.+|+|+|+|+.|++.+++ +++++++|+ .++|+++++||+|++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~---~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA---LNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc---ccCCCCCCCccEEEEC
Confidence 45789999999999543221 126799999999999987654 378999999 8899999999999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCc-c----------hhHHHhhhhhcCC---CCchhHhHHHHHHHhCCCC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR-C----------FWTKAISIWTSTG---DADHVMIVGAYFHYAGGYE 281 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~-~----------~~~~~~~~w~~~~---~~~h~~~~~~~f~~~~Gf~ 281 (309)
.+++|++|+.+++++++|+|||||.++|..... . .....+....... ......-+.+.+ +++||.
T Consensus 194 ~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l-~~aGf~ 272 (340)
T PLN02244 194 ESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLA-ESLGLQ 272 (340)
T ss_pred CchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHH-HHCCCC
Confidence 999999999999999999999999888764321 0 0111111111111 111223333444 569999
Q ss_pred CCceeeccCC
Q 021661 282 PPQAVDISPN 291 (309)
Q Consensus 282 ~~~~~~~~~~ 291 (309)
.+++.+++..
T Consensus 273 ~v~~~d~s~~ 282 (340)
T PLN02244 273 DIKTEDWSEH 282 (340)
T ss_pred eeEeeeCcHH
Confidence 9998887643
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-19 Score=153.96 Aligned_cols=101 Identities=21% Similarity=0.380 Sum_probs=87.1
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
.++.+|||||||.|... ..+..+.+|+|+|+|+.+|+.|+.. +++.+..+ +++....++||+|+|..||
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~---edl~~~~~~FDvV~cmEVl 134 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATV---EDLASAGGQFDVVTCMEVL 134 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhH---HHHHhcCCCccEEEEhhHH
Confidence 35899999999999654 3445678999999999999998853 56777777 6776666899999999999
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
+|++||+.+++.+.+.+||||.++++++|+.+
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ 166 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFLSTINRTL 166 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEEeccccCH
Confidence 99999999999999999999999999999653
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-18 Score=151.90 Aligned_cols=108 Identities=22% Similarity=0.244 Sum_probs=86.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC-CC-CCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCce
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG-YK-QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSF 209 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~-~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sf 209 (309)
..+.+.+....+ ++.+|||||||+|...... .. +.+|+|+|+|++|++.|+++..++++|+ +.+|+++++|
T Consensus 39 ~~~~~~l~~~~~----~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~~~~~~d~---~~lp~~d~sf 111 (226)
T PRK05785 39 AELVKTILKYCG----RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVADDKVVGSF---EALPFRDKSF 111 (226)
T ss_pred HHHHHHHHHhcC----CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhccceEEech---hhCCCCCCCE
Confidence 344444444333 2679999999999643221 11 4699999999999999998888899999 8999999999
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|+|+++++++|++|+++++++++|+|||. ..+++++.
T Consensus 112 D~v~~~~~l~~~~d~~~~l~e~~RvLkp~-~~ile~~~ 148 (226)
T PRK05785 112 DVVMSSFALHASDNIEKVIAEFTRVSRKQ-VGFIAMGK 148 (226)
T ss_pred EEEEecChhhccCCHHHHHHHHHHHhcCc-eEEEEeCC
Confidence 99999999999999999999999999994 44555554
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=146.15 Aligned_cols=96 Identities=28% Similarity=0.448 Sum_probs=81.4
Q ss_pred CCCCeEEEECCCcchhcc---CC-CCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP---PG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~-~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|.... .. .+..+|+|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~V~~ 120 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA---MELPFDDNSFDYVTI 120 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEech---hcCCCCCCCccEEEE
Confidence 457899999999996432 22 356799999999999987664 368899999 778888889999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
.++++|++++.++++++.++|||||.+++..
T Consensus 121 ~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 121 GFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred ecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 9999999999999999999999999887653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-18 Score=130.45 Aligned_cols=88 Identities=28% Similarity=0.453 Sum_probs=73.5
Q ss_pred EEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-----CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHH
Q 021661 153 LDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 225 (309)
Q Consensus 153 LDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-----i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~ 225 (309)
||+|||.|.... ...+..+|+|+|+|++|++.++++ +.+.++|+ +++|+++++||+|++..+++|++++.
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~---~~l~~~~~sfD~v~~~~~~~~~~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDA---EDLPFPDNSFDVVFSNSVLHHLEDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBT---TSSSS-TT-EEEEEEESHGGGSSHHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehH---HhCccccccccccccccceeeccCHH
Confidence 899999885432 222678999999999999987763 55999999 89999999999999999999999999
Q ss_pred HHHHHHHhhcccCcEEEE
Q 021661 226 EVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 226 ~~l~~i~rvLkpGG~lii 243 (309)
++++++.|+|||||.++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999876
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=149.05 Aligned_cols=125 Identities=14% Similarity=0.220 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFED 206 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~ 206 (309)
...+.+.+.+.++. .++.+|||+|||+|.... ....+.+|+|+|+|+.|++.++++ ..++++|+ +.+|+++
T Consensus 27 q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~---~~~~~~~ 101 (251)
T PRK10258 27 QRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDI---ESLPLAT 101 (251)
T ss_pred HHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCc---ccCcCCC
Confidence 34445555555653 346799999999995432 223467999999999999988775 57899999 8889888
Q ss_pred CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhc
Q 021661 207 NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTS 260 (309)
Q Consensus 207 ~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~ 260 (309)
++||+|+++.+++|..++..+|.++.++|||||.+++++.....+.+....|..
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~ 155 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQA 155 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999987766555555555543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.1e-18 Score=140.16 Aligned_cols=131 Identities=24% Similarity=0.383 Sum_probs=94.7
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHH
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 225 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~ 225 (309)
.++.+|||||||.|..+.. ...+.+++|+|+|+.+++. .+......+. ...+.++++||+|+|+.+|+|++|+.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--~~~~~~~~~~---~~~~~~~~~fD~i~~~~~l~~~~d~~ 95 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--RNVVFDNFDA---QDPPFPDGSFDLIICNDVLEHLPDPE 95 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--TTSEEEEEEC---HTHHCHSSSEEEEEEESSGGGSSHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--hhhhhhhhhh---hhhhccccchhhHhhHHHHhhcccHH
Confidence 4588999999999855432 2234599999999999998 4455555555 44556778999999999999999999
Q ss_pred HHHHHHHhhcccCcEEEEEecCcc-hhHHHhhhhhcCCCC-chhHhHH-----HHHHHhCCCCCC
Q 021661 226 EVFKEMCQVLKPGGLAIVSFSNRC-FWTKAISIWTSTGDA-DHVMIVG-----AYFHYAGGYEPP 283 (309)
Q Consensus 226 ~~l~~i~rvLkpGG~lii~~~~~~-~~~~~~~~w~~~~~~-~h~~~~~-----~~f~~~~Gf~~~ 283 (309)
.+|+++.++|||||++++++++.. ........|...... .|..++. +++ +++||+.+
T Consensus 96 ~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~G~~iv 159 (161)
T PF13489_consen 96 EFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLL-EQAGFEIV 159 (161)
T ss_dssp HHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHH-HHTTEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHH-HHCCCEEE
Confidence 999999999999999999988753 344444445322211 3333332 234 56888754
|
... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-16 Score=145.97 Aligned_cols=154 Identities=18% Similarity=0.211 Sum_probs=111.1
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC-----CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~-----~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
++.+|||||||+|... ....+..+|+++|+|++|++.+++ +++++.+|+ +++++++++||+|+++.+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~---e~lp~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDA---EDLPFPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccH---HhCCCCCCceeEEEEcChhh
Confidence 4689999999999632 233456799999999999998765 378899999 88898889999999999999
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEEEec-CcchhHHH--hhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC----
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIVSFS-NRCFWTKA--ISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP---- 292 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii~~~-~~~~~~~~--~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~---- 292 (309)
|++++..+|++++++|||||.+++..+ .+..+... .+.|.. .....-+.+++ +++||+.+++.++.+.-
T Consensus 190 ~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~---~~t~eEl~~lL-~~aGF~~V~i~~i~~~~~~~~ 265 (340)
T PLN02490 190 YWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWML---FPKEEEYIEWF-TKAGFKDVKLKRIGPKWYRGV 265 (340)
T ss_pred hCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhcc---CCCHHHHHHHH-HHCCCeEEEEEEcChhhcccc
Confidence 999999999999999999998866433 23222211 122221 11223344455 55899999988875542
Q ss_pred --CCCCCcEEEEEEeCCC
Q 021661 293 --GRSDPMYVVYSRKAST 308 (309)
Q Consensus 293 --~~~~p~~~v~a~k~~~ 308 (309)
++.-+-+.|.++|+.+
T Consensus 266 ~~~~~~~~~~v~~~k~~~ 283 (340)
T PLN02490 266 RRHGLIMGCSVTGVKPAS 283 (340)
T ss_pred ccccceeeEEEEEecccc
Confidence 1112237788888754
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=144.69 Aligned_cols=97 Identities=11% Similarity=0.141 Sum_probs=83.3
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
.++.+|||||||+|... ....++.+|+|+|+|+.|++.+++. ++++++|+ +.++ ++++||+|+++.+++|++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~~~ 103 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDV---RDWK-PKPDTDVVVSNAALQWVP 103 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcCh---hhCC-CCCCceEEEEehhhhhCC
Confidence 45789999999999543 2334678999999999999988764 89999999 6664 467899999999999999
Q ss_pred CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 223 KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++.+++++++++|||||.+++.++.
T Consensus 104 d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 104 EHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 9999999999999999999887654
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-16 Score=141.01 Aligned_cols=140 Identities=18% Similarity=0.246 Sum_probs=101.5
Q ss_pred CCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
.++.+|||||||+|..... ...+.+|+|+|+|+.|++.+++ ++.+.++|+ ...|+++++||+|++..++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~---~~~~~~~~~FD~V~s~~~l 127 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDI---LKKDFPENTFDMIYSRDAI 127 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCc---ccCCCCCCCeEEEEEhhhH
Confidence 4578999999998853321 1235699999999999987764 378889998 7888888999999999999
Q ss_pred hccC--CHHHHHHHHHhhcccCcEEEEEecCc---chhHHHhhhhhcC--CCCchhHhHHHHHHHhCCCCCCceeeccC
Q 021661 219 DYLT--KPIEVFKEMCQVLKPGGLAIVSFSNR---CFWTKAISIWTST--GDADHVMIVGAYFHYAGGYEPPQAVDISP 290 (309)
Q Consensus 219 ~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~---~~~~~~~~~w~~~--~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~ 290 (309)
+|++ ++..+|++++++|||||.+++..... ..+...+..+... .......-+.+.+ .++||+.++..+.++
T Consensus 128 ~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGF~~v~~~d~~~ 205 (263)
T PTZ00098 128 LHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLI-KSCNFQNVVAKDISD 205 (263)
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHH-HHCCCCeeeEEeCcH
Confidence 9986 78999999999999999988765421 1222222222211 1122334444555 569999999888654
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-16 Score=139.25 Aligned_cols=137 Identities=19% Similarity=0.274 Sum_probs=99.2
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+++|||+|||+|... .+++.+..|+|+|+++.|++.|++. +++...|+ +.+. +.||.|+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~---E~~~---~~fDaVv 163 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV---EGLT---GKFDAVV 163 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch---hhcc---cccceee
Confidence 588999999999654 4556688999999999999988763 45566666 4442 4599999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecCcch--------hHHHhhhhhcCCCCchhHhHHH-----HHHHhCCC
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF--------WTKAISIWTSTGDADHVMIVGA-----YFHYAGGY 280 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~--------~~~~~~~w~~~~~~~h~~~~~~-----~f~~~~Gf 280 (309)
|..+++|+.||..+++.+.+.|||||.++|++.|+.. +.+....|...+...-..+++. .+ .++++
T Consensus 164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l-~~~~~ 242 (282)
T KOG1270|consen 164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSIL-NANGA 242 (282)
T ss_pred eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH-HhcCc
Confidence 9999999999999999999999999999999988643 3344444444332222222222 33 34677
Q ss_pred CCCceeeccCCC
Q 021661 281 EPPQAVDISPNP 292 (309)
Q Consensus 281 ~~~~~~~~~~~~ 292 (309)
....+.+..-+|
T Consensus 243 ~v~~v~G~~y~p 254 (282)
T KOG1270|consen 243 QVNDVVGEVYNP 254 (282)
T ss_pred chhhhhcccccc
Confidence 777666665444
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-16 Score=144.79 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=81.9
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCC-CCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-FEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp-~~~~sfDlVis~~ 216 (309)
++.+|||+|||+|... ..+..+.+|+|+|+|++|++.|++ +++++++|+ .+++ +.+++||+|++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~---~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA---QDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH---HHHhhhcCCCCCEEEehh
Confidence 4679999999999543 223346799999999999998764 267889998 6653 5568899999999
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+++|+.++..+++++.++|||||.+++.+.+.
T Consensus 121 vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 99999999999999999999999998877664
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.4e-15 Score=133.34 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=97.2
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
+.+|||||||+|.. +....+..+++++|+|+.+++.+++ ++.++++|+ ..+++++++||+|++..+++|+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDA---EKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecch---hhCCCCCCceeEEEEhhhhhhc
Confidence 57999999999853 3334566789999999999987665 368999999 7888888899999999999999
Q ss_pred CCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhh-cCCCCchhHhHHHHHHHhCCCCCCce
Q 021661 222 TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWT-STGDADHVMIVGAYFHYAGGYEPPQA 285 (309)
Q Consensus 222 ~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~-~~~~~~h~~~~~~~f~~~~Gf~~~~~ 285 (309)
.++..+++++.++|||||.+++..+...........+. ..........+.+.+.. . |..+.+
T Consensus 112 ~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-f~~~~~ 174 (240)
T TIGR02072 112 DDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLDELKALLKN-S-FELLTL 174 (240)
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHHHHHHHHHH-h-cCCcEE
Confidence 99999999999999999999988766544433333332 11222223334445543 2 665543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-15 Score=142.64 Aligned_cols=146 Identities=16% Similarity=0.151 Sum_probs=100.3
Q ss_pred HHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhC---------CCCCcEEEecCCCCCCCCCCC
Q 021661 138 YSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRN---------PVLTEYVVQDLNLNPKLPFED 206 (309)
Q Consensus 138 ~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a---------~~~i~~~~~D~~~~~~lp~~~ 206 (309)
+...++. .++.+|||||||+|...... .....|+|+|+|+.|+.++ ..+++++.+|+ +++|+ +
T Consensus 114 l~~~l~~--l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~---e~lp~-~ 187 (322)
T PRK15068 114 VLPHLSP--LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI---EQLPA-L 187 (322)
T ss_pred HHHhhCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH---HHCCC-c
Confidence 3444443 34789999999999654322 1234699999999988642 12488999999 88887 7
Q ss_pred CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC---cc----hhHHHhhhhhcCCCCchhHhHHHHHHHhCC
Q 021661 207 NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---RC----FWTKAISIWTSTGDADHVMIVGAYFHYAGG 279 (309)
Q Consensus 207 ~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~---~~----~~~~~~~~w~~~~~~~h~~~~~~~f~~~~G 279 (309)
++||+|+|..+++|+.++..+|++++++|||||.++++... .. .....+..+...........+...+ .++|
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~~l~~~L-~~aG 266 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVPALKNWL-ERAG 266 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHHHHHHHH-HHcC
Confidence 88999999999999999999999999999999999887421 10 1111111111111011222333344 5699
Q ss_pred CCCCceeeccC
Q 021661 280 YEPPQAVDISP 290 (309)
Q Consensus 280 f~~~~~~~~~~ 290 (309)
|+.+++++.++
T Consensus 267 F~~i~~~~~~~ 277 (322)
T PRK15068 267 FKDVRIVDVSV 277 (322)
T ss_pred CceEEEEeCCC
Confidence 99999888754
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=140.67 Aligned_cols=158 Identities=14% Similarity=0.056 Sum_probs=103.2
Q ss_pred CHHHHHHHH-HHHHhhCCCCCCCCCeEEEECCCcchhccCC-CCC-CeEEEEeCCHHHHhhCC---------CCCcEEEe
Q 021661 127 DDPAIAALT-KYYSEVFPPSNTPGVSILDLCSSWVSHFPPG-YKQ-DRIVGMGMNEEELKRNP---------VLTEYVVQ 194 (309)
Q Consensus 127 ~~~~~~~l~-~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~~-~~v~giD~S~~~l~~a~---------~~i~~~~~ 194 (309)
+.+....+. ..+...+.. .++.+|||||||+|...... ..+ ..|+|+|+|+.|+.+++ .++.+...
T Consensus 101 ~~e~~s~~~~~~~l~~l~~--~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~ 178 (314)
T TIGR00452 101 DSEWRSDIKWDRVLPHLSP--LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL 178 (314)
T ss_pred CHHHHHHHHHHHHHHhcCC--CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC
Confidence 344444333 223344332 45789999999999653221 223 47999999999986532 23677888
Q ss_pred cCCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC--cch-----hHHHhhhhhcCCCCchh
Q 021661 195 DLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN--RCF-----WTKAISIWTSTGDADHV 267 (309)
Q Consensus 195 D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~--~~~-----~~~~~~~w~~~~~~~h~ 267 (309)
++ +++|.. ++||+|+|+.+++|+.++..+|++++++|||||.|++++.. ... ....+............
T Consensus 179 ~i---e~lp~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~ 254 (314)
T TIGR00452 179 GI---EQLHEL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSV 254 (314)
T ss_pred CH---HHCCCC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCH
Confidence 88 777754 47999999999999999999999999999999999887432 100 11111111111111123
Q ss_pred HhHHHHHHHhCCCCCCceeeccCC
Q 021661 268 MIVGAYFHYAGGYEPPQAVDISPN 291 (309)
Q Consensus 268 ~~~~~~f~~~~Gf~~~~~~~~~~~ 291 (309)
..+..++ +++||+.+++++.+..
T Consensus 255 ~~L~~~L-~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 255 SALKNWL-EKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHHH-HHCCCeEEEEEeccCC
Confidence 3344455 5699999999887543
|
Known examples to date are restricted to the proteobacteria. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.8e-16 Score=129.36 Aligned_cols=96 Identities=28% Similarity=0.457 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC--CCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp--~~~~sfDlVi 213 (309)
++.+|||+|||+|... . ...+..+++|+|+|++|++.|++ +++|+++|+ .+++ ++ ++||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~---~~l~~~~~-~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDI---EDLPQELE-EKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBT---TCGCGCSS-TTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeeh---hccccccC-CCeeEEE
Confidence 4789999999999533 3 34568899999999999998876 389999999 6676 55 7899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+..+++|+.++..+++++.+.||+||.+++....
T Consensus 79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999999999999999999999999998887665
|
... |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-17 Score=141.92 Aligned_cols=195 Identities=19% Similarity=0.195 Sum_probs=131.8
Q ss_pred CChhHHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCCCC-CCeEEEEeCC
Q 021661 100 FKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYK-QDRIVGMGMN 178 (309)
Q Consensus 100 ~~~e~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~~-~~~v~giD~S 178 (309)
|.+..|+.+++.++.. .+..+.-..-..+.+.+.+.-. .+-.++||+|||+|..-...+. ..+++|+|+|
T Consensus 86 YVe~LFD~~Ae~Fd~~------LVdkL~Y~vP~~l~emI~~~~~---g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS 156 (287)
T COG4976 86 YVETLFDQYAERFDHI------LVDKLGYSVPELLAEMIGKADL---GPFRRMLDLGCGTGLTGEALRDMADRLTGVDIS 156 (287)
T ss_pred HHHHHHHHHHHHHHHH------HHHHhcCccHHHHHHHHHhccC---CccceeeecccCcCcccHhHHHHHhhccCCchh
Confidence 4566677777766543 2222222222223333333221 2357999999999976554443 4589999999
Q ss_pred HHHHhhCCCC---CcEEEecCCCCCCCC-CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHH
Q 021661 179 EEELKRNPVL---TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 254 (309)
Q Consensus 179 ~~~l~~a~~~---i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~ 254 (309)
++|+++|.++ -...++|+. ..++ ..++.||+|++..|+.++-+.+.++.-+...|+|||++.+++-.-.-+..
T Consensus 157 ~nMl~kA~eKg~YD~L~~Aea~--~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~- 233 (287)
T COG4976 157 ENMLAKAHEKGLYDTLYVAEAV--LFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG- 233 (287)
T ss_pred HHHHHHHHhccchHHHHHHHHH--HHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC-
Confidence 9999999886 455667762 1233 45678999999999999999999999999999999999998765222110
Q ss_pred hhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCCCCCCc--EEEEEEeCC
Q 021661 255 ISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPM--YVVYSRKAS 307 (309)
Q Consensus 255 ~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p~--~~v~a~k~~ 307 (309)
+ .......+.|-+.|..-.-...||+.+++.+.+-+.....|. ..++|||+.
T Consensus 234 f-~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~ttiR~d~g~pv~G~L~iark~~ 287 (287)
T COG4976 234 F-VLGPSQRYAHSESYVRALLAASGLEVIAIEDTTIRRDAGEPVPGILVIARKKA 287 (287)
T ss_pred e-ecchhhhhccchHHHHHHHHhcCceEEEeecccchhhcCCCCCCceEEEecCC
Confidence 0 112233556655444433467999999999988776666665 888999874
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=136.17 Aligned_cols=138 Identities=24% Similarity=0.269 Sum_probs=99.6
Q ss_pred CCCCeEEEECCCcchhc---cC-CCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PP-GYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~-~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|... .. ..+..+|+|+|+|+.|++.+++ +++++++|+ +.+++++++||+|++
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~---~~l~~~~~~fD~Vi~ 152 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEI---EALPVADNSVDVIIS 152 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcch---hhCCCCCCceeEEEE
Confidence 45889999999998532 22 2345689999999999998875 367889999 888888889999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEec-C-c---chhHHHhhhhhcC-CCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS-N-R---CFWTKAISIWTST-GDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~-~-~---~~~~~~~~~w~~~-~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
+.+++|.++..+++++++++|||||.+++... . . .........|... .......-+.+.+ ..+||..+++...
T Consensus 153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l-~~aGf~~v~i~~~ 231 (272)
T PRK11873 153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGALQEEEYLAML-AEAGFVDITIQPK 231 (272)
T ss_pred cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCCCHHHHHHHH-HHCCCCceEEEec
Confidence 99999999999999999999999998877532 1 1 1122222334321 1112233344455 4589999877553
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=147.20 Aligned_cols=138 Identities=22% Similarity=0.268 Sum_probs=99.3
Q ss_pred CCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|.... ....+.+|+|+|+|+.|++.|+++ +++.++|+ ..+++++++||+|+|..+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~s~~~ 341 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADC---TKKTYPDNSFDVIYSRDT 341 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCc---ccCCCCCCCEEEEEECCc
Confidence 457899999999995321 122367999999999999987542 68999999 778888889999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCcc--hhHHHhh-hhhcC-CCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC--FWTKAIS-IWTST-GDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~--~~~~~~~-~w~~~-~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
++|++++..++++++++|||||.++++..... ....... .+... ........+.+.+ .++||..+++.+.
T Consensus 342 l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l-~~aGF~~i~~~d~ 415 (475)
T PLN02336 342 ILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDVQAYGQML-KDAGFDDVIAEDR 415 (475)
T ss_pred ccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCHHHHHHHH-HHCCCeeeeeecc
Confidence 99999999999999999999999988754311 1111111 11111 1222344444455 5699998866654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-14 Score=129.02 Aligned_cols=137 Identities=24% Similarity=0.359 Sum_probs=99.4
Q ss_pred CCCCeEEEECCCcchhc---cCCC-CCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF---PPGY-KQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~-~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||+|||+|... .... +..+++|+|+|+.+++.++++ +++.+.|+ ..+++++++||+|++.
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~~ 94 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGLPFPDGSFDAVRSD 94 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccCCCCCCCceEEEEe
Confidence 45789999999998643 2222 567999999999999877553 78889998 7788888899999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCc----------chhHHHhhhhhcCC-CCchhHhHHHHHHHhCCCCCCc
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR----------CFWTKAISIWTSTG-DADHVMIVGAYFHYAGGYEPPQ 284 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~----------~~~~~~~~~w~~~~-~~~h~~~~~~~f~~~~Gf~~~~ 284 (309)
.+++|+.++..+++++.++|||||.+++..+.. ....+....|.... +......+.+.+ ..+||+.++
T Consensus 95 ~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~ 173 (241)
T PRK08317 95 RVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSDHFADPWLGRRLPGLF-REAGLTDIE 173 (241)
T ss_pred chhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHhcCCCCcHHHHHHHHH-HHcCCCcee
Confidence 999999999999999999999999888765431 12333444444322 111122333444 558998765
Q ss_pred eee
Q 021661 285 AVD 287 (309)
Q Consensus 285 ~~~ 287 (309)
...
T Consensus 174 ~~~ 176 (241)
T PRK08317 174 VEP 176 (241)
T ss_pred EEE
Confidence 433
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-15 Score=135.59 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=82.4
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
.++.+|||||||+|... ....+..+|+|+|+|+.|++.++++ +.++.+|+ ..+. ++++||+|+++.+++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADI---ASWQ-PPQALDLIFANASLQW 105 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECch---hccC-CCCCccEEEEccChhh
Confidence 45789999999999543 3345678999999999999988764 77899998 5554 3468999999999999
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++++..+++++.++|||||.++++++.
T Consensus 106 ~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 106 LPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 999999999999999999999988654
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-15 Score=126.40 Aligned_cols=135 Identities=18% Similarity=0.333 Sum_probs=97.3
Q ss_pred CCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC--------C-cEEEecCCCCCCCC-CCCCceeEEEecc
Q 021661 149 GVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL--------T-EYVVQDLNLNPKLP-FEDNSFDVITNVV 216 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~--------i-~~~~~D~~~~~~lp-~~~~sfDlVis~~ 216 (309)
...+||||||+|..+..- .|..+||++|+|+.|-+.+.+. + .|++++. +++| ++++|+|+|++.+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g---e~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG---ENLPQLADGSYDTVVCTL 153 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech---hcCcccccCCeeeEEEEE
Confidence 457899999999766544 3789999999999998865432 4 4999999 8998 8899999999999
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEE-EEecC--cchhHHHh-----hhhhcCCCCchhHh-HHHHHHHhCCCCCCceee
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAI-VSFSN--RCFWTKAI-----SIWTSTGDADHVMI-VGAYFHYAGGYEPPQAVD 287 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~li-i~~~~--~~~~~~~~-----~~w~~~~~~~h~~~-~~~~f~~~~Gf~~~~~~~ 287 (309)
+|.-+.|+.+.|+++.|+|||||.++ ++-.. ..+|.... ..|.-..+..++.. ..+.+ ..+-|+..+...
T Consensus 154 vLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~dGC~ltrd~~e~L-eda~f~~~~~kr 232 (252)
T KOG4300|consen 154 VLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESDGCVLTRDTGELL-EDAEFSIDSCKR 232 (252)
T ss_pred EEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhhheeccceEEehhHHHHh-hhcccccchhhc
Confidence 99999999999999999999999665 44322 23333332 23554455555432 22233 335566544443
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-14 Score=129.27 Aligned_cols=94 Identities=16% Similarity=0.300 Sum_probs=77.4
Q ss_pred CCCeEEEECCCcchhcc---CC--CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHFP---PG--YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~---~~--~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
++.+|||||||+|.... .. .++.+|+|+|+|+.|++.|+++ ++++++|+ ..++++ .+|+|+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~--~~d~v~ 127 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI---RHVEIK--NASMVI 127 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECCh---hhCCCC--CCCEEe
Confidence 37799999999996532 22 3678999999999999887542 68899999 777754 489999
Q ss_pred eccchhccC--CHHHHHHHHHhhcccCcEEEEEec
Q 021661 214 NVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 214 s~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++++++|++ +...++++++++|||||.+++...
T Consensus 128 ~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 128 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred eecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 999999996 457899999999999999888743
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-16 Score=119.26 Aligned_cols=86 Identities=22% Similarity=0.297 Sum_probs=55.5
Q ss_pred EEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCC-C-CCCCceeEEEeccchh
Q 021661 153 LDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKL-P-FEDNSFDVITNVVSVD 219 (309)
Q Consensus 153 LDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~l-p-~~~~sfDlVis~~vl~ 219 (309)
||||||+|.... ...+..+++|+|+|+.|++.++++ ......+. .+. . ...++||+|++..++|
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~fD~V~~~~vl~ 77 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDV---LDLFDYDPPESFDLVVASNVLH 77 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--S---SS---CCC----SEEEEE-TTS
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeec---CChhhcccccccceehhhhhHh
Confidence 799999996543 334678999999999999988876 12333332 121 1 1225899999999999
Q ss_pred ccCCHHHHHHHHHhhcccCcEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLA 241 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~l 241 (309)
|++++..++++++++|||||.|
T Consensus 78 ~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 78 HLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp --S-HHHHHHHHTTT-TSS-EE
T ss_pred hhhhHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999976
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.6e-16 Score=121.70 Aligned_cols=95 Identities=23% Similarity=0.323 Sum_probs=74.5
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
|+.+|||||||+|... ....++.+|+|+|+|++|++.+++ +++++++|+ .......+.||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA---EFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC---HGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc---ccCcccCCCCCEEEEC
Confidence 4789999999999543 222478999999999999987664 378999998 2222233569999999
Q ss_pred c-chhcc---CCHHHHHHHHHhhcccCcEEEEEe
Q 021661 216 V-SVDYL---TKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 216 ~-vl~~l---~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
. .++++ .+..++++++.+.|||||+++|+.
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9 55544 356889999999999999999875
|
... |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-15 Score=132.76 Aligned_cols=93 Identities=17% Similarity=0.297 Sum_probs=76.8
Q ss_pred CCCeEEEECCCcchhc---cC--CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHF---PP--GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~--~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
++.+|||||||+|... .. ..++.+|+|+|+|+.|++.|++ +++++++|+ ..+|++ .+|+|+
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~---~~~~~~--~~D~vv 130 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI---RDIAIE--NASMVV 130 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh---hhCCCC--CCCEEe
Confidence 3789999999999643 22 2467899999999999998754 378899998 777654 489999
Q ss_pred eccchhccCC--HHHHHHHHHhhcccCcEEEEEe
Q 021661 214 NVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 214 s~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~ 245 (309)
++.+++|+++ ...++++++++|||||.+++..
T Consensus 131 ~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 131 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred hhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999999964 4689999999999999887763
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=126.32 Aligned_cols=95 Identities=21% Similarity=0.196 Sum_probs=75.3
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
++.+|||+|||+|... ..+..+.+|+|+|+|+.|++.+++ ++++.+.|+ ..++++ ++||+|+++.++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~ 105 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDL---NNLTFD-GEYDFILSTVVL 105 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecCh---hhCCcC-CCcCEEEEecch
Confidence 4689999999999543 222346799999999999987664 267788888 666664 579999999999
Q ss_pred hccC--CHHHHHHHHHhhcccCcEE-EEEec
Q 021661 219 DYLT--KPIEVFKEMCQVLKPGGLA-IVSFS 246 (309)
Q Consensus 219 ~~l~--d~~~~l~~i~rvLkpGG~l-ii~~~ 246 (309)
+|++ +...+++++.++|||||.+ ++++.
T Consensus 106 ~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~ 136 (197)
T PRK11207 106 MFLEAKTIPGLIANMQRCTKPGGYNLIVAAM 136 (197)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence 9886 4679999999999999975 44443
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-14 Score=128.17 Aligned_cols=134 Identities=14% Similarity=0.169 Sum_probs=93.1
Q ss_pred eEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 151 SILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 151 ~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
+|||||||+|... ....+..+|+|+|+|+++++.++++ ++++..|+ ...+++ ++||+|++..++
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~---~~~~~~-~~fD~I~~~~~l 77 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS---AKDPFP-DTYDLVFGFEVI 77 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc---ccCCCC-CCCCEeehHHHH
Confidence 7999999998633 3344567999999999999877653 58889998 555554 579999999999
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccC
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISP 290 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~ 290 (309)
+|+.++..+|+++.++|||||.+++.......+...-..+.. .......-+.+.+ ..+||...+..++++
T Consensus 78 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~l-~~~Gf~~~~~~~~~~ 147 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETT-SYLVTREEWAELL-ARNNLRVVEGVDASL 147 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccc-cccCCHHHHHHHH-HHCCCeEEEeEECcH
Confidence 999999999999999999999988875432111000000000 0011122233344 458999888877654
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=123.91 Aligned_cols=112 Identities=28% Similarity=0.389 Sum_probs=91.8
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-CCCCceeEE
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-FEDNSFDVI 212 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-~~~~sfDlV 212 (309)
.+.++++ ++.+|||+|||.|..+.. ..++.+..|+|++++.+..+.++ +..+++|++ +.|+ +++++||.|
T Consensus 6 ~I~~~I~----pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld--~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 6 IIAEWIE----PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARGVSVIQGDLD--EGLADFPDQSFDYV 79 (193)
T ss_pred HHHHHcC----CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcCCCEEECCHH--HhHhhCCCCCccEE
Confidence 3444554 389999999999976533 34678999999999998887665 899999996 5565 899999999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhh
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI 257 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~ 257 (309)
|.+.+|+++.+|+++|+||.|+ |...++++||...|......
T Consensus 80 IlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l 121 (193)
T PF07021_consen 80 ILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQL 121 (193)
T ss_pred ehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHH
Confidence 9999999999999999999877 66999999998777655543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.6e-14 Score=126.43 Aligned_cols=162 Identities=20% Similarity=0.271 Sum_probs=105.9
Q ss_pred CCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC--
Q 021661 112 PDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV-- 187 (309)
Q Consensus 112 ~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~-- 187 (309)
|+..||..+.. ..++......+.+.+.+. ..+|++|||||||||.....+ ..+.+|+|+++|+++.+.+++
T Consensus 41 Yscayf~~~~~---tL~eAQ~~k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~ 115 (283)
T COG2230 41 YSCAYFEDPDM---TLEEAQRAKLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI 115 (283)
T ss_pred eeeEEeCCCCC---ChHHHHHHHHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH
Confidence 45555555443 223334444455555555 477999999999999665333 237899999999999988766
Q ss_pred -------CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEec-Ccc----hhHH
Q 021661 188 -------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFS-NRC----FWTK 253 (309)
Q Consensus 188 -------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~-~~~----~~~~ 253 (309)
++++...|. .++. +.||.|+|..+++|+.. ...+|+.++++|+|||.+++... .+. ....
T Consensus 116 ~~~gl~~~v~v~l~d~---rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~ 189 (283)
T COG2230 116 AARGLEDNVEVRLQDY---RDFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPD 189 (283)
T ss_pred HHcCCCcccEEEeccc---cccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchH
Confidence 367777887 5553 44999999999999964 89999999999999997766543 222 1222
Q ss_pred Hhhhhh-cCCCCchhHhHHHHHHHhCCCCCCce
Q 021661 254 AISIWT-STGDADHVMIVGAYFHYAGGYEPPQA 285 (309)
Q Consensus 254 ~~~~w~-~~~~~~h~~~~~~~f~~~~Gf~~~~~ 285 (309)
.+..+. ..+....+..+.+.. ...||.....
T Consensus 190 ~i~~yiFPgG~lPs~~~i~~~~-~~~~~~v~~~ 221 (283)
T COG2230 190 FIDKYIFPGGELPSISEILELA-SEAGFVVLDV 221 (283)
T ss_pred HHHHhCCCCCcCCCHHHHHHHH-HhcCcEEehH
Confidence 222222 223333345555543 4467765443
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.3e-15 Score=132.65 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchh-------ccCCC-----CCCeEEEEeCCHHHHhhCCC----------------------------
Q 021661 148 PGVSILDLCSSWVSH-------FPPGY-----KQDRIVGMGMNEEELKRNPV---------------------------- 187 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~-------~~~~~-----~~~~v~giD~S~~~l~~a~~---------------------------- 187 (309)
++.+|+|+|||+|.. +.... ...+|+|+|+|+.||+.|++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 467999999999941 11111 24689999999999998776
Q ss_pred -------CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 188 -------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 188 -------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+++|.++|+ .+.++++++||+|+|.++++|++++ .+++++++++|||||++++...
T Consensus 179 v~~~ir~~V~F~~~dl---~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 179 VKPELKERVRFAKHNL---LAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EChHHhCcCEEeeccC---CCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 267889999 7777677899999999999999744 5899999999999999998644
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=121.19 Aligned_cols=130 Identities=15% Similarity=0.106 Sum_probs=94.1
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+|||+|||+|.. +....+..+|+|+|+|+.|++.++++ ++++++|+ .+++. +++||+|++..
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~---~~~~~-~~~fDlV~~~~- 120 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRA---EEFGQ-EEKFDVVTSRA- 120 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccH---hhCCC-CCCccEEEEcc-
Confidence 78999999999952 23345788999999999999877652 78999999 67766 67899999975
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCCCCCC
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDP 297 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p 297 (309)
+.+++.++++++++|||||.+++....... . + -.-..++.|+...+.+-.+.+..+..|
T Consensus 121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~-~-------------~----l~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (187)
T PRK00107 121 ---VASLSDLVELCLPLLKPGGRFLALKGRDPE-E-------------E----IAELPKALGGKVEEVIELTLPGLDGER 179 (187)
T ss_pred ---ccCHHHHHHHHHHhcCCCeEEEEEeCCChH-H-------------H----HHHHHHhcCceEeeeEEEecCCCCCcE
Confidence 457889999999999999988776432110 0 0 011224568887777766665555556
Q ss_pred cEEEEEEe
Q 021661 298 MYVVYSRK 305 (309)
Q Consensus 298 ~~~v~a~k 305 (309)
+.++-||
T Consensus 180 -~~~~~~~ 186 (187)
T PRK00107 180 -HLVIIRK 186 (187)
T ss_pred -EEEEEec
Confidence 4555555
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=121.48 Aligned_cols=94 Identities=29% Similarity=0.464 Sum_probs=78.9
Q ss_pred CCCeEEEECCCcchhc---cCCCCC-CeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQ-DRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~-~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
++.+|||+|||.|... ....+. .+++++|+++.+++.+++ ++++..+|+ .++++++++||+|+++.+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADA---EALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecch---hcCCCCCCcEEEEEEeee
Confidence 5789999999988543 223333 689999999999987654 378899999 777777788999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
++|..++..+++++.++|+|||.+++.
T Consensus 116 ~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 116 LRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred eCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 999999999999999999999987664
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.8e-14 Score=123.39 Aligned_cols=94 Identities=31% Similarity=0.469 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchhc---cCCCC-CCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHF---PPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~-~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
++.+|||+|||.|... ....+ ..+++++|+++.+++.++++ +.++.+|+ .+++++.++||+|++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~I~~ 127 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA---EALPFPDNSFDAVTI 127 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc---ccCCCCCCCccEEEE
Confidence 4689999999988543 22233 57999999999999876543 67888898 677777788999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..+++++.++..+++++.++|+|||.+++.
T Consensus 128 ~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 128 AFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred ecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 999999999999999999999999977554
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.2e-13 Score=120.77 Aligned_cols=95 Identities=18% Similarity=0.267 Sum_probs=75.5
Q ss_pred CCCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 148 PGVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
++.+|||||||+|..+. ...++.+++|+|+|++|++.|+++ +.+.++|+ .. |+++++||+|+++.+|+|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~---~~-~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSL---FD-PFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeec---cC-CCCCCCEEEEEECChhhhC
Confidence 46799999999996432 333578999999999999999774 78899998 56 7888999999999999999
Q ss_pred C--CHHHHHHHHHhhcccCcEEEE-EecCc
Q 021661 222 T--KPIEVFKEMCQVLKPGGLAIV-SFSNR 248 (309)
Q Consensus 222 ~--d~~~~l~~i~rvLkpGG~lii-~~~~~ 248 (309)
+ +..++++++.|++ ++.++| +..++
T Consensus 119 ~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 119 NPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred CHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 5 3578899999987 355554 44343
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.7e-14 Score=130.00 Aligned_cols=109 Identities=22% Similarity=0.314 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNL 198 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~ 198 (309)
...+..+.+.+.+. ..++.+|||||||+|.....+ ..+++|+|+.+|+++.+.+++ ++++...|.
T Consensus 46 AQ~~k~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~-- 121 (273)
T PF02353_consen 46 AQERKLDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY-- 121 (273)
T ss_dssp HHHHHHHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G--
T ss_pred HHHHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec--
Confidence 34445556666554 477999999999999654322 227899999999999987653 267888888
Q ss_pred CCCCCCCCCceeEEEeccchhcc--CCHHHHHHHHHhhcccCcEEEEEec
Q 021661 199 NPKLPFEDNSFDVITNVVSVDYL--TKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 199 ~~~lp~~~~sfDlVis~~vl~~l--~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+++. +||.|+|..+++|+ .+...+++++.++|||||.+++...
T Consensus 122 -~~~~~---~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 122 -RDLPG---KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp -GG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred -cccCC---CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 66543 89999999999999 4678999999999999999987754
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-15 Score=115.20 Aligned_cols=85 Identities=26% Similarity=0.425 Sum_probs=66.4
Q ss_pred EEEECCCcchhccC---C---CCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEecc-c
Q 021661 152 ILDLCSSWVSHFPP---G---YKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVV-S 217 (309)
Q Consensus 152 ILDiGcG~g~~~~~---~---~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~-v 217 (309)
|||+|||+|..+.. . .+..+++|+|+|++|++.++++ ++++++|+ .+++..+++||+|+++. +
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~---~~l~~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADA---RDLPFSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCT---TCHHHHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCH---hHCcccCCCeeEEEEcCCc
Confidence 79999999854321 1 2347999999999999987664 69999999 88988888999999954 5
Q ss_pred hhccCC--HHHHHHHHHhhcccCc
Q 021661 218 VDYLTK--PIEVFKEMCQVLKPGG 239 (309)
Q Consensus 218 l~~l~d--~~~~l~~i~rvLkpGG 239 (309)
++|+.+ ..++++++.++|||||
T Consensus 78 ~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999864 5789999999999998
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-14 Score=122.17 Aligned_cols=93 Identities=17% Similarity=0.191 Sum_probs=72.4
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
++.+|||+|||+|... ..+..+.+|+|+|+|+.|++.++++ +.+.+.|+ ...+++ ++||+|+++.+++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~I~~~~~~~ 105 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDI---NAAALN-EDYDFIFSTVVFM 105 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccc---hhcccc-CCCCEEEEecccc
Confidence 3679999999999643 2223467999999999999876532 56777777 555554 5799999999999
Q ss_pred ccC--CHHHHHHHHHhhcccCcEE-EEE
Q 021661 220 YLT--KPIEVFKEMCQVLKPGGLA-IVS 244 (309)
Q Consensus 220 ~l~--d~~~~l~~i~rvLkpGG~l-ii~ 244 (309)
|++ +...+++++.++|||||.+ ++.
T Consensus 106 ~~~~~~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 106 FLQAGRVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 985 4578999999999999974 444
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=117.16 Aligned_cols=100 Identities=28% Similarity=0.354 Sum_probs=79.3
Q ss_pred CCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC-CCcEEEecCCCCCC-C-CCCCCceeEEEeccchhccCC
Q 021661 149 GVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPK-L-PFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~-~i~~~~~D~~~~~~-l-p~~~~sfDlVis~~vl~~l~d 223 (309)
+.+|||||||+|...... .....++|+|+|++|++.+++ +++++++|+ .+ + ++++++||+|+++.+++|+.+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~~~~~~~~d~---~~~l~~~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVARGVNVIQGDL---DEGLEAFPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHcCCeEEEEEh---hhcccccCCCCcCEEEEhhHhHcCcC
Confidence 679999999999654322 235678999999999998754 488999998 43 4 367789999999999999999
Q ss_pred HHHHHHHHHhhcccCcEEEEEecCcchhHHH
Q 021661 224 PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 254 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~ 254 (309)
+..+++++.|+++ .+++++++...+...
T Consensus 91 ~~~~l~e~~r~~~---~~ii~~p~~~~~~~~ 118 (194)
T TIGR02081 91 PEEILDEMLRVGR---HAIVSFPNFGYWRVR 118 (194)
T ss_pred HHHHHHHHHHhCC---eEEEEcCChhHHHHH
Confidence 9999999988754 567788876555433
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-14 Score=121.41 Aligned_cols=97 Identities=15% Similarity=0.264 Sum_probs=86.2
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
....+|.|+|||.|.. +....|.+.|+|+|-|++||+.|+++ ++|.++|+ .... ++..+|+++++-+|+|
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl---~~w~-p~~~~dllfaNAvlqW 104 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADL---RTWK-PEQPTDLLFANAVLQW 104 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccH---hhcC-CCCccchhhhhhhhhh
Confidence 4578999999998853 45668999999999999999999774 89999999 6665 3567999999999999
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++|..+.|..+...|.|||.|.+..++
T Consensus 105 lpdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 105 LPDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred ccccHHHHHHHHHhhCCCceEEEECCC
Confidence 999999999999999999999999886
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.3e-13 Score=124.05 Aligned_cols=107 Identities=20% Similarity=0.304 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc---CCCC---CCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP---PGYK---QDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPK 201 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~---~~~~---~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~ 201 (309)
...+.+.+.+.++ .+..+|||+|||+|.... ...+ ...++|+|+|+.|++.|+++ +.+.++|+ .+
T Consensus 71 ~~~i~~~l~~~l~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~---~~ 144 (272)
T PRK11088 71 RDAVANLLAERLD---EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASS---HR 144 (272)
T ss_pred HHHHHHHHHHhcC---CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeec---cc
Confidence 3444555555554 235789999999996432 2222 24799999999999988653 78999999 88
Q ss_pred CCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 202 lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
+|+++++||+|++.+. ...++++.|+|||||.+++..++...
T Consensus 145 lp~~~~sfD~I~~~~~-------~~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 145 LPFADQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred CCCcCCceeEEEEecC-------CCCHHHHHhhccCCCEEEEEeCCCcc
Confidence 9999999999998764 13468999999999999888776543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-13 Score=125.10 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=97.2
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchhccCCC-CC-CeEEEEeCCHHHHhhCC-------CCCcEEEe--cCCCCCCCCCC
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSHFPPGY-KQ-DRIVGMGMNEEELKRNP-------VLTEYVVQ--DLNLNPKLPFE 205 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~-~~-~~v~giD~S~~~l~~a~-------~~i~~~~~--D~~~~~~lp~~ 205 (309)
.+..++++ -++.+|||||||.|-+...+. .+ ..|+|+|+++....+.. ........ -+ +++|.
T Consensus 106 rl~p~l~~--L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv---E~Lp~- 179 (315)
T PF08003_consen 106 RLLPHLPD--LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV---EDLPN- 179 (315)
T ss_pred HHHhhhCC--cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch---hhccc-
Confidence 34455542 568999999999997654332 23 47999999987654421 11222333 34 67776
Q ss_pred CCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC---c---c-hhHHHhhhhhcCCCCchhHhHHHHHHHhC
Q 021661 206 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---R---C-FWTKAISIWTSTGDADHVMIVGAYFHYAG 278 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~---~---~-~~~~~~~~w~~~~~~~h~~~~~~~f~~~~ 278 (309)
.++||+|+|..||.|..+|-..|+++...|+|||.+++++.- . . .....|.......--..+.....++ +..
T Consensus 180 ~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl-~r~ 258 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWL-ERA 258 (315)
T ss_pred cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHHHHH-HHc
Confidence 678999999999999999999999999999999999988532 0 1 1111111111111111122233344 569
Q ss_pred CCCCCceeeccCC
Q 021661 279 GYEPPQAVDISPN 291 (309)
Q Consensus 279 Gf~~~~~~~~~~~ 291 (309)
||++++++++++.
T Consensus 259 gF~~v~~v~~~~T 271 (315)
T PF08003_consen 259 GFKDVRCVDVSPT 271 (315)
T ss_pred CCceEEEecCccC
Confidence 9999999999755
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=112.52 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=95.0
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||+|||+|... ....+..+|+++|+|+.|++.++++ ++++.+|+ . .++ .++||+|++.
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~---~-~~~-~~~~D~v~~~ 104 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEA---P-IEL-PGKADAIFIG 104 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCc---h-hhc-CcCCCEEEEC
Confidence 34789999999998542 3345678999999999999887653 56777776 3 233 3579999998
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC---
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP--- 292 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~--- 292 (309)
.... ....+++.+.++|||||.+++....... ..-+.+++ .+.||..+++.......
T Consensus 105 ~~~~---~~~~~l~~~~~~Lk~gG~lv~~~~~~~~----------------~~~~~~~l-~~~g~~~~~~~~~~~~~~~~ 164 (187)
T PRK08287 105 GSGG---NLTAIIDWSLAHLHPGGRLVLTFILLEN----------------LHSALAHL-EKCGVSELDCVQLQVSSLTP 164 (187)
T ss_pred CCcc---CHHHHHHHHHHhcCCCeEEEEEEecHhh----------------HHHHHHHH-HHCCCCcceEEEEEEEeeeE
Confidence 7644 4567899999999999999886432111 11222344 45889888776654322
Q ss_pred -------CCCCCcEEEEEEeC
Q 021661 293 -------GRSDPMYVVYSRKA 306 (309)
Q Consensus 293 -------~~~~p~~~v~a~k~ 306 (309)
+...|+++++++|+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~ 185 (187)
T PRK08287 165 LGAGHYFKPNNPTFIISCQKE 185 (187)
T ss_pred cCcceeeccCCCEEEEEEEcC
Confidence 12469999999994
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-13 Score=112.44 Aligned_cols=69 Identities=29% Similarity=0.505 Sum_probs=62.5
Q ss_pred EEEeCCHHHHhhCCC-----------CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEE
Q 021661 173 VGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA 241 (309)
Q Consensus 173 ~giD~S~~~l~~a~~-----------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~l 241 (309)
+|+|+|++|++.|++ +++++++|+ +++|+++++||+|++.++++++.|+.++|++++|+|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~---~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA---IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech---hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 589999999998742 378999999 899999999999999999999999999999999999999977
Q ss_pred EEE
Q 021661 242 IVS 244 (309)
Q Consensus 242 ii~ 244 (309)
++.
T Consensus 78 ~i~ 80 (160)
T PLN02232 78 SIL 80 (160)
T ss_pred EEE
Confidence 554
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.1e-12 Score=114.52 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=91.7
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhh----CC--CCCcEEEecCCCCC-CCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKR----NP--VLTEYVVQDLNLNP-KLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~----a~--~~i~~~~~D~~~~~-~lp~~~~sfDlVis~~ 216 (309)
.++.+|||+|||+|... ....+.++|+|+|+++.|++. ++ .++.++.+|+.... ..++. ++||+|++.
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~-~~~D~i~~d- 148 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVV-EKVDVIYQD- 148 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhcc-ccCCEEEEC-
Confidence 56889999999988532 222335699999999998873 33 35888999983110 01223 469999864
Q ss_pred chhccCCH---HHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHH---HHHHHhCCCCCCceeeccC
Q 021661 217 SVDYLTKP---IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVG---AYFHYAGGYEPPQAVDISP 290 (309)
Q Consensus 217 vl~~l~d~---~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~---~~f~~~~Gf~~~~~~~~~~ 290 (309)
+.++ ..+++++.++|||||.++|.++... -.|.. .+.+.+. +.+ .++||+.++..+..+
T Consensus 149 ----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~------~d~~~----~~~~~~~~~~~~l-~~aGF~~i~~~~l~p 213 (226)
T PRK04266 149 ----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS------IDVTK----DPKEIFKEEIRKL-EEGGFEILEVVDLEP 213 (226)
T ss_pred ----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc------ccCcC----CHHHHHHHHHHHH-HHcCCeEEEEEcCCC
Confidence 2233 3568999999999999988755321 01111 1112222 233 568999998888766
Q ss_pred CCCCCCCcEEEEEEeC
Q 021661 291 NPGRSDPMYVVYSRKA 306 (309)
Q Consensus 291 ~~~~~~p~~~v~a~k~ 306 (309)
.. ...|.++++|.
T Consensus 214 ~~---~~h~~~v~~~~ 226 (226)
T PRK04266 214 YH---KDHAAVVARKK 226 (226)
T ss_pred Cc---CCeEEEEEEcC
Confidence 43 46688888874
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.5e-13 Score=114.31 Aligned_cols=97 Identities=21% Similarity=0.341 Sum_probs=80.4
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchhccC-
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT- 222 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~- 222 (309)
+..-|||||||+|..- ....++...+|+|+|+.||++|.+. -+++.+|+. +.+||..++||-+|+..+++|+-
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG--~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMG--EGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecC--CCCCCCCCccceEEEeeeeeeecc
Confidence 5789999999988543 2334567899999999999998753 468888886 78999999999999999999973
Q ss_pred ------CH----HHHHHHHHhhcccCcEEEEEec
Q 021661 223 ------KP----IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 223 ------d~----~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+| ..++..++.+|++|+..++.+.
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence 23 3588999999999999999865
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.9e-13 Score=134.09 Aligned_cols=95 Identities=23% Similarity=0.260 Sum_probs=78.9
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCC--CCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP--FEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp--~~~~sfDlVis~ 215 (309)
++.+|||||||+|.. +....++.+|+|+|+|+.|++.++++ ++++++|+ .++| +++++||+|+++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa---~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDA---INLSSSFEKESVDTIVYS 494 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcch---HhCccccCCCCEEEEEEc
Confidence 378999999999954 33346788999999999999987653 56788998 6777 778899999999
Q ss_pred cchhccC-------------CHHHHHHHHHhhcccCcEEEEEe
Q 021661 216 VSVDYLT-------------KPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 216 ~vl~~l~-------------d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
.++||+. ++.++|++++++|||||.+++..
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 9998752 45799999999999999888864
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.1e-13 Score=117.84 Aligned_cols=156 Identities=21% Similarity=0.285 Sum_probs=103.3
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCC-CCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP-FEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp-~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|..... ...+.+++++|+++.+++.++++ +++...|+ ..++ ..+++||+|++..+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTA---EELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCH---HHhhhhcCCCccEEEEhhH
Confidence 3578999999998854321 22356899999999999877642 56777777 5543 34578999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHH--------hhhhhcCCCCchhHh-----HHHHHHHhCCCCCCc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA--------ISIWTSTGDADHVMI-----VGAYFHYAGGYEPPQ 284 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~--------~~~w~~~~~~~h~~~-----~~~~f~~~~Gf~~~~ 284 (309)
++|+.++..+|+++.++|+|||.++++.++....... ...+.......+..+ +...+ ..+||+.++
T Consensus 124 l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~v~ 202 (233)
T PRK05134 124 LEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWL-RQAGLEVQD 202 (233)
T ss_pred hhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHH-HHCCCeEee
Confidence 9999999999999999999999999887654322111 111111111111111 22233 569999888
Q ss_pred eeeccCCCC--------CCCCcEEEEEEeC
Q 021661 285 AVDISPNPG--------RSDPMYVVYSRKA 306 (309)
Q Consensus 285 ~~~~~~~~~--------~~~p~~~v~a~k~ 306 (309)
......++. ..+-.|...+||+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (233)
T PRK05134 203 ITGLHYNPLTNRWKLSDDVDVNYMLAARKP 232 (233)
T ss_pred eeeEEechhhcceeeccCccchhhhheecC
Confidence 876554331 1233366666664
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.9e-13 Score=117.68 Aligned_cols=96 Identities=9% Similarity=0.054 Sum_probs=74.9
Q ss_pred CCCCeEEEECCCcchhccC-------CCCCCeEEEEeCCHHHHhhCCCC-----CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFPP-------GYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-------~~~~~~v~giD~S~~~l~~a~~~-----i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|..... ..+..+|+|+|+|++|++.|+++ +++.+.|. ..++.++++||+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVS---DELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEec---ccccccCCCccEEEE
Confidence 3467999999999964211 22356999999999999988764 56778887 667777789999999
Q ss_pred ccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++++||++++ ..+++++.|+++ |+.++..+.
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~ 168 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLI 168 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC-eeEEEeccc
Confidence 9999999875 579999999998 444444443
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.1e-13 Score=128.00 Aligned_cols=104 Identities=22% Similarity=0.300 Sum_probs=80.3
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC-----CcEEEecCCCCCCCCCCCC
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDN 207 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~-----i~~~~~D~~~~~~lp~~~~ 207 (309)
.+.+.+.+. ..++.+|||||||+|...... ..+.+|+|+|+|++|++.++++ +++...|. ..+ ++
T Consensus 156 ~~~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~---~~l---~~ 227 (383)
T PRK11705 156 LDLICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDY---RDL---NG 227 (383)
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECch---hhc---CC
Confidence 344444443 256889999999999654322 2367999999999999988764 56677777 544 46
Q ss_pred ceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEec
Q 021661 208 SFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 208 sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+||+|++..+++|+. ++..+++++.++|||||.+++...
T Consensus 228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 899999999999995 457999999999999999888754
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-13 Score=125.05 Aligned_cols=91 Identities=16% Similarity=0.238 Sum_probs=73.0
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
+.+|||+|||+|... ..+..+.+|+|+|+|+.|++.++++ +++.+.|+ ...++ +++||+|+++.+++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~---~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDI---NSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEech---hcccc-cCCccEEEEcchhhh
Confidence 459999999999643 2233467999999999999876542 67778888 55544 578999999999999
Q ss_pred cC--CHHHHHHHHHhhcccCcEEEE
Q 021661 221 LT--KPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 221 l~--d~~~~l~~i~rvLkpGG~lii 243 (309)
++ +...+++++.++|||||++++
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 86 567899999999999997554
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=9.7e-13 Score=116.03 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=76.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL 202 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~l 202 (309)
.+.+.+.+.++....++.+|||+|||+|..... +..+.+|+|+|+|++|++.|++ ++.+.++|+ ..+
T Consensus 40 ~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~ 116 (219)
T TIGR02021 40 AMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL---LSL 116 (219)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---hhC
Confidence 344444444432124578999999999964322 2235699999999999987764 367888998 666
Q ss_pred CCCCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEE
Q 021661 203 PFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii 243 (309)
+ ++||+|++..+++|++ +...+++++.+++++++.+.+
T Consensus 117 ~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 C---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred C---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 5 6899999999999985 357899999999986655544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.9e-13 Score=114.73 Aligned_cols=141 Identities=19% Similarity=0.222 Sum_probs=95.9
Q ss_pred HHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc---CCCC--CCeEEEEeCC
Q 021661 104 DFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP---PGYK--QDRIVGMGMN 178 (309)
Q Consensus 104 ~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~---~~~~--~~~v~giD~S 178 (309)
.+.+....||+.||..+.-...-++... .+-+-++++....+..+|||||||.|..+. ...+ ...|.++|+|
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL---~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfs 106 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFKDRNWL---LREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFS 106 (264)
T ss_pred hhhcchhhhhhhhhhhccccccchhHHH---HHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCC
Confidence 3456666777778876542212222221 122223333222334489999999886542 2233 3689999999
Q ss_pred HHHHhhCCCC-------CcEEEecCCCCC-CCCCCCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 179 EEELKRNPVL-------TEYVVQDLNLNP-KLPFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 179 ~~~l~~a~~~-------i~~~~~D~~~~~-~lp~~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+.+++..+++ +.-.+.|+.... .-|...+++|+|++.++|..+. ....++++++++|||||.+++-...
T Consensus 107 p~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg 185 (264)
T KOG2361|consen 107 PRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYG 185 (264)
T ss_pred hHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecc
Confidence 9999987764 666788874422 2356788999999999999994 4678999999999999999887544
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=102.95 Aligned_cols=94 Identities=20% Similarity=0.141 Sum_probs=72.0
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCC-CCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPK-LPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~-lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|... ....+..+|+|+|+|+.+++.+++ +++++..|+ .. ++...++||+|++
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~v~~ 94 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA---PEALEDSLPEPDRVFI 94 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc---cccChhhcCCCCEEEE
Confidence 34679999999998543 333456899999999999987654 267777887 33 3333468999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
....+ ...++++++.+.|||||.+++++.
T Consensus 95 ~~~~~---~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 95 GGSGG---LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred CCcch---hHHHHHHHHHHHcCCCCEEEEEec
Confidence 77554 346899999999999999998764
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-13 Score=116.72 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=78.3
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
++.+|||+|||+|... ....+..+|+|+|+|+.|++.+++ +++++++|+. +.++ +++++||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~--~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAV--EVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHH--HHHHHHcCccccceEEE
Confidence 3679999999999543 334567799999999999987754 3778898871 2344 56788999999
Q ss_pred ccchhccC--------CHHHHHHHHHhhcccCcEEEEEecCcchhH
Q 021661 215 VVSVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWT 252 (309)
Q Consensus 215 ~~vl~~l~--------d~~~~l~~i~rvLkpGG~lii~~~~~~~~~ 252 (309)
++...+.. ....++++++++|||||.+++...+.....
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~ 163 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE 163 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence 87654432 147899999999999999999877654443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=111.24 Aligned_cols=136 Identities=15% Similarity=0.109 Sum_probs=94.2
Q ss_pred CCCCeEEEECCCcchhcc----CCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCC-CCCCCCceeEE
Q 021661 147 TPGVSILDLCSSWVSHFP----PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPFEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~----~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~-lp~~~~sfDlV 212 (309)
.++.+|||+|||+|.... ...+..+|+++|+++.|++.+++ ++.++.+|+ .+ ++...++||+|
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~---~~~l~~~~~~~D~V 115 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEA---PEILFTINEKFDRI 115 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEech---hhhHhhcCCCCCEE
Confidence 458899999999995432 22356799999999999987654 356778887 44 33334679999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP 292 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~ 292 (309)
++.. ...++..+++++.++|||||.+++....... +......+ +..|| ..+++.+...-
T Consensus 116 ~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~----------------~~~~~~~l-~~~g~-~~~~~~~~~~~ 174 (198)
T PRK00377 116 FIGG---GSEKLKEIISASWEIIKKGGRIVIDAILLET----------------VNNALSAL-ENIGF-NLEITEVIIAK 174 (198)
T ss_pred EECC---CcccHHHHHHHHHHHcCCCcEEEEEeecHHH----------------HHHHHHHH-HHcCC-CeEEEEEehhh
Confidence 9865 2357789999999999999999887653221 12222333 34777 56666664321
Q ss_pred -----C-----CCCCcEEEEEEeC
Q 021661 293 -----G-----RSDPMYVVYSRKA 306 (309)
Q Consensus 293 -----~-----~~~p~~~v~a~k~ 306 (309)
+ -..|+++++++|+
T Consensus 175 ~~~~~~~~~~~~~npv~~~~~~~~ 198 (198)
T PRK00377 175 GMKTKVGTAMMTRNPIFIISGEKQ 198 (198)
T ss_pred cccccCCcEeecCCCEEEEEEecC
Confidence 1 2479999999884
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-12 Score=112.78 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=71.3
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+|||+|||+|.. +....+..+|+|+|+|+.|++.+++ +++++++|+ .+++ .+++||+|++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~---~~~~-~~~~fD~I~s~~- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRA---EDFQ-HEEQFDVITSRA- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecch---hhcc-ccCCccEEEehh-
Confidence 78999999999953 2334567899999999998876543 378999999 6664 356899999875
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+.+...+++.+.++|||||.+++...
T Consensus 118 ---~~~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 118 ---LASLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred ---hhCHHHHHHHHHHhcCCCCEEEEEcC
Confidence 44677889999999999999887643
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-12 Score=110.68 Aligned_cols=99 Identities=24% Similarity=0.354 Sum_probs=79.0
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCC-CCceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE-DNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~-~~sfDlVis~~v 217 (309)
++.+|||+|||+|.... ....+.+++++|+|+.+++.+++ ++++.+.|+ .+++.. .++||+|++..+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~D~i~~~~~ 121 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSV---EDLAEKGAKSFDVVTCMEV 121 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH---HHhhcCCCCCccEEEehhH
Confidence 47899999999885432 11234579999999999887654 366777887 555533 378999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
++|+.++..+++++.++|+|||.+++...+..
T Consensus 122 l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 122 LEHVPDPQAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred HHhCCCHHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 99999999999999999999999988877643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-12 Score=127.72 Aligned_cols=97 Identities=23% Similarity=0.319 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
++.+|||||||+|.... .+....+|+|+|+|+.|++.+++ +++++++|+.. ..+++++++||+|++..+++|
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~-~~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTS-PDLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccc-cccCCCCCCEEEEehhhhHHh
Confidence 46799999999995432 22235699999999999987642 47899999831 246777889999999999999
Q ss_pred cCC--HHHHHHHHHhhcccCcEEEEEe
Q 021661 221 LTK--PIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 221 l~d--~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+++ ..++++++.++|||||.+++..
T Consensus 116 l~~~~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 116 LSDKEVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 986 5789999999999999887754
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-12 Score=110.63 Aligned_cols=91 Identities=15% Similarity=0.204 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
.++.+|||||||+|... ... .+.++|+++|++++|++.++++ ++++.+|+ .......++||+|+
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~---~~~~~~~~~fD~Ii 147 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG---KRGLEKHAPFDAII 147 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc---ccCCccCCCccEEE
Confidence 45789999999999533 222 2357999999999999877652 67888898 54433457899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+..++++++ +++.++|||||.+++.+.
T Consensus 148 ~~~~~~~~~------~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 148 VTAAASTIP------SALVRQLKDGGVLVIPVE 174 (205)
T ss_pred EccCcchhh------HHHHHhcCcCcEEEEEEc
Confidence 999888765 478899999999988654
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-12 Score=112.16 Aligned_cols=99 Identities=16% Similarity=0.162 Sum_probs=77.0
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC---CCCCceeEEEe
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP---FEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp---~~~~sfDlVis 214 (309)
..+|||||||+|... ....|..+|+|+|+++.|++.+++ +++++++|+ ..++ ++++++|.|++
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~---~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDA---NELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCH---HHHHHhhCCCCceeEEEE
Confidence 569999999999543 445678899999999999987653 478999998 5443 45668999999
Q ss_pred ccchhccCC--------HHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 215 VVSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 215 ~~vl~~l~d--------~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
++...|... ...++++++++|||||.+++.+.+...
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~ 137 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPL 137 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHH
Confidence 876544322 157999999999999999888766443
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-11 Score=110.39 Aligned_cols=161 Identities=17% Similarity=0.124 Sum_probs=97.4
Q ss_pred HHHHHHHHHhhCCCC-CCCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHH----HHhhCC--CCCcEEEecCCCC
Q 021661 131 IAALTKYYSEVFPPS-NTPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEE----ELKRNP--VLTEYVVQDLNLN 199 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~-~~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~----~l~~a~--~~i~~~~~D~~~~ 199 (309)
+.+|+..+..-+... ..++.+|||+|||+|... ... .+...|+++|+|++ |++.++ .++.+++.|+...
T Consensus 114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p 193 (293)
T PTZ00146 114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYP 193 (293)
T ss_pred ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccCh
Confidence 444554443333221 466889999999988533 222 34579999999986 556654 3688999998321
Q ss_pred CCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHH--HHHHHh
Q 021661 200 PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVG--AYFHYA 277 (309)
Q Consensus 200 ~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~--~~f~~~ 277 (309)
..++...++||+|++... ...+...++.++.++|||||.++|...... .+. ....+..+-. +.+ ++
T Consensus 194 ~~y~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~-------id~--g~~pe~~f~~ev~~L-~~ 261 (293)
T PTZ00146 194 QKYRMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIISIKANC-------IDS--TAKPEVVFASEVQKL-KK 261 (293)
T ss_pred hhhhcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccc-------ccc--CCCHHHHHHHHHHHH-HH
Confidence 112223457999999874 233445667799999999999988643221 111 1111111111 234 56
Q ss_pred CCCCCCceeeccCCCCCCCCcEEEEEEeC
Q 021661 278 GGYEPPQAVDISPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 278 ~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~ 306 (309)
+||++++.+++.|. +.|. .+|++++.
T Consensus 262 ~GF~~~e~v~L~Py--~~~h-~~v~~~~~ 287 (293)
T PTZ00146 262 EGLKPKEQLTLEPF--ERDH-AVVIGVYR 287 (293)
T ss_pred cCCceEEEEecCCc--cCCc-EEEEEEEc
Confidence 89999888887553 3333 55555544
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.5e-12 Score=115.73 Aligned_cols=91 Identities=16% Similarity=0.222 Sum_probs=65.5
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
++.+|||||||+|... .....+.+|+|+|+|+.|++.++++ +.|.+.|+ +.+ +++||+|+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl---~~l---~~~fD~Vv 217 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL---ESL---SGKYDTVT 217 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch---hhc---CCCcCEEE
Confidence 4789999999999643 2333467999999999999877654 35666776 443 47899999
Q ss_pred eccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 214 NVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 214 s~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|..+++|+++. ..+++.+.+ +.+||. +|++.
T Consensus 218 ~~~vL~H~p~~~~~~ll~~l~~-l~~g~l-iIs~~ 250 (315)
T PLN02585 218 CLDVLIHYPQDKADGMIAHLAS-LAEKRL-IISFA 250 (315)
T ss_pred EcCEEEecCHHHHHHHHHHHHh-hcCCEE-EEEeC
Confidence 99999998763 346666665 455555 55554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=113.37 Aligned_cols=95 Identities=8% Similarity=0.104 Sum_probs=77.2
Q ss_pred CCCeEEEECCCcc--hhc---cCCCCCCeEEEEeCCHHHHhhCCC----------CCcEEEecCCCCCCCCCCCCceeEE
Q 021661 148 PGVSILDLCSSWV--SHF---PPGYKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g--~~~---~~~~~~~~v~giD~S~~~l~~a~~----------~i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
++.+|+|||||.| +.+ ....+.++++|+|+++++++.|++ +++|.++|+ .+.+...+.||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da---~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV---MDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch---hhcccccCCcCEE
Confidence 4789999999955 222 234688899999999999987654 388999998 5544334679999
Q ss_pred Eeccchhcc--CCHHHHHHHHHhhcccCcEEEEEec
Q 021661 213 TNVVSVDYL--TKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 213 is~~vl~~l--~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++. +++++ .++.++++++++.|+|||.+++...
T Consensus 200 F~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 200 FLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred EEe-cccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 999 88887 6899999999999999999999763
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.8e-12 Score=109.62 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=73.0
Q ss_pred CCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCC--------------------CCCcEEEecCCCCCCCCCC-
Q 021661 148 PGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNP--------------------VLTEYVVQDLNLNPKLPFE- 205 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~--------------------~~i~~~~~D~~~~~~lp~~- 205 (309)
++.+|||+|||.|.. ...+..+.+|+|+|+|+.+++.+. ..++++++|+ .+++..
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~~ 110 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF---FALTAAD 110 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC---CCCCccc
Confidence 367999999998843 334456889999999999998731 1377899999 565532
Q ss_pred CCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEE
Q 021661 206 DNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+.||.|+-..+++|++. ....++.+.++|||||.+++.
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~ 151 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI 151 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 357999999999999963 357999999999999965443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=107.34 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=71.2
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC--------CCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP--------FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp--------~~~~sfDlVis 214 (309)
.++.+|||||||+|... ... .+.+.|+|+|+++ |.. ..+++++++|+ .+.+ +.+++||+|+|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~~--~~~v~~i~~D~---~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MDP--IVGVDFLQGDF---RDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-ccC--CCCcEEEecCC---CChHHHHHHHHHhCCCCCCEEec
Confidence 44789999999999643 222 3457999999998 322 23489999999 5532 55788999999
Q ss_pred ccchhccCCH-----------HHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSVDYLTKP-----------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l~d~-----------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+.+.++..++ ..+|+++.++|||||.+++.+..
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 8777665432 46899999999999999886543
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-12 Score=109.22 Aligned_cols=128 Identities=16% Similarity=0.258 Sum_probs=85.7
Q ss_pred CCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC------CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
.-.++||+|||.|.+... +....+++++|+|+.+++.|+++ +++.+.|+ ... .++++||+|+++.++++
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dv---p~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADV---PEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-T---TT----SS-EEEEEEES-GGG
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcC---CCC-CCCCCeeEEEEehHhHc
Confidence 357999999999965433 33356999999999999988763 89999999 443 46789999999999999
Q ss_pred cCC---HHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 221 LTK---PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 221 l~d---~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
+.+ ...++..+...|+|||.+++.... .+....|.... ..+.+.+.|++ -+..++-+.+
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~r----d~~c~~wgh~~---ga~tv~~~~~~--~~~~~~~~~~ 180 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHAR----DANCRRWGHAA---GAETVLEMLQE--HLTEVERVEC 180 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-----HHHHHHTT-S-----HHHHHHHHHH--HSEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEec----CCcccccCccc---chHHHHHHHHH--HhhheeEEEE
Confidence 975 457899999999999999886542 33444565432 34566666663 2555544444
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=105.94 Aligned_cols=97 Identities=16% Similarity=0.226 Sum_probs=68.8
Q ss_pred CCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||+|||+|..... .....+|+++|+|+.+++.++++ +.++.+|+ .. .+++++||+|+++--
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~---~~-~~~~~~fD~Vi~npP 110 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDW---AR-AVEFRPFDVVVSNPP 110 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECch---hh-hccCCCeeEEEECCC
Confidence 3468999999998854321 12234999999999999876653 56777887 33 235678999999743
Q ss_pred hhccC---------------------CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 218 VDYLT---------------------KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 218 l~~l~---------------------d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
..... ....+++++.++|||||.+++..+.
T Consensus 111 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 111 YVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 22111 1356889999999999988875444
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.3e-11 Score=103.23 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=72.3
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC-CCC
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK-LPF 204 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~-lp~ 204 (309)
.+...+.. .++.+|||+|||+|.. +....+..+|+++|+|+.|++.++++ ++++.+|+ .. ++.
T Consensus 31 ~l~~~l~~--~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~---~~~~~~ 105 (196)
T PRK07402 31 LLISQLRL--EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSA---PECLAQ 105 (196)
T ss_pred HHHHhcCC--CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECch---HHHHhh
Confidence 33444442 4578999999999964 23334678999999999999877653 67888887 33 222
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
....+|.|+... ..+...+++++.++|||||.+++...+
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 223367765532 235689999999999999999988765
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-11 Score=116.22 Aligned_cols=145 Identities=19% Similarity=0.233 Sum_probs=98.6
Q ss_pred CCCCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC----CCCCcee
Q 021661 147 TPGVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP----FEDNSFD 210 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp----~~~~sfD 210 (309)
.++.+|||+|||.|.. +... ...++|+++|+++.+++.++++ ++++++|+ ..++ ...++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~---~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADS---RNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCCh---hhcccccccccccCC
Confidence 4578999999998843 2222 3457999999999999877653 67888998 5554 3457899
Q ss_pred EEEec------cchhccCC----------------HHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhH
Q 021661 211 VITNV------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVM 268 (309)
Q Consensus 211 lVis~------~vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~ 268 (309)
.|++. .++.+-++ ..++|.++.++|||||.++.++..-. ..++..
T Consensus 328 ~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~-------------~~Ene~ 394 (434)
T PRK14901 328 RILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH-------------PAENEA 394 (434)
T ss_pred EEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-------------hhhHHH
Confidence 99963 34544433 35789999999999999988865421 223334
Q ss_pred hHHHHHHHhCCCCCCceee-ccCCCCCCCCcEEEEEEeCC
Q 021661 269 IVGAYFHYAGGYEPPQAVD-ISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 269 ~~~~~f~~~~Gf~~~~~~~-~~~~~~~~~p~~~v~a~k~~ 307 (309)
.+..++++..+|+...... .-|..++.|.||+..-+|.+
T Consensus 395 ~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k~~ 434 (434)
T PRK14901 395 QIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRKKS 434 (434)
T ss_pred HHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEeCC
Confidence 4455555555665332211 33444568999999988864
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-12 Score=109.26 Aligned_cols=93 Identities=18% Similarity=0.228 Sum_probs=70.8
Q ss_pred CCCeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 148 PGVSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 148 ~~~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
++.++||+|||.|+ .+.++..+..|+++|+|+..++.+++ .++..+.|+ ....++ +.||+|++..+++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl---~~~~~~-~~yD~I~st~v~~ 105 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADL---NDFDFP-EEYDFIVSTVVFM 105 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BG---CCBS-T-TTEEEEEEESSGG
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecc---hhcccc-CCcCEEEEEEEec
Confidence 36799999999884 34445568899999999999886443 277889998 666664 5799999999999
Q ss_pred ccC--CHHHHHHHHHhhcccCcEEEEE
Q 021661 220 YLT--KPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 220 ~l~--d~~~~l~~i~rvLkpGG~lii~ 244 (309)
|++ ...+++++|...++|||++++.
T Consensus 106 fL~~~~~~~i~~~m~~~~~pGG~~li~ 132 (192)
T PF03848_consen 106 FLQRELRPQIIENMKAATKPGGYNLIV 132 (192)
T ss_dssp GS-GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhhcCCcEEEEEE
Confidence 995 3468999999999999987664
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-11 Score=113.03 Aligned_cols=92 Identities=8% Similarity=0.046 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.+..+|||||||+|.. +...+|..+++++|. +.+++.+++ +++++.+|+ .+.+++ .+|+|++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~---~~~~~~--~~D~v~~ 221 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI---YKESYP--EADAVLF 221 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCc---cCCCCC--CCCEEEe
Confidence 4468999999999854 345568889999998 788887654 378999998 544444 3699999
Q ss_pred ccchhccCCH--HHHHHHHHhhcccCcEEEEE
Q 021661 215 VVSVDYLTKP--IEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 215 ~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~ 244 (309)
..++|+..+. .++|++++++|||||.++|.
T Consensus 222 ~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 222 CRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred EhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999988654 57999999999999977554
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-11 Score=104.57 Aligned_cols=93 Identities=22% Similarity=0.078 Sum_probs=70.4
Q ss_pred CCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 149 GVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
+.+|||+|||+|...... ..+.+|+++|+|++|++.++++ ++++.+|+ ...+ .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDL---FKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEccc---cccc--CCcccEEEECCCCCC
Confidence 578999999998543222 2233899999999999987764 56788887 4433 458999999987766
Q ss_pred cCC---------------------HHHHHHHHHhhcccCcEEEEEec
Q 021661 221 LTK---------------------PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 221 l~d---------------------~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+ ...+++++.++|||||.+++..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~ 141 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQS 141 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEe
Confidence 643 35689999999999998877644
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-11 Score=114.07 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=72.5
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
..+|||+|||+|.. +....+..+|+++|+|+.|++.++++ .+++..|. .. ..+++||+|+|+..+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~---~~--~~~~~fDlIvsNPPF 271 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNV---FS--DIKGRFDMIISNPPF 271 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEccc---cc--ccCCCccEEEECCCc
Confidence 45899999999854 34445677999999999999988753 45666676 22 125689999999888
Q ss_pred hccC-----CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 219 DYLT-----KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 219 ~~l~-----d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|+.. ...++++++.+.|||||.++|....
T Consensus 272 H~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 272 HDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred cCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 8632 3578999999999999988876554
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-11 Score=114.76 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=77.4
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-----------CcEEEecCCCCC
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNP 200 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-----------i~~~~~D~~~~~ 200 (309)
.+++.+.++. ....+|||+|||+|.. +....|..+|+++|+|+.|++.++++ ++++..|. .
T Consensus 217 trllL~~lp~--~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~---l 291 (378)
T PRK15001 217 ARFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA---L 291 (378)
T ss_pred HHHHHHhCCc--ccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccc---c
Confidence 3455666664 2246999999998843 34556788999999999999987753 36666776 2
Q ss_pred CCCCCCCceeEEEeccchhccC---C--HHHHHHHHHhhcccCcEEEEEec
Q 021661 201 KLPFEDNSFDVITNVVSVDYLT---K--PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 201 ~lp~~~~sfDlVis~~vl~~l~---d--~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
. ..++++||+|+|+--+|... + ..++++++.++|||||.+++...
T Consensus 292 ~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 292 S-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred c-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 2 12346899999987665432 2 35789999999999998888743
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.1e-11 Score=101.72 Aligned_cols=95 Identities=21% Similarity=0.262 Sum_probs=70.8
Q ss_pred CCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
..+|||+|||+|. .+....+..+|+++|+|+.+++.++++ ++++..|+. +.+ ++++||+|+++--
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~--~~~--~~~~fD~Iv~NPP 107 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLF--EAL--PDGKFDLIVSNPP 107 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTT--TTC--CTTCEEEEEE---
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccc--ccc--cccceeEEEEccc
Confidence 6799999999883 334455666899999999999987653 567888872 223 3688999999976
Q ss_pred hhccCC-----HHHHHHHHHhhcccCcEEEEEecC
Q 021661 218 VDYLTK-----PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 218 l~~l~d-----~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++.-.+ ..+++++..+.|||||.+++....
T Consensus 108 ~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 108 FHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred hhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 554433 478999999999999988765543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.2e-11 Score=107.75 Aligned_cols=87 Identities=13% Similarity=0.139 Sum_probs=64.9
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
++.+|||||||+|.... .+..+.+|+|+|+|+.|++.|++ ++++.++|+ .. .+++||+|++..+
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~---~~~~fD~v~~~~~ 136 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL---ES---LLGRFDTVVCLDV 136 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc---hh---ccCCcCEEEEcch
Confidence 46799999999995432 22235679999999999987765 256777775 33 3578999999999
Q ss_pred hhccCC--HHHHHHHHHhhcccCcE
Q 021661 218 VDYLTK--PIEVFKEMCQVLKPGGL 240 (309)
Q Consensus 218 l~~l~d--~~~~l~~i~rvLkpGG~ 240 (309)
++|+++ ...+++++.+.+++++.
T Consensus 137 l~~~~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 137 LIHYPQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hhcCCHHHHHHHHHHHHhhcCCeEE
Confidence 999864 46788898887654333
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-11 Score=106.18 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=67.2
Q ss_pred CeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCC--CCCCCCC--CCceeEEEeccchhccC
Q 021661 150 VSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNL--NPKLPFE--DNSFDVITNVVSVDYLT 222 (309)
Q Consensus 150 ~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~--~~~lp~~--~~sfDlVis~~vl~~l~ 222 (309)
..++|+|||+|....- +....+|+|+|+|+.||+.+++. +.+...-... .+..++. ++|.|+|++..++||+
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF- 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF- 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh-
Confidence 4899999999943322 22256899999999999999875 2221111100 0223333 8999999999999999
Q ss_pred CHHHHHHHHHhhcccCc-EEEE
Q 021661 223 KPIEVFKEMCQVLKPGG-LAIV 243 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG-~lii 243 (309)
|.+.+.++++|+||+.| ++.+
T Consensus 114 dle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 114 DLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred chHHHHHHHHHHcCCCCCEEEE
Confidence 88999999999999977 5544
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=104.84 Aligned_cols=91 Identities=19% Similarity=0.194 Sum_probs=70.0
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|... ... .+.++|+++|+++++++.+++ +++++++|+ .....+.+.||+|++
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~---~~~~~~~~~fD~I~~ 151 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG---TLGYEENAPYDRIYV 151 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---ccCCCcCCCcCEEEE
Confidence 45889999999999543 222 345799999999999988765 378899998 554445678999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
....++++ +.+.+.|||||.+++...
T Consensus 152 ~~~~~~~~------~~l~~~LkpgG~lvi~~~ 177 (212)
T PRK13942 152 TAAGPDIP------KPLIEQLKDGGIMVIPVG 177 (212)
T ss_pred CCCcccch------HHHHHhhCCCcEEEEEEc
Confidence 88766543 467778999999888654
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=110.29 Aligned_cols=120 Identities=13% Similarity=0.147 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCC-CCeEEEEeCCHHHHhhCCCC---------CcEEEecCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDLN 197 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~-~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~ 197 (309)
.....+.+...++ ++.+|||+|||+|... ....+ ..+|+|+|+|++||+.+.++ +.++++|+
T Consensus 50 l~~~~~~ia~~~~----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~- 124 (301)
T TIGR03438 50 LERHADEIAAATG----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADF- 124 (301)
T ss_pred HHHHHHHHHHhhC----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcc-
Confidence 3334444444443 3679999999999532 22333 57899999999999876542 45689998
Q ss_pred CCCC-CCCCCC----ceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhh
Q 021661 198 LNPK-LPFEDN----SFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI 257 (309)
Q Consensus 198 ~~~~-lp~~~~----sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~ 257 (309)
.. +++... ...++++..++.+++ +...+|++++++|+|||.++|.+............
T Consensus 125 --~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~~~~~~~~a 189 (301)
T TIGR03438 125 --TQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVKDPAVLEAA 189 (301)
T ss_pred --cchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHh
Confidence 43 333332 233455556788875 35679999999999999999987654444333333
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-10 Score=106.28 Aligned_cols=94 Identities=17% Similarity=0.306 Sum_probs=71.0
Q ss_pred CeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEec--
Q 021661 150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV-- 215 (309)
Q Consensus 150 ~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~-- 215 (309)
.+|||+|||+|.. +....+..+|+|+|+|+.+++.|+++ ++++++|+ .+ ++++++||+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~---~~-~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL---FE-PLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hc-cCcCCCccEEEECCC
Confidence 6999999999853 33345667999999999999887753 67888988 33 3344579999996
Q ss_pred -----------cchhccC------------CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 216 -----------VSVDYLT------------KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 216 -----------~vl~~l~------------d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.++.|-+ ....+++++.+.|+|||.+++++.+
T Consensus 192 yi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~ 246 (284)
T TIGR00536 192 YIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN 246 (284)
T ss_pred CCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 1222222 3467899999999999999998764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=111.05 Aligned_cols=143 Identities=17% Similarity=0.251 Sum_probs=91.7
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
.++.+|||+|||+|... ....+..+|+++|+|+.|++.++++ ++++++|+ ..++ +..++||.|++
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~---~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDA---RDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCc---ccchhhcccCCCCEEEE
Confidence 46889999999988532 2333447999999999999887654 56888998 5543 34568999994
Q ss_pred cc------chh------ccCC----------HHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHH
Q 021661 215 VV------SVD------YLTK----------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGA 272 (309)
Q Consensus 215 ~~------vl~------~l~d----------~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~ 272 (309)
.- ++. |... ..++|.++.++|||||.+++++...... +....+..
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~-------------Ene~~v~~ 386 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPE-------------ENEQQIKA 386 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChh-------------hCHHHHHH
Confidence 21 221 1111 2478999999999999999887642111 11122222
Q ss_pred HHHHhCCCCCCc-------eeeccCCCCCCCCcEEEEEEe
Q 021661 273 YFHYAGGYEPPQ-------AVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 273 ~f~~~~Gf~~~~-------~~~~~~~~~~~~p~~~v~a~k 305 (309)
++.+..+|+... ...+.|..++.|.||+..-+|
T Consensus 387 ~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k 426 (427)
T PRK10901 387 FLARHPDAELLDTGTPQQPGRQLLPGEEDGDGFFYALLIK 426 (427)
T ss_pred HHHhCCCCEEecCCCCCCCceEECCCCCCCCCeEEEEEEE
Confidence 333223333211 134455556789999988877
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.4e-11 Score=103.53 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCcchhcc---CC-CCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP---PG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~-~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|.... .. .+.++|+++|+++++++.|++ +++++++|+ .......++||+|++
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~---~~~~~~~~~fD~Ii~ 152 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDG---TQGWEPLAPYDRIYV 152 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCc---ccCCcccCCCCEEEE
Confidence 458899999999995432 22 234679999999999998765 377889998 444334468999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.....++ .+.+.+.|||||.+++.+..
T Consensus 153 ~~~~~~~------~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 153 TAAGPKI------PEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred cCCcccc------cHHHHHhcCcCcEEEEEEcC
Confidence 8766554 35688899999999886543
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.3e-10 Score=110.77 Aligned_cols=98 Identities=21% Similarity=0.208 Sum_probs=71.1
Q ss_pred CCCCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCCC-----C--cE--EEecCCCCCCCCC--CCCceeEE
Q 021661 147 TPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVL-----T--EY--VVQDLNLNPKLPF--EDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~-----i--~~--~~~D~~~~~~lp~--~~~sfDlV 212 (309)
.++.+|||+|||.|. .+....+.++|+|+|+|+++++.++++ + .+ ..+|. ...+. ++++||.|
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~---~~~~~~~~~~~fD~V 313 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG---RGPSQWAENEQFDRI 313 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc---ccccccccccccCEE
Confidence 457899999999883 233333467999999999999877654 2 23 44555 33332 45789999
Q ss_pred Eec------cchhccCC----------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 213 TNV------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 213 is~------~vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++. .++++.++ ..++|.++.++|||||.+++++..
T Consensus 314 llDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 314 LLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred EEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 952 35655544 357999999999999999998775
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-11 Score=104.53 Aligned_cols=94 Identities=12% Similarity=0.089 Sum_probs=72.8
Q ss_pred CCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCC--------------------CCCcEEEecCCCCCCCCCC-
Q 021661 148 PGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNP--------------------VLTEYVVQDLNLNPKLPFE- 205 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~--------------------~~i~~~~~D~~~~~~lp~~- 205 (309)
++.+|||+|||.|.. ...+..+.+|+|+|+|+.+++.+. .++++.++|+ .+++..
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~---~~l~~~~ 113 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF---FALTAAD 113 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc---cCCCccc
Confidence 367999999998843 334456889999999999998641 1367889998 565432
Q ss_pred CCceeEEEeccchhccCC--HHHHHHHHHhhcccCcE-EEEE
Q 021661 206 DNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGL-AIVS 244 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~-lii~ 244 (309)
.+.||+|+-..+++|++. ..++++.+.++|||||. +++.
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 357999999999999963 46899999999999995 4433
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-10 Score=99.90 Aligned_cols=95 Identities=19% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCCCeEEEECCCcchhcc----CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC--------CCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP----PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP--------FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~----~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp--------~~~~sfDlVis 214 (309)
.++.+|||+|||+|.... ...+..+|+|+|+|+.+ ...+++++++|+ .+.+ +++++||+|++
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---~~~~i~~~~~d~---~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---PIENVDFIRGDF---TDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---cCCCceEEEeeC---CChhHHHHHHHHhCCCCccEEEc
Confidence 458899999999985432 22345689999999976 224588899998 4432 34668999998
Q ss_pred ccch--------hcc---CCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSV--------DYL---TKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl--------~~l---~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.... +|. .+...++.++.++|+|||.+++....
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 6432 221 12368999999999999999887543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.6e-10 Score=100.52 Aligned_cols=140 Identities=18% Similarity=0.197 Sum_probs=100.2
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC--CCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP--FEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp--~~~~sfDlVi 213 (309)
...+|||+|||.|.. +....+..+|+|+|+.++|.+.|+++ +++++.|+ .++. ....+||+|+
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di---~~~~~~~~~~~fD~Ii 120 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI---KEFLKALVFASFDLII 120 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhH---HHhhhcccccccCEEE
Confidence 378999999998843 23333568999999999999988764 88999999 4442 3345799999
Q ss_pred eccchh----------------cc--CCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH
Q 021661 214 NVVSVD----------------YL--TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH 275 (309)
Q Consensus 214 s~~vl~----------------~l--~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~ 275 (309)
|+--.. |. .+.+++++...++|||||.+.+-.+. +.+.-+-+.+
T Consensus 121 ~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-----------------erl~ei~~~l- 182 (248)
T COG4123 121 CNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-----------------ERLAEIIELL- 182 (248)
T ss_pred eCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-----------------HHHHHHHHHH-
Confidence 982111 11 24578999999999999988765331 1111122223
Q ss_pred HhCCCCCCceeeccCCCCCCCCcEEEEEEeCCC
Q 021661 276 YAGGYEPPQAVDISPNPGRSDPMYVVYSRKAST 308 (309)
Q Consensus 276 ~~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~~ 308 (309)
...+|.+.++..+-|..+..-....|-++|-+.
T Consensus 183 ~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 183 KSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred HhcCCCceEEEEecCCCCCcceEEEEEEecCCC
Confidence 346799999999988887777778888888654
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-10 Score=108.87 Aligned_cols=99 Identities=20% Similarity=0.241 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||+|||+|..+ ..+..+.+++|+|+++.|++.++++ ++++++|+ .++|+.+++||+|+++--
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~---~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDA---TKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecch---hcCCcccCCCCEEEECCC
Confidence 45789999999999654 3334567999999999999876654 57889999 788887889999999632
Q ss_pred hh------c--cCC-HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 218 VD------Y--LTK-PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 218 l~------~--l~d-~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.. . ..+ ..++++++.++|||||.+++.+++.
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 11 1 111 4789999999999999998877754
|
This family is found exclusively in the Archaea. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.1e-11 Score=112.03 Aligned_cols=95 Identities=11% Similarity=0.077 Sum_probs=69.4
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCC-CCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPF-EDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~-~~~sfDlVis~~v 217 (309)
+.+|||+|||+|... ....+..+|+|+|+|+.|++.++++ ++++++|+ .+..+ ..++||+|+|+--
T Consensus 252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl---~e~~l~~~~~FDLIVSNPP 328 (423)
T PRK14966 252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSW---FDTDMPSEGKWDIIVSNPP 328 (423)
T ss_pred CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcch---hccccccCCCccEEEECCC
Confidence 569999999999543 3345778999999999999988764 67889998 33222 2457999999641
Q ss_pred hh-----cc----------------CC----HHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VD-----YL----------------TK----PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~-----~l----------------~d----~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.. .+ .| ...+++++.+.|+|||.++++..
T Consensus 329 YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG 382 (423)
T PRK14966 329 YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHG 382 (423)
T ss_pred CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 10 00 01 24677888899999999988765
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=101.87 Aligned_cols=117 Identities=20% Similarity=0.292 Sum_probs=82.0
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+|||+|||+|.. +....+..+++|+|+|+.+++.++++ ++++++|+ .. ++++++||+|+++.-
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~---~~-~~~~~~fD~Vi~npP 163 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDW---FE-PLPGGKFDLIVSNPP 163 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hc-cCcCCceeEEEECCC
Confidence 56999999998854 33345677999999999999987653 67888888 43 345678999998632
Q ss_pred hh------ccC--------------------CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHH
Q 021661 218 VD------YLT--------------------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVG 271 (309)
Q Consensus 218 l~------~l~--------------------d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~ 271 (309)
.. .+. ....+++++.++|||||.++++... .....+.
T Consensus 164 y~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~-----------------~~~~~~~ 226 (251)
T TIGR03534 164 YIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY-----------------DQGEAVR 226 (251)
T ss_pred CCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc-----------------cHHHHHH
Confidence 21 111 1246789999999999999887531 1123345
Q ss_pred HHHHHhCCCCCCceee
Q 021661 272 AYFHYAGGYEPPQAVD 287 (309)
Q Consensus 272 ~~f~~~~Gf~~~~~~~ 287 (309)
+++. ..||..++...
T Consensus 227 ~~l~-~~gf~~v~~~~ 241 (251)
T TIGR03534 227 ALFE-AAGFADVETRK 241 (251)
T ss_pred HHHH-hCCCCceEEEe
Confidence 5554 37888776544
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-10 Score=110.21 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=78.4
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCC--CCCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL--PFEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~l--p~~~~sfDlVis 214 (309)
.+..+||||||+|..+ +...|...++|+|+++.|++.+.+ ++.++++|+ ..+ .++++++|.|++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA---~~ll~~~~~~s~D~I~l 198 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDA---RLLLELLPSNSVEKIFV 198 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH---HHhhhhCCCCceeEEEE
Confidence 3569999999999543 445678899999999999876543 478999998 443 467899999998
Q ss_pred ccchhccCCH------HHHHHHHHhhcccCcEEEEEecCcchh
Q 021661 215 VVSVDYLTKP------IEVFKEMCQVLKPGGLAIVSFSNRCFW 251 (309)
Q Consensus 215 ~~vl~~l~d~------~~~l~~i~rvLkpGG~lii~~~~~~~~ 251 (309)
++...|.... ..+++++.|+|||||.+.+.+......
T Consensus 199 nFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~ 241 (390)
T PRK14121 199 HFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSELYF 241 (390)
T ss_pred eCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECHHHH
Confidence 7655443222 589999999999999999887765443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2e-10 Score=111.77 Aligned_cols=156 Identities=18% Similarity=0.195 Sum_probs=93.3
Q ss_pred CCCCeEEEECCCcchh---ccC-CCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH---FPP-GYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~-~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|.. +.. ....++|+++|+|+.|++.++++ ++++++|+ ..++ ++++||+|++
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da---~~~~-~~~~fD~Vl~ 324 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDA---RSFS-PEEQPDAILL 324 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcc---cccc-cCCCCCEEEE
Confidence 4578999999998842 222 23456999999999999877653 67888998 5554 4568999995
Q ss_pred c------cchhccC----------------CHHHHHHHHHhhcccCcEEEEEecCcc--hhHHHhhhhhcCC-CCchhHh
Q 021661 215 V------VSVDYLT----------------KPIEVFKEMCQVLKPGGLAIVSFSNRC--FWTKAISIWTSTG-DADHVMI 269 (309)
Q Consensus 215 ~------~vl~~l~----------------d~~~~l~~i~rvLkpGG~lii~~~~~~--~~~~~~~~w~~~~-~~~h~~~ 269 (309)
. .++..-+ ...++|.++.++|||||.+++++.... -....+..+.... +...+..
T Consensus 325 D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~ 404 (445)
T PRK14904 325 DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPEFSAEPS 404 (445)
T ss_pred cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCEEecc
Confidence 2 1221111 124689999999999999999887532 2222333332221 1111110
Q ss_pred HH---HHHHHhCCCCCCceeeccCCCC-CCCCcEEEEEEeCCC
Q 021661 270 VG---AYFHYAGGYEPPQAVDISPNPG-RSDPMYVVYSRKAST 308 (309)
Q Consensus 270 ~~---~~f~~~~Gf~~~~~~~~~~~~~-~~~p~~~v~a~k~~~ 308 (309)
.. ..+... ......+.+.|... +.|++|+..-+|.++
T Consensus 405 ~~~l~~~~~~~--~~~~~~~~~~P~~~~~~dGfF~a~l~k~~~ 445 (445)
T PRK14904 405 PGSLPEPFHEV--AHPKGAILTLPGEHEGFDGGFAQRLRKNAG 445 (445)
T ss_pred ccccccccccc--cCCCCcEEECCCCCCCCCcEEEEEEEecCC
Confidence 00 011100 00111233444433 569999999999763
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.5e-10 Score=104.96 Aligned_cols=91 Identities=15% Similarity=0.166 Sum_probs=66.9
Q ss_pred CCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||+|||+|.... ......+|+|+|+|+.|++.++++ +.+...|. .+..+++||+|+++.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~-----~~~~~~~fDlVvan~ 233 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYL-----EQPIEGKADVIVANI 233 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccc-----ccccCCCceEEEEec
Confidence 47899999999985432 123345899999999999988765 22333332 223456899999987
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+. ...++.++.++|||||.++++..
T Consensus 234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 234 LAEV---IKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred CHHH---HHHHHHHHHHHcCCCcEEEEEeC
Confidence 6543 46789999999999999998744
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.2e-10 Score=104.10 Aligned_cols=95 Identities=17% Similarity=0.282 Sum_probs=70.2
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
+.+|||+|||+|.. +....+..+|+|+|+|+.+++.|+++ ++++++|+. +. +++++||+|+++-
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~--~~--~~~~~fD~Iv~NP 197 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLF--AA--LPGRKYDLIVSNP 197 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh--hc--cCCCCccEEEECC
Confidence 56999999998853 33345678999999999999987653 678889972 22 3456799999961
Q ss_pred ------chhcc-----CC--------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 217 ------SVDYL-----TK--------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 217 ------vl~~l-----~d--------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.+.++ .+ ...+++++.++|||||.+++++.+
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~ 253 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN 253 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 11111 11 257789999999999999998764
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.7e-11 Score=109.34 Aligned_cols=104 Identities=27% Similarity=0.451 Sum_probs=71.3
Q ss_pred CCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC------------------CcEEEecCCCC---CCCCC
Q 021661 148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL------------------TEYVVQDLNLN---PKLPF 204 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~------------------i~~~~~D~~~~---~~lp~ 204 (309)
++.+|||||||-|.-+.. ...-..++|+|+|...|+.|+++ ..|+.+|.... ..++.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 688999999996643322 22456999999999999877653 45677776321 11222
Q ss_pred CCCceeEEEeccchhccC----CHHHHHHHHHhhcccCcEEEEEecCcchh
Q 021661 205 EDNSFDVITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSNRCFW 251 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~----d~~~~l~~i~rvLkpGG~lii~~~~~~~~ 251 (309)
....||+|.|.++||+.= ....+|+++...|||||.++.++++...+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i 192 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEI 192 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence 335899999999999973 24679999999999999999999875544
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.9e-10 Score=103.60 Aligned_cols=93 Identities=20% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCCCcEEEe-cCCCCCCCCCCCCceeEEEeccchhccCCH
Q 021661 148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVLTEYVVQ-DLNLNPKLPFEDNSFDVITNVVSVDYLTKP 224 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~i~~~~~-D~~~~~~lp~~~~sfDlVis~~vl~~l~d~ 224 (309)
++.+|||+|||+|..... .....+|+|+|+|+.|++.|+++...-.. +. ..++..+.+||+|+++...+ ..
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~---~~~~~~~~~fD~Vvani~~~---~~ 192 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELN---VYLPQGDLKADVIVANILAN---PL 192 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCce---EEEccCCCCcCEEEEcCcHH---HH
Confidence 478999999999854321 22233699999999999998876322111 11 11222222799999976433 24
Q ss_pred HHHHHHHHhhcccCcEEEEEec
Q 021661 225 IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 225 ~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+++++.++|||||.++++..
T Consensus 193 ~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 193 LELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred HHHHHHHHHhcCCCcEEEEEEC
Confidence 6789999999999999998743
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-10 Score=86.20 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=73.0
Q ss_pred eEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCC--------CCCcEEEecCCCCCCCCC-CCCceeEEEeccchh
Q 021661 151 SILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPF-EDNSFDVITNVVSVD 219 (309)
Q Consensus 151 ~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~--------~~i~~~~~D~~~~~~lp~-~~~sfDlVis~~vl~ 219 (309)
+|||+|||.|...... ....+++++|+++.+++.++ .++.++..|. .+... ..++||+|++..+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA---EELPPEADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcCh---hhhccccCCceEEEEEcccee
Confidence 5899999988543221 35679999999999887665 1378888888 44442 457899999999999
Q ss_pred c-cCCHHHHHHHHHhhcccCcEEEEE
Q 021661 220 Y-LTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 220 ~-l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+ ..+...+++.+.+.|||||.++++
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 9 778899999999999999998876
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.5e-11 Score=95.08 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=70.5
Q ss_pred CCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 149 GVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
|.+|||+|||+|.... ... ..+++|+|+++..++.++.+ ++++++|+ .... +++++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA---RDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH---HHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch---hhchhhccCceeEEEEE
Confidence 4589999999995432 222 57999999999999876652 68999998 5554 67789999999
Q ss_pred ccchhccC--------CHHHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~--------d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+--..... ....+++++.++|||||.+++.++
T Consensus 77 npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 86554321 236889999999999999887765
|
... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-09 Score=98.40 Aligned_cols=96 Identities=18% Similarity=0.267 Sum_probs=69.8
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||+|||+|.. +....+..+|+|+|+|+.+++.++++ +.++++|+ .. ++.+++||+|+++
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~---~~-~~~~~~fD~Iv~n 182 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW---FE-PLPGGRFDLIVSN 182 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccc---cC-cCCCCceeEEEEC
Confidence 3467999999998853 33345678999999999999876653 67888887 22 2235789999986
Q ss_pred cch------h--------c------------cCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 216 VSV------D--------Y------------LTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 216 ~vl------~--------~------------l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.-. + | +.....+++++.++|||||.++++..
T Consensus 183 pPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g 239 (275)
T PRK09328 183 PPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIG 239 (275)
T ss_pred CCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEEC
Confidence 211 1 1 11236788999999999999998753
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7e-10 Score=107.48 Aligned_cols=98 Identities=18% Similarity=0.331 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCcchh---cc-CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC-CCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSH---FP-PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~-~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp-~~~~sfDlVi 213 (309)
.++.+|||+|||+|.. +. ...+.++|+++|+|+.+++.++++ +++.++|+ ..++ +.+++||.|+
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da---~~l~~~~~~~fD~Vl 312 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA---ERLTEYVQDTFDRIL 312 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hhhhhhhhccCCEEE
Confidence 4578999999998842 22 223567999999999999887653 57888998 6655 4457899999
Q ss_pred ec------cchhccC----------------CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 214 NV------VSVDYLT----------------KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 214 s~------~vl~~l~----------------d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+. .++..-+ ...++|.++.+.|||||.++.++..
T Consensus 313 ~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 313 VDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred ECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 62 2222212 1256799999999999999998875
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-09 Score=105.95 Aligned_cols=156 Identities=19% Similarity=0.203 Sum_probs=91.6
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC--CCCCceeEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP--FEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp--~~~~sfDlV 212 (309)
.++.+|||+|||+|... ... .+.++|+++|+++.+++.++++ ++++++|+ ..++ ++ ++||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~-~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDA---RKVHEKFA-EKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCc---ccccchhc-ccCCEE
Confidence 45789999999988532 222 2567999999999999876543 67889998 5543 23 679999
Q ss_pred Eecc------chhccCC----------------HHHHHHHHHhhcccCcEEEEEecCcc--hhHHHhhhhhcCC-CCchh
Q 021661 213 TNVV------SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSNRC--FWTKAISIWTSTG-DADHV 267 (309)
Q Consensus 213 is~~------vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~~~--~~~~~~~~w~~~~-~~~h~ 267 (309)
++.- ++.+-++ ...+|+++.++|||||.++.++.... -....+..+.... +..-+
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~~~ 404 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFELV 404 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcEEe
Confidence 9742 2222111 14689999999999999998765421 1122222222111 11111
Q ss_pred HhHHHHHHH-hCCCCCCceeeccCCCCCCCCcEEEEEEeCC
Q 021661 268 MIVGAYFHY-AGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 268 ~~~~~~f~~-~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
......... ... .....+.+.|..++.|.+|+..-+|.+
T Consensus 405 ~~~~~~~~~~~~~-~~~~~~r~~P~~~~~dGfF~a~l~k~~ 444 (444)
T PRK14902 405 PLQHEKPDELVYE-VKDGYLQILPNDYGTDGFFIAKLRKKG 444 (444)
T ss_pred ccccccccccccc-ccCCeEEECCCCCCCCCeEEEEEEECC
Confidence 110000000 000 011234445555678999999999864
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.8e-10 Score=103.97 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=69.8
Q ss_pred CeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc-
Q 021661 150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV- 216 (309)
Q Consensus 150 ~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~- 216 (309)
.+|||+|||+|.. +....+..+|+|+|+|+.+++.|+++ ++++++|+. +.+ ++++||+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~--~~l--~~~~fDlIvsNPP 210 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLF--AAL--PGRRYDLIVSNPP 210 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchh--hhC--CCCCccEEEECCC
Confidence 6899999999854 33345678999999999999987653 678888972 223 356799999872
Q ss_pred -----ch-------hccC------------CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 217 -----SV-------DYLT------------KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 217 -----vl-------~~l~------------d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.+ +|-+ ....+++++.++|||||.++++...
T Consensus 211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~ 265 (307)
T PRK11805 211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN 265 (307)
T ss_pred CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 11 1111 1257899999999999999998764
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-10 Score=98.98 Aligned_cols=96 Identities=23% Similarity=0.224 Sum_probs=81.9
Q ss_pred CCeEEEECCCcchhccCCC--CCCeEEEEeCCHHHHhhCCCC------CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 149 GVSILDLCSSWVSHFPPGY--KQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~--~~~~v~giD~S~~~l~~a~~~------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
...++|||||.|....... .-.+++-+|.|..|++.++.- ....++|- +.|++.++++|+|+++..+||
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DE---E~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDE---EFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecch---hcccccccchhhhhhhhhhhh
Confidence 4589999999885443332 245899999999999987653 67889998 899999999999999999999
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++|....+.++...|||+|.++-+.-.
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhc
Confidence 999999999999999999998876544
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-10 Score=96.26 Aligned_cols=95 Identities=22% Similarity=0.247 Sum_probs=69.1
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||+|||.|.... .+..+.+|+|+|+|++|++.++++ +.++++|+ .+ ++.+++||+|+++.
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~-~~~~~~~d~vi~n~ 98 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDL---FE-PFRGDKFDVILFNP 98 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccc---cc-cccccCceEEEECC
Confidence 47799999999885432 222368999999999999877432 66788887 33 33455899999876
Q ss_pred chhcc---------------------CCHHHHHHHHHhhcccCcEEEEEec
Q 021661 217 SVDYL---------------------TKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 vl~~l---------------------~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+.+. .....+++++.++|||||.+++..+
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 44321 1145689999999999998877654
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.9e-10 Score=98.35 Aligned_cols=91 Identities=14% Similarity=0.053 Sum_probs=67.5
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||+|||+|..... +....+|+++|+++++++.++++ +++..+|. .+...+.++||+|++...
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG---WKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc---ccCCCcCCCcCEEEEccC
Confidence 4578999999999853221 11135899999999999877652 67888887 332223478999999887
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++++ .+++.+.|+|||.+++.+.
T Consensus 154 ~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh------hHHHHHhcCCCcEEEEEEc
Confidence 7655 3567899999999988765
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=98.39 Aligned_cols=156 Identities=17% Similarity=0.093 Sum_probs=92.2
Q ss_pred CCCCeEEEECCCcchhc---cC-CCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PP-GYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~-~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||.|... .. ....+.|+++|+++.+++.++++ +.+++.|+ ..++...++||+|++
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~---~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDG---RVFGAAVPKFDAILL 146 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCH---HHhhhhccCCCEEEE
Confidence 45789999999988432 22 23356999999999999876653 57788887 555544567999995
Q ss_pred c------cchhccC----------------CHHHHHHHHHhhcccCcEEEEEecCcc--hhHHHhhhhhcCCCCchhH-h
Q 021661 215 V------VSVDYLT----------------KPIEVFKEMCQVLKPGGLAIVSFSNRC--FWTKAISIWTSTGDADHVM-I 269 (309)
Q Consensus 215 ~------~vl~~l~----------------d~~~~l~~i~rvLkpGG~lii~~~~~~--~~~~~~~~w~~~~~~~h~~-~ 269 (309)
. .++.+-+ ...++|+++.+.|||||.++.++.... -....++.+.......... .
T Consensus 147 D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~~~~~~ 226 (264)
T TIGR00446 147 DAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDVVEELP 226 (264)
T ss_pred cCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCcEEecc
Confidence 3 1222211 124699999999999999998876532 2233333333221110000 0
Q ss_pred HHH-HHHHhCCCC-CCceeeccCCCCCCCCcEEEEEEe
Q 021661 270 VGA-YFHYAGGYE-PPQAVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 270 ~~~-~f~~~~Gf~-~~~~~~~~~~~~~~~p~~~v~a~k 305 (309)
... ......+.. ....+.+.|..+..|.+|+..-+|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfF~a~l~k 264 (264)
T TIGR00446 227 KGDEFFGANKGKEEVKGALRVFPQIYDCEGFFVAKLRK 264 (264)
T ss_pred CCcccccccccccccCCeEEECCCCCCCCcEEEEEEEC
Confidence 000 001001111 122344555555689999888776
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.6e-10 Score=102.50 Aligned_cols=110 Identities=18% Similarity=0.295 Sum_probs=83.4
Q ss_pred CCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC--------------CcEEEecCCCC---CCCCCCCCc
Q 021661 148 PGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL--------------TEYVVQDLNLN---PKLPFEDNS 208 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~--------------i~~~~~D~~~~---~~lp~~~~s 208 (309)
++..+||+|||-|.-+..- ..-..++|+||++..+++|+++ +.|+.+|-... ..+++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 3779999999966444332 2345899999999999988763 57889987331 234455666
Q ss_pred eeEEEeccchhcc----CCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhh
Q 021661 209 FDVITNVVSVDYL----TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI 257 (309)
Q Consensus 209 fDlVis~~vl~~l----~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~ 257 (309)
||+|-|.+++|+- .....+|.++.+.|||||.+|-++|+...+.+.+..
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~ 249 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRA 249 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHh
Confidence 9999999999985 235679999999999999999999987666555443
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.3e-09 Score=87.63 Aligned_cols=94 Identities=23% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++++++|||||+|+.. ....|.++|+++|-++++++..++| ++.+.+|+- +.|+-.+ +||.|+..
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap--~~L~~~~-~~daiFIG 109 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAP--EALPDLP-SPDAIFIG 109 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccch--HhhcCCC-CCCEEEEC
Confidence 67899999999999532 3557899999999999999876654 788888882 2333222 79999998
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.. .+.+.+|+.+...|||||.+++....
T Consensus 110 Gg----~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 110 GG----GNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred CC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 87 36789999999999999999997664
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.1e-09 Score=95.80 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=93.9
Q ss_pred cchhhHHHhhcchhhhhhhCCCCCCCCCCChhHHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCCe
Q 021661 72 ANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVS 151 (309)
Q Consensus 72 ~r~~~~~~~~~~~v~~v~~~~~w~~~~p~~~e~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 151 (309)
++.+..+..+..|+.++.....|.. .++....+. |. |+.. ...+.+.....++. ...+.+
T Consensus 30 ~~~~~~rr~~~~Pl~yi~g~~~f~g---------~~~~v~~~v-f~--pr~~-------Te~Lv~~~l~~~~~-~~~~~~ 89 (251)
T TIGR03704 30 LAAMVDRRVAGLPLEHVLGWAEFCG---------LRIAVDPGV-FV--PRRR-------TEFLVDEAAALARP-RSGTLV 89 (251)
T ss_pred HHHHHHHHHcCCCHHHhcccCeEcC---------eEEEECCCC-cC--CCcc-------HHHHHHHHHHhhcc-cCCCCE
Confidence 5556666667789999998876331 112222222 11 2211 12223333333321 122458
Q ss_pred EEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-----CcEEEecCCCCCCCCC-CCCceeEEEeccc-----
Q 021661 152 ILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPF-EDNSFDVITNVVS----- 217 (309)
Q Consensus 152 ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-----i~~~~~D~~~~~~lp~-~~~sfDlVis~~v----- 217 (309)
|||+|||+|... ....++.+|+|+|+|+.+++.++++ .+++++|+. ..++. ..++||+|+++--
T Consensus 90 vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~--~~l~~~~~~~fDlVv~NPPy~~~~ 167 (251)
T TIGR03704 90 VVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLY--DALPTALRGRVDILAANAPYVPTD 167 (251)
T ss_pred EEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeech--hhcchhcCCCEeEEEECCCCCCch
Confidence 999999998433 3335567999999999999988765 578999982 22321 1357999998731
Q ss_pred -hhccC----------------C----HHHHHHHHHhhcccCcEEEEEec
Q 021661 218 -VDYLT----------------K----PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 -l~~l~----------------d----~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+..++ | ...+++.+.++|||||.++++..
T Consensus 168 ~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 168 AIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11110 1 34788888899999999998865
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-09 Score=96.36 Aligned_cols=105 Identities=22% Similarity=0.288 Sum_probs=79.1
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP 203 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp 203 (309)
.+++.+.++. ..+.+|||+|||+| ..+....|..+++.+|+|..+++.++++ ..++..|. ..+
T Consensus 147 S~lLl~~l~~--~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~----~~~ 220 (300)
T COG2813 147 SRLLLETLPP--DLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL----YEP 220 (300)
T ss_pred HHHHHHhCCc--cCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc----ccc
Confidence 4566677765 33459999999987 4556667888999999999999998876 24566666 233
Q ss_pred CCCCceeEEEeccchhccCCH-----HHHHHHHHhhcccCcEEEEEec
Q 021661 204 FEDNSFDVITNVVSVDYLTKP-----IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~-----~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+ +||+|+|+--+|--.+. .+++.+..+.|++||.|.|-..
T Consensus 221 v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 221 VEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 344 89999999888754332 4899999999999997766433
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=106.37 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=68.4
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
+.+|||+|||+|... ....+..+|+|+|+|+.+++.|+++ +.++++|+ .. ++++++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~---~~-~~~~~~fDlIvsNP 214 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW---FE-NIEKQKFDFIVSNP 214 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch---hh-hCcCCCccEEEECC
Confidence 468999999999533 3345778999999999999987764 56788886 22 23356899999952
Q ss_pred --------------chhccC------------CHHHHHHHHHhhcccCcEEEEEec
Q 021661 217 --------------SVDYLT------------KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 --------------vl~~l~------------d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++.|-+ ....+++++.++|||||.++++..
T Consensus 215 PYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig 270 (506)
T PRK01544 215 PYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 270 (506)
T ss_pred CCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 111111 124678889999999999998854
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.7e-10 Score=93.24 Aligned_cols=116 Identities=14% Similarity=0.259 Sum_probs=80.9
Q ss_pred HHHHHHHHHhhCCC--CCCCCCeEEEECCCcchhccCCC---CCCeEEEEeCCHHHHhhCCCC---------CcEEEecC
Q 021661 131 IAALTKYYSEVFPP--SNTPGVSILDLCSSWVSHFPPGY---KQDRIVGMGMNEEELKRNPVL---------TEYVVQDL 196 (309)
Q Consensus 131 ~~~l~~~~~~~l~~--~~~~~~~ILDiGcG~g~~~~~~~---~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~ 196 (309)
..++.+++...... ......+|||+|||.|..+.... -....+|+|.|+.+++.|+.. ++|.|.|+
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI 127 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDI 127 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeec
Confidence 34555555544431 01223499999999997654332 234699999999999876541 89999999
Q ss_pred CCCCCCCCCCCceeEEEeccchhccC--------CHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 197 NLNPKLPFEDNSFDVITNVVSVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 197 ~~~~~lp~~~~sfDlVis~~vl~~l~--------d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
..-.+..++||+|.=-..+..+. .+...+..+.++|+|||+++|+..|..
T Consensus 128 ---~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 128 ---TDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred ---cCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 44456678899998655554441 234678889999999999999877754
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-09 Score=93.98 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=56.6
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHH
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVF 228 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l 228 (309)
...|-|+|||-+...........|...|+-+. +-....+|+ .++|+++++.|+++++.+|.-. |...++
T Consensus 73 ~~viaD~GCGdA~la~~~~~~~~V~SfDLva~-------n~~Vtacdi---a~vPL~~~svDv~VfcLSLMGT-n~~~fi 141 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAP-------NPRVTACDI---ANVPLEDESVDVAVFCLSLMGT-NWPDFI 141 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S---EEEEESS-S-------STTEEES-T---TS-S--TT-EEEEEEES---SS--HHHHH
T ss_pred CEEEEECCCchHHHHHhcccCceEEEeeccCC-------CCCEEEecC---ccCcCCCCceeEEEEEhhhhCC-CcHHHH
Confidence 67999999998865544444568999998653 356889999 8999999999999999887754 899999
Q ss_pred HHHHhhcccCcEEEEE
Q 021661 229 KEMCQVLKPGGLAIVS 244 (309)
Q Consensus 229 ~~i~rvLkpGG~lii~ 244 (309)
+|+.|+|||||.|.|.
T Consensus 142 ~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 142 REANRVLKPGGILKIA 157 (219)
T ss_dssp HHHHHHEEEEEEEEEE
T ss_pred HHHHheeccCcEEEEE
Confidence 9999999999987664
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.6e-10 Score=95.34 Aligned_cols=96 Identities=18% Similarity=0.197 Sum_probs=64.5
Q ss_pred CCCeEEEECCCcch-------hccC----CCC-CCeEEEEeCCHHHHhhCCCC---------------------------
Q 021661 148 PGVSILDLCSSWVS-------HFPP----GYK-QDRIVGMGMNEEELKRNPVL--------------------------- 188 (309)
Q Consensus 148 ~~~~ILDiGcG~g~-------~~~~----~~~-~~~v~giD~S~~~l~~a~~~--------------------------- 188 (309)
+..+|+.+||++|. .+.. ..+ ..+|+|+|+|+.+|+.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 46799999999882 1111 111 35999999999999987651
Q ss_pred ---------CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 189 ---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 ---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+.|.+.|+ .+.+...+.||+|+|-+||-+++.. .++++.+++.|+|||+|++.-.
T Consensus 111 ~v~~~lr~~V~F~~~NL---~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNL---LDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--T---T-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEeccc---CCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 68899998 5533456789999999999999654 6899999999999999999743
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.3e-09 Score=95.83 Aligned_cols=97 Identities=22% Similarity=0.291 Sum_probs=73.2
Q ss_pred CCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 149 GVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
..+|||+|||+|.... ...+..+|+|+|+|+.|++.++++ ++++++|+ ..+.. +++||+|+++..+.+++
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~---~e~~~-~~kFDlIIsNPPF~~l~ 140 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDV---FEFES-NEKFDVVISNPPFGKIN 140 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECch---hhhcc-cCCCcEEEEcCCccccC
Confidence 5799999999995432 223357999999999999988764 78999999 55543 46799999988777752
Q ss_pred C--------------------HHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 223 K--------------------PIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 223 d--------------------~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
. ..++++....+|+|+|.+.+-.....
T Consensus 141 ~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 141 TTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred chhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 1 24677888899999997766655433
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-09 Score=98.05 Aligned_cols=90 Identities=20% Similarity=0.145 Sum_probs=66.5
Q ss_pred CCCCeEEEECCCcchhc---cCCCC-CCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYK-QDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~-~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|... ....+ .+.|+++|++++|++.|++ ++.++++|+ ...+...++||+|++
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~---~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG---YYGVPEFAPYDVIFV 155 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh---hhcccccCCccEEEE
Confidence 45789999999998533 22222 3579999999999987765 367888887 554444567999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
...+.+++ ..+.+.|+|||.+++..
T Consensus 156 ~~g~~~ip------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 156 TVGVDEVP------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CCchHHhH------HHHHHhcCCCCEEEEEe
Confidence 87766543 34678999999887753
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.9e-09 Score=91.70 Aligned_cols=95 Identities=16% Similarity=0.050 Sum_probs=74.0
Q ss_pred CCCeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHhhCCC--------------------CCcEEEecCCCCCCCCC--
Q 021661 148 PGVSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELKRNPV--------------------LTEYVVQDLNLNPKLPF-- 204 (309)
Q Consensus 148 ~~~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~~a~~--------------------~i~~~~~D~~~~~~lp~-- 204 (309)
++.+||+.|||.|. ...++..+.+|+|+|+|+..++.+.+ .++++++|+ -+++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~---f~l~~~~ 119 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI---FNLPKIA 119 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC---cCCCccc
Confidence 46899999999884 33344457799999999999987421 378999999 56642
Q ss_pred -CCCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEE-EEEe
Q 021661 205 -EDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLA-IVSF 245 (309)
Q Consensus 205 -~~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~l-ii~~ 245 (309)
..+.||+|+=..++++++. ..+..+.+.++|+|||.+ ++.+
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 1257999999999999963 468999999999999954 4443
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.8e-09 Score=96.25 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=70.1
Q ss_pred CCCeEEEECCCcchhcc--CCC-CCCeEEEEeCCHHHHhhCCCC-------------CcEEEecCCCCCCCCCCCCceeE
Q 021661 148 PGVSILDLCSSWVSHFP--PGY-KQDRIVGMGMNEEELKRNPVL-------------TEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~-~~~~v~giD~S~~~l~~a~~~-------------i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
.+.+||+||||.|.... ... ...+|+++|+++++++.+++. ++++.+|+. .-++..+++||+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~~~~~yDv 153 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGI--KFVAETENSFDV 153 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchH--HHHhhCCCcccE
Confidence 36799999999885542 223 346899999999999987652 567888872 123334578999
Q ss_pred EEeccchhccCC----HHHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~~vl~~l~d----~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|++...-.+.+. ..++++.+.++|+|||.+++...+
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 998643222211 267899999999999999886544
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-09 Score=96.73 Aligned_cols=96 Identities=17% Similarity=0.078 Sum_probs=70.4
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
++.+|||||||+|... ....+..+|+++|+++++++.|++. ++++.+|+. +.++...++||+|++.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~--~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGA--EYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHH--HHHHhCCCCCCEEEEe
Confidence 3679999999988543 3456788999999999999987642 677888872 1223234679999975
Q ss_pred cchhc--cC---CHHHHHHHHHhhcccCcEEEEEec
Q 021661 216 VSVDY--LT---KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 216 ~vl~~--l~---d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
. ++. .+ ...++++++.++|+|||.+++.+.
T Consensus 144 ~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 144 G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 3 221 11 136999999999999999988643
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-09 Score=97.39 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=67.6
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCC
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPF 204 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~ 204 (309)
..+++.++.. ++.+|||+|||+|... +......+|+|+|+++.+++.|++| .++..... .+.
T Consensus 151 cl~~l~~~~~----~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~---~~~-- 221 (295)
T PF06325_consen 151 CLELLEKYVK----PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLS---EDL-- 221 (295)
T ss_dssp HHHHHHHHSS----TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCT---SCT--
T ss_pred HHHHHHHhcc----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEe---ccc--
Confidence 3455555544 3789999999999543 2223345899999999999988875 22322222 222
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..+.||+|+++-..+- ....+..+.++|||||.++++
T Consensus 222 ~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 222 VEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEE
T ss_pred ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEc
Confidence 2478999999865442 357888899999999999998
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.7e-09 Score=95.83 Aligned_cols=90 Identities=22% Similarity=0.305 Sum_probs=64.4
Q ss_pred CCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-----Cc----EEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-----TE----YVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-----i~----~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||+|||+|... .......+|+|+|+.+-+++.+++| ++ ....+. ... ...+.||+|++|-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~---~~~-~~~~~~DvIVANI 237 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLL---LEV-PENGPFDVIVANI 237 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccc---hhh-cccCcccEEEehh
Confidence 4899999999999543 2223345799999999999988876 22 111111 111 2235899999986
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.-+- ...+..++.+.|||||.++++
T Consensus 238 LA~v---l~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 238 LAEV---LVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred hHHH---HHHHHHHHHHHcCCCceEEEE
Confidence 3221 358899999999999999998
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=94.86 Aligned_cols=98 Identities=13% Similarity=0.047 Sum_probs=69.4
Q ss_pred CCeEEEECCCcchhccCC---CCCCeEEEEeCCHHHHhhCCC---------------CCcEEEecCCCCCCCCCCCCcee
Q 021661 149 GVSILDLCSSWVSHFPPG---YKQDRIVGMGMNEEELKRNPV---------------LTEYVVQDLNLNPKLPFEDNSFD 210 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~---~~~~~v~giD~S~~~l~~a~~---------------~i~~~~~D~~~~~~lp~~~~sfD 210 (309)
+.+||+||||.|..+... .+..+|+++|++++|++.|++ +++++.+|+. .-++...++||
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~--~fL~~~~~~YD 228 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAK--EFLSSPSSLYD 228 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHH--HHHHhcCCCcc
Confidence 679999999988544322 234699999999999998874 2667788872 22344456899
Q ss_pred EEEeccch--h-ccCC--HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 211 VITNVVSV--D-YLTK--PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 211 lVis~~vl--~-~l~d--~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+|++...- . .... -.++++.+++.|+|||.+++...++
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp 271 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP 271 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence 99987421 0 0111 1579999999999999988764433
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.5e-09 Score=91.45 Aligned_cols=94 Identities=20% Similarity=0.223 Sum_probs=73.0
Q ss_pred CCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHH
Q 021661 148 PGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 226 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~ 226 (309)
...++||||+|-|...... .-..+|++.+.|+.|....+++ .|.+.|. .+..-.+.+||+|.|.++|+.-.+|..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-g~~vl~~---~~w~~~~~~fDvIscLNvLDRc~~P~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-GFTVLDI---DDWQQTDFKFDVISCLNVLDRCDRPLT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-CCeEEeh---hhhhccCCceEEEeehhhhhccCCHHH
Confidence 4679999999977544333 3356899999999998876553 2233444 333334568999999999999999999
Q ss_pred HHHHHHhhcccCcEEEEEe
Q 021661 227 VFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 227 ~l~~i~rvLkpGG~lii~~ 245 (309)
.|++|++.|+|+|.+++.+
T Consensus 170 LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAV 188 (265)
T ss_pred HHHHHHHHhCCCCEEEEEE
Confidence 9999999999999888874
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-08 Score=83.63 Aligned_cols=118 Identities=8% Similarity=0.072 Sum_probs=76.5
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
.++.+|||||||+|..... +....+|+++|+++.|++.+++ +++++++|+ .++++++.+||.|+++.-.+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~---~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDA---LKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECch---hcCCccccCCCEEEECCCcc
Confidence 3467999999999954322 2225799999999999987654 377899999 77777777799999986544
Q ss_pred ccCCHHHHHHHHHhh--cccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHH
Q 021661 220 YLTKPIEVFKEMCQV--LKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYF 274 (309)
Q Consensus 220 ~l~d~~~~l~~i~rv--LkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f 274 (309)
+ ....+..+... +.++|.++++.. ..+.+..+-....+..+..+.+++
T Consensus 89 -~--~~~~i~~~l~~~~~~~~~~l~~q~e----~a~rl~~~~~~~~y~~lsv~~~~~ 138 (169)
T smart00650 89 -I--STPILFKLLEEPPAFRDAVLMVQKE----VARRLAAKPGSKDYGRLSVLLQPY 138 (169)
T ss_pred -c--HHHHHHHHHhcCCCcceEEEEEEHH----HhHHhcCCCCCCcccHHHHHHHHH
Confidence 2 12344444432 447788888732 122222222334556666666544
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.5e-08 Score=88.43 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=97.2
Q ss_pred CCCCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEE
Q 021661 146 NTPGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
..++.+|||.|.|+|... + ...+.++|+..|+-+++.+.|++| +++..+|+ .+.-.++ .||+|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv---~~~~~~~-~vDav 167 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV---REGIDEE-DVDAV 167 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc---ccccccc-ccCEE
Confidence 467999999999988532 2 245779999999999999999876 56677887 4444444 79999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP 292 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~ 292 (309)
+.- +++|.++++.+..+|||||.+++-.|+-.-..+.. +-+ +..||.++++.-+....
T Consensus 168 ~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~----------------~~l-~~~g~~~ie~~E~l~R~ 225 (256)
T COG2519 168 FLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTV----------------EAL-RERGFVDIEAVETLVRR 225 (256)
T ss_pred EEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH----------------HHH-HhcCccchhhheeeehe
Confidence 874 68999999999999999999888666422211111 112 23477777766664432
Q ss_pred ----------CC---CCCcEEEEEEeCCC
Q 021661 293 ----------GR---SDPMYVVYSRKAST 308 (309)
Q Consensus 293 ----------~~---~~p~~~v~a~k~~~ 308 (309)
.+ .-.-|+|.+||.+.
T Consensus 226 ~~v~~~~~RP~~~~v~HTgyivf~R~~~~ 254 (256)
T COG2519 226 WEVRKEATRPETRMVGHTGYIVFARKLGG 254 (256)
T ss_pred eeecccccCcccccccceeEEEEEeeccC
Confidence 11 12449999999864
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.7e-08 Score=88.45 Aligned_cols=142 Identities=15% Similarity=0.216 Sum_probs=87.0
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEe-----------------------------
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQ----------------------------- 194 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~----------------------------- 194 (309)
..+..+|||||-.|.. +...+....|.|+||.+..++.|++++++...
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccccc
Confidence 3478999999976643 34444455799999999999998875322111
Q ss_pred ---cCCCC-------------CCCCCCCCceeEEEeccchhcc--C----CHHHHHHHHHhhcccCcEEEEEecCcchhH
Q 021661 195 ---DLNLN-------------PKLPFEDNSFDVITNVVSVDYL--T----KPIEVFKEMCQVLKPGGLAIVSFSNRCFWT 252 (309)
Q Consensus 195 ---D~~~~-------------~~lp~~~~sfDlVis~~vl~~l--~----d~~~~l~~i~rvLkpGG~lii~~~~~~~~~ 252 (309)
|.-.. +-+......||+|+|..+--|+ + -...+|+.|++.|.|||+|+++-..+..+.
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~ 216 (288)
T KOG2899|consen 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYK 216 (288)
T ss_pred ccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHH
Confidence 00000 1122344579999997765554 2 257899999999999999999955555555
Q ss_pred HHhhhhhc-CCCCch----hHhHHHHHH-HhCCCCCCceeec
Q 021661 253 KAISIWTS-TGDADH----VMIVGAYFH-YAGGYEPPQAVDI 288 (309)
Q Consensus 253 ~~~~~w~~-~~~~~h----~~~~~~~f~-~~~Gf~~~~~~~~ 288 (309)
+....-.. ...+.. ...++.++. ..-||+..+-..+
T Consensus 217 kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~ 258 (288)
T KOG2899|consen 217 KAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVEDLGL 258 (288)
T ss_pred HHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeeccccc
Confidence 44433211 112222 223344443 3367777665553
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-08 Score=92.83 Aligned_cols=95 Identities=16% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCeEEEECCCcch-------hccCC----CCCCeEEEEeCCHHHHhhCCCC-----------------------------
Q 021661 149 GVSILDLCSSWVS-------HFPPG----YKQDRIVGMGMNEEELKRNPVL----------------------------- 188 (309)
Q Consensus 149 ~~~ILDiGcG~g~-------~~~~~----~~~~~v~giD~S~~~l~~a~~~----------------------------- 188 (309)
..+|+..||++|. .+... ....+|+|+|+|+.+|+.|++-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4799999999882 11111 1135899999999999876541
Q ss_pred ----------CcEEEecCCCCCCCCCC-CCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEec
Q 021661 189 ----------TEYVVQDLNLNPKLPFE-DNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 ----------i~~~~~D~~~~~~lp~~-~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+.|.+.|+ ...+++ .+.||+|+|-+++.|+.+ ..++++++++.|+|||+|++.-.
T Consensus 196 ~~v~~~lr~~V~F~~~NL---~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 196 VRVRQELANYVDFQQLNL---LAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEChHHHccCEEEcccC---CCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 56677777 343332 578999999999999954 57899999999999999988643
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-08 Score=91.67 Aligned_cols=168 Identities=15% Similarity=0.191 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchh-ccCCCC-CCeEEEEeCCHHHHhhCCC-----C--------------
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYK-QDRIVGMGMNEEELKRNPV-----L-------------- 188 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~-~~~~~~-~~~v~giD~S~~~l~~a~~-----~-------------- 188 (309)
......+.+.+.+.....++.++||||||.... +..+.+ ..+|+..|.++.-++..++ .
T Consensus 38 ~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~l 117 (256)
T PF01234_consen 38 ILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCEL 117 (256)
T ss_dssp HHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhc
Confidence 344344445555554445678999999996543 333333 3489999999876652111 0
Q ss_pred ------------------CcEEEecCCCCCCCCC---CCCceeEEEeccchhccC-C---HHHHHHHHHhhcccCcEEEE
Q 021661 189 ------------------TEYVVQDLNLNPKLPF---EDNSFDVITNVVSVDYLT-K---PIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 189 ------------------i~~~~~D~~~~~~lp~---~~~sfDlVis~~vl~~l~-d---~~~~l~~i~rvLkpGG~lii 243 (309)
-..+..|+.....++. -+..||+|++.++|+... | ...+++++.++|||||.|++
T Consensus 118 Eg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil 197 (256)
T PF01234_consen 118 EGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLIL 197 (256)
T ss_dssp TTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 2467888842222221 123599999999999873 4 46899999999999998776
Q ss_pred Ee-cCcchhHHHhhhhhcCCCCch----hHhHHHHHHHhCCCCCCceeeccCCCCCCCCcEEEEEEe
Q 021661 244 SF-SNRCFWTKAISIWTSTGDADH----VMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 244 ~~-~~~~~~~~~~~~w~~~~~~~h----~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k 305 (309)
.. .+...+. ........ ...+.+-+ +.+||...+... ....-+.+.++.++|||
T Consensus 198 ~~~l~~t~Y~------vG~~~F~~l~l~ee~v~~al-~~aG~~i~~~~~-~~~~~d~~~~~f~~a~K 256 (256)
T PF01234_consen 198 AGVLGSTYYM------VGGHKFPCLPLNEEFVREAL-EEAGFDIEDLEK-QSKVSDYEGMFFLVARK 256 (256)
T ss_dssp EEESS-SEEE------ETTEEEE---B-HHHHHHHH-HHTTEEEEEEEG--TTTB---EEEEEEEEE
T ss_pred EEEcCceeEE------ECCEecccccCCHHHHHHHH-HHcCCEEEeccc-ccCcCCCCcEEEEEEeC
Confidence 53 3322110 00011111 22334444 568998655552 22222456789999998
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-08 Score=89.57 Aligned_cols=91 Identities=12% Similarity=0.161 Sum_probs=68.1
Q ss_pred CCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC-----CCCCcee
Q 021661 149 GVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP-----FEDNSFD 210 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp-----~~~~sfD 210 (309)
+.+|||||||+|.. +... .+.++|+++|+++++++.|+++ ++++++|+. +.++ .+.++||
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~--~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL--SALDQLLNNDPKPEFD 146 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH--HHHHHHHhCCCCCCCC
Confidence 67999999998842 2333 3467999999999999987764 678899982 2222 1246899
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+|+...-- +.+...+..+.+.|||||.++++
T Consensus 147 ~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDADK---PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECCCH---HHHHHHHHHHHHhcCCCeEEEEE
Confidence 99885321 34568899999999999998886
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-09 Score=90.38 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=63.7
Q ss_pred CCCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|-.. . ...+.++|+++|+.+...+.|+++ +.++++|.. ..++ +...||.|++
T Consensus 71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~--~g~~-~~apfD~I~v 147 (209)
T PF01135_consen 71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGS--EGWP-EEAPFDRIIV 147 (209)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GG--GTTG-GG-SEEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchh--hccc-cCCCcCEEEE
Confidence 56999999999988322 2 223456899999999999988764 789999983 2233 4567999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
......++ ..+.+.||+||.|++-+.
T Consensus 148 ~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 148 TAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp SSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred eeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 98877554 347777999999988655
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-08 Score=100.16 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=71.5
Q ss_pred CCCeEEEECCCcchhcc--CCCCC-CeEEEEeCCHHHHhhCCC---------------CCcEEEecCCCCCC-CCCCCCc
Q 021661 148 PGVSILDLCSSWVSHFP--PGYKQ-DRIVGMGMNEEELKRNPV---------------LTEYVVQDLNLNPK-LPFEDNS 208 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~~-~~v~giD~S~~~l~~a~~---------------~i~~~~~D~~~~~~-lp~~~~s 208 (309)
++.+|||||||.|.... ..++. .+|+++|+++++++.+++ +++++.+|+ .+ +...+++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da---~~~l~~~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDA---FNWLRKLAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChH---HHHHHhCCCC
Confidence 36799999999885432 23444 699999999999998876 256777887 33 3333468
Q ss_pred eeEEEeccchhccCC-----HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 209 FDVITNVVSVDYLTK-----PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 209 fDlVis~~vl~~l~d-----~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
||+|++...-...+. .+++++.+.+.|||||.+++...++
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~ 418 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSP 418 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCc
Confidence 999999854333222 2468999999999999999876543
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-08 Score=91.55 Aligned_cols=98 Identities=12% Similarity=0.104 Sum_probs=67.3
Q ss_pred CCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC------------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~------------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+.+||+||||.|.... ...+..+|+++|+++++++.+++. ++++.+|+. ..+....++||+|+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~--~~l~~~~~~yDvIi 150 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGF--KFLADTENTFDVII 150 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchH--HHHHhCCCCccEEE
Confidence 5699999999885432 222356899999999999877653 445555651 11222246899999
Q ss_pred eccchhccC--C--HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 214 NVVSVDYLT--K--PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 214 s~~vl~~l~--d--~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+......-+ + ..++++.+.++|+|||.+++...++
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~ 189 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSESP 189 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence 865422111 2 3688999999999999998875443
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.4e-08 Score=86.07 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=69.4
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHH
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVF 228 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l 228 (309)
...|-|+|||-+..... ....|+..|+-+. +-+++.+|+ .++|+++++.|+++++.+|.- .|...++
T Consensus 181 ~~vIaD~GCGEakiA~~--~~~kV~SfDL~a~-------~~~V~~cDm---~~vPl~d~svDvaV~CLSLMg-tn~~df~ 247 (325)
T KOG3045|consen 181 NIVIADFGCGEAKIASS--ERHKVHSFDLVAV-------NERVIACDM---RNVPLEDESVDVAVFCLSLMG-TNLADFI 247 (325)
T ss_pred ceEEEecccchhhhhhc--cccceeeeeeecC-------CCceeeccc---cCCcCccCcccEEEeeHhhhc-ccHHHHH
Confidence 67999999997755442 2457888887532 467889999 899999999999999887763 5899999
Q ss_pred HHHHhhcccCcEEEEEec
Q 021661 229 KEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 229 ~~i~rvLkpGG~lii~~~ 246 (309)
+|++|+|||||.+.|.-.
T Consensus 248 kEa~RiLk~gG~l~IAEv 265 (325)
T KOG3045|consen 248 KEANRILKPGGLLYIAEV 265 (325)
T ss_pred HHHHHHhccCceEEEEeh
Confidence 999999999999877633
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.4e-08 Score=85.53 Aligned_cols=98 Identities=16% Similarity=0.281 Sum_probs=70.6
Q ss_pred CCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEE----EecCCCCCCCCCCCCceeEE
Q 021661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYV----VQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~----~~D~~~~~~lp~~~~sfDlV 212 (309)
+..|||+|||+|. .+....+.+.|+++|.|+.++..|.+| +..+ +.|.. ...+..++++|++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~--~~~~l~~~~~dll 226 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDAS--DEHPLLEGKIDLL 226 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccc--cccccccCceeEE
Confidence 5689999999984 345556789999999999999988876 3333 44443 2334567899999
Q ss_pred Eeccc-hhc-------------------------cCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 213 TNVVS-VDY-------------------------LTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 213 is~~v-l~~-------------------------l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+|+-- +.+ ......++.-+.|.|+|||.+.+++...
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~ 288 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER 288 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence 99831 111 1112467778899999999999998743
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.2e-08 Score=91.61 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=66.2
Q ss_pred eEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEecc---
Q 021661 151 SILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVV--- 216 (309)
Q Consensus 151 ~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~--- 216 (309)
+|||+|||+|. .+....+..+|+|+|+|+.+++.|++| +.+++.|+. +.++ ++||+|++|-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf--~~~~---~~fDlIVsNPPYi 187 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLF--EPLR---GKFDLIVSNPPYI 187 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecc--cccC---CceeEEEeCCCCC
Confidence 79999999984 345556778999999999999988775 245555652 3332 3899999872
Q ss_pred --chhcc------CC--------------HHHHHHHHHhhcccCcEEEEEec
Q 021661 217 --SVDYL------TK--------------PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 --vl~~l------~d--------------~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
-..+. .+ ...++.++.+.|+|||.++++..
T Consensus 188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 10111 11 25788999999999999999855
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.9e-08 Score=86.04 Aligned_cols=91 Identities=19% Similarity=0.231 Sum_probs=69.8
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|-.. ..+.-..+|+.+|..+...+.|+++ +.+.++|.. ..+| +...||.|+...+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~--~G~~-~~aPyD~I~Vtaa 147 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGS--KGWP-EEAPYDRIIVTAA 147 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcc--cCCC-CCCCcCEEEEeec
Confidence 66899999999998432 1122234999999999998888763 788999983 3333 3478999999998
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
...+++ .+.+.|||||.+++-..
T Consensus 148 a~~vP~------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 148 APEVPE------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred cCCCCH------HHHHhcccCCEEEEEEc
Confidence 887765 47778999999888655
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-08 Score=102.61 Aligned_cols=96 Identities=19% Similarity=0.172 Sum_probs=69.0
Q ss_pred CCeEEEECCCcchhccCC-CCC-CeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 149 GVSILDLCSSWVSHFPPG-YKQ-DRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~-~~~-~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
+.+|||+|||+|.....+ ..+ .+|+++|+|+.+++.+++| ++++++|+. +.+.-..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~--~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL--AWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH--HHHHHcCCCcCEEEECC
Confidence 789999999998543222 223 4799999999999987764 578889872 11211146899999852
Q ss_pred -----------chhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 217 -----------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 -----------vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+.....+...++..+.++|+|||.++++..
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 122234567889999999999999988754
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.6e-08 Score=87.85 Aligned_cols=92 Identities=25% Similarity=0.310 Sum_probs=79.8
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCCC-C-cEEEecCCCCCCCCCCCCceeEEEeccchhccCC---
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVL-T-EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK--- 223 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~~-i-~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d--- 223 (309)
+..+||+|||.|..+... |...++|+|++...+..+++. . ....+|+ .++|+.+.+||.+++..++||+..
T Consensus 46 gsv~~d~gCGngky~~~~-p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~---l~~p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGVN-PLCLIIGCDLCTGLLGGAKRSGGDNVCRADA---LKLPFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred cceeeecccCCcccCcCC-CcceeeecchhhhhccccccCCCceeehhhh---hcCCCCCCccccchhhhhhhhhhhHHH
Confidence 789999999998765443 778899999999999998876 4 5889999 899999999999999999999963
Q ss_pred HHHHHHHHHhhcccCcEEEEE
Q 021661 224 PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG~lii~ 244 (309)
-..+++++.|+|||||...+.
T Consensus 122 R~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHhcCCCceEEE
Confidence 468999999999999965544
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-07 Score=80.17 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=99.0
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhh-------CC-CC-CcEEEecCCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKR-------NP-VL-TEYVVQDLNLNP 200 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~-------a~-~~-i~~~~~D~~~~~ 200 (309)
-+.+.+.++++. .+.+|||||||+|. ++....|.....-.|+.+..+.. +. .+ ..-+..|+.. .
T Consensus 13 pIl~vL~~~l~~---~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~-~ 88 (204)
T PF06080_consen 13 PILEVLKQYLPD---SGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA-P 88 (204)
T ss_pred HHHHHHHHHhCc---cCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC-C
Confidence 345666677764 12369999999995 45667788888899998877421 11 12 3345666632 1
Q ss_pred CCCC------CCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEecC------cchhHHHhhhhhcC----C
Q 021661 201 KLPF------EDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN------RCFWTKAISIWTST----G 262 (309)
Q Consensus 201 ~lp~------~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~------~~~~~~~~~~w~~~----~ 262 (309)
..+. ..++||.|+|.+++|-.+ .-+.+|+.+.++|+|||.|++--|- ...-...++.|.+. +
T Consensus 89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~ 168 (204)
T PF06080_consen 89 PWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEW 168 (204)
T ss_pred CCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCc
Confidence 1222 356899999999998765 3478999999999999998885331 11223444555433 2
Q ss_pred CCchhHhHHHHHHHhCCCCCCceeeccCCC
Q 021661 263 DADHVMIVGAYFHYAGGYEPPQAVDISPNP 292 (309)
Q Consensus 263 ~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~ 292 (309)
....+.-+.. +..+.|++..+.+.-..+.
T Consensus 169 GiRD~e~v~~-lA~~~GL~l~~~~~MPANN 197 (204)
T PF06080_consen 169 GIRDIEDVEA-LAAAHGLELEEDIDMPANN 197 (204)
T ss_pred CccCHHHHHH-HHHHCCCccCcccccCCCC
Confidence 2333333333 3366899988888776654
|
The function of this family is unknown. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.6e-08 Score=86.55 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=64.9
Q ss_pred CCeEEEECCCcchhccC------CCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 149 GVSILDLCSSWVSHFPP------GYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~------~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
+.+|||+|||+|..... ..+..+|+++|+++.+++.|+++ ++++.+|+ ...++ +++||+||++-=+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~---~~~~~-~~~FDlIIsNPPY~ 125 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADA---LTTEF-DTLFDMAISNPPFG 125 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcch---hcccc-cCCccEEEECCCCC
Confidence 67999999999854431 12356999999999999999876 68999998 55444 46899999984222
Q ss_pred cc--C----------CHHHHHHHHHhhcccCcE
Q 021661 220 YL--T----------KPIEVFKEMCQVLKPGGL 240 (309)
Q Consensus 220 ~l--~----------d~~~~l~~i~rvLkpGG~ 240 (309)
-+ . -...+++.+.+++++|+.
T Consensus 126 ~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 126 KIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 11 1 135688899997777775
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.6e-08 Score=85.69 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=69.0
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
+..+|||||+|.|.. +...+|+.+++..|+ |..++.+++ +++++.+|+ . -+++. +|+|+..++||+.+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd~---f-~~~P~--~D~~~l~~vLh~~~ 172 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGDF---F-DPLPV--ADVYLLRHVLHDWS 172 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-T---T-TCCSS--ESEEEEESSGGGS-
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-HhhhhccccccccccccccH---H-hhhcc--ccceeeehhhhhcc
Confidence 456999999998843 456789999999999 777775543 599999999 3 34444 99999999999997
Q ss_pred CH--HHHHHHHHhhcccC--cEEEEE
Q 021661 223 KP--IEVFKEMCQVLKPG--GLAIVS 244 (309)
Q Consensus 223 d~--~~~l~~i~rvLkpG--G~lii~ 244 (309)
+. .++|+++++.|+|| |.|+|.
T Consensus 173 d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 173 DEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred hHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 64 58999999999999 966543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.9e-08 Score=87.41 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=73.4
Q ss_pred CCeEEEECCCcch-------hccCCC-----CCCeEEEEeCCHHHHhhCCCC----------------------------
Q 021661 149 GVSILDLCSSWVS-------HFPPGY-----KQDRIVGMGMNEEELKRNPVL---------------------------- 188 (309)
Q Consensus 149 ~~~ILDiGcG~g~-------~~~~~~-----~~~~v~giD~S~~~l~~a~~~---------------------------- 188 (309)
..+|.-+||++|. .+.... ...+|+|+|+|..+|+.|++-
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 6799999999882 112222 246999999999999988651
Q ss_pred ---------CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 189 ---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 ---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|.|.+.|+ ..-++..+.||+|+|-+|+-++..+ .++++.++..|+|||+|++.-+
T Consensus 177 ~v~~~ir~~V~F~~~NL---l~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 177 RVKEELRKMVRFRRHNL---LDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEChHHhcccEEeecCC---CCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 67777777 3333234569999999999999754 6899999999999999999644
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.62 E-value=7.4e-08 Score=83.87 Aligned_cols=137 Identities=17% Similarity=0.086 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
...+.||.|+|.|+... +..-..+|..+|+++.+++.|++. .++++.-+ ++...+.++||+|.+..+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gL---Q~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGL---QDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-G---GG----TT-EEEEEEES-
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCH---hhccCCCCcEeEEEehHh
Confidence 35799999999996542 223367999999999999988731 56777777 555445678999999999
Q ss_pred hhccCC--HHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCC---chhHhHHHHHHHhCCCCCCceeeccCCC
Q 021661 218 VDYLTK--PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDA---DHVMIVGAYFHYAGGYEPPQAVDISPNP 292 (309)
Q Consensus 218 l~~l~d--~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~---~h~~~~~~~f~~~~Gf~~~~~~~~~~~~ 292 (309)
+.|++| ..++|+.+...|+|+|.++|--.....- ...+ +..+. .....+.+.|++ +|+..++......-|
T Consensus 132 lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~---~~~~-D~~DsSvTRs~~~~~~lF~~-AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 132 LGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG---FDEF-DEEDSSVTRSDEHFRELFKQ-AGLRLVKEEKQKGFP 206 (218)
T ss_dssp GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS---EEEE-ETTTTEEEEEHHHHHHHHHH-CT-EEEEEEE-TT--
T ss_pred hccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC---Cccc-CCccCeeecCHHHHHHHHHH-cCCEEEEeccccCCC
Confidence 999975 5799999999999999998863321100 0011 11111 113455666754 888866554433334
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.6e-08 Score=95.75 Aligned_cols=97 Identities=20% Similarity=0.211 Sum_probs=66.7
Q ss_pred CCCeEEEECCCcchhccCCCCCCeEEEE-----eCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchh-c
Q 021661 148 PGVSILDLCSSWVSHFPPGYKQDRIVGM-----GMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD-Y 220 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~~~~~~v~gi-----D~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~-~ 220 (309)
.-..+||+|||+|++.....+. .|+.+ |..+.+++.|-++ +..+.+-+.. ..|||++++||+|.|+.++. |
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s-~rLPfp~~~fDmvHcsrc~i~W 194 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALERGVPAMIGVLGS-QRLPFPSNAFDMVHCSRCLIPW 194 (506)
T ss_pred ceEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhhcCcchhhhhhcc-ccccCCccchhhhhcccccccc
Confidence 3468999999998776554322 23333 3334566666544 3333222211 68999999999999987554 4
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+....|-++.|+|+|||+++++-+
T Consensus 195 ~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 195 HPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hhcccceeehhhhhhccCceEEecCC
Confidence 55556799999999999999999855
|
; GO: 0008168 methyltransferase activity |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=8.7e-08 Score=91.79 Aligned_cols=96 Identities=20% Similarity=0.159 Sum_probs=67.2
Q ss_pred CCeEEEECCCcchhccC-CC-CCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCC-C---CCCCceeEE
Q 021661 149 GVSILDLCSSWVSHFPP-GY-KQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL-P---FEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~-~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~l-p---~~~~sfDlV 212 (309)
+.+|||+|||+|..... +. ...+|+++|+|+.+++.++++ ++++++|+ .+. + ...++||+|
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~---~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV---FKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH---HHHHHHHHhcCCCCCEE
Confidence 78999999999864322 22 344899999999999877653 46888888 332 1 134589999
Q ss_pred Eeccch---------hccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 213 TNVVSV---------DYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 213 is~~vl---------~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++.--. ..+.+...++..+.++|||||.++....+
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 987311 11123556677889999999988765443
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=8e-08 Score=90.65 Aligned_cols=96 Identities=35% Similarity=0.533 Sum_probs=81.7
Q ss_pred CCCCCeEEEECCCcch--hccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 146 NTPGVSILDLCSSWVS--HFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~--~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
..++..++|+|||.+. .+........++|+|.++..+.++... ..++.+|+ -+.|++++.||.+-+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~---~~~~fedn~fd~v~~ 184 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF---GKMPFEDNTFDGVRF 184 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh---hcCCCCccccCcEEE
Confidence 4557799999999763 344456678999999999888765542 56788888 889999999999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..+.+|.+++..+++|++|++||||+.+..
T Consensus 185 ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 185 LEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 999999999999999999999999998775
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.6e-07 Score=85.65 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=68.2
Q ss_pred CCCeEEEECCCcchhcc--CCCC-CCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCC-CCCCceeE
Q 021661 148 PGVSILDLCSSWVSHFP--PGYK-QDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLP-FEDNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~-~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp-~~~~sfDl 211 (309)
.+.+||+||||.|.... ..++ ..+|+.+|+++.+++.+++ +++++.+|+. .-+. .++++||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~--~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV--EFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH--HHHhhccCCCCCE
Confidence 36899999999885432 2233 4689999999999987665 3677888862 1111 22567999
Q ss_pred EEeccchhccCC----HHHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~~vl~~l~d----~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|++...-.+.+. -.++++.+.++|+|||.+++...+
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s 208 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAES 208 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCC
Confidence 998643322221 257899999999999999875443
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.9e-08 Score=82.82 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=69.5
Q ss_pred CeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCC--------CCCcEEEecCCCCCC-CC--CCCCceeEEEec
Q 021661 150 VSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPK-LP--FEDNSFDVITNV 215 (309)
Q Consensus 150 ~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~--------~~i~~~~~D~~~~~~-lp--~~~~sfDlVis~ 215 (309)
..+||||||.|.++ +...|...++|+|++...+..+. .|+.++++|+ .. ++ ++++++|.|+.+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da---~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDA---RELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-C---TTHHHHHSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccH---HHHHhhcccCCchheEEEe
Confidence 38999999999654 45578999999999998876543 3589999998 44 32 456899999987
Q ss_pred cchhccCC--------HHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 216 VSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 216 ~vl~~l~d--------~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
+-=-|... -..+++.+.++|+|||.+.+.+.....
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y 138 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEY 138 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHH
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 64333321 158999999999999999887766443
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.9e-08 Score=84.21 Aligned_cols=96 Identities=20% Similarity=0.261 Sum_probs=69.9
Q ss_pred CCCCeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHhhCCC--------------------CCcEEEecCCCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELKRNPV--------------------LTEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~~a~~--------------------~i~~~~~D~~~~~~lp~~ 205 (309)
.++.+||..|||.|. ....+..+.+|+|+|+|+.+++.+.+ +++++++|+ -+++..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf---F~l~~~ 112 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF---FELPPE 112 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T---TTGGGS
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc---ccCChh
Confidence 346799999999883 23333447799999999999987511 157889999 565533
Q ss_pred C-CceeEEEeccchhccC--CHHHHHHHHHhhcccCcE-EEEEe
Q 021661 206 D-NSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGL-AIVSF 245 (309)
Q Consensus 206 ~-~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~-lii~~ 245 (309)
. ++||+|+=...|+.++ ...+..+.+.++|||||. |++++
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l 156 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITL 156 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 3 5799999888888774 457899999999999997 44443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.3e-07 Score=90.46 Aligned_cols=110 Identities=20% Similarity=0.268 Sum_probs=73.5
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCC-C
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLN-P 200 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~-~ 200 (309)
.+.+.+.+.+.+.. .++.+|||+|||+|... ..+....+|+|+|+|+.|++.|+++ ++++++|+... .
T Consensus 282 ~e~l~~~vl~~l~~--~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDP--QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcC--CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 34455555555542 45789999999999543 3333357999999999999987753 78999998310 1
Q ss_pred CCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 201 ~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+++.+++||+|++.---. ...+.++.+.+ ++|++.++++..
T Consensus 360 ~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSCn 401 (443)
T PRK13168 360 DQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSCN 401 (443)
T ss_pred hhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEeC
Confidence 1234456899999864221 12355655555 699999999864
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=80.01 Aligned_cols=97 Identities=10% Similarity=-0.098 Sum_probs=67.3
Q ss_pred CCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 149 GVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
+.+|||+|||+|.... ......+|+++|.++.+++.++++ ++++++|+. ..++...++||+|+++--.
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~--~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNAL--SFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHH--HHHhhcCCCceEEEECCCC
Confidence 6799999999985443 223346999999999998876653 678888872 2233234569999998653
Q ss_pred hccCCHHHHHHHHHh--hcccCcEEEEEecCc
Q 021661 219 DYLTKPIEVFKEMCQ--VLKPGGLAIVSFSNR 248 (309)
Q Consensus 219 ~~l~d~~~~l~~i~r--vLkpGG~lii~~~~~ 248 (309)
.. .-..++++.+.. +|+|+|+++++....
T Consensus 132 ~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 132 RK-GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CC-ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 21 123455565554 489999999997653
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.1e-07 Score=94.69 Aligned_cols=97 Identities=16% Similarity=0.199 Sum_probs=68.5
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC------------------------CCcEEEecCCCCCC
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV------------------------LTEYVVQDLNLNPK 201 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~------------------------~i~~~~~D~~~~~~ 201 (309)
+.+|||+|||+|.. +....+..+|+|+|+|+++++.|++ +++++++|+. ..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~--~~ 196 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLL--GY 196 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchh--hh
Confidence 56999999998843 3344566799999999999987632 3678889982 22
Q ss_pred CCCCCCceeEEEecc--------------chhc--------------c------CC----HHHHHHHHHhhcccCcEEEE
Q 021661 202 LPFEDNSFDVITNVV--------------SVDY--------------L------TK----PIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 202 lp~~~~sfDlVis~~--------------vl~~--------------l------~d----~~~~l~~i~rvLkpGG~lii 243 (309)
++-....||+|+++- +.+| + .| +.+++.++.++|||||.+++
T Consensus 197 ~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l 276 (1082)
T PLN02672 197 CRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF 276 (1082)
T ss_pred ccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 211123699999871 1111 0 11 26788999999999999999
Q ss_pred EecC
Q 021661 244 SFSN 247 (309)
Q Consensus 244 ~~~~ 247 (309)
++..
T Consensus 277 EiG~ 280 (1082)
T PLN02672 277 NMGG 280 (1082)
T ss_pred EECc
Confidence 9764
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.2e-07 Score=76.88 Aligned_cols=91 Identities=20% Similarity=0.368 Sum_probs=70.2
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCC---CCCceeEEEeccchhccCCHH
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPF---EDNSFDVITNVVSVDYLTKPI 225 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~---~~~sfDlVis~~vl~~l~d~~ 225 (309)
..++|||||=.........+.-.|+.||+++. .-...+.|. .+.|+ +++.||+|.++.||.+++++.
T Consensus 52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~-------~~~I~qqDF---m~rplp~~~~e~FdvIs~SLVLNfVP~p~ 121 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQ-------HPGILQQDF---MERPLPKNESEKFDVISLSLVLNFVPDPK 121 (219)
T ss_pred cceEEeecccCCCCcccccCceeeEEeecCCC-------CCCceeecc---ccCCCCCCcccceeEEEEEEEEeeCCCHH
Confidence 47999999964433333344457999999873 245667787 55554 467899999999999999885
Q ss_pred ---HHHHHHHhhcccCcE-----EEEEecCcc
Q 021661 226 ---EVFKEMCQVLKPGGL-----AIVSFSNRC 249 (309)
Q Consensus 226 ---~~l~~i~rvLkpGG~-----lii~~~~~~ 249 (309)
++++.+++.|+|+|. |+|-+|.++
T Consensus 122 ~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C 153 (219)
T PF11968_consen 122 QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC 153 (219)
T ss_pred HHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence 799999999999999 888887654
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-06 Score=79.48 Aligned_cols=99 Identities=15% Similarity=0.128 Sum_probs=77.1
Q ss_pred CCCCeEEEECCCcchhccC---CCCC--CeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEE
Q 021661 147 TPGVSILDLCSSWVSHFPP---GYKQ--DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~---~~~~--~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
..+.+||||+||.|..+.. ..+. .+|.-.|.|+..++.+++. ++|.++|+....++.--+-..|++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 3468999999999976532 2333 5899999999998876542 599999996544443333457999
Q ss_pred EeccchhccCCH---HHHHHHHHhhcccCcEEEEEe
Q 021661 213 TNVVSVDYLTKP---IEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 213 is~~vl~~l~d~---~~~l~~i~rvLkpGG~lii~~ 245 (309)
+.+.+++.++|- ...|+.+.+++.|||.+|.+-
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 999999999873 568999999999999999874
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.2e-07 Score=80.57 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=69.7
Q ss_pred CCCeEEEECCCcch---hccCCCC-CCeEEEEeCCHHHHhhCCCC---------CcEEE-ecCCCCCCCC-CCCCceeEE
Q 021661 148 PGVSILDLCSSWVS---HFPPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVV-QDLNLNPKLP-FEDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g~---~~~~~~~-~~~v~giD~S~~~l~~a~~~---------i~~~~-~D~~~~~~lp-~~~~sfDlV 212 (309)
.+.+|||||.+.|. .++...+ .++++.+|+++++.+.|+++ ++.+. +|+- +.+. ...++||+|
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal--~~l~~~~~~~fDli 136 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL--DVLSRLLDGSFDLV 136 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH--HHHHhccCCCccEE
Confidence 37899999998773 3444445 77999999999999999875 55666 4651 2222 346899999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+.-..= .+..++++.+.++|+|||++++.
T Consensus 137 FIDadK---~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 137 FIDADK---ADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred EEeCCh---hhCHHHHHHHHHHhCCCcEEEEe
Confidence 975421 25679999999999999999987
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.4e-07 Score=78.76 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=87.2
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCC-eEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCC--CCCCCceeEE
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQD-RIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL--PFEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~-~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~l--p~~~~sfDlV 212 (309)
+++.+|||.|.|.|-+. .....++ +|+.++-+++.|+.|+-| ++.+.+|+ .+. .++|++||+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~---~e~V~~~~D~sfDaI 209 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA---YEVVKDFDDESFDAI 209 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH---HHHHhcCCccccceE
Confidence 56899999999988543 3344566 999999999999988765 68899998 443 3778999999
Q ss_pred Eecc-chhccC--CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceee
Q 021661 213 TNVV-SVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVD 287 (309)
Q Consensus 213 is~~-vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~ 287 (309)
+--- -+.+-. --+++-+|++|+|||||.++--+.++.. .+. ..+-..-+.+.+ +..||..++.+.
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~------ryr---G~d~~~gVa~RL-r~vGF~~v~~~~ 277 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGK------RYR---GLDLPKGVAERL-RRVGFEVVKKVR 277 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCc------ccc---cCChhHHHHHHH-HhcCceeeeeeh
Confidence 8431 111111 2368999999999999988776666542 111 112223344445 558998655443
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=69.72 Aligned_cols=93 Identities=30% Similarity=0.473 Sum_probs=69.5
Q ss_pred EEEECCCcch--hccCCCCC-CeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC--CCCCC-CceeEEEeccc
Q 021661 152 ILDLCSSWVS--HFPPGYKQ-DRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK--LPFED-NSFDVITNVVS 217 (309)
Q Consensus 152 ILDiGcG~g~--~~~~~~~~-~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~--lp~~~-~sfDlVis~~v 217 (309)
+||+|||.|. .+...... ..++|+|+++.++..++.. +.+...|. .. +++.. ..||++.+...
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADA---LGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecc---ccCCCCCCCCCceeEEeeeee
Confidence 9999999996 33333333 4899999999999874433 36788887 44 67776 48999944444
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+++.. +...+.++.++|+|+|.+++.....
T Consensus 129 ~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 129 LHLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hhcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44444 8999999999999999988876653
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.1e-07 Score=84.15 Aligned_cols=109 Identities=11% Similarity=0.030 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK 201 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~ 201 (309)
...+.+.+.+.+.. .++.+|||+|||+|... ..+.++.+|+|+|+|+.|++.|+++ ++++++|+ ..
T Consensus 158 ~~~l~~~v~~~l~~--~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~---~~ 232 (315)
T PRK03522 158 AAQLYATARDWVRE--LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDS---TQ 232 (315)
T ss_pred HHHHHHHHHHHHHh--cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCH---HH
Confidence 34444444444432 23679999999998543 3334567999999999999987653 78999998 54
Q ss_pred CCC-CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 202 LPF-EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 202 lp~-~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+.. ..++||+|++.---. ...+.+.++...++|++.++++...
T Consensus 233 ~~~~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc~p 276 (315)
T PRK03522 233 FATAQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSCNA 276 (315)
T ss_pred HHHhcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEECCc
Confidence 432 235799999873311 1112233333446787777777443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-07 Score=78.25 Aligned_cols=99 Identities=21% Similarity=0.187 Sum_probs=62.1
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC-----------CCcEEEecCCCCCCC--C-CCCCce
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKL--P-FEDNSF 209 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~-----------~i~~~~~D~~~~~~l--p-~~~~sf 209 (309)
.++.+|||||||+|.. +.......+|+..|.++ .++..+. ++.+...|+.. .. + .+.++|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~--~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGD--ELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS---HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecC--cccccccccccC
Confidence 4578999999998832 22223577999999998 6553322 26677777731 12 1 245689
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|+|+++.++..-...+.+++-+.++|+|+|.+++....+
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999999988788999999999999999887776644
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.8e-07 Score=81.84 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=68.5
Q ss_pred CCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC-C----CCCcee
Q 021661 149 GVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP-F----EDNSFD 210 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp-~----~~~sfD 210 (309)
+.+|||||+++|.. +... .+.++|+++|.++++.+.|+++ ++++.+|+. +.|+ + ..++||
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~--e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA--ESLKSMIQNGEGSSYD 196 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH--HHHHHHHhcccCCCCC
Confidence 67999999998832 2333 3467899999999999888763 788889883 2232 1 136899
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+|+.-.-= .+....++.+.+.|+|||.+++.
T Consensus 197 ~VFIDa~K---~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 197 FAFVDADK---RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EEEECCCH---HHHHHHHHHHHHhcCCCcEEEEe
Confidence 99986431 35678899999999999999886
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.40 E-value=8e-07 Score=77.67 Aligned_cols=102 Identities=18% Similarity=0.236 Sum_probs=72.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcch---hccCC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLN 199 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~---~~~~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~ 199 (309)
++...+.+... ..+||||||++|. .+..+ .+.++|+.+|++++..+.|++ +++++.+|+.
T Consensus 35 ~lL~~l~~~~~-----~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~-- 107 (205)
T PF01596_consen 35 QLLQMLVRLTR-----PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL-- 107 (205)
T ss_dssp HHHHHHHHHHT------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH--
T ss_pred HHHHHHHHhcC-----CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH--
Confidence 44445555444 6799999999883 23333 347899999999999988765 3789999982
Q ss_pred CCCC-----CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 200 PKLP-----FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 200 ~~lp-----~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+-++ .+.++||+|+.-.-= .+....++.+.+.|+|||.+++.
T Consensus 108 ~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 108 EVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEc
Confidence 1122 113579999986532 35678889999999999999987
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.7e-06 Score=83.16 Aligned_cols=158 Identities=18% Similarity=0.108 Sum_probs=91.3
Q ss_pred CCCCeEEEECCCcch---hcc-CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC-CCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVS---HFP-PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~~-~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp-~~~~sfDlVi 213 (309)
.++.+|||+|+|.|. .+. .....+.|++.|+++.-++..+++ +.....|. ..+. ...+.||.|+
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~---~~~~~~~~~~fD~IL 188 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDG---RVFGAALPETFDAIL 188 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCch---hhhhhhchhhcCeEE
Confidence 568999999998662 222 233457999999999877765543 45666776 4442 2245799999
Q ss_pred ----ecc--chhccCC----------------HHHHHHHHHhhcccCcEEEEEecCc--chhHHHhhhhhcCC-CCchhH
Q 021661 214 ----NVV--SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSNR--CFWTKAISIWTSTG-DADHVM 268 (309)
Q Consensus 214 ----s~~--vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~~--~~~~~~~~~w~~~~-~~~h~~ 268 (309)
|+. ++..-++ ..++|.++.+.|||||.|+.++..- .-.+..+....... +...+.
T Consensus 189 vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~ 268 (470)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFE 268 (470)
T ss_pred EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEec
Confidence 442 3333221 1578999999999999999988752 22223332222111 101111
Q ss_pred hHHHHHH-HhCCCCCCceeeccCCCCCCCCcEEEEEEeCC
Q 021661 269 IVGAYFH-YAGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 269 ~~~~~f~-~~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
-+...+. ...++.....+.+.|.....|.+|+..-+|..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~lrk~~ 308 (470)
T PRK11933 269 PLGDLFPGAEKALTEEGFLHVFPQIYDSEGFFVARLRKTA 308 (470)
T ss_pred cccccccccccccCCCCeEEECCCCCCCcceeeEEEEecC
Confidence 0111010 00112222344555655567889998888874
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-07 Score=81.09 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=72.0
Q ss_pred CCCCeEEEECCCcchhccCCCCC-CeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHH
Q 021661 147 TPGVSILDLCSSWVSHFPPGYKQ-DRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI 225 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~~~~-~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~ 225 (309)
..+.++||+|+|-|.......|. .+|.+.++|..|..+.+.+---+..-+ +-+. .+-+||+|.|.++|+.-.+|-
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~---ew~~-t~~k~dli~clNlLDRc~~p~ 186 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEI---EWLQ-TDVKLDLILCLNLLDRCFDPF 186 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeeh---hhhh-cCceeehHHHHHHHHhhcChH
Confidence 44689999999999776666554 489999999999998776411111111 1111 233699999999999999999
Q ss_pred HHHHHHHhhccc-CcEEEEEe
Q 021661 226 EVFKEMCQVLKP-GGLAIVSF 245 (309)
Q Consensus 226 ~~l~~i~rvLkp-GG~lii~~ 245 (309)
+.|+.|+.+|+| +|.+|++.
T Consensus 187 kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 187 KLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HHHHHHHHHhccCCCcEEEEE
Confidence 999999999999 88777764
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=80.13 Aligned_cols=97 Identities=24% Similarity=0.336 Sum_probs=76.0
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCCCc--------EEEe-cCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVLTE--------YVVQ-DLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~i~--------~~~~-D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.+|..|||==||||..+..+ .-+.+++|+|++.+|++-++.|.+ +... |+ .++|++++++|.|++--
T Consensus 196 ~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da---~~lpl~~~~vdaIatDP 272 (347)
T COG1041 196 KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDA---TNLPLRDNSVDAIATDP 272 (347)
T ss_pred ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEEeccc---ccCCCCCCccceEEecC
Confidence 55889999999999766444 568899999999999999998732 3344 88 89999998999999742
Q ss_pred c------hh--ccCC-HHHHHHHHHhhcccCcEEEEEec
Q 021661 217 S------VD--YLTK-PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 v------l~--~l~d-~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
- .. -+.+ ..++|+.++++||+||.+++..+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 1 11 0112 46899999999999999988766
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-06 Score=84.54 Aligned_cols=109 Identities=17% Similarity=0.168 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCC
Q 021661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLN 199 (309)
Q Consensus 129 ~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~ 199 (309)
.....+.+.+.+.+.. .++.+|||+|||+|.... .+....+|+|+|+|+.|++.|+++ ++++++|+
T Consensus 275 ~~~~~l~~~~~~~l~~--~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~--- 349 (431)
T TIGR00479 275 GQNEKLVDRALEALEL--QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTL--- 349 (431)
T ss_pred HHHHHHHHHHHHHhcc--CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCH---
Confidence 3344445555555432 346799999999995432 223346899999999999987753 78999998
Q ss_pred CC----CCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 200 PK----LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 200 ~~----lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
.. ++..+++||+|+..--=. .-...+++.+.+ |+|++.++++.
T Consensus 350 ~~~l~~~~~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 350 ETVLPKQPWAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred HHHHHHHHhcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcC
Confidence 43 223456799999753211 112566666554 89998887764
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-06 Score=74.00 Aligned_cols=107 Identities=23% Similarity=0.231 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-----cCCCCCCeEEEEeCCHHHHhhCCCC-------------
Q 021661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-----PPGYKQDRIVGMGMNEEELKRNPVL------------- 188 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-----~~~~~~~~v~giD~S~~~l~~a~~~------------- 188 (309)
....+..+.+++..++.+ +.+.||+|.|+|-+. .-..++..++|||.-++.++.++++
T Consensus 65 Ap~mha~~le~L~~~L~p----G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~ 140 (237)
T KOG1661|consen 65 APHMHATALEYLDDHLQP----GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSK 140 (237)
T ss_pred chHHHHHHHHHHHHhhcc----CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhh
Confidence 455666777777776654 899999999988322 2234566679999999999887764
Q ss_pred -----CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 189 -----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 -----i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..++++|. ...-.+...||.|.+... ..+..+++...|||||.++|-..
T Consensus 141 ~~~~~l~ivvGDg---r~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661|consen 141 LKRGELSIVVGDG---RKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred hccCceEEEeCCc---cccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEeec
Confidence 45778887 666667788999999743 34566788889999998887544
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.9e-06 Score=72.21 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=73.2
Q ss_pred CCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhh-CCCCCc---EEEecCCCC--CCCCCCCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKR-NPVLTE---YVVQDLNLN--PKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~-a~~~i~---~~~~D~~~~--~~lp~~~~sfDlVis~~vl 218 (309)
.++.++||+|||+|.+... .....+|+|+|++++|+.. .+++.. +...|+... +.++.+-..+|+++++..+
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~~ 153 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLIS 153 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehHh
Confidence 4578999999999965322 2234589999999988874 443322 344444100 1222122367777765433
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhh---cCCCCchhHhHHHHH--HHhCCCCCCceee
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWT---STGDADHVMIVGAYF--HYAGGYEPPQAVD 287 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~---~~~~~~h~~~~~~~f--~~~~Gf~~~~~~~ 287 (309)
.+..+.+.|+| |.+++-+ .|.|.-..-..-. -.+...|...+.+.. ....||.......
T Consensus 154 --------~l~~i~~~l~~-~~~~~L~-KPqFE~~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T TIGR00478 154 --------ILPELDLLLNP-NDLTLLF-KPQFEAGREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEKKIIF 217 (228)
T ss_pred --------HHHHHHHHhCc-CeEEEEc-ChHhhhcHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEeeEEE
Confidence 48899999999 7655433 3333211101000 113344555555533 2557898665555
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.4e-05 Score=74.08 Aligned_cols=98 Identities=24% Similarity=0.333 Sum_probs=66.1
Q ss_pred CCCCeEEEECCCcc---hhccCCCC--CCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC---CCCCcee
Q 021661 147 TPGVSILDLCSSWV---SHFPPGYK--QDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP---FEDNSFD 210 (309)
Q Consensus 147 ~~~~~ILDiGcG~g---~~~~~~~~--~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp---~~~~sfD 210 (309)
.++.+|||+|++.| .++....+ +..|+++|.++.-++..+++ +..+..|. ..++ ...+.||
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~---~~~~~~~~~~~~fD 231 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA---RRLAELLPGGEKFD 231 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc---ccccccccccCcCc
Confidence 66899999999755 23333332 45679999999766654432 45777776 3332 2223599
Q ss_pred EEEe------ccchhccCC----------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 211 VITN------VVSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 211 lVis------~~vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.|+. ..++..-++ ..++|..+.++|||||.|+.++..
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 9994 234432222 147899999999999999999875
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.2e-06 Score=79.82 Aligned_cols=112 Identities=11% Similarity=0.062 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCC
Q 021661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLN 197 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~ 197 (309)
.....+.+.+.+.+.+.. .++.+|||+|||+|.. +..+.++.+|+|+|+|+.+++.|+++ ++++++|+
T Consensus 214 n~~~~~~l~~~~~~~l~~--~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~- 290 (374)
T TIGR02085 214 NPKVAAQLYATARQWVRE--IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDS- 290 (374)
T ss_pred CHHHHHHHHHHHHHHHHh--cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH-
Confidence 334444555555544421 2357999999999954 33445567999999999999877653 67899998
Q ss_pred CCCCC-CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 198 LNPKL-PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 198 ~~~~l-p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+. +...++||+|+..---.. -..++++.+. .++|++.++++..
T Consensus 291 --~~~~~~~~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc~ 335 (374)
T TIGR02085 291 --AKFATAQMSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSCN 335 (374)
T ss_pred --HHHHHhcCCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEeC
Confidence 432 211245999998743221 1245566665 4799999888854
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4e-06 Score=67.97 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=55.5
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCcee
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFD 210 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfD 210 (309)
+.+++.+.++. .++.+|||||||.|..+ .....+.+|+++|+++..++.++++ +++++.|+.. .++.+ -..+|
T Consensus 4 i~~~l~~~~~~--~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~-p~~~~-y~~a~ 79 (134)
T PRK04148 4 IAEFIAENYEK--GKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFN-PNLEI-YKNAK 79 (134)
T ss_pred HHHHHHHhccc--ccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCC-CCHHH-HhcCC
Confidence 35556665553 34689999999988422 2334477999999999999988776 7899999942 12222 34589
Q ss_pred EEEecc
Q 021661 211 VITNVV 216 (309)
Q Consensus 211 lVis~~ 216 (309)
+|.+.-
T Consensus 80 liysir 85 (134)
T PRK04148 80 LIYSIR 85 (134)
T ss_pred EEEEeC
Confidence 999854
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-06 Score=72.29 Aligned_cols=98 Identities=23% Similarity=0.329 Sum_probs=65.3
Q ss_pred CCCCeEEEECCCcchhccCC---CCCC---------eEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPPG---YKQD---------RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~---~~~~---------~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~ 205 (309)
.++..|||--||+|..+..+ .... +++|.|+++++++.+++| +.+.+.|+ ..+++.
T Consensus 27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~---~~l~~~ 103 (179)
T PF01170_consen 27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA---RELPLP 103 (179)
T ss_dssp -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G---GGGGGT
T ss_pred CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch---hhcccc
Confidence 45789999999999655322 1222 399999999999988765 67899999 888877
Q ss_pred CCceeEEEeccchhc-cC------C-HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 206 DNSFDVITNVVSVDY-LT------K-PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 206 ~~sfDlVis~~vl~~-l~------d-~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++++|+|+++--.-. +. + ..++++++.++|++ ..+++...+.
T Consensus 104 ~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~ 153 (179)
T PF01170_consen 104 DGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNR 153 (179)
T ss_dssp TSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCC
T ss_pred cCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCH
Confidence 889999999732221 11 1 25788999999999 5444444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3e-06 Score=76.01 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=69.4
Q ss_pred CCCCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCC---CCce
Q 021661 146 NTPGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE---DNSF 209 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~---~~sf 209 (309)
..+|.+|||.|.|.|... . ...|.++|+..|+.++..+.|+++ +++...|+ ..-.++ ++.+
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv---~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDV---CEEGFDEELESDF 114 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-G---GCG--STT-TTSE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecce---ecccccccccCcc
Confidence 467999999999988532 2 335789999999999999988764 78899998 443332 3579
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhc-ccCcEEEEEecC
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVL-KPGGLAIVSFSN 247 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvL-kpGG~lii~~~~ 247 (309)
|.|+.- +++|-.++..+.++| ||||.+++-.|+
T Consensus 115 DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ 148 (247)
T PF08704_consen 115 DAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPC 148 (247)
T ss_dssp EEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESS
T ss_pred cEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCC
Confidence 998864 689999999999999 899988776665
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-06 Score=71.38 Aligned_cols=56 Identities=29% Similarity=0.357 Sum_probs=47.8
Q ss_pred CCCCCCCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEecCcchhHHHh
Q 021661 200 PKLPFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAI 255 (309)
Q Consensus 200 ~~lp~~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~ 255 (309)
...+|.+++.|+|++.++++|+. .-..++++++|+|||||+|-+++|.-.+....+
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y 96 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLY 96 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHH
Confidence 45678999999999999999996 456899999999999999999999866554444
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.4e-06 Score=75.06 Aligned_cols=102 Identities=14% Similarity=0.137 Sum_probs=71.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLN 199 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~ 199 (309)
++...+.+..+ ..+|||||+++|.. +..+ .+.++|+.+|++++..+.|++ +++++.+|+.
T Consensus 69 ~lL~~l~~~~~-----ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~-- 141 (247)
T PLN02589 69 QFLNMLLKLIN-----AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL-- 141 (247)
T ss_pred HHHHHHHHHhC-----CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH--
Confidence 34444444443 67999999987732 3333 357899999999998887765 3888999883
Q ss_pred CCCCC------CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 200 PKLPF------EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 200 ~~lp~------~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+.|+- ..++||+|+.-.- =......++.+.+.|+|||.+++.
T Consensus 142 e~L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 142 PVLDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 22331 1368999998643 123567888889999999998886
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.7e-06 Score=76.04 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=67.0
Q ss_pred CCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC------------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~------------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+.+||.||+|.|.... ...+..+|+.+|+++++++.+++. ++++.+|+. .-+....++||+|+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~--~~L~~~~~~yDvIi 181 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR--AELEKRDEKFDVII 181 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH--HHHhhCCCCccEEE
Confidence 6799999999885432 223456899999999999987752 567777772 22333457899999
Q ss_pred eccchhccC-------CHHHHHH-HHHhhcccCcEEEEEec
Q 021661 214 NVVSVDYLT-------KPIEVFK-EMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 214 s~~vl~~l~-------d~~~~l~-~i~rvLkpGG~lii~~~ 246 (309)
+-. ..... --.++++ .+.+.|+|||.+++...
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 863 12110 1246887 89999999999887643
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.9e-06 Score=77.41 Aligned_cols=68 Identities=9% Similarity=0.091 Sum_probs=49.9
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC-----CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~-----~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|..... +....+|+|+|++++|++.+++ +++++++|+ ..+++++-.+|.|+++.-
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~vv~NlP 114 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDA---LKVDLSELQPLKVVANLP 114 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChh---hcCCHHHcCcceEEEeCC
Confidence 4578999999999954322 2224589999999999998765 478999999 777654322588888743
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.3e-05 Score=69.22 Aligned_cols=110 Identities=10% Similarity=-0.074 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC-CCC-CeEEEEeCCHHHHhhCCCC---------CcEEEecCCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG-YKQ-DRIVGMGMNEEELKRNPVL---------TEYVVQDLNL 198 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~~-~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~ 198 (309)
....+...+...+. +.++||++||+|.....+ ..+ .+|+++|.++.+++.++++ ++++++|+.
T Consensus 36 vrea~f~~l~~~~~-----g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~- 109 (189)
T TIGR00095 36 VRELFFNILRPEIQ-----GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL- 109 (189)
T ss_pred HHHHHHHHHHHhcC-----CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH-
Confidence 34444554444333 789999999999654332 223 4899999999998876553 567888872
Q ss_pred CCCCC-C-CC-CceeEEEeccchhccCCHHHHHHHHH--hhcccCcEEEEEecC
Q 021661 199 NPKLP-F-ED-NSFDVITNVVSVDYLTKPIEVFKEMC--QVLKPGGLAIVSFSN 247 (309)
Q Consensus 199 ~~~lp-~-~~-~sfDlVis~~vl~~l~d~~~~l~~i~--rvLkpGG~lii~~~~ 247 (309)
..++ + .. ..||+|+..--... ....+.++.+. .+|+++|.++++...
T Consensus 110 -~~l~~~~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 110 -RALKFLAKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred -HHHHHhhccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 1122 1 12 24788887543322 23345555543 479999999998765
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.4e-06 Score=75.09 Aligned_cols=68 Identities=10% Similarity=0.126 Sum_probs=51.2
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
.++.+|||||||+|..... .....+|+|+|+++.|++.+++ +++++++|+ ..++++ .||.|+++.-.+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~---~~~~~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDA---LKVDLP--EFNKVVSNLPYQ 102 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEecc---ccCCch--hceEEEEcCCcc
Confidence 4578999999999954322 2225689999999999987654 378899999 676654 489999986543
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.2e-06 Score=74.16 Aligned_cols=99 Identities=16% Similarity=0.229 Sum_probs=73.9
Q ss_pred CeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCC-------C-CCcEEEecCCCCCCC-C--CCCCceeEEEec
Q 021661 150 VSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNP-------V-LTEYVVQDLNLNPKL-P--FEDNSFDVITNV 215 (309)
Q Consensus 150 ~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~-------~-~i~~~~~D~~~~~~l-p--~~~~sfDlVis~ 215 (309)
..+||||||.|.++ +...|...++|||+....+..+- - |+.+++.|+ ..+ + +++++.|-|..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA---~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA---VEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCH---HHHHHhcCCCCCeeEEEEE
Confidence 48999999999654 55678899999999987665432 2 578889998 332 2 355699999988
Q ss_pred cchhccCC--------HHHHHHHHHhhcccCcEEEEEecCcchh
Q 021661 216 VSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRCFW 251 (309)
Q Consensus 216 ~vl~~l~d--------~~~~l~~i~rvLkpGG~lii~~~~~~~~ 251 (309)
+-=-|... ...+++.+.++|||||.+.+.+.+....
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~ 170 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYF 170 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHH
Confidence 64433321 1589999999999999999987765443
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.9e-06 Score=80.74 Aligned_cols=99 Identities=17% Similarity=0.190 Sum_probs=73.0
Q ss_pred CCeEEEECCCcchhc-cCCCCCC-eEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCC---CCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQD-RIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLP---FEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~-~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp---~~~~sfDlVi 213 (309)
+.+|||+-|=||.+. ..+..++ +||+||+|...|+.|++| +.|+++|+. .-+. -...+||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf--~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF--KWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH--HHHHHHHhcCCcccEEE
Confidence 889999999666443 3334455 999999999999998875 579999983 2222 2345899999
Q ss_pred ec---------cchhccCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 214 NV---------VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 214 s~---------~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
.- ....-..+....+..+.++|+|||.++++.+...
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 63 1222234677899999999999999988876543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.2e-06 Score=71.22 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=56.9
Q ss_pred CCCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
-.+.+|+|+|||+|.+. .......+|+|+|+.+++++.+++| ++|+++|+ .... ..+|.|+++--
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv---~~~~---~~~dtvimNPP 117 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADV---SDFR---GKFDTVIMNPP 117 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcch---hhcC---CccceEEECCC
Confidence 44779999999999543 2334456999999999999998875 78999999 5553 56889998732
Q ss_pred hhc-c-CCHHHHHHHHHhh
Q 021661 218 VDY-L-TKPIEVFKEMCQV 234 (309)
Q Consensus 218 l~~-l-~d~~~~l~~i~rv 234 (309)
+-- . .-...++..+.++
T Consensus 118 FG~~~rhaDr~Fl~~Ale~ 136 (198)
T COG2263 118 FGSQRRHADRPFLLKALEI 136 (198)
T ss_pred CccccccCCHHHHHHHHHh
Confidence 221 1 1223455555544
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.8e-06 Score=78.53 Aligned_cols=94 Identities=12% Similarity=0.045 Sum_probs=64.4
Q ss_pred CCCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCC----C-----CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPV----L-----TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~----~-----i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
-++..|||||||+|... .......+|+|+|.|.-+ +.|.+ | ++++++.+ +++.+|.++.|+|++-
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkv---Edi~LP~eKVDiIvSE 134 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKV---EDIELPVEKVDIIVSE 134 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecce---EEEecCccceeEEeeh
Confidence 45889999999999543 222234599999998654 44433 2 78999999 7666667889999986
Q ss_pred cchhcc---CCHHHHHHHHHhhcccCcEEEEE
Q 021661 216 VSVDYL---TKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 216 ~vl~~l---~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+=..+ .-...+|-.=-+.|+|||.++=+
T Consensus 135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~ 166 (346)
T KOG1499|consen 135 WMGYFLLYESMLDSVLYARDKWLKEGGLIYPD 166 (346)
T ss_pred hhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence 533332 12344555556889999987543
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1e-05 Score=65.89 Aligned_cols=70 Identities=16% Similarity=0.160 Sum_probs=55.6
Q ss_pred CCCCeEEEECCCcchhc-cCC-CCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF-PPG-YKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~-~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
-.+.+++|+|||.|... ... .....|+|+|+.+++|+.+.+| +++.++|+ ..+.+..+.||.++.+--
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdi---ldle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDI---LDLELKGGIFDTAVINPP 123 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeec---cchhccCCeEeeEEecCC
Confidence 45889999999988543 333 3456899999999999998876 78999999 677667789999998754
Q ss_pred hh
Q 021661 218 VD 219 (309)
Q Consensus 218 l~ 219 (309)
+.
T Consensus 124 FG 125 (185)
T KOG3420|consen 124 FG 125 (185)
T ss_pred CC
Confidence 43
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.9e-05 Score=70.23 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=77.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchh-------ccCCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEe
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQ 194 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~-------~~~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~ 194 (309)
+....-+...++ ++..|+|+|||.+.. +........++++|+|.++|+.+.++ +.-+++
T Consensus 64 ~~~~~~Ia~~i~----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~g 139 (319)
T TIGR03439 64 KKHSSDIAASIP----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLG 139 (319)
T ss_pred HHHHHHHHHhcC----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEe
Confidence 333344444444 367999999997742 22223356899999999999865442 333677
Q ss_pred cCCCCCC-CCC--CCCceeEEEec-cchhccCCH--HHHHHHHHh-hcccCcEEEEEecCcchhHHHhhhhh
Q 021661 195 DLNLNPK-LPF--EDNSFDVITNV-VSVDYLTKP--IEVFKEMCQ-VLKPGGLAIVSFSNRCFWTKAISIWT 259 (309)
Q Consensus 195 D~~~~~~-lp~--~~~sfDlVis~-~vl~~l~d~--~~~l~~i~r-vLkpGG~lii~~~~~~~~~~~~~~w~ 259 (309)
|...... ++- ..+...+|+.. .+|.+++.. ..+|+++++ .|+|||.|+|.+-...........|.
T Consensus 140 dy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~ 211 (319)
T TIGR03439 140 TYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYN 211 (319)
T ss_pred cHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhc
Confidence 7732111 221 12335666655 488888644 479999999 99999999998765444444444443
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.4e-05 Score=63.67 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=73.1
Q ss_pred CCCCeEEEECCCcch----hccCCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCC-----CCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVS----HFPPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLP-----FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~----~~~~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp-----~~~~sfDlVis 214 (309)
.++..|||+|.|+|- .+....+...+++++.|++......+. ++++.+|+ .++. ..+..||.|+|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda---~~l~~~l~e~~gq~~D~viS 123 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDA---FDLRTTLGEHKGQFFDSVIS 123 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccch---hhHHHHHhhcCCCeeeeEEe
Confidence 557899999999983 344555677999999999998876654 77889998 4443 45667999999
Q ss_pred ccchhccC--CHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLT--KPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~--d~~~~l~~i~rvLkpGG~lii 243 (309)
..-+-.++ .-.+.|+++...|.+||.++-
T Consensus 124 ~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 124 GLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 88666664 345899999999999996653
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.6e-05 Score=78.82 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=73.2
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC--CCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp--~~~~sfDlVi 213 (309)
.....+||||||.|.++ +...|...++|+|++..-+..+.+ |+.++..|+ ..+. ++++++|.|+
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~---~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNL---DLILNDLPNNSLDGIY 422 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCH---HHHHHhcCcccccEEE
Confidence 34679999999999654 456788999999999875553321 456777776 3332 5678899999
Q ss_pred eccchhccCC--------HHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 214 NVVSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 214 s~~vl~~l~d--------~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
.++-=-|... ...+++.+.++|||||.+.+.+.+..
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~ 466 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIEN 466 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHH
Confidence 8875444321 15899999999999999988766543
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.7e-05 Score=66.93 Aligned_cols=157 Identities=18% Similarity=0.188 Sum_probs=82.0
Q ss_pred CeEEEECCCcc--h----hccCCCCCCeEEEEeCCHHHHhhCCC------C--CcEEEecCCCCCCC---C-----CCCC
Q 021661 150 VSILDLCSSWV--S----HFPPGYKQDRIVGMGMNEEELKRNPV------L--TEYVVQDLNLNPKL---P-----FEDN 207 (309)
Q Consensus 150 ~~ILDiGcG~g--~----~~~~~~~~~~v~giD~S~~~l~~a~~------~--i~~~~~D~~~~~~l---p-----~~~~ 207 (309)
...||||||.- . ......|.++|+-+|..+-.+..++. + ..++++|+.....+ | +..+
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 69999999922 1 12334689999999999988886654 2 67999999332111 0 1112
Q ss_pred ceeEEEeccchhccC---CHHHHHHHHHhhcccCcEEEEEecCcc----hhHHHhhhhhcCCCCchhHhHHHHHHHhCCC
Q 021661 208 SFDVITNVVSVDYLT---KPIEVFKEMCQVLKPGGLAIVSFSNRC----FWTKAISIWTSTGDADHVMIVGAYFHYAGGY 280 (309)
Q Consensus 208 sfDlVis~~vl~~l~---d~~~~l~~i~rvLkpGG~lii~~~~~~----~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf 280 (309)
.-=.|+...+|||++ ++..++..+...|-||.+|+|+..... ........|......-+.+...+.-.--.||
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~g~ 229 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPERAEALEAVYAQAGSPGRPRSREEIAAFFDGL 229 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHHHHHHHHHHHHHCCS----B-HHHHHHCCTTS
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHHHHHHHHHHHHcCCCCceecCHHHHHHHcCCC
Confidence 223677788999995 578999999999999999999854322 1233334455444444444444432222466
Q ss_pred CCC--ceeecc---CCCCC-------CCCcEEEEEEeC
Q 021661 281 EPP--QAVDIS---PNPGR-------SDPMYVVYSRKA 306 (309)
Q Consensus 281 ~~~--~~~~~~---~~~~~-------~~p~~~v~a~k~ 306 (309)
+.+ .++... |.+.. .-.+|.-+|||+
T Consensus 230 elvePGlv~~~~WrP~~~~~~~~~~~~~~~~~gVarKp 267 (267)
T PF04672_consen 230 ELVEPGLVPVPRWRPDGPEPDPPDPARVWMYGGVARKP 267 (267)
T ss_dssp EE-TT-SEEGGGSS-STTTTTT--GGGGSEEEEEEE--
T ss_pred ccCCCceecccccCCCCCCcCCCCccceEEEEEEEeCC
Confidence 644 333332 22211 135699999996
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4e-05 Score=73.86 Aligned_cols=93 Identities=27% Similarity=0.375 Sum_probs=73.4
Q ss_pred CeEEEECCCcchhccCCCCC--CeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 150 VSILDLCSSWVSHFPPGYKQ--DRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 150 ~~ILDiGcG~g~~~~~~~~~--~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
.++|-+|||........+.+ ..|+.+|+|+-.++.... ...+.+.|+ ..+.+++++||+|+--..+++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~---~~l~fedESFdiVIdkGtlDa 126 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDM---DQLVFEDESFDIVIDKGTLDA 126 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEecc---hhccCCCcceeEEEecCcccc
Confidence 39999999988666555443 489999999987764322 278899999 899999999999999999998
Q ss_pred cCC----------HHHHHHHHHhhcccCcE-EEEEe
Q 021661 221 LTK----------PIEVFKEMCQVLKPGGL-AIVSF 245 (309)
Q Consensus 221 l~d----------~~~~l~~i~rvLkpGG~-lii~~ 245 (309)
+-. ....+.+++|+|+|||+ +.+++
T Consensus 127 l~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 127 LFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred ccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 731 13568899999999995 45555
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.2e-05 Score=78.23 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCeEEEECCCcchhc---cCC----CCCCeEEEEeCCHHHHhhC----C-----CCCcEEEecCCCCCCCCCCCCceeEE
Q 021661 149 GVSILDLCSSWVSHF---PPG----YKQDRIVGMGMNEEELKRN----P-----VLTEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~----~~~~~v~giD~S~~~l~~a----~-----~~i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
+..|||||||+|... ..+ ....+|++++-|+.+.... + .+++++++|+ +++..+. +.|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~---r~v~lpe-kvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM---REVELPE-KVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T---TTSCHSS--EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc---cCCCCCC-ceeEE
Confidence 568999999999543 122 1245999999998765432 1 2489999999 7877654 79999
Q ss_pred Eeccchhcc--CCHHHHHHHHHhhcccCcEEE
Q 021661 213 TNVVSVDYL--TKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 213 is~~vl~~l--~d~~~~l~~i~rvLkpGG~li 242 (309)
||=..=... .-..+.|....|.|||||.++
T Consensus 263 VSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 984321111 123568999999999999764
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.2e-05 Score=67.90 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=47.8
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCcee---EEEecc
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFD---VITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfD---lVis~~ 216 (309)
.++.+|||||||+|...... ....+|+++|+++.|++.+++ +++++.+|+ ..++++ +|| +|+++.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~---~~~~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDA---LKVDLP--DFPKQLKVVSNL 102 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECch---hcCChh--HcCCcceEEEcC
Confidence 45789999999999644222 223579999999999987654 367889998 676654 466 777765
Q ss_pred c
Q 021661 217 S 217 (309)
Q Consensus 217 v 217 (309)
-
T Consensus 103 P 103 (253)
T TIGR00755 103 P 103 (253)
T ss_pred C
Confidence 4
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.2e-05 Score=72.46 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=67.1
Q ss_pred CCeEEEECCCcchhccC---CCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSHFPP---GYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~---~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+|||++||+|..... ..+..+|+++|+++.+++.+++| +++.++|+ ..+....+.||+|+..-
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da---~~~l~~~~~fD~V~lDP- 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDA---NALLHEERKFDVVDIDP- 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhH---HHHHhhcCCCCEEEECC-
Confidence 46899999998854322 22335899999999999987764 44788887 43221145699999864
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
. ..+..++....+.+++||++.++...
T Consensus 134 ~---Gs~~~~l~~al~~~~~~gilyvSAtD 160 (382)
T PRK04338 134 F---GSPAPFLDSAIRSVKRGGLLCVTATD 160 (382)
T ss_pred C---CCcHHHHHHHHHHhcCCCEEEEEecC
Confidence 1 45678888888889999999998443
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.82 E-value=7.5e-06 Score=70.35 Aligned_cols=115 Identities=18% Similarity=0.115 Sum_probs=75.1
Q ss_pred CHHHHHHHHHHHHhh-CCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC---------CcEEEe
Q 021661 127 DDPAIAALTKYYSEV-FPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL---------TEYVVQ 194 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~-l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~---------i~~~~~ 194 (309)
.+...+.+.+++... +. +.++||+-||+|..-..+ +...+|+.+|.++..++..++| +..+..
T Consensus 25 ~drvrealFniL~~~~~~-----g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~ 99 (183)
T PF03602_consen 25 TDRVREALFNILQPRNLE-----GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG 99 (183)
T ss_dssp SHHHHHHHHHHHHCH-HT-----T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred cHHHHHHHHHHhcccccC-----CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence 445566777777766 44 889999999999654332 3345999999999988876654 466777
Q ss_pred cCCCCCCCC---CCCCceeEEEeccchhccCCHHHHHHHHH--hhcccCcEEEEEecCc
Q 021661 195 DLNLNPKLP---FEDNSFDVITNVVSVDYLTKPIEVFKEMC--QVLKPGGLAIVSFSNR 248 (309)
Q Consensus 195 D~~~~~~lp---~~~~sfDlVis~~vl~~l~d~~~~l~~i~--rvLkpGG~lii~~~~~ 248 (309)
|+. ..++ ....+||+|++.--...-....++++.+. .+|+++|+++++....
T Consensus 100 d~~--~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 100 DAF--KFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp SHH--HHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CHH--HHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 752 2222 24678999998643332111367888877 8999999999998764
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0004 Score=60.88 Aligned_cols=160 Identities=17% Similarity=0.161 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhCC-CCCCCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHH----hhCC--CCCcEEEecCCCC
Q 021661 131 IAALTKYYSEVFP-PSNTPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEEL----KRNP--VLTEYVVQDLNLN 199 (309)
Q Consensus 131 ~~~l~~~~~~~l~-~~~~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l----~~a~--~~i~~~~~D~~~~ 199 (309)
+.+++..+..-+. ....++.+||-+|..+|.+. ... .+.+.|.++++|+... ..|+ .|+--+..|+..+
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P 134 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP 134 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCCh
Confidence 3455555544333 22466899999999877543 222 4578999999999653 3444 4566678898422
Q ss_pred CCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH--Hh
Q 021661 200 PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YA 277 (309)
Q Consensus 200 ~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~--~~ 277 (309)
.....--+.+|+|++.-+ +-.+.+-++.++...||+||.++|.+-.+.. ....+ .-..+.+-.+ ++
T Consensus 135 ~~Y~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~si--------D~t~~--p~~vf~~e~~~L~~ 202 (229)
T PF01269_consen 135 EKYRMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISIKARSI--------DSTAD--PEEVFAEEVKKLKE 202 (229)
T ss_dssp GGGTTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH---------SSSS--HHHHHHHHHHHHHC
T ss_pred HHhhcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEEecCcc--------cCcCC--HHHHHHHHHHHHHH
Confidence 222112247999998643 2234456888888999999999887542211 11111 1122222111 55
Q ss_pred CCCCCCceeeccCCCCCCCCcEEEEEEe
Q 021661 278 GGYEPPQAVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 278 ~Gf~~~~~~~~~~~~~~~~p~~~v~a~k 305 (309)
.||++.+.+.+.|-. .-..+|+++.
T Consensus 203 ~~~~~~e~i~LePy~---~dH~~vv~~y 227 (229)
T PF01269_consen 203 EGFKPLEQITLEPYE---RDHAMVVGRY 227 (229)
T ss_dssp TTCEEEEEEE-TTTS---TTEEEEEEEE
T ss_pred cCCChheEeccCCCC---CCcEEEEEEe
Confidence 789998988887743 3335666653
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.5e-05 Score=72.74 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=46.9
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC----------CcEE-EecCCC-CCCCCCCCCceeEE
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL----------TEYV-VQDLNL-NPKLPFEDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~----------i~~~-~~D~~~-~~~lp~~~~sfDlV 212 (309)
++.++||||||.|.. +....++.+++|+|+++.+++.|+++ +++. +.|... ...+..+++.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 468999999997733 23334578999999999999988764 2332 223210 01111235689999
Q ss_pred Eeccchh
Q 021661 213 TNVVSVD 219 (309)
Q Consensus 213 is~~vl~ 219 (309)
+|+-=++
T Consensus 194 vcNPPf~ 200 (321)
T PRK11727 194 LCNPPFH 200 (321)
T ss_pred EeCCCCc
Confidence 9985443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.4e-05 Score=68.70 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=65.7
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCCCCCC-ceeE
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDN-SFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp~~~~-sfDl 211 (309)
.+.+||=||.|.|... ....+..+|+.+|+++.+++.+++ +++++..|+. .-+.-..+ +||+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~--~~l~~~~~~~yDv 153 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR--KFLKETQEEKYDV 153 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH--HHHHTSSST-EEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH--HHHHhccCCcccE
Confidence 3789999999877543 222335699999999999997764 3678888872 11222233 8999
Q ss_pred EEeccchhccC----CHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 212 ITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 212 Vis~~vl~~l~----d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|+.-..-...+ --.++++.+.++|+|||.+++...++
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 99743221111 12689999999999999999876433
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.6e-05 Score=71.95 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=49.3
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||||||+|..... .....+|+++|+++.|++.+++ +++++++|+ ...++ ..||+|+++.
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da---l~~~~--~~~d~VvaNl 109 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA---LKTEF--PYFDVCVANV 109 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH---hhhcc--cccCEEEecC
Confidence 4578999999999965322 2235689999999999987653 378899998 55543 3689999874
Q ss_pred ch
Q 021661 217 SV 218 (309)
Q Consensus 217 vl 218 (309)
-.
T Consensus 110 PY 111 (294)
T PTZ00338 110 PY 111 (294)
T ss_pred Cc
Confidence 33
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.8e-05 Score=67.28 Aligned_cols=106 Identities=20% Similarity=0.210 Sum_probs=73.7
Q ss_pred HHHHHHHHhhCCC--CCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhh-------CCC-C------------
Q 021661 132 AALTKYYSEVFPP--SNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKR-------NPV-L------------ 188 (309)
Q Consensus 132 ~~l~~~~~~~l~~--~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~-------a~~-~------------ 188 (309)
..+.+.+.+.++. ......+||=-|||.|+.. ..+..+..+.|.|+|--|+-. ..+ +
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceeccc
Confidence 3445566666653 2344679999999999654 444457799999999988632 111 0
Q ss_pred ----------------------------CcEEEecCCCCCCCCCC---CCceeEEEeccchhccCCHHHHHHHHHhhccc
Q 021661 189 ----------------------------TEYVVQDLNLNPKLPFE---DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKP 237 (309)
Q Consensus 189 ----------------------------i~~~~~D~~~~~~lp~~---~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkp 237 (309)
.....+|. ..+..+ .++||+|+.++-|+-..+.-+.|+.|.++|||
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF---~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDF---LEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCcc---EEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhcc
Confidence 12333443 222223 36899999999999888999999999999999
Q ss_pred CcE
Q 021661 238 GGL 240 (309)
Q Consensus 238 GG~ 240 (309)
||.
T Consensus 195 gG~ 197 (270)
T PF07942_consen 195 GGY 197 (270)
T ss_pred CCE
Confidence 993
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=97.75 E-value=1.1e-05 Score=73.95 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCeEEEECCCcchhccC-CCCC-CeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 149 GVSILDLCSSWVSHFPP-GYKQ-DRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~~~-~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
+.+|||+-|=+|.+... +..+ .+|+.+|.|..+++.+++| ++|++.|+. ..+. -..++||+||+
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf--~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF--KFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH--HHHHHHHHTT-EEEEEE
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH--HHHHHHhcCCCCCEEEE
Confidence 78999998865543322 2233 3899999999999987764 678999983 1121 12468999996
Q ss_pred cc------chhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VV------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~------vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
-- ...-..+..+.+..+.++|+|||.|++....+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 41 11111356789999999999999987776654
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.7e-05 Score=67.53 Aligned_cols=98 Identities=17% Similarity=0.130 Sum_probs=59.7
Q ss_pred CCCCeEEEECCCcchhccCC---C-CCCeEEEEeCCHHHHhhCCCCCcEE--------EecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFPPG---Y-KQDRIVGMGMNEEELKRNPVLTEYV--------VQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~---~-~~~~v~giD~S~~~l~~a~~~i~~~--------~~D~~~~~~lp~~~~sfDlVis 214 (309)
..+.+|||+|||.|..+..+ . ...+++++|.|+.|++.++....-. ..+.. ....++ ...|+|++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~--~~~DLvi~ 108 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLY-RDFLPF--PPDDLVIA 108 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhh-cccccC--CCCcEEEE
Confidence 45679999999977543221 2 2458999999999999776531110 01110 011222 23499999
Q ss_pred ccchhccCC--HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+++|..+++ ...+++++.+.+.+ =+++|+-.++
T Consensus 109 s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEpGt~ 143 (274)
T PF09243_consen 109 SYVLNELPSAARAELVRSLWNKTAP-VLVLVEPGTP 143 (274)
T ss_pred ehhhhcCCchHHHHHHHHHHHhccC-cEEEEcCCCh
Confidence 999999986 23566666666654 2445554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=7.4e-05 Score=67.62 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=64.9
Q ss_pred CCCeEEEECCCcchhccCCCC-CCeEEEEeCCHHHHhhCCCC------------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHFPPGYK-QDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~~~-~~~v~giD~S~~~l~~a~~~------------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.+.+||=||.|-|..+....+ ..+|+.+|+.+++++.+++. ++++. .. .+ ...++||+||.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~---~~--~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QL---LD--LDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hh---hh--ccCCcCCEEEE
Confidence 378999999997755533322 24999999999999988873 22221 11 11 12367999998
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
-.. ....+.+.+.++|+|||.++....++.
T Consensus 146 Ds~-----~~~~fy~~~~~~L~~~Gi~v~Qs~sp~ 175 (262)
T PRK00536 146 LQE-----PDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred cCC-----CChHHHHHHHHhcCCCcEEEECCCCcc
Confidence 743 457889999999999999998755443
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.6e-05 Score=64.92 Aligned_cols=86 Identities=17% Similarity=0.152 Sum_probs=63.9
Q ss_pred eEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhh--------CCCCCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 151 SILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR--------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 151 ~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~--------a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
+++|||+|.| ..+.-.+|..+++.+|.+..-+.. .-.+++.+...+ ++ +....+||+|++-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~---E~-~~~~~~fd~v~aRA--- 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRA---EE-PEYRESFDVVTARA--- 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-H---HH-TTTTT-EEEEEEES---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeee---cc-cccCCCccEEEeeh---
Confidence 8999999966 445556788999999999764332 223588889988 66 44567899999854
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+.....+++-+.+.|++||.+++-
T Consensus 124 -v~~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 124 -VAPLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred -hcCHHHHHHHHHHhcCCCCEEEEE
Confidence 457789999999999999987664
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0003 Score=65.33 Aligned_cols=88 Identities=22% Similarity=0.204 Sum_probs=64.7
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCC-CC---CcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNP-VL---TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~-~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
-...+|+|.|.|+.+ ...+ .+|-++++....+..+. .. ++.+-+|.. .+.| . -|+|++-.+|||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f--p~ik~infdlp~v~~~a~~~~~gV~~v~gdmf--q~~P--~--~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY--PHIKGINFDLPFVLAAAPYLAPGVEHVAGDMF--QDTP--K--GDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC--CCCceeecCHHHHHhhhhhhcCCcceeccccc--ccCC--C--cCeEEEEeecccC
Confidence 368999999988543 2333 34777777766655443 33 688888874 3444 3 3699999999999
Q ss_pred CC--HHHHHHHHHhhcccCcEEEEE
Q 021661 222 TK--PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 222 ~d--~~~~l~~i~rvLkpGG~lii~ 244 (309)
+| ..++|++++..|+|||.+++-
T Consensus 250 tDedcvkiLknC~~sL~~~GkIiv~ 274 (342)
T KOG3178|consen 250 TDEDCVKILKNCKKSLPPGGKIIVV 274 (342)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEE
Confidence 76 469999999999999966553
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00088 Score=56.79 Aligned_cols=98 Identities=17% Similarity=0.147 Sum_probs=66.2
Q ss_pred CCeEEEECCCcch---hcc-CCCCCCeEEEEeCCHHHHhh-------CCCCCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVS---HFP-PGYKQDRIVGMGMNEEELKR-------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~---~~~-~~~~~~~v~giD~S~~~l~~-------a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
..-+||||||+|. ++. ...++..+.++|+|+.+++. .+.+++.++.|+. ..+ ..++.|+++.+--
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~--~~l--~~~~VDvLvfNPP 119 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLL--SGL--RNESVDVLVFNPP 119 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHH--hhh--ccCCccEEEECCC
Confidence 5689999999883 222 23467789999999999876 3334788899983 233 3488999986521
Q ss_pred h----------h-----cc--CC----HHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 218 V----------D-----YL--TK----PIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 218 l----------~-----~l--~d----~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
. + |. .+ .++++.++-.+|.|.|.+++-+.....
T Consensus 120 YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 120 YVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred cCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 1 1 11 12 246777788899999988776554333
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.4e-05 Score=69.27 Aligned_cols=109 Identities=21% Similarity=0.316 Sum_probs=67.0
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhccCCC----------CCCeEEEEeCCHHHHhhCCCC----------CcEEEe
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY----------KQDRIVGMGMNEEELKRNPVL----------TEYVVQ 194 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~----------~~~~v~giD~S~~~l~~a~~~----------i~~~~~ 194 (309)
.+++.+.+.. .++.+|||-+||+|.++..+. ...+++|+|+++.++..++-+ .....+
T Consensus 35 ~~l~~~~~~~--~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~ 112 (311)
T PF02384_consen 35 VDLMVKLLNP--KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQG 112 (311)
T ss_dssp HHHHHHHHTT---TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES
T ss_pred HHHHHhhhhc--cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccc
Confidence 3344444432 456789999999997654332 456899999999998766532 347777
Q ss_pred cCCCCCCCC-CC-CCceeEEEecc--chh-c----c-CC-------------HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 195 DLNLNPKLP-FE-DNSFDVITNVV--SVD-Y----L-TK-------------PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 195 D~~~~~~lp-~~-~~sfDlVis~~--vl~-~----l-~d-------------~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|. -..+ .. ...||+|+++- ... + . .+ .-.++..+.+.||+||.+++-+|+.
T Consensus 113 d~---l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 113 DS---LENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp -T---TTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred cc---ccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 76 2222 22 46899999873 211 1 0 00 1258899999999999887776643
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00018 Score=65.78 Aligned_cols=95 Identities=15% Similarity=0.121 Sum_probs=67.6
Q ss_pred CeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC------------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 150 VSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 150 ~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~------------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.+||-||.|-|..+ ....+-.+++.+|+++..++.+++. ++.+..|.. .-+.-..++||+|++
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~--~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGV--EFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHH--HHHHhCCCcCCEEEE
Confidence 69999999977554 3334456999999999999988763 456666652 122222347999998
Q ss_pred ccchhcc-C----CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSVDYL-T----KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l-~----d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
-..=. . + .-..+++.+++.|+++|+++....+
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 64322 1 0 1279999999999999999987444
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.60 E-value=5.5e-05 Score=65.82 Aligned_cols=88 Identities=19% Similarity=0.298 Sum_probs=57.5
Q ss_pred CCCCeEEEECCCcchhccC-C--CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFPP-G--YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~--~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++..|||+.||.|.+... + .+...|+++|++|..++..+++ +..+.+|+ ..+.. .+.||.|++
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~---~~~~~-~~~~drvim 175 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDA---REFLP-EGKFDRVIM 175 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-G---GG----TT-EEEEEE
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCH---HHhcC-ccccCEEEE
Confidence 3489999999998854322 2 3567899999999988765442 67889998 55543 678999998
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~li 242 (309)
+.- ..-..+|..+.+++|+||.+.
T Consensus 176 ~lp----~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 176 NLP----ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp --T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred CCh----HHHHHHHHHHHHHhcCCcEEE
Confidence 652 233468888999999999764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00014 Score=68.83 Aligned_cols=105 Identities=9% Similarity=0.017 Sum_probs=64.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK 201 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~ 201 (309)
...+.+.+.+.+.. .+.+|||++||+|... ..+....+|+|+|+|++|++.++++ ++++++|+ .+
T Consensus 183 ~~~l~~~v~~~~~~---~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~---~~ 256 (353)
T TIGR02143 183 NIKMLEWACEVTQG---SKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSA---EE 256 (353)
T ss_pred HHHHHHHHHHHhhc---CCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCH---HH
Confidence 34445555555432 1347999999999543 2333345899999999999987764 67888898 33
Q ss_pred -CC-------C---C-----CCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 202 -LP-------F---E-----DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 202 -lp-------~---~-----~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++ + . ...||+|+..-- .-.-..++++.+. +|+++++++..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC~ 312 (353)
T TIGR02143 257 FTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISCN 312 (353)
T ss_pred HHHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEcC
Confidence 21 0 0 113798887432 1111235555554 47888888854
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00019 Score=68.25 Aligned_cols=108 Identities=7% Similarity=0.014 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCC
Q 021661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNL 198 (309)
Q Consensus 128 ~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~ 198 (309)
....+.+.+.+.+.+.. .+.++||++||+|... ..+....+|+|+|+|+.|++.++++ ++++.+|+
T Consensus 189 ~~~~e~l~~~v~~~~~~---~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~-- 263 (362)
T PRK05031 189 AAVNEKMLEWALDATKG---SKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSA-- 263 (362)
T ss_pred HHHHHHHHHHHHHHhhc---CCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCH--
Confidence 33445556666665542 1357999999998543 3333345899999999999987764 67899998
Q ss_pred CCC-CC-CC--------------CCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 199 NPK-LP-FE--------------DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 199 ~~~-lp-~~--------------~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+ ++ +. ...||+|+..--= -.-..++++.+.+ |+++++++..
T Consensus 264 -~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~~---~~~ivyvSC~ 321 (362)
T PRK05031 264 -EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQA---YERILYISCN 321 (362)
T ss_pred -HHHHHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHHc---cCCEEEEEeC
Confidence 33 21 10 2258999975321 1112455555544 7788888754
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0035 Score=54.12 Aligned_cols=159 Identities=17% Similarity=0.153 Sum_probs=95.7
Q ss_pred HHHHHHHHhhCC-CCCCCCCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHh----hCC--CCCcEEEecCCCCCC
Q 021661 132 AALTKYYSEVFP-PSNTPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELK----RNP--VLTEYVVQDLNLNPK 201 (309)
Q Consensus 132 ~~l~~~~~~~l~-~~~~~~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~----~a~--~~i~~~~~D~~~~~~ 201 (309)
.+++..+..-+. -...++.+||=+|+.+| ++.....+.+.+.|+++|+++.. .++ .|+--+..|++.++.
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~ 138 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEK 138 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHH
Confidence 344444443333 12467899999999655 45555566789999999998654 343 457778889843222
Q ss_pred CCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH--HhCC
Q 021661 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YAGG 279 (309)
Q Consensus 202 lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~--~~~G 279 (309)
...--+..|+|+.--+= -.+.+-+..++..-||+||.+++..-.++.- --.+.-.++.+-.. +..|
T Consensus 139 Y~~~Ve~VDviy~DVAQ--p~Qa~I~~~Na~~FLk~~G~~~i~iKArSId----------vT~dp~~vf~~ev~kL~~~~ 206 (231)
T COG1889 139 YRHLVEKVDVIYQDVAQ--PNQAEILADNAEFFLKKGGYVVIAIKARSID----------VTADPEEVFKDEVEKLEEGG 206 (231)
T ss_pred hhhhcccccEEEEecCC--chHHHHHHHHHHHhcccCCeEEEEEEeeccc----------ccCCHHHHHHHHHHHHHhcC
Confidence 22222458988864320 1123457889999999999777765432210 01112233333222 5688
Q ss_pred CCCCceeeccCCCCCCCCcEEEEEEe
Q 021661 280 YEPPQAVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 280 f~~~~~~~~~~~~~~~~p~~~v~a~k 305 (309)
|+..+.+++.|.. .-.+.|++++
T Consensus 207 f~i~e~~~LePye---~DH~~i~~~~ 229 (231)
T COG1889 207 FEILEVVDLEPYE---KDHALIVAKY 229 (231)
T ss_pred ceeeEEeccCCcc---cceEEEEEee
Confidence 9999999887754 2235566654
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.50 E-value=7.3e-05 Score=63.76 Aligned_cols=97 Identities=15% Similarity=0.257 Sum_probs=54.6
Q ss_pred CCCeEEEECCCcchh---ccCCC-CCCeEEEEeCCHHHHhhCCCCCcEEEecCCCC---CCC----CCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSH---FPPGY-KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLN---PKL----PFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~-~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~---~~l----p~~~~sfDlVis~~ 216 (309)
++.++||+||+.|.. +.... +..+|+|+|+.+.. -.+++.++++|.... ..+ +-..+.||+|+|-.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~---~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~ 99 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD---PLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDM 99 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG---S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE--
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccc---cccceeeeecccchhhHHHhhhhhccccccCcceecccc
Confidence 468999999997753 22322 46799999998771 113344445554211 111 11126899999976
Q ss_pred chhccCC-----------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 217 SVDYLTK-----------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 217 vl~~l~d-----------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+.....+ ....+.-+...|||||.+++-+..
T Consensus 100 ~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 100 APNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp -----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 3332221 134566666889999988876543
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00066 Score=58.98 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=67.0
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchh---c-cCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC-----C
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSH---F-PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----P 203 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~---~-~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l-----p 203 (309)
++.++..++ ....++..|+|||+-.|.. + ....+...|+|+|+.|--.-. ++.++++|+.....+ .
T Consensus 32 KL~el~~k~--~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~---~V~~iq~d~~~~~~~~~l~~~ 106 (205)
T COG0293 32 KLLELNEKF--KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP---GVIFLQGDITDEDTLEKLLEA 106 (205)
T ss_pred HHHHHHHhc--CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC---CceEEeeeccCccHHHHHHHH
Confidence 444444443 2245689999999965532 2 333455679999998753322 389999999432111 1
Q ss_pred CCCCceeEEEeccc--------hhccCC---HHHHHHHHHhhcccCcEEEEEec
Q 021661 204 FEDNSFDVITNVVS--------VDYLTK---PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 204 ~~~~sfDlVis~~v--------l~~l~d---~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+....+|+|+|-.+ .+|... -..++.-+..+|+|||.+++-+-
T Consensus 107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~f 160 (205)
T COG0293 107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVF 160 (205)
T ss_pred cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEE
Confidence 23445799996421 222211 14567777889999998887644
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00036 Score=60.64 Aligned_cols=94 Identities=18% Similarity=0.145 Sum_probs=69.3
Q ss_pred CCCCeEEEECCCcc--hhccCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCC-CCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWV--SHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKL-PFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g--~~~~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~l-p~~~~sfDlVis~~ 216 (309)
.++.+||+||-|.| ....+..+-.+-+-|+..++.++..+. ++-...+-.. .-+ .+++++||-|+--.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We--Dvl~~L~d~~FDGI~yDT 177 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE--DVLNTLPDKHFDGIYYDT 177 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchH--hhhccccccCcceeEeec
Confidence 45899999999977 344555556666778999988886554 3555555541 112 25688899999876
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~li 242 (309)
--++..|...+.+.+.|+|||+|.+-
T Consensus 178 y~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 178 YSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred hhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 66777888999999999999999763
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00024 Score=60.81 Aligned_cols=113 Identities=18% Similarity=0.087 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHh-hCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecC
Q 021661 129 PAIAALTKYYSE-VFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDL 196 (309)
Q Consensus 129 ~~~~~l~~~~~~-~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~ 196 (309)
...+.+.+++.. .+. +.++||+=+|+|..-..+ +...+++.+|.+.......++| .+.+..|+
T Consensus 28 rVREalFNil~~~~i~-----g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da 102 (187)
T COG0742 28 RVREALFNILAPDEIE-----GARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDA 102 (187)
T ss_pred HHHHHHHHhccccccC-----CCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecH
Confidence 344455555554 233 889999988888654333 3345999999999988876654 56777887
Q ss_pred CCCCCCCCCC--CceeEEEeccchh-ccCCHHHHHHH--HHhhcccCcEEEEEecCc
Q 021661 197 NLNPKLPFED--NSFDVITNVVSVD-YLTKPIEVFKE--MCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 197 ~~~~~lp~~~--~sfDlVis~~vl~-~l~d~~~~l~~--i~rvLkpGG~lii~~~~~ 248 (309)
. ..++... ++||+|+.---++ -+.+....+.. -...|+|+|.++++....
T Consensus 103 ~--~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 103 L--RALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred H--HHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence 2 2222222 2599999865444 12233344444 457899999999997754
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=58.29 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=65.6
Q ss_pred CCeEEEECCCcc--h-hcc-CCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCC-----CCCCcee
Q 021661 149 GVSILDLCSSWV--S-HFP-PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-----FEDNSFD 210 (309)
Q Consensus 149 ~~~ILDiGcG~g--~-~~~-~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp-----~~~~sfD 210 (309)
+.+.||||.=+| . ..+ ...+.++|+++|+++...+.+.+ +++++++++. +.|+ .+.++||
T Consensus 74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~--esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL--ESLDELLADGESGTFD 151 (237)
T ss_pred CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh--hhHHHHHhcCCCCcee
Confidence 679999998444 2 222 33457899999999988776543 3889999873 2232 3568899
Q ss_pred EEEeccchhcc-CCHHHHHHHHHhhcccCcEEEEE
Q 021661 211 VITNVVSVDYL-TKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 211 lVis~~vl~~l-~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.++.- |- .+......++.++||+||.+++.
T Consensus 152 faFvD----adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 152 FAFVD----ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEEc----cchHHHHHHHHHHHhhcccccEEEEe
Confidence 99863 33 23458899999999999999886
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00066 Score=70.01 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=49.3
Q ss_pred eEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCC--CCceeEEEeccch-hccC---CHHHHHHHH---H
Q 021661 171 RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE--DNSFDVITNVVSV-DYLT---KPIEVFKEM---C 232 (309)
Q Consensus 171 ~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~--~~sfDlVis~~vl-~~l~---d~~~~l~~i---~ 232 (309)
+++|+|+++.+++.|++| +++.++|+ .+++.+ .++||+|+++--. ..+. +...+.+++ .
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~---~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~l 334 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV---ADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRL 334 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh---hhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHH
Confidence 699999999999988875 67889998 666533 3579999998422 2222 223333333 4
Q ss_pred hhcccCcEEEEEecC
Q 021661 233 QVLKPGGLAIVSFSN 247 (309)
Q Consensus 233 rvLkpGG~lii~~~~ 247 (309)
+...+|+.+++-+++
T Consensus 335 k~~~~g~~~~llt~~ 349 (702)
T PRK11783 335 KQQFGGWNAALFSSS 349 (702)
T ss_pred HHhCCCCeEEEEeCC
Confidence 444488877665554
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00058 Score=62.97 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=63.6
Q ss_pred CCCCCeEEEECCCcchh--ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 146 NTPGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~--~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
+.++..|||+|||.|.. ++......+|.+++-| +|.+.|++ ++..+.+.+ +++.+++ +.|+||+
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKi---EdieLPE-k~DviIS 249 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKI---EDIELPE-KVDVIIS 249 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcc---ccccCch-hccEEEe
Confidence 35678999999998853 3333345689999986 46665554 277888888 7777664 5999998
Q ss_pred ccchhccCC--HHHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
--+=.-+-+ .-+..-.+++.|||.|.++=++.
T Consensus 250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500|consen 250 EPMGYMLVNERMLESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred ccchhhhhhHHHHHHHHHHHhhcCCCCcccCccc
Confidence 542222222 12233345699999998765543
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0054 Score=59.67 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=60.8
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHH----HHhh--CCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEE----ELKR--NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~----~l~~--a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
-..|+|..+|.|.+.+... ...|..+-.-+. .|.. .+. .--+-.|.. +.++.-+.+||+|.+.+++....
T Consensus 366 iRNVMDMnAg~GGFAAAL~-~~~VWVMNVVP~~~~ntL~vIydRG-LIG~yhDWC--E~fsTYPRTYDLlHA~~lfs~~~ 441 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALI-DDPVWVMNVVPVSGPNTLPVIYDRG-LIGVYHDWC--EAFSTYPRTYDLLHADGLFSLYK 441 (506)
T ss_pred eeeeeeecccccHHHHHhc-cCCceEEEecccCCCCcchhhhhcc-cchhccchh--hccCCCCcchhheehhhhhhhhc
Confidence 4699999999886654433 222444433332 1111 111 112334552 45665568999999999988875
Q ss_pred ---CHHHHHHHHHhhcccCcEEEEE
Q 021661 223 ---KPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 223 ---d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+.+.+|-||-|+|+|||.++|.
T Consensus 442 ~rC~~~~illEmDRILRP~G~~iiR 466 (506)
T PF03141_consen 442 DRCEMEDILLEMDRILRPGGWVIIR 466 (506)
T ss_pred ccccHHHHHHHhHhhcCCCceEEEe
Confidence 5789999999999999999996
|
; GO: 0008168 methyltransferase activity |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0003 Score=66.97 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=65.7
Q ss_pred CCeEEEECCCcchhccC-CC---CCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCC-CCCCCceeEEEec
Q 021661 149 GVSILDLCSSWVSHFPP-GY---KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKL-PFEDNSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~---~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~l-p~~~~sfDlVis~ 215 (309)
+.+|||+.||+|..... +. ...+|+++|+|+.+++..++| +++++.|+ ..+ ....+.||+|...
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da---~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDA---ANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhH---HHHHHHhCCCCCEEEeC
Confidence 36899999998843222 11 235899999999999877654 45777787 332 2223579999885
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
- . ..+..++..+.+.+++||++.++-
T Consensus 122 P-f---Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 122 P-F---GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-C---CCcHHHHHHHHHhcccCCEEEEEe
Confidence 4 2 456789999999999999999883
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00058 Score=62.20 Aligned_cols=95 Identities=12% Similarity=0.170 Sum_probs=57.2
Q ss_pred CCeEEEECCCcc----hhccCC-CCCCeEEEEeCCHHHHhhCCC----------CCcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWV----SHFPPG-YKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g----~~~~~~-~~~~~v~giD~S~~~l~~a~~----------~i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+.+|+=||||.- ..+... .++..|+++|+++++++.+++ .+.|+.+|. ...+.+-..||+|+
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~---~~~~~dl~~~DvV~ 197 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADV---LDVTYDLKEYDVVF 197 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-G---GGG-GG----SEEE
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecch---hccccccccCCEEE
Confidence 469999999932 333332 346789999999999887754 278999998 55554446799999
Q ss_pred eccchhcc-CCHHHHHHHHHhhcccCcEEEEEec
Q 021661 214 NVVSVDYL-TKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 214 s~~vl~~l-~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
......-- .+..++|.++.+.++||..+++-..
T Consensus 198 lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa 231 (276)
T PF03059_consen 198 LAALVGMDAEPKEEILEHLAKHMAPGARLVVRSA 231 (276)
T ss_dssp E-TT-S----SHHHHHHHHHHHS-TTSEEEEEE-
T ss_pred EhhhcccccchHHHHHHHHHhhCCCCcEEEEecc
Confidence 77644422 3678999999999999999988644
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.003 Score=61.30 Aligned_cols=118 Identities=19% Similarity=0.239 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCC
Q 021661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLN 197 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~ 197 (309)
......++.++..+.+.. .++.++||+=||.|.+ +..+....+|+|+|+++++++.|+++ ++|+.+|+
T Consensus 274 N~~~~ekl~~~a~~~~~~--~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~a- 350 (432)
T COG2265 274 NPAVAEKLYETALEWLEL--AGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDA- 350 (432)
T ss_pred CHHHHHHHHHHHHHHHhh--cCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCH-
Confidence 445556677777777763 4568999999998864 45556678999999999999988764 78888998
Q ss_pred CCCCCCC---CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHH
Q 021661 198 LNPKLPF---EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK 253 (309)
Q Consensus 198 ~~~~lp~---~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~ 253 (309)
+.... ....+|+|+..--=.- -.+.+++.+.+ ++|-..+++|. |+..+-.
T Consensus 351 --e~~~~~~~~~~~~d~VvvDPPR~G--~~~~~lk~l~~-~~p~~IvYVSC-NP~TlaR 403 (432)
T COG2265 351 --EEFTPAWWEGYKPDVVVVDPPRAG--ADREVLKQLAK-LKPKRIVYVSC-NPATLAR 403 (432)
T ss_pred --HHHhhhccccCCCCEEEECCCCCC--CCHHHHHHHHh-cCCCcEEEEeC-CHHHHHH
Confidence 55432 2357899987310000 01245555544 57777888874 4444333
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.01 Score=52.51 Aligned_cols=154 Identities=14% Similarity=0.138 Sum_probs=93.4
Q ss_pred CCCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhC----CCCCcEEEecCCCCCCCC---CCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRN----PVLTEYVVQDLNLNPKLP---FEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a----~~~i~~~~~D~~~~~~lp---~~~~sfDlVis~~v 217 (309)
.++..+||||+.+|.+. ++.....+|+|+|..-.++..- .+-+.+...|+ ..+. +. +..|+|+|--+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~---r~l~~~~~~-~~~d~~v~DvS 153 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNV---RYLTPEDFT-EKPDLIVIDVS 153 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCCh---hhCCHHHcc-cCCCeEEEEee
Confidence 56899999999988654 3444456999999998776532 22244555555 4432 22 25789998776
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEe-cCcchhHHHhhhh-hcCCCCchhHhHHH--HHHHhCCCCCCceeeccCCCC
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSF-SNRCFWTKAISIW-TSTGDADHVMIVGA--YFHYAGGYEPPQAVDISPNPG 293 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~-~~~~~~~~~~~~w-~~~~~~~h~~~~~~--~f~~~~Gf~~~~~~~~~~~~~ 293 (309)
+. ....+|..+..+|+|+|.++.-+ |+-..-......- .-.+...|.....+ -+....||....+.-..-..+
T Consensus 154 FI---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~~Spi~G~ 230 (245)
T COG1189 154 FI---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLIKSPIKGG 230 (245)
T ss_pred hh---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeEccCccCC
Confidence 65 56789999999999999665433 2211111111100 02244455555555 344556999666555433334
Q ss_pred CCCCcEEEEEEeCC
Q 021661 294 RSDPMYVVYSRKAS 307 (309)
Q Consensus 294 ~~~p~~~v~a~k~~ 307 (309)
..+.=|.+..+|..
T Consensus 231 ~GNiE~l~~~~k~~ 244 (245)
T COG1189 231 KGNIEFLLLLKKSG 244 (245)
T ss_pred CCcEeeeeeeeccC
Confidence 44555777777654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00079 Score=62.06 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=49.0
Q ss_pred CCCCeEEEECCCcchhc---cCCC-CCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCC--CCCC--ceeEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPGY-KQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLP--FEDN--SFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~-~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp--~~~~--sfDlV 212 (309)
.++..+||.+||.|.+. .... +.++|+|+|.++.|++.+++ +++++++|. .++. .+++ ++|.|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f---~~l~~~l~~~~~~vDgI 94 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNF---SNLKEVLAEGLGKVDGI 94 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCH---HHHHHHHHcCCCccCEE
Confidence 45789999999988542 3333 36899999999999998764 477888888 4442 1122 79999
Q ss_pred Eecc
Q 021661 213 TNVV 216 (309)
Q Consensus 213 is~~ 216 (309)
++..
T Consensus 95 l~DL 98 (296)
T PRK00050 95 LLDL 98 (296)
T ss_pred EECC
Confidence 9764
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=60.34 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=67.3
Q ss_pred CCeEEEECCCcchhc-cCCCCCC-eEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQD-RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~-~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
|.+|||+=+|.|-+. ..+..+. +|+++|+||.+++..++| +..+++|. ......-+.+|-|+++..
T Consensus 189 GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~---rev~~~~~~aDrIim~~p 265 (341)
T COG2520 189 GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA---REVAPELGVADRIIMGLP 265 (341)
T ss_pred CCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccH---HHhhhccccCCEEEeCCC
Confidence 899999988888443 3333333 499999999998876654 67899999 666544477999999763
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+..+++..+.+.+|+||.+..-
T Consensus 266 ----~~a~~fl~~A~~~~k~~g~iHyy 288 (341)
T COG2520 266 ----KSAHEFLPLALELLKDGGIIHYY 288 (341)
T ss_pred ----CcchhhHHHHHHHhhcCcEEEEE
Confidence 34567888999999999977553
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00022 Score=59.19 Aligned_cols=99 Identities=16% Similarity=0.107 Sum_probs=66.9
Q ss_pred CCeEEEECCC-cc---hhccCCCCCCeEEEEeCCHHHHhhCCC----C-------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSS-WV---SHFPPGYKQDRIVGMGMNEEELKRNPV----L-------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG-~g---~~~~~~~~~~~v~giD~S~~~l~~a~~----~-------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+.+|||+|.| +| ..++...+...|.-.|-++..++-.++ + +.....+... .....+.++||+|+
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~-aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG-AQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh-hHHHHhhCcccEEE
Confidence 6799999999 33 334444577899999999988874432 1 1111122200 11123456899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|...+-.-...+...+.|.+.|+|.|..++..|.+
T Consensus 109 aADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 109 AADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred eccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 99877655556788999999999999877776654
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0044 Score=54.46 Aligned_cols=135 Identities=14% Similarity=0.087 Sum_probs=83.2
Q ss_pred CCeEEEECCCcc---hhccCCCCCCeEEEEeCCHH---HHhhCC-----CCCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEE---ELKRNP-----VLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~---~l~~a~-----~~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+++|||+|.| .-+...+|..+|+-+|.... .|+.+. .+++++++.+ ++..-....||+|+|-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~Ra---E~~~~~~~~~D~vtsRA- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRA---EEFGQEKKQYDVVTSRA- 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhH---hhcccccccCcEEEeeh-
Confidence 579999999966 33445678889999999864 333332 3488888888 77653221299999854
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCCCCCC
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDP 297 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p 297 (309)
+.+....++-+...+|+||.++.-.. . ...+...-..... ..-||....+.....+. ...+
T Consensus 144 ---va~L~~l~e~~~pllk~~g~~~~~k~------------~--~~~~e~~e~~~a~-~~~~~~~~~~~~~~~p~-~~~~ 204 (215)
T COG0357 144 ---VASLNVLLELCLPLLKVGGGFLAYKG------------L--AGKDELPEAEKAI-LPLGGQVEKVFSLTVPE-LDGE 204 (215)
T ss_pred ---ccchHHHHHHHHHhcccCCcchhhhH------------H--hhhhhHHHHHHHH-HhhcCcEEEEEEeecCC-CCCc
Confidence 44667788888999999987653100 0 0011111112222 33556666666654433 4445
Q ss_pred cEEEEEEeC
Q 021661 298 MYVVYSRKA 306 (309)
Q Consensus 298 ~~~v~a~k~ 306 (309)
..+++.+|.
T Consensus 205 r~l~ii~~~ 213 (215)
T COG0357 205 RHLVIIRKR 213 (215)
T ss_pred eEEEEEecc
Confidence 677777664
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.01 Score=53.53 Aligned_cols=130 Identities=18% Similarity=0.137 Sum_probs=88.1
Q ss_pred CCCCCeEEEECCCcchhc----cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCC--CCCcee
Q 021661 146 NTPGVSILDLCSSWVSHF----PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPF--EDNSFD 210 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~----~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~--~~~sfD 210 (309)
..++.+|||-|.|.|+.. ....|.++++..|+.+.--+.|.+ ++++..-|+ +...| .+..+|
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDV---c~~GF~~ks~~aD 179 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDV---CGSGFLIKSLKAD 179 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeec---ccCCccccccccc
Confidence 367999999999988532 334578999999998776666554 388899998 66544 346688
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHH--HHHhCCCCCCceeec
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAY--FHYAGGYEPPQAVDI 288 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~--f~~~~Gf~~~~~~~~ 288 (309)
.|+.- ++.|..++-.++.+||.+|.-+.+++. + ++-+.+- ..++.||.+++++.+
T Consensus 180 aVFLD-----lPaPw~AiPha~~~lk~~g~r~csFSP-C-----------------IEQvqrtce~l~~~gf~~i~~vEv 236 (314)
T KOG2915|consen 180 AVFLD-----LPAPWEAIPHAAKILKDEGGRLCSFSP-C-----------------IEQVQRTCEALRSLGFIEIETVEV 236 (314)
T ss_pred eEEEc-----CCChhhhhhhhHHHhhhcCceEEeccH-H-----------------HHHHHHHHHHHHhCCCceEEEEEe
Confidence 87753 678889999999999998844443331 1 1112221 225579999988887
Q ss_pred cCCCCCCCCcEEEEEEeC
Q 021661 289 SPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 289 ~~~~~~~~p~~~v~a~k~ 306 (309)
.+. +.+.|.+.|.
T Consensus 237 ~~~-----qk~~V~~~~~ 249 (314)
T KOG2915|consen 237 LLV-----QKNGVKTVKL 249 (314)
T ss_pred ehh-----hhhceeeecc
Confidence 662 3355555554
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0022 Score=63.94 Aligned_cols=68 Identities=15% Similarity=0.056 Sum_probs=41.2
Q ss_pred CCCeEEEECCCcchhccCC---C--------CCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC--CCCCC
Q 021661 148 PGVSILDLCSSWVSHFPPG---Y--------KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK--LPFED 206 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~---~--------~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~--lp~~~ 206 (309)
...+|||.|||+|.++... . -...++|+|+++..+..++.+ +.....|.-.... .+-..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3569999999999654221 1 125789999999999877643 2233333210000 01112
Q ss_pred CceeEEEec
Q 021661 207 NSFDVITNV 215 (309)
Q Consensus 207 ~sfDlVis~ 215 (309)
+.||+|+++
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 579999987
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0026 Score=56.84 Aligned_cols=110 Identities=18% Similarity=0.253 Sum_probs=62.3
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcc-hhc--cCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCC
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWV-SHF--PPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPF 204 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g-~~~--~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~ 204 (309)
.+++...+.. ..+..+|+|||||.. ..+ ....++..++|+||+..+++.... ..+....|+ ..-+
T Consensus 93 d~fY~~if~~-~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl---~~~~- 167 (251)
T PF07091_consen 93 DEFYDEIFGR-IPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDL---LSDP- 167 (251)
T ss_dssp HHHHHHHCCC-S---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-T---TTSH-
T ss_pred HHHHHHHHhc-CCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeee---eccC-
Confidence 3444455543 345789999999955 333 233456799999999999886443 356777787 3332
Q ss_pred CCCceeEEEeccchhccCCHH-HHHHHHHhhcccCcEEEEEecCcch
Q 021661 205 EDNSFDVITNVVSVDYLTKPI-EVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~-~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
+....|+.+..=+++-+.... ..-.++...++ .=.++|++|.+..
T Consensus 168 ~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL 213 (251)
T PF07091_consen 168 PKEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSL 213 (251)
T ss_dssp TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES---
T ss_pred CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEecccccc
Confidence 356799999887777664322 12223333332 1278899987543
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0028 Score=57.19 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=50.5
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCC-ceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDN-SFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~-sfDlVis~~ 216 (309)
.++..|||||+|.|.... ......+|+++++.+.+++..++ +++.+.+|+ ...+++.- .++.|+++.
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da---Lk~d~~~l~~~~~vVaNl 103 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDA---LKFDFPSLAQPYKVVANL 103 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCch---hcCcchhhcCCCEEEEcC
Confidence 447899999999996543 33446689999999999886544 377999999 66666542 578888773
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0022 Score=49.94 Aligned_cols=91 Identities=19% Similarity=0.347 Sum_probs=44.7
Q ss_pred ceeEEEeccchhccC------CHHHHHHHHHhhcccCcEEEEEecCcchhHH-------HhhhhhcCCCCchhHhHHHHH
Q 021661 208 SFDVITNVVSVDYLT------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK-------AISIWTSTGDADHVMIVGAYF 274 (309)
Q Consensus 208 sfDlVis~~vl~~l~------d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~-------~~~~w~~~~~~~h~~~~~~~f 274 (309)
.||+|+|..|.-|+. -...+|+.+++.|+|||.++++-.....+.+ ....+....- .-.-+.+|+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~l--rP~~F~~~L 78 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKL--RPDQFEDYL 78 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH------GGGHHHHH
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEE--ChHHHHHHH
Confidence 499999999887763 2468999999999999999999654333321 1111221110 011244555
Q ss_pred HH-hCCCCCCceeeccCC--CCCCCCcEE
Q 021661 275 HY-AGGYEPPQAVDISPN--PGRSDPMYV 300 (309)
Q Consensus 275 ~~-~~Gf~~~~~~~~~~~--~~~~~p~~~ 300 (309)
.. .-||...+.+..... .|..-|+++
T Consensus 79 ~~~evGF~~~e~~~~~~~~~~gF~RpI~l 107 (110)
T PF06859_consen 79 LEPEVGFSSVEELGVPENSSKGFDRPIYL 107 (110)
T ss_dssp TSTTT---EEEEE-------------EEE
T ss_pred HhcccceEEEEEcccCCCCCCCCCCcEEE
Confidence 54 479998887776443 244445443
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0049 Score=57.70 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=69.6
Q ss_pred CCCeEEEECCCcchhcc--CCCC-CCeEEEEeCCHHHHhhCCCC---------------CcEEEecCCCCCCCCCCCCce
Q 021661 148 PGVSILDLCSSWVSHFP--PGYK-QDRIVGMGMNEEELKRNPVL---------------TEYVVQDLNLNPKLPFEDNSF 209 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~-~~~v~giD~S~~~l~~a~~~---------------i~~~~~D~~~~~~lp~~~~sf 209 (309)
...++|-+|.|-|..+. ..+| ..+|+-+|+.|+|++.++.+ ++.+..|+. .-+.-..+.|
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf--~wlr~a~~~f 366 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAF--QWLRTAADMF 366 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHH--HHHHhhcccc
Confidence 35799999999886553 3456 56999999999999998843 566666662 2233344589
Q ss_pred eEEEec------cchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 210 DVITNV------VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 210 DlVis~------~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|.||.. .++-.+. -.++-.-+.|.|+++|++++.-..+
T Consensus 367 D~vIVDl~DP~tps~~rlY-S~eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 367 DVVIVDLPDPSTPSIGRLY-SVEFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred cEEEEeCCCCCCcchhhhh-hHHHHHHHHHhcCcCceEEEecCCC
Confidence 999853 2222221 1478888999999999999986543
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.00026 Score=59.44 Aligned_cols=98 Identities=13% Similarity=0.227 Sum_probs=55.5
Q ss_pred eEEEECCCcc-hhccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCC-C-CCCCc-eeEEEec--
Q 021661 151 SILDLCSSWV-SHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL-P-FEDNS-FDVITNV-- 215 (309)
Q Consensus 151 ~ILDiGcG~g-~~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~l-p-~~~~s-fDlVis~-- 215 (309)
.|||+.||.| ..+..+....+|+++|+++..++.++.| ++++++|. .++ + +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~---~~~~~~~~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDF---FELLKRLKSNKIFDVVFLSPP 78 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H---HHHGGGB------SEEEE---
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCH---HHHHhhccccccccEEEECCC
Confidence 6999999865 4555555578999999999999887654 89999998 333 1 22222 8999965
Q ss_pred -----------cch-hccC--CHHHHHHHHHhhcccCcEEEEEecCcchhHHH
Q 021661 216 -----------VSV-DYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA 254 (309)
Q Consensus 216 -----------~vl-~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~ 254 (309)
+-| ..+. +..++++.+.++- ..+++-+|......+.
T Consensus 79 WGGp~Y~~~~~fdL~~~~~p~~~~~l~~~~~~~t---~nv~l~LPRn~dl~ql 128 (163)
T PF09445_consen 79 WGGPSYSKKDVFDLEKSMQPFNLEDLLKAARKIT---PNVVLFLPRNSDLNQL 128 (163)
T ss_dssp BSSGGGGGSSSB-TTTSSSS--HHHHHHHHHHH----S-EEEEEETTB-HHHH
T ss_pred CCCccccccCccCHHHccCCCCHHHHHHHHHhhC---CCEEEEeCCCCCHHHH
Confidence 222 2222 3456666655553 3466667765544444
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0054 Score=58.05 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=52.2
Q ss_pred EEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccch-hccCC-------HHHHHHHHHhh
Q 021661 172 IVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV-DYLTK-------PIEVFKEMCQV 234 (309)
Q Consensus 172 v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl-~~l~d-------~~~~l~~i~rv 234 (309)
++|+|+++.|++.|+.| ++|.++|+ ..++.+.+.+|+|||+--. +.+.+ ...+.+.+.+.
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~---~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~ 333 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA---TDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRL 333 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch---hhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHH
Confidence 77999999999998876 89999999 7776554789999998411 12222 13455566677
Q ss_pred cccCcEEEEEec
Q 021661 235 LKPGGLAIVSFS 246 (309)
Q Consensus 235 LkpGG~lii~~~ 246 (309)
++--+..+++..
T Consensus 334 ~~~ws~~v~tt~ 345 (381)
T COG0116 334 LAGWSRYVFTTS 345 (381)
T ss_pred hcCCceEEEEcc
Confidence 776677777654
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0017 Score=59.65 Aligned_cols=98 Identities=24% Similarity=0.350 Sum_probs=66.6
Q ss_pred CCCCeEEEECCCcch---hcc-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCC-C-CCCCceeEE
Q 021661 147 TPGVSILDLCSSWVS---HFP-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL-P-FEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~l-p-~~~~sfDlV 212 (309)
.++.+|||+|++.|. ++. .....+.|++.|+++.-+...++ ++.....|. ... + .....||.|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~---~~~~~~~~~~~fd~V 160 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADA---RKLDPKKPESKFDRV 160 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHH---HHHHHHHHTTTEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecc---ccccccccccccchh
Confidence 458899999998662 232 33347899999999987765443 255555676 333 1 223459999
Q ss_pred Ee----c--cchhccCCH----------------HHHHHHHHhhc----ccCcEEEEEecC
Q 021661 213 TN----V--VSVDYLTKP----------------IEVFKEMCQVL----KPGGLAIVSFSN 247 (309)
Q Consensus 213 is----~--~vl~~l~d~----------------~~~l~~i~rvL----kpGG~lii~~~~ 247 (309)
+. + .++..-++. .+.|+++.+.+ ||||.++.++..
T Consensus 161 lvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 161 LVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp EEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred hcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 94 2 234433321 47899999999 999999998874
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0032 Score=54.05 Aligned_cols=96 Identities=15% Similarity=0.074 Sum_probs=64.4
Q ss_pred CCCCeEEEECCCcchhc-cCCC-CCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGY-KQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~-~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
-.+.+|||+|+|.|... ..+. ....|+..|+.+..++..+-| +.+...|+ -. ++..||+|+...+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~---~g---~~~~~Dl~LagDl 151 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADL---IG---SPPAFDLLLAGDL 151 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccc---cC---CCcceeEEEeece
Confidence 45889999999988432 2222 234799999998766644332 56666666 22 4567999999998
Q ss_pred hhccCCHHHHHHHHHhhcccCc-EEEEEecCcc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRC 249 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG-~lii~~~~~~ 249 (309)
+..-+...+.+. ..+.|+..| .+++..+.+.
T Consensus 152 fy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 152 FYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred ecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 776555566777 666777777 5555556543
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.00085 Score=55.76 Aligned_cols=97 Identities=23% Similarity=0.328 Sum_probs=62.0
Q ss_pred CCeEEEECCC--cchhccCCCCCCeEEEEeCCHHHHhhC-CCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhccC--
Q 021661 149 GVSILDLCSS--WVSHFPPGYKQDRIVGMGMNEEELKRN-PVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT-- 222 (309)
Q Consensus 149 ~~~ILDiGcG--~g~~~~~~~~~~~v~giD~S~~~l~~a-~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~-- 222 (309)
+++.+=+|.. |-..........+|..+|.++--++.- +.+ ..+...|.. .+..--.++||.+.|.++++|.-
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi~p~df~--~~~~~y~~~fD~~as~~siEh~GLG 79 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSILPVDFA--KNWQKYAGSFDFAASFSSIEHFGLG 79 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccccHHHHH--HHHHHhhccchhhheechhcccccc
Confidence 4567777776 444455555566788888776433221 111 122222221 11112246799999999999972
Q ss_pred ---CH------HHHHHHHHhhcccCcEEEEEecC
Q 021661 223 ---KP------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 223 ---d~------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|| .+.+.++.++|||||.|++.+|-
T Consensus 80 RYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPv 113 (177)
T PF03269_consen 80 RYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPV 113 (177)
T ss_pred ccCCCCCccccHHHHHHHHHhhccCCeEEEEeec
Confidence 22 57899999999999999999885
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.012 Score=55.18 Aligned_cols=105 Identities=18% Similarity=0.117 Sum_probs=67.1
Q ss_pred HHHHHHHhhCCC-----CCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHh-hCCCCCcEEEecCCCCCCCCCC
Q 021661 133 ALTKYYSEVFPP-----SNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 133 ~l~~~~~~~l~~-----~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~-~a~~~i~~~~~D~~~~~~lp~~ 205 (309)
++.+.+....+. ...++.++|||||+.|... .....+.+|++||..+-.-. ....++...+.|.. ...| +
T Consensus 191 KLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~f--r~~p-~ 267 (357)
T PRK11760 191 KLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGF--KFRP-P 267 (357)
T ss_pred HHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCc--ccCC-C
Confidence 555555444321 2356899999999877543 22233669999996652211 12234777777762 3333 2
Q ss_pred CCceeEEEeccchhccCCHHHHHHHHHhhcccC--cEEEEE
Q 021661 206 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPG--GLAIVS 244 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpG--G~lii~ 244 (309)
.+.+|+|+|-.+ ..|..+++-|.+.|..| ..+|+.
T Consensus 268 ~~~vDwvVcDmv----e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 268 RKNVDWLVCDMV----EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred CCCCCEEEEecc----cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 567999999654 47889999999999877 245554
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.00072 Score=59.09 Aligned_cols=95 Identities=20% Similarity=0.098 Sum_probs=52.8
Q ss_pred CCCCeEEEECCCcchhccC---CCCCCeEEEEeCCHHHHhhCCC-----------------CCcEEEecCCCCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPP---GYKQDRIVGMGMNEEELKRNPV-----------------LTEYVVQDLNLNPKLPFED 206 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~---~~~~~~v~giD~S~~~l~~a~~-----------------~i~~~~~D~~~~~~lp~~~ 206 (309)
.++..++|||||.|..... ..+..+.+||++.+...+.|+. .+++.++|. .+.++..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf---l~~~~~~ 117 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF---LDPDFVK 117 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T---TTHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc---cccHhHh
Confidence 5588999999999965432 2344569999999886654432 156667776 3322110
Q ss_pred ---CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 207 ---NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 207 ---~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..-|+|++++..- -++....|.++..-||+|-.+ |++.
T Consensus 118 ~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~I-Is~~ 158 (205)
T PF08123_consen 118 DIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARI-ISTK 158 (205)
T ss_dssp HHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EE-EESS
T ss_pred hhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEE-EECC
Confidence 2358999987532 234567778888889887665 4543
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.004 Score=56.05 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=49.0
Q ss_pred CCCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 146 NTPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.+++..|||||.|+|...... ..+.+|+++++.+.|+....+ +.+.+++|. -..++ -.||.++++
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~---lK~d~--P~fd~cVsN 130 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF---LKTDL--PRFDGCVSN 130 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc---ccCCC--cccceeecc
Confidence 467899999999999654332 346799999999999986443 278899998 44443 359999985
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0046 Score=58.57 Aligned_cols=67 Identities=18% Similarity=0.229 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecC
Q 021661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDL 196 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~ 196 (309)
.......+.+...+.++. . +.+|||+-||.|.. +..+....+|+|+|+++++++.|+++ ++|+.+++
T Consensus 178 N~~~~~~l~~~~~~~l~~--~-~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDL--S-KGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT----TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cHHHHHHHHHHHHHHhhc--C-CCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 344556777777787774 2 33899999998854 34445567999999999999988763 78888776
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0059 Score=59.46 Aligned_cols=113 Identities=16% Similarity=0.192 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCC
Q 021661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLN 199 (309)
Q Consensus 129 ~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~ 199 (309)
...+.+...+.+++.. ..+..+||++||+|. .+..+.+..+|+|+++++..++-|+.+ ++|+++-+
T Consensus 366 ~~aevLys~i~e~~~l--~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa--- 440 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGL--PADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQA--- 440 (534)
T ss_pred HHHHHHHHHHHHHhCC--CCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecch---
Confidence 3445566666666653 456899999999995 456667788999999999999988764 78999955
Q ss_pred CCC-C----CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 200 PKL-P----FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 200 ~~l-p----~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+++ + ...++=++|....-=. .-=..++++.+.+.-++--+++++...
T Consensus 441 E~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~ 492 (534)
T KOG2187|consen 441 EDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNP 492 (534)
T ss_pred hhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCH
Confidence 332 1 1111233222211000 000135666666665566666666443
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0049 Score=53.88 Aligned_cols=67 Identities=9% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCeEEEECCC-cchhccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCC-CCCCCCCCCceeEEEec
Q 021661 149 GVSILDLCSS-WVSHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNL-NPKLPFEDNSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG-~g~~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~-~~~lp~~~~sfDlVis~ 215 (309)
...|+|.-|| .|.....+..+..|++||+++.-+..|+.| ++|+++|.-+ ...+.+....+|+|+.+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 5688888665 345555556688999999999999988876 7899999811 12234444557787765
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.019 Score=46.91 Aligned_cols=88 Identities=14% Similarity=0.221 Sum_probs=50.4
Q ss_pred CCCCeEEEECCCcchh---ccC----CCCCCeEEEEeCCHHHHhhCCCC-----------CcEEEecCCCCCCCCCCCCc
Q 021661 147 TPGVSILDLCSSWVSH---FPP----GYKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNPKLPFEDNS 208 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~----~~~~~~v~giD~S~~~l~~a~~~-----------i~~~~~D~~~~~~lp~~~~s 208 (309)
.+...|+|+|||.|.. +.. ..+..+|+|+|.++..++.+.++ ..+.+++. ...+ ..+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI---ADES-SSDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch---hhhc-ccCC
Confidence 4578999999997722 222 13678999999999988765543 34444443 2221 1345
Q ss_pred eeEEEeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 209 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 209 fDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.++++.-++=--+. ..+|+...+ |+-.+++
T Consensus 100 ~~~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~ 129 (141)
T PF13679_consen 100 PDILVGLHACGDLS--DRALRLFIR---PNARFLV 129 (141)
T ss_pred CeEEEEeecccchH--HHHHHHHHH---cCCCEEE
Confidence 67777644333222 244444444 4444443
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.017 Score=54.97 Aligned_cols=98 Identities=24% Similarity=0.275 Sum_probs=64.8
Q ss_pred CCCCCeEEEECCCcc---hhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC---CCCCcee
Q 021661 146 NTPGVSILDLCSSWV---SHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP---FEDNSFD 210 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g---~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp---~~~~sfD 210 (309)
..++.+|||+|+-.| .++ ......+.|++.|.+..-+...+.+ ......|. ..+| ++. +||
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~---~ef~~~~~~~-~fD 314 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDG---REFPEKEFPG-SFD 314 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCc---ccccccccCc-ccc
Confidence 467899999988432 333 3344567999999998877655443 33344444 3333 333 899
Q ss_pred EEE----ecc--chhcc----------------CCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 211 VIT----NVV--SVDYL----------------TKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 211 lVi----s~~--vl~~l----------------~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.|+ |+. ++..- .=.++.|..+...+|+||+|+.++..
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 999 333 33221 11257888999999999999999775
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.018 Score=50.17 Aligned_cols=130 Identities=10% Similarity=0.100 Sum_probs=59.4
Q ss_pred CCeEEEECCCcc-hh------ccCCCCCCeEEEEeCCHHHH-----hh--CCCCCcEEEecCCCCCCC---C-C-CCCce
Q 021661 149 GVSILDLCSSWV-SH------FPPGYKQDRIVGMGMNEEEL-----KR--NPVLTEYVVQDLNLNPKL---P-F-EDNSF 209 (309)
Q Consensus 149 ~~~ILDiGcG~g-~~------~~~~~~~~~v~giD~S~~~l-----~~--a~~~i~~~~~D~~~~~~l---p-~-~~~sf 209 (309)
+..|+|+|.=.| +. +....+.++|+|+|+..+.. +. ...+++++++|....+.+ . . .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 579999998433 21 22334678999999954332 22 114599999998332111 1 1 11223
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHH---hhhhhcCCCCchhHhHHHHHHHhCCCC
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKA---ISIWTSTGDADHVMIVGAYFHYAGGYE 281 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~---~~~w~~~~~~~h~~~~~~~f~~~~Gf~ 281 (309)
.+|+ -.+-|.-.+..+.|+....+++||+++|++......+... -..|.. .......+.+|++....|+
T Consensus 113 vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w~~--g~~p~~av~~fL~~~~~f~ 184 (206)
T PF04989_consen 113 VLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPWGP--GNNPKTAVKEFLAEHPDFE 184 (206)
T ss_dssp EEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS---------------HHHHHHHHHTTTTEE
T ss_pred eEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccccchhh--hhHHHHHHHHHHHHCCCcE
Confidence 3333 3333444566788889999999999999986543222221 123332 1223556677777544343
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.029 Score=48.26 Aligned_cols=97 Identities=18% Similarity=0.193 Sum_probs=56.4
Q ss_pred CCCCCeEEEECCCcc----hhccCCCCCCeEEEEeCCHHHH----------hhCC----CCCcEEEecCCCCCCCCCCCC
Q 021661 146 NTPGVSILDLCSSWV----SHFPPGYKQDRIVGMGMNEEEL----------KRNP----VLTEYVVQDLNLNPKLPFEDN 207 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g----~~~~~~~~~~~v~giD~S~~~l----------~~a~----~~i~~~~~D~~~~~~lp~~~~ 207 (309)
.+++++|+|+=.|.| .+.....+.+.|++.=..+... ..++ .|.+.+-.+. ..++ +.+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~---~A~~-~pq 121 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL---VALG-APQ 121 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc---cccC-CCC
Confidence 366999999944433 2333445667888776554311 1111 1244444444 3444 344
Q ss_pred ceeEEEeccchhc-------cCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 208 SFDVITNVVSVDY-------LTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 208 sfDlVis~~vl~~-------l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..|++..+..-|- -....++..++++.|||||.++++..
T Consensus 122 ~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 122 KLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred cccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence 5677765432221 12457899999999999997776644
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.022 Score=48.76 Aligned_cols=90 Identities=17% Similarity=0.128 Sum_probs=64.7
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
...+.|+|+|+|... ..+....+|++++.+|.--+.|++| ++.+.+|+ ....+ +.-|+|+|-..=.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA---~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDA---RDYDF--ENADVVICEMLDT 107 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccc---ccccc--cccceeHHHHhhH
Confidence 368999999999543 2333356999999999998888876 67788998 66655 4479998753211
Q ss_pred cc--CCHHHHHHHHHhhcccCcEEEE
Q 021661 220 YL--TKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 220 ~l--~d~~~~l~~i~rvLkpGG~lii 243 (309)
.+ .....+++.+...||-+|.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 11 2345788888888999987653
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.35 Score=43.12 Aligned_cols=156 Identities=14% Similarity=0.088 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHhhCCC-CCCCCCeEEEECCCcchhccC----CCCCCeEEEEeCCHH----HHhhCCCC--CcEEEec
Q 021661 127 DDPAIAALTKYYSEVFPP-SNTPGVSILDLCSSWVSHFPP----GYKQDRIVGMGMNEE----ELKRNPVL--TEYVVQD 195 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~-~~~~~~~ILDiGcG~g~~~~~----~~~~~~v~giD~S~~----~l~~a~~~--i~~~~~D 195 (309)
.+....+|+.-+.--+.. ...++.+||=+|++.|..... .-|.+-|+++++|+. .+..|+++ +--+.-|
T Consensus 134 WnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiED 213 (317)
T KOG1596|consen 134 WNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIED 213 (317)
T ss_pred eChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeecc
Confidence 344455555444322211 145689999999987755433 246778999999974 45566654 5556667
Q ss_pred CCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH
Q 021661 196 LNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH 275 (309)
Q Consensus 196 ~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~ 275 (309)
+.-+......-.-.|+|++--. +-.....+.-++...||+||.++|+.-..+.-..... .+-+..-.+.+
T Consensus 214 ArhP~KYRmlVgmVDvIFaDva--qpdq~RivaLNA~~FLk~gGhfvisikancidstv~a-------e~vFa~Ev~kl- 283 (317)
T KOG1596|consen 214 ARHPAKYRMLVGMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFA-------EAVFAAEVKKL- 283 (317)
T ss_pred CCCchheeeeeeeEEEEeccCC--CchhhhhhhhhhhhhhccCCeEEEEEecccccccccH-------HHHHHHHHHHH-
Confidence 6211111111234677666421 1112234566788899999999998764432111100 00011111123
Q ss_pred HhCCCCCCceeeccCCC
Q 021661 276 YAGGYEPPQAVDISPNP 292 (309)
Q Consensus 276 ~~~Gf~~~~~~~~~~~~ 292 (309)
.+.-+++.+.+.+.|-.
T Consensus 284 qee~lkP~EqvtLEP~e 300 (317)
T KOG1596|consen 284 QEEQLKPKEQVTLEPFE 300 (317)
T ss_pred HHhccCchheecccccc
Confidence 33558888877776643
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.036 Score=51.04 Aligned_cols=110 Identities=16% Similarity=0.156 Sum_probs=67.2
Q ss_pred HHHHHHHhhCCCCC--CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHh-------hCCCC--------------
Q 021661 133 ALTKYYSEVFPPSN--TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELK-------RNPVL-------------- 188 (309)
Q Consensus 133 ~l~~~~~~~l~~~~--~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~-------~a~~~-------------- 188 (309)
.+.+.+..++|+.. ....+||=-|||.|+.. ..+..+-.+-|-++|--|+= ..+..
T Consensus 133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn 212 (369)
T KOG2798|consen 133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN 212 (369)
T ss_pred hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence 44555666666532 33567777799988654 34444556667788877652 11110
Q ss_pred -------------------------CcE--EEecCCCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEE
Q 021661 189 -------------------------TEY--VVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLA 241 (309)
Q Consensus 189 -------------------------i~~--~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~l 241 (309)
-.| -.+|.-.-...+-..++||+|+.++-|+--.+.-+.|..|..+|||||..
T Consensus 213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvW 292 (369)
T KOG2798|consen 213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVW 292 (369)
T ss_pred ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEE
Confidence 001 11222100011112347999999988888888899999999999999965
Q ss_pred E
Q 021661 242 I 242 (309)
Q Consensus 242 i 242 (309)
+
T Consensus 293 i 293 (369)
T KOG2798|consen 293 I 293 (369)
T ss_pred E
Confidence 4
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.0053 Score=47.34 Aligned_cols=89 Identities=13% Similarity=0.170 Sum_probs=40.6
Q ss_pred EEECCCcch---hccCCC-CC--CeEEEEeCCH---HHHhhCC-----CCCcEEEecCCCCCCCC-CCCCceeEEEeccc
Q 021661 153 LDLCSSWVS---HFPPGY-KQ--DRIVGMGMNE---EELKRNP-----VLTEYVVQDLNLNPKLP-FEDNSFDVITNVVS 217 (309)
Q Consensus 153 LDiGcG~g~---~~~~~~-~~--~~v~giD~S~---~~l~~a~-----~~i~~~~~D~~~~~~lp-~~~~sfDlVis~~v 217 (309)
||||+..|. .+.... +. .+++++|..+ ..-+..+ .+++++++|.. +.++ ++.+++|+|+.-..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSP--DFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-TH--HHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcH--HHHHHcCCCCEEEEEECCC
Confidence 689965442 222222 23 3799999999 3333333 24788888872 1222 33578999997651
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
|..+.....++.+.+.|+|||.+++.
T Consensus 79 -H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 79 -HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 21234567889999999999999875
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.044 Score=47.89 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=55.7
Q ss_pred CCCCeEEEECCCcchhc-----cCCCCCCeEEEEeCCHHHHhhCCCC---------------------------------
Q 021661 147 TPGVSILDLCSSWVSHF-----PPGYKQDRIVGMGMNEEELKRNPVL--------------------------------- 188 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-----~~~~~~~~v~giD~S~~~l~~a~~~--------------------------------- 188 (309)
..+.++-|-|||.|-.+ .....-..|+|.|+++++|+.|++|
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~ 129 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE 129 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 34679999999988322 2222234899999999999988764
Q ss_pred -----------------CcEEEecCCCCC---CCCCCCCceeEEEeccc----hhccC----C-HHHHHHHHHhhcccCc
Q 021661 189 -----------------TEYVVQDLNLNP---KLPFEDNSFDVITNVVS----VDYLT----K-PIEVFKEMCQVLKPGG 239 (309)
Q Consensus 189 -----------------i~~~~~D~~~~~---~lp~~~~sfDlVis~~v----l~~l~----d-~~~~l~~i~rvLkpGG 239 (309)
....+.|++... .++. ....|+|+.-.- -+|-. + ...+|+.++.+|-++.
T Consensus 130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~-~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~s 208 (246)
T PF11599_consen 130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDA-GFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERS 208 (246)
T ss_dssp HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHT-T---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-
T ss_pred HHHHHHHHHHhcCCCCchhheeecccCCchhhhhcc-CCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCc
Confidence 246777773110 0222 223699997532 23322 1 2579999999994445
Q ss_pred EEEEEecCc
Q 021661 240 LAIVSFSNR 248 (309)
Q Consensus 240 ~lii~~~~~ 248 (309)
.++++.-.+
T Consensus 209 VV~v~~k~~ 217 (246)
T PF11599_consen 209 VVAVSDKGR 217 (246)
T ss_dssp EEEEEESSS
T ss_pred EEEEecCCc
Confidence 677754433
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.054 Score=48.61 Aligned_cols=99 Identities=13% Similarity=0.031 Sum_probs=64.7
Q ss_pred CCeEEEECCCcch--hccCCCCCCeEEEEeCCHHHHhh--CCC-----------CCcEEEecCCCCCCCCCCCCc-eeEE
Q 021661 149 GVSILDLCSSWVS--HFPPGYKQDRIVGMGMNEEELKR--NPV-----------LTEYVVQDLNLNPKLPFEDNS-FDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~--~~~~~~~~~~v~giD~S~~~l~~--a~~-----------~i~~~~~D~~~~~~lp~~~~s-fDlV 212 (309)
..+|||+|+|+|. .+.....+.+|+..|+...+... ... .+.....+........+-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 5689999888773 33334457789999887654332 111 123333333211111111223 9999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+++.++.+...++.++.-++..|-.+|.+++...-
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 99999999999999999999999999977666554
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.078 Score=43.39 Aligned_cols=70 Identities=19% Similarity=0.439 Sum_probs=45.4
Q ss_pred eEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC--CCCCceeEEEeccchhccC--------CH---HHHH
Q 021661 171 RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP--FEDNSFDVITNVVSVDYLT--------KP---IEVF 228 (309)
Q Consensus 171 ~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp--~~~~sfDlVis~~vl~~l~--------d~---~~~l 228 (309)
+|+|+|+-+++++..+++ ++++..+= +++. .+.+++|+|+.+. -++| .+ ..++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH---e~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH---ENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G---GGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH---HHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHH
Confidence 589999999999876542 66666554 4443 2335799998874 3332 22 4789
Q ss_pred HHHHhhcccCcEEEEEe
Q 021661 229 KEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 229 ~~i~rvLkpGG~lii~~ 245 (309)
+.+.++|+|||.++|..
T Consensus 76 ~~al~lL~~gG~i~iv~ 92 (140)
T PF06962_consen 76 EAALELLKPGGIITIVV 92 (140)
T ss_dssp HHHHHHEEEEEEEEEEE
T ss_pred HHHHHhhccCCEEEEEE
Confidence 99999999999886653
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.2 Score=45.33 Aligned_cols=119 Identities=9% Similarity=0.110 Sum_probs=69.5
Q ss_pred CCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCC---CceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFED---NSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~---~sfDlVis~~v 217 (309)
++..|||||+|.|...... ....+++++|+++.+.+..++ +++++.+|+ ..+.... +....|+++.-
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~---l~~~~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDF---LKWDLYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-T---TTSCGGGHCSSSEEEEEEEET
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecch---hccccHHhhcCCceEEEEEec
Confidence 5889999999988543222 223799999999998875443 588999999 6666444 44567777643
Q ss_pred hhccCCHHHHHHHHHhhcccCc-EEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHH
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYF 274 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG-~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f 274 (309)
. + --..++.++...-+.|= .+++. .+.....+...... ...+..+....+++
T Consensus 107 y-~--is~~il~~ll~~~~~g~~~~~l~-vq~e~a~rl~a~pg-~~~~~~lsv~~q~~ 159 (262)
T PF00398_consen 107 Y-N--ISSPILRKLLELYRFGRVRMVLM-VQKEVAERLLAKPG-SKRYSRLSVLAQAF 159 (262)
T ss_dssp G-T--GHHHHHHHHHHHGGGCEEEEEEE-EEHHHHHHHHTSTT-STTCSHHHHHHHHH
T ss_pred c-c--chHHHHHHHhhcccccccceEEE-EehhhhhhccCCCC-CCccchhhhhhhhh
Confidence 3 2 23456666666434432 22222 22333333333221 23566666666644
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.25 Score=47.21 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=33.4
Q ss_pred CCCCceeEEEeccchhccCCH--------------------------------------HHHHHHHHhhcccCcEEEEEe
Q 021661 204 FEDNSFDVITNVVSVDYLTKP--------------------------------------IEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~--------------------------------------~~~l~~i~rvLkpGG~lii~~ 245 (309)
+|.++.++++++.++||+... ..+|+-=.+-|.|||.+++.+
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 688999999999999998531 122333345688999999987
Q ss_pred cCc
Q 021661 246 SNR 248 (309)
Q Consensus 246 ~~~ 248 (309)
..+
T Consensus 238 ~Gr 240 (386)
T PLN02668 238 LGR 240 (386)
T ss_pred ecC
Confidence 653
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.08 Score=49.53 Aligned_cols=105 Identities=13% Similarity=0.073 Sum_probs=57.0
Q ss_pred CCCCeEEEECCCcchhccC---CCCCC-eEEEEeCCHHHHhhCC---CC-----CcEEEecCCCC-CCCCCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHFPP---GYKQD-RIVGMGMNEEELKRNP---VL-----TEYVVQDLNLN-PKLPFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~---~~~~~-~v~giD~S~~~l~~a~---~~-----i~~~~~D~~~~-~~lp~~~~sfDlVi 213 (309)
..+++|||+|.|.|..+.. ..|.. .++-++.|+..-++.. ++ ..+-..|.... ..+|.. ..|++|+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a-d~ytl~i 190 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA-DLYTLAI 190 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc-ceeehhh
Confidence 4567899999986643332 23433 5677777776544321 12 22222332110 233322 3466666
Q ss_pred eccchhccCC---HHHHHHHHHhhcccCcEEEE-EecCcchhH
Q 021661 214 NVVSVDYLTK---PIEVFKEMCQVLKPGGLAIV-SFSNRCFWT 252 (309)
Q Consensus 214 s~~vl~~l~d---~~~~l~~i~rvLkpGG~lii-~~~~~~~~~ 252 (309)
..+-|-+... ....++.+..++.|||.|+| +-.++.-|.
T Consensus 191 ~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~ 233 (484)
T COG5459 191 VLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFE 233 (484)
T ss_pred hhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCchhHH
Confidence 5554433322 23588999999999997655 444454443
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.18 Score=43.23 Aligned_cols=93 Identities=14% Similarity=0.137 Sum_probs=57.3
Q ss_pred CCCCeEEEECCCcchhc----cCCCCCCeEEEEeCCHHHHhhCCCCCcEEEe-cCCCC-------CCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF----PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQ-DLNLN-------PKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~----~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~-D~~~~-------~~lp~~~~sfDlVis 214 (309)
.++.+|||+||-.|+.. ....|.+.|.|+|+-.-. ..+-+.++++ |+... +. +++...|+|++
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~---p~~Ga~~i~~~dvtdp~~~~ki~e~--lp~r~VdvVlS 142 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE---PPEGATIIQGNDVTDPETYRKIFEA--LPNRPVDVVLS 142 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc---CCCCcccccccccCCHHHHHHHHHh--CCCCcccEEEe
Confidence 55899999999766432 344589999999985431 2222556665 66321 12 35678999998
Q ss_pred ccchhc----cCCH-------HHHHHHHHhhcccCcEEEEE
Q 021661 215 VVSVDY----LTKP-------IEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 215 ~~vl~~----l~d~-------~~~l~~i~rvLkpGG~lii~ 244 (309)
-..=.. +.|. ..++--....++|+|.++.-
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 532111 1122 23444455678899988774
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.3 Score=44.88 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=29.4
Q ss_pred CCCCeEEEECCCcc---hhccCCC-CCCeEEEEeCCHHHHhhCCC
Q 021661 147 TPGVSILDLCSSWV---SHFPPGY-KQDRIVGMGMNEEELKRNPV 187 (309)
Q Consensus 147 ~~~~~ILDiGcG~g---~~~~~~~-~~~~v~giD~S~~~l~~a~~ 187 (309)
.++...+|.--|.| ..++... +.++++|+|-.+.+++.|++
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~ 66 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKE 66 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHH
Confidence 55789999844433 3334444 45689999999999998776
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.11 Score=45.09 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=27.4
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhh
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKR 184 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~ 184 (309)
+...+.|||||.|.++ ...+|..-+.|++|-...-+.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdY 99 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDY 99 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHH
Confidence 3578999999977544 345677889999997665543
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.022 Score=46.16 Aligned_cols=46 Identities=7% Similarity=0.057 Sum_probs=32.9
Q ss_pred eEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecC
Q 021661 151 SILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDL 196 (309)
Q Consensus 151 ~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~ 196 (309)
.+||||||.|.. +....+..+|+++|+++.+.+.++++ +.++...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 489999998843 33345566899999999998865543 45555555
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.15 Score=50.70 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=64.3
Q ss_pred CCCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCC--------CCC----------C
Q 021661 147 TPGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNP--------KLP----------F 204 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~--------~lp----------~ 204 (309)
.++.+|+=+||| .|... ....-+++|+++|.+++-++++++. .++...|..... .+. +
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 468999999999 33221 1122356899999999999988875 454444431100 000 0
Q ss_pred CC--CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEE-EEe
Q 021661 205 ED--NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI-VSF 245 (309)
Q Consensus 205 ~~--~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~li-i~~ 245 (309)
.+ ..+|+||.......-+.|..+.+++.+.+||||.++ +..
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 11 359999988766544456555699999999999764 444
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.049 Score=50.26 Aligned_cols=73 Identities=14% Similarity=0.046 Sum_probs=36.9
Q ss_pred CCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCC--CCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLN--LNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~--~~~~lp~~~~sfDlVi 213 (309)
..++||||+|....++ ....+.+++|+|+++..++.|+++ |+++...-. ....+..+.+.||+.+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 5799999999553221 122478999999999999987653 555544321 1122223446899999
Q ss_pred eccchhcc
Q 021661 214 NVVSVDYL 221 (309)
Q Consensus 214 s~~vl~~l 221 (309)
|+--++.-
T Consensus 183 CNPPFy~s 190 (299)
T PF05971_consen 183 CNPPFYSS 190 (299)
T ss_dssp E-----SS
T ss_pred cCCccccC
Confidence 98766543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.048 Score=49.54 Aligned_cols=94 Identities=16% Similarity=0.049 Sum_probs=55.0
Q ss_pred CCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC---C---------------cEEEe---cCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL---T---------------EYVVQ---DLNLNPKLP 203 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~---i---------------~~~~~---D~~~~~~lp 203 (309)
..+.+|||+|||.+.--..+ .....++..|+|.+.++.-.-. + ..... |. ..+-
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg---~~~~ 191 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDG---VFNH 191 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccc---hhhh
Confidence 34789999999977432222 2236899999999887522110 0 11111 11 0000
Q ss_pred CCCCceeEEEeccchhccCCHHHH-HHHHHhhcccCcEEEE
Q 021661 204 FEDNSFDVITNVVSVDYLTKPIEV-FKEMCQVLKPGGLAIV 243 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~~~~-l~~i~rvLkpGG~lii 243 (309)
.....||+|.++..+......... .......++++|.+.+
T Consensus 192 t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 192 TERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred ccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 011268888888877766665555 6666777788886654
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.15 Score=47.80 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=59.7
Q ss_pred CCCCCeEEEECCC-cch---hccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 146 NTPGVSILDLCSS-WVS---HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
..++.+|+=+|+| .|. .++.+. +.+|+++|.|++-++.|++.-.-...+.......+.-.+.||+|+..-.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~---- 238 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG---- 238 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence 4668999999998 222 223323 5899999999999988887622222221100222211234999988654
Q ss_pred CCHHHHHHHHHhhcccCcEEEE-Eec
Q 021661 222 TKPIEVFKEMCQVLKPGGLAIV-SFS 246 (309)
Q Consensus 222 ~d~~~~l~~i~rvLkpGG~lii-~~~ 246 (309)
...+....+.||+||.+++ ..+
T Consensus 239 ---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hhhHHHHHHHHhcCCEEEEECCC
Confidence 4678889999999997655 344
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.23 Score=44.00 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC---CCCCeEEEEeCCHHHHhhCCCC----------CcEE-Eec
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG---YKQDRIVGMGMNEEELKRNPVL----------TEYV-VQD 195 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~---~~~~~v~giD~S~~~l~~a~~~----------i~~~-~~D 195 (309)
.+..+.+++.+.-...+.++.++||||.|-.-.++.. ..+.+.+|.|+++..++.|+.. ++.. +.|
T Consensus 60 Yih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~ 139 (292)
T COG3129 60 YIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKD 139 (292)
T ss_pred HHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccC
Confidence 4456777777665555567889999999966444433 2367999999999998877642 3332 222
Q ss_pred CCC-CCCCCCCCCceeEEEeccchhc
Q 021661 196 LNL-NPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 196 ~~~-~~~lp~~~~sfDlVis~~vl~~ 220 (309)
-.- ...+--..+.||+++|+--+|.
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred ccccccccccccceeeeEecCCCcch
Confidence 200 0111112567999999987764
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.17 Score=44.22 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=52.7
Q ss_pred EEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 152 ILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 152 ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
|.||||--| ..+.......+++++|+++.-++.|+++ +++..+|.- ..++. .+..|.|+.+.+=-
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL--~~l~~-~e~~d~ivIAGMGG 77 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGL--EVLKP-GEDVDTIVIAGMGG 77 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGG--GG--G-GG---EEEEEEE-H
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcc--cccCC-CCCCCEEEEecCCH
Confidence 689999655 3344444455899999999999987763 788888851 33432 22378888765432
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+ ..++|++....++..-.|++.
T Consensus 78 ~l--I~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 78 EL--IIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp HH--HHHHHHHTGGGGTT--EEEEE
T ss_pred HH--HHHHHHhhHHHhccCCeEEEe
Confidence 21 456777777777766677775
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.24 Score=46.72 Aligned_cols=102 Identities=18% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCCCCeEEEECCCcch----hccCCC---CCCeEEEEeCCHHHHhh----CCC----CCcEEEecCCCCCCC------CC
Q 021661 146 NTPGVSILDLCSSWVS----HFPPGY---KQDRIVGMGMNEEELKR----NPV----LTEYVVQDLNLNPKL------PF 204 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~----~~~~~~---~~~~v~giD~S~~~l~~----a~~----~i~~~~~D~~~~~~l------p~ 204 (309)
..++.+|||+|+-.|. .+.... ..+.|++-|.+..-+.. .+. ++.....|+....+. +.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~ 232 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDK 232 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchh
Confidence 5679999999886442 222222 14589999999864432 211 133334444111111 22
Q ss_pred CCCceeEEEec------cchhccCCH-----------------HHHHHHHHhhcccCcEEEEEecC
Q 021661 205 EDNSFDVITNV------VSVDYLTKP-----------------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 205 ~~~sfDlVis~------~vl~~l~d~-----------------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+...||-|++- .++.+-++. ..+|.+-.++||+||.++-++..
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 34569999852 123322211 36788999999999999999875
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.39 Score=47.29 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=69.8
Q ss_pred HHHHHHHhhCCCCCCC-CCeEEEECCCcchh-------ccCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecC
Q 021661 133 ALTKYYSEVFPPSNTP-GVSILDLCSSWVSH-------FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDL 196 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~-~~~ILDiGcG~g~~-------~~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~ 196 (309)
.+.+.+....+....+ ...|+=+|+|-|-. ........++++++-+|+++..... +++.+..|+
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM 430 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM 430 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc
Confidence 4444455554432222 33455559996622 1222346689999999987764332 388999999
Q ss_pred CCCCCCCCCCCceeEEEeccchhccCC---HHHHHHHHHhhcccCcEEEE
Q 021661 197 NLNPKLPFEDNSFDVITNVVSVDYLTK---PIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 197 ~~~~~lp~~~~sfDlVis~~vl~~l~d---~~~~l~~i~rvLkpGG~lii 243 (309)
..++.++++.|++++-. |--+.| -.+.|..+.+.|||+|..|=
T Consensus 431 ---R~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 431 ---RKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred ---cccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 78875568899998743 232322 26899999999999987653
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=92.24 E-value=1.6 Score=36.69 Aligned_cols=110 Identities=18% Similarity=0.171 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cC-CCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC--
Q 021661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PP-GYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP-- 203 (309)
Q Consensus 128 ~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~-~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp-- 203 (309)
+.....+.+.+.+... ...+|+=|||=+.-.. .. ..+..+++-.|+..+.-....+ .|+.-|.+....+|
T Consensus 9 ~~T~~~l~~~l~~~~~----~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~~--~F~fyD~~~p~~~~~~ 82 (162)
T PF10237_consen 9 DETAEFLARELLDGAL----DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGGD--EFVFYDYNEPEELPEE 82 (162)
T ss_pred HHHHHHHHHHHHHhcC----CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCCc--ceEECCCCChhhhhhh
Confidence 3444555555555433 2679999999755322 22 3457799999999988775543 58888886444554
Q ss_pred CCCCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEec
Q 021661 204 FEDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+ .++||+|++---+ +.+ ..+....+.-++|+++.+++.++
T Consensus 83 l-~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 83 L-KGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred c-CCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence 3 5789999986444 221 24566777777788888888765
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.24 Score=45.96 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=45.9
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCC-----CCCCceeE
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLP-----FEDNSFDV 211 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp-----~~~~sfDl 211 (309)
.++..++|.=+|.|.+ +....+.++|+|+|.++.+++.+++ ++.+++++. .+++ ...+++|.
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF---~~l~~~l~~~~~~~vDg 95 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNF---ANFFEHLDELLVTKIDG 95 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCH---HHHHHHHHhcCCCcccE
Confidence 4578999998887643 3333345899999999999987764 366777776 4432 12356888
Q ss_pred EEec
Q 021661 212 ITNV 215 (309)
Q Consensus 212 Vis~ 215 (309)
|+..
T Consensus 96 Il~D 99 (305)
T TIGR00006 96 ILVD 99 (305)
T ss_pred EEEe
Confidence 8854
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.36 Score=44.86 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=62.0
Q ss_pred CCCCCeEEEECCC-cc---hhccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCC--CCC------CCCCCceeEE
Q 021661 146 NTPGVSILDLCSS-WV---SHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN--PKL------PFEDNSFDVI 212 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~--~~l------p~~~~sfDlV 212 (309)
.+.+.+||=+|+| .| ...+++....+|+.+|+++.-|+.|++. .+.+.-+.... ..+ -+....+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 3558999999999 34 2345566677999999999999999984 12211111000 000 0223458888
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+.+..++ ..++.....+|+||.+++.-
T Consensus 247 ~dCsG~~------~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 247 FDCSGAE------VTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred EEccCch------HHHHHHHHHhccCCEEEEec
Confidence 8776554 66777788999999876653
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.85 Score=43.44 Aligned_cols=97 Identities=14% Similarity=0.120 Sum_probs=59.4
Q ss_pred CCCCeEEEECCCc-chh---ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCC-----C-CC-CCCceeEEEec
Q 021661 147 TPGVSILDLCSSW-VSH---FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPK-----L-PF-EDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~-g~~---~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~-----l-p~-~~~sfDlVis~ 215 (309)
.++.+||.+|||. |.. +.......+|+++|.++++++.+++.......+... .+ + .+ ....+|+|+-.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~-~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEE-VDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCc-chHHHHHHHHHcCCCCCCEEEEC
Confidence 4578999999984 432 223332346999999999998877641111222210 10 1 11 22369999875
Q ss_pred cc-----------hhc----cCCHHHHHHHHHhhcccCcEEEEE
Q 021661 216 VS-----------VDY----LTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 216 ~v-----------l~~----l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.. +.| ..+....+.++.+.|+|+|.+++-
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 32 111 245577899999999999977653
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.97 Score=44.81 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=69.8
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhccCCC-----C--CCeEEEEeCCHHHHhhCCCC-----Cc----EEEecCCC
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY-----K--QDRIVGMGMNEEELKRNPVL-----TE----YVVQDLNL 198 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~-----~--~~~v~giD~S~~~l~~a~~~-----i~----~~~~D~~~ 198 (309)
.+++.+.+.+ .+..+|.|-.||+|..+..+. . ...++|.|+++.+...++-+ ++ ...+|.-
T Consensus 175 ~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl- 251 (489)
T COG0286 175 SELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL- 251 (489)
T ss_pred HHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc-
Confidence 4555555554 346699999999886543221 1 36799999999998887764 32 2233321
Q ss_pred CCCCCC----CCCceeEEEeccch---hcc---------------------C-CHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 199 NPKLPF----EDNSFDVITNVVSV---DYL---------------------T-KPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 199 ~~~lp~----~~~sfDlVis~~vl---~~l---------------------~-d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
.+... ..+.||.|+++--+ .|. + ....+++.+...|+|||...|.+++..
T Consensus 252 -~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~gv 330 (489)
T COG0286 252 -SNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPDGV 330 (489)
T ss_pred -cCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecCCc
Confidence 11112 33679999986322 111 0 115799999999999997777666543
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.57 E-value=1.3 Score=39.82 Aligned_cols=96 Identities=15% Similarity=0.204 Sum_probs=60.8
Q ss_pred CCeEEEECCCcch---hccCC----CCCCeEEEEeCCHHHHhhCCC-----C----CcEEEecCCCC-CCCCCCCCcee-
Q 021661 149 GVSILDLCSSWVS---HFPPG----YKQDRIVGMGMNEEELKRNPV-----L----TEYVVQDLNLN-PKLPFEDNSFD- 210 (309)
Q Consensus 149 ~~~ILDiGcG~g~---~~~~~----~~~~~v~giD~S~~~l~~a~~-----~----i~~~~~D~~~~-~~lp~~~~sfD- 210 (309)
+..++|+|+|+.. .+..+ ..-.+++.+|+|+..++...+ . +.-+++|.... ..+| ..+--
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl 156 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELP--RGGRRL 156 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhccc--CCCeEE
Confidence 6799999999652 22222 223589999999998874221 1 44566666211 1222 22222
Q ss_pred EEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEec
Q 021661 211 VITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 211 lVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.++....|-.+. +-..+|.++...|+||-.+++.+.
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 333445777774 345799999999999998888753
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.2 Score=45.93 Aligned_cols=55 Identities=20% Similarity=0.190 Sum_probs=35.6
Q ss_pred CcEEEecCCCCCCC--CCCCCceeEEEeccc--h--h------------ccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 189 TEYVVQDLNLNPKL--PFEDNSFDVITNVVS--V--D------------YLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 i~~~~~D~~~~~~l--p~~~~sfDlVis~~v--l--~------------~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..++++|. .+. .+++++||+|++.-- + . ++.-....|.++.|+|||||.+++...
T Consensus 9 ~~i~~gD~---~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 9 KTIIHGDA---LTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CEEEeccH---HHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 45667776 332 245778899888421 1 0 111125789999999999998877533
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.22 Score=44.17 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=33.4
Q ss_pred cEEEecCCCCCCC--CCCCCceeEEEecc--ch--hc-----c--C---C-HHHHHHHHHhhcccCcEEEEE
Q 021661 190 EYVVQDLNLNPKL--PFEDNSFDVITNVV--SV--DY-----L--T---K-PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 190 ~~~~~D~~~~~~l--p~~~~sfDlVis~~--vl--~~-----l--~---d-~~~~l~~i~rvLkpGG~lii~ 244 (309)
+++.+|. .++ .++++++|+|+..- .+ .. + . + ...++.+++|+|||||.+++-
T Consensus 3 ~l~~gD~---le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNC---IDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechH---HHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4566666 332 46688888888751 11 10 0 0 1 257899999999999987653
|
|
| >PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences | Back alignment and domain information |
|---|
Probab=89.80 E-value=0.73 Score=49.77 Aligned_cols=98 Identities=11% Similarity=0.028 Sum_probs=61.8
Q ss_pred CCeEEEECCCcc-hhccCCCCCCeEEEEeCCHHHHhhCC--CCCcEEEecCCCCCCCC-CCCCceeEEEeccchhcc---
Q 021661 149 GVSILDLCSSWV-SHFPPGYKQDRIVGMGMNEEELKRNP--VLTEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYL--- 221 (309)
Q Consensus 149 ~~~ILDiGcG~g-~~~~~~~~~~~v~giD~S~~~l~~a~--~~i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l--- 221 (309)
+..+||+|.|-. +.+....+...|+.+|.-|-.--.+. ....|++.|. .... .....+|.+.|.+.|-.-
T Consensus 823 ~~~~lDLGTGPE~RiLsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DY---l~~~~~~~~~~D~vtailSLGAAaA~ 899 (1289)
T PF06016_consen 823 PDHWLDLGTGPECRILSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADY---LSDAWWNGTPFDAVTAILSLGAAAAS 899 (1289)
T ss_dssp C-CEEEET--TT-CHHHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-T---TSCCGGCC---SEEEECTCHHHHHHH
T ss_pred cceEEEccCCccceeeeccCCCCceEEEecCCcccccchhhhcceeeeecc---ccceeEecCCCCEEEEEeeehhhhhc
Confidence 679999999955 55566666789999998765322211 2378999998 3322 345679999999888764
Q ss_pred --CCHHHHHHHHHhhcccCc--EEEEEecCcc
Q 021661 222 --TKPIEVFKEMCQVLKPGG--LAIVSFSNRC 249 (309)
Q Consensus 222 --~d~~~~l~~i~rvLkpGG--~lii~~~~~~ 249 (309)
-+..+.++++.+.+++.| ++++.+..+.
T Consensus 900 a~~tl~~~l~~~l~~~~~~~~~~l~lQLNcPl 931 (1289)
T PF06016_consen 900 ANVTLDAGLQQFLSQCVQANVKRLWLQLNCPL 931 (1289)
T ss_dssp CT--HHHHHHHHHHHHHCTT-SEEEEE-B--S
T ss_pred CCCcHHHHHHHHHHHHHhCCccEEEEEecCCC
Confidence 367899999999999988 7888876543
|
The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=89.77 E-value=0.41 Score=47.50 Aligned_cols=96 Identities=13% Similarity=0.166 Sum_probs=63.4
Q ss_pred CCCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCC--------CC------------C
Q 021661 147 TPGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN--------PK------------L 202 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~--------~~------------l 202 (309)
.++.++|=+|+| .|... .....+..|+++|.+++-++.++.. .+++..|.... .. +
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~ 241 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF 241 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence 357899999999 33322 1122356899999999988887764 34444443100 00 1
Q ss_pred CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEE
Q 021661 203 PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~li 242 (309)
+-.-..+|+|+.+-.+.--+.|.-+.+++.+.+|||+.++
T Consensus 242 ~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV 281 (511)
T TIGR00561 242 AAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV 281 (511)
T ss_pred HHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence 1112459999888767666667778899999999998754
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.46 E-value=0.88 Score=35.84 Aligned_cols=85 Identities=16% Similarity=0.267 Sum_probs=53.0
Q ss_pred CCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHH
Q 021661 149 GVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 226 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~ 226 (309)
..+|.|||-|.-... .....+..|+++|+++. .+++-++++.-|++. .++..- ..-|+|.|. .-|.+
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~~g~~~v~DDitn-P~~~iY-~~A~lIYSi------RpppE 82 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAPEGLRFVVDDITN-PNISIY-EGADLIYSI------RPPPE 82 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCcccceEEEccCCC-ccHHHh-hCccceeec------CCCHH
Confidence 459999999943221 22234689999999998 677779999999943 233322 236888773 23445
Q ss_pred HHHHHHhhcccCc-EEEEE
Q 021661 227 VFKEMCQVLKPGG-LAIVS 244 (309)
Q Consensus 227 ~l~~i~rvLkpGG-~lii~ 244 (309)
....+.++-+.=| -++|.
T Consensus 83 l~~~ildva~aVga~l~I~ 101 (129)
T COG1255 83 LQSAILDVAKAVGAPLYIK 101 (129)
T ss_pred HHHHHHHHHHhhCCCEEEE
Confidence 5555555555434 44443
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.99 Score=42.64 Aligned_cols=90 Identities=16% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCC------CCCCC-CceeEEEec
Q 021661 149 GVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPK------LPFED-NSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~------lp~~~-~sfDlVis~ 215 (309)
+.+|+=+||| .|.. +.......+|+.+|.+++-++.|++. .+.+.... .+ +.... ..+|+|+=.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~---~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPS---EDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCc---cccHHHHHHHHhCCCCCCEEEEC
Confidence 4489999999 4432 33445567999999999999999873 22222221 11 01112 369999865
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEE-EEEecC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLA-IVSFSN 247 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~l-ii~~~~ 247 (309)
.. ...++.++.++++|||.+ ++.+..
T Consensus 246 ~G------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 246 VG------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred CC------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 54 235899999999999965 555554
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.09 E-value=0.33 Score=43.55 Aligned_cols=68 Identities=10% Similarity=-0.091 Sum_probs=44.5
Q ss_pred eEEEECCCcch-hccCCCCCCeEEEEeCCHHHHh-------hCC----------CCCcEEEecCCCCCCCCCCCCceeEE
Q 021661 151 SILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELK-------RNP----------VLTEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 151 ~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~-------~a~----------~~i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
+|||+-+|+|. .+..+..+++|+++|-|+.+.. .+. ++++++.+|.. .-|.-..++||+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~--~~L~~~~~~fDVV 168 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL--TALTDITPRPQVV 168 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH--HHHhhCCCCCcEE
Confidence 89999999884 3444445788999999986543 221 23666677762 2222223479999
Q ss_pred Eeccchhc
Q 021661 213 TNVVSVDY 220 (309)
Q Consensus 213 is~~vl~~ 220 (309)
+.--.+.|
T Consensus 169 YlDPMfp~ 176 (250)
T PRK10742 169 YLDPMFPH 176 (250)
T ss_pred EECCCCCC
Confidence 97666555
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.49 E-value=0.88 Score=42.48 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=54.2
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCC--CCCCCCCCceeEEEeccchh
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN--PKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~--~~lp~~~~sfDlVis~~vl~ 219 (309)
.++.+||=.||| .|.. +.......+|+++|.+++-++.+++. .+. ..|.... ..+....+.+|+|+-...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~-vi~~~~~~~~~~~~~~g~~D~vid~~G-- 244 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADK-LVNPQNDDLDHYKAEKGYFDVSFEVSG-- 244 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcE-EecCCcccHHHHhccCCCCCEEEECCC--
Confidence 357899989997 3322 22333223799999999998888764 222 1222100 111111235898876543
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEE
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
. ...+..+.+.|++||.+++
T Consensus 245 ---~-~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 245 ---H-PSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred ---C-HHHHHHHHHHhhcCCEEEE
Confidence 1 3467888899999997654
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.43 E-value=1.2 Score=39.29 Aligned_cols=91 Identities=18% Similarity=0.042 Sum_probs=56.2
Q ss_pred CCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 149 ~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
+.++.||||--+ ..+....+...+++.|+++.-++.|.++ ++..++|.. ..+. .++.+|+|+...
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl--~~l~-~~d~~d~ivIAG 93 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGL--AVLE-LEDEIDVIVIAG 93 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCc--cccC-ccCCcCEEEEeC
Confidence 667999999644 4556666778999999999988877653 444555541 2222 233699988765
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+=-. -...+|++-...|+.=-.+++.
T Consensus 94 MGG~--lI~~ILee~~~~l~~~~rlILQ 119 (226)
T COG2384 94 MGGT--LIREILEEGKEKLKGVERLILQ 119 (226)
T ss_pred CcHH--HHHHHHHHhhhhhcCcceEEEC
Confidence 3221 1345555555555533345553
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=87.25 E-value=1.5 Score=39.10 Aligned_cols=98 Identities=22% Similarity=0.137 Sum_probs=54.7
Q ss_pred CCCeEEEECCC--cchhccCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCC-CCceeEEEeccc
Q 021661 148 PGVSILDLCSS--WVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFE-DNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG--~g~~~~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~-~~sfDlVis~~v 217 (309)
.+.+||=||=. +...+.......+|+.+|+.+++++.-++ .++.++.|+. ..+|-+ .++||++++.-.
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR--~~LP~~~~~~fD~f~TDPP 121 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLR--DPLPEELRGKFDVFFTDPP 121 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TT--S---TTTSS-BSEEEE---
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEeccc--ccCCHHHhcCCCEEEeCCC
Confidence 48899999986 33333444556799999999999975332 2788899984 345522 478999998531
Q ss_pred hhccCCHHHHHHHHHhhcccCc-EEEEEecCc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNR 248 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG-~lii~~~~~ 248 (309)
.-+.-..-++......||..| ..++.+...
T Consensus 122 -yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 122 -YTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp -SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred -CCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 111233578888999999866 667776653
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.36 E-value=1.1 Score=43.68 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=57.9
Q ss_pred CCCCeEEEECCCcchhc---cCCCC--CCeEEEEeCCHHHHhhCCCC-------CcEEEec-CCCCCCCCCC-CCceeEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYK--QDRIVGMGMNEEELKRNPVL-------TEYVVQD-LNLNPKLPFE-DNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~--~~~v~giD~S~~~l~~a~~~-------i~~~~~D-~~~~~~lp~~-~~sfDlV 212 (309)
..+..++|+|.|.|... ....+ ...++.||.|..|+.....+ ...+... ......+|.+ .+.||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 44678999988755321 12222 34799999999998865432 1112222 1101234533 3459999
Q ss_pred EeccchhccCCHH---HHHHH-HHhhcccCcEEEE
Q 021661 213 TNVVSVDYLTKPI---EVFKE-MCQVLKPGGLAIV 243 (309)
Q Consensus 213 is~~vl~~l~d~~---~~l~~-i~rvLkpGG~lii 243 (309)
++.+.++++.+.. ...++ ..+..++||.+++
T Consensus 279 i~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi 313 (491)
T KOG2539|consen 279 ICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI 313 (491)
T ss_pred EeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence 9999999986542 33333 4456778886544
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.30 E-value=0.8 Score=40.60 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=56.0
Q ss_pred CCeEEEECCCcchh---cc-CC----CCC----CeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC-----CCCCCceeE
Q 021661 149 GVSILDLCSSWVSH---FP-PG----YKQ----DRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDV 211 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~-~~----~~~----~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l-----p~~~~sfDl 211 (309)
-.+++|+|+-.|+. +. .. ... ..|+++|+-+-.-- +-+--+++|+.....+ -|..+.-|+
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI---~GV~qlq~DIT~~stae~Ii~hfggekAdl 118 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI---EGVIQLQGDITSASTAEAIIEHFGGEKADL 118 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc---CceEEeecccCCHhHHHHHHHHhCCCCccE
Confidence 35899998854422 11 11 111 24999999643111 1256678888322111 145568899
Q ss_pred EEecc-----chhccCCH------HHHHHHHHhhcccCcEEEEE
Q 021661 212 ITNVV-----SVDYLTKP------IEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 212 Vis~~-----vl~~l~d~------~~~l~~i~rvLkpGG~lii~ 244 (309)
|+|-. .+|.+.+. ..+|.-...+|||||.++--
T Consensus 119 VvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 119 VVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred EEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 99964 45555432 35677788999999988754
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.06 E-value=1.7 Score=42.61 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=64.9
Q ss_pred CCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCC---CCCCC---------CCCCceeEEE
Q 021661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNL---NPKLP---------FEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~---~~~lp---------~~~~sfDlVi 213 (309)
+.++|=+|=|.| ..+....+...++++++.+.|++.|++...|.+.|.+. ...++ -++..||++.
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~ 375 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVLM 375 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEEE
Confidence 445555544433 45555677889999999999999999886666655210 01111 2456799988
Q ss_pred e----ccchhccCCH------HHHHHHHHhhcccCcEEEEEecC
Q 021661 214 N----VVSVDYLTKP------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 214 s----~~vl~~l~d~------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
. .. .+-+.-| ..+|..+..+|.|-|.++|-...
T Consensus 376 ~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 376 VDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred EECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 4 23 3333222 57889999999999999887543
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.38 E-value=1 Score=41.71 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=64.4
Q ss_pred CCCeEEEECCCc-chhc--cCCCCCCeEEEEeCCHHHHhhCCCC----CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 148 PGVSILDLCSSW-VSHF--PPGYKQDRIVGMGMNEEELKRNPVL----TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 148 ~~~~ILDiGcG~-g~~~--~~~~~~~~v~giD~S~~~l~~a~~~----i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
++.+|.=||.|. |... ....-+++|+-+|+|..-|++.... ++..-.+. .++...-.+.|+||..-.+--
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~---~~iee~v~~aDlvIgaVLIpg 243 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTP---SNIEEAVKKADLVIGAVLIPG 243 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCH---HHHHHHhhhccEEEEEEEecC
Confidence 346777888883 3222 2233478999999998887765542 44444444 344333356899999887777
Q ss_pred cCCHHHHHHHHHhhcccCcEEE
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~li 242 (309)
-..|.-+.+++.+.||||..++
T Consensus 244 akaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEE
Confidence 7889999999999999999653
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=85.33 E-value=1.3 Score=35.56 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=46.6
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchh--ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeE
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~--~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
+++++.+... ..+|+|||-|.-.. ..+...+..|+++|+.+. .++..+.++.-|+.. .++.+ -...|+
T Consensus 4 ~a~~ia~~~~-----~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~~g~~~v~DDif~-P~l~i-Y~~a~l 73 (127)
T PF03686_consen 4 FAEYIARLNN-----YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAPEGVNFVVDDIFN-PNLEI-YEGADL 73 (127)
T ss_dssp HHHHHHHHS------SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S-------STTEE---SSS---HHH-HTTEEE
T ss_pred HHHHHHHhCC-----CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccccCcceeeecccC-CCHHH-hcCCcE
Confidence 3455554443 45999999994422 222223579999999998 455569999999942 12221 135799
Q ss_pred EEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 212 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 212 Vis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
|.|.- --++....+-++.+.+ |.-++|.
T Consensus 74 IYSiR---PP~El~~~il~lA~~v--~adlii~ 101 (127)
T PF03686_consen 74 IYSIR---PPPELQPPILELAKKV--GADLIIR 101 (127)
T ss_dssp EEEES-----TTSHHHHHHHHHHH--T-EEEEE
T ss_pred EEEeC---CChHHhHHHHHHHHHh--CCCEEEE
Confidence 98843 2334455555555543 3445554
|
; PDB: 2K4M_A. |
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=85.19 E-value=7.6 Score=35.14 Aligned_cols=97 Identities=13% Similarity=0.137 Sum_probs=62.6
Q ss_pred CCeEEEECCCcchh-ccCCC-CCCeEEEEeCCHHHHh-------h----CCCCCcEEEecCCCCCCC-------CCCCCc
Q 021661 149 GVSILDLCSSWVSH-FPPGY-KQDRIVGMGMNEEELK-------R----NPVLTEYVVQDLNLNPKL-------PFEDNS 208 (309)
Q Consensus 149 ~~~ILDiGcG~g~~-~~~~~-~~~~v~giD~S~~~l~-------~----a~~~i~~~~~D~~~~~~l-------p~~~~s 208 (309)
...|+.+|||.-.. +.... ++.+++=+|.-+ +++ . ...+.+++..|+. ..+ .+..+.
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~-v~~~K~~~l~~~~~~~~~~~~~v~~Dl~--~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPA-VLAFKEKVLAELGAEPPAHRRAVPVDLR--QDWPAALAAAGFDPTA 158 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChH-HHHHHHHHHHHcCCCCCCceEEeccCch--hhHHHHHHhCCCCCCC
Confidence 34799999995432 22222 246777777754 332 1 1224677888873 111 122333
Q ss_pred eeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 209 FDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 209 fDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
--++++-.++.+++. ..++|+.+.+...||+.++++..++
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 457888889999964 4689999999888999999997654
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=84.85 E-value=0.56 Score=44.90 Aligned_cols=93 Identities=22% Similarity=0.208 Sum_probs=57.7
Q ss_pred CCeEEEECCCcc----hhccCCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 149 GVSILDLCSSWV----SHFPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g----~~~~~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
+.+|||.=+|+| +.........+|+.-|+|+++++..++| ++....|++. -+....+.||+|=.
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~--ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANV--LLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHH--HHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHH--HhhhccccCCEEEe
Confidence 569999955444 2222223346899999999998876554 4566677731 12124567999864
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+-.-.|..+|..+.+.+|.||+|.++-..
T Consensus 128 ----DPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 128 ----DPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp ------SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred ----CCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 34456789999999999999999998554
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.05 E-value=0.28 Score=43.63 Aligned_cols=69 Identities=19% Similarity=0.079 Sum_probs=36.2
Q ss_pred CeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHhh-------CC----------CCCcEEEecCCCCCCCCCCCCceeE
Q 021661 150 VSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELKR-------NP----------VLTEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 150 ~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~~-------a~----------~~i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
.+|||.-+|.|. .+..+.-+++|++++-|+-+-.. +. ++++++.+|.. +-|+.++++||+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~--~~L~~~~~s~DV 154 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDAL--EYLRQPDNSFDV 154 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CC--CHCCCHSS--SE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHH--HHHhhcCCCCCE
Confidence 499999999883 22222337799999999865321 11 13789999983 335666789999
Q ss_pred EEeccchhc
Q 021661 212 ITNVVSVDY 220 (309)
Q Consensus 212 Vis~~vl~~ 220 (309)
|+.--++.+
T Consensus 155 VY~DPMFp~ 163 (234)
T PF04445_consen 155 VYFDPMFPE 163 (234)
T ss_dssp EEE--S---
T ss_pred EEECCCCCC
Confidence 998777665
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=83.71 E-value=1.1 Score=34.99 Aligned_cols=32 Identities=9% Similarity=-0.162 Sum_probs=21.8
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCC
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMN 178 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S 178 (309)
.+....+|||||.|... .+...+..-.|+|.-
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 34678999999999543 233345566788764
|
; GO: 0008168 methyltransferase activity |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=83.55 E-value=2.6 Score=34.05 Aligned_cols=68 Identities=13% Similarity=-0.003 Sum_probs=41.9
Q ss_pred CCCCeEEEECCCcchh--ccCCCCCCeEEEEeCCHHHHhhCCCCCcE-EEecC-CCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPVLTEY-VVQDL-NLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~--~~~~~~~~~v~giD~S~~~l~~a~~~i~~-~~~D~-~~~~~lp~~~~sfDlVis 214 (309)
-.+.+|+|||++.|.. +........|+++++++...+..++++.+ ...|- ......+-.-+.||+.+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNGEYEDVDIFVM 98 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceeecccccccCCCcceEEE
Confidence 3478999999987733 33334445899999999999888776332 22221 000223334456887764
|
|
| >PF14740 DUF4471: Domain of unknown function (DUF4471) | Back alignment and domain information |
|---|
Probab=82.26 E-value=2.4 Score=39.00 Aligned_cols=36 Identities=31% Similarity=0.410 Sum_probs=27.0
Q ss_pred CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 207 NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 207 ~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+-||+|+.+...-|+-.|. +.++++|+|.|++++..
T Consensus 221 ~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaK 256 (289)
T PF14740_consen 221 NFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAK 256 (289)
T ss_pred CCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcch
Confidence 5699999776544443433 77899999999999874
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.72 E-value=1.9 Score=40.80 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=60.6
Q ss_pred CCeEEEECCCcch-h--ccCCCCCCeEEEEeCCHHHHhhCCCCC--------cEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVS-H--FPPGYKQDRIVGMGMNEEELKRNPVLT--------EYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~-~--~~~~~~~~~v~giD~S~~~l~~a~~~i--------~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
..+|||.=+|+|. . +....+..+|+.-|+|+++.+..++|+ ..+..|++. -+--....||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~--lm~~~~~~fd~ID---- 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANA--LLHELHRAFDVID---- 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHH--HHHhcCCCccEEe----
Confidence 5699999777662 2 222233448999999999999877652 233344421 1111124566663
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|+-+-.|..++..+.+.+|.||++.++-.
T Consensus 127 iDPFGSPaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 127 IDPFGSPAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred cCCCCCCchHHHHHHHHhhcCCEEEEEec
Confidence 23345678999999999999999999844
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=81.53 E-value=5.2 Score=36.60 Aligned_cols=90 Identities=22% Similarity=0.324 Sum_probs=55.6
Q ss_pred CCCCeEEEECCC-cchhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----CCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSS-WVSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p~~~~sfDlVis~~v 217 (309)
.++.+||..|+| .|... .....+.+|++++.+++..+.+++. ++.+..+-. ... ....+.+|+|+.+..
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~D~vid~~g 241 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGADEVLNSLD--DSPKDKKAAGLGGGFDVIFDFVG 241 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCCC--cCHHHHHHHhcCCCceEEEECCC
Confidence 457899998887 34322 1122366899999999988876542 222222210 111 123456999886532
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
. ...++++.+.|+++|.++..
T Consensus 242 ~------~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 242 T------QPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred C------HHHHHHHHHHhhcCCEEEEE
Confidence 1 35788899999999977653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.76 E-value=4.4 Score=37.36 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=62.9
Q ss_pred CCCCeEEEECCCcchhccCC---CCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCC-CCCCcee
Q 021661 147 TPGVSILDLCSSWVSHFPPG---YKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLP-FEDNSFD 210 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~---~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp-~~~~sfD 210 (309)
..+.++|=||.|-|..+... ....+++-+|+....++..++ ++....+|... -+. ...+.||
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~--fl~~~~~~~~d 197 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFL--FLEDLKENPFD 197 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHH--HHHHhccCCce
Confidence 34689999999855443322 223478999999888876554 26667777631 122 2368899
Q ss_pred EEEeccc---hhccC-CHHHHHHHHHhhcccCcEEEEEe
Q 021661 211 VITNVVS---VDYLT-KPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 211 lVis~~v---l~~l~-d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+|+.-.. ..... -.+.++..+.+.||+||.+++.-
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 9986421 11100 12578888999999999887754
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=80.62 E-value=1.4 Score=40.18 Aligned_cols=63 Identities=10% Similarity=0.083 Sum_probs=41.3
Q ss_pred eEEEECCCcchh--ccCCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCCCCC--CCceeEEEecc
Q 021661 151 SILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFE--DNSFDVITNVV 216 (309)
Q Consensus 151 ~ILDiGcG~g~~--~~~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~lp~~--~~sfDlVis~~ 216 (309)
+++|+-||.|.. -........+.++|+++.+++..+.+ ...+.+|+ .++... ...+|+|+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di---~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEGDI---TKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCCCccCcc---ccCchhhcCCCCCEEEeCC
Confidence 689998875532 12222234688999999999876665 23567888 454322 35699999653
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=80.60 E-value=1.4 Score=40.98 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=38.8
Q ss_pred CCCCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCC-----C-CCCcee
Q 021661 147 TPGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP-----F-EDNSFD 210 (309)
Q Consensus 147 ~~~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp-----~-~~~sfD 210 (309)
.++..++|.=-|.| ..++...+.++++|+|-.+.+++.++++ +.++..+. .++. . ..+++|
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F---~~l~~~l~~~~~~~~~d 95 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNF---SNLDEYLKELNGINKVD 95 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-G---GGHHHHHHHTTTTS-EE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccH---HHHHHHHHHccCCCccC
Confidence 45789999844433 3344455669999999999999877643 56777776 4432 2 334688
Q ss_pred EEEe
Q 021661 211 VITN 214 (309)
Q Consensus 211 lVis 214 (309)
.|+.
T Consensus 96 giL~ 99 (310)
T PF01795_consen 96 GILF 99 (310)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8884
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=80.20 E-value=1.8 Score=44.56 Aligned_cols=51 Identities=18% Similarity=0.153 Sum_probs=31.9
Q ss_pred cEEEecCCCCCCCCCCCCceeEEEecc-chhccCCH--HHHHHHHHhhcccCcEEE
Q 021661 190 EYVVQDLNLNPKLPFEDNSFDVITNVV-SVDYLTKP--IEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 190 ~~~~~D~~~~~~lp~~~~sfDlVis~~-vl~~l~d~--~~~l~~i~rvLkpGG~li 242 (309)
++..+|+. +.++--...||+++.-. +=..-++. ..+|++|.|+++|||.++
T Consensus 150 ~l~~gd~~--~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~ 203 (662)
T PRK01747 150 DLWFGDAN--ELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA 203 (662)
T ss_pred EEEecCHH--HHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE
Confidence 45666762 22332224589988643 22222222 689999999999999876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 309 | ||||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 2e-04 |
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 6e-13
Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 23/167 (13%)
Query: 116 FYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLC------SSWVSHFPPGYKQ 169
+Y T I+ + + + +LDL S + + G++
Sbjct: 6 YYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDY--GFE- 62
Query: 170 DRIVGMGMNEEELKR-------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222
+VG+ ++E+ +++ E++V D KL FED +FD + + S+ +
Sbjct: 63 --VVGVDISEDMIRKAREYAKSRESNVEFIVGDAR---KLSFEDKTFDYVIFIDSIVHFE 117
Query: 223 K--PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHV 267
+VFKE+ +VLKP G I+ F++ + G +
Sbjct: 118 PLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWI 164
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-11
Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 171 RIVGMGMNEEELKR-----------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219
I + ++ + + + + V D++ +P EDN D+I + SV
Sbjct: 68 SIRALDFSKHMNEIALKNIADANLNDRI--QIVQGDVH---NIPIEDNYADLIVSRGSVF 122
Query: 220 YLTKPIEVFKEMCQVLKPGGLAIVS 244
+ F+E+ ++LK GG +
Sbjct: 123 FWEDVATAFREIYRILKSGGKTYIG 147
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 2e-11
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFW 251
LPFE+ F+ I + S+++ +P+ E+ +VLK G A ++
Sbjct: 109 SLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAK 159
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 3e-11
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 148 PGVSILDLC------SSWVSHFPPGYKQDRIVGMGMNEEELK--RNPVLTEYVVQDLNLN 199
+LDL S ++ G+ +V + ++E L+ R + V
Sbjct: 54 NPCRVLDLGGGTGKWSLFLQ--ERGF---EVVLVDPSKEMLEVAREKGVKNVVEAKAE-- 106
Query: 200 PKLPFEDNSFD-VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248
LPF +F+ V+ + Y+ + F E+ +VL P GL I + N
Sbjct: 107 -DLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 4e-11
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 19/118 (16%)
Query: 148 PGVSILDLCS---SWVSHFPPGYKQDRIVGMGMNEEELKR----------NPVLTEYVVQ 194
PG +L+ + I + ++ E L++ V +++
Sbjct: 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNV--KFLQA 94
Query: 195 DLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFW 251
++ LPFED+SFD I +++L P E K + +VLKPGG + ++ + +
Sbjct: 95 NIF---SLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCY 149
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 4e-11
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 27/140 (19%)
Query: 124 THIDDPAIAALTKYYSEVFPPSNTPGVSILDL-C-----SSWVSHFPPGYKQDRIVGMGM 177
T I P + KY +E + ++LD + + G+ +
Sbjct: 4 TIIRQPQLYRFLKYCNE-----SNLDKTVLDCGAGGDLPPLSIFVEDGY----KTYGIEI 54
Query: 178 NEEELKR-------NPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVF 228
++ +LK+ N D+ KLPF+D S + + ++ ++ K E
Sbjct: 55 SDLQLKKAENFSRENNFKLNISKGDIR---KLPFKDESMSFVYSYGTIFHMRKNDVKEAI 111
Query: 229 KEMCQVLKPGGLAIVSFSNR 248
E+ +VLKPGGLA ++F
Sbjct: 112 DEIKRVLKPGGLACINFLTT 131
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 61.1 bits (148), Expect = 5e-11
Identities = 25/182 (13%), Positives = 64/182 (35%), Gaps = 20/182 (10%)
Query: 104 DFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLC--SSWVS 161
D + F E + + + + + ++LDL W
Sbjct: 9 DDKHFFEQYSQMPRSKEGLKAAGEWHELKKM---------LPDFNQKTVLDLGCGFGWHC 59
Query: 162 HFPPGYKQDRIVGM----GMNEEELKRNPVLT-EYVVQDLNLNPKLPFEDNSFDVITNVV 216
+ + +++G+ M E ++ Y + + + E ++++V+ + +
Sbjct: 60 IYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIE---DIAIEPDAYNVVLSSL 116
Query: 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHV-MIVGAYFH 275
++ Y+ ++ K++ LK G I S + F W + + + V YF+
Sbjct: 117 ALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFN 176
Query: 276 YA 277
+
Sbjct: 177 ES 178
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-10
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248
LP +D SFD V ++ ++ P KE ++LK GG IV +R
Sbjct: 95 NLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 57.5 bits (139), Expect = 7e-10
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 246
LPF D+SFD+IT + + + + +E+ +VLK G +V
Sbjct: 80 SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 126
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-09
Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 190 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249
Y DL+ KL +SFD+ + +++ Y+ +F+ + Q L PGG + S +
Sbjct: 92 TYERADLD---KLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPI 148
Query: 250 FWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 288
+ A W + + Y A +
Sbjct: 149 YMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGV 187
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-09
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 246
++PF D F ++T ++ + P E +VLK GG L +V S
Sbjct: 96 QMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 1e-09
Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 19/136 (13%)
Query: 148 PGVSILDLCS---SWVSHFPPGYKQDRIVGM----GMNEEELKRNPVLTEYVVQDLNLNP 200
PG S+L++ + W+ P + VG+ M +R P +V
Sbjct: 36 PGESLLEVGAGTGYWLRRLPYP----QKVGVEPSEAMLAVGRRRAPEA-TWVRAWGE--- 87
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFWTKAISIWT 259
LPF SFDV+ +++++ V E +VL+PGG L + W +
Sbjct: 88 ALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAAL---YR 144
Query: 260 STGDADHVMIVGAYFH 275
G+ + A F
Sbjct: 145 RLGEKGVLPWAQARFL 160
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 1e-09
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI---- 257
+P+E+ FD + +++L P V +++ +K G+ + S N + +
Sbjct: 87 MPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGN 146
Query: 258 ----WTSTGDADHV 267
D H+
Sbjct: 147 WTYTEYGLLDKTHI 160
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-09
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 246
K+P DN+ D I + L++P++ +E+ +V KP LAI+ +
Sbjct: 99 KIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWK 145
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 4e-09
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 201 KLPFEDNSFDVIT------NVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFS 246
L F D+SFD +V ++ + KE+ +VLKPG L +V F
Sbjct: 94 SLSFHDSSFDFAVMQAFLTSVPDPKERSR---IIKEVFRVLKPGAYLYLVEFG 143
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-08
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 21/116 (18%)
Query: 147 TPGVSILDLCS-------SWVSHFPPGYKQDRIVGM----GMNE---EELKRNPVLTEYV 192
T V I+D + P G + G+ + E + P +E++
Sbjct: 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLPYDSEFL 77
Query: 193 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248
D ++ D +D+ + ++T P + ++M +K GG I +
Sbjct: 78 EGDAT---EIELNDK-YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW 129
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 4e-08
Identities = 22/114 (19%), Positives = 43/114 (37%), Gaps = 24/114 (21%)
Query: 147 TPGVSILDLCSSW-------VSHFPPGYKQDRIVGMGMNEEELKRNPVLT---------E 190
G +LD+ + R+ G+ ++ ++ +
Sbjct: 60 RSGDRVLDVGCGIGKPAVRLATARDV-----RVTGISISRPQVNQANARATAAGLANRVT 114
Query: 191 YVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244
+ D LPFED SFD + + S+ ++ +EM +VL+PGG ++
Sbjct: 115 FSYADAM---DLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIA 165
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 4e-08
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNR 248
DNS D I S + V E+ ++LK G + I+ +
Sbjct: 68 PKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE 116
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 8e-08
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 171 RIVGMGMNEEELKRN---------PVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221
+I G+ + + ++ + + ++ LPF++ D+I + ++ +
Sbjct: 71 QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD---NLPFQNEELDLIWSEGAIYNI 127
Query: 222 TKPIEVFKEMCQVLKPGGLAIVS 244
E + LK GG VS
Sbjct: 128 GFE-RGMNEWSKYLKKGGFIAVS 149
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-07
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Query: 190 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE---VFKEMCQVLKPGGLAIVSFS 246
+VV DL+ + FD+I + +V + + L G A++ F
Sbjct: 92 RWVVGDLS---VDQISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFG 148
Query: 247 NRCFWT 252
W
Sbjct: 149 AGRGWV 154
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 23/113 (20%)
Query: 147 TPGVSILDLCSSW-------VSHFPPGYKQDRIVGMGMNEEELKRNPVLT------EYVV 193
+LD+ S + G+ + + +
Sbjct: 54 NENSKVLDIGSGLGGGCMYINEKYGA-----HTHGIDICSNIVNMANERVSGNNKIIFEA 108
Query: 194 QDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVS 244
D+ F +N+FD+I + ++ L+ ++F++ + LKP G +++
Sbjct: 109 NDIL---TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLIT 158
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 3e-07
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 193 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFW 251
+++L D+S D++ + + T + +FKE+ +VL+ GG L
Sbjct: 151 IENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRL 210
Query: 252 TKAISIW 258
++A
Sbjct: 211 SEAAQQD 217
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-07
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248
+P D S + V + +V E +VLKPGG + +
Sbjct: 98 IPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQA 144
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 25/153 (16%)
Query: 109 DESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSN-TPGVSILDLCSSW-------V 160
E Y+ P I + ++ SE+ LDL + + V
Sbjct: 42 GEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLV 101
Query: 161 SHFPPGYKQDRIVGMGMNEEELKRNPVLT---------EYVVQDLNLNPKLPFEDNSFDV 211
F I + + + KRN ++P EDNS+D
Sbjct: 102 RKFGV-----SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFL---EIPCEDNSYDF 153
Query: 212 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244
I + + + ++VF+E +VLKP G+ ++
Sbjct: 154 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAIT 186
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 3e-07
Identities = 29/147 (19%), Positives = 48/147 (32%), Gaps = 30/147 (20%)
Query: 148 PGVSILDLCSSWVSHF-------PPGYKQDRIVGMGMNEEELKR-----------NPVLT 189
PG + + W+S PG ++VG+ + E L +
Sbjct: 118 PGCVVASVPCGWMSELLALDYSACPGV---QLVGIDYDPEALDGATRLAAGHALAGQI-- 172
Query: 190 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP---IEVFKEMCQVLKPGGLAIVSFS 246
QD KL + +D++T+ Y E+++ Q LKPGG + SF
Sbjct: 173 TLHRQDAW---KLDTRE-GYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL 228
Query: 247 NRCFWTKAISIWTSTGDADHVMIVGAY 273
S W H + +
Sbjct: 229 TPPPALSPDSPWDMQAIDPHDLQLQQL 255
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 4e-07
Identities = 10/48 (20%), Positives = 28/48 (58%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248
L D S D + +++++ + + + F+EM ++++ G + +++F R
Sbjct: 87 NLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIR 134
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 6e-07
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244
LPF + D+I + ++ + E + LK GG VS
Sbjct: 107 DLPFRNEELDLIWSEGAIYNIGFE-RGLNEWRKYLKKGGYLAVS 149
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 7e-07
Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 23/112 (20%)
Query: 148 PGVSILDLCSSW-------VSHFPPGYKQDRIVGM----GMNEEELKRNPVLT--EYVVQ 194
ILDL + + +P + M E R +Y+
Sbjct: 44 ENPDILDLGAGTGLLSAFLMEKYPEA----TFTLVDMSEKMLEIAKNRFRGNLKVKYIEA 99
Query: 195 DLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVS 244
D + K F + +D++ + +S+ +L E++K +LK G+ I +
Sbjct: 100 DYS---KYDF-EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINA 147
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 8e-07
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFWTKA 254
++P ED S DV +S+ T + +E +VLKPGG L + S+R +
Sbjct: 108 QVPLEDESVDVAVFCLSL-MGTNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRT 161
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-06
Identities = 6/58 (10%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 190 EYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSF 245
+ + L + + S+ ++ + + ++ GG ++SF
Sbjct: 87 TFHHGTI---TDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSF 141
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 4e-06
Identities = 7/84 (8%), Positives = 16/84 (19%), Gaps = 6/84 (7%)
Query: 169 QDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223
+ + P D FD + S+ Y
Sbjct: 78 SPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFAS 137
Query: 224 PIEVFKEMCQVLKPGG-LAIVSFS 246
+ + + + +S
Sbjct: 138 ANALALLFKNMAAVCDHVDVAEWS 161
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 4e-06
Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 27/175 (15%)
Query: 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCS---SWVSHFPPGYKQDRIVGMGMNEE--- 180
D + E P G I D+ + Y + G+ ++EE
Sbjct: 16 QDVPYPEWVAWVLEQVEP----GKRIADIGCGTGTATLLLADHY---EVTGVDLSEEMLE 68
Query: 181 ----ELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP---IEVFKEMCQ 233
+ ++ VQD+ +L + + S++YL + F +
Sbjct: 69 IAQEKAMETNRHVDFWVQDMR---ELELPEPVDAITILCDSLNYLQTEADVKQTFDSAAR 125
Query: 234 VLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 288
+L GG + + + T A+ +Y +A E P +V
Sbjct: 126 LLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQ----SSYIWFADPGEEPLSVVH 176
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-06
Identities = 18/85 (21%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 190 EYVVQDLNLNPKLPFEDNSFDVITNVV-SVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246
E++ D+ ++ F N FD +T ++ Y + ++F ++ + LKPGG+ I F
Sbjct: 91 EFLQGDVL---EIAF-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146
Query: 247 NRCFWTK-AISIWTSTGDADHVMIV 270
+ + +W + ++I+
Sbjct: 147 CWFYGGRDGPVVWNEQKGEEKLVIM 171
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-05
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 2/76 (2%)
Query: 193 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFW 251
+ E +D I + + Y+ K +L + I+ S W
Sbjct: 120 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW 179
Query: 252 TKAI-SIWTSTGDADH 266
K + D
Sbjct: 180 DKLWKKYGSRFPQDDL 195
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 1e-05
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 177 MNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMC 232
M EE + + ++++ + N++D+I + YLT ++ FK
Sbjct: 128 MLEEAKRELAGMPVGKFILASME---TATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQ 184
Query: 233 QVLKPGGLAIVSFSNR 248
Q L P G +
Sbjct: 185 QALTPNGYIFFKENCS 200
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-05
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 14/121 (11%)
Query: 171 RIVGM----GMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP-- 224
+ G+ M ++ P D S D I + + +LT
Sbjct: 69 TVYGIEPSREMRMIAKEKLPKEFSITEGDFL---SFEV-PTSIDTIVSTYAFHHLTDDEK 124
Query: 225 IEVFKEMCQVLKPGGLAIVS---FSNRCFWTKAISIWTSTGDADHVMIVGA-YFHYAGGY 280
+ Q+L GG + + F+++ + K + G + Y+
Sbjct: 125 NVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVM 184
Query: 281 E 281
+
Sbjct: 185 Q 185
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 201 KLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243
PF+ + N S Y+ ++F E + LK GG +
Sbjct: 178 DTPFDKGAVTASWNNESTMYVDLH-DLFSEHSRFLKVGGRYVT 219
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 9/86 (10%)
Query: 192 VVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSNRC 249
VV+ + D D + V++L E+ +K ++ N
Sbjct: 85 VVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN-- 142
Query: 250 FWTKAISIWTSTGDADHVMIVGAYFH 275
T S+ D H H
Sbjct: 143 -PTSLYSLINFYIDPTHKK----PVH 163
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 42.7 bits (100), Expect = 6e-05
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 183 KRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGL 240
+ + Y L E +S+DVI + +LT E + L+P G+
Sbjct: 124 EEGKRVRNYFCCGL---QDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGI 180
Query: 241 AIVS 244
++
Sbjct: 181 IVIK 184
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 6e-05
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF 250
+D+I ++ + IE+ M +L PGG ++ +
Sbjct: 110 KVPVGKDYDLICANFALLHQD-IIELLSAMRTLLVPGGALVIQTLHPWS 157
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 1e-04
Identities = 42/275 (15%), Positives = 76/275 (27%), Gaps = 99/275 (36%)
Query: 85 VEQVL-KDVQWPEQFPFKEEDFQR------FDESPDSLFYE----TPRFVTHIDDPAIAA 133
VE+VL + ++ P K E Q + E D L+ + V+ +
Sbjct: 83 VEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP--YLK 139
Query: 134 LTKYYSEVFPPSNT-----PGV--SIL--DLCSSW--VSHFPPGYKQDRI--VGMG-MNE 179
L + E+ P N G + + D+C S+ +I + + N
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD-----FKIFWLNLKNCNS 194
Query: 180 EELKRNPVLTEYVVQDLNL--------NPKLPFED---------------NSFDVITNVV 216
E + D N N KL N V+ NV
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWT--STGDADHVMIVGAYF 274
+ K F C++L ++ T+ + S H+ +
Sbjct: 255 N----AKAWNAFNLSCKIL-------LT-------TRFKQVTDFLSAATTTHISLD---- 292
Query: 275 HYAGGYE-------------------PPQAVDISP 290
H++ P + + +P
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 22/159 (13%)
Query: 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCS---SWVSHFPP-GYKQDRIVGMGMNEE-- 180
D + + E +N LDL + + P + +++E
Sbjct: 16 ADVDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK---NTWAVDLSQEML 72
Query: 181 -----ELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVV-SVDYLTKP---IEVFKEM 231
+ + + QD++ L + FD+IT + S +Y+ + FK +
Sbjct: 73 SEAENKFRSQGLKPRLACQDIS---NLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAV 128
Query: 232 CQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIV 270
LK GG+ I ++ ++ + D D V
Sbjct: 129 SNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYY 167
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 2e-04
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 171 RIVGM----GMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIE 226
++G M E+ + P L + V D D D + + + ++ +P
Sbjct: 81 EVLGTDNAATMIEKARQNYPHL-HFDVADAR---NFRV-DKPLDAVFSNAMLHWVKEPEA 135
Query: 227 VFKEMCQVLKPGGLAIVSFSNRCFWTKAISIW 258
+ Q LK GG + F + +
Sbjct: 136 AIASIHQALKSGGRFVAEFGGKGNIKYILEAL 167
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 2e-04
Identities = 22/136 (16%), Positives = 51/136 (37%), Gaps = 17/136 (12%)
Query: 148 PGVSILDL-CS--SWVSHFPPGYKQDRIVGMGMNEEELKRN------PVLTEYVVQDLNL 198
++DL C + +S ++I G+ ++ L+R L E + ++L
Sbjct: 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88
Query: 199 N----PKLPFEDNSFDVITNVVSVDYLTKPI--EVFKEMCQVLKPGGLAIVSFSNRCFWT 252
+ +D T + +++L + K + + +P + IVS N+ +
Sbjct: 89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTV-IVSTPNKEYNF 147
Query: 253 KAISIWTSTG-DADHV 267
+++ DH
Sbjct: 148 HYGNLFEGNLRHRDHR 163
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 2e-04
Identities = 20/136 (14%), Positives = 46/136 (33%), Gaps = 17/136 (12%)
Query: 147 TPGVSILDL-CS--SWVSHFPPGYKQDRIVGMGMNEEEL----KRNPVLTEYVVQDLNLN 199
+ ++DL C + + ++I G+ ++ L +R L Q L
Sbjct: 28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQ 87
Query: 200 ------PKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSNRCFW 251
+ +D T + +++L + + + +P + IV+ N +
Sbjct: 88 LIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIV-IVTTPNIEYN 146
Query: 252 TKAISIWTST-GDADH 266
K ++ DH
Sbjct: 147 VKFANLPAGKLRHKDH 162
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 4e-04
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 205 EDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTG 262
+++D + + ++ + +V K + + LKPGGL S+ +G
Sbjct: 99 AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASY--------------KSG 144
Query: 263 DADHVMIVGAYFHY 276
+ + + Y++Y
Sbjct: 145 EGEGRDKLARYYNY 158
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 5e-04
Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 179 EEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPG 238
++ + V V +L ++++ I ++ + +++ ++ Q LKPG
Sbjct: 68 KQLAQEKGVKITTVQSNLA---DFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPG 124
Query: 239 G-LAIVSFS 246
G + F+
Sbjct: 125 GVFILEGFA 133
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 206 DNSFDVITNVVSVDYLTKPIEVFKEMCQ-VLKPGGLAIVSFSNRCFWTKAISIWTSTGDA 264
+D I ++++ P+ + K + L GG + N ++ I++
Sbjct: 101 PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISH 160
Query: 265 DHVMIVGAYFH 275
+ + + H
Sbjct: 161 NSAVTEAEFAH 171
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 8e-04
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 183 KRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242
KR P + V + +LPF D S D I + + +E+ +V+KPGG I
Sbjct: 127 KRYP-QVTFCVASSH---RLPFSDTSMDAIIRIYAP-------CKAEELARVVKPGGWVI 175
Query: 243 VS 244
+
Sbjct: 176 TA 177
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 8e-04
Identities = 30/215 (13%), Positives = 57/215 (26%), Gaps = 32/215 (14%)
Query: 57 AAFCSQFMTMAGT-------LGANSLIASARQRGAVEQVLKDVQWPEQFPFKEEDFQRFD 109
F + T GT G + + + + PF E
Sbjct: 21 QMFQEKHNTKVGTWGKLTVLKGKLKFYELTENGDVIAEHIFTPES--HIPFVEPQAWHRV 78
Query: 110 E--SPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNT-PGVSILDLCSSWVSHFPP- 165
E S D T + +V + +LDL +
Sbjct: 79 EALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYL 138
Query: 166 ---GYKQDRIVGMGMNEEEL-------KRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNV 215
GY + NE + ++ + + D+N ++D I +
Sbjct: 139 SLLGYD---VTSWDHNENSIAFLNETKEKENLNISTALYDIN---AANI-QENYDFIVST 191
Query: 216 VSVDYLTKPI--EVFKEMCQVLKPGGLAIVSFSNR 248
V +L + + K M + GG ++ +
Sbjct: 192 VVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMS 226
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.79 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.78 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.76 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.76 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.75 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.75 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.74 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.74 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.74 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.74 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.74 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.73 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.73 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.72 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.72 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.72 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.72 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.72 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.71 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.71 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.71 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.71 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.71 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.71 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.71 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.7 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.7 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.69 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.69 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.69 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.69 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.69 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.69 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.69 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.68 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.68 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.68 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.68 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.67 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.67 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.66 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.66 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.66 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.66 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.66 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.66 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.65 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.65 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.65 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.65 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.65 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.65 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.64 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.64 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.64 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.64 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.64 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.63 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.62 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.62 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.62 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.62 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.62 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.61 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.61 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.6 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.59 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.59 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.59 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.58 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.58 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.58 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.57 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.57 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.56 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.56 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.56 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.55 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.55 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.55 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.54 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.54 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.54 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.53 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.52 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.52 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.52 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.52 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.51 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.51 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.51 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.51 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.5 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.5 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.5 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.5 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.5 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.5 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.5 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.49 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.49 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.49 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.48 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.48 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.48 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.48 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.47 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.47 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.47 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.47 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.47 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.47 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.47 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.46 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.46 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.46 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.46 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.45 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.45 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.45 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.45 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.45 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.45 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.45 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.45 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.45 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.44 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.44 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.43 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.43 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.43 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.43 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.43 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.42 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.42 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.42 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.42 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.39 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.39 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.38 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.38 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.38 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.37 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.37 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.37 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.37 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.36 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.36 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.35 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.35 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.35 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.35 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.35 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.35 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.34 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.34 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.34 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.34 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.34 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.34 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.33 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.33 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.33 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.32 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.32 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.32 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.31 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.31 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.3 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.3 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.29 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.29 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.29 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.28 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.28 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.28 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.27 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.27 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.26 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.26 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.26 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.26 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.26 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.26 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.25 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.23 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.23 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.22 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.21 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.21 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.21 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.21 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.21 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.2 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.2 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.19 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.19 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.19 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.19 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.19 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.19 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.18 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.18 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.16 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.14 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.12 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.11 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.11 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.09 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.09 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.09 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.08 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.08 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.08 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.08 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.07 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.07 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.07 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.07 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.07 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.07 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.06 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.06 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.06 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.06 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.06 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.05 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.03 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.02 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.01 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.99 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.99 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.99 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.99 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.95 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.95 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.94 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.93 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.9 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.89 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.89 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.87 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.83 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.83 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.8 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.78 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.77 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.74 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.72 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.72 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.7 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.66 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.65 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.57 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.56 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.53 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.5 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.49 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.49 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.47 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.46 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.39 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.35 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.34 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.3 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.28 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.25 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.25 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.23 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.19 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.19 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.18 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.17 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.17 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.16 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.05 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.04 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.02 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.01 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.98 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.84 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.8 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.78 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.78 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.75 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.72 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.71 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.46 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.4 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.29 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.17 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.15 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.14 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.12 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.07 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.75 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.51 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.77 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 94.62 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 94.24 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.66 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 93.49 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.39 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 92.25 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.24 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 92.15 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 90.54 | |
| 1ej6_A | 1289 | Lambda2; icosahedral, non-equivalence, dsRNA virus | 90.52 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 90.44 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 90.23 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 89.88 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 89.49 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 88.67 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 88.52 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 88.47 | |
| 3iyl_W | 1299 | VP1; non-enveloped virus, membrane penetration pro | 88.33 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 87.74 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 87.72 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 87.23 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 87.02 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 86.8 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 86.26 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 85.99 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 85.98 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 85.89 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 85.64 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 84.41 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 84.4 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 84.33 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 84.32 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 84.09 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 84.08 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 84.05 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 83.61 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 83.6 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 83.44 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 83.18 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 82.94 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 82.27 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 82.15 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 81.92 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 81.85 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 81.32 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 81.29 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 81.06 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 80.78 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 80.11 |
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-19 Score=160.80 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=86.8
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCCCCCCCceeE
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
.+++.+..+. +.+|||||||+|... ..+..+.+|+|+|+|+.|++.|++. ++++++|+ +++|+++++||+
T Consensus 30 ~~~l~~~~~~----~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~---e~~~~~~~sfD~ 102 (257)
T 4hg2_A 30 FRWLGEVAPA----RGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPA---EDTGLPPASVDV 102 (257)
T ss_dssp HHHHHHHSSC----SSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCT---TCCCCCSSCEEE
T ss_pred HHHHHHhcCC----CCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhh---hhhcccCCcccE
Confidence 4555565553 679999999999543 2233467999999999999999874 89999999 899999999999
Q ss_pred EEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 212 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 212 Vis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|++..++||+ ++.+++++++|+|||||.|++...
T Consensus 103 v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 103 AIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp EEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEEC
Confidence 9999999887 688999999999999998866543
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.9e-19 Score=157.16 Aligned_cols=107 Identities=15% Similarity=0.264 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cC--CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PP--GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDL 196 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~--~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~ 196 (309)
+..+..+..+.+++ +.+|||||||+|... .. ..++.+|+|+|+|+.|++.|++ +++++++|+
T Consensus 57 ~~~i~~l~~~~~~~----~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~ 132 (261)
T 4gek_A 57 ISMIGMLAERFVQP----GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI 132 (261)
T ss_dssp HHHHHHHHHHHCCT----TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCT
T ss_pred HHHHHHHHHHhCCC----CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccc
Confidence 34444455555554 889999999999543 22 2357799999999999998765 378999999
Q ss_pred CCCCCCCCCCCceeEEEeccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 197 NLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 197 ~~~~~lp~~~~sfDlVis~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.++|+ ++||+|+++++++|+++. ..+|++++++|||||.|++...
T Consensus 133 ---~~~~~--~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 133 ---RDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp ---TTCCC--CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---ccccc--cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 78876 459999999999999754 5789999999999998887643
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=154.08 Aligned_cols=108 Identities=17% Similarity=0.307 Sum_probs=88.8
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchhccCC-CCCC-eEEEEeCCHHHHhhCCC-----CCcEEEecCCCCCCCCCCCCce
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSHFPPG-YKQD-RIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFEDNSF 209 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~~~-~v~giD~S~~~l~~a~~-----~i~~~~~D~~~~~~lp~~~~sf 209 (309)
.+...++. .++.+|||||||+|...... ..+. +|+|+|+|+.|++.+++ +++++++|+ ..+++++++|
T Consensus 35 ~l~~~~~~--~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~f 109 (253)
T 3g5l_A 35 ELKKMLPD--FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAI---EDIAIEPDAY 109 (253)
T ss_dssp HHHTTCCC--CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCG---GGCCCCTTCE
T ss_pred HHHHhhhc--cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcch---hhCCCCCCCe
Confidence 34455542 45789999999999543211 1133 99999999999998765 478999999 7888888999
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
|+|++..+++|+.++..+|+++.++|||||.++++++++.
T Consensus 110 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 149 (253)
T 3g5l_A 110 NVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPV 149 (253)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred EEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCc
Confidence 9999999999999999999999999999999999877654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-18 Score=147.04 Aligned_cols=149 Identities=13% Similarity=0.090 Sum_probs=105.1
Q ss_pred CCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
++.+|||||||+|..... +..+.+|+|+|+|+.|++.+++ +++++++|+ .+++++ ++||+|++..+++|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~---~~~~~~-~~fD~v~~~~~l~~~~ 120 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDF---LSFEVP-TSIDTIVSTYAFHHLT 120 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCS---SSCCCC-SCCSEEEEESCGGGSC
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCCh---hhcCCC-CCeEEEEECcchhcCC
Confidence 478999999999954322 1226799999999999998765 488999999 788877 8999999999999999
Q ss_pred CHHH--HHHHHHhhcccCcEEEEEecCcch---hHHHhhhhhcCC-----------CCchhHhHHHHHHHhCCCCCCcee
Q 021661 223 KPIE--VFKEMCQVLKPGGLAIVSFSNRCF---WTKAISIWTSTG-----------DADHVMIVGAYFHYAGGYEPPQAV 286 (309)
Q Consensus 223 d~~~--~l~~i~rvLkpGG~lii~~~~~~~---~~~~~~~w~~~~-----------~~~h~~~~~~~f~~~~Gf~~~~~~ 286 (309)
++.. +|+++.++|||||.+++..++... .......+...+ .......+.+.+ ..+||+...+.
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~v~~~~ 199 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIF-ENNGFHVTFTR 199 (220)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHH-HHTTEEEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHH-HHCCCEEEEee
Confidence 8877 999999999999999988655322 222222221111 111223334445 56999633322
Q ss_pred eccCCCCCCCCcEEEEEEeCCC
Q 021661 287 DISPNPGRSDPMYVVYSRKAST 308 (309)
Q Consensus 287 ~~~~~~~~~~p~~~v~a~k~~~ 308 (309)
. . +-.+++.++|+++
T Consensus 200 ~-~------~~~w~~~~~~~~~ 214 (220)
T 3hnr_A 200 L-N------HFVWVMEATKQLE 214 (220)
T ss_dssp C-S------SSEEEEEEEECSC
T ss_pred c-c------ceEEEEeehhhhh
Confidence 2 1 4568888888764
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=149.29 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=83.7
Q ss_pred CCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 149 GVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
+.+|||||||+|..... +..+.+|+|+|+|+.|++.+++ +++++++|+ +++ .++++||+|++.++++|+++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~---~~~-~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRF---EDA-QLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCG---GGC-CCSSCEEEEEEESCGGGCSS
T ss_pred CCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccH---HHc-CcCCcccEEEEhhHHHhhcC
Confidence 67999999999964422 2234589999999999988765 578999999 666 46788999999999999999
Q ss_pred HHHHHHHHH-hhcccCcEEEEEecCcchh
Q 021661 224 PIEVFKEMC-QVLKPGGLAIVSFSNRCFW 251 (309)
Q Consensus 224 ~~~~l~~i~-rvLkpGG~lii~~~~~~~~ 251 (309)
+..+|+++. ++|||||.+++++++....
T Consensus 119 ~~~~l~~~~~~~LkpgG~l~i~~~~~~~~ 147 (250)
T 2p7i_A 119 PVALLKRINDDWLAEGGRLFLVCPNANAV 147 (250)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCH
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCChHHH
Confidence 999999999 9999999999999886544
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=147.52 Aligned_cols=146 Identities=10% Similarity=-0.014 Sum_probs=107.4
Q ss_pred CCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC---CCcEEEecCCCCCCCCCCCCceeEEEeccchhccC--
Q 021661 149 GVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT-- 222 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~---~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~-- 222 (309)
+.+|||||||+|..... +..+.+|+|+|+|+.|++.+++ +++++++|+ .++++++++||+|++..+++|++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTI---TDLSDSPKRWAGLLAWYSLIHMGPG 118 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCG---GGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcc---cccccCCCCeEEEEehhhHhcCCHH
Confidence 67999999999954321 1226699999999999998876 489999999 78888889999999999999997
Q ss_pred CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCC---chhHhHHHHHHHhCCCCCCceeeccCCCCCCCCcE
Q 021661 223 KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDA---DHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMY 299 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~---~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p~~ 299 (309)
++..+|+++.++|||||.+++++.+..... .+...... -....+.+.+ ..+||+.+++..... .|.-
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~~~~~~~~~-----~p~~ 188 (203)
T 3h2b_A 119 ELPDALVALRMAVEDGGGLLMSFFSGPSLE----PMYHPVATAYRWPLPELAQAL-ETAGFQVTSSHWDPR-----FPHA 188 (203)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEEECCSSCE----EECCSSSCEEECCHHHHHHHH-HHTTEEEEEEEECTT-----SSEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEEccCCchh----hhhchhhhhccCCHHHHHHHH-HHCCCcEEEEEecCC-----Ccch
Confidence 899999999999999999999876643211 11111000 1123344445 558999877776655 5666
Q ss_pred EEEEEeCC
Q 021661 300 VVYSRKAS 307 (309)
Q Consensus 300 ~v~a~k~~ 307 (309)
+++..|..
T Consensus 189 ~l~~~~~~ 196 (203)
T 3h2b_A 189 YLTAEASL 196 (203)
T ss_dssp EEEEEECC
T ss_pred hhhhhhhh
Confidence 66665553
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.2e-18 Score=149.00 Aligned_cols=106 Identities=24% Similarity=0.406 Sum_probs=87.0
Q ss_pred HHhhCCCCCCCCCeEEEECCCcchhccCC-CCCC-eEEEEeCCHHHHhhCCCC-----CcEEEecCCCCCCCCCCCCcee
Q 021661 138 YSEVFPPSNTPGVSILDLCSSWVSHFPPG-YKQD-RIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDNSFD 210 (309)
Q Consensus 138 ~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~~~-~v~giD~S~~~l~~a~~~-----i~~~~~D~~~~~~lp~~~~sfD 210 (309)
+...++. .++.+|||||||+|...... ..+. +|+|+|+|+.|++.++++ ++++++|+ ..+++++++||
T Consensus 35 l~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~fD 109 (243)
T 3bkw_A 35 LRAMLPE--VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADL---DKLHLPQDSFD 109 (243)
T ss_dssp HHHHSCC--CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCG---GGCCCCTTCEE
T ss_pred HHHhccc--cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcCh---hhccCCCCCce
Confidence 4445542 35789999999998543211 1244 999999999999987654 68999999 77888788999
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+|++..+++|++++..+|+++.++|||||.++++++++
T Consensus 110 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 147 (243)
T 3bkw_A 110 LAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHP 147 (243)
T ss_dssp EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred EEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCc
Confidence 99999999999999999999999999999999988764
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.1e-18 Score=146.35 Aligned_cols=97 Identities=25% Similarity=0.320 Sum_probs=86.2
Q ss_pred CCCeEEEECCCcchhccCCCCCC-eEEEEeCCHHHHhhCCC---CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 148 PGVSILDLCSSWVSHFPPGYKQD-RIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~~~~~-~v~giD~S~~~l~~a~~---~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
++.+|||||||+|...... +. +|+|+|+|+.|++.+++ +++++++|+ .++|+++++||+|++..+++|+++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~~~~ 110 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL--PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWG---EALPFPGESFDVVLLFTTLEFVED 110 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC--CCSEEEEECCCHHHHHHHHHHCTTSEEECCCT---TSCCSCSSCEEEEEEESCTTTCSC
T ss_pred CCCeEEEECCCCCHhHHhC--CCCeEEEEeCCHHHHHHHHHhCCCcEEEEccc---ccCCCCCCcEEEEEEcChhhhcCC
Confidence 4789999999999655444 45 99999999999998876 488999999 888888889999999999999999
Q ss_pred HHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 224 PIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
+.++++++.++|||||.+++.++++.
T Consensus 111 ~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 111 VERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 99999999999999999999887753
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=152.56 Aligned_cols=140 Identities=13% Similarity=0.072 Sum_probs=106.5
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC--CCCCCceeEEEeccchhccCC
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL--PFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l--p~~~~sfDlVis~~vl~~l~d 223 (309)
.++.+|||||||+|...... ..+.+|+|+|+|+.|++.++++++++++|+ .++ ++++++||+|++..+++|+++
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~d~---~~~~~~~~~~~fD~i~~~~~l~~~~~ 116 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGKFNVVKSDA---IEYLKSLPDKYLDGVMISHFVEHLDP 116 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTTSEEECSCH---HHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhhcceeeccH---HHHhhhcCCCCeeEEEECCchhhCCc
Confidence 34789999999999654221 226689999999999999999899999998 554 778899999999999999985
Q ss_pred H--HHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCC--CchhHhHHHHHHHhCCCCCCceeeccC
Q 021661 224 P--IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGD--ADHVMIVGAYFHYAGGYEPPQAVDISP 290 (309)
Q Consensus 224 ~--~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~--~~h~~~~~~~f~~~~Gf~~~~~~~~~~ 290 (309)
+ ..+++++.++|||||.+++++++...+......|..... .-....+.+.+ ..+||+.+++....+
T Consensus 117 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~aGf~~~~~~~~~~ 186 (240)
T 3dli_A 117 ERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFIL-EYLGFRDVKIEFFEE 186 (240)
T ss_dssp GGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHH-HHHTCEEEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHH-HHCCCeEEEEEEecc
Confidence 4 999999999999999999999886655555444432211 11123344455 458999877776653
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.7e-18 Score=149.32 Aligned_cols=149 Identities=15% Similarity=0.257 Sum_probs=107.5
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC-----CcEEEecCCCCCCCCCCCC
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL-----TEYVVQDLNLNPKLPFEDN 207 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~-----i~~~~~D~~~~~~lp~~~~ 207 (309)
+.+.+...+++ +.+|||||||+|..... +..+.+|+|+|+|+.|++.++++ ++++++|+ ..++++++
T Consensus 43 ~~~~l~~~~~~----~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~ 115 (242)
T 3l8d_A 43 IIPFFEQYVKK----EAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDL---SSLPFENE 115 (242)
T ss_dssp HHHHHHHHSCT----TCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBT---TBCSSCTT
T ss_pred HHHHHHHHcCC----CCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcch---hcCCCCCC
Confidence 34555566653 78999999999954321 22267999999999999988664 78999999 88888889
Q ss_pred ceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHH--HhhhhhcCCCC---chhHhHHHHHHHhCCCCC
Q 021661 208 SFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK--AISIWTSTGDA---DHVMIVGAYFHYAGGYEP 282 (309)
Q Consensus 208 sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~--~~~~w~~~~~~---~h~~~~~~~f~~~~Gf~~ 282 (309)
+||+|++..+++|++++..+++++.++|||||.+++.+.++..... .+..+...... -....+.+.+ ..+||+.
T Consensus 116 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~ 194 (242)
T 3l8d_A 116 QFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNTMMPWEFEQLV-KEQGFKV 194 (242)
T ss_dssp CEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGGGGGGTCCCSSCCCCHHHHHHHH-HHTTEEE
T ss_pred CccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhhhhhccccccccCCCHHHHHHHH-HHcCCEE
Confidence 9999999999999999999999999999999999998765432211 11111111111 1112334445 5699998
Q ss_pred CceeeccC
Q 021661 283 PQAVDISP 290 (309)
Q Consensus 283 ~~~~~~~~ 290 (309)
++...+..
T Consensus 195 ~~~~~~~~ 202 (242)
T 3l8d_A 195 VDGIGVYK 202 (242)
T ss_dssp EEEEEEEC
T ss_pred EEeecccc
Confidence 88776543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-18 Score=149.51 Aligned_cols=98 Identities=22% Similarity=0.266 Sum_probs=82.2
Q ss_pred CCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEecc-ch
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVV-SV 218 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~~-vl 218 (309)
++.+|||||||+|..... +..+.+|+|+|+|+.|++.+++ +++++++|+ ..++++ ++||+|++.. ++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~-~~fD~v~~~~~~l 112 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI---SNLNIN-RKFDLITCCLDST 112 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCG---GGCCCS-CCEEEEEECTTGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEeccc---ccCCcc-CCceEEEEcCccc
Confidence 478999999999854322 2225699999999999998765 478999999 777766 7899999998 99
Q ss_pred hcc---CCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 219 DYL---TKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 219 ~~l---~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
+|+ .++.++|+++.++|||||.++++++++.
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 146 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYY 146 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHH
Confidence 999 5678999999999999999999888754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=152.82 Aligned_cols=150 Identities=21% Similarity=0.271 Sum_probs=106.9
Q ss_pred CCCeEEEECCCcchhcc----CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHFP----PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~----~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
++.+|||||||+|.... ...++.+|+|+|+|+.|++.++++ ++++++|+ .+++++ ++||+|++
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~v~~ 193 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDA---WKLDTR-EGYDLLTS 193 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCG---GGCCCC-SCEEEEEC
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECch---hcCCcc-CCeEEEEE
Confidence 47899999999996443 345678999999999999987642 78999999 788877 89999999
Q ss_pred ccchhccCCHHH---HHHHHHhhcccCcEEEEEecCcchhHHHhhhhh-----------------cC--C---CCchhHh
Q 021661 215 VVSVDYLTKPIE---VFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWT-----------------ST--G---DADHVMI 269 (309)
Q Consensus 215 ~~vl~~l~d~~~---~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~-----------------~~--~---~~~h~~~ 269 (309)
+.+++|++++.. +++++.++|||||.+++..............|. .. . .......
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (305)
T 3ocj_A 194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQ 273 (305)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHH
T ss_pred CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHH
Confidence 999999998876 799999999999999988654321111111111 00 0 1112333
Q ss_pred HHHHHHHhCCCCCCceeeccCCCCCCCCcEEEEEEeCC
Q 021661 270 VGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 270 ~~~~f~~~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
+.+.+ +.+||+.+++.... ......++|+|++
T Consensus 274 ~~~~l-~~aGF~~v~~~~~~-----~~~~~~v~a~Kpa 305 (305)
T 3ocj_A 274 TRAQL-EEAGFTDLRFEDDR-----ARLFPTVIARKPA 305 (305)
T ss_dssp HHHHH-HHTTCEEEEEECCT-----TSSSCEEEEECCC
T ss_pred HHHHH-HHCCCEEEEEEccc-----CceeeEEEEecCC
Confidence 44455 55999987766522 2345678899863
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.4e-17 Score=139.61 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=107.8
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCC-CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHH
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPV-LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEV 227 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~-~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~ 227 (309)
+.+|||||||+|......... +|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++..+++|++++..+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~---~~vD~s~~~~~~a~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~~~~~~~~ 121 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK---IGVEPSERMAEIARKRGVFVLKGTA---ENLPLKDESFDFALMVTTICFVDDPERA 121 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC---EEEESCHHHHHHHHHTTCEEEECBT---TBCCSCTTCEEEEEEESCGGGSSCHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHH---hccCCCHHHHHHHHhcCCEEEEccc---ccCCCCCCCeeEEEEcchHhhccCHHHH
Confidence 679999999998654332222 999999999998876 489999999 7888888899999999999999999999
Q ss_pred HHHHHhhcccCcEEEEEecCcc-hhHHHhhhhhc-CCCCc-----hhHhHHHHHHHhCCCCCCceeeccCCC--------
Q 021661 228 FKEMCQVLKPGGLAIVSFSNRC-FWTKAISIWTS-TGDAD-----HVMIVGAYFHYAGGYEPPQAVDISPNP-------- 292 (309)
Q Consensus 228 l~~i~rvLkpGG~lii~~~~~~-~~~~~~~~w~~-~~~~~-----h~~~~~~~f~~~~Gf~~~~~~~~~~~~-------- 292 (309)
|+++.++|||||.+++.+++.. .+...+..... ..... ....+.+.+ ..+||+.+++......+
T Consensus 122 l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~Gf~~~~~~~~~~~~p~~~~~~~ 200 (219)
T 1vlm_A 122 LKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLM-RKAGFEEFKVVQTLFKHPSELSEIE 200 (219)
T ss_dssp HHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHH-HHTTCEEEEEEEECCSCGGGCSSCC
T ss_pred HHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHH-HHCCCeEEEEecccCCCCCccccch
Confidence 9999999999999999877643 22222221110 00111 123334445 45899988776653221
Q ss_pred -----CCCCCcEEEEEEeC
Q 021661 293 -----GRSDPMYVVYSRKA 306 (309)
Q Consensus 293 -----~~~~p~~~v~a~k~ 306 (309)
...-.+++++|+|.
T Consensus 201 ~~~~~~~~~~~~~i~a~K~ 219 (219)
T 1vlm_A 201 PVKEGYGEGAFVVIRGTKK 219 (219)
T ss_dssp CCEESSSSSSEEEEEEECC
T ss_pred hhhcCCCCCeEEEEEecCC
Confidence 01114688899884
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=147.64 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=104.5
Q ss_pred CCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||||||+|.... ...+..+|+|+|+|+.|++.+++ +++++++|+ .++++++++||+|++.
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~i~~~ 121 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM---DDLPFRNEELDLIWSE 121 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCCCTTCEEEEEES
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcCh---hhCCCCCCCEEEEEEc
Confidence 568899999999995432 22256799999999999987764 288999999 8888888999999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecC---cchhHHHhhhhhcC-CCCchhHhHHHHHHHhCCCCCCceeeccCC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---RCFWTKAISIWTST-GDADHVMIVGAYFHYAGGYEPPQAVDISPN 291 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~---~~~~~~~~~~w~~~-~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~ 291 (309)
.+++|+ ++..+++++.++|||||.+++..+. ..........|... ........+.+.+ .++||+.+++..+...
T Consensus 122 ~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~v~~~~~~~~ 199 (267)
T 3kkz_A 122 GAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWMDAYPEIDTIPNQVAKI-HKAGYLPVATFILPEN 199 (267)
T ss_dssp SCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCEEHHHHHHHH-HHTTEEEEEEEECCGG
T ss_pred CCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHHHHHHhCCCCCCHHHHHHHH-HHCCCEEEEEEECCHh
Confidence 999999 8999999999999999999887653 22223334445321 2222333444445 5699998888776543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=144.44 Aligned_cols=147 Identities=18% Similarity=0.203 Sum_probs=106.9
Q ss_pred CCCCeEEEECCCcchhcc---CC-CCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP---PG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~-~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|.... .. .+..+|+|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~ 112 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEE---NKIPLPDNTVDFIFM 112 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBT---TBCSSCSSCEEEEEE
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeccc---ccCCCCCCCeeEEEe
Confidence 457899999999885432 22 256799999999999987765 378999999 788888899999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCCC
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGR 294 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~ 294 (309)
..+++|++++..+++++.++|||||.+++............ .+. ..-...-+.+.+ ..+||+.++.....+
T Consensus 113 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-~~~---~~~~~~~~~~~l-~~~Gf~~~~~~~~~~---- 183 (219)
T 3dh0_A 113 AFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP-PPE---EVYSEWEVGLIL-EDAGIRVGRVVEVGK---- 183 (219)
T ss_dssp ESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-CGG---GSCCHHHHHHHH-HHTTCEEEEEEEETT----
T ss_pred ehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCC-chh---cccCHHHHHHHH-HHCCCEEEEEEeeCC----
Confidence 99999999999999999999999998888754422110000 000 000122333444 558999887766543
Q ss_pred CCCcEEEEEEeCC
Q 021661 295 SDPMYVVYSRKAS 307 (309)
Q Consensus 295 ~~p~~~v~a~k~~ 307 (309)
..+.++++|+.
T Consensus 184 --~~~~~~~~k~~ 194 (219)
T 3dh0_A 184 --YCFGVYAMIVK 194 (219)
T ss_dssp --TEEEEEEECC-
T ss_pred --ceEEEEEEecc
Confidence 56888888874
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=149.60 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCC
Q 021661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLN 197 (309)
Q Consensus 129 ~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~ 197 (309)
.....+.+.+.+.++. .++.+|||||||+|...... ..+.+|+|+|+|+.|++.+++ +++++++|+
T Consensus 44 ~~~~~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~- 120 (273)
T 3bus_A 44 DATDRLTDEMIALLDV--RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADA- 120 (273)
T ss_dssp HHHHHHHHHHHHHSCC--CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT-
T ss_pred HHHHHHHHHHHHhcCC--CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECcc-
Confidence 3344555666666653 56789999999999543221 126799999999999987754 378999999
Q ss_pred CCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCc--c---hhHHHhhhhhc---CCCCchhHh
Q 021661 198 LNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR--C---FWTKAISIWTS---TGDADHVMI 269 (309)
Q Consensus 198 ~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~--~---~~~~~~~~w~~---~~~~~h~~~ 269 (309)
.++|+++++||+|++..+++|++++..+|+++.++|||||.+++..... . ........|.. .........
T Consensus 121 --~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (273)
T 3bus_A 121 --MDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDE 198 (273)
T ss_dssp --TSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHH
T ss_pred --ccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCChhHHHHHHHHHhhcCccCCCCHHH
Confidence 8888888999999999999999999999999999999999888875431 1 11112222211 112222333
Q ss_pred HHHHHHHhCCCCCCceeecc
Q 021661 270 VGAYFHYAGGYEPPQAVDIS 289 (309)
Q Consensus 270 ~~~~f~~~~Gf~~~~~~~~~ 289 (309)
+.+.+ .++||+.+++....
T Consensus 199 ~~~~l-~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 199 YESDV-RQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHH-HHTTCEEEEEEECH
T ss_pred HHHHH-HHcCCeEEEEEECc
Confidence 44455 45899987776653
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-17 Score=150.22 Aligned_cols=166 Identities=12% Similarity=0.115 Sum_probs=105.6
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchhccC-CCCCC-eEEEEeCCHHHHhhCCCC-------------------------
Q 021661 136 KYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQD-RIVGMGMNEEELKRNPVL------------------------- 188 (309)
Q Consensus 136 ~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~~~~~-~v~giD~S~~~l~~a~~~------------------------- 188 (309)
+.+.+.+.....++.+|||||||+|..... +..+. +|+|+|+|+.|++.++++
T Consensus 43 ~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~ 122 (263)
T 2a14_A 43 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSG 122 (263)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGG
T ss_pred HHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCc
Confidence 334444432235578999999999855433 33343 799999999999976531
Q ss_pred ------------C-cEEEecCCCCCC-CCC---CCCceeEEEeccchhcc----CCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 189 ------------T-EYVVQDLNLNPK-LPF---EDNSFDVITNVVSVDYL----TKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 189 ------------i-~~~~~D~~~~~~-lp~---~~~sfDlVis~~vl~~l----~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+ .++++|+ .. .|+ ..++||+|+++++|||+ ++..+++++++++|||||.|+++...
T Consensus 123 ~~~~~~~~~~~~i~~~~~~D~---~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 123 RWEEKEEKLRAAVKRVLKCDV---HLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp GHHHHHHHHHHHEEEEEECCT---TSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred chhhHHHHHHhhhheEEeccc---cCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 1 2889998 44 343 35789999999999996 34578999999999999999888532
Q ss_pred -cchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC----CCCCCcEEEEEEeCC
Q 021661 248 -RCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP----GRSDPMYVVYSRKAS 307 (309)
Q Consensus 248 -~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~----~~~~p~~~v~a~k~~ 307 (309)
...+...-..|.. ..-....+.+.+ .++||+..++....... .+..+++.++|||..
T Consensus 200 ~~~~~~~g~~~~~~--~~~~~~~l~~~l-~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 261 (263)
T 2a14_A 200 RLPSYMVGKREFSC--VALEKGEVEQAV-LDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 261 (263)
T ss_dssp SCCEEEETTEEEEC--CCCCHHHHHHHH-HHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred cCccceeCCeEeec--cccCHHHHHHHH-HHCCCEEEEEeecccccccccCCCCceEEEEEEecC
Confidence 1111000000100 000122334444 45999987776543111 123478999999974
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=148.60 Aligned_cols=96 Identities=23% Similarity=0.343 Sum_probs=81.3
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|.... .+....+|+|+|+|+.|++.+++ +++++++|+ +.+|+++++||+|++..+
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~l~~~~~~fD~V~~~~~ 112 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQMPFTDERFHIVTCRIA 112 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH---HhCCCCCCCEEEEEEhhh
Confidence 457899999999985432 12223599999999999998764 378999999 889998899999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
++|++|+..+|+++.++|||||.+++..
T Consensus 113 l~~~~d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 113 AHHFPNPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hHhcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999999999999999999999888764
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=141.57 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=81.8
Q ss_pred CeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 150 VSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 150 ~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
.+|||||||+|...... .++.+|+|+|+|+.|++.++++ ++++++|+ .++++++++||+|++..++
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~~~~l 121 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDV---HNIPIEDNYADLIVSRGSV 121 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBT---TBCSSCTTCEEEEEEESCG
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCH---HHCCCCcccccEEEECchH
Confidence 39999999999543211 2567999999999999877653 78999999 8888888999999999999
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+|++++..+++++.++|||||.+++....
T Consensus 122 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 122 FFWEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred hhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 99999999999999999999999887543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.2e-18 Score=152.02 Aligned_cols=97 Identities=14% Similarity=0.273 Sum_probs=83.4
Q ss_pred CCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCC-CCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-FEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp-~~~~sfDlVis~~v 217 (309)
+.+|||||||+|..... +..+.+|+|+|+|+.|++.+++ +++++++|+ ..++ +.+++||+|++..+
T Consensus 69 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~fD~v~~~~~ 145 (285)
T 4htf_A 69 KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA---QDVASHLETPVDLILFHAV 145 (285)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCG---GGTGGGCSSCEEEEEEESC
T ss_pred CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCH---HHhhhhcCCCceEEEECch
Confidence 67999999999954322 2226799999999999998764 377999999 7776 67889999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++|++++..+|+++.++|||||.+++.+++.
T Consensus 146 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (285)
T 4htf_A 146 LEWVADPRSVLQTLWSVLRPGGVLSLMFYNA 176 (285)
T ss_dssp GGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred hhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence 9999999999999999999999999988764
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.5e-17 Score=146.15 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=104.4
Q ss_pred CCCCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|.... ...+ .+|+|+|+|+.|++.++++ ++++++|+ ..+|+++++||+|++
T Consensus 45 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~ 120 (257)
T 3f4k_A 45 TDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM---DNLPFQNEELDLIWS 120 (257)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCSSCTTCEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhCCCCCCCEEEEEe
Confidence 457899999999995432 2222 4999999999999987653 78999999 888988899999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecC---cchhHHHhhhhhcCC-CCchhHhHHHHHHHhCCCCCCceeeccC
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---RCFWTKAISIWTSTG-DADHVMIVGAYFHYAGGYEPPQAVDISP 290 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~---~~~~~~~~~~w~~~~-~~~h~~~~~~~f~~~~Gf~~~~~~~~~~ 290 (309)
..+++|+ ++..+++++.++|||||.+++..++ ..........|.... .......+.+.+ .++||+.++......
T Consensus 121 ~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~v~~~~~~~ 198 (257)
T 3f4k_A 121 EGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKM-ERAGYTPTAHFILPE 198 (257)
T ss_dssp ESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHHCTTCCBHHHHHHHH-HHTTEEEEEEEECCG
T ss_pred cChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHhCCCCCCHHHHHHHH-HHCCCeEEEEEECCh
Confidence 9999999 8999999999999999999887643 222233334454321 122233344445 569999888777654
Q ss_pred CCC
Q 021661 291 NPG 293 (309)
Q Consensus 291 ~~~ 293 (309)
..+
T Consensus 199 ~~w 201 (257)
T 3f4k_A 199 NCW 201 (257)
T ss_dssp GGT
T ss_pred hhH
Confidence 443
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.1e-17 Score=139.36 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=80.0
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC-------------CCcEEEecCCCCCCCCCCCCceeE
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~-------------~i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
++.+|||||||+|... ....+..+|+|+|+|+.|++.+++ +++++++|+ ..++.++++||+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~ 105 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL---VYRDKRFSGYDA 105 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS---SSCCGGGTTCSE
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc---cccccccCCCCE
Confidence 3679999999999543 333455799999999999998765 478999999 777877889999
Q ss_pred EEeccchhccCCH--HHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|++..+++|++++ .++++++.++|||||.+++ +++
T Consensus 106 V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~-~~~ 142 (219)
T 3jwg_A 106 ATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVS-TPN 142 (219)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEE-EEB
T ss_pred EEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEE-ccc
Confidence 9999999999866 7999999999999995544 444
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.71 E-value=7.3e-18 Score=152.87 Aligned_cols=153 Identities=12% Similarity=0.117 Sum_probs=98.5
Q ss_pred CCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC-------------------------------------
Q 021661 148 PGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL------------------------------------- 188 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~------------------------------------- 188 (309)
++.+|||||||+|...... .++.+|+|+|+|+.|++.++++
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 4789999999999743322 2466999999999999876541
Q ss_pred -CcEEEecCCCCCC-CCC-----CCCceeEEEeccchhc----cCCHHHHHHHHHhhcccCcEEEEEecC-cchhHHHhh
Q 021661 189 -TEYVVQDLNLNPK-LPF-----EDNSFDVITNVVSVDY----LTKPIEVFKEMCQVLKPGGLAIVSFSN-RCFWTKAIS 256 (309)
Q Consensus 189 -i~~~~~D~~~~~~-lp~-----~~~sfDlVis~~vl~~----l~d~~~~l~~i~rvLkpGG~lii~~~~-~~~~~~~~~ 256 (309)
++++++|+ .. +|+ ++++||+|+++++++| ++++.++|++++++|||||.|++.... ..++... .
T Consensus 151 ~~~~~~~D~---~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~-~ 226 (289)
T 2g72_A 151 VKRVLPIDV---HQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG-E 226 (289)
T ss_dssp EEEEECCCT---TSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET-T
T ss_pred hceEEeccc---CCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcC-C
Confidence 23566688 55 553 4567999999999999 567899999999999999988876321 1110000 0
Q ss_pred hhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCC----C--CCCCCcEEEEEEeC
Q 021661 257 IWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPN----P--GRSDPMYVVYSRKA 306 (309)
Q Consensus 257 ~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~----~--~~~~p~~~v~a~k~ 306 (309)
. ......-....+.+.+ ..+||+.+++...... . -..+.++.|.++|.
T Consensus 227 ~-~~~~~~~~~~~l~~~l-~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (289)
T 2g72_A 227 A-RLTVVPVSEEEVREAL-VRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKV 280 (289)
T ss_dssp E-EEECCCCCHHHHHHHH-HHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEEC
T ss_pred e-eeeeccCCHHHHHHHH-HHcCCeEEEeeEeeccccccccccCcceEEEEEEecc
Confidence 0 0000011123344455 4599998877665421 1 12345566666664
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=151.98 Aligned_cols=137 Identities=18% Similarity=0.114 Sum_probs=100.1
Q ss_pred CCCCeEEEECCCcchhccCCC--CCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFPPGY--KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~~--~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||||||+|....... .+.+|+|+|+|+.|++.+++ +++++++|+ ..+|+++++||+|++.
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~ 157 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEIPCEDNSYDFIWSQ 157 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSCSSCTTCEEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc---ccCCCCCCCEeEEEec
Confidence 457899999999995432221 15699999999999987754 378999999 8899888999999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCcc------hhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC------FWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~------~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
.+++|++++..+|+++.++|||||.+++..+... .....+..+.. ........+.+.+ ..+||+.+++..+
T Consensus 158 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l-~~aGf~~~~~~~~ 234 (297)
T 2o57_A 158 DAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL-HDMGSLGLYRSLA-KECGLVTLRTFSR 234 (297)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTC-SSCCCHHHHHHHH-HHTTEEEEEEEEC
T ss_pred chhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcC-CCCCCHHHHHHHH-HHCCCeEEEEEEC
Confidence 9999999999999999999999999888765321 11222222211 1122233444455 4588988776654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=143.78 Aligned_cols=108 Identities=21% Similarity=0.311 Sum_probs=85.9
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCC
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFED 206 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~ 206 (309)
+.+.+.+.+++ +.+|||||||+|..........+|+|+|+|+.|++.+++ +++++++|+ .+++++
T Consensus 23 ~~~~~~~~~~~----~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~- 94 (243)
T 3d2l_A 23 WVAWVLEQVEP----GKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDM---RELELP- 94 (243)
T ss_dssp HHHHHHHHSCT----TCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCG---GGCCCS-
T ss_pred HHHHHHHHcCC----CCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEEEEcCh---hhcCCC-
Confidence 34555566654 689999999999644322222799999999999998765 378999999 677765
Q ss_pred CceeEEEecc-chhccC---CHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 207 NSFDVITNVV-SVDYLT---KPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 207 ~sfDlVis~~-vl~~l~---d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
++||+|++.. +++|+. ++..+++++.++|||||.++++++++.
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 141 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPY 141 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHH
Confidence 7899999987 999994 567899999999999999999887653
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.70 E-value=5e-17 Score=144.07 Aligned_cols=136 Identities=18% Similarity=0.081 Sum_probs=97.4
Q ss_pred CCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||||||+|...... ..+.+|+|+|+|+.|++.+++ +++++++|+ .++++ +++||+|++.
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~---~~~~~-~~~fD~V~~~ 110 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AGYVA-NEKCDVAACV 110 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TTCCC-SSCEEEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh---HhCCc-CCCCCEEEEC
Confidence 45789999999999543211 125699999999999987753 478999999 77877 7889999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCc---chhHHHhhhhhcCC--CCchhHhHHHHHHHhCCCCCCceee
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR---CFWTKAISIWTSTG--DADHVMIVGAYFHYAGGYEPPQAVD 287 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~---~~~~~~~~~w~~~~--~~~h~~~~~~~f~~~~Gf~~~~~~~ 287 (309)
.+++|++++.++|+++.++|||||.+++..+.. .........|.... .......+.+.+ .++||+.+++..
T Consensus 111 ~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~~~ 186 (256)
T 1nkv_A 111 GATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAF-DDLGYDVVEMVL 186 (256)
T ss_dssp SCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHH-HTTTBCCCEEEE
T ss_pred CChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHHHHHHhcccccccCCHHHHHHHH-HHCCCeeEEEEe
Confidence 999999999999999999999999998875431 11122222333111 111122233344 569999887654
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-17 Score=150.09 Aligned_cols=138 Identities=13% Similarity=0.207 Sum_probs=96.6
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC-------------------------------------
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------------------------------- 187 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------------------------------- 187 (309)
++.+|||||||+|... ....+..+|+|+|+|+.|++.|++
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 4789999999999543 333567799999999999987653
Q ss_pred -----------------------------CCcEEEecCCCCCCCC-----CCCCceeEEEeccchhccC------CHHHH
Q 021661 188 -----------------------------LTEYVVQDLNLNPKLP-----FEDNSFDVITNVVSVDYLT------KPIEV 227 (309)
Q Consensus 188 -----------------------------~i~~~~~D~~~~~~lp-----~~~~sfDlVis~~vl~~l~------d~~~~ 227 (309)
+++|+++|+ ...+ +.+++||+|+|..+++|+. ++.++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~---~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~ 202 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNY---VLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM 202 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCC---CCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEeccc---ccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence 477888888 4333 4678999999999998885 67899
Q ss_pred HHHHHhhcccCcEEEEEecCcchhH-------HHhhhhhcCCCCchhHhHHHHHHH-hCCCCCCceeeccC
Q 021661 228 FKEMCQVLKPGGLAIVSFSNRCFWT-------KAISIWTSTGDADHVMIVGAYFHY-AGGYEPPQAVDISP 290 (309)
Q Consensus 228 l~~i~rvLkpGG~lii~~~~~~~~~-------~~~~~w~~~~~~~h~~~~~~~f~~-~~Gf~~~~~~~~~~ 290 (309)
|++++++|||||.|+++..+...+. .....+....- ...-+.+++.. ..||+.++++....
T Consensus 203 l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~--~p~~~~~~L~~~~~GF~~~~~~~~~~ 271 (292)
T 3g07_A 203 FRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQL--KPEQFSSYLTSPDVGFSSYELVATPH 271 (292)
T ss_dssp HHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCC--CGGGHHHHHTSTTTCCCEEEEC----
T ss_pred HHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEE--cHHHHHHHHHhcCCCceEEEEeccCC
Confidence 9999999999999999866533221 11112221111 12344556643 48999988888643
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.5e-17 Score=149.18 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=83.4
Q ss_pred CCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCC---CCCCceeE
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLP---FEDNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp---~~~~sfDl 211 (309)
++.+|||||||+|..... +..+.+|+|+|+|+.|++.+++ ++.+.++|+ ..++ +++++||+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~fD~ 133 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANW---LTLDKDVPAGDGFDA 133 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCG---GGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecCh---hhCccccccCCCeEE
Confidence 368999999999964322 2225699999999999998854 267889998 7777 77889999
Q ss_pred EEec-cchhccCC-------HHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 212 ITNV-VSVDYLTK-------PIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 212 Vis~-~vl~~l~d-------~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
|++. .+++|+++ +.+++++++++|||||.+++++++..
T Consensus 134 V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 179 (293)
T 3thr_A 134 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD 179 (293)
T ss_dssp EEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred EEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHH
Confidence 9998 89999999 99999999999999999999988754
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=140.77 Aligned_cols=146 Identities=15% Similarity=0.112 Sum_probs=103.4
Q ss_pred CCCeEEEECCCcchhccC-CCC-CCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHFPP-GYK-QDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~-~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
++.+|||||||+|..... +.. ..+|+|+|+|+.|++.++++ ++++++|+ ..+++++++||+|++..+
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~ 155 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL---QDFTPEPDSYDVIWIQWV 155 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG---GGCCCCSSCEEEEEEESC
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcCh---hhcCCCCCCEEEEEEcch
Confidence 578999999999965432 222 45999999999999987653 67899998 778877889999999999
Q ss_pred hhccCCHH--HHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCC--chhHhHHHHHHHhCCCCCCceeeccCCCC
Q 021661 218 VDYLTKPI--EVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDA--DHVMIVGAYFHYAGGYEPPQAVDISPNPG 293 (309)
Q Consensus 218 l~~l~d~~--~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~--~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~ 293 (309)
++|++++. .+|+++.++|||||.+++..+.... -..|...... ....-+.+.+ .++||+.+++......+.
T Consensus 156 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~~~~~~~~~ 230 (241)
T 2ex4_A 156 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE----GVILDDVDSSVCRDLDVVRRII-CSAGLSLLAEERQENLPD 230 (241)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS----SEEEETTTTEEEEBHHHHHHHH-HHTTCCEEEEEECCSCCT
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC----cceecccCCcccCCHHHHHHHH-HHcCCeEEEeeecCCCcc
Confidence 99998854 9999999999999999887553221 0111111100 0233344455 458999888877655554
Q ss_pred CCCCcEEE
Q 021661 294 RSDPMYVV 301 (309)
Q Consensus 294 ~~~p~~~v 301 (309)
..-|+.+.
T Consensus 231 ~~~~v~~~ 238 (241)
T 2ex4_A 231 EIYHVYSF 238 (241)
T ss_dssp TSCEEEEE
T ss_pred hhhhhhhh
Confidence 44555443
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.8e-17 Score=140.73 Aligned_cols=107 Identities=21% Similarity=0.259 Sum_probs=86.3
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCC
Q 021661 136 KYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFED 206 (309)
Q Consensus 136 ~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~ 206 (309)
+.+...++. ..++.+|||||||+|... ....++.+|+|+|+|+.|++.+++ +++++++|+ ..++++
T Consensus 33 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~- 107 (234)
T 3dtn_A 33 GVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADY---SKYDFE- 107 (234)
T ss_dssp HHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCT---TTCCCC-
T ss_pred HHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCch---hccCCC-
Confidence 334444442 345789999999998543 334568899999999999987765 478999999 788876
Q ss_pred CceeEEEeccchhccCCHH--HHHHHHHhhcccCcEEEEEecC
Q 021661 207 NSFDVITNVVSVDYLTKPI--EVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 207 ~sfDlVis~~vl~~l~d~~--~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++||+|++..+++|++++. .+++++.++|||||.+++....
T Consensus 108 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 150 (234)
T 3dtn_A 108 EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLV 150 (234)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 8899999999999998765 5999999999999998887644
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-16 Score=142.89 Aligned_cols=107 Identities=12% Similarity=0.129 Sum_probs=87.5
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCCCCCCCceeE
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
.+.+.+.++. .++.+|||||||+|.... .+.++.+|+|+|+|+.|++.++++ ++++++|+ +.+|+++++||+
T Consensus 23 ~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~---~~~~~~~~~fD~ 97 (261)
T 3ege_A 23 VNAIINLLNL--PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYA---ENLALPDKSVDG 97 (261)
T ss_dssp HHHHHHHHCC--CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCT---TSCCSCTTCBSE
T ss_pred HHHHHHHhCC--CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECch---hhCCCCCCCEeE
Confidence 3344444432 457899999999995432 223678999999999999988774 88999999 888988899999
Q ss_pred EEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|++..+++|++++..++++++++|| ||.+++...+
T Consensus 98 v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 98 VISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp EEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred EEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 9999999999999999999999999 9966655444
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=141.41 Aligned_cols=154 Identities=12% Similarity=0.085 Sum_probs=105.7
Q ss_pred CCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCC---CCCC-CceeEEEeccchhc
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKL---PFED-NSFDVITNVVSVDY 220 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~l---p~~~-~sfDlVis~~vl~~ 220 (309)
++.+|||||||+|..... +..+.+|+|+|+|+.|++.++++ +.+.+.|+ .++ ++.. ++||+|++..+++
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~fD~v~~~~~l~- 127 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASY---AQLAEAKVPVGKDYDLICANFALL- 127 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCH---HHHHTTCSCCCCCEEEEEEESCCC-
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhH---HhhcccccccCCCccEEEECchhh-
Confidence 368999999999954322 22267999999999999988764 78888888 554 4444 4599999999999
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecCcchhHH--Hhhhh-----hcCCCC---c-----hhHhHHHHHHHhCCCCCCce
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTK--AISIW-----TSTGDA---D-----HVMIVGAYFHYAGGYEPPQA 285 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~--~~~~w-----~~~~~~---~-----h~~~~~~~f~~~~Gf~~~~~ 285 (309)
..++..+++++.++|||||.+++..+++..... ....| ...... . ...-+.+.+ ..+||+.+++
T Consensus 128 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~ 206 (227)
T 3e8s_A 128 HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNAL-DMAGLRLVSL 206 (227)
T ss_dssp SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHH-HHTTEEEEEE
T ss_pred hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHH-HHcCCeEEEE
Confidence 889999999999999999999999876532211 11112 111110 0 122333344 5699998777
Q ss_pred eeccCCCCCCCCcEEEEEEeC
Q 021661 286 VDISPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 286 ~~~~~~~~~~~p~~~v~a~k~ 306 (309)
........+....++++++|+
T Consensus 207 ~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 207 QEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp ECCCCTTCSSCSCEEEEEEEC
T ss_pred ecCCCCCCCCceeEEEEeecC
Confidence 763332222334588888874
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-17 Score=145.05 Aligned_cols=138 Identities=14% Similarity=0.153 Sum_probs=100.2
Q ss_pred CCCCeEEEECCCcchhccCCC--CCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHFPPGY--KQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~~--~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
.++.+|||||||+|....... .+.+|+|+|+|+.|++.+++ +++++++|+ ..+|+++++||+|++..++
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l 130 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDI---LTKEFPENNFDLIYSRDAI 130 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCT---TTCCCCTTCEEEEEEESCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc---ccCCCCCCcEEEEeHHHHH
Confidence 567899999999995432221 16799999999999987764 478999999 7888888999999999999
Q ss_pred hcc--CCHHHHHHHHHhhcccCcEEEEEecCcc---hhHHHhhhhhc--CCCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 219 DYL--TKPIEVFKEMCQVLKPGGLAIVSFSNRC---FWTKAISIWTS--TGDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 219 ~~l--~d~~~~l~~i~rvLkpGG~lii~~~~~~---~~~~~~~~w~~--~~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
+|+ .++..+++++.++|||||.+++..+... .+...+..+.. .........+.+.+ ..+||+.+++...
T Consensus 131 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~~~~~~~ 206 (266)
T 3ujc_A 131 LALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADIL-TACNFKNVVSKDL 206 (266)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHHHTCCCCCHHHHHHHH-HHTTCEEEEEEEC
T ss_pred HhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhcCCCCCCCHHHHHHHH-HHcCCeEEEEEeC
Confidence 999 7899999999999999999888764321 12222222111 11122233444455 4589998776654
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-17 Score=141.40 Aligned_cols=136 Identities=13% Similarity=0.050 Sum_probs=99.2
Q ss_pred CCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhccC--
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT-- 222 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~-- 222 (309)
++.+|||||||+|..... +..+.+|+|+|+|+.|++.+++ ++++.++|+ ..++ .+++||+|++..+++|++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLF---HQLD-AIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCG---GGCC-CCSCEEEEEECSCGGGSCHH
T ss_pred CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeee---ccCC-CCCcEEEEEecCchhhcCHH
Confidence 478999999999954322 1226799999999999998877 478999999 7777 678999999999999998
Q ss_pred CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCC-CCCCceeeccC
Q 021661 223 KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGG-YEPPQAVDISP 290 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~G-f~~~~~~~~~~ 290 (309)
++..+|+++.++|||||.+++.++....... ..+......-....+.+.+ ..+| |+.+++.....
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l-~~aG~f~~~~~~~~~~ 184 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGR--DKLARYYNYPSEEWLRARY-AEAGTWASVAVESSEG 184 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEE--CTTSCEECCCCHHHHHHHH-HHHCCCSEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCcccc--cccchhccCCCHHHHHHHH-HhCCCcEEEEEEeccC
Confidence 7889999999999999999998765321100 0000001111233344455 4589 99888776543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-16 Score=136.42 Aligned_cols=139 Identities=19% Similarity=0.269 Sum_probs=103.3
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCC--CCCCCCceeEEEeccchhc
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPK--LPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~--lp~~~~sfDlVis~~vl~~ 220 (309)
.++.+|||+|||+|... ... +.+|+|+|+|+.+++.++++ .+++++|+ .. +++++++||+|++..+++|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~fD~v~~~~~l~~ 105 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN--GTRVSGIEAFPEAAEQAKEKLDHVVLGDI---ETMDMPYEEEQFDCVIFGDVLEH 105 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT--TCEEEEEESSHHHHHHHHTTSSEEEESCT---TTCCCCSCTTCEEEEEEESCGGG
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCcEEEcch---hhcCCCCCCCccCEEEECChhhh
Confidence 34789999999998543 222 48999999999999998876 57899998 54 6677789999999999999
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhh----hhhcCC----CCch-----hHhHHHHHHHhCCCCCCceee
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAIS----IWTSTG----DADH-----VMIVGAYFHYAGGYEPPQAVD 287 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~----~w~~~~----~~~h-----~~~~~~~f~~~~Gf~~~~~~~ 287 (309)
++++..+++++.++|||||.+++++++...+..... .|.... ...| ...+.+.+ ..+||+.+++..
T Consensus 106 ~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Gf~~~~~~~ 184 (230)
T 3cc8_A 106 LFDPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMF-LKAGYSISKVDR 184 (230)
T ss_dssp SSCHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHH-HHTTEEEEEEEE
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHH-HHcCCeEEEEEe
Confidence 999999999999999999999999887654433222 222110 1111 22333344 558999887777
Q ss_pred ccCC
Q 021661 288 ISPN 291 (309)
Q Consensus 288 ~~~~ 291 (309)
....
T Consensus 185 ~~~~ 188 (230)
T 3cc8_A 185 VYVD 188 (230)
T ss_dssp EECC
T ss_pred cccC
Confidence 6544
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-17 Score=144.24 Aligned_cols=98 Identities=27% Similarity=0.437 Sum_probs=85.1
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||||||+|... ....++.+|+|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~ 112 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI---FSLPFEDSSFDHIFVC 112 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG---GGCCSCTTCEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEccc---ccCCCCCCCeeEEEEe
Confidence 45889999999998543 334567899999999999987754 478999999 7888888999999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.+++|++++..+++++.++|||||.+++..++
T Consensus 113 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 113 FVLEHLQSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred chhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 99999999999999999999999998887654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=141.05 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=83.3
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
.++.+|||||||+|.... .+..+.+|+|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++..++
T Consensus 38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADA---RAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCT---TSCCSCTTCEEEEEEESCG
T ss_pred CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEccc---ccCCCCCCCeeEEEECCch
Confidence 457899999999985432 12236799999999999987653 478999999 8888888999999999999
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+|++++..+++++.++|||||.+++.+..
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (263)
T 2yqz_A 115 HLVPDWPKVLAEAIRVLKPGGALLEGWDQ 143 (263)
T ss_dssp GGCTTHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHCCCCcEEEEEecC
Confidence 99999999999999999999988887543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-17 Score=143.77 Aligned_cols=97 Identities=19% Similarity=0.228 Sum_probs=82.7
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|.... .+....+|+|+|+|+.|++.+++ +++++++|+ +.+|+++++||+|++..+
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESLPFPDDSFDIITCRYA 96 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBCCSCTTCEEEEEEESC
T ss_pred CCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEeccc---ccCCCCCCcEEEEEECCc
Confidence 458899999999995432 22224599999999999987654 478999999 888988899999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++|++++..+++++.++|||||.+++...
T Consensus 97 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 97 AHHFSDVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhccCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 99999999999999999999998887644
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=139.46 Aligned_cols=97 Identities=24% Similarity=0.321 Sum_probs=82.0
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC-------------CCcEEEecCCCCCCCCCCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~-------------~i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
++.+|||||||+|.... .+..+.+|+|+|+|+.|++.+++ +++++++|+ ..+++++++||+|+
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENA---SSLSFHDSSFDFAV 106 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCT---TSCCSCTTCEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecc---cccCCCCCceeEEE
Confidence 37899999999985432 11226799999999999987765 258899999 78888889999999
Q ss_pred eccchhccCCHH---HHHHHHHhhcccCcEEEEEecC
Q 021661 214 NVVSVDYLTKPI---EVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 214 s~~vl~~l~d~~---~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+..+++|++++. .+++++.++|||||.+++....
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence 999999999988 9999999999999988887554
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.9e-16 Score=140.63 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=83.3
Q ss_pred CCCCeEEEECCCcchh---ccCCCC-CCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~-~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||||||+|.. +....+ +.+|+|+|+|+.|++.+++ +++++++|+ .+++++ ++||+|++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~v~~~ 96 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA---TEIELN-DKYDIAICH 96 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCT---TTCCCS-SCEEEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcch---hhcCcC-CCeeEEEEC
Confidence 4578999999999954 334445 4799999999999987654 478999999 778874 689999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.+++|++++..++++++++|||||.+++..++
T Consensus 97 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 97 AFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp SCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred ChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 99999999999999999999999999888776
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-17 Score=134.48 Aligned_cols=143 Identities=13% Similarity=0.026 Sum_probs=99.7
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC---CCcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~---~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
.++.+|||+|||+|...... ....+|+|+|+|+.+++.+++ +++++++| +++++++||+|++..+++|++
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d------~~~~~~~~D~v~~~~~l~~~~ 89 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP------KEIPDNSVDFILFANSFHDMD 89 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG------GGSCTTCEEEEEEESCSTTCS
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC------CCCCCCceEEEEEccchhccc
Confidence 34779999999988543221 112499999999999998865 47777776 456678999999999999999
Q ss_pred CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCCCCCCcEEEE
Q 021661 223 KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVY 302 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p~~~v~ 302 (309)
++..+++++.++|||||.+++..............+.. -...-+.+.+. ||+.++.....+ ..|.++
T Consensus 90 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~---Gf~~~~~~~~~~------~~~~l~ 156 (170)
T 3i9f_A 90 DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIR----MDEKDYMGWFS---NFVVEKRFNPTP------YHFGLV 156 (170)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGC----CCHHHHHHHTT---TEEEEEEECSST------TEEEEE
T ss_pred CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhh----cCHHHHHHHHh---CcEEEEccCCCC------ceEEEE
Confidence 99999999999999999888875542211000000000 01222333443 998777766543 558888
Q ss_pred EEeCCC
Q 021661 303 SRKAST 308 (309)
Q Consensus 303 a~k~~~ 308 (309)
++|.+.
T Consensus 157 ~~~~~~ 162 (170)
T 3i9f_A 157 LKRKTS 162 (170)
T ss_dssp EEECCC
T ss_pred EecCCC
Confidence 888753
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=137.63 Aligned_cols=110 Identities=14% Similarity=0.172 Sum_probs=87.6
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~ 205 (309)
.+...+...++. .++.+|||||||+|..... +..+.+|+|+|+|+.|++.+++ +++++++|+ .+++ +
T Consensus 38 ~~~~~l~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~-~ 111 (216)
T 3ofk_A 38 RHTQLLRLSLSS--GAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDI---LQFS-T 111 (216)
T ss_dssp HHHHHHHHHTTT--SSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCT---TTCC-C
T ss_pred HHHHHHHHHccc--CCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcch---hhCC-C
Confidence 444555555543 4578999999999954322 2224699999999999998765 378999999 7777 5
Q ss_pred CCceeEEEeccchhccCCH---HHHHHHHHhhcccCcEEEEEecCc
Q 021661 206 DNSFDVITNVVSVDYLTKP---IEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d~---~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+++||+|+++.+++|++++ .++++++.++|||||.++++++..
T Consensus 112 ~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 112 AELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp SCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 7889999999999999987 577999999999999999987754
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-16 Score=140.09 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=103.7
Q ss_pred CCCCeEEEECCCcchhccCC-CCCC-eEEEEeCCHHHHhhCCCC------------------------------------
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQD-RIVGMGMNEEELKRNPVL------------------------------------ 188 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~-~v~giD~S~~~l~~a~~~------------------------------------ 188 (309)
.++.+|||||||+|...... ..+. +|+|+|+|+.|++.++++
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 45789999999998654332 2333 899999999999977432
Q ss_pred -C-cEEEecCCCCCCCC-CCC---CceeEEEeccchh----ccCCHHHHHHHHHhhcccCcEEEEEecCcc-hhHHHhhh
Q 021661 189 -T-EYVVQDLNLNPKLP-FED---NSFDVITNVVSVD----YLTKPIEVFKEMCQVLKPGGLAIVSFSNRC-FWTKAISI 257 (309)
Q Consensus 189 -i-~~~~~D~~~~~~lp-~~~---~sfDlVis~~vl~----~l~d~~~~l~~i~rvLkpGG~lii~~~~~~-~~~~~~~~ 257 (309)
+ +++++|+ .+++ +++ ++||+|++..+++ ++.++..+|+++.++|||||.+++...... ++...-..
T Consensus 135 ~v~~~~~~d~---~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~ 211 (265)
T 2i62_A 135 AIKQVLKCDV---TQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQK 211 (265)
T ss_dssp HEEEEEECCT---TSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEE
T ss_pred hheeEEEeee---ccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcc
Confidence 5 8899998 5543 345 7899999999999 556788999999999999999888764321 11000000
Q ss_pred hhcCCCCchhHhHHHHHHHhCCCCCCceeeccCC----CCCCCCcEEEEEEeCCC
Q 021661 258 WTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPN----PGRSDPMYVVYSRKAST 308 (309)
Q Consensus 258 w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~----~~~~~p~~~v~a~k~~~ 308 (309)
+ ....-....+.+.+ ..+||+.+++...... ....+.++.++|+|.+.
T Consensus 212 ~--~~~~~~~~~~~~~l-~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~ 263 (265)
T 2i62_A 212 F--SSLPLGWETVRDAV-EEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGR 263 (265)
T ss_dssp E--ECCCCCHHHHHHHH-HHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC-
T ss_pred c--cccccCHHHHHHHH-HHCCCEEEEEEEecccCCccccccceEEEEEeccccc
Confidence 0 00001122344455 4589998777765421 11234678899999864
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=142.43 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=89.5
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCCC--cEEEecCCCCCCCCCCCCc
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVLT--EYVVQDLNLNPKLPFEDNS 208 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~i--~~~~~D~~~~~~lp~~~~s 208 (309)
..+.+.+...++ ++.+|||||||+|..... +..+.+|+|+|+|+.|++.++++. .++++|+ ..+++++++
T Consensus 42 ~~~~~~l~~~~~----~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~---~~~~~~~~~ 114 (260)
T 2avn_A 42 RLIGSFLEEYLK----NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKA---EDLPFPSGA 114 (260)
T ss_dssp HHHHHHHHHHCC----SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCT---TSCCSCTTC
T ss_pred HHHHHHHHHhcC----CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcH---HHCCCCCCC
Confidence 344556666654 378999999999964322 223679999999999999887653 4899999 788888899
Q ss_pred eeEEEeccchhcc-CCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 209 FDVITNVVSVDYL-TKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 209 fDlVis~~vl~~l-~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
||+|++..++.|+ .++..+|+++.++|||||.+++++++..
T Consensus 115 fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 115 FEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp EEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred EEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 9999999877666 7899999999999999999999988743
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=144.65 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=74.7
Q ss_pred CCCCeEEEECCCcchhc-------cCCCCCCeE--EEEeCCHHHHhhCCCC---------CcE--EEecCCCCCCCC---
Q 021661 147 TPGVSILDLCSSWVSHF-------PPGYKQDRI--VGMGMNEEELKRNPVL---------TEY--VVQDLNLNPKLP--- 203 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-------~~~~~~~~v--~giD~S~~~l~~a~~~---------i~~--~~~D~~~~~~lp--- 203 (309)
.++.+|||||||+|... ....+...| +|+|+|++|++.++++ +.+ .++++ ++++
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~ 127 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETS---SEYQSRM 127 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCH---HHHHHHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecch---hhhhhhh
Confidence 35679999999999421 122355644 9999999999976542 233 34444 3333
Q ss_pred ---CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 204 ---FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 204 ---~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+++++||+|++..+++|++|+.++|++++|+|||||.+++...+
T Consensus 128 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~ 174 (292)
T 2aot_A 128 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174 (292)
T ss_dssp HTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 45789999999999999999999999999999999988876554
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=148.35 Aligned_cols=139 Identities=17% Similarity=0.228 Sum_probs=101.1
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCC----------------CCcEEEecCCCCCCC----
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPV----------------LTEYVVQDLNLNPKL---- 202 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~----------------~i~~~~~D~~~~~~l---- 202 (309)
.++.+|||||||+|... ... .+..+|+|+|+|+.|++.+++ +++++++|+ .++
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~---~~l~~~~ 158 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFI---ENLATAE 158 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCT---TCGGGCB
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccH---HHhhhcc
Confidence 35789999999999533 222 257799999999999987663 578999999 676
Q ss_pred --CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCc--c---hhHHHhhhhhcC-CCCchhHhHHHHH
Q 021661 203 --PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR--C---FWTKAISIWTST-GDADHVMIVGAYF 274 (309)
Q Consensus 203 --p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~--~---~~~~~~~~w~~~-~~~~h~~~~~~~f 274 (309)
++++++||+|+++.+++|++++..+|+++.++|||||.++++.... . ........|... ...-...-+.+.+
T Consensus 159 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 238 (383)
T 4fsd_A 159 PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLV 238 (383)
T ss_dssp SCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHH
T ss_pred cCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHH
Confidence 8888999999999999999999999999999999999988875431 1 111111223221 1112233444455
Q ss_pred HHhCCCCCCceeecc
Q 021661 275 HYAGGYEPPQAVDIS 289 (309)
Q Consensus 275 ~~~~Gf~~~~~~~~~ 289 (309)
..+||+.++++...
T Consensus 239 -~~aGF~~v~~~~~~ 252 (383)
T 4fsd_A 239 -AEAGFRDVRLVSVG 252 (383)
T ss_dssp -HHTTCCCEEEEEEE
T ss_pred -HHCCCceEEEEecc
Confidence 55899988776653
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.5e-17 Score=155.23 Aligned_cols=150 Identities=11% Similarity=0.022 Sum_probs=103.5
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCC-CcEE-----EecCCCCCCCCC
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVL-TEYV-----VQDLNLNPKLPF 204 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~-i~~~-----~~D~~~~~~lp~ 204 (309)
..+.+.+.+.+.. .++.+|||||||+|..+... ..+.+|+|+|+|+.|++.|+++ +... ..++ +.+++
T Consensus 93 ~~~~~~l~~~~~~--~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~---~~l~~ 167 (416)
T 4e2x_A 93 AMLARDFLATELT--GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREKGIRVRTDFFEKATA---DDVRR 167 (416)
T ss_dssp HHHHHHHHHTTTC--SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTTTCCEECSCCSHHHH---HHHHH
T ss_pred HHHHHHHHHHhCC--CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHcCCCcceeeechhhH---hhccc
Confidence 3444444454442 45789999999999654322 2356999999999999998875 3322 2333 45566
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchh-----HhHHHHHHHhCC
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHV-----MIVGAYFHYAGG 279 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~-----~~~~~~f~~~~G 279 (309)
++++||+|++.++++|++++..+|++++++|||||.+++++++..........+... ..|. ..+.+.+ ..+|
T Consensus 168 ~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~l~~ll-~~aG 244 (416)
T 4e2x_A 168 TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTSFDQIF--DEHFFLFSATSVQGMA-QRCG 244 (416)
T ss_dssp HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTCGGGCS--TTCCEECCHHHHHHHH-HHTT
T ss_pred CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcchhhhh--hhhhhcCCHHHHHHHH-HHcC
Confidence 778999999999999999999999999999999999999988743332221111111 1222 2334445 5699
Q ss_pred CCCCceeecc
Q 021661 280 YEPPQAVDIS 289 (309)
Q Consensus 280 f~~~~~~~~~ 289 (309)
|+.+++....
T Consensus 245 f~~~~~~~~~ 254 (416)
T 4e2x_A 245 FELVDVQRLP 254 (416)
T ss_dssp EEEEEEEEEC
T ss_pred CEEEEEEEcc
Confidence 9977766653
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-16 Score=139.21 Aligned_cols=145 Identities=14% Similarity=0.082 Sum_probs=102.3
Q ss_pred CCCCeEEEECCCcchhccCC-C-CCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHFPPG-Y-KQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~-~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
.++.+|||||||+|...... . ...+|+|+|+|+.|++.+++ +++++++|+ ..+++++++||+|++..++
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l 168 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASM---ETATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCG---GGCCCCSSCEEEEEEESCG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccH---HHCCCCCCCeEEEEEcchh
Confidence 45789999999999654322 1 14579999999999998764 378899999 7788888899999999999
Q ss_pred hccC--CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCc---hhHhHHHHHHHhCCCCCCceeeccCCCC
Q 021661 219 DYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDAD---HVMIVGAYFHYAGGYEPPQAVDISPNPG 293 (309)
Q Consensus 219 ~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~---h~~~~~~~f~~~~Gf~~~~~~~~~~~~~ 293 (309)
+|++ ++..+|+++.++|||||.+++..+..... ..+....... ....+.+.+ ..+||+.+++......+.
T Consensus 169 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l-~~aGf~~~~~~~~~~~~~ 243 (254)
T 1xtp_A 169 IYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD----RFLVDKEDSSLTRSDIHYKRLF-NESGVRVVKEAFQEEWPT 243 (254)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--C----CEEEETTTTEEEBCHHHHHHHH-HHHTCCEEEEEECTTCCT
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc----cceecccCCcccCCHHHHHHHH-HHCCCEEEEeeecCCCCc
Confidence 9995 58899999999999999998876421100 0011111111 123344455 458999888877665554
Q ss_pred CCCCcE
Q 021661 294 RSDPMY 299 (309)
Q Consensus 294 ~~~p~~ 299 (309)
..-|+.
T Consensus 244 ~~~~~~ 249 (254)
T 1xtp_A 244 DLFPLK 249 (254)
T ss_dssp TSCCEE
T ss_pred hhheEE
Confidence 444543
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.2e-16 Score=134.50 Aligned_cols=95 Identities=11% Similarity=0.074 Sum_probs=79.3
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC-------------CCcEEEecCCCCCCCCCCCCceeE
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~-------------~i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
++.+|||||||+|... ....+..+|+|+|+|+.|++.+++ +++++++|+ ..++.++++||+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~ 105 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGAL---TYQDKRFHGYDA 105 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCT---TSCCGGGCSCSE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCc---ccccccCCCcCE
Confidence 4679999999999543 233455799999999999998765 478999999 777777789999
Q ss_pred EEeccchhccCCH--HHHHHHHHhhcccCcEEEEEe
Q 021661 212 ITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 212 Vis~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~ 245 (309)
|++..+++|++++ .++++++.++|||||.+++..
T Consensus 106 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 106 ATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp EEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred EeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 9999999999866 899999999999999666543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-16 Score=130.72 Aligned_cols=141 Identities=16% Similarity=0.131 Sum_probs=103.9
Q ss_pred CCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEec-cchhccC
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNV-VSVDYLT 222 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~-~vl~~l~ 222 (309)
++.+|||||||.|..... +..+.+|+|+|+|+.+++.++++ ++++++|+ ..+++++++||+|++. .+++|+.
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~---~~~~~~~~~~D~i~~~~~~~~~~~ 122 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDL---SVDQISETDFDLIVSAGNVMGFLA 122 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCT---TTSCCCCCCEEEEEECCCCGGGSC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEccc---ccCCCCCCceeEEEECCcHHhhcC
Confidence 478999999998854321 11257999999999999887653 88999999 7778778899999998 7899884
Q ss_pred --CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeec-cCCC-CCCCCc
Q 021661 223 --KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI-SPNP-GRSDPM 298 (309)
Q Consensus 223 --d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~-~~~~-~~~~p~ 298 (309)
+...+++++.++|||||.+++.+++... .....+.+.+ ...||...+.... ...+ ....+.
T Consensus 123 ~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~--------------~~~~~~~~~l-~~~Gf~~~~~~~~~~~~~~~~~~~~ 187 (195)
T 3cgg_A 123 EDGREPALANIHRALGADGRAVIGFGAGRG--------------WVFGDFLEVA-ERVGLELENAFESWDLKPFVQGSEF 187 (195)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEETTSS--------------CCHHHHHHHH-HHHTEEEEEEESSTTCCBCCTTCSE
T ss_pred hHHHHHHHHHHHHHhCCCCEEEEEeCCCCC--------------cCHHHHHHHH-HHcCCEEeeeecccccCcCCCCCcE
Confidence 4589999999999999999998765321 1122333444 3478987666544 2222 235678
Q ss_pred EEEEEEeC
Q 021661 299 YVVYSRKA 306 (309)
Q Consensus 299 ~~v~a~k~ 306 (309)
.+++++|+
T Consensus 188 ~~~v~~k~ 195 (195)
T 3cgg_A 188 LVAVFTKK 195 (195)
T ss_dssp EEEEEEEC
T ss_pred EEEEEecC
Confidence 89999885
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-16 Score=141.32 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=83.7
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchhccC-C---CCCCeEEEEeCCHHHHhhCCC----------CCcEEEecCCCCCC
Q 021661 136 KYYSEVFPPSNTPGVSILDLCSSWVSHFPP-G---YKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPK 201 (309)
Q Consensus 136 ~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~---~~~~~v~giD~S~~~l~~a~~----------~i~~~~~D~~~~~~ 201 (309)
+.+..... .++.+|||||||+|..... + .++.+|+|+|+|+.|++.+++ +++++++|+ ++
T Consensus 27 ~~l~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~---~~ 100 (299)
T 3g5t_A 27 KMIDEYHD---GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS---DD 100 (299)
T ss_dssp HHHHHHCC---SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCT---TC
T ss_pred HHHHHHhc---CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCH---Hh
Confidence 34444443 3478999999999954322 2 367899999999999997743 588999999 88
Q ss_pred CCCCC------CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 202 LPFED------NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 202 lp~~~------~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+++++ ++||+|++..+++|+ ++..+++++.++|||||.+++
T Consensus 101 ~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 101 FKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp CGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred CCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEE
Confidence 88777 899999999999999 999999999999999998876
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-16 Score=141.26 Aligned_cols=98 Identities=18% Similarity=0.297 Sum_probs=84.6
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC---CCcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~---~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
.++.+|||||||+|.... .+.++.+|+|+|+|+.|++.+++ +++++++|+ +.+++ +++||+|++..+++|++
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~-~~~fD~v~~~~~l~~~~ 131 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADA---RNFRV-DKPLDAVFSNAMLHWVK 131 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCT---TTCCC-SSCEEEEEEESCGGGCS
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECCh---hhCCc-CCCcCEEEEcchhhhCc
Confidence 457899999999995432 12267899999999999998875 489999999 78887 57899999999999999
Q ss_pred CHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 223 KPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++..+|+++.++|||||.+++.+++.
T Consensus 132 d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 132 EPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 99999999999999999999987764
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-16 Score=139.51 Aligned_cols=97 Identities=15% Similarity=0.247 Sum_probs=84.5
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC---CCcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~---~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
.++.+|||||||+|... ....++.+|+|+|+|+.|++.+++ +++++++|+ ..++ ++++||+|+++.+++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~~~-~~~~fD~v~~~~~l~~ 107 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADL---ATWK-PAQKADLLYANAVFQW 107 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCT---TTCC-CSSCEEEEEEESCGGG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECCh---hhcC-ccCCcCEEEEeCchhh
Confidence 45789999999998543 223357899999999999998864 489999999 7777 6789999999999999
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++++..+|+++.++|||||.+++.+++
T Consensus 108 ~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 108 VPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp STTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 999999999999999999999998765
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.6e-16 Score=139.19 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=102.8
Q ss_pred CCeEEEECCCc---chhc---cCCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCC-----------CC
Q 021661 149 GVSILDLCSSW---VSHF---PPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLP-----------FE 205 (309)
Q Consensus 149 ~~~ILDiGcG~---g~~~---~~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp-----------~~ 205 (309)
..+|||||||+ |... ....++.+|+++|+|+.|++.+++ +++++++|+ .+.+ ++
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~---~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADV---RDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCT---TCHHHHHHSHHHHHHCC
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeC---CCchhhhccchhhccCC
Confidence 47999999999 8543 223577899999999999998764 378999999 4421 33
Q ss_pred CCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEecCcc---hhHHHhhhhhcC---CCCchhHhHHHHHHHh
Q 021661 206 DNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSNRC---FWTKAISIWTST---GDADHVMIVGAYFHYA 277 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~~~~---~~~~~~~~w~~~---~~~~h~~~~~~~f~~~ 277 (309)
.++||+|+++.+|||+++ +..+|++++++|||||.|+++..... ...+....|... .......-+.++|
T Consensus 155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ei~~~l--- 231 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGLPAQQKLARITRENLGEGWARTPEEIERQF--- 231 (274)
T ss_dssp TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSCHHHHHHHHHHHHHHSCCCCBCHHHHHHTT---
T ss_pred CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcchHHHHHHHHHHHhcCCCCccCCHHHHHHHh---
Confidence 358999999999999987 89999999999999999988865432 222233334321 1111223334444
Q ss_pred CCCCCCc--eeec---cCCCC--C--CC----CcEEEEEEeCC
Q 021661 278 GGYEPPQ--AVDI---SPNPG--R--SD----PMYVVYSRKAS 307 (309)
Q Consensus 278 ~Gf~~~~--~~~~---~~~~~--~--~~----p~~~v~a~k~~ 307 (309)
.||+.++ .+.. .+... . .+ .+|..+|||++
T Consensus 232 ~G~~l~~~g~~~~~~w~p~~~~~~~~~~~~~~~~~~~v~rk~~ 274 (274)
T 2qe6_A 232 GDFELVEPGVVYTALWRPDEPVDPDNLSPGEQLGMAGIGRKKA 274 (274)
T ss_dssp TTCEECTTCSEEGGGSSCSSCCCTTSCCGGGGSEEEEEEECCC
T ss_pred CCCeEccCcEeccccccCCCCCccccCCccceeEEEEEEecCC
Confidence 5886554 2222 12211 1 12 25999999973
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.64 E-value=9e-17 Score=138.65 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=76.2
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC--------------------CCcEEEecCCCCCCCCCCC
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV--------------------LTEYVVQDLNLNPKLPFED 206 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~--------------------~i~~~~~D~~~~~~lp~~~ 206 (309)
++.+|||+|||+|.... .+..+.+|+|+|+|+.|++.|++ +++++++|+ .++++++
T Consensus 22 ~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~---~~l~~~~ 98 (203)
T 1pjz_A 22 PGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF---FALTARD 98 (203)
T ss_dssp TTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC---SSSTHHH
T ss_pred CCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc---ccCCccc
Confidence 47899999999995432 22236799999999999987643 478999999 8888765
Q ss_pred -CceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEE
Q 021661 207 -NSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 207 -~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~ 244 (309)
++||+|++..+++|++. ..+++++++|+|||||.+++.
T Consensus 99 ~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 99 IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 78999999999999964 456999999999999974433
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-16 Score=141.27 Aligned_cols=147 Identities=14% Similarity=0.161 Sum_probs=104.2
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchhccCC-C-CCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCC
Q 021661 136 KYYSEVFPPSNTPGVSILDLCSSWVSHFPPG-Y-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPF 204 (309)
Q Consensus 136 ~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~-~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~ 204 (309)
+.+.+.++. ..++.+|||||||+|...... . .+.+|+|+|+|+.|++.+++ +++++++|+ .++|+
T Consensus 106 ~~l~~~l~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~ 181 (312)
T 3vc1_A 106 EFLMDHLGQ-AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM---LDTPF 181 (312)
T ss_dssp HHHHTTSCC-CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSCCC
T ss_pred HHHHHHhcc-CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hcCCC
Confidence 445555542 256789999999999543222 1 16799999999999998765 388999999 88888
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcch-------hHHHhhhhhcCCCCchhHhHHHHHHHh
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF-------WTKAISIWTSTGDADHVMIVGAYFHYA 277 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~-------~~~~~~~w~~~~~~~h~~~~~~~f~~~ 277 (309)
++++||+|++..+++|+ ++..+|+++.++|||||.+++....... ....+...... .......+.+.+ ++
T Consensus 182 ~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~l-~~ 258 (312)
T 3vc1_A 182 DKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFEC-NIHSRREYLRAM-AD 258 (312)
T ss_dssp CTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTC-CCCBHHHHHHHH-HT
T ss_pred CCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcC-CCCCHHHHHHHH-HH
Confidence 88999999999999999 6999999999999999988877543111 11111111111 122233444455 56
Q ss_pred CCCCCCceeecc
Q 021661 278 GGYEPPQAVDIS 289 (309)
Q Consensus 278 ~Gf~~~~~~~~~ 289 (309)
+||+.+++..+.
T Consensus 259 aGf~~~~~~~~~ 270 (312)
T 3vc1_A 259 NRLVPHTIVDLT 270 (312)
T ss_dssp TTEEEEEEEECH
T ss_pred CCCEEEEEEeCC
Confidence 899988887764
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.8e-16 Score=138.63 Aligned_cols=108 Identities=12% Similarity=0.221 Sum_probs=85.3
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCC
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNP 200 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~ 200 (309)
....+.+.+.++ ..++.+|||||||+|...... ..+.+|+|+|+|+.|++.+++ +++++++|+ .
T Consensus 50 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~ 124 (287)
T 1kpg_A 50 IAKIDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---E 124 (287)
T ss_dssp HHHHHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---G
T ss_pred HHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh---h
Confidence 344445555554 256789999999999543221 124599999999999987754 478899998 6
Q ss_pred CCCCCCCceeEEEeccchhcc--CCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 201 KLPFEDNSFDVITNVVSVDYL--TKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 201 ~lp~~~~sfDlVis~~vl~~l--~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++| ++||+|++..+++|+ .++..+|+++.++|||||.+++..+.
T Consensus 125 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 170 (287)
T 1kpg_A 125 QFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 170 (287)
T ss_dssp GCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hCC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 665 789999999999999 68899999999999999999887664
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-16 Score=135.41 Aligned_cols=97 Identities=24% Similarity=0.308 Sum_probs=82.8
Q ss_pred CCCeEEEECCCcchh-c-cCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 148 PGVSILDLCSSWVSH-F-PPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~-~-~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
++.+|||+|||+|.. . ....++.+|+|+|+|+.|++.+++ +++++++|+ .++++++++||+|++..++
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDI---RKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCT---TSCCSCTTCEEEEEECSCG
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECch---hhCCCCCCceeEEEEcChH
Confidence 378999999998864 2 223456799999999999998764 378999999 7888888899999999999
Q ss_pred hcc--CCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 219 DYL--TKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 219 ~~l--~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+|+ .++.++++++.++|||||.+++.+.+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 999 67889999999999999999888654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-16 Score=142.17 Aligned_cols=102 Identities=11% Similarity=0.168 Sum_probs=78.3
Q ss_pred CCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC--------------CcEEEecCCCC---CCC--CCCC
Q 021661 148 PGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL--------------TEYVVQDLNLN---PKL--PFED 206 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~--------------i~~~~~D~~~~---~~l--p~~~ 206 (309)
++.+|||||||+|..+. ......+|+|+|+|+.||+.|+++ ++|.+.|+... +++ ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 47899999999985332 223356999999999999988763 24677776210 011 2456
Q ss_pred CceeEEEeccchhcc---CCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 207 NSFDVITNVVSVDYL---TKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 207 ~sfDlVis~~vl~~l---~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
++||+|+|.+++||+ .+...+|++++++|||||.+++++++..
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~ 173 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGD 173 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 899999999999986 4568999999999999999999988754
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.6e-16 Score=139.50 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=78.7
Q ss_pred CCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC-----------CCcEEEecCCCCCCCCCCCCceeEEEec-
Q 021661 149 GVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFDVITNV- 215 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~-----------~i~~~~~D~~~~~~lp~~~~sfDlVis~- 215 (309)
+.+|||||||+|.... .+..+.+|+|+|+|+.|++.+++ +++++++|+ .++++ +++||+|++.
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~---~~~~~-~~~fD~v~~~~ 158 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM---SAFAL-DKRFGTVVISS 158 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBT---TBCCC-SCCEEEEEECH
T ss_pred CCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCch---hcCCc-CCCcCEEEECC
Confidence 4599999999996432 22236799999999999998764 378999999 77877 6789999965
Q ss_pred cchhccC--CHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 216 VSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 216 ~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
.+++|++ +...+|+++.++|||||.|++++.++.
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 159 GSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 5677765 358999999999999999999988754
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=134.21 Aligned_cols=130 Identities=15% Similarity=0.074 Sum_probs=93.8
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
+.+|||||||+|... ..+.++.+|+|+|+|+.|++.++++ ++++++|+ ..++ ++++||+|++..++
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~-~~~~fD~v~~~~~l 142 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDV---FTWR-PTELFDLIFDYVFF 142 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCT---TTCC-CSSCEEEEEEESST
T ss_pred CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECch---hcCC-CCCCeeEEEEChhh
Confidence 469999999999543 2234577999999999999876542 78999999 6766 45589999999999
Q ss_pred hccC--CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeecc
Q 021661 219 DYLT--KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDIS 289 (309)
Q Consensus 219 ~~l~--d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~ 289 (309)
+|++ ++..+++++.++|||||.+++........ .......-....+.+.+ ..+||+.+++....
T Consensus 143 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~------~~~~~~~~~~~~~~~~l-~~~Gf~~~~~~~~~ 208 (235)
T 3lcc_A 143 CAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH------VGGPPYKVDVSTFEEVL-VPIGFKAVSVEENP 208 (235)
T ss_dssp TTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC------CSCSSCCCCHHHHHHHH-GGGTEEEEEEEECT
T ss_pred hcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc------CCCCCccCCHHHHHHHH-HHcCCeEEEEEecC
Confidence 9998 88999999999999999887764432110 00000001123344455 45899987776654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=136.51 Aligned_cols=108 Identities=16% Similarity=0.214 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC---CCcEEEecCCCCCCCCCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~---~i~~~~~D~~~~~~lp~~ 205 (309)
....+.+.+...++. +.+|||||||+|..... ...+.+|+|+|+|+.|++.+++ +++++++|+ .++++
T Consensus 36 ~~~~~~~~l~~~~~~----~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~- 107 (263)
T 3pfg_A 36 EAADLAALVRRHSPK----AASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDM---RDFSL- 107 (263)
T ss_dssp HHHHHHHHHHHHCTT----CCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCT---TTCCC-
T ss_pred HHHHHHHHHHhhCCC----CCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECCh---HHCCc-
Confidence 334555666666553 68999999999965422 2235699999999999998876 489999999 78877
Q ss_pred CCceeEEEecc-chhccC---CHHHHHHHHHhhcccCcEEEEEe
Q 021661 206 DNSFDVITNVV-SVDYLT---KPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 206 ~~sfDlVis~~-vl~~l~---d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+++||+|++.. +++|+. +...+|+++.++|||||.++++.
T Consensus 108 ~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 108 GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 67899999998 999996 56688999999999999999974
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=138.43 Aligned_cols=106 Identities=16% Similarity=0.295 Sum_probs=83.3
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCC
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL 202 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~l 202 (309)
..+.+.+.+. ..++.+|||||||+|...... ..+.+|+|+|+|+.|++.+++ +++++++|+ .++
T Consensus 60 ~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~ 134 (302)
T 3hem_A 60 KRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---EEF 134 (302)
T ss_dssp HHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCG---GGC
T ss_pred HHHHHHHHcC--CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCH---HHc
Confidence 3344444443 256789999999999553221 113799999999999988765 377999999 555
Q ss_pred CCCCCceeEEEeccchhccCCH---------HHHHHHHHhhcccCcEEEEEecC
Q 021661 203 PFEDNSFDVITNVVSVDYLTKP---------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~d~---------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+++||+|++..+++|++++ ..+++++.++|||||.+++....
T Consensus 135 ---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 185 (302)
T 3hem_A 135 ---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 185 (302)
T ss_dssp ---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred ---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 6889999999999999776 79999999999999998887653
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=138.05 Aligned_cols=108 Identities=15% Similarity=0.290 Sum_probs=85.1
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCCC-C-CCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCC
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY-K-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNP 200 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~-~-~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~ 200 (309)
....+.+.+.+. ..++.+|||||||+|....... . +.+|+|+|+|+.|++.+++ +++++++|+ .
T Consensus 76 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~ 150 (318)
T 2fk8_A 76 YAKVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---E 150 (318)
T ss_dssp HHHHHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---G
T ss_pred HHHHHHHHHhcC--CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---H
Confidence 344445555554 2567899999999995432211 1 5699999999999997764 278899998 6
Q ss_pred CCCCCCCceeEEEeccchhcc--CCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 201 KLPFEDNSFDVITNVVSVDYL--TKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 201 ~lp~~~~sfDlVis~~vl~~l--~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++| ++||+|++..+++|+ .++..+++++.++|||||.+++..+.
T Consensus 151 ~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 196 (318)
T 2fk8_A 151 DFA---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV 196 (318)
T ss_dssp GCC---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred HCC---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 664 689999999999999 68899999999999999999887665
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=131.74 Aligned_cols=146 Identities=16% Similarity=0.111 Sum_probs=101.6
Q ss_pred CCCCCeEEEECCCcchhccC----CCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 146 NTPGVSILDLCSSWVSHFPP----GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~~~----~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.+++.+|||+|||+|..... ..+.++|+|+|+|++|++.+++ ++..+.+|+...+..+...+++|+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 57899999999999954322 2578999999999999986532 4788899985444556677899999874
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCCCC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRS 295 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~ 295 (309)
+.|..++..++.++.++|||||.++|.+..... .+..... .-+.-..+.+ .++||+..+.+++.|-+
T Consensus 155 --~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~------d~~~p~~-~~~~~ev~~L-~~~GF~l~e~i~L~pf~--- 221 (233)
T 4df3_A 155 --VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI------DVTTEPS-EVYKREIKTL-MDGGLEIKDVVHLDPFD--- 221 (233)
T ss_dssp --CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHH------HHHTCCC-HHHHHHHHHH-HHTTCCEEEEEECTTTS---
T ss_pred --ccCChhHHHHHHHHHHhccCCCEEEEEEecccC------CCCCChH-HHHHHHHHHH-HHCCCEEEEEEccCCCC---
Confidence 445567789999999999999999887543321 1111111 1111111223 46899999999887754
Q ss_pred CCcEEEEEE
Q 021661 296 DPMYVVYSR 304 (309)
Q Consensus 296 ~p~~~v~a~ 304 (309)
...+.|+++
T Consensus 222 ~~H~lv~~~ 230 (233)
T 4df3_A 222 RDHAMIYAV 230 (233)
T ss_dssp TTEEEEEEC
T ss_pred CceEEEEEE
Confidence 345777765
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.2e-15 Score=127.36 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=95.5
Q ss_pred CCCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHH
Q 021661 148 PGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEV 227 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~ 227 (309)
++.+|||||||+|...... ..+|+|+|+|+. +++++++|+ .++++++++||+|++..++|+ .++..+
T Consensus 67 ~~~~vLDiG~G~G~~~~~l--~~~v~~~D~s~~-------~~~~~~~d~---~~~~~~~~~fD~v~~~~~l~~-~~~~~~ 133 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSI--RNPVHCFDLASL-------DPRVTVCDM---AQVPLEDESVDVAVFCLSLMG-TNIRDF 133 (215)
T ss_dssp TTSCEEEETCTTCHHHHHC--CSCEEEEESSCS-------STTEEESCT---TSCSCCTTCEEEEEEESCCCS-SCHHHH
T ss_pred CCCeEEEECCcCCHHHHHh--hccEEEEeCCCC-------CceEEEecc---ccCCCCCCCEeEEEEehhccc-cCHHHH
Confidence 3689999999999655433 378999999988 588999999 788888889999999999975 899999
Q ss_pred HHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCCCCCCcEEEEEEeCC
Q 021661 228 FKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 228 l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
++++.++|||||.+++......+ .....+.+.+ ..+||+.++... .....++++++|..
T Consensus 134 l~~~~~~L~~gG~l~i~~~~~~~--------------~~~~~~~~~l-~~~Gf~~~~~~~------~~~~~~~~~~~k~~ 192 (215)
T 2zfu_A 134 LEEANRVLKPGGLLKVAEVSSRF--------------EDVRTFLRAV-TKLGFKIVSKDL------TNSHFFLFDFQKTG 192 (215)
T ss_dssp HHHHHHHEEEEEEEEEEECGGGC--------------SCHHHHHHHH-HHTTEEEEEEEC------CSTTCEEEEEEECS
T ss_pred HHHHHHhCCCCeEEEEEEcCCCC--------------CCHHHHHHHH-HHCCCEEEEEec------CCCeEEEEEEEecC
Confidence 99999999999998887543211 1223344455 458998655322 12356888888874
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-15 Score=131.45 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=81.9
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
.++.+|||||||+|..... +..+.+|+|+|+|+.|++.+++ +++++++|+ .++ +++++||+|+++.+++|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~---~~~-~~~~~~D~v~~~~~l~~~ 120 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDL---FDW-TPDRQWDAVFFAHWLAHV 120 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCT---TSC-CCSSCEEEEEEESCGGGS
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEeccc---ccC-CCCCceeEEEEechhhcC
Confidence 3467999999999954322 1126799999999999998764 488999999 666 677899999999999999
Q ss_pred CCH--HHHHHHHHhhcccCcEEEEEecCc
Q 021661 222 TKP--IEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 222 ~d~--~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+++ ..+|+++.++|||||.+++...++
T Consensus 121 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 149 (218)
T 3ou2_A 121 PDDRFEAFWESVRSAVAPGGVVEFVDVTD 149 (218)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 986 899999999999999988886653
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.8e-15 Score=125.57 Aligned_cols=138 Identities=14% Similarity=0.069 Sum_probs=99.0
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||+|||+|... ....+..+|+|+|+|+.+++.+++ +++++++|+ .+.....++||+|++.
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~D~i~~~ 115 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFA---PEGLDDLPDPDRVFIG 115 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCT---TTTCTTSCCCSEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCCh---hhhhhcCCCCCEEEEC
Confidence 45789999999998542 333466899999999999998765 378899998 4443334679999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC---
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP--- 292 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~--- 292 (309)
.+++ ++.++++++.++|||||.+++...... ....+.+.+ ...|| .+++..+....
T Consensus 116 ~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------~~~~~~~~l-~~~g~-~~~~~~~~~~~~~~ 174 (204)
T 3e05_A 116 GSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD----------------TLTKAVEFL-EDHGY-MVEVACVNVAKTKG 174 (204)
T ss_dssp CCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH----------------HHHHHHHHH-HHTTC-EEEEEEEEEEEEC-
T ss_pred CCCc---CHHHHHHHHHHhcCCCeEEEEEecccc----------------cHHHHHHHH-HHCCC-ceeEEEEEeecceE
Confidence 8776 889999999999999999998765322 122233344 45788 56655543221
Q ss_pred -C------CCCCcEEEEEEeCCC
Q 021661 293 -G------RSDPMYVVYSRKAST 308 (309)
Q Consensus 293 -~------~~~p~~~v~a~k~~~ 308 (309)
+ ...|.+++.++|...
T Consensus 175 ~~~~~~~~~~~Pv~i~~~~~~~~ 197 (204)
T 3e05_A 175 LTEYKMFESHNPVYIITAWKSDE 197 (204)
T ss_dssp --CCCBCEECCCEEEEEEECC--
T ss_pred ccceEEeccCCCeEEEEEEcCCC
Confidence 1 147999999999753
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-15 Score=131.20 Aligned_cols=110 Identities=27% Similarity=0.340 Sum_probs=86.7
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKL 202 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~l 202 (309)
...+.+.+.+.+++ +.+|||||||+|..... ...+.+|+|+|+|+.|++.+++ +++++++|+ .++
T Consensus 25 ~~~~~~~l~~~~~~----~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~ 97 (227)
T 1ve3_A 25 IETLEPLLMKYMKK----RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKL 97 (227)
T ss_dssp HHHHHHHHHHSCCS----CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSC
T ss_pred HHHHHHHHHHhcCC----CCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECch---hcC
Confidence 34445555555543 78999999999854321 1123499999999999987764 489999999 778
Q ss_pred CCCCCceeEEEeccc--hhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 203 PFEDNSFDVITNVVS--VDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 203 p~~~~sfDlVis~~v--l~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++++++||+|+++.+ +++..++.++++++.++|||||.+++..++
T Consensus 98 ~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 98 SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 877889999999999 555667889999999999999999888776
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=136.48 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=76.7
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCC-------------------------CCCcEEEecCCCCCC
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNP-------------------------VLTEYVVQDLNLNPK 201 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~-------------------------~~i~~~~~D~~~~~~ 201 (309)
++.+|||+|||+|.... .+..+.+|+|+|+|+.|++.|+ .+++++++|+ .+
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~---~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI---FD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT---TT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc---cc
Confidence 47899999999995432 2234679999999999998763 2378999999 88
Q ss_pred CCCCC-CceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEE
Q 021661 202 LPFED-NSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 202 lp~~~-~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~ 244 (309)
+++++ ++||+|++..+++|++. ...+++++.++|||||.+++.
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 88764 79999999999999964 467999999999999988543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.58 E-value=7.2e-15 Score=125.58 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=77.2
Q ss_pred CCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 149 GVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
+ +|||||||+|.... .+..+.+|+|+|+|+.|++.+++ +++++++|+ ..+++++++||+|+++....+
T Consensus 31 ~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~v~~~~~~~~ 106 (202)
T 2kw5_A 31 G-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNL---ADFDIVADAWEGIVSIFCHLP 106 (202)
T ss_dssp S-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBT---TTBSCCTTTCSEEEEECCCCC
T ss_pred C-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcCh---hhcCCCcCCccEEEEEhhcCC
Confidence 5 99999999985432 12235699999999999998765 378899999 788888889999999643222
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
..++..+++++.++|||||.+++.+.+..
T Consensus 107 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 107 SSLRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp HHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 34678999999999999999999877643
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-15 Score=129.51 Aligned_cols=108 Identities=21% Similarity=0.188 Sum_probs=85.2
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCC
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~ 205 (309)
+.+.+.+.++ ++.+|||+|||+|...... ....+|+|+|+|+.+++.+++ +++++++|+ ..++++
T Consensus 32 ~~~~l~~~~~----~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~---~~~~~~ 104 (215)
T 2pxx_A 32 FRALLEPELR----PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV---RKLDFP 104 (215)
T ss_dssp HHHHHGGGCC----TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT---TSCCSC
T ss_pred HHHHHHHhcC----CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch---hcCCCC
Confidence 3445555543 3789999999988543221 112389999999999987764 478999999 778888
Q ss_pred CCceeEEEeccchhccC---------------CHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 206 DNSFDVITNVVSVDYLT---------------KPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~---------------d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+++||+|++..+++++. ++..+++++.++|||||.+++..++.
T Consensus 105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 88999999999987765 56899999999999999998887764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-15 Score=134.61 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=75.0
Q ss_pred CCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCC--CCCCCceeEEEe-
Q 021661 147 TPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKL--PFEDNSFDVITN- 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~l--p~~~~sfDlVis- 214 (309)
.++.+|||||||+|.... ......+|+|||+|+.|++.|+++ +.++++|+ +.+ ++++++||.|+.
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a---~~~~~~~~~~~FD~i~~D 135 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW---EDVAPTLPDGHFDGILYD 135 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH---HHHGGGSCTTCEEEEEEC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehH---HhhcccccccCCceEEEe
Confidence 358899999999995432 223345899999999999988753 67788887 433 467889999974
Q ss_pred ----ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 ----VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ----~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
..+++|+.++..+++++.|+|||||.|++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f 168 (236)
T 3orh_A 136 TYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY 168 (236)
T ss_dssp CCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred eeecccchhhhcchhhhhhhhhheeCCCCEEEE
Confidence 56778888999999999999999998876
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-15 Score=126.19 Aligned_cols=93 Identities=20% Similarity=0.200 Sum_probs=77.5
Q ss_pred CCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
++.+|||+|||+|..... +..+.+|+|+|+|+.|++.+++ +++++++|+ ..+++ +++||+|++..++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~---~~~~~-~~~~D~v~~~~~l 107 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDL---NNLTF-DRQYDFILSTVVL 107 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCG---GGCCC-CCCEEEEEEESCG
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcch---hhCCC-CCCceEEEEcchh
Confidence 467999999999854321 1126699999999999998764 478999999 77777 7889999999999
Q ss_pred hccC--CHHHHHHHHHhhcccCcEEEEE
Q 021661 219 DYLT--KPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 219 ~~l~--d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+|++ ++..+++++.++|||||.+++.
T Consensus 108 ~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 135 (199)
T 2xvm_A 108 MFLEAKTIPGLIANMQRCTKPGGYNLIV 135 (199)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 9997 7899999999999999986554
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-16 Score=128.80 Aligned_cols=85 Identities=15% Similarity=0.227 Sum_probs=74.7
Q ss_pred CCCCCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCCC---CCCceeEEEeccch
Q 021661 146 NTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPF---EDNSFDVITNVVSV 218 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp~---~~~sfDlVis~~vl 218 (309)
..++.+|||||||. +++|+|+.|++.|++ ++++.++|+ +++++ ++++||+|+++.++
T Consensus 10 ~~~g~~vL~~~~g~-------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~---~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS-------------SPVEALKGLVDKLQALTGNEGRVSVENI---KQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT-------------SCHHHHHHHHHHHHHHTTTTSEEEEEEG---GGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc-------------eeeeCCHHHHHHHHHhcccCcEEEEech---hcCccccCCCCCEeEEEECChh
Confidence 45689999999985 239999999998765 389999999 77876 78899999999999
Q ss_pred hcc-CCHHHHHHHHHhhcccCcEEEEEec
Q 021661 219 DYL-TKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 219 ~~l-~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+|+ +++.++|++++|+|||||.+++..+
T Consensus 74 ~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 74 GSTTLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp TCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 999 9999999999999999999988644
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-15 Score=134.97 Aligned_cols=100 Identities=22% Similarity=0.256 Sum_probs=82.3
Q ss_pred CCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCC-CCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPF-EDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~-~~~sfDlVis~ 215 (309)
++.+|||||||+|..... ..+..+|+|+|+|+.|++.++++ ++++++|+ ..+++ ++++||+|++.
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS---YGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT---TTSCCCCSSCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCc---cccccCCCCCcCEEEEC
Confidence 478999999998854322 12345999999999999977653 68999999 77777 57899999999
Q ss_pred cchhc----cCCHHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 216 VSVDY----LTKPIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 216 ~vl~~----l~d~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
.+++| ..++..+|+++.++|||||.+++++++...
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 179 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV 179 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHH
Confidence 99987 456789999999999999999999887543
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-15 Score=134.66 Aligned_cols=94 Identities=15% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
++.+|||+|||+|.... .+..+.+|+|+|+|+.|++.+++ +++++++|+ ..+++ +++||+|+++.+++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~~-~~~fD~i~~~~~~~ 195 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDI---NAANI-QENYDFIVSTVVFM 195 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCG---GGCCC-CSCEEEEEECSSGG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEecc---ccccc-cCCccEEEEccchh
Confidence 37899999999995432 22226699999999999997765 478999999 67666 77899999999999
Q ss_pred ccCC--HHHHHHHHHhhcccCcEEEEEe
Q 021661 220 YLTK--PIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 220 ~l~d--~~~~l~~i~rvLkpGG~lii~~ 245 (309)
|+++ ...+++++.++|||||.+++..
T Consensus 196 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 196 FLNRERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp GSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9964 5699999999999999866643
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.56 E-value=5e-14 Score=122.26 Aligned_cols=138 Identities=10% Similarity=0.027 Sum_probs=90.5
Q ss_pred CCCCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHh----hCC--CCCcEEEecCCCCCC----CCCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELK----RNP--VLTEYVVQDLNLNPK----LPFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~----~a~--~~i~~~~~D~~~~~~----lp~~~~sfDlVi 213 (309)
.++.+|||||||+|.... ...+.++|+|+|+|+.|++ .++ .++.++++|+ .. .++. ++||+|+
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~---~~~~~~~~~~-~~fD~V~ 131 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPWKYSGIV-EKVDLIY 131 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGGGTTTTC-CCEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCC---CCchhhcccc-cceeEEE
Confidence 568899999999995432 2233579999999998653 333 3577888888 44 2444 7899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHH---HHHHhCCCCCCceeeccC
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGA---YFHYAGGYEPPQAVDISP 290 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~---~f~~~~Gf~~~~~~~~~~ 290 (309)
++. .++ .+...++++++++|||||.+++.+..... .+. ...-..+.+ .+. ++ |+..+.++..|
T Consensus 132 ~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~~------~~~----~~~~~~~~~~~~~l~-~~-f~~~~~~~~~p 197 (210)
T 1nt2_A 132 QDI-AQK-NQIEILKANAEFFLKEKGEVVIMVKARSI------DST----AEPEEVFKSVLKEME-GD-FKIVKHGSLMP 197 (210)
T ss_dssp ECC-CST-THHHHHHHHHHHHEEEEEEEEEEEEHHHH------CTT----SCHHHHHHHHHHHHH-TT-SEEEEEEECTT
T ss_pred Eec-cCh-hHHHHHHHHHHHHhCCCCEEEEEEecCCc------ccc----CCHHHHHHHHHHHHH-hh-cEEeeeecCCC
Confidence 973 222 23445699999999999999888543210 011 111122211 243 35 99888888765
Q ss_pred CCCCCCCcEEEEEEe
Q 021661 291 NPGRSDPMYVVYSRK 305 (309)
Q Consensus 291 ~~~~~~p~~~v~a~k 305 (309)
.. ...|.|+++|
T Consensus 198 ~~---~~h~~~~~~~ 209 (210)
T 1nt2_A 198 YH---RDHIFIHAYR 209 (210)
T ss_dssp TC---TTEEEEEEEE
T ss_pred CC---CCcEEEEEEc
Confidence 32 3678999987
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8e-15 Score=134.33 Aligned_cols=99 Identities=19% Similarity=0.320 Sum_probs=79.9
Q ss_pred CCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCC---------------CCcEEEecCCCCCCCC----C--
Q 021661 148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPV---------------LTEYVVQDLNLNPKLP----F-- 204 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~---------------~i~~~~~D~~~~~~lp----~-- 204 (309)
++.+|||||||+|..... ..+..+|+|+|+|+.|++.+++ +++++++|+ ..++ +
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~ 110 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADS---SKELLIDKFRD 110 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCT---TTSCSTTTCSS
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecc---cccchhhhccc
Confidence 478999999999854321 1356799999999999987754 367999999 6654 4
Q ss_pred CCCceeEEEeccchhcc-C---CHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 205 EDNSFDVITNVVSVDYL-T---KPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l-~---d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
++++||+|+++.++||+ . ++..+|+++.++|||||.+++++++..
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 159 (313)
T 3bgv_A 111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSF 159 (313)
T ss_dssp TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChH
Confidence 34589999999999998 4 457999999999999999999988753
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=5.8e-15 Score=129.80 Aligned_cols=93 Identities=15% Similarity=0.084 Sum_probs=72.7
Q ss_pred CCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCC--CCCCCceeEEEe-c
Q 021661 148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKL--PFEDNSFDVITN-V 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~l--p~~~~sfDlVis-~ 215 (309)
++.+|||||||+|..... .....+|+|+|+|+.|++.|+++ ++++++|+ .++ ++++++||+|++ .
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~fD~V~~d~ 136 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLW---EDVAPTLPDGHFDGILYDT 136 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCH---HHHGGGSCTTCEEEEEECC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCH---HHhhcccCCCceEEEEECC
Confidence 478999999999954322 22234899999999999887653 68899999 777 788899999999 5
Q ss_pred cchhcc-----CCHHHHHHHHHhhcccCcEEEEE
Q 021661 216 VSVDYL-----TKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 216 ~vl~~l-----~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+.+ +. .+...++++++|+|||||.+++.
T Consensus 137 ~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~ 169 (236)
T 1zx0_A 137 YPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp CCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEE
Confidence 554 22 23457899999999999988764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.2e-14 Score=116.64 Aligned_cols=131 Identities=18% Similarity=0.096 Sum_probs=95.9
Q ss_pred CCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH---
Q 021661 149 GVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--- 224 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~--- 224 (309)
+.+|||+|||+|..... +... +|+|+|+|+.|++. ..+++++++|+ .+ ++++++||+|+++..+++..+.
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~-~~~~~~~~~d~---~~-~~~~~~fD~i~~n~~~~~~~~~~~~ 97 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES-HRGGNLVRADL---LC-SINQESVDVVVFNPPYVPDTDDPII 97 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT-CSSSCEEECST---TT-TBCGGGCSEEEECCCCBTTCCCTTT
T ss_pred CCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc-ccCCeEEECCh---hh-hcccCCCCEEEECCCCccCCccccc
Confidence 67999999999965422 2233 99999999999999 66799999999 55 5566899999999988876554
Q ss_pred ------HHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCCCCCCc
Q 021661 225 ------IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPGRSDPM 298 (309)
Q Consensus 225 ------~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p~ 298 (309)
..+++++.+.| |||.+++..+... ....+.+++ +..||...++..... +.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~----------------~~~~l~~~l-~~~gf~~~~~~~~~~---~~e~~ 156 (170)
T 3q87_B 98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEAN----------------RPKEVLARL-EERGYGTRILKVRKI---LGETV 156 (170)
T ss_dssp BCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG----------------CHHHHHHHH-HHTTCEEEEEEEEEC---SSSEE
T ss_pred cCCcchHHHHHHHHhhC-CCCEEEEEEecCC----------------CHHHHHHHH-HHCCCcEEEEEeecc---CCceE
Confidence 68899999999 9999888754321 122334445 457898766665433 33566
Q ss_pred EEEEEEeC
Q 021661 299 YVVYSRKA 306 (309)
Q Consensus 299 ~~v~a~k~ 306 (309)
+.+..+|.
T Consensus 157 ~~~~~~~~ 164 (170)
T 3q87_B 157 YIIKGEKS 164 (170)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 77776664
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=122.22 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=70.7
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC-CCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP-FEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp-~~~~sfDlVis~~ 216 (309)
.++.+|||+|||+|... ..+..+.+|+|+|+|+.|++.|++ ++++++.|. ..++ +.+++||+|+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~---~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 21 DDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGH---ENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCG---GGGGGTCCSCEEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcH---HHHHhhccCCcCEEEEeC
Confidence 34889999999999543 222227899999999999998765 367888777 5543 4467899999873
Q ss_pred -chhc--------cCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 217 -SVDY--------LTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 -vl~~--------l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+++ ..+...+++++.++|||||.+++...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 3332 12346789999999999998887644
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.8e-15 Score=129.11 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=84.0
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCC
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDN 207 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~ 207 (309)
..+.+.+...++ ++.+|||||||+|...... ..+.+|+|+|+|+.|++.++++ ++++++|+ .++++ ++
T Consensus 28 ~~~~~~l~~~~~----~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~---~~~~~-~~ 99 (239)
T 3bxo_A 28 SDIADLVRSRTP----EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDM---RDFRL-GR 99 (239)
T ss_dssp HHHHHHHHHHCT----TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCT---TTCCC-SS
T ss_pred HHHHHHHHHhcC----CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCH---HHccc-CC
Confidence 344555555553 3789999999999543221 1134899999999999988753 89999999 77776 67
Q ss_pred ceeEEEec-cchhccCC---HHHHHHHHHhhcccCcEEEEEecC
Q 021661 208 SFDVITNV-VSVDYLTK---PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 208 sfDlVis~-~vl~~l~d---~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+||+|+|. .+++|+.+ ...+|+++.++|||||.++++..+
T Consensus 100 ~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (239)
T 3bxo_A 100 KFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWW 143 (239)
T ss_dssp CEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred CCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 89999965 49999954 578999999999999999998654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.9e-15 Score=127.44 Aligned_cols=97 Identities=15% Similarity=0.197 Sum_probs=76.5
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhh----CCC--------CCcEEEecCCCCCCCCCCCCceeE
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKR----NPV--------LTEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~----a~~--------~i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
.++.+|||||||+|... ....++.+|+|+|+|+.|++. +++ +++++++|+ .++|+++++ |.
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~---~~l~~~~~~-d~ 101 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATA---ERLPPLSGV-GE 101 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCS---TTCCSCCCE-EE
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecch---hhCCCCCCC-CE
Confidence 34789999999999543 344567899999999998885 222 478999999 888887766 76
Q ss_pred EEec---cch--hccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNV---VSV--DYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~---~vl--~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|+.. ..+ +|++++..+++++.++|||||.+++++..
T Consensus 102 v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 142 (218)
T 3mq2_A 102 LHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNL 142 (218)
T ss_dssp EEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEG
T ss_pred EEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecc
Confidence 6633 334 37888999999999999999999997654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-14 Score=124.31 Aligned_cols=138 Identities=17% Similarity=0.164 Sum_probs=94.1
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCC----CCCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPK----LPFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~----lp~~~~sfDlVi 213 (309)
.++.+|||+|||+|... ....+..+|+|+|+|+.|++.+++ ++.++++|+ .. +++. ++||+|+
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~~~~~~-~~~D~v~ 148 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQEYANIV-EKVDVIY 148 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGGGGTTTS-CCEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC---CCcccccccC-ccEEEEE
Confidence 45789999999999543 233345799999999999975432 478899999 66 6665 7899999
Q ss_pred eccchhccCCH---HHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHH---HHHHhCCCCCCceee
Q 021661 214 NVVSVDYLTKP---IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGA---YFHYAGGYEPPQAVD 287 (309)
Q Consensus 214 s~~vl~~l~d~---~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~---~f~~~~Gf~~~~~~~ 287 (309)
+++.++ ..+++++.++|||||.+++.+..... ......+ .++.+ .+ ..+||+.++...
T Consensus 149 -----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~---------~~~~~~~-~~~~~~l~~l-~~~Gf~~~~~~~ 212 (230)
T 1fbn_A 149 -----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSI---------DVTKDPK-EIFKEQKEIL-EAGGFKIVDEVD 212 (230)
T ss_dssp -----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGT---------CSSSCHH-HHHHHHHHHH-HHHTEEEEEEEE
T ss_pred -----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCC---------CCCCCHH-HhhHHHHHHH-HHCCCEEEEEEc
Confidence 455666 78899999999999998886321110 0000001 11111 33 457998877776
Q ss_pred ccCCCCCCCCcEEEEEEeCC
Q 021661 288 ISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 288 ~~~~~~~~~p~~~v~a~k~~ 307 (309)
+.+. ....++|+++|..
T Consensus 213 ~~~~---~~~~~~v~~~k~~ 229 (230)
T 1fbn_A 213 IEPF---EKDHVMFVGIWEG 229 (230)
T ss_dssp CTTT---STTEEEEEEEECC
T ss_pred cCCC---ccceEEEEEEeCC
Confidence 5543 2456889999864
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=128.88 Aligned_cols=148 Identities=13% Similarity=0.072 Sum_probs=101.9
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.+..+|||||||+|.. +....|..+++++|+ +.+++.+++ +++++.+|+ . .+++. +||+|++
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~---~-~~~p~-~~D~v~~ 274 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDF---F-ETIPD-GADVYLI 274 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---T-TCCCS-SCSEEEE
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCC---C-CCCCC-CceEEEh
Confidence 4468999999999954 344567889999999 999987764 489999999 4 34444 7999999
Q ss_pred ccchhccCCHH--HHHHHHHhhcccCcEEEEEec-Ccc---hhHHHhhh--hh-cCCCCchhHhHHHHHHHhCCCCCCce
Q 021661 215 VVSVDYLTKPI--EVFKEMCQVLKPGGLAIVSFS-NRC---FWTKAISI--WT-STGDADHVMIVGAYFHYAGGYEPPQA 285 (309)
Q Consensus 215 ~~vl~~l~d~~--~~l~~i~rvLkpGG~lii~~~-~~~---~~~~~~~~--w~-~~~~~~h~~~~~~~f~~~~Gf~~~~~ 285 (309)
..++|+++++. ++|++++++|||||.++|... .+. ......+. +. ..+......-+.+.+ .++||+.+++
T Consensus 275 ~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll-~~aGf~~~~~ 353 (369)
T 3gwz_A 275 KHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALL-EKSGLRVERS 353 (369)
T ss_dssp ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHH-HTTTEEEEEE
T ss_pred hhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHH-HHCCCeEEEE
Confidence 99999998876 799999999999998766432 111 11111111 11 112222233444455 5689998887
Q ss_pred eeccCCCCCCCCcEEEEEEeC
Q 021661 286 VDISPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 286 ~~~~~~~~~~~p~~~v~a~k~ 306 (309)
..... .+.-+|.++|.
T Consensus 354 ~~~~~-----~~~svie~~~a 369 (369)
T 3gwz_A 354 LPCGA-----GPVRIVEIRRA 369 (369)
T ss_dssp EECSS-----SSEEEEEEEEC
T ss_pred EECCC-----CCcEEEEEEeC
Confidence 65332 45677777763
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-14 Score=130.51 Aligned_cols=97 Identities=13% Similarity=0.093 Sum_probs=75.6
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCCC--cEEEecCCCCCCCCC-----CCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVLT--EYVVQDLNLNPKLPF-----EDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~i--~~~~~D~~~~~~lp~-----~~~sfDlVis~~vl 218 (309)
.++.+|||||||+|... ..+..+.+|+|+|+|+.|++.++++. .+++.|+ ..++. .+++||+|+++.++
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~---~~~~~~~~~~~~~~fD~Vv~~~~l 120 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDL---LDITAEIPKELAGHFDFVLNDRLI 120 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEE---CCTTSCCCGGGTTCCSEEEEESCG
T ss_pred CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccceeee---eecccccccccCCCccEEEEhhhh
Confidence 55789999999999543 22334679999999999999887652 2456666 44332 25689999999999
Q ss_pred hccC--CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 219 DYLT--KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 219 ~~l~--d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+|+. +...+++++.++| |||.+++++..
T Consensus 121 ~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 121 NRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp GGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred HhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 9985 4568999999999 99999998653
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=9.1e-14 Score=129.82 Aligned_cols=146 Identities=8% Similarity=-0.003 Sum_probs=102.7
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|.. +....+..+++++|+ +.|++.+++ +++++++|+ .+.++++ +|+|++
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~--~D~v~~ 262 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI---YKESYPE--ADAVLF 262 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCT---TTSCCCC--CSEEEE
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcc---ccCCCCC--CCEEEE
Confidence 4578999999999954 334467789999999 999987764 388999999 6666654 399999
Q ss_pred ccchhccCC--HHHHHHHHHhhcccCcEEEEEe-cCc----chhHHHhhhhh--cCCCC----chhHhHHHHHHHhCCCC
Q 021661 215 VVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSF-SNR----CFWTKAISIWT--STGDA----DHVMIVGAYFHYAGGYE 281 (309)
Q Consensus 215 ~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~-~~~----~~~~~~~~~w~--~~~~~----~h~~~~~~~f~~~~Gf~ 281 (309)
..+++++++ ..++|+++.++|||||.++|.. ..+ ......+..+. ..+.. ....-+.+.+. ++||+
T Consensus 263 ~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~-~aGf~ 341 (359)
T 1x19_A 263 CRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILE-SLGYK 341 (359)
T ss_dssp ESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHH-HHTCE
T ss_pred echhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHH-HCCCc
Confidence 999999987 7899999999999999875543 221 11111111111 11111 23444555664 47999
Q ss_pred CCceeeccCCCCCCCCcEEEEEEeC
Q 021661 282 PPQAVDISPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 282 ~~~~~~~~~~~~~~~p~~~v~a~k~ 306 (309)
.+++.... +..+++++|+
T Consensus 342 ~v~~~~~~-------~~~vi~a~kp 359 (359)
T 1x19_A 342 DVTMVRKY-------DHLLVQAVKP 359 (359)
T ss_dssp EEEEEEET-------TEEEEEEECC
T ss_pred eEEEEecC-------CceEEEEeCC
Confidence 87777643 4678889885
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-14 Score=142.64 Aligned_cols=99 Identities=16% Similarity=0.176 Sum_probs=84.0
Q ss_pred CCCeEEEECCCcchhcc---CCC-CCCeEEEEeCCHHHHhhCCC--------------CCcEEEecCCCCCCCCCCCCce
Q 021661 148 PGVSILDLCSSWVSHFP---PGY-KQDRIVGMGMNEEELKRNPV--------------LTEYVVQDLNLNPKLPFEDNSF 209 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~---~~~-~~~~v~giD~S~~~l~~a~~--------------~i~~~~~D~~~~~~lp~~~~sf 209 (309)
++.+|||||||+|.... ... +..+|+|+|+|+.|++.|++ +++++++|+ ..+++.+++|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa---~dLp~~d~sF 797 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI---LEFDSRLHDV 797 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT---TSCCTTSCSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch---HhCCcccCCe
Confidence 47899999999995432 222 33799999999999998855 378999999 8899888999
Q ss_pred eEEEeccchhccCCHH--HHHHHHHhhcccCcEEEEEecCcch
Q 021661 210 DVITNVVSVDYLTKPI--EVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 210 DlVis~~vl~~l~d~~--~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
|+|++..+++|++++. .+++++.++|||| .+++++++..+
T Consensus 798 DlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey 839 (950)
T 3htx_A 798 DIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF 839 (950)
T ss_dssp CEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred eEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence 9999999999998765 5999999999999 99999888543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-14 Score=130.72 Aligned_cols=148 Identities=14% Similarity=0.142 Sum_probs=102.4
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCC-CCCCceeEEEec
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-FEDNSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp-~~~~sfDlVis~ 215 (309)
+.+|||||||+|.. +....|..+++++|+ +.+++.+++ +++++.+|+ ...+ +.+++||+|++.
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~D~v~~~ 255 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNL---LDARNFEGGAADVVMLN 255 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCT---TCGGGGTTCCEEEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCc---ccCcccCCCCccEEEEe
Confidence 68999999999954 344567889999999 888876654 388999999 5554 134569999999
Q ss_pred cchhccCCH--HHHHHHHHhhcccCcEEEEEecC---c---chhHHHhhhhh----cCCCCchhHhHHHHHHHhCCCCCC
Q 021661 216 VSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN---R---CFWTKAISIWT----STGDADHVMIVGAYFHYAGGYEPP 283 (309)
Q Consensus 216 ~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~~---~---~~~~~~~~~w~----~~~~~~h~~~~~~~f~~~~Gf~~~ 283 (309)
.++||+++. .++|++++++|||||.++|.... . ......++.+. ..+......-+.+.+ .++||+.+
T Consensus 256 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll-~~aGf~~~ 334 (352)
T 3mcz_A 256 DCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVV-RDAGLAVG 334 (352)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHSTTCCCCCHHHHHHHH-HHTTCEEE
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCCCCCcCCHHHHHHHH-HHCCCcee
Confidence 999999865 89999999999999987665321 1 11122222211 112222233444555 56999977
Q ss_pred ceeeccCCCCCCCCcEEEEEEeCCCC
Q 021661 284 QAVDISPNPGRSDPMYVVYSRKASTA 309 (309)
Q Consensus 284 ~~~~~~~~~~~~~p~~~v~a~k~~~~ 309 (309)
+.. ..+..+++++|++++
T Consensus 335 ~~~--------~g~~~l~~a~kp~~e 352 (352)
T 3mcz_A 335 ERS--------IGRYTLLIGQRSSGE 352 (352)
T ss_dssp EEE--------ETTEEEEEEECCCC-
T ss_pred eec--------cCceEEEEEecCCCC
Confidence 632 145789999999764
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.5e-14 Score=126.46 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=99.8
Q ss_pred CCeEEEECCCcc---hh---ccCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC------CCCCc
Q 021661 149 GVSILDLCSSWV---SH---FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP------FEDNS 208 (309)
Q Consensus 149 ~~~ILDiGcG~g---~~---~~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp------~~~~s 208 (309)
..+|||||||++ .. .....|..+|+++|.|+.||+.|++ +++|+++|+ .+++ ...++
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~---~~~~~~l~~~~~~~~ 155 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADM---LDPASILDAPELRDT 155 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCT---TCHHHHHTCHHHHTT
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecc---cChhhhhcccccccc
Confidence 369999999962 21 1223578999999999999998865 278999999 5542 11244
Q ss_pred ee-----EEEeccchhccCC---HHHHHHHHHhhcccCcEEEEEecCcc----hhHHHhhhhhcCCCCch---hHhHHHH
Q 021661 209 FD-----VITNVVSVDYLTK---PIEVFKEMCQVLKPGGLAIVSFSNRC----FWTKAISIWTSTGDADH---VMIVGAY 273 (309)
Q Consensus 209 fD-----lVis~~vl~~l~d---~~~~l~~i~rvLkpGG~lii~~~~~~----~~~~~~~~w~~~~~~~h---~~~~~~~ 273 (309)
|| .|+++.+|||+++ +..+++++.+.|+|||.|+++..... ......+.|...+..-. ..-+..+
T Consensus 156 ~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~~g~p~~~rs~~ei~~~ 235 (277)
T 3giw_A 156 LDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAARNMPMRLRTHAEAEEF 235 (277)
T ss_dssp CCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHHTTCCCCCCCHHHHHHT
T ss_pred cCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHhcCCCCccCCHHHHHHH
Confidence 65 6889999999987 57899999999999999998865432 22333444543332222 2334445
Q ss_pred HHHhCCCCCCc--eeecc---CCCC---C----CCCcEEEEEEeC
Q 021661 274 FHYAGGYEPPQ--AVDIS---PNPG---R----SDPMYVVYSRKA 306 (309)
Q Consensus 274 f~~~~Gf~~~~--~~~~~---~~~~---~----~~p~~~v~a~k~ 306 (309)
| .||+.++ ++... |.+. . .-.+|.-+|||+
T Consensus 236 f---~GlelvePG~v~~~~Wrp~~~~~~~~~~~~~~~~~gv~rk~ 277 (277)
T 3giw_A 236 F---EGLELVEPGIVQVHKWHPDAATADGIRDEDIAMYGAVARKP 277 (277)
T ss_dssp T---TTSEECTTCSEEGGGSSCCTTTTTTCCGGGCCEEEEEEECC
T ss_pred h---CCCcccCCcEeecccccCCCCCCCCCCcccceeEEEEEecC
Confidence 6 4887543 33222 2211 0 112589999995
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-14 Score=123.64 Aligned_cols=114 Identities=8% Similarity=-0.003 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCC
Q 021661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNL 198 (309)
Q Consensus 129 ~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~ 198 (309)
.....+.+.+..... .++.+|||+|||+|.... ...+..+|+|+|+|+.|++.++++ ++++++|+
T Consensus 28 ~~~~~l~~~l~~~~~---~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~-- 102 (189)
T 3p9n_A 28 RVRESLFNIVTARRD---LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAV-- 102 (189)
T ss_dssp HHHHHHHHHHHHHSC---CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCH--
T ss_pred HHHHHHHHHHHhccC---CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccH--
Confidence 344455555555432 247899999999995432 223456899999999999987753 78999998
Q ss_pred CCCCC--CCCCceeEEEeccchhcc-CCHHHHHHHHHh--hcccCcEEEEEecCc
Q 021661 199 NPKLP--FEDNSFDVITNVVSVDYL-TKPIEVFKEMCQ--VLKPGGLAIVSFSNR 248 (309)
Q Consensus 199 ~~~lp--~~~~sfDlVis~~vl~~l-~d~~~~l~~i~r--vLkpGG~lii~~~~~ 248 (309)
.+++ +++++||+|+++..+++. .+..++++++.+ +|||||.++++....
T Consensus 103 -~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 103 -AAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp -HHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred -HHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 5543 346789999999888875 678899999999 999999999987754
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4e-13 Score=126.16 Aligned_cols=146 Identities=12% Similarity=0.060 Sum_probs=101.1
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
.++.+|||||||+|... ....+..+++++|+ +.|++.+++ +++++++|+ .. ++++ ||+|++..+|||+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~~~--~D~v~~~~~lh~~ 280 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDM---FA-SVPQ--GDAMILKAVCHNW 280 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCT---TT-CCCC--EEEEEEESSGGGS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCc---cc-CCCC--CCEEEEecccccC
Confidence 34689999999999543 34457789999999 999999886 489999999 55 5543 9999999999999
Q ss_pred CCHH--HHHHHHHhhcccCcEEEEEe---cCcch------hHHHhhhh---hcCCCCchhHhHHHHHHHhCCCCCCceee
Q 021661 222 TKPI--EVFKEMCQVLKPGGLAIVSF---SNRCF------WTKAISIW---TSTGDADHVMIVGAYFHYAGGYEPPQAVD 287 (309)
Q Consensus 222 ~d~~--~~l~~i~rvLkpGG~lii~~---~~~~~------~~~~~~~w---~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~ 287 (309)
+++. ++|++++++|||||.++|.. +.... .....+.+ ...+......-+.+.+ +++||+.+++..
T Consensus 281 ~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll-~~aGf~~~~~~~ 359 (372)
T 1fp1_D 281 SDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLS-KLSGFSKFQVAC 359 (372)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHH-HHTTCSEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHH-HHCCCceEEEEE
Confidence 9887 99999999999999877652 22111 11222221 1112222233444455 459999888776
Q ss_pred ccCCCCCCCCcEEEEEEe
Q 021661 288 ISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 288 ~~~~~~~~~p~~~v~a~k 305 (309)
... .+..+|.++|
T Consensus 360 ~~~-----~~~~vie~~~ 372 (372)
T 1fp1_D 360 RAF-----NSLGVMEFYK 372 (372)
T ss_dssp EET-----TTEEEEEEEC
T ss_pred cCC-----CCeEEEEEeC
Confidence 543 1135666654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.7e-14 Score=130.36 Aligned_cols=149 Identities=14% Similarity=0.070 Sum_probs=99.5
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCC--CCCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL--PFEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~l--p~~~~sfDlVi 213 (309)
...+|||||||+|... ...+|..+++++|+ +.|++.+++ +++++.+|+ ... |++ ++||+|+
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~p-~~~D~v~ 253 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANL---LDRDVPFP-TGFDAVW 253 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCC---CSSSCCCC-CCCSEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccc---cccCCCCC-CCcCEEE
Confidence 3679999999999543 34467889999999 999987764 388999999 543 455 6799999
Q ss_pred eccchhccCCH--HHHHHHHHhhcccCcEEEEEecC--c-chhHH-----Hhh--h--hhcC-CCCchhHhHHHHHHHhC
Q 021661 214 NVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN--R-CFWTK-----AIS--I--WTST-GDADHVMIVGAYFHYAG 278 (309)
Q Consensus 214 s~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~~--~-~~~~~-----~~~--~--w~~~-~~~~h~~~~~~~f~~~~ 278 (309)
+..++|++++. .++|++++++|||||.++|.... . ..... ... . +... .......-+.+.+ +++
T Consensus 254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll-~~A 332 (363)
T 3dp7_A 254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCI-ENA 332 (363)
T ss_dssp EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHH-HTT
T ss_pred EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHH-HHc
Confidence 99999999765 57899999999999987665322 1 11111 011 1 1111 1111233444455 568
Q ss_pred CCCCCceeeccCCCCCCCCcEEEEEEeCC
Q 021661 279 GYEPPQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 279 Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
||+.+++..... .+..+|.++|.+
T Consensus 333 Gf~~v~~~~~~g-----~~~svi~~~~~~ 356 (363)
T 3dp7_A 333 GLEVEEIQDNIG-----LGHSILQCRLKE 356 (363)
T ss_dssp TEEESCCCCCBT-----TTBEEEEEEEC-
T ss_pred CCeEEEEEeCCC-----CCceEEEEeecc
Confidence 999877654332 345666666654
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-14 Score=126.32 Aligned_cols=137 Identities=10% Similarity=0.029 Sum_probs=96.0
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCC---CCceeEEE
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE---DNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~---~~sfDlVi 213 (309)
++.+|||||||+|.. +....++.+|+|+|+|+.|++.+++ +++++++|+ .++++. +++||+|+
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~fD~V~ 146 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRA---ETFGQRKDVRESYDIVT 146 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH---HHHTTCTTTTTCEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccH---HHhcccccccCCccEEE
Confidence 478999999999853 2222577899999999999987764 378999998 666643 57899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCC
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPG 293 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~ 293 (309)
+.. +.++..+++++.++|||||.+++...... . +.+..+.+.+ ...||...+...... +.
T Consensus 147 ~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~--~------------~~~~~~~~~l-~~~g~~~~~~~~~~~-~~ 206 (240)
T 1xdz_A 147 ARA----VARLSVLSELCLPLVKKNGLFVALKAASA--E------------EELNAGKKAI-TTLGGELENIHSFKL-PI 206 (240)
T ss_dssp EEC----CSCHHHHHHHHGGGEEEEEEEEEEECC-C--H------------HHHHHHHHHH-HHTTEEEEEEEEEEC-TT
T ss_pred Eec----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc--h------------HHHHHHHHHH-HHcCCeEeEEEEEec-CC
Confidence 976 46889999999999999999887533211 0 1112223334 447898776665432 22
Q ss_pred CCCCcEEEEEEeCC
Q 021661 294 RSDPMYVVYSRKAS 307 (309)
Q Consensus 294 ~~~p~~~v~a~k~~ 307 (309)
.....++++.+|..
T Consensus 207 ~~~~~~l~~~~k~~ 220 (240)
T 1xdz_A 207 EESDRNIMVIRKIK 220 (240)
T ss_dssp TCCEEEEEEEEECS
T ss_pred CCCceEEEEEEecC
Confidence 33455677777764
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.7e-14 Score=128.23 Aligned_cols=147 Identities=14% Similarity=0.099 Sum_probs=100.3
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
++.+|||||||+|... ....++.+++++|+| .+++.+++ +++++++|+ .+.+++++ ||+|++.
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~-~D~v~~~ 239 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSA---FEVDYGND-YDLVLLP 239 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCT---TTSCCCSC-EEEEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccc---ccCCCCCC-CcEEEEc
Confidence 4689999999998543 334567899999999 99987765 388999999 66666554 9999999
Q ss_pred cchhccCCH--HHHHHHHHhhcccCcEEEEEecC-c-----chhHHHhhhhh----cCCCCchhHhHHHHHHHhCCCCCC
Q 021661 216 VSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN-R-----CFWTKAISIWT----STGDADHVMIVGAYFHYAGGYEPP 283 (309)
Q Consensus 216 ~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~~-~-----~~~~~~~~~w~----~~~~~~h~~~~~~~f~~~~Gf~~~ 283 (309)
++++|+++. .++++++.++|||||.+++.... . ......++.+. ..+......-+.+.+ .++||+.+
T Consensus 240 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll-~~aGf~~~ 318 (335)
T 2r3s_A 240 NFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMF-SNAGFSHS 318 (335)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHH-HHTTCSEE
T ss_pred chhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHH-HHCCCCee
Confidence 999999654 79999999999999977665332 1 11222222211 122222233444555 45899987
Q ss_pred ceeeccCCCCCCCCcEEEEEEeC
Q 021661 284 QAVDISPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 284 ~~~~~~~~~~~~~p~~~v~a~k~ 306 (309)
++.... .+..+|+++++
T Consensus 319 ~~~~~~------~~~~~i~~~~~ 335 (335)
T 2r3s_A 319 QLHSLP------TTQQQVIVAYK 335 (335)
T ss_dssp EEECCT------TSSSEEEEEEC
T ss_pred eEEECC------CCceeEEEecC
Confidence 765532 23456777654
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=127.91 Aligned_cols=144 Identities=10% Similarity=0.000 Sum_probs=99.6
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
+..+|||||||+|... ....|..+++++|+ +.+++.+++ ++++..+|+ . .+++. +||+|++.
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~-~~~p~-~~D~v~~~ 242 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSF---F-DPLPA-GAGGYVLS 242 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---T-SCCCC-SCSEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCC---C-CCCCC-CCcEEEEe
Confidence 4579999999999543 34567889999999 999987763 489999998 4 34444 79999999
Q ss_pred cchhccCCH--HHHHHHHHhhcccCcEEEEEecC-cc----hhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 216 VSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN-RC----FWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 216 ~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~~-~~----~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
+++||++++ .++|++++++|||||.++|.... +. ............+......-+.+.+ .++||+.+++...
T Consensus 243 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll-~~aGf~~~~~~~~ 321 (332)
T 3i53_A 243 AVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELA-AQAGLAVRAAHPI 321 (332)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCCCCHHHHHHHH-HHTTEEEEEEEEC
T ss_pred hhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCCCCHHHHHHHH-HHCCCEEEEEEEC
Confidence 999999885 79999999999999988775432 11 1111111111112222233444555 5699998777653
Q ss_pred cCCCCCCCCcEEEEEEe
Q 021661 289 SPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 289 ~~~~~~~~p~~~v~a~k 305 (309)
. . ..++.+||
T Consensus 322 ~------~-~~vie~r~ 331 (332)
T 3i53_A 322 S------Y-VSIVEMTA 331 (332)
T ss_dssp S------S-SEEEEEEE
T ss_pred C------C-cEEEEEee
Confidence 2 1 56777776
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-14 Score=117.68 Aligned_cols=95 Identities=19% Similarity=0.063 Sum_probs=74.4
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|... ....+..+|+|+|+|+.|++.++++ + ++++|+. +.++..+++||+|++
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~--~~~~~~~~~~D~i~~ 100 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAP--RAFDDVPDNPDVIFI 100 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTT--GGGGGCCSCCSEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchH--hhhhccCCCCCEEEE
Confidence 45789999999998543 3445678999999999999987642 4 7777762 234433378999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
..+++| ..+++++.++|||||.+++.....
T Consensus 101 ~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 101 GGGLTA----PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp CC-TTC----TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred CCcccH----HHHHHHHHHhcCCCCEEEEEeecc
Confidence 999987 789999999999999999887653
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.4e-14 Score=131.27 Aligned_cols=153 Identities=12% Similarity=0.050 Sum_probs=101.6
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|... ....+..+++++|+ +.|++.+++ +++++++|+ .+ +++. .||+|++
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~-~~~~-~~D~v~~ 254 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF---FK-PLPV-TADVVLL 254 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---TS-CCSC-CEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCC---CC-cCCC-CCCEEEE
Confidence 45789999999999543 33456789999999 999987764 488999998 43 3333 3999999
Q ss_pred ccchhccCCHH--HHHHHHHhhcccCcEEEEEec--C-c----chhHHHhhhhh---cCCCCchhHhHHHHHHHhCCCCC
Q 021661 215 VVSVDYLTKPI--EVFKEMCQVLKPGGLAIVSFS--N-R----CFWTKAISIWT---STGDADHVMIVGAYFHYAGGYEP 282 (309)
Q Consensus 215 ~~vl~~l~d~~--~~l~~i~rvLkpGG~lii~~~--~-~----~~~~~~~~~w~---~~~~~~h~~~~~~~f~~~~Gf~~ 282 (309)
..++||+++.. ++|+++.++|||||.++|... . + ..+...++.+. ..+......-+.+.+ .++||+.
T Consensus 255 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~aGf~~ 333 (374)
T 1qzz_A 255 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLA-GSAGLAL 333 (374)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH-HTTTEEE
T ss_pred eccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHHhCCCcCCCHHHHHHHH-HHCCCce
Confidence 99999998774 899999999999997776543 1 1 11122222211 112222233444455 4689998
Q ss_pred CceeeccCCCCCCCCcEEEEEEeCC
Q 021661 283 PQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 283 ~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
+++..... ....-+..+|.++|+.
T Consensus 334 ~~~~~~~~-~~~~~~~~~i~~~~~~ 357 (374)
T 1qzz_A 334 ASERTSGS-TTLPFDFSILEFTAVS 357 (374)
T ss_dssp EEEEEECC-SSCSSCEEEEEEEECC
T ss_pred EEEEECCC-CcccCCcEEEEEEECc
Confidence 87776521 1001122788888874
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-14 Score=123.68 Aligned_cols=141 Identities=15% Similarity=0.136 Sum_probs=93.8
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHh----hCC--CCCcEEEecCCCCCC---CCCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELK----RNP--VLTEYVVQDLNLNPK---LPFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~----~a~--~~i~~~~~D~~~~~~---lp~~~~sfDlVi 213 (309)
.++.+|||+|||+|... ... .+..+|+|+|+|+.|++ .++ .+++++++|+ .+ ++..+++||+|+
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~---~~~~~~~~~~~~~D~V~ 152 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDA---RHPHKYRMLIAMVDVIF 152 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCT---TCGGGGGGGCCCEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEccc---CChhhhcccCCcEEEEE
Confidence 45789999999999543 222 24579999999977544 443 3588999999 55 455678899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhH---HHHHHHhCCCCCCceeeccC
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIV---GAYFHYAGGYEPPQAVDISP 290 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~---~~~f~~~~Gf~~~~~~~~~~ 290 (309)
+... .......++.++.++|||||.+++++..... ... ......+ .+.+ .++||+..+...+.+
T Consensus 153 ~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~---------~~~-~~~~~~~~~~~~~l-~~~Gf~~~~~~~~~~ 219 (233)
T 2ipx_A 153 ADVA--QPDQTRIVALNAHTFLRNGGHFVISIKANCI---------DST-ASAEAVFASEVKKM-QQENMKPQEQLTLEP 219 (233)
T ss_dssp ECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH---------CSS-SCHHHHHHHHHHTT-GGGTEEEEEEEECTT
T ss_pred EcCC--CccHHHHHHHHHHHHcCCCeEEEEEEccccc---------ccC-CCHHHHHHHHHHHH-HHCCCceEEEEecCC
Confidence 9655 2222355689999999999999987543110 000 0111111 1223 568999888777666
Q ss_pred CCCCCCCcEEEEEEeC
Q 021661 291 NPGRSDPMYVVYSRKA 306 (309)
Q Consensus 291 ~~~~~~p~~~v~a~k~ 306 (309)
.+ ...++|+++|.
T Consensus 220 ~~---~~~~~v~~~~~ 232 (233)
T 2ipx_A 220 YE---RDHAVVVGVYR 232 (233)
T ss_dssp TS---SSEEEEEEEEC
T ss_pred cc---CCcEEEEEEeC
Confidence 44 45688999885
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=119.09 Aligned_cols=155 Identities=11% Similarity=0.041 Sum_probs=99.5
Q ss_pred HHHHHhhCC-CCCCCCCeEEEECCCcchhcc----CCCCCCeEEEEeCCHHHHh----hC--CCCCcEEEecCCCCCCCC
Q 021661 135 TKYYSEVFP-PSNTPGVSILDLCSSWVSHFP----PGYKQDRIVGMGMNEEELK----RN--PVLTEYVVQDLNLNPKLP 203 (309)
Q Consensus 135 ~~~~~~~l~-~~~~~~~~ILDiGcG~g~~~~----~~~~~~~v~giD~S~~~l~----~a--~~~i~~~~~D~~~~~~lp 203 (309)
...+...+. ....++.+|||+|||+|.... ...+.++|+|+|+|+.|++ .+ +.++.++++|+ ....
T Consensus 62 a~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da---~~~~ 138 (232)
T 3id6_C 62 AGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADA---RFPQ 138 (232)
T ss_dssp HHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCT---TCGG
T ss_pred HHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEccc---ccch
Confidence 344444443 124678999999999985432 2346789999999998853 33 34689999998 4432
Q ss_pred ---CCCCceeEEEeccchhccCCHHHHH-HHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCC
Q 021661 204 ---FEDNSFDVITNVVSVDYLTKPIEVF-KEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGG 279 (309)
Q Consensus 204 ---~~~~sfDlVis~~vl~~l~d~~~~l-~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~G 279 (309)
...++||+|++.... ++..+.+ ..+.+.|||||.|++++..... .+.. ...+........+. +.|
T Consensus 139 ~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~------d~t~-~~~e~~~~~~~~L~-~~g 207 (232)
T 3id6_C 139 SYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSI------DVTK-DPKEIYKTEVEKLE-NSN 207 (232)
T ss_dssp GTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC-------------C-CSSSSTTHHHHHHH-HTT
T ss_pred hhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCc------ccCC-CHHHHHHHHHHHHH-HCC
Confidence 124689999998654 4555554 5666699999999988643321 1111 12222233344443 578
Q ss_pred CCCCceeeccCCCCCCCCcEEEEEEeC
Q 021661 280 YEPPQAVDISPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 280 f~~~~~~~~~~~~~~~~p~~~v~a~k~ 306 (309)
|+..+.+++.|.. ...+.|+++|.
T Consensus 208 f~~~~~~~l~p~~---~~h~~v~~~~~ 231 (232)
T 3id6_C 208 FETIQIINLDPYD---KDHAIVLSKYK 231 (232)
T ss_dssp EEEEEEEECTTTC---SSCEEEEEEEC
T ss_pred CEEEEEeccCCCc---CceEEEEEEeC
Confidence 9999988877743 45688899885
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8e-13 Score=124.09 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=101.4
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
.+..+|||||||+|.. +...+|..+++++|+ +.|++.+++ +++++++|+ .+ +++++ |+|++..++||+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~p~~--D~v~~~~vlh~~ 274 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDM---FD-GVPKG--DAIFIKWICHDW 274 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCT---TT-CCCCC--SEEEEESCGGGB
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCC---CC-CCCCC--CEEEEechhhcC
Confidence 3468999999999954 344568889999999 999999886 489999998 44 55544 999999999999
Q ss_pred CCH--HHHHHHHHhhcccCcEEEEEecC-cc----hh----HHHhhhh----hcCCCCchhHhHHHHHHHhCCCCCCcee
Q 021661 222 TKP--IEVFKEMCQVLKPGGLAIVSFSN-RC----FW----TKAISIW----TSTGDADHVMIVGAYFHYAGGYEPPQAV 286 (309)
Q Consensus 222 ~d~--~~~l~~i~rvLkpGG~lii~~~~-~~----~~----~~~~~~w----~~~~~~~h~~~~~~~f~~~~Gf~~~~~~ 286 (309)
++. .++|++++++|||||.++|.... +. .. ....+.+ ...+......-+.+.+ +++||+.+++.
T Consensus 275 ~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll-~~AGF~~v~~~ 353 (368)
T 3reo_A 275 SDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALA-MASGFRGFKVA 353 (368)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHH-HHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHH-HHCCCeeeEEE
Confidence 865 48999999999999977664321 11 00 1111111 1122222233445556 56999988877
Q ss_pred eccCCCCCCCCcEEEEEEeC
Q 021661 287 DISPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 287 ~~~~~~~~~~p~~~v~a~k~ 306 (309)
.... +..++.++|.
T Consensus 354 ~~~~------~~~vie~~k~ 367 (368)
T 3reo_A 354 SCAF------NTYVMEFLKT 367 (368)
T ss_dssp EEET------TEEEEEEECC
T ss_pred EeCC------CcEEEEEEeC
Confidence 7543 4567777775
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-14 Score=119.49 Aligned_cols=136 Identities=15% Similarity=0.154 Sum_probs=94.6
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCC-CceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFED-NSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~-~sfDlVis~ 215 (309)
.++.+|||+|||+|..... +....+|+|+|+|+.+++.+++ ++++.++|+ .. ++++ ++||+|++.
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~-~~~~~~~~D~v~~~ 107 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA---PE-ALCKIPDIDIAVVG 107 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH---HH-HHTTSCCEEEEEES
T ss_pred CCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCH---HH-hcccCCCCCEEEEC
Confidence 4578999999999854321 1122799999999999987765 467888887 44 2222 579999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCC--
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPG-- 293 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~-- 293 (309)
.+++ +...+++++.++|||||.+++...+... ...+.+.+ ...|| .++.+.+....+
T Consensus 108 ~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~~----------------~~~~~~~l-~~~g~-~~~~~~~~~~~~~~ 166 (192)
T 1l3i_A 108 GSGG---ELQEILRIIKDKLKPGGRIIVTAILLET----------------KFEAMECL-RDLGF-DVNITELNIARGRA 166 (192)
T ss_dssp CCTT---CHHHHHHHHHHTEEEEEEEEEEECBHHH----------------HHHHHHHH-HHTTC-CCEEEEEEEEEEEE
T ss_pred CchH---HHHHHHHHHHHhcCCCcEEEEEecCcch----------------HHHHHHHH-HHCCC-ceEEEEEEcccCeE
Confidence 8775 4689999999999999999887664221 12233344 34788 566665532211
Q ss_pred --------CCCCcEEEEEEeCC
Q 021661 294 --------RSDPMYVVYSRKAS 307 (309)
Q Consensus 294 --------~~~p~~~v~a~k~~ 307 (309)
...|.++++++|+.
T Consensus 167 ~~~~~~~~~~~p~~l~~~~k~~ 188 (192)
T 1l3i_A 167 LDRGTMMVSRNPVALIYTGVSH 188 (192)
T ss_dssp ETTEEEEEECCCEEEEECCC--
T ss_pred ecCceeecCCCCEEEEEEeccc
Confidence 25688999999874
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.48 E-value=5e-14 Score=124.46 Aligned_cols=97 Identities=25% Similarity=0.411 Sum_probs=77.0
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEecc-c
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVV-S 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~~-v 217 (309)
.++.+|||+|||+|.... .+..+.+|+|+|+|+.|++.+++ +++++++|+ .+++++ ++||+|++.. +
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~---~~~~~~-~~fD~v~~~~~~ 115 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV---LEIAFK-NEFDAVTMFFST 115 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG---GGCCCC-SCEEEEEECSSG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECCh---hhcccC-CCccEEEEcCCc
Confidence 346899999999995432 22236799999999999998765 378999999 677654 6799999874 4
Q ss_pred hhccC--CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 218 VDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 218 l~~l~--d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++++. +..++++++.++|||||.+++++++
T Consensus 116 ~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 116 IMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 55543 5678999999999999999998876
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-14 Score=126.20 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=78.0
Q ss_pred CCCCeEEEECCCcchhcc---CC-CCCCeEEEEeCCHH------HHhhCCC---------CCcEEEec-CCCCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFP---PG-YKQDRIVGMGMNEE------ELKRNPV---------LTEYVVQD-LNLNPKLPFED 206 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~-~~~~~v~giD~S~~------~l~~a~~---------~i~~~~~D-~~~~~~lp~~~ 206 (309)
.++.+|||||||+|.... .. .+..+|+|+|+|+. |++.+++ +++++++| .. ...+|+++
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~ 120 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS-DDLGPIAD 120 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT-TCCGGGTT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh-hccCCCCC
Confidence 457899999999995432 22 24579999999997 7876543 37888888 31 15677788
Q ss_pred CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 207 NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 207 ~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++||+|++..+++|++++..+++.+.++++|||.+++...
T Consensus 121 ~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~ 160 (275)
T 3bkx_A 121 QHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEW 160 (275)
T ss_dssp CCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred CCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 9999999999999999999888888888888998888654
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=119.28 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=72.9
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||||||+|... ..+..+.+|+|+|+|+.|++.|++ +++++++|+ .+......+||+|++..
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~~~~~~~~D~v~~~~ 130 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA---PAALADLPLPEAVFIGG 130 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT---TGGGTTSCCCSEEEECS
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch---hhhcccCCCCCEEEECC
Confidence 45789999999999543 111227899999999999987764 378899998 55322335799999887
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++ ++. +++++.++|||||.++++....
T Consensus 131 ~~----~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 131 GG----SQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp CC----CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred cc----cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 54 566 9999999999999999987653
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-14 Score=128.28 Aligned_cols=93 Identities=10% Similarity=0.016 Sum_probs=76.4
Q ss_pred CCCCCeEEEECCCcchh--c-cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 146 NTPGVSILDLCSSWVSH--F-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~--~-~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
..++.+|||||||+|.. + ....++++|+|+|+|++|++.|++ +++++++|+ .+++ +++||+|++
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa---~~l~--d~~FDvV~~ 194 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE---TVID--GLEFDVLMV 194 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG---GGGG--GCCCSEEEE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch---hhCC--CCCcCEEEE
Confidence 35689999999997632 2 222468899999999999998875 378999999 6665 688999998
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
... .+++.++++++.++|||||.+++...
T Consensus 195 ~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 195 AAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp CTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 654 57899999999999999999988754
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-14 Score=126.55 Aligned_cols=97 Identities=11% Similarity=0.012 Sum_probs=76.7
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC-----CCcEEEecCCCCCCCCCCC-----CceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFED-----NSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~-----~i~~~~~D~~~~~~lp~~~-----~sfDlVis~ 215 (309)
.++.+|||||||+|...... ..+.+|+|+|+|+.|++.+++ +++++++|+ .+++... .+||+|++.
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDG---LVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCT---TCHHHHHHHHHHHCSCEEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcc---cccccccccccccCccEEEEc
Confidence 45789999999999543221 123389999999999998755 488999999 6654322 249999999
Q ss_pred cchhccC--CHHHHHHHHHhhcccCcEEEEEec
Q 021661 216 VSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 216 ~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+++|++ +...+++++.++|||||.+++...
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 164 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9999998 789999999999999997655543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.47 E-value=7.5e-14 Score=120.83 Aligned_cols=98 Identities=14% Similarity=0.100 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
++.+|||||||+|... ....+..+|+|+|+|+.+++.|++ +++++++|+ ..++ +++++||+|++
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~D~i~~ 117 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG---SDLTDYFEDGEIDRLYL 117 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS---SCGGGTSCTTCCSEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCH---HHHHhhcCCCCCCEEEE
Confidence 3679999999999543 344567899999999999987754 478999999 6676 67789999999
Q ss_pred ccchhccC--------CHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VVSVDYLT--------KPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~vl~~l~--------d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++...+.. ....+++++.++|||||.+++.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 159 (214)
T 1yzh_A 118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR 159 (214)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH
T ss_pred ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH
Confidence 87654432 23689999999999999999987653
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=122.25 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=84.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPF 204 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~ 204 (309)
...+.+.+...++ .++.+|||||||+|... ....++.+|+|+|+|+.|++.++++ +.+.++|+ ..+|+
T Consensus 71 ~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~~~ 144 (269)
T 1p91_A 71 RDAIVAQLRERLD---DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRLPF 144 (269)
T ss_dssp HHHHHHHHHHHSC---TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT---TSCSB
T ss_pred HHHHHHHHHHhcC---CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcch---hhCCC
Confidence 3445566666553 24789999999988543 3333577999999999999988753 78999999 78888
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchh
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFW 251 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~ 251 (309)
++++||+|+++.+. ..++++.++|||||.+++.+++....
T Consensus 145 ~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l~~~~~~~~~~ 184 (269)
T 1p91_A 145 SDTSMDAIIRIYAP-------CKAEELARVVKPGGWVITATPGPRHL 184 (269)
T ss_dssp CTTCEEEEEEESCC-------CCHHHHHHHEEEEEEEEEEEECTTTT
T ss_pred CCCceeEEEEeCCh-------hhHHHHHHhcCCCcEEEEEEcCHHHH
Confidence 88999999997663 35899999999999999988875443
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=116.66 Aligned_cols=107 Identities=17% Similarity=0.102 Sum_probs=81.8
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCCC
Q 021661 136 KYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPF 204 (309)
Q Consensus 136 ~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp~ 204 (309)
+.+.+.+.. .++.+|||+|||+|..... +..+.+|+|+|+|+.+++.++++ ++++++|+ .. +.
T Consensus 42 ~~l~~~~~~--~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~---~~-~~ 115 (194)
T 1dus_A 42 KILVENVVV--DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---YE-NV 115 (194)
T ss_dssp HHHHHHCCC--CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---TT-TC
T ss_pred HHHHHHccc--CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECch---hc-cc
Confidence 334444442 3578999999999854321 11267999999999999876642 78889998 44 33
Q ss_pred CCCceeEEEeccchhc-cCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 205 EDNSFDVITNVVSVDY-LTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~-l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++++||+|+++..+++ ..+...+++++.++|||||.+++..++.
T Consensus 116 ~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred ccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 4678999999998887 3567899999999999999999987754
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-14 Score=129.06 Aligned_cols=95 Identities=17% Similarity=0.276 Sum_probs=75.6
Q ss_pred CCeEEEECCCcchh-------ccCCCC----CCeEEEEeCCHHHHhhCCCC-----------------------------
Q 021661 149 GVSILDLCSSWVSH-------FPPGYK----QDRIVGMGMNEEELKRNPVL----------------------------- 188 (309)
Q Consensus 149 ~~~ILDiGcG~g~~-------~~~~~~----~~~v~giD~S~~~l~~a~~~----------------------------- 188 (309)
+.+|||+|||+|.. +....+ +.+|+|+|+|++||+.|+++
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 57999999999951 111111 35999999999999987542
Q ss_pred ----------CcEEEecCCCCCCCCCC-CCceeEEEeccchhccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 189 ----------TEYVVQDLNLNPKLPFE-DNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 ----------i~~~~~D~~~~~~lp~~-~~sfDlVis~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+.|.++|+ .+.|++ .++||+|+|.++++|+++. .++++++++.|||||+|++...
T Consensus 186 ~~v~~~lr~~V~F~~~dl---~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s 253 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNL---LEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS 253 (274)
T ss_dssp EEECHHHHTTEEEEECCT---TCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred eeechhhcccCeEEeccc---CCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 56788888 565554 5789999999999999765 7999999999999999998643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-14 Score=136.32 Aligned_cols=95 Identities=15% Similarity=0.263 Sum_probs=76.7
Q ss_pred CCCeEEEECCC------cc-hhc--c-CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCC------CCceeE
Q 021661 148 PGVSILDLCSS------WV-SHF--P-PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFE------DNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG------~g-~~~--~-~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~------~~sfDl 211 (309)
++.+||||||| +| ..+ . ...+.++|+|+|+|+.|.. ...+++++++|+ .++++. +++||+
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~-~~~rI~fv~GDa---~dlpf~~~l~~~d~sFDl 291 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV-DELRIRTIQGDQ---NDAEFLDRIARRYGPFDI 291 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG-CBTTEEEEECCT---TCHHHHHHHHHHHCCEEE
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh-cCCCcEEEEecc---cccchhhhhhcccCCccE
Confidence 47899999999 44 322 2 2247889999999999953 334699999999 888776 689999
Q ss_pred EEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|++.. .++..+..++|++++++|||||+++++...
T Consensus 292 Visdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 292 VIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp EEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 99875 466778899999999999999999998654
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=120.15 Aligned_cols=135 Identities=17% Similarity=0.197 Sum_probs=98.5
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
.++.+|||+|||+|... ... .+..+|+++|+|+.+++.|+++ ++++++|+ .+ ++++++||+|+
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~-~~~~~~~D~v~ 167 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDI---YE-GIEEENVDHVI 167 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCG---GG-CCCCCSEEEEE
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECch---hh-ccCCCCcCEEE
Confidence 45889999999998543 223 4578999999999999987653 78899998 43 35677899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCC--CCCCceeeccCC
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGG--YEPPQAVDISPN 291 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~G--f~~~~~~~~~~~ 291 (309)
+ +.+++..+++++.++|||||.+++..+.... ...+.+.+ ...| |..+++.....+
T Consensus 168 ~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~----------------~~~~~~~l-~~~g~~f~~~~~~e~~~r 225 (255)
T 3mb5_A 168 L-----DLPQPERVVEHAAKALKPGGFFVAYTPCSNQ----------------VMRLHEKL-REFKDYFMKPRTINVLVF 225 (255)
T ss_dssp E-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHHH----------------HHHHHHHH-HHTGGGBSCCEEECCCCC
T ss_pred E-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHHH----------------HHHHHHHH-HHcCCCccccEEEEEeee
Confidence 8 4668889999999999999999887654321 12223334 3467 888887776544
Q ss_pred CC-------------CCCCcEEEEEEeCC
Q 021661 292 PG-------------RSDPMYVVYSRKAS 307 (309)
Q Consensus 292 ~~-------------~~~p~~~v~a~k~~ 307 (309)
.+ ....-|+|.|||..
T Consensus 226 ~~~~~~~~~rp~~~~~~htg~l~~ark~~ 254 (255)
T 3mb5_A 226 DQEVKKECMRPRTTALVHTGYITFARRIL 254 (255)
T ss_dssp CEEEETTEEEECSCCCCCSCEEEEEEBCC
T ss_pred eeEecCCccCCCcccccccEEEEEEEEec
Confidence 21 12344999999974
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=130.46 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPK 201 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~ 201 (309)
..+.+.+.+.+.+.....++.+|||+|||+|.... .+..+.+|+|+|+|+.|++.++++ ++++++|+ .+
T Consensus 215 ~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~---~~ 291 (381)
T 3dmg_A 215 ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDV---DE 291 (381)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECST---TT
T ss_pred HHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcch---hh
Confidence 33444555544442112347899999999885432 122267999999999999987763 78999999 67
Q ss_pred CCCCCCceeEEEeccchhc-----cCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 202 LPFEDNSFDVITNVVSVDY-----LTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 202 lp~~~~sfDlVis~~vl~~-----l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
.+.++++||+|+++..+++ ..+..++++++.++|||||.+++......
T Consensus 292 ~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~l 344 (381)
T 3dmg_A 292 ALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFL 344 (381)
T ss_dssp TSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTTS
T ss_pred ccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCCC
Confidence 6666689999999999888 44568999999999999999998866543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=115.93 Aligned_cols=143 Identities=11% Similarity=0.107 Sum_probs=93.5
Q ss_pred CCCeEEEECCCcchhcc---CC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCC-CCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHFP---PG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLP-FEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~---~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp-~~~~sfDlVi 213 (309)
++.+|||+|||+|.... .. .+.++|+|+|+|+.|++.+++ +++++++|+ ..++ +.+++||+|+
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~fD~v~ 98 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH---QNMDKYIDCPVKAVM 98 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG---GGGGGTCCSCEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH---HHHhhhccCCceEEE
Confidence 47899999999995432 22 245799999999999988754 378999998 6664 5568899999
Q ss_pred eccchh---------ccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH--HhCCCCC
Q 021661 214 NVVSVD---------YLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YAGGYEP 282 (309)
Q Consensus 214 s~~vl~---------~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~--~~~Gf~~ 282 (309)
++..+. +..+..++++++.++|||||.+++....... ........+.+++. ...+|..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~v 167 (197)
T 3eey_A 99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGD-----------TGFEEKEKVLEFLKGVDQKKFIV 167 (197)
T ss_dssp EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTT-----------TBSHHHHHHHHHHTTSCTTTEEE
T ss_pred EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCC-----------CcHHHHHHHHHHHHhCCCCcEEE
Confidence 987551 1113468999999999999998876532110 01112233344443 2245554
Q ss_pred CceeeccCCCCCCCCcEEEEEEeCC
Q 021661 283 PQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 283 ~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
.....+ .....|-++++-+|.+
T Consensus 168 ~~~~~~---~~~~~pp~~~~~~~~~ 189 (197)
T 3eey_A 168 QRTDFI---NQANCPPILVCIEKIS 189 (197)
T ss_dssp EEEEET---TCCSCCCEEEEEEECC
T ss_pred EEEEec---cCccCCCeEEEEEEcc
Confidence 333332 2334566777777765
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=128.06 Aligned_cols=154 Identities=11% Similarity=0.078 Sum_probs=102.1
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|.. +....+..+++++|+ +.+++.+++ +++++++|+ .+ +++. .||+|++
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~-~~~~-~~D~v~~ 255 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF---FE-PLPR-KADAIIL 255 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT---TS-CCSS-CEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCC---CC-CCCC-CccEEEE
Confidence 4478999999999954 333456789999999 999987664 488999998 33 3333 4999999
Q ss_pred ccchhccCCH--HHHHHHHHhhcccCcEEEEEecC--c----chhHHHhhhhh---cCCCCchhHhHHHHHHHhCCCCCC
Q 021661 215 VVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN--R----CFWTKAISIWT---STGDADHVMIVGAYFHYAGGYEPP 283 (309)
Q Consensus 215 ~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~~--~----~~~~~~~~~w~---~~~~~~h~~~~~~~f~~~~Gf~~~ 283 (309)
..++||+++. .++++++.++|||||.+++.... + ..+...++.+. ..+......-+.+.+ .++||+.+
T Consensus 256 ~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll-~~aGf~~~ 334 (360)
T 1tw3_A 256 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLA-ASAGLVVE 334 (360)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHH-HHTTEEEE
T ss_pred cccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhhcCCcCCCHHHHHHHH-HHCCCeEE
Confidence 9999999876 58999999999999987765433 1 11222222221 112222233444455 45899988
Q ss_pred ceeeccCCCCCCCCcEEEEEEeCCC
Q 021661 284 QAVDISPNPGRSDPMYVVYSRKAST 308 (309)
Q Consensus 284 ~~~~~~~~~~~~~p~~~v~a~k~~~ 308 (309)
++....... ......+|.++|+.+
T Consensus 335 ~~~~~~~~~-~~~~~~~i~~~~~~~ 358 (360)
T 1tw3_A 335 EVRQLPSPT-IPYDLSLLVLAPAAT 358 (360)
T ss_dssp EEEEEECSS-SSCEEEEEEEEEC--
T ss_pred EEEeCCCCc-ccCccEEEEEEeCCC
Confidence 777653210 011257888988754
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=126.38 Aligned_cols=144 Identities=14% Similarity=0.101 Sum_probs=99.7
Q ss_pred CeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 150 VSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 150 ~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.+|||||||+|.. +....+..+++++|+ +.+++.+++ +++++++|+ .+ +++ ++||+|++..+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~-~~~-~~~D~v~~~~v 242 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDM---LQ-EVP-SNGDIYLLSRI 242 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCT---TT-CCC-SSCSEEEEESC
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCC---CC-CCC-CCCCEEEEchh
Confidence 8999999999954 333457789999999 999887654 388999998 44 444 57999999999
Q ss_pred hhccCCHH--HHHHHHHhhcccCcEEEEEecC-----cchhHHHhhh--hh-cCCCCchhHhHHHHHHHhCCCCCCceee
Q 021661 218 VDYLTKPI--EVFKEMCQVLKPGGLAIVSFSN-----RCFWTKAISI--WT-STGDADHVMIVGAYFHYAGGYEPPQAVD 287 (309)
Q Consensus 218 l~~l~d~~--~~l~~i~rvLkpGG~lii~~~~-----~~~~~~~~~~--w~-~~~~~~h~~~~~~~f~~~~Gf~~~~~~~ 287 (309)
+||+++.. +++++++++|||||.++|.... .......++. +. ..+......-+.+.+ .++||+.+++..
T Consensus 243 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll-~~aGf~~~~~~~ 321 (334)
T 2ip2_A 243 IGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLL-GRGGFAVERIVD 321 (334)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHH-HHTTEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHH-HHCCCceeEEEE
Confidence 99998766 9999999999999988776332 1111222221 11 112222333444455 458999877765
Q ss_pred ccCCCCCCCCcEEEEEEeC
Q 021661 288 ISPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 288 ~~~~~~~~~p~~~v~a~k~ 306 (309)
. + .+..+|.++|.
T Consensus 322 ~---~---~~~~~i~~~~~ 334 (334)
T 2ip2_A 322 L---P---METRMIVAARA 334 (334)
T ss_dssp E---T---TTEEEEEEEEC
T ss_pred C---C---CCCEEEEEEeC
Confidence 3 1 34678888874
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-12 Score=121.10 Aligned_cols=145 Identities=12% Similarity=0.065 Sum_probs=99.6
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
.+..+|||||||+|.. +...+|..+++++|+ +.+++.+++ +++++.+|+ .+ |++.+ |+|++..++|++
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~---~~-~~p~~--D~v~~~~vlh~~ 272 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDM---FK-EVPSG--DTILMKWILHDW 272 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCT---TT-CCCCC--SEEEEESCGGGS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCc---CC-CCCCC--CEEEehHHhccC
Confidence 3468999999999954 344568889999999 999998886 489999999 55 65554 999999999999
Q ss_pred CCH--HHHHHHHHhhcccCcEEEEEecC-c-----chhH---HHhhh--h--hcCCCCchhHhHHHHHHHhCCCCCCcee
Q 021661 222 TKP--IEVFKEMCQVLKPGGLAIVSFSN-R-----CFWT---KAISI--W--TSTGDADHVMIVGAYFHYAGGYEPPQAV 286 (309)
Q Consensus 222 ~d~--~~~l~~i~rvLkpGG~lii~~~~-~-----~~~~---~~~~~--w--~~~~~~~h~~~~~~~f~~~~Gf~~~~~~ 286 (309)
++. .++|++++++|||||.++|.... + .... ...+. . ...+......-+.+.+ +++||+.+++.
T Consensus 273 ~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll-~~AGF~~v~~~ 351 (364)
T 3p9c_A 273 SDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALA-RGAGFTGVKST 351 (364)
T ss_dssp CHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHH-HHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHH-HHCCCceEEEE
Confidence 754 58999999999999977664321 1 1000 11111 1 1122222233444555 56999988877
Q ss_pred eccCCCCCCCCcEEEEEEe
Q 021661 287 DISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 287 ~~~~~~~~~~p~~~v~a~k 305 (309)
.... +..++.+.|
T Consensus 352 ~~~~------~~~vie~~k 364 (364)
T 3p9c_A 352 YIYA------NAWAIEFTK 364 (364)
T ss_dssp EEET------TEEEEEEEC
T ss_pred EcCC------ceEEEEEeC
Confidence 6533 345666554
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-13 Score=123.62 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=95.8
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCC-------CCCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNP-------VLTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~-------~~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||||||+|... ....+..+++++|++ .++..++ .+++++++|+ . .+++ +||+|++..
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~~~~~~~~~~~~v~~~~~d~---~-~~~p--~~D~v~~~~ 255 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVARHRLDAPDVAGRWKVVEGDF---L-REVP--HADVHVLKR 255 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHTTCCCCCGGGTTSEEEEECCT---T-TCCC--CCSEEEEES
T ss_pred cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhhcccccccCCCCCeEEEecCC---C-CCCC--CCcEEEEeh
Confidence 44789999999999543 344677899999994 5554322 1388999998 3 3344 799999999
Q ss_pred chhccCCH--HHHHHHHHhhcccCcEEEEEecC-c----chhHHHhhh--hhc-CCCCchhHhHHHHHHHhCCCCCCcee
Q 021661 217 SVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN-R----CFWTKAISI--WTS-TGDADHVMIVGAYFHYAGGYEPPQAV 286 (309)
Q Consensus 217 vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~~-~----~~~~~~~~~--w~~-~~~~~h~~~~~~~f~~~~Gf~~~~~~ 286 (309)
++||+++. .++|++++++|||||.++|.... + .......+. +.. .+......-+.+.+ .++||+.+++.
T Consensus 256 vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll-~~aGf~~~~~~ 334 (348)
T 3lst_A 256 ILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQERTAAELEPLF-TAAGLRLDRVV 334 (348)
T ss_dssp CGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTTSCCCCBHHHHHHHH-HHTTEEEEEEE
T ss_pred hccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcCCCcCCCHHHHHHHH-HHCCCceEEEE
Confidence 99999987 69999999999999988775432 1 111112221 111 12222233444455 56999987776
Q ss_pred eccCCCCCCCCcEEEEEEe
Q 021661 287 DISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 287 ~~~~~~~~~~p~~~v~a~k 305 (309)
. . .....+|.++|
T Consensus 335 ~-~-----~~~~~vie~~p 347 (348)
T 3lst_A 335 G-T-----SSVMSIAVGVP 347 (348)
T ss_dssp E-C-----SSSCEEEEEEE
T ss_pred E-C-----CCCcEEEEEEe
Confidence 6 1 13456666665
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=112.73 Aligned_cols=96 Identities=18% Similarity=0.212 Sum_probs=77.7
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC--------CCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP--------FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp--------~~~~sfDlVis 214 (309)
.++.+|||+|||+|... ... .++.+++|+|+|+ |++. .+++++++|+ .+.+ +++++||+|++
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--~~~~~~~~d~---~~~~~~~~~~~~~~~~~~D~i~~ 94 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--VGVDFLQGDF---RDELVMKALLERVGDSKVQVVMS 94 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--TTEEEEESCT---TSHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--CcEEEEEccc---ccchhhhhhhccCCCCceeEEEE
Confidence 44789999999988543 222 2457999999999 7665 4588999999 6665 66789999999
Q ss_pred ccchhccCCH-----------HHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VVSVDYLTKP-----------IEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~vl~~l~d~-----------~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+.++++..+. ..+++++.++|||||.+++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred CCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 9998888766 799999999999999998876543
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=7.2e-14 Score=125.85 Aligned_cols=136 Identities=15% Similarity=0.205 Sum_probs=97.0
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
.++.+|||+|||+|... ... .+..+|+|+|+|+.+++.+++ +++++++|+ .+ ++++++||+|+
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~---~~-~~~~~~fD~Vi 184 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI---AD-FISDQMYDAVI 184 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT---TT-CCCSCCEEEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECch---hc-cCcCCCccEEE
Confidence 55789999999988543 222 457899999999999986543 477889998 54 55667899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCCC
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNPG 293 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~~ 293 (309)
+ +++++..+++++.++|||||.+++..++..... .+.+.+ ...||..+++.......+
T Consensus 185 ~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~----------------~~~~~l-~~~Gf~~~~~~~~~~~~~ 242 (275)
T 1yb2_A 185 A-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSE----------------KTVLSL-SASGMHHLETVELMKRRI 242 (275)
T ss_dssp E-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHH----------------HHHHHS-GGGTEEEEEEEEEEECCC
T ss_pred E-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHHH----------------HHHHHH-HHCCCeEEEEEEEeccee
Confidence 8 577889999999999999999999876532111 112223 236677666665322211
Q ss_pred -------------CCCCcEEEEEEeCCC
Q 021661 294 -------------RSDPMYVVYSRKAST 308 (309)
Q Consensus 294 -------------~~~p~~~v~a~k~~~ 308 (309)
...+.|+++|||.+.
T Consensus 243 ~~~~~~~rp~~~~~~~~~~li~ark~~~ 270 (275)
T 1yb2_A 243 LVREGATRPASDDLTHTAFITFAIKKSG 270 (275)
T ss_dssp CCCTTCCCCGGGGSCEEEEEEEEEECCS
T ss_pred EecCCccccccccCCCcEEEEEEEehhc
Confidence 234679999999864
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-14 Score=121.93 Aligned_cols=99 Identities=13% Similarity=0.092 Sum_probs=78.1
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
++.+|||||||+|... ....+..+|+|+|+|+.|++.|++ +++++++|+ ..++ +++++||.|++
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~---~~l~~~~~~~~~d~v~~ 114 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA---DTLTDVFEPGEVKRVYL 114 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG---GGHHHHCCTTSCCEEEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCH---HHHHhhcCcCCcCEEEE
Confidence 3679999999999543 334578899999999999987754 478999999 6665 66789999998
Q ss_pred ccchhccCC--------HHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 215 VVSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 215 ~~vl~~l~d--------~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
++...|... ...+++++.++|||||.+++.+.+..
T Consensus 115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~ 157 (213)
T 2fca_A 115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG 157 (213)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH
T ss_pred ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHH
Confidence 765443321 36899999999999999999876543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=121.99 Aligned_cols=139 Identities=19% Similarity=0.164 Sum_probs=97.6
Q ss_pred CCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
++.+|||+|||+|.... ......+|+|+|+++.+++.|+++ ++++++|+ .+++ +++++||+|++
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~---~~~~~~~~~~~fD~Ii~ 125 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDL---KKITDLIPKERADIVTC 125 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCG---GGGGGTSCTTCEEEEEE
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcH---HHhhhhhccCCccEEEE
Confidence 57899999999985432 122234999999999999987653 78899998 5554 45789999999
Q ss_pred ccchhcc--------------------CCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHH
Q 021661 215 VVSVDYL--------------------TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYF 274 (309)
Q Consensus 215 ~~vl~~l--------------------~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f 274 (309)
+..+... .+...+++.+.++|||||.+++..+.. ...-+...+
T Consensus 126 npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------------~~~~~~~~l 188 (259)
T 3lpm_A 126 NPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE-----------------RLLDIIDIM 188 (259)
T ss_dssp CCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT-----------------THHHHHHHH
T ss_pred CCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH-----------------HHHHHHHHH
Confidence 7543322 124679999999999999988854321 111222333
Q ss_pred HHhCCCCCCceeeccCCCCCCCCcEEEEEEeCC
Q 021661 275 HYAGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 275 ~~~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
...||...++..+.+.++......++.++|.+
T Consensus 189 -~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~~ 220 (259)
T 3lpm_A 189 -RKYRLEPKRIQFVHPRSDREANTVLVEGIKDG 220 (259)
T ss_dssp -HHTTEEEEEEEEEESSTTSCCSEEEEEEEETC
T ss_pred -HHCCCceEEEEEeecCCCCCcEEEEEEEEeCC
Confidence 34688888887777777666667778788753
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-14 Score=122.76 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=74.8
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
..+|||||||+|... ....|..+|+|+|+|+.|++.++++ .++...|. ... .+.++||+|++..+|
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~---~~~-~~~~~~DvVLa~k~L 125 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNK---ESD-VYKGTYDVVFLLKML 125 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECC---HHH-HTTSEEEEEEEETCH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecc---ccc-CCCCCcChhhHhhHH
Confidence 789999999999543 3446788999999999999988764 24555776 333 356789999999999
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|++.+.+..+.++.+.|||||++| +++
T Consensus 126 HlL~~~~~al~~v~~~L~pggvfI-Sfp 152 (200)
T 3fzg_A 126 PVLKQQDVNILDFLQLFHTQNFVI-SFP 152 (200)
T ss_dssp HHHHHTTCCHHHHHHTCEEEEEEE-EEE
T ss_pred HhhhhhHHHHHHHHHHhCCCCEEE-EeC
Confidence 999777788889999999998765 445
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.7e-13 Score=124.67 Aligned_cols=144 Identities=9% Similarity=0.013 Sum_probs=98.5
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
+..+|||||||+|... ...+|+.+++++|+ +.|++.+++ +++++++|+ .. +++ .||+|++..++||++
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~p--~~D~v~~~~~lh~~~ 260 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDM---FT-SIP--NADAVLLKYILHNWT 260 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCT---TT-CCC--CCSEEEEESCGGGSC
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccc---cC-CCC--CccEEEeehhhccCC
Confidence 3689999999999543 34457789999999 999999886 488999998 44 444 399999999999999
Q ss_pred CHH--HHHHHHHhhccc---CcEEEEEecC---cc------hhHHHhhhh--hcCCCCchhHhHHHHHHHhCCCCCCcee
Q 021661 223 KPI--EVFKEMCQVLKP---GGLAIVSFSN---RC------FWTKAISIW--TSTGDADHVMIVGAYFHYAGGYEPPQAV 286 (309)
Q Consensus 223 d~~--~~l~~i~rvLkp---GG~lii~~~~---~~------~~~~~~~~w--~~~~~~~h~~~~~~~f~~~~Gf~~~~~~ 286 (309)
++. ++|++++++||| ||.++|.... .. .....++.+ ...+......-+.+.+ +++||+.+++.
T Consensus 261 d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~t~~e~~~ll-~~aGf~~~~~~ 339 (352)
T 1fp2_A 261 DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLF-IEAGFQHYKIS 339 (352)
T ss_dssp HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHH-HHTTCCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHhccCCCCCHHHHHHHH-HHCCCCeeEEE
Confidence 887 999999999999 9987765332 11 111112211 1112112233344455 56999987776
Q ss_pred eccCCCCCCCCcEEEEEEe
Q 021661 287 DISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 287 ~~~~~~~~~~p~~~v~a~k 305 (309)
.. + ....+|.++|
T Consensus 340 ~~-~-----~~~~vie~~~ 352 (352)
T 1fp2_A 340 PL-T-----GFLSLIEIYP 352 (352)
T ss_dssp EE-E-----TTEEEEEEEC
T ss_pred ec-C-----CCcEEEEEeC
Confidence 63 1 2345666654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=121.04 Aligned_cols=99 Identities=15% Similarity=0.187 Sum_probs=75.5
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCC--------------CCCcEEEecCCCCCC-CC--CCCC
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNP--------------VLTEYVVQDLNLNPK-LP--FEDN 207 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~--------------~~i~~~~~D~~~~~~-lp--~~~~ 207 (309)
++.+|||||||+|..+ ....+...|+|+|+|+.|++.|+ .+++++++|+ .. ++ ++++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~---~~~l~~~~~~~ 122 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNA---MKHLPNFFYKG 122 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCT---TTCHHHHCCTT
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcH---HHhhhhhCCCc
Confidence 4679999999999543 34457789999999999997543 2488999999 65 66 7788
Q ss_pred ceeEEEeccchhccCC--------HHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 208 SFDVITNVVSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 208 sfDlVis~~vl~~l~d--------~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
+||.|++.+.-.|... ...+++++.++|||||.+++.+.+..
T Consensus 123 ~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~ 172 (235)
T 3ckk_A 123 QLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLE 172 (235)
T ss_dssp CEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred CeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHH
Confidence 9999998654433211 14799999999999999999877643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.1e-14 Score=124.29 Aligned_cols=102 Identities=9% Similarity=0.096 Sum_probs=78.8
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCC-C--CCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL-P--FEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~l-p--~~~~sfDlVi 213 (309)
++.+|||||||+|... ....+...|+|+|+|+.|++.|++ +++++++|+ .++ + +++++||.|+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da---~~~l~~~~~~~~~d~v~ 110 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDA---VEVLHKMIPDNSLRMVQ 110 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCH---HHHHHHHSCTTCEEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCH---HHHHHHHcCCCChheEE
Confidence 3679999999999543 334677899999999999987653 478999998 553 3 6788999999
Q ss_pred eccchhccCCH--------HHHHHHHHhhcccCcEEEEEecCcchhH
Q 021661 214 NVVSVDYLTKP--------IEVFKEMCQVLKPGGLAIVSFSNRCFWT 252 (309)
Q Consensus 214 s~~vl~~l~d~--------~~~l~~i~rvLkpGG~lii~~~~~~~~~ 252 (309)
+++...|.... ..+++++.++|||||.+++.+.+.....
T Consensus 111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~ 157 (218)
T 3dxy_A 111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAE 157 (218)
T ss_dssp EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHH
T ss_pred EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHH
Confidence 98654443221 2699999999999999999887654433
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=117.11 Aligned_cols=130 Identities=9% Similarity=0.076 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCC
Q 021661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNL 198 (309)
Q Consensus 129 ~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~ 198 (309)
.....+.+.+...++ ++.+|||+|||+|.... ...+..+|+|+|+|+.|++.++++ ++++++|+
T Consensus 45 ~~~~~~~~~l~~~~~----~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~-- 118 (205)
T 3grz_A 45 QTTQLAMLGIERAMV----KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSL-- 118 (205)
T ss_dssp HHHHHHHHHHHHHCS----SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESST--
T ss_pred ccHHHHHHHHHHhcc----CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccc--
Confidence 334455566665554 37899999999985432 223456999999999999987653 78999998
Q ss_pred CCCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhC
Q 021661 199 NPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAG 278 (309)
Q Consensus 199 ~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~ 278 (309)
.+. .+++||+|+++.+++++ ..+++++.++|||||.+++...... ....+.+.+ ...
T Consensus 119 -~~~--~~~~fD~i~~~~~~~~~---~~~l~~~~~~L~~gG~l~~~~~~~~----------------~~~~~~~~~-~~~ 175 (205)
T 3grz_A 119 -LAD--VDGKFDLIVANILAEIL---LDLIPQLDSHLNEDGQVIFSGIDYL----------------QLPKIEQAL-AEN 175 (205)
T ss_dssp -TTT--CCSCEEEEEEESCHHHH---HHHGGGSGGGEEEEEEEEEEEEEGG----------------GHHHHHHHH-HHT
T ss_pred -ccc--CCCCceEEEECCcHHHH---HHHHHHHHHhcCCCCEEEEEecCcc----------------cHHHHHHHH-HHc
Confidence 443 35789999999988764 7899999999999999988643221 123334445 347
Q ss_pred CCCCCceee
Q 021661 279 GYEPPQAVD 287 (309)
Q Consensus 279 Gf~~~~~~~ 287 (309)
||+..++..
T Consensus 176 Gf~~~~~~~ 184 (205)
T 3grz_A 176 SFQIDLKMR 184 (205)
T ss_dssp TEEEEEEEE
T ss_pred CCceEEeec
Confidence 888766554
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.43 E-value=7.8e-13 Score=118.76 Aligned_cols=137 Identities=16% Similarity=0.208 Sum_probs=98.5
Q ss_pred CCCCeEEEECCCcchhc---cC-CCCCCeEEEEeCCHHHHhhCCC-----------CCcEEEecCCCCCCCCCCCCceeE
Q 021661 147 TPGVSILDLCSSWVSHF---PP-GYKQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNPKLPFEDNSFDV 211 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~-~~~~~~v~giD~S~~~l~~a~~-----------~i~~~~~D~~~~~~lp~~~~sfDl 211 (309)
.++.+|||+|||+|... .. ..+..+|+++|+|+.+++.+++ +++++++|+ .+.++++++||+
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~---~~~~~~~~~~D~ 174 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL---ADSELPDGSVDR 174 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG---GGCCCCTTCEEE
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch---HhcCCCCCceeE
Confidence 45789999999988543 22 2357899999999999876543 467889998 666777788999
Q ss_pred EEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCC
Q 021661 212 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPN 291 (309)
Q Consensus 212 Vis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~ 291 (309)
|++ +++++..+++++.++|||||.+++.+++.....+ +...+....||..+++......
T Consensus 175 v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~----------------~~~~l~~~~~f~~~~~~~~~~~ 233 (280)
T 1i9g_A 175 AVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSR----------------IVEALRAKQCWTEPRAWETLQR 233 (280)
T ss_dssp EEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHH----------------HHHHHHHHSSBCCCEEECCCCC
T ss_pred EEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHH----------------HHHHHHhcCCcCCcEEEEEeee
Confidence 998 4568889999999999999999998775322211 1222333367877776665433
Q ss_pred C-------------CCCCCcEEEEEEeCC
Q 021661 292 P-------------GRSDPMYVVYSRKAS 307 (309)
Q Consensus 292 ~-------------~~~~p~~~v~a~k~~ 307 (309)
. +...+.|++.+||..
T Consensus 234 ~~~~~~~~~~p~~~~~~~~~~lv~~rk~~ 262 (280)
T 1i9g_A 234 GWNVVGLAVRPQHSMRGHTAFLVATRRLA 262 (280)
T ss_dssp CEEEETTEEEECSCCCCCSCEEEEEEBCC
T ss_pred EeEeccceeCCCCcccCccEEEEEEEecC
Confidence 2 123466999999974
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.6e-14 Score=124.00 Aligned_cols=138 Identities=12% Similarity=0.158 Sum_probs=98.6
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
.++.+|||+|||+|... ... .+..+|+++|+|+.+++.+++ ++++.++|+ .+.++++++||+|+
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~---~~~~~~~~~~D~v~ 171 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKL---EEAELEEAAYDGVA 171 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCG---GGCCCCTTCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECch---hhcCCCCCCcCEEE
Confidence 45789999999988543 222 457899999999999987653 478899998 66667778899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCC--
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPN-- 291 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~-- 291 (309)
+ +.+++..+++++.++|||||.+++..+...... -..+.+ ...||..+++......
T Consensus 172 ~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~----------------~~~~~l-~~~gf~~~~~~~~~~~~~ 229 (258)
T 2pwy_A 172 L-----DLMEPWKVLEKAALALKPDRFLVAYLPNITQVL----------------ELVRAA-EAHPFRLERVLEVGWREW 229 (258)
T ss_dssp E-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHHHHH----------------HHHHHH-TTTTEEEEEEEEEEEEEE
T ss_pred E-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHHHHH----------------HHHHHH-HHCCCceEEEEEeeeeEe
Confidence 8 467888999999999999999988776532211 112223 2367776665553111
Q ss_pred -----------CCCCCCcEEEEEEeCCCC
Q 021661 292 -----------PGRSDPMYVVYSRKASTA 309 (309)
Q Consensus 292 -----------~~~~~p~~~v~a~k~~~~ 309 (309)
.....+.|++.|||...+
T Consensus 230 ~~~~~~~rp~~~~~~~~~~l~~ark~~~s 258 (258)
T 2pwy_A 230 EVRLPVAHPRFQQVGHTAFLVALRRWKGS 258 (258)
T ss_dssp EEETTEEEECSSCCCCCCEEEEEEECCCC
T ss_pred eeccCccCCCCccCCcceEEEEEEecCCC
Confidence 112347799999998653
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-13 Score=120.18 Aligned_cols=138 Identities=11% Similarity=0.021 Sum_probs=97.3
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCC---CCceeEE
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE---DNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~---~~sfDlV 212 (309)
.++.+|||||||+|.. +....+..+|+++|+|+.|++.+++ +++++++|+ ++++.. +++||+|
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~---~~~~~~~~~~~~fD~I 155 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRA---EVLAREAGHREAYARA 155 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCH---HHHTTSTTTTTCEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcH---HHhhcccccCCCceEE
Confidence 4578999999998843 3344578899999999999998765 378999999 666542 4789999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP 292 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~ 292 (309)
++.. +.+...+++.+.++|||||.+++...... . +.+......+ ...||...++..+.. +
T Consensus 156 ~s~a----~~~~~~ll~~~~~~LkpgG~l~~~~g~~~-~-------------~e~~~~~~~l-~~~G~~~~~~~~~~~-p 215 (249)
T 3g89_A 156 VARA----VAPLCVLSELLLPFLEVGGAAVAMKGPRV-E-------------EELAPLPPAL-ERLGGRLGEVLALQL-P 215 (249)
T ss_dssp EEES----SCCHHHHHHHHGGGEEEEEEEEEEECSCC-H-------------HHHTTHHHHH-HHHTEEEEEEEEEEC-T
T ss_pred EECC----cCCHHHHHHHHHHHcCCCeEEEEEeCCCc-H-------------HHHHHHHHHH-HHcCCeEEEEEEeeC-C
Confidence 9964 45778999999999999998876443211 1 1122223333 236788777777633 3
Q ss_pred CCCCCcEEEEEEeCC
Q 021661 293 GRSDPMYVVYSRKAS 307 (309)
Q Consensus 293 ~~~~p~~~v~a~k~~ 307 (309)
+.....++++.+|..
T Consensus 216 ~~~~~R~l~~~~k~~ 230 (249)
T 3g89_A 216 LSGEARHLVVLEKTA 230 (249)
T ss_dssp TTCCEEEEEEEEECS
T ss_pred CCCCcEEEEEEEeCC
Confidence 444566777777753
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=118.08 Aligned_cols=130 Identities=14% Similarity=0.172 Sum_probs=91.0
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK 201 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~ 201 (309)
.+.+.+.+.++ .++.+|||+|||+|... ....+..+|+|+|+|+.+++.++++ ++++++|+ ..
T Consensus 97 ~l~~~~l~~~~---~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~---~~ 170 (276)
T 2b3t_A 97 CLVEQALARLP---EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDW---FS 170 (276)
T ss_dssp HHHHHHHHHSC---SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCST---TG
T ss_pred HHHHHHHHhcc---cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcch---hh
Confidence 34444445543 24679999999998532 3335678999999999999987653 78889998 44
Q ss_pred CCCCCCceeEEEecc-------------chhccC------------CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhh
Q 021661 202 LPFEDNSFDVITNVV-------------SVDYLT------------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAIS 256 (309)
Q Consensus 202 lp~~~~sfDlVis~~-------------vl~~l~------------d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~ 256 (309)
++++++||+|+++. +++|-+ +...+++++.++|||||.++++....
T Consensus 171 -~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------- 241 (276)
T 2b3t_A 171 -ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-------- 241 (276)
T ss_dssp -GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS--------
T ss_pred -hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch--------
Confidence 23467899999983 444332 35789999999999999999874321
Q ss_pred hhhcCCCCchhHhHHHHHHHhCCCCCCceee
Q 021661 257 IWTSTGDADHVMIVGAYFHYAGGYEPPQAVD 287 (309)
Q Consensus 257 ~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~ 287 (309)
....+.+.+. ..||..+++..
T Consensus 242 ---------~~~~~~~~l~-~~Gf~~v~~~~ 262 (276)
T 2b3t_A 242 ---------QGEAVRQAFI-LAGYHDVETCR 262 (276)
T ss_dssp ---------CHHHHHHHHH-HTTCTTCCEEE
T ss_pred ---------HHHHHHHHHH-HCCCcEEEEEe
Confidence 1233445554 47998776654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-14 Score=121.44 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=72.3
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCC-CCceeEEEeccchhccC
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFE-DNSFDVITNVVSVDYLT 222 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~-~~sfDlVis~~vl~~l~ 222 (309)
++.+|||||||+|.... .+..+.+|+|+|+|+.|++.++++ ++++++|+. +.+|++ +++||+|+++ .
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~--~~~~~~~~~~fD~v~~~------~ 119 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGK--GELPAGLGAPFGLIVSR------R 119 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSC--SSCCTTCCCCEEEEEEE------S
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchh--hccCCcCCCCEEEEEeC------C
Confidence 37899999999995432 122267999999999999988764 899999984 357777 8899999997 4
Q ss_pred CHHHHHHHHHhhcccCcEEE
Q 021661 223 KPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 223 d~~~~l~~i~rvLkpGG~li 242 (309)
++..+++++.++|||||.++
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 120 GPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp CCSGGGGGHHHHEEEEEEEE
T ss_pred CHHHHHHHHHHHcCCCcEEE
Confidence 77899999999999999888
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.3e-14 Score=124.11 Aligned_cols=156 Identities=15% Similarity=0.088 Sum_probs=84.3
Q ss_pred CCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCCC-cEEEe---cCCCCCCCCCCCCceeEEEeccchhc
Q 021661 147 TPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVLT-EYVVQ---DLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~i-~~~~~---D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
.++.+|||||||+|.... ......+|+|+|+|+.|++.++++. ..... ++.....-.++...||.+.+..++.+
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~ 115 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFIS 115 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSC
T ss_pred CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhh
Confidence 346799999999995432 1222349999999999998765431 11111 11000000011112344444444433
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCC----CCchhHhHHHHH--HHhCCCCCCceeeccCCCCC
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTG----DADHVMIVGAYF--HYAGGYEPPQAVDISPNPGR 294 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~----~~~h~~~~~~~f--~~~~Gf~~~~~~~~~~~~~~ 294 (309)
+ ..+|++++|+|||||.+++.+ .+.+ ..........+ ...|.....++. -.++||+...+....-....
T Consensus 116 l---~~~l~~i~rvLkpgG~lv~~~-~p~~-e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g~~ 190 (232)
T 3opn_A 116 L---DLILPPLYEILEKNGEVAALI-KPQF-EAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGA 190 (232)
T ss_dssp G---GGTHHHHHHHSCTTCEEEEEE-CHHH-HSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCBTT
T ss_pred H---HHHHHHHHHhccCCCEEEEEE-Cccc-ccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCCCC
Confidence 3 789999999999999888765 2222 11111111111 111222222221 25689996655443333344
Q ss_pred CCCcEEEEEEeCC
Q 021661 295 SDPMYVVYSRKAS 307 (309)
Q Consensus 295 ~~p~~~v~a~k~~ 307 (309)
.+.-|.++++|..
T Consensus 191 gn~e~l~~~~~~~ 203 (232)
T 3opn_A 191 GNVEFLVHLLKDG 203 (232)
T ss_dssp TBCCEEEEEEESS
T ss_pred CCHHHHHHHhhcc
Confidence 5677999999853
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=120.38 Aligned_cols=94 Identities=14% Similarity=0.119 Sum_probs=68.8
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCC-HHHHhhC---CC--------CCcEEEecCCCCCCCCCC-CCceeE
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMN-EEELKRN---PV--------LTEYVVQDLNLNPKLPFE-DNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S-~~~l~~a---~~--------~i~~~~~D~~~~~~lp~~-~~sfDl 211 (309)
++.+|||||||+|... ....++.+|+|+|+| +.|++.| ++ ++.++++|+ +.+|.. .+.+|.
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~---~~l~~~~~d~v~~ 100 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAA---ESLPFELKNIADS 100 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBT---TBCCGGGTTCEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCH---HHhhhhccCeEEE
Confidence 4789999999999543 223677899999999 7787766 43 378999999 777632 245666
Q ss_pred EEeccchhc-----cCCHHHHHHHHHhhcccCcEEEEE
Q 021661 212 ITNVVSVDY-----LTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 212 Vis~~vl~~-----l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
|.+++...+ ..++..+|++++|+|||||.+++.
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 666543221 234568999999999999988873
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-14 Score=120.05 Aligned_cols=148 Identities=9% Similarity=-0.022 Sum_probs=84.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKL 202 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~l 202 (309)
.+.+.+.+.+.. ..++.+|||+|||+|... ....+..+|+|+|+|+.|++.++++ ++++++|+ .+
T Consensus 16 ~~~~~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~- 90 (215)
T 4dzr_A 16 VLVEEAIRFLKR-MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADG---IE- 90 (215)
T ss_dssp HHHHHHHHHHTT-CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHH---HH-
T ss_pred HHHHHHHHHhhh-cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcch---Hh-
Confidence 344444444432 134789999999999543 3334567999999999999998875 56777777 44
Q ss_pred CCCC-----CceeEEEeccchhccCC--------------------------HHHHHHHHHhhcccCcE-EEEEecCcch
Q 021661 203 PFED-----NSFDVITNVVSVDYLTK--------------------------PIEVFKEMCQVLKPGGL-AIVSFSNRCF 250 (309)
Q Consensus 203 p~~~-----~sfDlVis~~vl~~l~d--------------------------~~~~l~~i~rvLkpGG~-lii~~~~~~~ 250 (309)
++++ ++||+|+++..+.+..+ ...+++++.++|||||. ++++++..
T Consensus 91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-- 168 (215)
T 4dzr_A 91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHN-- 168 (215)
T ss_dssp HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTTS--
T ss_pred hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECCc--
Confidence 4444 88999999644332211 17889999999999998 67765421
Q ss_pred hHHHhhhhhcCCCCchhHhHHHHHHH-hCCCCCCceeeccCCCCCCCCcEEEEEEeCC
Q 021661 251 WTKAISIWTSTGDADHVMIVGAYFHY-AGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 251 ~~~~~~~w~~~~~~~h~~~~~~~f~~-~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
....+.+.+.. ..||..+++..-.. ....+++++|..
T Consensus 169 ---------------~~~~~~~~l~~~~~gf~~~~~~~~~~-----~~~r~~~~~~~~ 206 (215)
T 4dzr_A 169 ---------------QADEVARLFAPWRERGFRVRKVKDLR-----GIDRVIAVTREP 206 (215)
T ss_dssp ---------------CHHHHHHHTGGGGGGTEECCEEECTT-----SCEEEEEEEECC
T ss_pred ---------------cHHHHHHHHHHhhcCCceEEEEEecC-----CCEEEEEEEEcC
Confidence 11223333431 47787766655332 124566666653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=118.04 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=75.2
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|..... +..+.+|+|+|+|+.+++.+++ +++++++|+ ...+.++++||+|++..+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDG---WQGWQARAPFDAIIVTAA 152 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEEESSB
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCc---ccCCccCCCccEEEEccc
Confidence 4588999999998854321 1126799999999999987765 378999998 555555788999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++|+.+ ++.++|||||.+++.+++
T Consensus 153 ~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred hhhhhH------HHHHhcccCcEEEEEEcC
Confidence 999986 689999999999999876
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.2e-13 Score=122.83 Aligned_cols=104 Identities=12% Similarity=0.033 Sum_probs=78.9
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK 201 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~ 201 (309)
.+.+.+.+.+. ..++.+|||||||+|..... .....+|+|+|+|+ |++.|++ +++++++|+ .+
T Consensus 51 ~~~~~i~~~~~--~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~---~~ 124 (340)
T 2fyt_A 51 SYRDFIYQNPH--IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKI---EE 124 (340)
T ss_dssp HHHHHHHHCGG--GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---TT
T ss_pred HHHHHHHhhhh--hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeH---HH
Confidence 34444444432 24478999999999954321 12345999999996 8887654 378999999 78
Q ss_pred CCCCCCceeEEEecc---chhccCCHHHHHHHHHhhcccCcEEE
Q 021661 202 LPFEDNSFDVITNVV---SVDYLTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 202 lp~~~~sfDlVis~~---vl~~l~d~~~~l~~i~rvLkpGG~li 242 (309)
+++++++||+|++.. .+.+..++..++.++.++|||||.++
T Consensus 125 ~~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 125 VHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hcCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 888888999999876 46666678899999999999999887
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.2e-13 Score=116.38 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=74.3
Q ss_pred CCCCeEEEECCC-cchhccCC-CC-CCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCC-CCCCCceeEEEec
Q 021661 147 TPGVSILDLCSS-WVSHFPPG-YK-QDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKL-PFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~~~~-~~-~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~l-p~~~~sfDlVis~ 215 (309)
.++.+|||+||| +|...... .. ..+|+|+|+|+.|++.++++ ++++++|+ ..+ ++++++||+|+++
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~---~~~~~~~~~~fD~I~~n 130 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG---GIIKGVVEGTFDVIFSA 130 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS---CSSTTTCCSCEEEEEEC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc---hhhhhcccCceeEEEEC
Confidence 348899999999 99543221 11 67999999999999987653 78999997 322 3456889999998
Q ss_pred cchhccCC-------------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 216 VSVDYLTK-------------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 216 ~vl~~l~d-------------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
..+.+..+ ...+++++.++|||||.+++.++.
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 66655432 478999999999999999887664
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=116.84 Aligned_cols=139 Identities=14% Similarity=0.080 Sum_probs=96.5
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC------------CcEEEecCCCCCCC-------CC
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKL-------PF 204 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~------------i~~~~~D~~~~~~l-------p~ 204 (309)
.++.+|||+|||+|.. +....+..+|+|+|+++.|++.|+++ ++++++|+ .++ ++
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~---~~~~~~~~~~~~ 111 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADV---TLRAKARVEAGL 111 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCT---TCCHHHHHHTTC
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCH---HHHhhhhhhhcc
Confidence 4578999999999954 23334567999999999999876432 67899999 555 25
Q ss_pred CCCceeEEEeccchhcc------------------CCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCch
Q 021661 205 EDNSFDVITNVVSVDYL------------------TKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADH 266 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l------------------~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h 266 (309)
++++||+|+++..+... .+...+++++.++|||||.+++..+...
T Consensus 112 ~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------- 174 (260)
T 2ozv_A 112 PDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQS----------------- 174 (260)
T ss_dssp CTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGG-----------------
T ss_pred CCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHH-----------------
Confidence 57889999998322211 2478899999999999999988654321
Q ss_pred hHhHHHHHHHhCCCCCCceeeccCCCCCCCCcEEEEEEeCC
Q 021661 267 VMIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 267 ~~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
..-+.+.+.. .|...++..+.+..+.....++|.++|.+
T Consensus 175 ~~~~~~~l~~--~~~~~~i~~v~~~~~~~~~~~lv~~~k~~ 213 (260)
T 2ozv_A 175 VAEIIAACGS--RFGGLEITLIHPRPGEDAVRMLVTAIKGS 213 (260)
T ss_dssp HHHHHHHHTT--TEEEEEEEEEESSTTSCCCEEEEEEEETC
T ss_pred HHHHHHHHHh--cCCceEEEEEcCCCCCCceEEEEEEEeCC
Confidence 1112223322 37777777776666666666788888854
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-13 Score=115.93 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=73.9
Q ss_pred CCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCC-CCCC-----CCce
Q 021661 149 GVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPK-LPFE-----DNSF 209 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~-lp~~-----~~sf 209 (309)
+.+|||||||+|.. +... .++.+|+++|+|+.|++.|+++ ++++++|+ .+ ++.. .++|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS---QDLIPQLKKKYDVDTL 135 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH---HHHGGGTTTTSCCCCC
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH---HHHHHHHHHhcCCCce
Confidence 67999999998843 2333 2478999999999999987762 78999997 33 3321 2689
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|+|++....++..+..++++.+ ++|||||.++++..
T Consensus 136 D~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 136 DMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp SEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCC
Confidence 9999998888877777888888 99999999988644
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-13 Score=128.60 Aligned_cols=94 Identities=16% Similarity=0.040 Sum_probs=74.9
Q ss_pred CCCCeEEEECCCcchhccC---CCCCCeEEEEeCCHHHHhhCCC-----------------CCcEEEecCCCCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPP---GYKQDRIVGMGMNEEELKRNPV-----------------LTEYVVQDLNLNPKLPFED 206 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~---~~~~~~v~giD~S~~~l~~a~~-----------------~i~~~~~D~~~~~~lp~~~ 206 (309)
.++.+|||||||+|..... ..+..+|+|||+|+.|++.|++ +++++++|+ .++|+.+
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~---~~lp~~d 248 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF---LSEEWRE 248 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT---TSHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc---cCCcccc
Confidence 5688999999999954422 2334469999999988876643 478999999 7777654
Q ss_pred --CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 207 --NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 207 --~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..||+|+++..+ +.++..+.|.+++++|||||.|++.
T Consensus 249 ~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 249 RIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp HHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred ccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEe
Confidence 469999998766 4568889999999999999988875
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-13 Score=114.40 Aligned_cols=90 Identities=9% Similarity=0.019 Sum_probs=73.0
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+|||+|||+|.. +....+..+|+|+|+|+.+++.+++ +++++++|+ ..++ ++++||+|++..
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~-~~~~~D~i~~~~- 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV---EEFP-SEPPFDGVISRA- 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT---TTSC-CCSCEEEEECSC-
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecch---hhCC-ccCCcCEEEEec-
Confidence 67999999998854 2333467899999999999987764 278899999 6655 457899999864
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+.++..+++++.++|||||.+++...
T Consensus 141 ---~~~~~~~l~~~~~~L~~gG~l~~~~~ 166 (207)
T 1jsx_A 141 ---FASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---SSSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---cCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 35788999999999999999988744
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.2e-13 Score=110.17 Aligned_cols=92 Identities=2% Similarity=-0.091 Sum_probs=74.8
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||+|||+|... ..+.+..+|+|+|+|+.|++.+++ +++++++|+ .+ ++++++||+|++..+
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~---~~-~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRA---ED-VLDKLEFNKAFIGGT 109 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCH---HH-HGGGCCCSEEEECSC
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCc---cc-cccCCCCcEEEECCc
Confidence 45789999999999542 222267899999999999987764 378899998 55 556678999999988
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.++..+++++.++ |||.+++..++.
T Consensus 110 ----~~~~~~l~~~~~~--~gG~l~~~~~~~ 134 (183)
T 2yxd_A 110 ----KNIEKIIEILDKK--KINHIVANTIVL 134 (183)
T ss_dssp ----SCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred ----ccHHHHHHHHhhC--CCCEEEEEeccc
Confidence 6889999999999 999999987654
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=110.90 Aligned_cols=95 Identities=19% Similarity=0.200 Sum_probs=71.0
Q ss_pred CCCCeEEEECCCcchhc---cCCCC--CCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC------------------
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYK--QDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP------------------ 203 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~--~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp------------------ 203 (309)
.++.+|||||||+|... ....+ ..+|+|+|+|+.+ ...+++++++|+ .+.+
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---~~~~v~~~~~d~---~~~~~~~~~~~~~i~~~~~~~~ 94 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---PIPNVYFIQGEI---GKDNMNNIKNINYIDNMNNNSV 94 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---CCTTCEEEECCT---TTTSSCCC-----------CHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---CCCCceEEEccc---cchhhhhhccccccccccchhh
Confidence 34789999999998532 23334 5799999999832 223589999999 5555
Q ss_pred -------CCCCceeEEEeccchhccC----CH-------HHHHHHHHhhcccCcEEEEEecC
Q 021661 204 -------FEDNSFDVITNVVSVDYLT----KP-------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 204 -------~~~~sfDlVis~~vl~~l~----d~-------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+++++||+|++..++++.. +. .++++++.++|||||.+++.+..
T Consensus 95 ~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 156 (201)
T 2plw_A 95 DYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL 156 (201)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence 4567899999988777642 22 24899999999999999887543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-13 Score=118.16 Aligned_cols=97 Identities=13% Similarity=0.056 Sum_probs=74.7
Q ss_pred CCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCC----------CCcEEEecCCCCCCC-C-CCCCc-eeEEE
Q 021661 149 GVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKL-P-FEDNS-FDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~----------~i~~~~~D~~~~~~l-p-~~~~s-fDlVi 213 (309)
+.+|||+|||+|.... ......+|+|+|+|+.|++.|++ +++++++|+ .++ + +.+++ ||+|+
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~fD~I~ 130 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSS---LDFLKQPQNQPHFDVVF 130 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCH---HHHTTSCCSSCCEEEEE
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCH---HHHHHhhccCCCCCEEE
Confidence 6799999999996432 22233589999999999997764 467888887 443 2 23578 99999
Q ss_pred eccchhccCCHHHHHHHH--HhhcccCcEEEEEecCcc
Q 021661 214 NVVSVDYLTKPIEVFKEM--CQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i--~rvLkpGG~lii~~~~~~ 249 (309)
+...++ ..+...+++.+ .++|||||.++++.....
T Consensus 131 ~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 131 LDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp ECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred ECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 988754 56678899999 678999999999876543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-13 Score=115.18 Aligned_cols=98 Identities=17% Similarity=0.062 Sum_probs=75.9
Q ss_pred CCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCC----CCCCCceeEE
Q 021661 148 PGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL----PFEDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~l----p~~~~sfDlV 212 (309)
++.+|||+|||+|.... ...+..+|+|+|+|+.|++.+++ +++++++|+ .+. +.++++||+|
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA---NRALEQFYEEKLQFDLV 120 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH---HHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcH---HHHHHHHHhcCCCCCEE
Confidence 47899999999996432 22345699999999999998765 368899998 442 2236789999
Q ss_pred EeccchhccCCHHHHHHHH--HhhcccCcEEEEEecCcc
Q 021661 213 TNVVSVDYLTKPIEVFKEM--CQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i--~rvLkpGG~lii~~~~~~ 249 (309)
+++..++ ..+....++.+ .++|||||.++++.+...
T Consensus 121 ~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 121 LLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp EECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred EECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 9988744 45678888888 899999999999877643
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=122.90 Aligned_cols=106 Identities=13% Similarity=0.158 Sum_probs=79.1
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-----------CcEEEecCCCCCC
Q 021661 136 KYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNPK 201 (309)
Q Consensus 136 ~~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-----------i~~~~~D~~~~~~ 201 (309)
+.+.+.++. .++.+|||+|||+|.. +....|+.+|+|+|+|+.|++.++++ ++++++|+ ..
T Consensus 212 ~~ll~~l~~--~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~---~~ 286 (375)
T 4dcm_A 212 RFFMQHLPE--NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNA---LS 286 (375)
T ss_dssp HHHHHTCCC--SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECST---TT
T ss_pred HHHHHhCcc--cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechh---hc
Confidence 344555653 3458999999999954 33445678999999999999987753 56699998 44
Q ss_pred CCCCCCceeEEEeccchhccC---C--HHHHHHHHHhhcccCcEEEEEecC
Q 021661 202 LPFEDNSFDVITNVVSVDYLT---K--PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 202 lp~~~~sfDlVis~~vl~~l~---d--~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++++++||+|+++..+++.. + ..++++++.++|||||.+++....
T Consensus 287 -~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 287 -GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR 336 (375)
T ss_dssp -TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred -cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence 45678899999998888642 2 247899999999999999887654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=119.98 Aligned_cols=143 Identities=10% Similarity=0.027 Sum_probs=97.9
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
..+|||||||+|.. +....+..+++++|+ +.|++.+++ +++++++|+ .. +++ +||+|++..++||+++
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~---~~-~~~--~~D~v~~~~vlh~~~d 266 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVGGDM---FK-SIP--SADAVLLKWVLHDWND 266 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEECCT---TT-CCC--CCSEEEEESCGGGSCH
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEeCcc---CC-CCC--CceEEEEcccccCCCH
Confidence 57999999999954 344467789999999 799998875 488999998 44 554 4999999999999998
Q ss_pred HH--HHHHHHHhhccc---CcEEEEEec---Ccc------hhHHHhhh--hh-cCCCCchhHhHHHHHHHhCCCCCCcee
Q 021661 224 PI--EVFKEMCQVLKP---GGLAIVSFS---NRC------FWTKAISI--WT-STGDADHVMIVGAYFHYAGGYEPPQAV 286 (309)
Q Consensus 224 ~~--~~l~~i~rvLkp---GG~lii~~~---~~~------~~~~~~~~--w~-~~~~~~h~~~~~~~f~~~~Gf~~~~~~ 286 (309)
+. ++|++++++||| ||.++|... ... .....++. +. ..+......-+.+.+ .++||+.+++.
T Consensus 267 ~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll-~~aGf~~~~~~ 345 (358)
T 1zg3_A 267 EQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLI-YDAGFSSYKIT 345 (358)
T ss_dssp HHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHH-HHTTCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHH-HHcCCCeeEEE
Confidence 77 999999999999 997766432 111 11111111 11 112222333444455 45999987776
Q ss_pred eccCCCCCCCCcEEEEEEe
Q 021661 287 DISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 287 ~~~~~~~~~~p~~~v~a~k 305 (309)
.. + ....+|.++|
T Consensus 346 ~~-~-----~~~~vie~~~ 358 (358)
T 1zg3_A 346 PI-S-----GFKSLIEVYP 358 (358)
T ss_dssp EE-T-----TTEEEEEEEC
T ss_pred ec-C-----CCcEEEEEeC
Confidence 62 2 2345666554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.6e-12 Score=115.59 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=95.3
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
.++.+|||+|||+|... ... .+..+|+++|+|+.+++.+++ +++++++|+ .+. +++++||+|+
T Consensus 111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~-~~~~~~D~V~ 186 (277)
T 1o54_A 111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI---SEG-FDEKDVDALF 186 (277)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG---GGC-CSCCSEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH---HHc-ccCCccCEEE
Confidence 45789999999988532 222 457899999999999987764 367888888 444 5567899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC-
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP- 292 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~- 292 (309)
+ +.+++..+++++.++|||||.+++..+..... ..+.+.+. ..||..+++.......
T Consensus 187 ~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~----------------~~~~~~l~-~~gf~~~~~~~~~~~~~ 244 (277)
T 1o54_A 187 L-----DVPDPWNYIDKCWEALKGGGRFATVCPTTNQV----------------QETLKKLQ-ELPFIRIEVWESLFRPY 244 (277)
T ss_dssp E-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHHHH----------------HHHHHHHH-HSSEEEEEEECCCCCCE
T ss_pred E-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHHH----------------HHHHHHHH-HCCCceeEEEEEeeeee
Confidence 8 35688899999999999999999887642211 11222333 3677766555543221
Q ss_pred ------------CCCCCcEEEEEEeCCC
Q 021661 293 ------------GRSDPMYVVYSRKAST 308 (309)
Q Consensus 293 ------------~~~~p~~~v~a~k~~~ 308 (309)
....+-|++.|||...
T Consensus 245 ~~~~~~~rp~~~~~~~~~~li~ark~~~ 272 (277)
T 1o54_A 245 KPVPERLRPVDRMVAHTAYMIFATKVCR 272 (277)
T ss_dssp ECCTTSCEECSCCCCCSCEEEEEEECSC
T ss_pred EeccceeCCCccccCCCeEEEEEEecCC
Confidence 1123569999999753
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.2e-13 Score=118.86 Aligned_cols=96 Identities=9% Similarity=0.042 Sum_probs=74.2
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||+|||+|...... ....+|+++|+|+.+++.+++ ++++.++|+ .+...++++||+|++
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~D~v~~-- 164 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDF---KDAEVPEGIFHAAFV-- 164 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCT---TTSCCCTTCBSEEEE--
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcCh---hhcccCCCcccEEEE--
Confidence 45789999999988532211 116799999999999987764 367888888 554325678999998
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
+.+++..+++++.++|||||.+++..++...
T Consensus 165 ---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 195 (248)
T 2yvl_A 165 ---DVREPWHYLEKVHKSLMEGAPVGFLLPTANQ 195 (248)
T ss_dssp ---CSSCGGGGHHHHHHHBCTTCEEEEEESSHHH
T ss_pred ---CCcCHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence 3557889999999999999999998876433
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.35 E-value=3.3e-13 Score=116.13 Aligned_cols=96 Identities=9% Similarity=-0.084 Sum_probs=74.9
Q ss_pred CCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCC-CCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPK-LPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~-lp~~~~sfDlVis~~v 217 (309)
+.+|||+|||+|.... ......+|+|+|+|+.|++.+++ +++++++|+ .+ ++..+++||+|++...
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~---~~~~~~~~~~fD~V~~~~p 131 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA---MSFLAQKGTPHNIVFVDPP 131 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH---HHHHSSCCCCEEEEEECCS
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCH---HHHHhhcCCCCCEEEECCC
Confidence 6799999999996433 22223599999999999998765 368899998 44 4555678999999877
Q ss_pred hhccCCHHHHHHHHHh--hcccCcEEEEEecCc
Q 021661 218 VDYLTKPIEVFKEMCQ--VLKPGGLAIVSFSNR 248 (309)
Q Consensus 218 l~~l~d~~~~l~~i~r--vLkpGG~lii~~~~~ 248 (309)
++ ..+...+++.+.+ +|||||.++++....
T Consensus 132 ~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 132 FR-RGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp SS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CC-CCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 44 5677889999976 599999999987653
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=111.72 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=90.1
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCC------CCCcEEEecCCCCCCC---CCCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNP------VLTEYVVQDLNLNPKL---PFEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~------~~i~~~~~D~~~~~~l---p~~~~sfDlVi 213 (309)
.++.+|||+|||+|... ... .+..+|+|+|+|+.|++.++ .+++++++|+ ... ...+++||+|+
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~D~v~ 148 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA---TKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT---TCGGGGTTTCCCEEEEE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccC---CCcchhhcccCCceEEE
Confidence 45789999999998543 222 24579999999998876542 2588999999 542 11235899999
Q ss_pred eccchhccCCH-HHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH--HhCCCCCCceeeccC
Q 021661 214 NVVSVDYLTKP-IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH--YAGGYEPPQAVDISP 290 (309)
Q Consensus 214 s~~vl~~l~d~-~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~--~~~Gf~~~~~~~~~~ 290 (309)
+... .++. ..++.++.++|||||.+++.+..... ......+ .+..+.+. ..+ |+.++.....+
T Consensus 149 ~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---------~~~~~~~-~~~~~~l~~l~~~-f~~~~~~~~~~ 214 (227)
T 1g8a_A 149 EDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSI---------DVTKEPE-QVFREVERELSEY-FEVIERLNLEP 214 (227)
T ss_dssp ECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGT---------CTTSCHH-HHHHHHHHHHHTT-SEEEEEEECTT
T ss_pred ECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCC---------CCCCChh-hhhHHHHHHHHhh-ceeeeEeccCc
Confidence 8755 2333 35599999999999998887432210 0011111 22222111 345 88877777655
Q ss_pred CCCCCCCcEEEEEEeC
Q 021661 291 NPGRSDPMYVVYSRKA 306 (309)
Q Consensus 291 ~~~~~~p~~~v~a~k~ 306 (309)
.. ...+.++++|.
T Consensus 215 ~~---~~~~~~~~~~~ 227 (227)
T 1g8a_A 215 YE---KDHALFVVRKT 227 (227)
T ss_dssp TS---SSEEEEEEECC
T ss_pred cc---CCCEEEEEEeC
Confidence 33 35688999873
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.6e-13 Score=123.47 Aligned_cols=93 Identities=13% Similarity=0.098 Sum_probs=74.8
Q ss_pred CCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||||||+|..... ..+..+|+|+|+|+ |++.|+++ ++++++|+ +++++++++||+|++..
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~Iis~~ 141 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKV---EEVELPVEKVDIIISEW 141 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCT---TTCCCSSSCEEEEEECC
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcH---HHccCCCCceEEEEEcc
Confidence 478999999999954321 22455999999994 88876642 78999999 88888889999999976
Q ss_pred c---hhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 217 S---VDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 v---l~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+ +.+..++..++.++.++|||||.++.+
T Consensus 142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 142 MGYCLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp CBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 5 444478899999999999999998754
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-12 Score=117.22 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=89.9
Q ss_pred CCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhC-CCCCcEE---EecCCCCCCCC---CCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRN-PVLTEYV---VQDLNLNPKLP---FEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a-~~~i~~~---~~D~~~~~~lp---~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|.+.. ......+|+|+|+|+.||+.+ ++.-+.. ..|+ ..++ ++..+||+|++..+
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni---~~l~~~~l~~~~fD~v~~d~s 160 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNF---RYAEPVDFTEGLPSFASIDVS 160 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCG---GGCCGGGCTTCCCSEEEECCS
T ss_pred ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCc---eecchhhCCCCCCCEEEEEee
Confidence 347899999999996542 223346999999999999873 3222222 2344 3332 33456999999888
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCC---C-chhHhHHHH--HHHhCCCCCCceeeccCC
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGD---A-DHVMIVGAY--FHYAGGYEPPQAVDISPN 291 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~---~-~h~~~~~~~--f~~~~Gf~~~~~~~~~~~ 291 (309)
++++ ..+|.+++|+|||||.+++.+ .+.|. ..-......+. . .|.....+. +...+||....+.. +|-
T Consensus 161 f~sl---~~vL~e~~rvLkpGG~lv~lv-kPqfe-~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~-spi 234 (291)
T 3hp7_A 161 FISL---NLILPALAKILVDGGQVVALV-KPQFE-AGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDF-SPI 234 (291)
T ss_dssp SSCG---GGTHHHHHHHSCTTCEEEEEE-CGGGT-SCGGGCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEE-CSS
T ss_pred HhhH---HHHHHHHHHHcCcCCEEEEEE-Ccccc-cChhhcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEE-CCC
Confidence 7754 789999999999999887753 22221 11111111111 1 122222222 22568999555443 444
Q ss_pred CC-CCCCcEEEEEEeC
Q 021661 292 PG-RSDPMYVVYSRKA 306 (309)
Q Consensus 292 ~~-~~~p~~~v~a~k~ 306 (309)
+| ..+-=|.++++|.
T Consensus 235 ~g~~gn~e~l~~~~~~ 250 (291)
T 3hp7_A 235 QGGHGNIEFLAHLEKT 250 (291)
T ss_dssp CCGGGCCCEEEEEEEC
T ss_pred CCCCcCHHHHHHhhhc
Confidence 43 3344477788774
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-14 Score=126.71 Aligned_cols=93 Identities=11% Similarity=0.083 Sum_probs=76.7
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
+.+|||+|||+|... ..+..+.+|+|+|+|+.|++.+++ +++++++|+ ..++ ++++||+|+++..+
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~-~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDF---LLLA-SFLKADVVFLSPPW 154 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH---HHHG-GGCCCSEEEECCCC
T ss_pred CCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECCh---HHhc-ccCCCCEEEECCCc
Confidence 789999999999543 222235899999999999998764 378999999 6665 56789999999999
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
++..+....+.++.++|||||.++++.
T Consensus 155 ~~~~~~~~~~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 155 GGPDYATAETFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp SSGGGGGSSSBCTTTSCSSCHHHHHHH
T ss_pred CCcchhhhHHHHHHhhcCCcceeHHHH
Confidence 999888778889999999999877653
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-12 Score=114.50 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=73.0
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
.++.+|||||||+|...... ....+|+|+|+|+.+++.+++ +++++++|+ ......+++||+|++..+++
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDG---TLGYEEEKPYDRVVVWATAP 145 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCG---GGCCGGGCCEEEEEESSBBS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCc---ccccccCCCccEEEECCcHH
Confidence 45789999999998543211 123799999999999998765 478999998 44222457899999999999
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|+. .++.++|||||.+++.++..
T Consensus 146 ~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 146 TLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp SCC------HHHHHTEEEEEEEEEEECSS
T ss_pred HHH------HHHHHHcCCCcEEEEEEcCC
Confidence 986 37899999999999887653
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-13 Score=110.52 Aligned_cols=112 Identities=16% Similarity=0.123 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCC
Q 021661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNP 200 (309)
Q Consensus 129 ~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~ 200 (309)
.....+.+.+...++ ++.+|||+|||+|.... .+..+.+|+|+|+|+.|++.+++ +++++++|+ .
T Consensus 26 ~~~~~~~~~~~~~~~----~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~---~ 98 (171)
T 1ws6_A 26 RLRKALFDYLRLRYP----RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPV---E 98 (171)
T ss_dssp HHHHHHHHHHHHHCT----TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH---H
T ss_pred HHHHHHHHHHHhhcc----CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccH---H
Confidence 334444555544342 37899999999995432 12224459999999999998876 478899988 4
Q ss_pred C-CC-C--CCCceeEEEeccchhccCCHHHHHHHHH--hhcccCcEEEEEecCcc
Q 021661 201 K-LP-F--EDNSFDVITNVVSVDYLTKPIEVFKEMC--QVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 201 ~-lp-~--~~~sfDlVis~~vl~~l~d~~~~l~~i~--rvLkpGG~lii~~~~~~ 249 (309)
+ ++ . ..++||+|+++..++ .+..++++.+. ++|||||.++++++...
T Consensus 99 ~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 99 VFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp HHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred HHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 4 22 1 134799999998766 56667777787 99999999999877643
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=120.03 Aligned_cols=125 Identities=12% Similarity=0.079 Sum_probs=84.4
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCCC--CCCcee
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPF--EDNSFD 210 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp~--~~~sfD 210 (309)
++.+|||||||.|... ....+..+|+++|+|+.+++.+++ +++++++|+ ...+. .+++||
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~---~~~~~~~~~~~fD 171 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDG---LAFVRQTPDNTYD 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH---HHHHHSSCTTCEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH---HHHHHhccCCcee
Confidence 3689999999988543 333456799999999999987654 367889998 55432 467899
Q ss_pred EEEeccchhccCCH----HHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCcee
Q 021661 211 VITNVVSVDYLTKP----IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAV 286 (309)
Q Consensus 211 lVis~~vl~~l~d~----~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~ 286 (309)
+|++.....+.+.. .++++++.++|||||.+++...++... ......+.+.+ ++.||..++..
T Consensus 172 vIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~------------~~~~~~~~~~l-~~~GF~~v~~~ 238 (304)
T 3bwc_A 172 VVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLD------------LELIEKMSRFI-RETGFASVQYA 238 (304)
T ss_dssp EEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTC------------HHHHHHHHHHH-HHHTCSEEEEE
T ss_pred EEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccc------------hHHHHHHHHHH-HhCCCCcEEEE
Confidence 99997665543322 689999999999999999876543211 11122223334 44789877666
Q ss_pred ec
Q 021661 287 DI 288 (309)
Q Consensus 287 ~~ 288 (309)
..
T Consensus 239 ~~ 240 (304)
T 3bwc_A 239 LM 240 (304)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.3e-13 Score=123.18 Aligned_cols=105 Identities=11% Similarity=0.100 Sum_probs=80.1
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCC
Q 021661 136 KYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 136 ~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~ 205 (309)
+.+.+.++. .++.+|||+|||+|... ....+..+|+|+|+|+.|++.++++ .+++.+|+ ...+
T Consensus 186 ~~ll~~l~~--~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~---~~~~-- 258 (343)
T 2pjd_A 186 QLLLSTLTP--HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNV---FSEV-- 258 (343)
T ss_dssp HHHHHHSCT--TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECST---TTTC--
T ss_pred HHHHHhcCc--CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccc---cccc--
Confidence 344455532 23679999999999543 3334667999999999999987764 56788887 4433
Q ss_pred CCceeEEEeccchhc-----cCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 206 DNSFDVITNVVSVDY-----LTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 206 ~~sfDlVis~~vl~~-----l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+++||+|+++..+++ ..+..++++++.++|||||.+++..+.
T Consensus 259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 678999999998885 345689999999999999999887654
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.1e-12 Score=119.59 Aligned_cols=95 Identities=17% Similarity=0.254 Sum_probs=70.2
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCC-------------------CCcEEEecCCCCCCC-
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPV-------------------LTEYVVQDLNLNPKL- 202 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~-------------------~i~~~~~D~~~~~~l- 202 (309)
.++.+|||+|||+|... ... .+..+|+|+|+++.+++.|++ +++++++|+ .+.
T Consensus 104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~---~~~~ 180 (336)
T 2b25_A 104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI---SGAT 180 (336)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT---TCCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh---HHcc
Confidence 45889999999998543 222 345899999999999987653 478899998 554
Q ss_pred -CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 203 -PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 203 -p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
++++++||+|++.. .++..+++++.++|||||.+++..++..
T Consensus 181 ~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 223 (336)
T 2b25_A 181 EDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVNIT 223 (336)
T ss_dssp -------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESSHH
T ss_pred cccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCCHH
Confidence 45667899999853 4555689999999999999998877643
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-12 Score=119.04 Aligned_cols=147 Identities=14% Similarity=0.082 Sum_probs=101.3
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
...+|||||||.|.. +...+|..+++..|. +.+++.+++ +++++.+|+ ...|.+ .+|+|++..
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~---~~~~~~--~~D~~~~~~ 252 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDF---FKDPLP--EADLYILAR 252 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCT---TTSCCC--CCSEEEEES
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCcc---ccCCCC--CceEEEeee
Confidence 457999999999854 456678899999998 778876653 489999998 444433 479999999
Q ss_pred chhccCCH--HHHHHHHHhhcccCcEEEE-EecC-----cchhHHHhh--hhhcCC-CCchhHhHHHHHHHhCCCCCCce
Q 021661 217 SVDYLTKP--IEVFKEMCQVLKPGGLAIV-SFSN-----RCFWTKAIS--IWTSTG-DADHVMIVGAYFHYAGGYEPPQA 285 (309)
Q Consensus 217 vl~~l~d~--~~~l~~i~rvLkpGG~lii-~~~~-----~~~~~~~~~--~w~~~~-~~~h~~~~~~~f~~~~Gf~~~~~ 285 (309)
+||+++|. .++|+++++.|+|||.++| +..- .......++ .+...+ ......-+.+.+ .++||+.+++
T Consensus 253 vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll-~~AGf~~v~v 331 (353)
T 4a6d_A 253 VLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLL-SSAGFRDFQF 331 (353)
T ss_dssp SGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHH-HHHTCEEEEE
T ss_pred ecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHH-HHCCCceEEE
Confidence 99999876 5789999999999996655 4321 112222222 222222 222233344455 5689998776
Q ss_pred eeccCCCCCCCCcEEEEEEeCC
Q 021661 286 VDISPNPGRSDPMYVVYSRKAS 307 (309)
Q Consensus 286 ~~~~~~~~~~~p~~~v~a~k~~ 307 (309)
... ..+..+|+|||-+
T Consensus 332 ~~~------~~~~~~i~ArKgt 347 (353)
T 4a6d_A 332 KKT------GAIYDAILARKGT 347 (353)
T ss_dssp ECC------SSSCEEEEEECCC
T ss_pred EEc------CCceEEEEEEecC
Confidence 542 2466899999965
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-13 Score=114.79 Aligned_cols=99 Identities=9% Similarity=0.017 Sum_probs=74.2
Q ss_pred CCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCC-CCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~-lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|.... ...+..+|+|+|+|+.|++.+++ +++++++|+ .+ ++..+++||+|++
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~~fD~i~~ 106 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA---ERAIDCLTGRFDLVFL 106 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCH---HHHHHHBCSCEEEEEE
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcH---HHhHHhhcCCCCEEEE
Confidence 347899999999996432 12245699999999999998764 267888888 44 3444567999999
Q ss_pred ccchhccCCHHHHHHHHH--hhcccCcEEEEEecCcc
Q 021661 215 VVSVDYLTKPIEVFKEMC--QVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~--rvLkpGG~lii~~~~~~ 249 (309)
+..++. ....+.++.+. ++|||||.++++.....
T Consensus 107 ~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 107 DPPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 876532 34567777887 99999999999877643
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-12 Score=119.76 Aligned_cols=92 Identities=20% Similarity=0.138 Sum_probs=73.5
Q ss_pred CCCCeEEEECCCcchhcc---CCCC-CCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP---PGYK-QDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~~~-~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|.... ...+ ..+|+|+|+|+++++.++++ ++++++|+ .+.+..+++||+|++
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~---~~~~~~~~~fD~Iv~ 150 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG---YYGVPEFSPYDVIFV 150 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEEE
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECCh---hhccccCCCeEEEEE
Confidence 458899999999995432 2223 46799999999999877653 78899998 554445678999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
..+++|+. +++.++|||||.+++.+..
T Consensus 151 ~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 151 TVGVDEVP------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred cCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence 99999987 5789999999999998654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-12 Score=112.37 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=71.9
Q ss_pred CCeEEEECCCcchh---ccCCCC-CCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCC-CCCC--CCceeEE
Q 021661 149 GVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LPFE--DNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~-~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~-lp~~--~~sfDlV 212 (309)
+.+|||||||+|.. +....+ ..+|+++|+|+.+++.|++ +++++++|+ .+ ++.. .++||+|
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPA---LQSLESLGECPAFDLI 140 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCH---HHHHHTCCSCCCCSEE
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH---HHHHHhcCCCCCeEEE
Confidence 68999999998843 344444 7899999999999987764 378999998 43 3322 3489999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++... ..+...+++++.++|||||.+++...
T Consensus 141 ~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~ 171 (248)
T 3tfw_A 141 FIDAD---KPNNPHYLRWALRYSRPGTLIIGDNV 171 (248)
T ss_dssp EECSC---GGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred EECCc---hHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 98653 44667899999999999999988744
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-12 Score=121.93 Aligned_cols=106 Identities=15% Similarity=0.076 Sum_probs=79.6
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCC
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNP 200 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~ 200 (309)
..+.+.+..... ..++.+|||||||+|..... .....+|+|+|+| .|++.++++ ++++++|+ +
T Consensus 49 ~~~~~~i~~~~~--~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~---~ 122 (376)
T 3r0q_C 49 DAYFNAVFQNKH--HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSV---E 122 (376)
T ss_dssp HHHHHHHHTTTT--TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCG---G
T ss_pred HHHHHHHHhccc--cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECch---h
Confidence 344455544433 25578999999999954321 1223499999999 999877653 78999999 7
Q ss_pred CCCCCCCceeEEEeccchhcc---CCHHHHHHHHHhhcccCcEEEEE
Q 021661 201 KLPFEDNSFDVITNVVSVDYL---TKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 201 ~lp~~~~sfDlVis~~vl~~l---~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+++++ ++||+|++..+.+++ .++..+++++.++|||||.++++
T Consensus 123 ~~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 123 DISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp GCCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred hcCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 77766 789999997655555 56889999999999999998775
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.2e-12 Score=111.17 Aligned_cols=93 Identities=15% Similarity=0.134 Sum_probs=72.7
Q ss_pred CCCCeEEEECCCcchhcc---CCC-CCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP---PGY-KQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~~-~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|.... ... +..+|+++|+|+.+++.+++ ++++.++|+ ......+++||+|++
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~v~~ 152 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDG---TLGYEPLAPYDRIYT 152 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCG---GGCCGGGCCEEEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc---ccCCCCCCCeeEEEE
Confidence 457899999999885432 222 44799999999999988765 377888887 322223568999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
..+++|+. +++.++|||||.+++.++..
T Consensus 153 ~~~~~~~~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 153 TAAGPKIP------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp SSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred CCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence 99999987 48999999999999987754
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.31 E-value=7.3e-12 Score=119.94 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=96.3
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCC--CCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP--FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp--~~~~sfDlVis 214 (309)
.++.+|||+|||.|.. +....+.++|+|+|+|+.+++.++++ ++++++|+ ..++ +++++||+|++
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~---~~~~~~~~~~~fD~Vl~ 321 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPSQWCGEQQFDRILL 321 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTHHHHTTCCEEEEEE
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCch---hhchhhcccCCCCEEEE
Confidence 4578999999998843 33334458999999999998876553 68899998 6665 45678999996
Q ss_pred c------cchhccCCH----------------HHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHH
Q 021661 215 V------VSVDYLTKP----------------IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGA 272 (309)
Q Consensus 215 ~------~vl~~l~d~----------------~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~ 272 (309)
. .++++.++. .++|+++.++|||||.+++++..... .+....+..
T Consensus 322 D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~-------------~ene~~v~~ 388 (429)
T 1sqg_A 322 DAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP-------------EENSLQIKA 388 (429)
T ss_dssp ECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG-------------GGTHHHHHH
T ss_pred eCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh-------------hhHHHHHHH
Confidence 2 355554443 47899999999999999998764211 011122233
Q ss_pred HHHHhCCCCCC-------ceeeccCCCCCCCCcEEEEEEeC
Q 021661 273 YFHYAGGYEPP-------QAVDISPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 273 ~f~~~~Gf~~~-------~~~~~~~~~~~~~p~~~v~a~k~ 306 (309)
++....+|+.. ....+.|...+.|.+|+..-+|.
T Consensus 389 ~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 429 (429)
T 1sqg_A 389 FLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK 429 (429)
T ss_dssp HHHHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC-
T ss_pred HHHhCCCCEEeCCCCCCCCeEEECCCCCCCCceEEEEEEEC
Confidence 33333333322 23445565567789999888874
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.30 E-value=7.6e-12 Score=115.09 Aligned_cols=98 Identities=16% Similarity=0.204 Sum_probs=72.4
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|... ... .+.++|+|+|+|+.+++.++++ ++++++|+ ..++..+++||+|++
T Consensus 117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~---~~~~~~~~~fD~Il~ 193 (315)
T 1ixk_A 117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS---LHIGELNVEFDKILL 193 (315)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG---GGGGGGCCCEEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh---hhcccccccCCEEEE
Confidence 45789999999988432 222 2457999999999999876653 67888998 666544678999998
Q ss_pred c------cchhccCC----------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 V------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~------~vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
. .++++.++ ..++|+++.++|||||.+++++..
T Consensus 194 d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 194 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 4 23433332 158999999999999999998664
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.3e-12 Score=117.35 Aligned_cols=92 Identities=14% Similarity=0.068 Sum_probs=72.4
Q ss_pred CCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||||||+|..... ..+..+|+|+|+| .|++.|++ +++++++|+ .++++++++||+|++..
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~~~D~Ivs~~ 113 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKL---EDVHLPFPKVDIIISEW 113 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCT---TTSCCSSSCEEEEEECC
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECch---hhccCCCCcccEEEEeC
Confidence 378999999999954321 1234599999999 58886654 278999999 78887778999999975
Q ss_pred c---hhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 217 S---VDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 v---l~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+ +.+..++..++.++.++|||||.++.
T Consensus 114 ~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 114 MGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred chhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4 44456788999999999999998874
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-12 Score=112.63 Aligned_cols=92 Identities=10% Similarity=0.017 Sum_probs=72.9
Q ss_pred CCeEEEECCCcchhc---cCC----CCCCeEEEEeCCHHHHhhCCC---CCcEEEecCCCCCC---CCCCC-CceeEEEe
Q 021661 149 GVSILDLCSSWVSHF---PPG----YKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPK---LPFED-NSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~----~~~~~v~giD~S~~~l~~a~~---~i~~~~~D~~~~~~---lp~~~-~sfDlVis 214 (309)
+.+|||||||+|... ... .+.++|+|+|+|+.|++.|+. +++++++|+ .+ ++..+ .+||+|++
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~---~~~~~l~~~~~~~fD~I~~ 158 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDC---SDLTTFEHLREMAHPLIFI 158 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCS---SCSGGGGGGSSSCSSEEEE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcc---hhHHHHHhhccCCCCEEEE
Confidence 579999999988532 222 467899999999999988753 589999999 55 35433 47999998
Q ss_pred ccchhccCCHHHHHHHHHh-hcccCcEEEEEec
Q 021661 215 VVSVDYLTKPIEVFKEMCQ-VLKPGGLAIVSFS 246 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~r-vLkpGG~lii~~~ 246 (309)
... | .+...+|.++.+ +|||||.++++..
T Consensus 159 d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 159 DNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp ESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred CCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 665 3 378899999997 9999999998754
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.8e-12 Score=110.51 Aligned_cols=91 Identities=15% Similarity=0.173 Sum_probs=73.1
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCC-CC-CCCCceeEEEe
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LP-FEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~-lp-~~~~sfDlVis 214 (309)
+.+|||||||+|.. +....+..+|+++|+|+.|++.|++ +++++++|+ .+ ++ ..+++||+|++
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNA---LEQFENVNDKVYDMIFI 148 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCG---GGCHHHHTTSCEEEEEE
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH---HHHHHhhccCCccEEEE
Confidence 67999999998843 3444568899999999999988764 478999998 44 34 33678999997
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
... ..+...+++++.++|||||.+++.-
T Consensus 149 ~~~---~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 149 DAA---KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp ETT---SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cCc---HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 643 4567889999999999999998863
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-12 Score=114.31 Aligned_cols=94 Identities=12% Similarity=-0.057 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCC----------CCcEE--EecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPV----------LTEYV--VQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~----------~i~~~--~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|..........+|+|+|+|+ |+..+++ ++.++ ++|+ ..++ +++||+|+|
T Consensus 73 ~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~---~~l~--~~~fD~V~s 146 (265)
T 2oxt_A 73 ELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDI---HTLP--VERTDVIMC 146 (265)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCT---TTSC--CCCCSEEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCH---hHCC--CCCCcEEEE
Confidence 458899999999995432211117999999999 6443321 36788 8898 6765 678999999
Q ss_pred ccchhccCCH----H---HHHHHHHhhcccCc--EEEEEecC
Q 021661 215 VVSVDYLTKP----I---EVFKEMCQVLKPGG--LAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l~d~----~---~~l~~i~rvLkpGG--~lii~~~~ 247 (309)
..+ ++..++ . .+|+++.++||||| .+++.+..
T Consensus 147 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 147 DVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred eCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 877 544332 1 38999999999999 99987654
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-12 Score=116.25 Aligned_cols=94 Identities=12% Similarity=-0.053 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCC----------CCcEE--EecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPV----------LTEYV--VQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~----------~i~~~--~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||||||+|..........+|+|+|+|+ |+..+++ ++.++ ++|+ ..+| +++||+|+|
T Consensus 81 ~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~---~~l~--~~~fD~Vvs 154 (276)
T 2wa2_A 81 ELKGTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDV---TKME--PFQADTVLC 154 (276)
T ss_dssp CCCEEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCG---GGCC--CCCCSEEEE
T ss_pred CCCCEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcH---hhCC--CCCcCEEEE
Confidence 458899999999995432211117999999999 6543321 46788 8898 6665 678999999
Q ss_pred ccchhccCCH----H---HHHHHHHhhcccCc--EEEEEecC
Q 021661 215 VVSVDYLTKP----I---EVFKEMCQVLKPGG--LAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l~d~----~---~~l~~i~rvLkpGG--~lii~~~~ 247 (309)
..+ ++..++ . .+|+++.++||||| .+++.+..
T Consensus 155 d~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 155 DIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 877 444332 1 47999999999999 99887654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-12 Score=113.10 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=71.5
Q ss_pred CCCeEEEECCCcchhccC---C--CCCCeEEEEeCCHHHHhhCCCC----------------------------------
Q 021661 148 PGVSILDLCSSWVSHFPP---G--YKQDRIVGMGMNEEELKRNPVL---------------------------------- 188 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~---~--~~~~~v~giD~S~~~l~~a~~~---------------------------------- 188 (309)
++.+|||+|||+|..... . .+..+|+|+|+|+.|++.|+++
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 467999999999954322 2 3456999999999999987632
Q ss_pred ---Cc-------------EEEecCCCCCCCCC-----CCCceeEEEeccchhccCC---------HHHHHHHHHhhcccC
Q 021661 189 ---TE-------------YVVQDLNLNPKLPF-----EDNSFDVITNVVSVDYLTK---------PIEVFKEMCQVLKPG 238 (309)
Q Consensus 189 ---i~-------------~~~~D~~~~~~lp~-----~~~sfDlVis~~vl~~l~d---------~~~~l~~i~rvLkpG 238 (309)
++ +.++|+ ..... ..++||+|+++..+.+..+ ...+++++.++||||
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 207 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADV---FDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAH 207 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCT---TCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTT
T ss_pred hhhhhhhccccccccccceeeccc---ccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCC
Confidence 45 999998 44321 3458999999876665543 458999999999999
Q ss_pred cEEEEE
Q 021661 239 GLAIVS 244 (309)
Q Consensus 239 G~lii~ 244 (309)
|.+++.
T Consensus 208 G~l~~~ 213 (250)
T 1o9g_A 208 AVIAVT 213 (250)
T ss_dssp CEEEEE
T ss_pred cEEEEe
Confidence 999884
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-12 Score=118.60 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=74.5
Q ss_pred CCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||||||+|..... ..+..+|+|+|+|+ |++.+++ +++++++|+ ++++++ ++||+|++.
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~---~~~~~~-~~~D~Ivs~ 123 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV---EEVSLP-EQVDIIISE 123 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCT---TTCCCS-SCEEEEEEC
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcch---hhCCCC-CceeEEEEe
Confidence 3578999999999954322 23446999999996 7776543 378999999 777655 579999999
Q ss_pred cchhccC--CHHHHHHHHHhhcccCcEEEEEec
Q 021661 216 VSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 216 ~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+++|+. +....+.++.++|||||.++++..
T Consensus 124 ~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 156 (348)
T 2y1w_A 124 PMGYMLFNERMLESYLHAKKYLKPSGNMFPTIG 156 (348)
T ss_dssp CCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEE
T ss_pred CchhcCChHHHHHHHHHHHhhcCCCeEEEEecC
Confidence 8888874 457889999999999999987643
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.3e-12 Score=121.15 Aligned_cols=144 Identities=14% Similarity=0.215 Sum_probs=95.7
Q ss_pred CCCCeEEEECCCcchh---ccCCCCC-CeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC--CCCCceeEE
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQ-DRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~-~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp--~~~~sfDlV 212 (309)
.++.+|||+|||.|.. +....++ ++|+|+|+|+.+++.+++ +++++++|+ ..++ +++++||+|
T Consensus 258 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~---~~~~~~~~~~~fD~V 334 (450)
T 2yxl_A 258 KPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDA---RKAPEIIGEEVADKV 334 (450)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCT---TCCSSSSCSSCEEEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcCh---hhcchhhccCCCCEE
Confidence 4578999999998843 2222344 799999999999986654 377888998 6665 455789999
Q ss_pred Ee------ccchhccCCH----------------HHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhH
Q 021661 213 TN------VVSVDYLTKP----------------IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIV 270 (309)
Q Consensus 213 is------~~vl~~l~d~----------------~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~ 270 (309)
++ ..++++.++. .++|+++.++|||||.+++++..... .++...+
T Consensus 335 l~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~-------------~ene~~v 401 (450)
T 2yxl_A 335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK-------------EENEKNI 401 (450)
T ss_dssp EEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCG-------------GGTHHHH
T ss_pred EEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh-------------hhHHHHH
Confidence 96 2355554443 57899999999999999888764221 1222333
Q ss_pred HHHHHHhCCCCCCce------------eeccCCCCCCCCcEEEEEEeC
Q 021661 271 GAYFHYAGGYEPPQA------------VDISPNPGRSDPMYVVYSRKA 306 (309)
Q Consensus 271 ~~~f~~~~Gf~~~~~------------~~~~~~~~~~~p~~~v~a~k~ 306 (309)
..++....||+...+ +.+.|...+.|.+|+..-+|.
T Consensus 402 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k~ 449 (450)
T 2yxl_A 402 RWFLNVHPEFKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALLEKS 449 (450)
T ss_dssp HHHHHHCSSCEECCCCSSSEECSSTTCEEECHHHHSSCCEEEEEEECC
T ss_pred HHHHHhCCCCEEeecccccccccCCCeEEECCCCCCCCceEEEEEEEC
Confidence 444444344543322 233333346788888888874
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=9.6e-12 Score=108.08 Aligned_cols=92 Identities=20% Similarity=0.184 Sum_probs=72.4
Q ss_pred CCCCeEEEECCCcchhcc---CC-CCCCeEEEEeCCHHHHhhCCC-------------CCcEEEecCCCCCCCCCCCCce
Q 021661 147 TPGVSILDLCSSWVSHFP---PG-YKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSF 209 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~-~~~~~v~giD~S~~~l~~a~~-------------~i~~~~~D~~~~~~lp~~~~sf 209 (309)
.++.+|||||||+|.... .. .+..+|+|+|+|+.+++.+++ +++++++|+ ...+..+++|
T Consensus 76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~f 152 (226)
T 1i1n_A 76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG---RMGYAEEAPY 152 (226)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG---GGCCGGGCCE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCc---ccCcccCCCc
Confidence 457899999999885432 22 244799999999999987643 478899998 5554456789
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|+|++...++++. +++.++|||||.+++.+..
T Consensus 153 D~i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 153 DAIHVGAAAPVVP------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEEECSBBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred CEEEECCchHHHH------HHHHHhcCCCcEEEEEEec
Confidence 9999999887664 6899999999999998764
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=7.2e-13 Score=131.34 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=75.2
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCC--CCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL--PFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~l--p~~~~sfDlVis~~v 217 (309)
+.+|||||||+|... ..+..+++|+|||+|+.+|+.|+. +++|.++|+ +++ ++++++||+|+|..+
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRI---EEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCH---HHHHHHCCTTSCSEEEEESC
T ss_pred CCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCH---HHHhhhccCCCccEEEECcc
Confidence 689999999999543 334458899999999999997653 278999999 777 456789999999999
Q ss_pred hhccCCHHH--HHHHHHhhcccCcEE-EEEec
Q 021661 218 VDYLTKPIE--VFKEMCQVLKPGGLA-IVSFS 246 (309)
Q Consensus 218 l~~l~d~~~--~l~~i~rvLkpGG~l-ii~~~ 246 (309)
|+|++|+.. .+..+.+.|+++|.. ++.+.
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred hhcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence 999988753 355678889999854 44433
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.26 E-value=6.6e-12 Score=111.04 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=73.2
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCC----------------CCCcEEEecCCCCCC-CC--CC
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNP----------------VLTEYVVQDLNLNPK-LP--FE 205 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~----------------~~i~~~~~D~~~~~~-lp--~~ 205 (309)
++.+|||||||+|... ....+..+|+|+|+|+.|++.++ .+++++++|+ .+ ++ ++
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~---~~~l~~~~~ 125 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNA---MKFLPNFFE 125 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCT---TSCGGGTSC
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccH---HHHHHHhcc
Confidence 4679999999999653 33345679999999999997552 3578999998 54 66 67
Q ss_pred CCceeEEEeccchhccCC--------HHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 206 DNSFDVITNVVSVDYLTK--------PIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d--------~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
++++|.|+..+.-.+... ...+++++.++|||||.+++.+....
T Consensus 126 ~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~ 177 (246)
T 2vdv_E 126 KGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKD 177 (246)
T ss_dssp TTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred ccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHH
Confidence 789999986532111100 05899999999999999988766543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.4e-12 Score=112.05 Aligned_cols=92 Identities=16% Similarity=0.158 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCcchhc---cCC-C----CCCeEEEEeCCHHHHhhCCC-------------CCcEEEecCCCCCCCC--
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-Y----KQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLP-- 203 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~----~~~~v~giD~S~~~l~~a~~-------------~i~~~~~D~~~~~~lp-- 203 (309)
.++.+|||||||+|... ... . +..+|+|+|+|+.+++.+++ +++++++|+ ....
T Consensus 79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~~~~~ 155 (227)
T 2pbf_A 79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI---YQVNEE 155 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG---GGCCHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh---Hhcccc
Confidence 44789999999988532 221 2 45699999999999987653 478899998 5543
Q ss_pred --CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 204 --FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 204 --~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
...++||+|++..+++++ ++++.++|||||.+++.++.
T Consensus 156 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 156 EKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred cCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence 456789999999998876 47889999999999988763
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.7e-12 Score=107.64 Aligned_cols=90 Identities=13% Similarity=0.140 Sum_probs=71.2
Q ss_pred CCeEEEECCCcchh---ccCCCC-CCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCC-CCCCCCceeEEEe
Q 021661 149 GVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPK-LPFEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~-~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~-lp~~~~sfDlVis 214 (309)
+.+|||||||+|.. +....+ +.+|+++|+|+.+++.++++ ++++++|+ .+ ++..++ ||+|++
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~-fD~v~~ 132 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDP---LGIAAGQRD-IDILFM 132 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCH---HHHHTTCCS-EEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecH---HHHhccCCC-CCEEEE
Confidence 67999999998843 334444 78999999999999987753 67899998 43 344456 999998
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
... ..+...+++++.++|||||.+++..
T Consensus 133 ~~~---~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 133 DCD---VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp ETT---TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred cCC---hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 742 4578899999999999999998864
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.8e-12 Score=113.99 Aligned_cols=98 Identities=20% Similarity=0.154 Sum_probs=72.9
Q ss_pred CCCCeEEEECCCcchhc---cCCCCC-CeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCC----CCCcee
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQ-DRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPF----EDNSFD 210 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~-~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~----~~~sfD 210 (309)
.++.+|||+|||+|... ....++ ++|+|+|+|+.+++.+++ +++++++|+ ..++. .+++||
T Consensus 82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~---~~~~~~~~~~~~~fD 158 (274)
T 3ajd_A 82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADM---RKYKDYLLKNEIFFD 158 (274)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCH---HHHHHHHHHTTCCEE
T ss_pred CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCCh---HhcchhhhhccccCC
Confidence 45789999999988532 222344 799999999999987654 378889998 55543 256899
Q ss_pred EEEec------cchh------------ccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 211 VITNV------VSVD------------YLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 211 lVis~------~vl~------------~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+|++. .++. ......++|+++.++|||||.+++++..
T Consensus 159 ~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 159 KILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 99986 2222 1245688999999999999999998764
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=103.16 Aligned_cols=95 Identities=14% Similarity=0.154 Sum_probs=68.2
Q ss_pred CCCCeEEEECCCcchhc---cCCCCC---------CeEEEEeCCHHHHhhCCCCCcEE-EecCCCCCCCC--------CC
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQ---------DRIVGMGMNEEELKRNPVLTEYV-VQDLNLNPKLP--------FE 205 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~---------~~v~giD~S~~~l~~a~~~i~~~-~~D~~~~~~lp--------~~ 205 (309)
.++.+|||||||+|... ....+. .+|+|+|+|+.+ ...+++++ ++|+ ...+ ++
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---~~~~~~~~~~~d~---~~~~~~~~~~~~~~ 94 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---PLEGATFLCPADV---TDPRTSQRILEVLP 94 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---CCTTCEEECSCCT---TSHHHHHHHHHHSG
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---cCCCCeEEEeccC---CCHHHHHHHHHhcC
Confidence 45789999999998532 222232 799999999842 12457888 8887 4432 34
Q ss_pred CCceeEEEeccchhc----cCCH-------HHHHHHHHhhcccCcEEEEEecC
Q 021661 206 DNSFDVITNVVSVDY----LTKP-------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 206 ~~sfDlVis~~vl~~----l~d~-------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+++||+|++..+++. ..+. ..+++++.++|||||.+++.+..
T Consensus 95 ~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (196)
T 2nyu_A 95 GRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA 147 (196)
T ss_dssp GGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 568999999665443 2333 48899999999999999987554
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-12 Score=112.33 Aligned_cols=126 Identities=15% Similarity=0.210 Sum_probs=87.7
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCC
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~ 205 (309)
..+.+...+. ++.+|||+|||+|.... .+..+.+|+|+|+|+.+++.++++ +++.++|+ .. +++
T Consensus 110 ~~~~l~~~~~----~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~---~~-~~~ 181 (254)
T 2nxc_A 110 ALKALARHLR----PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL---EA-ALP 181 (254)
T ss_dssp HHHHHHHHCC----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCH---HH-HGG
T ss_pred HHHHHHHhcC----CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECCh---hh-cCc
Confidence 3444544443 37899999999985432 111234999999999999987764 67888887 43 234
Q ss_pred CCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCce
Q 021661 206 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQA 285 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~ 285 (309)
+++||+|+++...++ ...++.++.++|||||.++++..... ....+.+.+ ...||...++
T Consensus 182 ~~~fD~Vv~n~~~~~---~~~~l~~~~~~LkpgG~lils~~~~~----------------~~~~v~~~l-~~~Gf~~~~~ 241 (254)
T 2nxc_A 182 FGPFDLLVANLYAEL---HAALAPRYREALVPGGRALLTGILKD----------------RAPLVREAM-AGAGFRPLEE 241 (254)
T ss_dssp GCCEEEEEEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEGG----------------GHHHHHHHH-HHTTCEEEEE
T ss_pred CCCCCEEEECCcHHH---HHHHHHHHHHHcCCCCEEEEEeeccC----------------CHHHHHHHH-HHCCCEEEEE
Confidence 678999999876654 47899999999999999988643211 123334445 3488987665
Q ss_pred ee
Q 021661 286 VD 287 (309)
Q Consensus 286 ~~ 287 (309)
..
T Consensus 242 ~~ 243 (254)
T 2nxc_A 242 AA 243 (254)
T ss_dssp EE
T ss_pred ec
Confidence 44
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.2e-11 Score=107.74 Aligned_cols=91 Identities=25% Similarity=0.268 Sum_probs=71.5
Q ss_pred CCCCeEEEECCCcchhcc---CCCC------CCeEEEEeCCHHHHhhCCC-------------CCcEEEecCCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFP---PGYK------QDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPF 204 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~~~------~~~v~giD~S~~~l~~a~~-------------~i~~~~~D~~~~~~lp~ 204 (309)
.++.+|||||||+|.... ...+ ..+|+++|+++.+++.+++ +++++++|+ .. ++
T Consensus 83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~---~~-~~ 158 (227)
T 1r18_A 83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG---RK-GY 158 (227)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG---GG-CC
T ss_pred CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCc---cc-CC
Confidence 457899999999885432 1112 3599999999999987654 477899998 44 33
Q ss_pred CC-CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 205 ED-NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 205 ~~-~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++ ++||+|++..+++++. +++.++|||||.+++.+..
T Consensus 159 ~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 159 PPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred CcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence 33 7899999999998875 7899999999999998764
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=117.57 Aligned_cols=95 Identities=14% Similarity=0.007 Sum_probs=71.0
Q ss_pred CCCCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhC-------C----------CCCcEEEecCCCCCC-CCC-
Q 021661 147 TPGVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRN-------P----------VLTEYVVQDLNLNPK-LPF- 204 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a-------~----------~~i~~~~~D~~~~~~-lp~- 204 (309)
.++.+|||||||+|.... ...+..+|+|+|+|+.+++.| + .+++++++|.. .. .++
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~--~~~~~~~ 318 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF--VDNNRVA 318 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS--TTCHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc--ccccccc
Confidence 458899999999996432 223446899999999988776 3 34677787651 11 122
Q ss_pred -CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 205 -EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 205 -~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..++||+|+++.++ +.+++..+|+++.++|||||.+++.
T Consensus 319 ~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 319 ELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp HHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEe
Confidence 24689999998766 4567888999999999999998875
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-11 Score=107.96 Aligned_cols=105 Identities=9% Similarity=0.157 Sum_probs=75.9
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCC----------CCcEEEecCC
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPV----------LTEYVVQDLN 197 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~----------~i~~~~~D~~ 197 (309)
..+...+....+. .++.+|||||||+|.. +... .++++|+++|+|++|++.|++ +++++++|+
T Consensus 42 ~~~l~~l~~~~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda- 118 (221)
T 3dr5_A 42 GQLLTTLAATTNG--NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRP- 118 (221)
T ss_dssp HHHHHHHHHHSCC--TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH-
T ss_pred HHHHHHHHHhhCC--CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCH-
Confidence 3344444444442 2345999999998843 2232 347899999999999987754 377888887
Q ss_pred CCCC-CC-CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 198 LNPK-LP-FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 198 ~~~~-lp-~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+ ++ +++++||+|++... ..+...+++++.++|||||.+++.
T Consensus 119 --~~~l~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 119 --LDVMSRLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp --HHHGGGSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEET
T ss_pred --HHHHHHhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEe
Confidence 33 22 33678999998754 346678999999999999999985
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.21 E-value=9.8e-11 Score=99.90 Aligned_cols=107 Identities=13% Similarity=0.083 Sum_probs=72.0
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCC------
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPF------ 204 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~------ 204 (309)
.++.++..+.-- ..++.+|||+|||+|.... .+...++|+|+|+++.. ...+++++++|+ .+.+.
T Consensus 11 ~KL~ei~~~~~~--~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~---~~~~v~~~~~D~---~~~~~~~~~~~ 82 (191)
T 3dou_A 11 FKLEFLLDRYRV--VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME---EIAGVRFIRCDI---FKETIFDDIDR 82 (191)
T ss_dssp HHHHHHHHHHCC--SCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC---CCTTCEEEECCT---TSSSHHHHHHH
T ss_pred HHHHHHHHHcCC--CCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc---cCCCeEEEEccc---cCHHHHHHHHH
Confidence 344555544421 2458899999999985432 12227899999999852 234699999999 55431
Q ss_pred --C---CCceeEEEeccchhcc-----------CCHHHHHHHHHhhcccCcEEEEEec
Q 021661 205 --E---DNSFDVITNVVSVDYL-----------TKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 205 --~---~~sfDlVis~~vl~~l-----------~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
. .++||+|++....... .....+++.+.++|||||.|++.+.
T Consensus 83 ~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 83 ALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 1 1489999996432211 1135789999999999999988654
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.2e-12 Score=109.52 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=71.3
Q ss_pred CCCCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCC-CceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFED-NSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~-~sfDlVis 214 (309)
.++.+|||||||+|.... ...+ .+|+++|+|+.+++.+++ ++++.++|+. .++++ ..||+|++
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~----~~~~~~~~fD~Ii~ 164 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS----KGFPPKAPYDVIIV 164 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG----GCCGGGCCEEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc----cCCCCCCCccEEEE
Confidence 457899999999885432 2223 799999999999988765 3678888862 23333 35999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
..+++++.+ ++.++|||||.+++.+++..
T Consensus 165 ~~~~~~~~~------~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 165 TAGAPKIPE------PLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp CSBBSSCCH------HHHHTEEEEEEEEEEECSSS
T ss_pred CCcHHHHHH------HHHHhcCCCcEEEEEEecCC
Confidence 999998863 78999999999999988653
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-11 Score=108.58 Aligned_cols=91 Identities=18% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCC-CCC--CCceeEEE
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL-PFE--DNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~l-p~~--~~sfDlVi 213 (309)
+.+|||||||+|.. +....++.+|+++|+|+.+++.|++ +++++++|+ ... +.. +++||+|+
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA---LQLGEKLELYPLFDVLF 131 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCG---GGSHHHHTTSCCEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH---HHHHHhcccCCCccEEE
Confidence 67999999998853 2333457899999999999987764 377888888 442 432 57899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+....+ +...+++++.++|||||.++++.
T Consensus 132 ~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 132 IDAAKG---QYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp EEGGGS---CHHHHHHHHGGGEEEEEEEEEET
T ss_pred ECCCHH---HHHHHHHHHHHHcCCCeEEEEEc
Confidence 987653 78899999999999999999873
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.21 E-value=7e-12 Score=108.78 Aligned_cols=92 Identities=11% Similarity=0.106 Sum_probs=70.9
Q ss_pred CCeEEEECCCcchh---ccCCCC-CCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCC-C-CCC----Cce
Q 021661 149 GVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL-P-FED----NSF 209 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~-~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~l-p-~~~----~sf 209 (309)
+.+|||||||+|.. +....+ ..+|+++|+|+.+++.++++ ++++++|+ .+. + +.. ++|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~~~f 141 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA---KDTLAELIHAGQAWQY 141 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH---HHHHHHHHTTTCTTCE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH---HHHHHHhhhccCCCCc
Confidence 67999999998843 344444 78999999999999877642 78899998 332 2 111 789
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|+|++... ..+...+++++.++|||||.+++...
T Consensus 142 D~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 142 DLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp EEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99997653 34678899999999999999998744
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=106.32 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=70.9
Q ss_pred CCeEEEECCCcchh---ccCCCC-CCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCC-C-CC---CCcee
Q 021661 149 GVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL-P-FE---DNSFD 210 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~-~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~l-p-~~---~~sfD 210 (309)
+.+|||||||+|.. +....+ +++|+++|+++.+++.+++ +++++++|+ .+. + +. .++||
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA---LDSLQQIENEKYEPFD 135 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH---HHHHHHHHHTTCCCCS
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH---HHHHHHHHhcCCCCcC
Confidence 68999999998843 344444 7899999999999987764 278899998 332 1 11 25799
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+|++.... .+...+++++.++|||||.+++...
T Consensus 136 ~v~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 136 FIFIDADK---QNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp EEEECSCG---GGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred EEEEcCCc---HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 99987653 3567899999999999998888744
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-11 Score=115.11 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=77.7
Q ss_pred CCCCeEEEECCCcchhccC---CC-CCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSHFPP---GY-KQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~---~~-~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||+|..... .. +..+|+|+|+|+.|++.|+++ ++++++|+ .+++.+.++||+|++
T Consensus 202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~---~~~~~~~~~~D~Ii~ 278 (354)
T 3tma_A 202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADA---RHLPRFFPEVDRILA 278 (354)
T ss_dssp CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCG---GGGGGTCCCCSEEEE
T ss_pred CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCCh---hhCccccCCCCEEEE
Confidence 4578999999999965422 22 568999999999999987753 78999999 788777778999999
Q ss_pred ccchhcc--------CCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VVSVDYL--------TKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~vl~~l--------~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+...... .....+++++.++|||||.+++.++++
T Consensus 279 npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 279 NPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp CCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred CCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 7543321 123789999999999999998887754
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.1e-11 Score=113.78 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=72.5
Q ss_pred CCCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCC-CCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPF-EDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~-~~~sfDlVis 214 (309)
++.+|||+|||.|.. +... ...++|+++|+|+.+++.+++ ++.++++|+ ..++. .+++||+|++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~---~~~~~~~~~~fD~Il~ 193 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDG---RVFGAAVPEMFDAILL 193 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCS---TTHHHHSTTCEEEEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCH---HHhhhhccccCCEEEE
Confidence 588999999998843 2222 245799999999999987665 367888998 66653 4578999997
Q ss_pred c------cchhccCC----------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 V------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~------~vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
. .++.+.++ ..++|+++.++|||||.+++++..
T Consensus 194 D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 194 DAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp ECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 2 23433322 247899999999999999998764
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-12 Score=112.76 Aligned_cols=92 Identities=13% Similarity=0.117 Sum_probs=71.2
Q ss_pred CCeEEEECCCcchh---ccCCC-CCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCC-CCC-----CCce
Q 021661 149 GVSILDLCSSWVSH---FPPGY-KQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL-PFE-----DNSF 209 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~-~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~l-p~~-----~~sf 209 (309)
+.+|||||||+|.. +.... ++++|+++|+|+.|++.|++ +++++++|+ .+. +.. +++|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda---~~~l~~~~~~~~~~~f 137 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA---LDTLHSLLNEGGEHQF 137 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH---HHHHHHHHHHHCSSCE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH---HHHHHHHhhccCCCCE
Confidence 67999999998843 23333 47899999999999887654 378999998 443 221 4789
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|+|++... ..+...+++++.++|||||.+++...
T Consensus 138 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 138 DFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred eEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECC
Confidence 99998764 34677899999999999999998743
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-11 Score=112.49 Aligned_cols=97 Identities=13% Similarity=0.007 Sum_probs=68.3
Q ss_pred CCCCeEEEECCCcchhccCCCCCCeEEEEeC----CHHHHhhCC------CCCcEEEe-cCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFPPGYKQDRIVGMGM----NEEELKRNP------VLTEYVVQ-DLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~~~~~~v~giD~----S~~~l~~a~------~~i~~~~~-D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||||||+|.........++|+|+|+ ++.+++..+ .++.++++ |+ ..++ .++||+|+|.
T Consensus 81 ~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~---~~l~--~~~fD~V~sd 155 (305)
T 2p41_A 81 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDV---FFIP--PERCDTLLCD 155 (305)
T ss_dssp CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCT---TTSC--CCCCSEEEEC
T ss_pred CCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEecccc---ccCC--cCCCCEEEEC
Confidence 4578999999999854322111168999999 665544322 23778888 88 6654 5689999997
Q ss_pred cchh---ccCCHH---HHHHHHHhhcccCcEEEEEecCc
Q 021661 216 VSVD---YLTKPI---EVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 216 ~vl~---~l~d~~---~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.+.+ +..+.. .+|.++.++|||||.+++.+..+
T Consensus 156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 6653 222322 58999999999999998876654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-11 Score=108.39 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=77.6
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCC-CCCCeEEEEeC-CHHHHhhCCCC------------------CcE
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPG-YKQDRIVGMGM-NEEELKRNPVL------------------TEY 191 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~-~~~~~v~giD~-S~~~l~~a~~~------------------i~~ 191 (309)
.+.+++..... ..++.+|||||||+|... ..+ ....+|+|+|+ |+.|++.++++ +++
T Consensus 66 ~l~~~l~~~~~--~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~ 143 (281)
T 3bzb_A 66 ALADTLCWQPE--LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKV 143 (281)
T ss_dssp HHHHHHHHCGG--GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEE
T ss_pred HHHHHHHhcch--hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEE
Confidence 34445544332 134789999999999532 111 22348999999 89999876543 345
Q ss_pred EEecCCCC-CCCC--CCCCceeEEEeccchhccCCHHHHHHHHHhhcc---c--CcEEEEEecC
Q 021661 192 VVQDLNLN-PKLP--FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLK---P--GGLAIVSFSN 247 (309)
Q Consensus 192 ~~~D~~~~-~~lp--~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLk---p--GG~lii~~~~ 247 (309)
...|.... ..+. +.+++||+|++..+++|..+...+++.+.++|| | ||.+++.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~ 207 (281)
T 3bzb_A 144 VPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTH 207 (281)
T ss_dssp EECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred EEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence 55554210 1111 035789999999999999999999999999999 9 9987775543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.9e-11 Score=117.89 Aligned_cols=98 Identities=12% Similarity=0.111 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCC-CCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLP-FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp-~~~~sfDlVis 214 (309)
.++.+|||+|||+|.. +... ...++|+|+|+|+.+++.++++ +.++++|+ ..++ ..+++||+|++
T Consensus 100 ~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da---~~l~~~~~~~FD~Il~ 176 (464)
T 3m6w_A 100 KPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPP---RALAEAFGTYFHRVLL 176 (464)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCH---HHHHHHHCSCEEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCH---HHhhhhccccCCEEEE
Confidence 4588999999998843 2222 2347999999999999987664 67788887 5554 24578999995
Q ss_pred c------cchhccCCH----------------HHHHHHHHhhcccCcEEEEEecC
Q 021661 215 V------VSVDYLTKP----------------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~------~vl~~l~d~----------------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
. .++.+-++. .++|+++.++|||||.|++++..
T Consensus 177 D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 177 DAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp ECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2 234333332 67999999999999999998764
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-11 Score=110.04 Aligned_cols=92 Identities=8% Similarity=0.158 Sum_probs=70.0
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCce---eEEE
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSF---DVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sf---DlVi 213 (309)
+.+|||+|||+|.. +... +..+|+|+|+|+.+++.|+++ ++++++|+ .. +++ ++| |+|+
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~---~~-~~~-~~f~~~D~Iv 197 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF---LE-PFK-EKFASIEMIL 197 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST---TG-GGG-GGTTTCCEEE
T ss_pred CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcc---hh-hcc-cccCCCCEEE
Confidence 57999999999953 2333 678999999999999987653 78999998 44 222 478 9999
Q ss_pred ecc------------chhccC--------CHHHHHHHHH-hhcccCcEEEEEecC
Q 021661 214 NVV------------SVDYLT--------KPIEVFKEMC-QVLKPGGLAIVSFSN 247 (309)
Q Consensus 214 s~~------------vl~~l~--------d~~~~l~~i~-rvLkpGG~lii~~~~ 247 (309)
++- +. |-+ +...+++++. +.|||||.+++++..
T Consensus 198 snPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 198 SNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp ECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred EcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 971 22 211 2237899999 999999999998664
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.7e-11 Score=119.08 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=73.7
Q ss_pred CCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||||||+|.... ...+..+|+|+|+|+ |++.|++ +++++++|+ .+++++ ++||+|++.
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~---~~~~~~-~~fD~Ivs~ 231 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKV---EEVSLP-EQVDIIISE 231 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCT---TTCCCS-SCEEEEECC
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECch---hhCccC-CCeEEEEEe
Confidence 347899999999995432 223456999999998 8876653 378999999 676654 579999999
Q ss_pred cchhccCC--HHHHHHHHHhhcccCcEEEEEe
Q 021661 216 VSVDYLTK--PIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 216 ~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~ 245 (309)
.+++|+.+ ....+.++.++|||||.++++.
T Consensus 232 ~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 232 PMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp CCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred CchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 88888754 4678889999999999988654
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-11 Score=110.17 Aligned_cols=92 Identities=13% Similarity=0.071 Sum_probs=71.4
Q ss_pred CCCeEEEECCCcchhccC-CCCCC-eEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQD-RIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~-~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||+|||+|..... +..+. +|+|+|+|+.|++.++++ ++++++|+ .+++. +++||+|++..
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~---~~~~~-~~~fD~Vi~~~ 200 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---RDFPG-ENIADRILMGY 200 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---TTCCC-CSCEEEEEECC
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCH---HHhcc-cCCccEEEECC
Confidence 378999999999854322 21222 799999999999987653 67999999 66655 67899999864
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
. .+...++.++.++|||||.+++....
T Consensus 201 p----~~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 201 V----VRTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp C----SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred c----hhHHHHHHHHHHHCCCCeEEEEEEee
Confidence 3 45578999999999999988876553
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-11 Score=108.77 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=71.0
Q ss_pred CCeEEEECCCcchh---ccCCCC-CCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCC-CC-C-----CCCc
Q 021661 149 GVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPK-LP-F-----EDNS 208 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~-~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~-lp-~-----~~~s 208 (309)
+.+|||||||+|.. +....+ +++|+++|+|+.+++.|++ +++++++|+ .+ ++ + ++++
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda---~~~l~~l~~~~~~~~~ 156 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA---LPVLDEMIKDEKNHGS 156 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH---HHHHHHHHHSGGGTTC
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH---HHHHHHHHhccCCCCC
Confidence 67999999998843 233334 7899999999999988765 367899998 43 23 1 1578
Q ss_pred eeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 209 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 209 fDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
||+|++... ..+...+++++.++|||||.++++.
T Consensus 157 fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 157 YDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp BSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 999998754 3467899999999999999998864
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.8e-11 Score=104.13 Aligned_cols=95 Identities=11% Similarity=0.065 Sum_probs=71.4
Q ss_pred CCeEEEECCCcchh---ccCCCC-CCeEEEEeCCHHHHhhCCC---------CCcEEEecCCC-CCCCCCCC--CceeEE
Q 021661 149 GVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNL-NPKLPFED--NSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~-~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~-~~~lp~~~--~sfDlV 212 (309)
+.+|||||||+|.. +....+ +++|+++|+|+.+++.|++ +++++++|+.. ...++..+ ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 67999999998843 334444 6799999999999988764 37788888620 01223333 789999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++... ..+...+++++.++|||||.+++...
T Consensus 153 ~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 153 FIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp EECSC---GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred EECCC---HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 98764 34678899999999999999998744
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-10 Score=107.74 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=71.9
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCC-C-CCCCcee
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKL-P-FEDNSFD 210 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~l-p-~~~~sfD 210 (309)
++.+|||||||+|... ....+..+|+++|+|+.|++.|++ +++++++|+ ... + .++++||
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~---~~~l~~~~~~~fD 196 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDG---VAFLKNAAEGSYD 196 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCH---HHHHHTSCTTCEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCH---HHHHHhccCCCcc
Confidence 3689999999988543 333456799999999999987653 367889997 432 2 3457899
Q ss_pred EEEeccch--hccCC--HHHHHHHHHhhcccCcEEEEEecC
Q 021661 211 VITNVVSV--DYLTK--PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 211 lVis~~vl--~~l~d--~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+|++.... +...+ ...+++++.++|||||.+++...+
T Consensus 197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 237 (334)
T 1xj5_A 197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES 237 (334)
T ss_dssp EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 99986532 11111 378999999999999999997544
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-10 Score=103.19 Aligned_cols=87 Identities=16% Similarity=0.026 Sum_probs=69.0
Q ss_pred CCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCCC------------CcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 149 GVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~~------------i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
+.+|||||||+|... ....+ .+|+++|+++.|++.|+++ ++++.+|+ .... ++||+|++
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~---~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL---DLDI---KKYDLIFC 145 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGG---GSCC---CCEEEEEE
T ss_pred CCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechH---HHHH---hhCCEEEE
Confidence 579999999988543 22235 8999999999999998764 46777787 4433 78999998
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
. ..++..+++++.++|||||.+++...+
T Consensus 146 d-----~~dp~~~~~~~~~~L~pgG~lv~~~~~ 173 (262)
T 2cmg_A 146 L-----QEPDIHRIDGLKRMLKEDGVFISVAKH 173 (262)
T ss_dssp S-----SCCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred C-----CCChHHHHHHHHHhcCCCcEEEEEcCC
Confidence 6 356777999999999999999887544
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.8e-11 Score=105.00 Aligned_cols=95 Identities=12% Similarity=0.045 Sum_probs=72.9
Q ss_pred CCCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
++.+|||||||+|-... ...+..+|+++|+++.|++.++++ .++.+.|. .. +.+.+.||+|++.-+
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~---~~-~~p~~~~DvaL~lkt 207 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADL---LE-DRLDEPADVTLLLKT 207 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCT---TT-SCCCSCCSEEEETTC
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeee---cc-cCCCCCcchHHHHHH
Confidence 37799999999995432 335778999999999999987764 56788887 33 335677999999999
Q ss_pred hhccCCHH-HHHHHHHhhcccCcEEEEEecC
Q 021661 218 VDYLTKPI-EVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 218 l~~l~d~~-~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++|+++.. ..+-++...|+|+|.+| +++.
T Consensus 208 i~~Le~q~kg~g~~ll~aL~~~~vvV-Sfp~ 237 (281)
T 3lcv_B 208 LPCLETQQRGSGWEVIDIVNSPNIVV-TFPT 237 (281)
T ss_dssp HHHHHHHSTTHHHHHHHHSSCSEEEE-EEEC
T ss_pred HHHhhhhhhHHHHHHHHHhCCCCEEE-eccc
Confidence 99996542 23339999999988665 4454
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.1e-11 Score=107.22 Aligned_cols=93 Identities=10% Similarity=0.003 Sum_probs=73.5
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||+|||+|... ....+..+|+|+|+|+.+++.+++ ++.++++|+ .+++. .++||+|++.
T Consensus 118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~---~~~~~-~~~~D~Vi~d 193 (272)
T 3a27_A 118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADN---RDVEL-KDVADRVIMG 193 (272)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCG---GGCCC-TTCEEEEEEC
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECCh---HHcCc-cCCceEEEEC
Confidence 34789999999988543 222345699999999999998765 367999999 55543 5689999998
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
... +..+++.++.+.|||||.++++...
T Consensus 194 ~p~----~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 194 YVH----KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp CCS----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred Ccc----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 653 6778999999999999999887553
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.6e-11 Score=112.39 Aligned_cols=97 Identities=10% Similarity=0.110 Sum_probs=71.8
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCCC----CCCceeEE
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPF----EDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp~----~~~sfDlV 212 (309)
++.+|||+|||+|... ..+..+.+|+++|+|+.|++.++++ ++++++|+ .++.. .+++||+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~---~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDA---MKFIQREERRGSTYDII 229 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCH---HHHHHHHHHHTCCBSEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcH---HHHHHHHHhcCCCceEE
Confidence 3679999999998543 2222355999999999999987653 67888888 44321 14689999
Q ss_pred Eecc----------chhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 213 TNVV----------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 213 is~~----------vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++.- ++++..+...+++++.++|||||.++++...
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 9942 2234456789999999999999998777654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=105.04 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=70.2
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCC-CCCCCCceeEE
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~-lp~~~~sfDlV 212 (309)
+.+|||||||+|... ....+..+|+++|+|+.+++.+++ +++++++|+ .. ++..+++||+|
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~---~~~l~~~~~~fD~I 167 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG---AEYVRKFKNEFDVI 167 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH---HHHGGGCSSCEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH---HHHHhhCCCCceEE
Confidence 579999999988543 233356799999999999986653 367888887 33 34445789999
Q ss_pred EeccchhccC-----CHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 213 TNVVSVDYLT-----KPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 213 is~~vl~~l~-----d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++...-.++. ...++++++.++|||||.+++...++
T Consensus 168 i~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 208 (296)
T 1inl_A 168 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP 208 (296)
T ss_dssp EEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCc
Confidence 9854322121 22789999999999999999986553
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=105.10 Aligned_cols=96 Identities=11% Similarity=0.071 Sum_probs=71.5
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCC-CCCCCCceeEE
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~-lp~~~~sfDlV 212 (309)
+.+|||||||+|... ....+..+|+++|+++.+++.|++ +++++.+|+ .. ++..+++||+|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~---~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG---FMHIAKSENQYDVI 152 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS---HHHHHTCCSCEEEE
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH---HHHHhhCCCCeeEE
Confidence 689999999988543 222245799999999999987654 367889997 33 33345789999
Q ss_pred EeccchhccCC----HHHHHHHHHhhcccCcEEEEEecC
Q 021661 213 TNVVSVDYLTK----PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 213 is~~vl~~l~d----~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++.....+.+. ..++++++.++|||||.+++...+
T Consensus 153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~ 191 (275)
T 1iy9_A 153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN 191 (275)
T ss_dssp EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 99654322211 268999999999999999998654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.4e-11 Score=109.21 Aligned_cols=95 Identities=22% Similarity=0.250 Sum_probs=71.7
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCC--CCCCCceeEEEec
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKL--PFEDNSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~l--p~~~~sfDlVis~ 215 (309)
+.+|||||||+|... ...+++.+|+++|+++.|++.|++ +++++++|+ ... .+++++||+|++.
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da---~~~l~~~~~~~fDvIi~D 166 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDA---RMVAESFTPASRDVIIRD 166 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCH---HHHHHTCCTTCEEEEEEC
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcH---HHHHhhccCCCCCEEEEC
Confidence 359999999988543 333577899999999999998765 378899998 433 2346789999986
Q ss_pred cchhcc-C---CHHHHHHHHHhhcccCcEEEEEec
Q 021661 216 VSVDYL-T---KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 216 ~vl~~l-~---d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
...... + ...+++++++++|||||.+++...
T Consensus 167 ~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 167 VFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp CSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 433221 1 126899999999999999988754
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-10 Score=106.13 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=71.9
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC-------------CCcEEEecCCCCCC-CCCCCCceeE
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPK-LPFEDNSFDV 211 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~-------------~i~~~~~D~~~~~~-lp~~~~sfDl 211 (309)
+.+|||||||+|... ....+..+|+++|+++.+++.|++ +++++++|+ .. ++..+++||+
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~---~~~l~~~~~~fD~ 154 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDA---RAYLERTEERYDV 154 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCH---HHHHHHCCCCEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchH---HHHHHhcCCCccE
Confidence 679999999988543 333356799999999999986543 367888988 44 3434678999
Q ss_pred EEeccchhc-cCC------HHHHHHHHHhhcccCcEEEEEec
Q 021661 212 ITNVVSVDY-LTK------PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 212 Vis~~vl~~-l~d------~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|++....++ ... ..++++++.++|||||.+++...
T Consensus 155 Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 999865544 111 37899999999999999988753
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-10 Score=106.71 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=71.2
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCC-CCCCCCceeEE
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~-lp~~~~sfDlV 212 (309)
+.+|||||||+|... ....+..+|+++|+|+.+++.+++ +++++++|+ .. ++..+++||+|
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~---~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA---SKFLENVTNTYDVI 193 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH---HHHHHHCCSCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccH---HHHHhhcCCCceEE
Confidence 679999999988543 333356799999999999987643 367888887 33 33335789999
Q ss_pred Eeccchhc--cCCH--HHHHHHHHhhcccCcEEEEEecCc
Q 021661 213 TNVVSVDY--LTKP--IEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 213 is~~vl~~--l~d~--~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++...-.. ..+. .++++++.++|||||.+++...++
T Consensus 194 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~ 233 (321)
T 2pt6_A 194 IVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 233 (321)
T ss_dssp EEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred EECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCc
Confidence 98653111 1111 789999999999999999986553
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.4e-11 Score=103.09 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=78.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~ 205 (309)
.+..++...+.. .++.+|||||||+|.+.....+..+|+|+|+++.|++.++++ ..+.+.|. ...+.+
T Consensus 92 ~ld~fY~~i~~~--~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~---~~~~~~ 166 (253)
T 3frh_A 92 ELDTLYDFIFSA--ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDV---LCAPPA 166 (253)
T ss_dssp GHHHHHHHHTSS--CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCT---TTSCCC
T ss_pred hHHHHHHHHhcC--CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeec---ccCCCC
Confidence 334455544543 457899999999996544333788999999999999987764 56888898 555544
Q ss_pred CCceeEEEeccchhccCCH-HHHHHHHHhhcccCcEEEEEecC
Q 021661 206 DNSFDVITNVVSVDYLTKP-IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d~-~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++||+|++.-++||+.+. .....++.+.|+++|. +|+++.
T Consensus 167 -~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~v-vVsfPt 207 (253)
T 3frh_A 167 -EAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRM-AVSFPT 207 (253)
T ss_dssp -CBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEE-EEEEEC
T ss_pred -CCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCE-EEEcCh
Confidence 589999999999999543 2344488889999864 455663
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=9.1e-11 Score=106.23 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=72.2
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCC-CCCCCCceeE
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~-lp~~~~sfDl 211 (309)
++.+|||||||.|... ....+..+|+++|+++.+++.+++ +++++++|+ .. ++..+++||+
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~---~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA---SKFLENVTNTYDV 154 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH---HHHHHHCCSCEEE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECCh---HHHHHhCCCCceE
Confidence 3689999999988543 333356799999999999987543 367888887 43 2323578999
Q ss_pred EEeccchhccC--CH--HHHHHHHHhhcccCcEEEEEecCc
Q 021661 212 ITNVVSVDYLT--KP--IEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 212 Vis~~vl~~l~--d~--~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
|++.....+.+ +. .++++++.++|||||.+++...++
T Consensus 155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~ 195 (283)
T 2i7c_A 155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESL 195 (283)
T ss_dssp EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 99865332221 12 699999999999999999886653
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=7.8e-11 Score=107.84 Aligned_cols=97 Identities=14% Similarity=0.047 Sum_probs=70.2
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCC-CCCCCCceeE
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~-lp~~~~sfDl 211 (309)
++.+|||||||+|... ....+..+|+++|+++.|++.|++ +++++.+|+ .. ++..+++||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da---~~~l~~~~~~fD~ 171 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDG---FEFMKQNQDAFDV 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH---HHHHHTCSSCEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcH---HHHHhhCCCCceE
Confidence 3689999999988543 233345799999999999987654 367888887 43 3444678999
Q ss_pred EEeccchhccC----CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~~vl~~l~----d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|++.......+ ...++++++.++|||||.+++...+
T Consensus 172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 211 (304)
T 2o07_A 172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC 211 (304)
T ss_dssp EEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence 99865432211 1257899999999999999988644
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=109.75 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=69.9
Q ss_pred CCCeEEEECCCcchhccC-C-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec-
Q 021661 148 PGVSILDLCSSWVSHFPP-G-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV- 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~- 215 (309)
++.+|||||||+|.+... + ....+|+|+|.|+ |++.|++ +++++++|+ +++.++ ++||+|+|-
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~---~~~~lp-e~~DvivsE~ 157 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPV---ETVELP-EQVDAIVSEW 157 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCT---TTCCCS-SCEEEEECCC
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeee---eeecCC-ccccEEEeec
Confidence 478999999999954322 2 2234899999996 7776654 288999999 777766 579999984
Q ss_pred --cchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 216 --VSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 216 --~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..+.+-.....++....|.|||||.++-+
T Consensus 158 ~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 158 MGYGLLHESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp CBTTBTTTCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ccccccccchhhhHHHHHHhhCCCCceECCc
Confidence 44555556789999999999999987643
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.07 E-value=7.1e-11 Score=104.03 Aligned_cols=92 Identities=10% Similarity=0.112 Sum_probs=70.5
Q ss_pred CCeEEEECCCcchh---ccCCCC-CCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCC-C-C-----CCCc
Q 021661 149 GVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL-P-F-----EDNS 208 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~-~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~l-p-~-----~~~s 208 (309)
+.+|||||||+|.. +....+ +++|+++|+|+.+++.+++ +++++++|+ .+. + + ++++
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda---~~~l~~l~~~~~~~~~ 147 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA---MLALDNLLQGQESEGS 147 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH---HHHHHHHHHSTTCTTC
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH---HHHHHHHHhccCCCCC
Confidence 67999999998843 233333 7899999999999988764 277899998 332 2 1 2578
Q ss_pred eeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 209 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 209 fDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
||+|++... ..+...+++++.++|||||.++++..
T Consensus 148 fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 148 YDFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred cCEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 999998643 23568899999999999999988743
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=104.58 Aligned_cols=92 Identities=12% Similarity=0.053 Sum_probs=67.6
Q ss_pred CCCCCeEEEECCCc------ch-hccCCCC-CCeEEEEeCCHHHHhhCCCCCcE-EEecCCCCCCCCCCCCceeEEEecc
Q 021661 146 NTPGVSILDLCSSW------VS-HFPPGYK-QDRIVGMGMNEEELKRNPVLTEY-VVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 146 ~~~~~~ILDiGcG~------g~-~~~~~~~-~~~v~giD~S~~~l~~a~~~i~~-~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
..++.+|||+|||+ |. .+....+ .++|+|+|+|+. + .++++ +++|+ ..++++ ++||+|+++.
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v----~~v~~~i~gD~---~~~~~~-~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V----SDADSTLIGDC---ATVHTA-NKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B----CSSSEEEESCG---GGCCCS-SCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C----CCCEEEEECcc---ccCCcc-CcccEEEEcC
Confidence 35688999999944 53 2222233 689999999998 2 36899 99999 666654 6799999974
Q ss_pred chhc-----------cCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 217 SVDY-----------LTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 vl~~-----------l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..++ ......+++++.++|||||.+++.+.
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 3221 11235899999999999999998754
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.9e-11 Score=112.99 Aligned_cols=98 Identities=18% Similarity=0.141 Sum_probs=70.8
Q ss_pred CCCCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCC-CCCCceeEEE
Q 021661 147 TPGVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLP-FEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp-~~~~sfDlVi 213 (309)
.++.+|||+|||.|.. +... ...++|+++|+|+.+++.++++ +.++++|+ ..++ ..+++||+|+
T Consensus 104 ~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da---~~l~~~~~~~FD~Il 180 (456)
T 3m4x_A 104 KPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAP---AELVPHFSGFFDRIV 180 (456)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCH---HHHHHHHTTCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCH---HHhhhhccccCCEEE
Confidence 4588999999998842 2222 2357999999999999877653 66778887 5554 2357899999
Q ss_pred ecc------chhccCC----------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 214 NVV------SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 214 s~~------vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
+.- ++.+-++ ..++|.++.++|||||.|++++..
T Consensus 181 ~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 181 VDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp EECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred ECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 732 2222111 137899999999999999998764
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=101.17 Aligned_cols=91 Identities=15% Similarity=0.157 Sum_probs=70.0
Q ss_pred CCeEEEECCCcchh---ccCCCC-CCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCC-C-CC--C--Cce
Q 021661 149 GVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKL-P-FE--D--NSF 209 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~-~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~l-p-~~--~--~sf 209 (309)
+.+|||||||+|.. +....+ ..+|+++|+|+.+++.+++ +++++++|+ .+. + +. . ++|
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~---~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA---LETLDELLAAGEAGTF 146 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH---HHHHHHHHHTTCTTCE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH---HHHHHHHHhcCCCCCc
Confidence 67999999998843 333334 6799999999999987764 378889987 332 1 11 1 689
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
|+|++... ..+...+++++.++|||||.+++..
T Consensus 147 D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 147 DVAVVDAD---KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp EEEEECSC---STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 99999654 3467889999999999999998864
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.5e-10 Score=95.66 Aligned_cols=83 Identities=8% Similarity=0.111 Sum_probs=62.9
Q ss_pred CCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCC---CCcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 147 TPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~---~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
.++.+|||+|||+|..... ..+..+|+|+|+|+.|++.+++ +++++++|+ ..++ ++||+|+++..++|.
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~---~~~~---~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV---SEIS---GKYDTWIMNPPFGSV 123 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCG---GGCC---CCEEEEEECCCC---
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcH---HHCC---CCeeEEEECCCchhc
Confidence 3478999999999954321 1234579999999999998876 489999999 6664 689999999999988
Q ss_pred CC--HHHHHHHHHhhc
Q 021661 222 TK--PIEVFKEMCQVL 235 (309)
Q Consensus 222 ~d--~~~~l~~i~rvL 235 (309)
.+ ..++++++.++|
T Consensus 124 ~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 124 VKHSDRAFIDKAFETS 139 (200)
T ss_dssp ----CHHHHHHHHHHE
T ss_pred cCchhHHHHHHHHHhc
Confidence 64 357899999998
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.2e-11 Score=106.01 Aligned_cols=147 Identities=7% Similarity=0.000 Sum_probs=87.8
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCC---CCC---CCce
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL---PFE---DNSF 209 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~l---p~~---~~sf 209 (309)
++.+|||+|||+|... ....+..+|+|+|+|+.|++.|+++ ++++++|+ .+. +++ +++|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~~~~~~~f 141 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ---KTLLMDALKEESEIIY 141 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TCSSTTTSTTCCSCCB
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcch---hhhhhhhhhcccCCcc
Confidence 4679999999998533 2223468999999999999987653 78999997 441 343 2689
Q ss_pred eEEEeccchhccC---------------CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhh-----hh--cCCCCchh
Q 021661 210 DVITNVVSVDYLT---------------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI-----WT--STGDADHV 267 (309)
Q Consensus 210 DlVis~~vl~~l~---------------d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~-----w~--~~~~~~h~ 267 (309)
|+|+++..+++.. ....++.+++++|||||.+.+.. ......... |. ..+.....
T Consensus 142 D~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~ 218 (254)
T 2h00_A 142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK---RIIHDSLQLKKRLRWYSCMLGKKCSL 218 (254)
T ss_dssp SEEEECCCCC-------------------------CTTTTHHHHTHHHHHH---HHHHHHHHHGGGBSCEEEEESSTTSH
T ss_pred cEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH---HHHHHHHhcccceEEEEECCCChhHH
Confidence 9999985444332 11246788999999999664321 111111111 11 11222333
Q ss_pred HhHHHHHHHhCCCCCCceeeccCCCCCCCCcEEEEEEe
Q 021661 268 MIVGAYFHYAGGYEPPQAVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 268 ~~~~~~f~~~~Gf~~~~~~~~~~~~~~~~p~~~v~a~k 305 (309)
..+.+.+ +++||+.+++...... .+...+++..
T Consensus 219 ~~~~~~l-~~~Gf~~v~~~~~~~g----~~~~~~~~w~ 251 (254)
T 2h00_A 219 APLKEEL-RIQGVPKVTYTEFCQG----RTMRWALAWS 251 (254)
T ss_dssp HHHHHHH-HHTTCSEEEEEEEEET----TEEEEEEEEE
T ss_pred HHHHHHH-HHcCCCceEEEEEecC----CceEEEEEee
Confidence 4445555 4599998887765432 4556666654
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-10 Score=105.77 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=67.8
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCC-CCCCCCceeEE
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPK-LPFEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~-lp~~~~sfDlV 212 (309)
+.+|||||||+|... ....+..+|+++|+++.+++.|++ +++++++|+ .. ++..+++||+|
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~---~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG---FEFLKNHKNEFDVI 185 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH---HHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChH---HHHHHhcCCCceEE
Confidence 679999999988543 333456799999999999987653 357788887 33 33346789999
Q ss_pred EeccchhccC-C--H--HHHHHHHHhhcccCcEEEEEecC
Q 021661 213 TNVVSVDYLT-K--P--IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 213 is~~vl~~l~-d--~--~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++... +++. . . .++++++.++|||||.+++...+
T Consensus 186 i~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~ 224 (314)
T 2b2c_A 186 ITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGES 224 (314)
T ss_dssp EECCC--------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence 98653 3321 1 1 68999999999999999998643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-10 Score=102.19 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=70.4
Q ss_pred CCeEEEECCCcchhc---cCCCC-CCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCC-CC-----------
Q 021661 149 GVSILDLCSSWVSHF---PPGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPK-LP----------- 203 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~-~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~-lp----------- 203 (309)
+.+|||||||+|... ....+ ..+|+++|+|+.+++.++++ ++++++|+ .. ++
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA---LETLQVLIDSKSAPSW 137 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH---HHHHHHHHHCSSCCGG
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH---HHHHHHHHhhcccccc
Confidence 679999999988532 22333 67999999999999887653 77888887 33 22
Q ss_pred ---CCC--CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 204 ---FED--NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 204 ---~~~--~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+++ ++||+|++.... .+...+++++.++|||||.+++...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDADK---ENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp GTTTCCSTTCEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred cccccCCCCCcCEEEEeCCH---HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 222 789999998654 3567899999999999999998743
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.3e-10 Score=107.49 Aligned_cols=95 Identities=17% Similarity=0.005 Sum_probs=73.6
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC-CCC-CCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK-LPF-EDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~-lp~-~~~sfDlVis 214 (309)
++.+|||+| |+|... ....+..+|+|+|+|+.|++.++++ ++++++|+ .. +|. .+++||+|++
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~---~~~l~~~~~~~fD~Vi~ 247 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDL---RKPLPDYALHKFDTFIT 247 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCT---TSCCCTTTSSCBSEEEE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChh---hhhchhhccCCccEEEE
Confidence 478999999 988543 2223457999999999999987653 78999999 55 663 3568999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCc-EEEEEecC
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSN 247 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG-~lii~~~~ 247 (309)
+..++.. ....+++++.++||||| .+++++..
T Consensus 248 ~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 248 DPPETLE-AIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp CCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred CCCCchH-HHHHHHHHHHHHcccCCeEEEEEEec
Confidence 8655433 25899999999999999 55777665
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.7e-10 Score=104.88 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=69.5
Q ss_pred CCCeEEEECCCcchhcc---CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSHFP---PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~---~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
++.+|||+|||+|.... ...+.++|+|+|+|+.|++.|+++ +++.++|+ .+++.++++||+|+++
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~---~~~~~~~~~fD~Ii~n 293 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDA---TQLSQYVDSVDFAISN 293 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCG---GGGGGTCSCEEEEEEE
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hhCCcccCCcCEEEEC
Confidence 47899999999996432 223345899999999999987753 78999999 7888777899999997
Q ss_pred cchhc-------cCC-HHHHHHHHHhhcccCcEEEEEec
Q 021661 216 VSVDY-------LTK-PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 216 ~vl~~-------l~d-~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+.. +.+ ..++++++.++| ||.+++.++
T Consensus 294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~ 330 (373)
T 3tm4_A 294 LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT 330 (373)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC
Confidence 54332 112 267889999999 454444344
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-10 Score=100.29 Aligned_cols=100 Identities=11% Similarity=-0.022 Sum_probs=74.5
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCC
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPF 204 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~ 204 (309)
.+.+++++ +.+|||||||+|.. +....+..+|+|+|+++.+++.|+++ +++.++|+ .+...
T Consensus 14 ~i~~~v~~----g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~---l~~~~ 86 (230)
T 3lec_A 14 KVANYVPK----GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANG---LSAFE 86 (230)
T ss_dssp HHHTTSCT----TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG---GGGCC
T ss_pred HHHHhCCC----CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch---hhccc
Confidence 34455553 78999999999943 23334556899999999999988764 78999998 44443
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+++.||+|+...+.-. -...++.+..+.|+++|.|+++-
T Consensus 87 ~~~~~D~IviaGmGg~--lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 87 EADNIDTITICGMGGR--LIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp GGGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEE
T ss_pred cccccCEEEEeCCchH--HHHHHHHHHHHHhCcCCEEEEEC
Confidence 4447999887654432 24678899999999999999974
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-09 Score=101.44 Aligned_cols=107 Identities=16% Similarity=0.232 Sum_probs=76.7
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhccCCC----CCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCcee
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY----KQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFD 210 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~----~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfD 210 (309)
.+.+.+.+.. .++.+|||+|||+|..+..+. +..+++|+|+++.+++.| .+++++++|+ ...+ ..++||
T Consensus 28 ~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-~~~~~~~~D~---~~~~-~~~~fD 100 (421)
T 2ih2_A 28 VDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-PWAEGILADF---LLWE-PGEAFD 100 (421)
T ss_dssp HHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-TTEEEEESCG---GGCC-CSSCEE
T ss_pred HHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-CCCcEEeCCh---hhcC-ccCCCC
Confidence 4444555542 346699999999996543322 467999999999999988 5689999998 4443 346899
Q ss_pred EEEeccchh---c-------cCC-------------------HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 211 VITNVVSVD---Y-------LTK-------------------PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 211 lVis~~vl~---~-------l~d-------------------~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+|+++--.. . +.+ ...+++.+.++|||||.+++.+++.
T Consensus 101 ~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 101 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred EEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 999962111 1 111 1267999999999999998887753
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.99 E-value=3e-10 Score=100.47 Aligned_cols=100 Identities=8% Similarity=-0.079 Sum_probs=73.7
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCC
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPF 204 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~ 204 (309)
.+.+++++ +.+|||||||+|.. +....+..+|+|+|+++.+++.|+++ +++.++|+ .....
T Consensus 14 ~i~~~v~~----g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~---l~~~~ 86 (244)
T 3gnl_A 14 KVASYITK----NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNG---LAVIE 86 (244)
T ss_dssp HHHTTCCS----SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSG---GGGCC
T ss_pred HHHHhCCC----CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecch---hhccC
Confidence 34455553 78999999999943 23334556899999999999988764 68899998 44333
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
++++||+|++..+.-. -...+|.+..+.|+++|.|+++-
T Consensus 87 ~~~~~D~IviagmGg~--lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 87 KKDAIDTIVIAGMGGT--LIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp GGGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ccccccEEEEeCCchH--HHHHHHHHHHHHhCCCCEEEEEc
Confidence 3346999987654331 24578899999999999999974
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-10 Score=99.23 Aligned_cols=101 Identities=12% Similarity=-0.003 Sum_probs=73.8
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCC
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPF 204 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~ 204 (309)
.+.+++++ +.+|||||||+|.. +....+..+|+|+|+++.+++.|+++ +++.++|+. ..++.
T Consensus 8 ~l~~~v~~----g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l--~~l~~ 81 (225)
T 3kr9_A 8 LVASFVSQ----GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGL--AAFEE 81 (225)
T ss_dssp HHHTTSCT----TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGG--GGCCG
T ss_pred HHHHhCCC----CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchh--hhccc
Confidence 34455543 78999999999943 33344567999999999999988764 678999972 23332
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+.||+|+...+--.+ ...++.+....|+|+|.++++-.
T Consensus 82 -~~~~D~IviaG~Gg~~--i~~Il~~~~~~L~~~~~lVlq~~ 120 (225)
T 3kr9_A 82 -TDQVSVITIAGMGGRL--IARILEEGLGKLANVERLILQPN 120 (225)
T ss_dssp -GGCCCEEEEEEECHHH--HHHHHHHTGGGCTTCCEEEEEES
T ss_pred -CcCCCEEEEcCCChHH--HHHHHHHHHHHhCCCCEEEEECC
Confidence 2269999876543321 56889999999999999999743
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5e-10 Score=101.22 Aligned_cols=94 Identities=12% Similarity=0.111 Sum_probs=68.7
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------------CCcEEEecCCCCCC-CCCCC
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------------LTEYVVQDLNLNPK-LPFED 206 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------------~i~~~~~D~~~~~~-lp~~~ 206 (309)
+.+|||||||+|... ... +..+|+++|+++.+++.|++ +++++++|+ .. ++. +
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~---~~~l~~-~ 150 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG---FEFIKN-N 150 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH---HHHHHH-C
T ss_pred CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECch---HHHhcc-c
Confidence 679999999988543 233 56799999999999987542 367788887 33 222 5
Q ss_pred CceeEEEeccchhccC--C--HHHHHHHHHhhcccCcEEEEEecC
Q 021661 207 NSFDVITNVVSVDYLT--K--PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 207 ~sfDlVis~~vl~~l~--d--~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++||+|++......-+ . ..++++++.++|||||.+++...+
T Consensus 151 ~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~ 195 (281)
T 1mjf_A 151 RGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS 195 (281)
T ss_dssp CCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence 7899999865432111 1 268999999999999999987543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.95 E-value=5e-09 Score=89.40 Aligned_cols=91 Identities=7% Similarity=0.036 Sum_probs=68.2
Q ss_pred CCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||+|||+|...... ....+|+|+|+|+.+++.+++ +++++++|+ .+++ ++||+|+++..
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~~---~~~D~v~~~~p 121 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV---SEFN---SRVDIVIMNPP 121 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG---GGCC---CCCSEEEECCC
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECch---HHcC---CCCCEEEEcCC
Confidence 34789999999999543221 223489999999999998765 368999999 6654 47999999988
Q ss_pred hhccC--CHHHHHHHHHhhcccCcEEEEEe
Q 021661 218 VDYLT--KPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 218 l~~l~--d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+++.. ....+++++.++| ||.+++.+
T Consensus 122 ~~~~~~~~~~~~l~~~~~~l--~~~~~~~~ 149 (207)
T 1wy7_A 122 FGSQRKHADRPFLLKAFEIS--DVVYSIHL 149 (207)
T ss_dssp CSSSSTTTTHHHHHHHHHHC--SEEEEEEE
T ss_pred CccccCCchHHHHHHHHHhc--CcEEEEEe
Confidence 77664 3468899999998 56555443
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-10 Score=115.20 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=74.4
Q ss_pred CCeEEEECCCcchhccC-C-CCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCC-CCCCCCceeEEEec
Q 021661 149 GVSILDLCSSWVSHFPP-G-YKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPK-LPFEDNSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~-~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~-lp~~~~sfDlVis~ 215 (309)
+.+|||+|||+|..... + ....+|+++|+|+.+++.++++ ++++++|+ .+ ++...++||+|++.
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~---~~~l~~~~~~fD~Ii~D 616 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADC---LAWLREANEQFDLIFID 616 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCH---HHHHHHCCCCEEEEEEC
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCH---HHHHHhcCCCccEEEEC
Confidence 78999999999954322 2 2234799999999999987653 67899998 43 44445789999985
Q ss_pred c-----------chhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 216 V-----------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 216 ~-----------vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
- +++...+..+++.++.++|||||.|+++....
T Consensus 617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 3 33444567889999999999999999887653
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-10 Score=102.76 Aligned_cols=90 Identities=16% Similarity=0.083 Sum_probs=62.6
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||||||+|..... +..+.+|+|+|+|+.|++.+++ +++++++|+ .+++++ +||+|+++.
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~---~~~~~~--~fD~vv~nl 101 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV---LKTDLP--FFDTCVANL 101 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT---TTSCCC--CCSEEEEEC
T ss_pred CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce---ecccch--hhcEEEEec
Confidence 4578999999999964322 2225699999999999986553 378999999 666654 699999974
Q ss_pred c-----------hhccCCHHHHH----HHH--HhhcccCcEE
Q 021661 217 S-----------VDYLTKPIEVF----KEM--CQVLKPGGLA 241 (309)
Q Consensus 217 v-----------l~~l~d~~~~l----~~i--~rvLkpGG~l 241 (309)
. ++|.++...++ +|+ +++|||||.+
T Consensus 102 py~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~ 143 (285)
T 1zq9_A 102 PYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL 143 (285)
T ss_dssp CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred CcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence 3 34433332111 333 4699999965
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.8e-10 Score=106.10 Aligned_cols=97 Identities=13% Similarity=0.082 Sum_probs=69.9
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCC-CCCCCceeEEEeccch
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKL-PFEDNSFDVITNVVSV 218 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~l-p~~~~sfDlVis~~vl 218 (309)
++.+|||+|||+|.... .+..+..|+++|+|+.|++.++++ ..+.++|+ .+. +...+.||+|++.--.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~---~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEA---LPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCH---HHHHHTCCCCEEEEEECCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccH---HHHHHHhcCCCCEEEECCCc
Confidence 47899999999985432 222356799999999999988775 35778887 332 2213349999986422
Q ss_pred ---------hccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 219 ---------DYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 219 ---------~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
....+..+++..+.++|||||.+++...+
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 11234578999999999999998866554
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-09 Score=101.75 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=74.1
Q ss_pred CCCeEEEECCCcchhccCC---CC-----CCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEE
Q 021661 148 PGVSILDLCSSWVSHFPPG---YK-----QDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~---~~-----~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
++.+|||+|||+|..+... .+ ..+++|+|+++.+++.|+.+ +.++++|. .. +...++||+|
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~---l~-~~~~~~fD~I 205 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDG---LA-NLLVDPVDVV 205 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCT---TS-CCCCCCEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCC---CC-ccccCCccEE
Confidence 4689999999999654322 11 26899999999999987763 67889997 33 2345689999
Q ss_pred EeccchhccCCH------------------HHHHHHHHhhcccCcEEEEEecCc
Q 021661 213 TNVVSVDYLTKP------------------IEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 213 is~~vl~~l~d~------------------~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+++..+.++++. ..+++.+.+.|||||.+++.+++.
T Consensus 206 i~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 206 ISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp EEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred EECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 999876665432 258999999999999998887754
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.1e-10 Score=106.34 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=70.4
Q ss_pred CCeEEEECCCcchhccC-CC-CCCeEEEEeCCHHHHhhCCC----------CCcEEEecCCCCCC-CCC---CCCceeEE
Q 021661 149 GVSILDLCSSWVSHFPP-GY-KQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPK-LPF---EDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~-~~~~v~giD~S~~~l~~a~~----------~i~~~~~D~~~~~~-lp~---~~~sfDlV 212 (309)
+.+|||+|||+|..... +. ...+|+|+|+|+.|++.|++ +++++++|+ .+ ++. ..++||+|
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~---~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV---FDYFKYARRHHLTYDII 289 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH---HHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCH---HHHHHHHHHhCCCccEE
Confidence 78999999999964322 22 23489999999999987664 367899998 43 221 24589999
Q ss_pred Eeccch-----hcc----CCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 213 TNVVSV-----DYL----TKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 213 is~~vl-----~~l----~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
++.--. .++ .+..+++.++.++|||||.++++.....
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 985322 223 3445678888999999999999876543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.89 E-value=2.7e-11 Score=107.23 Aligned_cols=94 Identities=6% Similarity=0.008 Sum_probs=68.3
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC------CcEEEecCCCCCCCCCCC-CceeEEEecc--
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFED-NSFDVITNVV-- 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~------i~~~~~D~~~~~~lp~~~-~sfDlVis~~-- 216 (309)
.++.+|||||||+|..... +..+.+|+|+|+|+.|++.++++ ++++++|+ .++++++ ++| .|+++.
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~---~~~~~~~~~~f-~vv~n~Py 103 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI---LQFQFPNKQRY-KIVGNIPY 103 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCC---TTTTCCCSSEE-EEEEECCS
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECCh---hhcCcccCCCc-EEEEeCCc
Confidence 4578999999999854322 22247999999999999988764 67889999 7777663 678 666652
Q ss_pred ---------chhccCCHHHHH----HHHHhhcccCcEEEEE
Q 021661 217 ---------SVDYLTKPIEVF----KEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 ---------vl~~l~d~~~~l----~~i~rvLkpGG~lii~ 244 (309)
++.|..+...++ +.+.|+|||||.+.+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~ 144 (245)
T 1yub_A 104 HLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLL 144 (245)
T ss_dssp SSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHH
T ss_pred cccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhh
Confidence 233334455566 7799999999976554
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.87 E-value=4.4e-10 Score=106.36 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=73.0
Q ss_pred CCCeEEEECCCcchhccC-C-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCC----CCCceeEE
Q 021661 148 PGVSILDLCSSWVSHFPP-G-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPF----EDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~----~~~sfDlV 212 (309)
++.+|||+|||+|..... + ....+|+|+|+|+.+++.+++ +++++++|+ .+... ..++||+|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~---~~~~~~~~~~~~~fD~V 293 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSA---FEEMEKLQKKGEKFDIV 293 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH---HHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCH---HHHHHHHHhhCCCCCEE
Confidence 478999999999954322 1 224599999999999987765 367899998 44321 25689999
Q ss_pred Eecc---------chhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 213 TNVV---------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 213 is~~---------vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++.. +.++..+...++.++.++|||||.+++...+.
T Consensus 294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 9853 23333567789999999999999988876654
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-10 Score=107.09 Aligned_cols=98 Identities=18% Similarity=0.126 Sum_probs=72.9
Q ss_pred CCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCC----CCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPF----EDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~----~~~sfDlVis 214 (309)
++.+|||+|||+|..... +....+|+|+|+|+.+++.++++ ++++++|+ .+... .+++||+|++
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~---~~~~~~~~~~~~~fD~Ii~ 285 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA---FDLLRRLEKEGERFDLVVL 285 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCH---HHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCH---HHHHHHHHhcCCCeeEEEE
Confidence 378999999999854322 11256899999999999987764 68999998 44321 2568999998
Q ss_pred cc---------chhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VV---------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~---------vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.- +.....+...++.++.++|||||.++++....
T Consensus 286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 53 22223456789999999999999999887653
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.7e-09 Score=98.86 Aligned_cols=89 Identities=7% Similarity=0.036 Sum_probs=68.6
Q ss_pred CCCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 148 PGVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
++.+|||+|||+|.....+....+|+|+|+|+.+++.+++ +++++++|+ .+.. ++||+|++...-
T Consensus 195 ~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~---~~~~---~~fD~Vi~dpP~ 268 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDV---REVD---VKGNRVIMNLPK 268 (336)
T ss_dssp TTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCG---GGCC---CCEEEEEECCTT
T ss_pred CCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCh---HHhc---CCCcEEEECCcH
Confidence 3789999999999543224456799999999999987765 378999998 5544 789999986321
Q ss_pred hccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 219 DYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 219 ~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
....++.++.++|+|||.+++...
T Consensus 269 ----~~~~~l~~~~~~L~~gG~l~~~~~ 292 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEEGGVIHYYTI 292 (336)
T ss_dssp ----TGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ----hHHHHHHHHHHHcCCCCEEEEEEe
Confidence 223889999999999998877544
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.2e-09 Score=101.51 Aligned_cols=97 Identities=19% Similarity=0.131 Sum_probs=72.0
Q ss_pred CCeEEEECCCcchhccC-CCC-CCeEEEEeCCHHHHhhCCC----------CCcEEEecCCCCCCCCC----CCCceeEE
Q 021661 149 GVSILDLCSSWVSHFPP-GYK-QDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNPKLPF----EDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~~-~~~v~giD~S~~~l~~a~~----------~i~~~~~D~~~~~~lp~----~~~sfDlV 212 (309)
+.+|||+|||+|..... +.. ..+|+|+|+|+.+++.|++ +++++++|+ .+... ..++||+|
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~---~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV---FKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCH---HHHHHHHHHTTCCEEEE
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCH---HHHHHHHHhcCCCCCEE
Confidence 78999999998854322 222 4599999999999987653 467899998 44321 14689999
Q ss_pred Eecc---------chhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 213 TNVV---------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 213 is~~---------vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++.- +.+...+...++.++.++|||||.++++....
T Consensus 298 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp EECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9863 22333567889999999999999999887653
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.2e-09 Score=95.01 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=68.2
Q ss_pred CCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||+|||+|..... .....+|+++|+|+.+++.+++| ++++++|+ ..++ ..+.||.|+++.
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~---~~~~-~~~~~D~Vi~~~ 200 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---RDFP-GENIADRILMGY 200 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---TTCC-CCSCEEEEEECC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcH---HHhc-cccCCCEEEECC
Confidence 389999999998854322 23346899999999999887654 67889998 6665 356799999764
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+....+|..+.++|||||.+.+-
T Consensus 201 ----p~~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 201 ----VVRTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp ----CSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred ----CCcHHHHHHHHHHHcCCCCEEEEE
Confidence 234457888899999999987653
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-08 Score=96.67 Aligned_cols=111 Identities=17% Similarity=0.199 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCC
Q 021661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLN 199 (309)
Q Consensus 129 ~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~ 199 (309)
.....+.+.+.+.+.. .++.+|||+|||+|... ..+....+|+|+|+|+.|++.|++ +++|+++|+...
T Consensus 269 ~~~e~l~~~~~~~l~~--~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~ 346 (433)
T 1uwv_A 269 GVNQKMVARALEWLDV--QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED 346 (433)
T ss_dssp HHHHHHHHHHHHHHTC--CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSC
T ss_pred HHHHHHHHHHHHhhcC--CCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHH
Confidence 3344455555555542 34689999999998543 222336799999999999998765 378999999310
Q ss_pred -CCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 200 -PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 200 -~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
..+++.+++||+|+++---... .++++.+.+ ++|++.++++.
T Consensus 347 l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 347 VTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEES
T ss_pred hhhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEEC
Confidence 1144566789999986432222 245555543 78999888874
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=93.01 Aligned_cols=97 Identities=12% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCCCeEEEECCCcchhc---cCC-CCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCC---CceeE
Q 021661 147 TPGVSILDLCSSWVSHF---PPG-YKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFED---NSFDV 211 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~-~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~---~sfDl 211 (309)
.++.+|||+|||.|... ... .+.++|+++|+++.+++.+++ +++++++|+ ..++... ++||.
T Consensus 101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~---~~~~~~~~~~~~fD~ 177 (309)
T 2b9e_A 101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDF---LAVSPSDPRYHEVHY 177 (309)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG---GGSCTTCGGGTTEEE
T ss_pred CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCh---HhcCccccccCCCCE
Confidence 45889999999988432 222 345799999999999987654 378899998 5554321 57999
Q ss_pred EEec------cchhccC-----------CH-------HHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNV------VSVDYLT-----------KP-------IEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~------~vl~~l~-----------d~-------~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|++. .++..-+ +. .++|+.+.++|+ ||.++.++..
T Consensus 178 Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 178 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred EEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 9962 2332211 11 256788888887 9999888765
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-08 Score=92.64 Aligned_cols=88 Identities=13% Similarity=0.071 Sum_probs=58.9
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|.... .+..+.+|+|+|+|+.|++.+++ +++++++|+ ..+++ .+||+|+++..
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~---~~~~~--~~~D~Vv~n~p 115 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDA---IKTVF--PKFDVCTANIP 115 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----C---CSSCC--CCCSEEEEECC
T ss_pred CCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECch---hhCCc--ccCCEEEEcCC
Confidence 457899999999985432 22236799999999999987654 377889998 66664 47999999765
Q ss_pred hhccCCH-HHHH---------------HHHHhhcccCc
Q 021661 218 VDYLTKP-IEVF---------------KEMCQVLKPGG 239 (309)
Q Consensus 218 l~~l~d~-~~~l---------------~~i~rvLkpGG 239 (309)
.+..... ...+ +.+.|+++|+|
T Consensus 116 y~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 116 YKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp GGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred cccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 5433211 2333 44678888877
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.72 E-value=9e-09 Score=98.85 Aligned_cols=97 Identities=16% Similarity=0.191 Sum_probs=72.0
Q ss_pred CCCCeEEEECCCcchhccCCC----------------CCCeEEEEeCCHHHHhhCCC----------CCcEEEecCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPPGY----------------KQDRIVGMGMNEEELKRNPV----------LTEYVVQDLNLNP 200 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~~----------------~~~~v~giD~S~~~l~~a~~----------~i~~~~~D~~~~~ 200 (309)
.++.+|||.|||+|..+..+. ...+++|+|+++.+++.|+. ..++.++|. .
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~---l 246 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDS---L 246 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCT---T
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCC---C
Confidence 457799999999996543221 24689999999999987654 357889998 4
Q ss_pred CCCCCCCceeEEEeccchhccCC-----------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 201 KLPFEDNSFDVITNVVSVDYLTK-----------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 201 ~lp~~~~sfDlVis~~vl~~l~d-----------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
..+.. ++||+|+++-.+.+... ...+++.+.+.|||||.+++-+++
T Consensus 247 ~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 247 EKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp TSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 44433 37999999865554321 147899999999999988877764
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.3e-08 Score=94.45 Aligned_cols=91 Identities=21% Similarity=0.176 Sum_probs=66.2
Q ss_pred CCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 148 PGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
++.+|||+|||+|.... .+....+|+|+|+|+.|++.|+++ ++++++|+ .++.. . +||+|++...-.
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~---~~~~~-~-~fD~Vv~dPPr~ 364 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASD---REVSV-K-GFDTVIVDPPRA 364 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCT---TTCCC-T-TCSEEEECCCTT
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECCh---HHcCc-c-CCCEEEEcCCcc
Confidence 37899999999995432 223356999999999999988764 67999999 55532 2 799999965422
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+ ...+++.+. .|+|||.++++..
T Consensus 365 g~--~~~~~~~l~-~l~p~givyvsc~ 388 (425)
T 2jjq_A 365 GL--HPRLVKRLN-REKPGVIVYVSCN 388 (425)
T ss_dssp CS--CHHHHHHHH-HHCCSEEEEEESC
T ss_pred ch--HHHHHHHHH-hcCCCcEEEEECC
Confidence 11 234666665 5999999998753
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4e-09 Score=93.32 Aligned_cols=74 Identities=9% Similarity=0.051 Sum_probs=51.4
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCC-C
Q 021661 136 KYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFED-N 207 (309)
Q Consensus 136 ~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~-~ 207 (309)
+.+.+.+.. .++.+|||||||+|..... +..+.+|+|+|+|+.|++.+++ +++++++|+ .++++++ .
T Consensus 20 ~~i~~~~~~--~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~---~~~~~~~~~ 94 (244)
T 1qam_A 20 DKIMTNIRL--NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDI---LQFKFPKNQ 94 (244)
T ss_dssp HHHHTTCCC--CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCG---GGCCCCSSC
T ss_pred HHHHHhCCC--CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChH---HhCCcccCC
Confidence 334444442 4578999999999964322 2224799999999999987654 478999999 7777664 4
Q ss_pred ceeEEEec
Q 021661 208 SFDVITNV 215 (309)
Q Consensus 208 sfDlVis~ 215 (309)
.|+ |+++
T Consensus 95 ~~~-vv~n 101 (244)
T 1qam_A 95 SYK-IFGN 101 (244)
T ss_dssp CCE-EEEE
T ss_pred CeE-EEEe
Confidence 564 5544
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.65 E-value=9.2e-08 Score=89.65 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=69.3
Q ss_pred CCeEEEECCCcchhcc------------------CCCCCCeEEEEeCCHHHH-------hhCCC-------------CCc
Q 021661 149 GVSILDLCSSWVSHFP------------------PGYKQDRIVGMGMNEEEL-------KRNPV-------------LTE 190 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~------------------~~~~~~~v~giD~S~~~l-------~~a~~-------------~i~ 190 (309)
..+|+|+|||+|.... ...|..+|...|+..+.. ...++ .--
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 5899999999883211 012566899999887663 22221 123
Q ss_pred EEEecCCCCCCCCCCCCceeEEEeccchhccC--------------------------------------CHHHHHHHHH
Q 021661 191 YVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT--------------------------------------KPIEVFKEMC 232 (309)
Q Consensus 191 ~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~--------------------------------------d~~~~l~~i~ 232 (309)
|+.+.......-.+++++||+|+|+.+|||+. |...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555422133457899999999999999996 3345788999
Q ss_pred hhcccCcEEEEEecC
Q 021661 233 QVLKPGGLAIVSFSN 247 (309)
Q Consensus 233 rvLkpGG~lii~~~~ 247 (309)
+.|+|||.+++++..
T Consensus 213 ~eL~pGG~mvl~~~g 227 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLG 227 (374)
T ss_dssp HHEEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEec
Confidence 999999999998764
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.3e-07 Score=82.79 Aligned_cols=111 Identities=10% Similarity=0.009 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPK 201 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~ 201 (309)
..+|.++..+.+ ..++.+|||||||.|... ....+...|+|+|++..+...... ++..++.++ +.
T Consensus 60 A~KL~ei~ek~~---l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~---dv 133 (277)
T 3evf_A 60 TAKLRWFHERGY---VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKT---DI 133 (277)
T ss_dssp HHHHHHHHHTTS---SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSC---CT
T ss_pred HHHHHHHHHhCC---CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccc---ee
Confidence 345566555522 356789999999988543 233344578899998655222221 345566666 44
Q ss_pred CCCCCCceeEEEeccchh----ccCCHH--HHHHHHHhhcccC-cEEEEEecC
Q 021661 202 LPFEDNSFDVITNVVSVD----YLTKPI--EVFKEMCQVLKPG-GLAIVSFSN 247 (309)
Q Consensus 202 lp~~~~sfDlVis~~vl~----~l~d~~--~~l~~i~rvLkpG-G~lii~~~~ 247 (309)
..++++.||+|+|..+.+ ++++.. ..|+.+.++|||| |.+++.+-.
T Consensus 134 ~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 134 HRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp TTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred hhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 566778899999987555 222211 3578889999999 999998766
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.3e-08 Score=92.48 Aligned_cols=77 Identities=19% Similarity=0.219 Sum_probs=57.1
Q ss_pred CeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccchh-cc---CCHHHHHHHHHhhcc
Q 021661 170 DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD-YL---TKPIEVFKEMCQVLK 236 (309)
Q Consensus 170 ~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~-~l---~d~~~~l~~i~rvLk 236 (309)
.+|+|+|+++.|++.|+++ +++.++|+ .+++.+ ++||+|+++--.. .+ .+...+.+++.++||
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~---~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk 333 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDA---TQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFR 333 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCG---GGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHh
Confidence 5799999999999988764 78999999 666654 5799999975432 22 244567777888888
Q ss_pred c--CcEEEEEecCcch
Q 021661 237 P--GGLAIVSFSNRCF 250 (309)
Q Consensus 237 p--GG~lii~~~~~~~ 250 (309)
+ ||.+.+-+++..+
T Consensus 334 ~~~g~~~~iit~~~~l 349 (385)
T 3ldu_A 334 KLKNWSYYLITSYEDF 349 (385)
T ss_dssp TSBSCEEEEEESCTTH
T ss_pred hCCCCEEEEEECCHHH
Confidence 7 8877666666543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.8e-08 Score=92.36 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=55.4
Q ss_pred CeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccchh-cc---CCHHHHHHHHHhhcc
Q 021661 170 DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD-YL---TKPIEVFKEMCQVLK 236 (309)
Q Consensus 170 ~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~-~l---~d~~~~l~~i~rvLk 236 (309)
.+|+|+|+|+.|++.|+++ ++++++|+ .+++.+ ++||+|+++--.. .+ .+...+.+++.++||
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~---~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk 339 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQV---ADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYK 339 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCG---GGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---HhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHh
Confidence 4699999999999987753 78999999 677654 4799999983221 12 234556666777777
Q ss_pred c--CcEEEEEecCcch
Q 021661 237 P--GGLAIVSFSNRCF 250 (309)
Q Consensus 237 p--GG~lii~~~~~~~ 250 (309)
+ ||.+++-+++..+
T Consensus 340 ~~~g~~~~iit~~~~l 355 (393)
T 3k0b_A 340 RMPTWSVYVLTSYELF 355 (393)
T ss_dssp TCTTCEEEEEECCTTH
T ss_pred cCCCCEEEEEECCHHH
Confidence 6 8877766665543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.3e-08 Score=88.04 Aligned_cols=70 Identities=9% Similarity=0.033 Sum_probs=55.4
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
.++.+|||||||+|..... +....+|+|+|+++.|++.+++ +++++++|+ ..+++++.+||+|+++...+
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~---l~~~~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDA---LKVDLNKLDFNKVVANLPYQ 125 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCT---TTSCGGGSCCSEEEEECCGG
T ss_pred CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECch---hhCCcccCCccEEEEeCccc
Confidence 4578999999999954322 2226799999999999988764 478999999 78888777899999885543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=8.4e-08 Score=89.85 Aligned_cols=109 Identities=7% Similarity=-0.006 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNP 200 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~ 200 (309)
....+.+.+.+.+.. .+.+|||+|||+|... ..+....+|+|+|+|+.|++.|++ +++++++|+ .
T Consensus 198 ~~~~l~~~~~~~~~~---~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~---~ 271 (369)
T 3bt7_A 198 MNIQMLEWALDVTKG---SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAA---E 271 (369)
T ss_dssp HHHHHHHHHHHHTTT---CCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCS---H
T ss_pred HHHHHHHHHHHHhhc---CCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCH---H
Confidence 345556666666653 2578999999998543 333345699999999999998765 368899998 4
Q ss_pred CC-C-CCC--------------CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 201 KL-P-FED--------------NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 201 ~l-p-~~~--------------~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
++ + +.. ++||+|++.---. .+..++.+.|+++|.+++...++..
T Consensus 272 ~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~------g~~~~~~~~l~~~g~ivyvsc~p~t 331 (369)
T 3bt7_A 272 EFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS------GLDSETEKMVQAYPRILYISCNPET 331 (369)
T ss_dssp HHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT------CCCHHHHHHHTTSSEEEEEESCHHH
T ss_pred HHHHHHhhccccccccccccccCCCCEEEECcCcc------ccHHHHHHHHhCCCEEEEEECCHHH
Confidence 33 1 111 3799998743111 2345677788899977766666543
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.47 E-value=4.4e-07 Score=84.51 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=71.1
Q ss_pred CCCeEEEECCCcchhc----cC---------------CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCC
Q 021661 148 PGVSILDLCSSWVSHF----PP---------------GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLN 199 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~----~~---------------~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~ 199 (309)
...+|+|+||++|... .. ..|..+|+..|+..++....-+ ..-|+.+.....
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3579999999877221 11 2345689999998876653211 224666665322
Q ss_pred CCCCCCCCceeEEEeccchhccCCH---------------------------------HHHHHHHHhhcccCcEEEEEec
Q 021661 200 PKLPFEDNSFDVITNVVSVDYLTKP---------------------------------IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 200 ~~lp~~~~sfDlVis~~vl~~l~d~---------------------------------~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..-.++++++|+|+|+.+|||+.+. ..+|+..++.|+|||.+++++.
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 3456889999999999999998642 2358889999999999999875
Q ss_pred C
Q 021661 247 N 247 (309)
Q Consensus 247 ~ 247 (309)
.
T Consensus 211 g 211 (359)
T 1m6e_X 211 G 211 (359)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-07 Score=89.77 Aligned_cols=77 Identities=12% Similarity=0.080 Sum_probs=56.9
Q ss_pred CeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEeccchh-ccC---CHHHHHHHHHhhcc
Q 021661 170 DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVD-YLT---KPIEVFKEMCQVLK 236 (309)
Q Consensus 170 ~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~-~l~---d~~~~l~~i~rvLk 236 (309)
.+|+|+|+|+.|++.|++| ++++++|+ .+++.+ ++||+|+++--.. .+. +...+.+++.+.||
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~---~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk 332 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRL---QDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFA 332 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCG---GGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---HHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHh
Confidence 4699999999999988764 68999999 677654 4799999984321 232 34567777778887
Q ss_pred c--CcEEEEEecCcch
Q 021661 237 P--GGLAIVSFSNRCF 250 (309)
Q Consensus 237 p--GG~lii~~~~~~~ 250 (309)
+ ||.+.+-+++..+
T Consensus 333 ~~~g~~~~iit~~~~l 348 (384)
T 3ldg_A 333 PLKTWSQFILTNDTDF 348 (384)
T ss_dssp TCTTSEEEEEESCTTH
T ss_pred hCCCcEEEEEECCHHH
Confidence 7 8887776666543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.39 E-value=3.1e-07 Score=81.71 Aligned_cols=66 Identities=6% Similarity=0.019 Sum_probs=49.3
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCC----CCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFE----DNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~----~~sfDlVis~ 215 (309)
.++.+|||||||+|... ..+..+.+|+|+|++++|++.+++ +++++++|+ .+++++ +++|| |+++
T Consensus 28 ~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 28 QKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDA---LQFDFSSVKTDKPLR-VVGN 103 (255)
T ss_dssp CTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCT---TTCCGGGSCCSSCEE-EEEE
T ss_pred CCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcch---HhCCHHHhccCCCeE-EEec
Confidence 45789999999999543 223335799999999999987654 478999999 777654 35688 5655
Q ss_pred c
Q 021661 216 V 216 (309)
Q Consensus 216 ~ 216 (309)
.
T Consensus 104 l 104 (255)
T 3tqs_A 104 L 104 (255)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-07 Score=93.12 Aligned_cols=98 Identities=9% Similarity=0.094 Sum_probs=69.9
Q ss_pred CCCCeEEEECCCcchhccCC-------C--------------CCCeEEEEeCCHHHHhhCCCC-------------CcEE
Q 021661 147 TPGVSILDLCSSWVSHFPPG-------Y--------------KQDRIVGMGMNEEELKRNPVL-------------TEYV 192 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-------~--------------~~~~v~giD~S~~~l~~a~~~-------------i~~~ 192 (309)
.++.+|||.|||+|.++..+ . ....++|+|+++.+++.|+.+ ..+.
T Consensus 168 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~ 247 (541)
T 2ar0_A 168 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR 247 (541)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeE
Confidence 45789999999999654221 1 124799999999999877532 4678
Q ss_pred EecCCCCCCCC-CCCCceeEEEeccchhccCC--------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 193 VQDLNLNPKLP-FEDNSFDVITNVVSVDYLTK--------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 193 ~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~d--------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++|. ...+ ...++||+|+++--+..... ...++..+.+.|||||.+++-+++
T Consensus 248 ~gDt---L~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 248 LGNT---LGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp ESCT---TSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred eCCC---cccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 8887 3322 34568999999854333211 247999999999999988777665
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.2e-07 Score=85.35 Aligned_cols=100 Identities=9% Similarity=0.009 Sum_probs=68.6
Q ss_pred CCeEEEECCCcchh-----------ccCC---------CCCCeEEEEeCC-----------HHHHhhCCC------CCcE
Q 021661 149 GVSILDLCSSWVSH-----------FPPG---------YKQDRIVGMGMN-----------EEELKRNPV------LTEY 191 (309)
Q Consensus 149 ~~~ILDiGcG~g~~-----------~~~~---------~~~~~v~giD~S-----------~~~l~~a~~------~i~~ 191 (309)
..+|+|+||++|.. +... .|..+|+..|+. +.+.+..++ .--|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 57999999998821 1111 244588999988 444432211 2356
Q ss_pred EEecCCCCCCCCCCCCceeEEEeccchhccCCHH---------------------------------------HHHHHHH
Q 021661 192 VVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPI---------------------------------------EVFKEMC 232 (309)
Q Consensus 192 ~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~---------------------------------------~~l~~i~ 232 (309)
+.+.......-.++++++|+|+|+.+|||+.+.. .+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776632234568899999999999999986532 1266668
Q ss_pred hhcccCcEEEEEecCc
Q 021661 233 QVLKPGGLAIVSFSNR 248 (309)
Q Consensus 233 rvLkpGG~lii~~~~~ 248 (309)
+.|+|||.+++++..+
T Consensus 213 ~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 213 EELISRGRMLLTFICK 228 (384)
T ss_dssp HHEEEEEEEEEEEECC
T ss_pred HHhccCCeEEEEEecC
Confidence 9999999999998754
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=6.7e-07 Score=83.37 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=66.4
Q ss_pred CCCCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCC--------------CCcEEEecCCCCCCCC-CCCCc
Q 021661 147 TPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPV--------------LTEYVVQDLNLNPKLP-FEDNS 208 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~--------------~i~~~~~D~~~~~~lp-~~~~s 208 (309)
.++.+|||+|+|.|. .+......+.|+++|+|+.-++..++ ++.....|. ..++ ...+.
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~---~~~~~~~~~~ 223 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDG---RKWGELEGDT 223 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCG---GGHHHHSTTC
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCch---hhcchhcccc
Confidence 568999999998662 33344455689999999876654322 255666776 4443 34578
Q ss_pred eeEEEe----cc----chhccCC----------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 209 FDVITN----VV----SVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 209 fDlVis----~~----vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
||.|++ +. ++..-++ ..++|..+.+.|||||.|+-++..
T Consensus 224 fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 224 YDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp EEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 999994 32 1111111 136888999999999999988875
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-07 Score=87.85 Aligned_cols=91 Identities=14% Similarity=0.037 Sum_probs=65.8
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-----------------------CcEEEecCCCCCCC
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-----------------------TEYVVQDLNLNPKL 202 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-----------------------i~~~~~D~~~~~~l 202 (309)
+.+|||+|||+|... ....+..+|+++|+++.+++.+++| ++++++|+ ..+
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da---~~~ 124 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDA---NRL 124 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCH---HHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcH---HHH
Confidence 789999999988432 2223456899999999998765532 56777887 333
Q ss_pred C-CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 203 P-FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 203 p-~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
. ...++||+|++.- ...+..++..+.+.|||||+++++..
T Consensus 125 ~~~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l~vt~t 165 (378)
T 2dul_A 125 MAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTAT 165 (378)
T ss_dssp HHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHhccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEEEEEee
Confidence 2 1135799999542 22457899999999999998888753
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.9e-06 Score=70.40 Aligned_cols=90 Identities=9% Similarity=-0.045 Sum_probs=63.1
Q ss_pred CCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCCC-----------CCcEEEecCCCCC------------CCC-
Q 021661 149 GVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNPV-----------LTEYVVQDLNLNP------------KLP- 203 (309)
Q Consensus 149 ~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~~-----------~i~~~~~D~~~~~------------~lp- 203 (309)
..+|||+|||..+. +.. .++++|+.+|.+++..+.+++ +++++.+|+.... .++
T Consensus 31 a~~VLEiGtGySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~ 109 (202)
T 3cvo_A 31 AEVILEYGSGGSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPD 109 (202)
T ss_dssp CSEEEEESCSHHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTH
T ss_pred CCEEEEECchHHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHH
Confidence 67999999985433 333 237899999999998776543 3778889872100 022
Q ss_pred -------C-CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 204 -------F-EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 204 -------~-~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
. ..++||+|+.-.- .....+..+.+.|+|||.+++.
T Consensus 110 ~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 110 YPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp HHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEET
T ss_pred HhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEe
Confidence 1 2368999998763 2246677788999999999775
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=3.8e-07 Score=81.87 Aligned_cols=68 Identities=9% Similarity=0.023 Sum_probs=51.2
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC-----CCcEEEecCCCCCCCCCCC-CceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV-----LTEYVVQDLNLNPKLPFED-NSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~-----~i~~~~~D~~~~~~lp~~~-~sfDlVis~~vl 218 (309)
.++ +|||||||+|.... .+..+.+|+|+|++++|++.+++ +++++++|+ .++++++ ..+|.|+++.-.
T Consensus 46 ~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~---l~~~~~~~~~~~~iv~NlPy 120 (271)
T 3fut_A 46 FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDA---LLYPWEEVPQGSLLVANLPY 120 (271)
T ss_dssp CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCG---GGSCGGGSCTTEEEEEEECS
T ss_pred CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECCh---hhCChhhccCccEEEecCcc
Confidence 447 99999999995432 22235799999999999987654 478999999 6776654 268999887643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=6.6e-07 Score=90.57 Aligned_cols=77 Identities=12% Similarity=0.157 Sum_probs=52.4
Q ss_pred CeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCC--CCCCCceeEEEeccchh-ccC---CHH---HHHHHH
Q 021661 170 DRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL--PFEDNSFDVITNVVSVD-YLT---KPI---EVFKEM 231 (309)
Q Consensus 170 ~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~l--p~~~~sfDlVis~~vl~-~l~---d~~---~~l~~i 231 (309)
.+|+|+|+++.|++.|++| +++.++|+ .++ |..+++||+|+++--.. .+. +.. ..|.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~---~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~ 333 (703)
T 3v97_A 257 SHFYGSDSDARVIQRARTNARLAGIGELITFEVKDV---AQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRI 333 (703)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCG---GGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECCh---hhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHH
Confidence 5799999999999988765 68999999 555 33344899999983221 111 223 344555
Q ss_pred HhhcccCcEEEEEecCcc
Q 021661 232 CQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 232 ~rvLkpGG~lii~~~~~~ 249 (309)
.+.+.|||.+++-++++.
T Consensus 334 lk~~~~g~~~~ilt~~~~ 351 (703)
T 3v97_A 334 MKNQFGGWNLSLFSASPD 351 (703)
T ss_dssp HHHHCTTCEEEEEESCHH
T ss_pred HHhhCCCCeEEEEeCCHH
Confidence 555668998877666643
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.1e-06 Score=75.57 Aligned_cols=111 Identities=10% Similarity=-0.014 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNP 200 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~ 200 (309)
...+|.++..+.+ ..++.+|||||||.|... ....+...|+|+|++..+...+.. ++..+..++ +
T Consensus 75 AAfKL~ei~eK~~---Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~---d 148 (282)
T 3gcz_A 75 GSAKLRWMEERGY---VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKT---D 148 (282)
T ss_dssp HHHHHHHHHHTTS---CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC---C
T ss_pred HHHHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCc---c
Confidence 3445666666542 356889999999988543 333445589999999775444432 233344333 2
Q ss_pred CCCCCCCceeEEEeccchhccCC-----HH--HHHHHHHhhcccC--cEEEEEecC
Q 021661 201 KLPFEDNSFDVITNVVSVDYLTK-----PI--EVFKEMCQVLKPG--GLAIVSFSN 247 (309)
Q Consensus 201 ~lp~~~~sfDlVis~~vl~~l~d-----~~--~~l~~i~rvLkpG--G~lii~~~~ 247 (309)
...++.+.+|+|+|..+.. ... .. ..|+-+.++|||| |.+++-+-.
T Consensus 149 v~~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 149 VFNMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp GGGSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred hhhcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 2334567899999987655 322 11 3577778999999 999987665
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.1e-06 Score=74.66 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=71.6
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC-------------CCcEEEecCCCCCCCCCCCCceeEE
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~-------------~i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
+.+||=||.|.|..+ ....+..+|+.+|+++++++.+++ +++.+.+|+. .-+.-..++||+|
T Consensus 84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~--~~l~~~~~~yDvI 161 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGV--NFVNQTSQTFDVI 161 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTT--TTTSCSSCCEEEE
T ss_pred CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHH--HHHhhccccCCEE
Confidence 689999999977543 333445799999999999987654 3788999984 3445556789999
Q ss_pred Eeccch-----hccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 213 TNVVSV-----DYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 213 is~~vl-----~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+.-..= .++ --.++++.+.++|+|||.++....++
T Consensus 162 i~D~~dp~~~~~~L-~t~eFy~~~~~~L~p~Gv~v~q~~sp 201 (294)
T 3o4f_A 162 ISDCTDPIGPGESL-FTSAFYEGCKRCLNPGGIFVAQNGVC 201 (294)
T ss_dssp EESCCCCCCTTCCS-SCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred EEeCCCcCCCchhh-cCHHHHHHHHHHhCCCCEEEEecCCc
Confidence 975321 111 12589999999999999999875543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.4e-05 Score=69.19 Aligned_cols=116 Identities=10% Similarity=0.084 Sum_probs=67.9
Q ss_pred CCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC----CcEEEecCCCCCCCCCCCCc-eeEEEeccchh
Q 021661 147 TPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL----TEYVVQDLNLNPKLPFEDNS-FDVITNVVSVD 219 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~----i~~~~~D~~~~~~lp~~~~s-fDlVis~~vl~ 219 (309)
.++.+|||||||+|.... ...+..+|+|+|+++.|++.++++ ++++++|+ ..+++++.. ...|+++.-.
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~~vv~NlPy- 105 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDA---SKFPFCSLGKELKVVGNLPY- 105 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCT---TTCCGGGSCSSEEEEEECCT-
T ss_pred CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcch---hhCChhHccCCcEEEEECch-
Confidence 457899999999985432 222347999999999999988763 68999999 777765421 2245554332
Q ss_pred ccCCHHHHHHHHHhhcc--cCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH
Q 021661 220 YLTKPIEVFKEMCQVLK--PGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH 275 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLk--pGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~ 275 (309)
++ ....+..+..... +.+.+++. . ..-..... ...+..+....+++-
T Consensus 106 ~i--~~~il~~ll~~~~~~~~~~~m~Q--k-eva~Rl~a----~k~yg~lsv~~q~~~ 154 (249)
T 3ftd_A 106 NV--ASLIIENTVYNKDCVPLAVFMVQ--K-EVAEKLQG----KKDTGWLSVFVRTFY 154 (249)
T ss_dssp TT--HHHHHHHHHHTGGGCSEEEEEEE--H-HHHHHHHT----SSCCCHHHHHHHHHE
T ss_pred hc--cHHHHHHHHhcCCCCceEEEEEe--H-HHHHHhhc----cccccHHHHHHHhHE
Confidence 22 2334444443322 22334443 1 11111111 556677777777653
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.17 E-value=4.9e-07 Score=80.28 Aligned_cols=67 Identities=7% Similarity=0.059 Sum_probs=49.4
Q ss_pred CCCCeEEEECCCcchhccCCCCCCe--EEEEeCCHHHHhhCCCC------CcEEEecCCCCCCCCCCC-----CceeEEE
Q 021661 147 TPGVSILDLCSSWVSHFPPGYKQDR--IVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFED-----NSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~~~~~~--v~giD~S~~~l~~a~~~------i~~~~~D~~~~~~lp~~~-----~sfDlVi 213 (309)
.++.+|||||||+|.... .....+ |+|+|+++.|++.++++ ++++++|+ ..+++++ +..|.|+
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~---~~~~~~~~~~~~~~~~~vv 95 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDA---MTFNFGELAEKMGQPLRVF 95 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCG---GGCCHHHHHHHHTSCEEEE
T ss_pred CCcCEEEEECCCCcHHHH-hhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECch---hhCCHHHhhcccCCceEEE
Confidence 457899999999996544 333456 99999999999987653 68899999 6666432 2346777
Q ss_pred eccc
Q 021661 214 NVVS 217 (309)
Q Consensus 214 s~~v 217 (309)
++.-
T Consensus 96 sNlP 99 (252)
T 1qyr_A 96 GNLP 99 (252)
T ss_dssp EECC
T ss_pred ECCC
Confidence 7653
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.1e-07 Score=84.84 Aligned_cols=71 Identities=7% Similarity=0.001 Sum_probs=51.6
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCH-------HHHhhCCCC---------CcEEEecCCCCCCC-C-CCC-
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNE-------EELKRNPVL---------TEYVVQDLNLNPKL-P-FED- 206 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~-------~~l~~a~~~---------i~~~~~D~~~~~~l-p-~~~- 206 (309)
.++.+|||+|||+|... ..+..+.+|+|+|+|+ .+++.++++ ++++++|+ .++ + +++
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~---~~~l~~~~~~ 158 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA---AEQMPALVKT 158 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH---HHHHHHHHHH
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH---HHHHHhhhcc
Confidence 34689999999999542 2222367999999999 999877643 78999998 543 3 333
Q ss_pred -CceeEEEeccchhc
Q 021661 207 -NSFDVITNVVSVDY 220 (309)
Q Consensus 207 -~sfDlVis~~vl~~ 220 (309)
++||+|++.-.+.+
T Consensus 159 ~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPE 173 (258)
T ss_dssp HCCCSEEEECCCC--
T ss_pred CCCccEEEECCCCCC
Confidence 68999999766554
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-07 Score=87.38 Aligned_cols=93 Identities=11% Similarity=0.045 Sum_probs=67.3
Q ss_pred CCCeEEEECCCcchhcc---CCCCC-CeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCC-C-CCCCceeE
Q 021661 148 PGVSILDLCSSWVSHFP---PGYKQ-DRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL-P-FEDNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~---~~~~~-~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~l-p-~~~~sfDl 211 (309)
++.+|||++||+|.... ...++ .+|+++|+++.+++.+++| ++++++|+ ..+ . ...++||+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da---~~~l~~~~~~~fD~ 128 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEA---NFFLRKEWGFGFDY 128 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCH---HHHHHSCCSSCEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCH---HHHHHHhhCCCCcE
Confidence 36899999999885332 11234 5899999999999876653 56777887 322 1 12457999
Q ss_pred EEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|++.- ...+..++..+.+.|+|||+++++...
T Consensus 129 V~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~t~ 160 (392)
T 3axs_A 129 VDLDP----FGTPVPFIESVALSMKRGGILSLTATD 160 (392)
T ss_dssp EEECC----SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEECC----CcCHHHHHHHHHHHhCCCCEEEEEecc
Confidence 99865 223467999999999999988887643
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=8.7e-07 Score=80.74 Aligned_cols=67 Identities=16% Similarity=0.077 Sum_probs=50.8
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCC--CC---CCceeE
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLP--FE---DNSFDV 211 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp--~~---~~sfDl 211 (309)
.++.+|||+|||+|... ....++.+|+|+|+|+.|++.|++ +++++++|+ .+++ +. .++||.
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~---~~l~~~l~~~g~~~~D~ 101 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---READFLLKTLGIEKVDG 101 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---GGHHHHHHHTTCSCEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCH---HHHHHHHHhcCCCCCCE
Confidence 45789999999988543 333456899999999999987654 378999998 6664 11 157999
Q ss_pred EEecc
Q 021661 212 ITNVV 216 (309)
Q Consensus 212 Vis~~ 216 (309)
|++..
T Consensus 102 Vl~D~ 106 (301)
T 1m6y_A 102 ILMDL 106 (301)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 99854
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.2e-05 Score=77.01 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=70.8
Q ss_pred CCCCeEEEECCCcchhccCC------CCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCC--C-CCCC
Q 021661 147 TPGVSILDLCSSWVSHFPPG------YKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL--P-FEDN 207 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~------~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~l--p-~~~~ 207 (309)
.++.+|||.|||+|.++..+ .....++|+|+++.+...|+.+ ..+.++|. -.. | ....
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDt---L~~d~p~~~~~ 296 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADT---LDEDWPTQEPT 296 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCT---TTSCSCCSSCC
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecce---ecccccccccc
Confidence 35789999999999765432 2356899999999999887643 45788887 333 3 3467
Q ss_pred ceeEEEeccch--hc-----------------cC---C-HHHHHHHHHhhcc-cCcEEEEEecCc
Q 021661 208 SFDVITNVVSV--DY-----------------LT---K-PIEVFKEMCQVLK-PGGLAIVSFSNR 248 (309)
Q Consensus 208 sfDlVis~~vl--~~-----------------l~---d-~~~~l~~i~rvLk-pGG~lii~~~~~ 248 (309)
.||+|+++--+ .+ ++ + .-.++..+.+.|| |||.+.+-+++.
T Consensus 297 ~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g 361 (542)
T 3lkd_A 297 NFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHG 361 (542)
T ss_dssp CBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred cccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecch
Confidence 89999987211 11 10 0 1258999999999 999988777764
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-06 Score=83.01 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=61.4
Q ss_pred CCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCC-CCC-CCCceeEEEec
Q 021661 149 GVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPK-LPF-EDNSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~-lp~-~~~sfDlVis~ 215 (309)
+.+|||+|||+|.. +..+..+.+|+|+|+|+.|++.++++ ++++++|+ .+ ++. ++++||+|++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da---~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDF---KEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCG---GGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcH---HHhhhhccCCCceEEEEC
Confidence 78999999999854 22333467999999999999876543 67899998 44 232 23579999985
Q ss_pred c--------chhccCCHHHHHHHHHhhccc-CcEEEEEecCc
Q 021661 216 V--------SVDYLTKPIEVFKEMCQVLKP-GGLAIVSFSNR 248 (309)
Q Consensus 216 ~--------vl~~l~d~~~~l~~i~rvLkp-GG~lii~~~~~ 248 (309)
- -+..+.+...-+.++.+.|.. +..+++..+..
T Consensus 171 PPrr~~~~grv~~led~~P~l~~~~~~l~~~~~~~~vK~sP~ 212 (410)
T 3ll7_A 171 PARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPM 212 (410)
T ss_dssp CEEC-----CCCCGGGEESCHHHHHHHHGGGSSEEEEEECTT
T ss_pred CCCcCCCCceEEehhhcCCCHHHHHHHHHhhCCcEEEEcCCC
Confidence 2 122222222234444443333 34666665543
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.8e-06 Score=84.85 Aligned_cols=98 Identities=15% Similarity=0.038 Sum_probs=67.2
Q ss_pred CeEEEECCCcchhccCCC------------------CCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCC
Q 021661 150 VSILDLCSSWVSHFPPGY------------------KQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKL 202 (309)
Q Consensus 150 ~~ILDiGcG~g~~~~~~~------------------~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~l 202 (309)
.+|||.|||+|.++..+. ....++|+|+++.++..|+.+ +.+.++|.- ...
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL--~~~ 323 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSF--LDD 323 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTT--TSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchh--cCc
Confidence 499999999996553321 035899999999999887753 222566651 222
Q ss_pred CCCCCceeEEEeccchhc-------------------------cC----CHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 203 PFEDNSFDVITNVVSVDY-------------------------LT----KPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~-------------------------l~----d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
.+.+.+||+|+++--+.. ++ ..-.+++.+.+.|||||.+.+-+++..
T Consensus 324 ~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g~ 399 (544)
T 3khk_A 324 QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANGS 399 (544)
T ss_dssp SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETHH
T ss_pred ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecchh
Confidence 245678999999732221 11 112689999999999999888777643
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-06 Score=77.20 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=42.2
Q ss_pred CCCCeEEEECCCcchhccCC-CCC----CeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQ----DRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~----~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp~~ 205 (309)
.++.+|||||||+|...... ... .+|+|+|++++|++.+++ +++++++|+ .+++++
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~---~~~~~~ 105 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDA---LTFDFG 105 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCG---GGCCGG
T ss_pred CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECCh---hcCChh
Confidence 45789999999999543221 112 349999999999998865 488999999 677654
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00013 Score=65.56 Aligned_cols=108 Identities=8% Similarity=-0.032 Sum_probs=66.3
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLP 203 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp 203 (309)
+|.++..+. ...++.+||||||+.|... ....+...|+|+|+...+...... ++.....+. +...
T Consensus 69 KL~ei~ek~---l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~---di~~ 142 (300)
T 3eld_A 69 KIRWLHERG---YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKS---NVFT 142 (300)
T ss_dssp HHHHHHHHT---SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC---CTTT
T ss_pred HHHHHHHhC---CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCc---eeee
Confidence 444444441 2356899999999987543 333334579999998654322211 122233333 2223
Q ss_pred CCCCceeEEEeccchhccCCH-------HHHHHHHHhhcccC-cEEEEEecC
Q 021661 204 FEDNSFDVITNVVSVDYLTKP-------IEVFKEMCQVLKPG-GLAIVSFSN 247 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~-------~~~l~~i~rvLkpG-G~lii~~~~ 247 (309)
+..+.+|+|+|..+-. .... ...|.-+.++|+|| |.|++-+-.
T Consensus 143 l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 143 MPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp SCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred cCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 4567899999976544 3221 24577778999999 999988665
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.80 E-value=2.7e-06 Score=75.79 Aligned_cols=86 Identities=12% Similarity=-0.043 Sum_probs=55.5
Q ss_pred CeEEEECCCcchh-ccCCCCCCeEEEEeCCHHH-------HhhCC----------CCCcEEEecCCCCCC-CCCCCCcee
Q 021661 150 VSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEE-------LKRNP----------VLTEYVVQDLNLNPK-LPFEDNSFD 210 (309)
Q Consensus 150 ~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~-------l~~a~----------~~i~~~~~D~~~~~~-lp~~~~sfD 210 (309)
.+|||+|||+|.. +..+..+++|+++|+++.+ ++.++ .+++++++|+ .+ ++...++||
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~---~~~L~~~~~~fD 166 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS---LTALTDITPRPQ 166 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH---HHHSTTCSSCCS
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH---HHHHHhCcccCC
Confidence 8999999999853 2222236789999999965 43332 2478999998 43 332223699
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcccCc
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLKPGG 239 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLkpGG 239 (309)
+|++.-.+.+- ....++++..++|++.+
T Consensus 167 vV~lDP~y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 167 VVYLDPMFPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp EEEECCCCCCC-CC-----HHHHHHHHHS
T ss_pred EEEEcCCCCCc-ccchHHHHHHHHHHHhh
Confidence 99998877653 23356666777777654
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.78 E-value=4.5e-05 Score=77.37 Aligned_cols=204 Identities=10% Similarity=0.030 Sum_probs=107.4
Q ss_pred ccccccceeeeehhhHHHhhhhhhhcc-cCcchhhHHHhhcchhhhhhhCCCCCCCCC-C------C----h---hHHhh
Q 021661 43 RRFKASRRLVVGLGAAFCSQFMTMAGT-LGANSLIASARQRGAVEQVLKDVQWPEQFP-F------K----E---EDFQR 107 (309)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~r~~~~~~~~~~~v~~v~~~~~w~~~~p-~------~----~---e~f~~ 107 (309)
...-++++.+..+++-+-+-+++-.|. ..-+.........+.+..++....|+.... . . . +.+..
T Consensus 189 ~~~~~~~~~~~~~~~e~ir~~l~~~~~~~~~~~~~~f~~n~~~L~gv~~~idFns~~~~~lgd~k~sd~~l~~LLe~~~d 268 (878)
T 3s1s_A 189 DNSTSWHQALVVAGYEYIRGVLRGQNVEVPTRDAIYFKSRPGRLLEEGRKIDFNVLFSEPEPNTNDNDIWNVNLLSSLND 268 (878)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTTCCCCSSCGGGGSSCHHHHHHHHHTTSCTTTSCSSCCCTTCTTTCCHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhcCcccccchhhhhhhCHHHHHhHhhcCCccccccccccccccchHHHHHHHHHHHH
Confidence 346777888888888888877764431 111212222222335777888888775431 0 0 0 00000
Q ss_pred ---ccCCCCccc-----cc---CCccccc-CCHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccC---CC---CC
Q 021661 108 ---FDESPDSLF-----YE---TPRFVTH-IDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP---GY---KQ 169 (309)
Q Consensus 108 ---~~~~~~~~~-----y~---~~~~~~~-~~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~---~~---~~ 169 (309)
.....+... |. ....-.. ........+.++....++....++.+|||.|||+|..+.. .. ..
T Consensus 269 L~~~r~~~DdL~ell~eya~k~Rkk~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~ 348 (878)
T 3s1s_A 269 LGRRILTGDELAELIHDIATRGRGHEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMP 348 (878)
T ss_dssp HHHHHCSSHHHHHHHHHHHTTSCCCCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCG
T ss_pred HhhccCchHHHHHHHHHHHHHhCCcCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCC
Confidence 000001000 00 0011111 1223333334332222332223578999999999965432 12 13
Q ss_pred CeEEEEeCCHHHHhhC--CCC------------CcEEEecCCCCCCC-CCCCCceeEEEeccchhc-cC-----------
Q 021661 170 DRIVGMGMNEEELKRN--PVL------------TEYVVQDLNLNPKL-PFEDNSFDVITNVVSVDY-LT----------- 222 (309)
Q Consensus 170 ~~v~giD~S~~~l~~a--~~~------------i~~~~~D~~~~~~l-p~~~~sfDlVis~~vl~~-l~----------- 222 (309)
.+++|+|+++.+++.| +.+ ..+...|+ ... +...+.||+|+++--... ..
T Consensus 349 ~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~---L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r 425 (878)
T 3s1s_A 349 RQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDV---CSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHK 425 (878)
T ss_dssp GGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCG---GGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecch---hcccccccCCCCEEEECCCccccccchhhhhhHHHH
Confidence 5899999999998877 211 12333333 221 223567999999743210 00
Q ss_pred ----------------C-HHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 223 ----------------K-PIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 223 ----------------d-~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
+ ...+++.+.+.|||||.+.+-+++..
T Consensus 426 ~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 426 IIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY 469 (878)
T ss_dssp HHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred hhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence 1 34578999999999999988877643
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.9e-05 Score=76.34 Aligned_cols=87 Identities=13% Similarity=0.089 Sum_probs=60.7
Q ss_pred CCeEEEECCCcchhc---cCC----CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEE
Q 021661 149 GVSILDLCSSWVSHF---PPG----YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~----~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
...|||||||+|... ..+ ....+|++||-|+.+. .+++ +++++++|+ +++.++ +++|+|
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~~dkVtVI~gd~---eev~LP-EKVDII 432 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEWGSQVTVVSSDM---REWVAP-EKADII 432 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTTGGGEEEEESCT---TTCCCS-SCEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccCCCeEEEEeCcc---eeccCC-cccCEE
Confidence 458999999999442 111 1223789999998543 3332 389999999 777665 569999
Q ss_pred Eec----cchhccCCHHHHHHHHHhhcccCcEEE
Q 021661 213 TNV----VSVDYLTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 213 is~----~vl~~l~d~~~~l~~i~rvLkpGG~li 242 (309)
||= +.+.. ....++....|.|||||.++
T Consensus 433 VSEwMG~fLl~E--~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VSELLGSFADNE--LSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ECCCCBTTBGGG--CHHHHHHHHGGGEEEEEEEE
T ss_pred EEEcCccccccc--CCHHHHHHHHHhcCCCcEEc
Confidence 983 22222 23368888899999999764
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.1e-05 Score=62.59 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcch-h-ccCC-CCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCC-
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVS-H-FPPG-YKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFED- 206 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~-~-~~~~-~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~- 206 (309)
...+.+++.+.... +.+|||||||.|. . ...+ ..+..|+++|+|+..++ +++.|+. + |..+
T Consensus 22 ~e~LaeYI~~~~~~----~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~-------~v~dDiF---~-P~~~~ 86 (153)
T 2k4m_A 22 WNDLAVYIIRCSGP----GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG-------IVRDDIT---S-PRMEI 86 (153)
T ss_dssp HHHHHHHHHHHSCS----SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT-------EECCCSS---S-CCHHH
T ss_pred HHHHHHHHHhcCCC----CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc-------eEEccCC---C-Ccccc
Confidence 45567777766653 6799999999883 2 2222 25778999999998766 8888983 3 3221
Q ss_pred -CceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 207 -NSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 207 -~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..||+|.+..- -++....+.++.+.. |.-++|.
T Consensus 87 Y~~~DLIYsirP---P~El~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 87 YRGAALIYSIRP---PAEIHSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp HTTEEEEEEESC---CTTTHHHHHHHHHHH--TCEEEEE
T ss_pred cCCcCEEEEcCC---CHHHHHHHHHHHHHc--CCCEEEE
Confidence 37999987542 234455555555443 3455554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.4e-05 Score=71.17 Aligned_cols=93 Identities=14% Similarity=0.114 Sum_probs=61.1
Q ss_pred CCCeEEEECCCcchhccC---C-------CCC-----CeEEEEeCCH---HHHhhC-----------C------------
Q 021661 148 PGVSILDLCSSWVSHFPP---G-------YKQ-----DRIVGMGMNE---EELKRN-----------P------------ 186 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~---~-------~~~-----~~v~giD~S~---~~l~~a-----------~------------ 186 (309)
++.+|||||+|+|..+.. . .|. .+++++|..+ +++..+ +
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 467999999999943211 1 342 4899999776 444321 1
Q ss_pred ----------CCCcEEEecCCCCCC-CCCCC----CceeEEEecc-chhccCC--HHHHHHHHHhhcccCcEEEE
Q 021661 187 ----------VLTEYVVQDLNLNPK-LPFED----NSFDVITNVV-SVDYLTK--PIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 187 ----------~~i~~~~~D~~~~~~-lp~~~----~sfDlVis~~-vl~~l~d--~~~~l~~i~rvLkpGG~lii 243 (309)
.+++++.+|+ .+ ++..+ ..||+|+... .-...++ ..++|+.+.++|||||.|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa---~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDI---NELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCH---HHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcH---HHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 1256788887 33 44322 2799999852 3222223 36899999999999998873
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.71 E-value=8.3e-06 Score=81.42 Aligned_cols=91 Identities=15% Similarity=0.053 Sum_probs=63.0
Q ss_pred CCeEEEECCCcchhc---cCCC-------------CCCeEEEEeCCHHHHhhCC--------CCCcEEEecCCCCCCCCC
Q 021661 149 GVSILDLCSSWVSHF---PPGY-------------KQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPF 204 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~-------------~~~~v~giD~S~~~l~~a~--------~~i~~~~~D~~~~~~lp~ 204 (309)
...|||||||+|... ..+. ...+|++||-|+.++...+ .+++++++|+ +++.+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~---eev~l 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDM---RSLPG 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCG---GGHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCch---hhccc
Confidence 458999999999552 1111 2349999999986553222 2499999999 77765
Q ss_pred C-----CCceeEEEeccchhcc--CCHHHHHHHHHhhcccCcEEE
Q 021661 205 E-----DNSFDVITNVVSVDYL--TKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 205 ~-----~~sfDlVis~~vl~~l--~d~~~~l~~i~rvLkpGG~li 242 (309)
+ .++.|+|||=..=..+ .-..+.|..+.+.|||||.++
T Consensus 487 p~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 3 5689999985431111 123468888899999999754
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=5.5e-05 Score=66.64 Aligned_cols=109 Identities=10% Similarity=-0.054 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc--cCCC-CCCeEEEEeCCHH--HHhhCC--CCC---cEEEe-cCCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF--PPGY-KQDRIVGMGMNEE--ELKRNP--VLT---EYVVQ-DLNL 198 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~--~~~~-~~~~v~giD~S~~--~l~~a~--~~i---~~~~~-D~~~ 198 (309)
...+|.++-.+. ...++++|||+||+.|... .... .-..|.|.++... +..... ..+ .+.++ |+
T Consensus 58 AayKL~EIdeK~---likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df-- 132 (269)
T 2px2_A 58 GTAKLRWLVERR---FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDV-- 132 (269)
T ss_dssp HHHHHHHHHHTT---SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCG--
T ss_pred HHHHHHHHHHcC---CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCc--
Confidence 344556655553 3567999999999877432 2222 1223344444433 222221 123 34446 98
Q ss_pred CCCCCCCCCceeEEEeccchh-------ccCCHHHHHHHHHhhcccCc-EEEEEecC
Q 021661 199 NPKLPFEDNSFDVITNVVSVD-------YLTKPIEVFKEMCQVLKPGG-LAIVSFSN 247 (309)
Q Consensus 199 ~~~lp~~~~sfDlVis~~vl~-------~l~d~~~~l~~i~rvLkpGG-~lii~~~~ 247 (309)
..+ +...+|+|+|-.+=. |.... .+|.-+.++|+||| .+++-+-+
T Consensus 133 -~~~--~~~~~DvVLSDMAPnSG~~~vD~~Rs~-~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 133 -FYK--PSEISDTLLCDIGESSPSAEIEEQRTL-RILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp -GGS--CCCCCSEEEECCCCCCSCHHHHHHHHH-HHHHHHHHHHTTCCSEEEEEESC
T ss_pred -cCC--CCCCCCEEEeCCCCCCCccHHHHHHHH-HHHHHHHHHhhcCCcEEEEEECC
Confidence 443 345799999864322 11111 26777779999999 88887655
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=6.6e-05 Score=85.43 Aligned_cols=95 Identities=14% Similarity=0.143 Sum_probs=47.9
Q ss_pred CCCeEEEECCCcchhccC----C--CC--CCeEEEEeCCHHHHhhCCCCC---cEEE--ecCCCCCCC-CCCCCceeEEE
Q 021661 148 PGVSILDLCSSWVSHFPP----G--YK--QDRIVGMGMNEEELKRNPVLT---EYVV--QDLNLNPKL-PFEDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~----~--~~--~~~v~giD~S~~~l~~a~~~i---~~~~--~D~~~~~~l-p~~~~sfDlVi 213 (309)
+..+|||||.|+|..... . .+ ..+++..|+|+...+.++++. +... .|. ... ++..++||+|+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~---~~~~~~~~~~ydlvi 1316 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDP---ANPAPGSLGKADLLV 1316 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCS---SCCCC-----CCEEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccc---cccccCCCCceeEEE
Confidence 467999999998753221 1 11 347999999999988888762 2222 233 221 33456799999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+.+++|...+....|++++++|||||.+++..
T Consensus 1317 a~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1317 CNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp EECC--------------------CCEEEEEE
T ss_pred EcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 99999988899999999999999999877653
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0014 Score=58.79 Aligned_cols=109 Identities=13% Similarity=0.045 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHh-------hCCCCCcEEEe-cCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELK-------RNPVLTEYVVQ-DLNLN 199 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~-------~a~~~i~~~~~-D~~~~ 199 (309)
..+|.+...+.+ ..++.+||||||+.|... .......+|+|+|+-..-.+ .+-..+.+.++ |+
T Consensus 80 ~~KL~ei~~~~~---l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv--- 153 (321)
T 3lkz_A 80 TAKLRWLVERRF---LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDV--- 153 (321)
T ss_dssp HHHHHHHHHTTS---CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCT---
T ss_pred HHHHHHHHHhcC---CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCH---
Confidence 345555555522 356789999999987433 33333347999999876211 11123777777 87
Q ss_pred CCCCCCCCceeEEEeccchhccCCHH-------HHHHHHHhhcccC-cEEEEEecCc
Q 021661 200 PKLPFEDNSFDVITNVVSVDYLTKPI-------EVFKEMCQVLKPG-GLAIVSFSNR 248 (309)
Q Consensus 200 ~~lp~~~~sfDlVis~~vl~~l~d~~-------~~l~~i~rvLkpG-G~lii~~~~~ 248 (309)
..++. ..+|+|+|--. +--+++. .+|+-+.+.|++| |.+++-+-.+
T Consensus 154 ~~l~~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 154 FYRPS--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp TSSCC--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred hhCCC--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 56653 56999999766 4444432 3677778999999 8888887665
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00019 Score=64.58 Aligned_cols=94 Identities=7% Similarity=-0.002 Sum_probs=63.5
Q ss_pred CCeEEEECCCcchhc---cCC-----CCCCeEEEEeCCHHH--------------------------Hh-------hC--
Q 021661 149 GVSILDLCSSWVSHF---PPG-----YKQDRIVGMGMNEEE--------------------------LK-------RN-- 185 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~-----~~~~~v~giD~S~~~--------------------------l~-------~a-- 185 (309)
+..|||+|+..|... ... .+..+|+++|..+.+ ++ .+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 579999999877322 111 146799999964221 11 11
Q ss_pred -CCCCcEEEecCCCCCCCC-CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 186 -PVLTEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 186 -~~~i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..+++++++|+. +.+| +++++||+|+.-.-. -......|+.+.+.|+|||++++.-.
T Consensus 187 ~~~~I~li~Gda~--etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 187 LDEQVRFLPGWFK--DTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CSTTEEEEESCHH--HHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CcCceEEEEeCHH--HHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 245889999983 3344 345789999987532 12345789999999999999998643
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0009 Score=62.41 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=65.4
Q ss_pred CCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC----------------CcEEEecCCCCCCC---CCC
Q 021661 147 TPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL----------------TEYVVQDLNLNPKL---PFE 205 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~----------------i~~~~~D~~~~~~l---p~~ 205 (309)
.++.+||=||.|.|..+. ..++..+|+.+|+++.+++.+++. ++.+..|+. .-+ +-.
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~--~fl~~~~~~ 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCI--PVLKRYAKE 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHH--HHHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHH--HHHHhhhhc
Confidence 346899999999775432 234557999999999999987642 455666651 111 113
Q ss_pred CCceeEEEeccchhcc-CC---------HHHHHHHHHhhcccCcEEEEEec
Q 021661 206 DNSFDVITNVVSVDYL-TK---------PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l-~d---------~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+.||+|+.-..-... .+ -+++++.+.++|+|||.++....
T Consensus 282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~ 332 (381)
T 3c6k_A 282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGN 332 (381)
T ss_dssp TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecC
Confidence 4579999975321110 11 25789999999999999987643
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00041 Score=64.48 Aligned_cols=85 Identities=14% Similarity=0.033 Sum_probs=59.5
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHh-hCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELK-RNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 224 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~-~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~ 224 (309)
.+++++||+||+.|.... ....+++|+|||+.+-.-. ....+++++++|+ .....+.+.||+|+|-.+ .++
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~~~~~V~~~~~d~---~~~~~~~~~~D~vvsDm~----~~p 282 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDG---FKFRPTRSNISWMVCDMV----EKP 282 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHHTTTCEEEECSCT---TTCCCCSSCEEEEEECCS----SCH
T ss_pred CCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhccCCCeEEEeCcc---ccccCCCCCcCEEEEcCC----CCh
Confidence 459999999998774321 2224789999998642111 1234589999998 566556678999999654 367
Q ss_pred HHHHHHHHhhcccC
Q 021661 225 IEVFKEMCQVLKPG 238 (309)
Q Consensus 225 ~~~l~~i~rvLkpG 238 (309)
...+.-+.+.|..|
T Consensus 283 ~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 283 AKVAALMAQWLVNG 296 (375)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHhcc
Confidence 77777777777766
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00057 Score=61.29 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=61.0
Q ss_pred CCCCCeEEEECCC------cchhc-cCCCCC-CeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 146 NTPGVSILDLCSS------WVSHF-PPGYKQ-DRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 146 ~~~~~~ILDiGcG------~g~~~-~~~~~~-~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
...+++|||+|+| .|+.. ....+. +.|+++|+.+-... + ..++++|. ..+. ..+.||+|+|-.+
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~sd-a---~~~IqGD~---~~~~-~~~k~DLVISDMA 178 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSD-A---DSTLIGDC---ATVH-TANKWDLIISDMY 178 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCS-S---SEEEESCG---GGEE-ESSCEEEEEECCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccccC-C---CeEEEccc---cccc-cCCCCCEEEecCC
Confidence 4568999999984 33332 223454 59999999875421 1 24599997 4433 2477999997421
Q ss_pred ---hhcc--CC------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 218 ---VDYL--TK------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 218 ---l~~l--~d------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
--+. +. -+.++.-+.++|+|||.|++-+-+
T Consensus 179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQ 219 (344)
T 3r24_A 179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE 219 (344)
T ss_dssp CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEec
Confidence 1111 11 256777788899999999886543
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0005 Score=67.24 Aligned_cols=109 Identities=18% Similarity=0.261 Sum_probs=70.2
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhccCCC----------------CCCeEEEEeCCHHHHhhCCCC--------Cc
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY----------------KQDRIVGMGMNEEELKRNPVL--------TE 190 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~----------------~~~~v~giD~S~~~l~~a~~~--------i~ 190 (309)
.+++.+.+.+ .++.+|+|-+||+|.++..+. ....++|+|+++.+...|+-+ ..
T Consensus 206 v~lmv~l~~p--~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~ 283 (530)
T 3ufb_A 206 VRFMVEVMDP--QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPR 283 (530)
T ss_dssp HHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred HHHHHHhhcc--CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcccc
Confidence 3444445543 457799999999997653221 124699999999988877643 34
Q ss_pred EEEecCCCCCCCCC----CCCceeEEEeccchh--c-------c------CC-HHHHHHHHHhhcc-------cCcEEEE
Q 021661 191 YVVQDLNLNPKLPF----EDNSFDVITNVVSVD--Y-------L------TK-PIEVFKEMCQVLK-------PGGLAIV 243 (309)
Q Consensus 191 ~~~~D~~~~~~lp~----~~~sfDlVis~~vl~--~-------l------~d-~~~~l~~i~rvLk-------pGG~lii 243 (309)
+..+|. -..|. +...||+|+++--+. + . .+ ...++..+.+.|| |||.+.+
T Consensus 284 I~~~dt---L~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av 360 (530)
T 3ufb_A 284 IDPENS---LRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV 360 (530)
T ss_dssp EECSCT---TCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred cccccc---ccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence 566665 23222 234799999984332 1 1 01 1357788888887 6998887
Q ss_pred EecCc
Q 021661 244 SFSNR 248 (309)
Q Consensus 244 ~~~~~ 248 (309)
-+|+.
T Consensus 361 VlP~g 365 (530)
T 3ufb_A 361 VVPNG 365 (530)
T ss_dssp EEEHH
T ss_pred Eecch
Confidence 77753
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.01 Score=51.62 Aligned_cols=109 Identities=17% Similarity=0.106 Sum_probs=69.8
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhh-------CCCCCcEEEe-cCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKR-------NPVLTEYVVQ-DLNLN 199 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~-------a~~~i~~~~~-D~~~~ 199 (309)
..+|.+...+.+ ..++++||||||+.|.. ........+|+|+|+-..-.+. .-..++|.++ |+
T Consensus 64 ~~KL~ei~ek~~---l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv--- 137 (267)
T 3p8z_A 64 SAKLQWFVERNM---VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDV--- 137 (267)
T ss_dssp HHHHHHHHHTTS---SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCG---
T ss_pred HHHHHHHHHhcC---CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccce---
Confidence 345555555542 35688999999987743 3344444589999998653321 1123889988 87
Q ss_pred CCCCCCCCceeEEEeccchhccCCH-------HHHHHHHHhhcccCcEEEEEecCcc
Q 021661 200 PKLPFEDNSFDVITNVVSVDYLTKP-------IEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 200 ~~lp~~~~sfDlVis~~vl~~l~d~-------~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
..++. ..+|+|+|--.= --+++ -++|+-+.+.|++ |.+++-+-.+.
T Consensus 138 ~~~~~--~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py 190 (267)
T 3p8z_A 138 FYLPP--EKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY 190 (267)
T ss_dssp GGCCC--CCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred eecCC--ccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence 44542 569999996543 12222 2377777899999 78877766543
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0016 Score=58.27 Aligned_cols=66 Identities=18% Similarity=0.165 Sum_probs=48.2
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCC-----CCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLP-----FEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp-----~~~~sfDlVis~ 215 (309)
.++..+||.+||.|.+.... ..+++|+|+|.++.+++.+++ ++.++++|. .+++ ...+++|.|++.
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f---~~l~~~L~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNF---RHLKRHLAALGVERVDGILAD 96 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCG---GGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCc---chHHHHHHHcCCCCcCEEEeC
Confidence 45789999999988543211 116899999999999987653 578999998 5553 122579999964
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.003 Score=56.89 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=32.9
Q ss_pred CCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCCC
Q 021661 148 PGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPVL 188 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~~ 188 (309)
++..|||++||+|..... ...+.+++|+|+++.+++.++++
T Consensus 235 ~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 235 VGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKER 276 (297)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 478999999999965432 23467999999999999988765
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.029 Score=51.41 Aligned_cols=66 Identities=11% Similarity=0.048 Sum_probs=47.9
Q ss_pred CCCCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCC--CC----CCceeEE
Q 021661 147 TPGVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLP--FE----DNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp--~~----~~sfDlV 212 (309)
.++..++|..||.|.+ ++.. .+.++|+|+|.++.+++.+++ ++++++++. .++. ++ .+++|.|
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF---~~l~~~L~~~g~~~~vDgI 132 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPF---SALGEYVAERDLIGKIDGI 132 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCG---GGHHHHHHHTTCTTCEEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCH---HHHHHHHHhcCCCCcccEE
Confidence 5688999999997743 3333 467899999999999998743 367888887 4542 11 1369999
Q ss_pred Eec
Q 021661 213 TNV 215 (309)
Q Consensus 213 is~ 215 (309)
+..
T Consensus 133 LfD 135 (347)
T 3tka_A 133 LLD 135 (347)
T ss_dssp EEE
T ss_pred EEC
Confidence 964
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=94.24 E-value=0.28 Score=44.30 Aligned_cols=96 Identities=16% Similarity=0.097 Sum_probs=65.7
Q ss_pred CeEEEECCCcchh-ccCCCC-CCeEEEEeCCHHHHhhCC-----------CCCcEEEecCCCCCCC-------CCCCCce
Q 021661 150 VSILDLCSSWVSH-FPPGYK-QDRIVGMGMNEEELKRNP-----------VLTEYVVQDLNLNPKL-------PFEDNSF 209 (309)
Q Consensus 150 ~~ILDiGcG~g~~-~~~~~~-~~~v~giD~S~~~l~~a~-----------~~i~~~~~D~~~~~~l-------p~~~~sf 209 (309)
..|++||||.-.. .....+ +.+|+=+|. |..++..+ .+..++.+|+.. .+ .+..+.-
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~-P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d--~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQ--DWPPALRSAGFDPSAR 180 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTS--CHHHHHHHTTCCTTSC
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCC-HHHHHHHHHHHHhcCCCCCCCeEEEecchHh--hHHHHHHhccCCCCCC
Confidence 5799999994432 222223 479999995 77665322 236788888832 11 0222334
Q ss_pred eEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 210 DVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 210 DlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
=++++-.+++++++ ...+++.+...+.||+.++++..+.
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~ 221 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL 221 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence 57778889999964 5678999999999999999997654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.66 E-value=0.023 Score=51.01 Aligned_cols=56 Identities=21% Similarity=0.397 Sum_probs=39.3
Q ss_pred CcEEEecCCCCCC-CC-CCCCceeEEEeccchh--------------------ccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 189 TEYVVQDLNLNPK-LP-FEDNSFDVITNVVSVD--------------------YLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 i~~~~~D~~~~~~-lp-~~~~sfDlVis~~vl~--------------------~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+.++++|. .+ ++ +++++||+|+++--.. ++.....+++++.++|||||.+++...
T Consensus 22 ~~i~~gD~---~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 22 HRLHVGDA---REVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp EEEEESCH---HHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CEEEECcH---HHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 57888887 33 32 4568899999873221 111235678899999999999988866
Q ss_pred C
Q 021661 247 N 247 (309)
Q Consensus 247 ~ 247 (309)
.
T Consensus 99 d 99 (297)
T 2zig_A 99 D 99 (297)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.03 Score=50.63 Aligned_cols=51 Identities=10% Similarity=0.213 Sum_probs=35.4
Q ss_pred CcEEEecCCCCCCCC-CCCCceeEEEeccchhccCCH----HHHHHHHHhhcccCcEEE
Q 021661 189 TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLTKP----IEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 189 i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~d~----~~~l~~i~rvLkpGG~li 242 (309)
.++..+|+. +.++ +++..||+|+.-. +.--.+| .++|+.|+++++|||.++
T Consensus 168 L~l~~GDa~--~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~la 223 (308)
T 3vyw_A 168 LKVLLGDAR--KRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWV 223 (308)
T ss_dssp EEEEESCHH--HHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEE
T ss_pred EEEEechHH--HHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEE
Confidence 456778873 2344 3445799998743 3333344 589999999999999876
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.09 Score=43.60 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=56.0
Q ss_pred CCCCCeEEEECC-C-cchhccC--CCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----C-CCCCceeEEEe
Q 021661 146 NTPGVSILDLCS-S-WVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----P-FEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGc-G-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p-~~~~sfDlVis 214 (309)
..++.+||.+|+ | .|..... ...+.+|+++|.+++.++.+++. ... ..|... .+. . ...+.+|+|+.
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~-~~d~~~-~~~~~~~~~~~~~~~~D~vi~ 113 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEY-VGDSRS-VDFADEILELTDGYGVDVVLN 113 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSE-EEETTC-STHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCE-EeeCCc-HHHHHHHHHHhCCCCCeEEEE
Confidence 356889999995 3 4533221 12367999999999887766543 222 235421 111 0 12246999997
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+.. ...++++.+.|+|||.+++
T Consensus 114 ~~g-------~~~~~~~~~~l~~~G~~v~ 135 (198)
T 1pqw_A 114 SLA-------GEAIQRGVQILAPGGRFIE 135 (198)
T ss_dssp CCC-------THHHHHHHHTEEEEEEEEE
T ss_pred CCc-------hHHHHHHHHHhccCCEEEE
Confidence 653 2568899999999997765
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.15 Score=44.91 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=39.8
Q ss_pred CCCcEEEecCCCCCCCC-----CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 187 VLTEYVVQDLNLNPKLP-----FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 187 ~~i~~~~~D~~~~~~lp-----~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+++++.+++. +.+| .+.++||+|+.-.- +-......++.+...|+|||++++...
T Consensus 158 ~~i~li~G~~~--dTL~~~l~~~~~~~~dlv~ID~D--~Y~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 158 QRSVLVEGDVR--ETVPRYLAENPQTVIALAYFDLD--LYEPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp CSEEEEESCHH--HHHHHHHHHCTTCCEEEEEECCC--CHHHHHHHHHHHGGGEEEEEEEEESST
T ss_pred CcEEEEEecHH--HHHHHHHHhCCCCceEEEEEcCc--ccchHHHHHHHHHHHhCCCcEEEEcCC
Confidence 34788999883 3343 23457999998762 222345689999999999999999754
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.24 E-value=0.28 Score=45.45 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=61.1
Q ss_pred CCCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC------CCCCceeEEE
Q 021661 146 NTPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVIT 213 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp------~~~~sfDlVi 213 (309)
..++.+||-+|+| .|.. +.+.. +. +|+++|.+++-++.+++. .+ ..|......+. .....+|+|+
T Consensus 183 ~~~g~~VlV~GaG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~a~~lGa~--~i~~~~~~~~~~~v~~~t~g~g~Dvvi 259 (398)
T 1kol_A 183 VGPGSTVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKAQGFE--IADLSLDTPLHEQIAALLGEPEVDCAV 259 (398)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTTCE--EEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHcCCc--EEccCCcchHHHHHHHHhCCCCCCEEE
Confidence 3568999999997 3432 22333 45 799999999988887664 33 33431101010 1123699999
Q ss_pred eccchh---------ccCCHHHHHHHHHhhcccCcEEEE
Q 021661 214 NVVSVD---------YLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 214 s~~vl~---------~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
-+..-. |..++...++++.++|++||.+++
T Consensus 260 d~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~ 298 (398)
T 1kol_A 260 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 298 (398)
T ss_dssp ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEE
T ss_pred ECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEE
Confidence 665422 334566789999999999998765
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.15 E-value=0.22 Score=46.28 Aligned_cols=93 Identities=16% Similarity=0.117 Sum_probs=59.5
Q ss_pred CCCCeEEEECCC-cchhc---cCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-C-----C-CCCceeEEE
Q 021661 147 TPGVSILDLCSS-WVSHF---PPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-P-----F-EDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-p-----~-~~~sfDlVi 213 (309)
.++.+||-+|+| .|... .... +. +|+++|.|++.++.+++. .+ ..|... .+. . . ....+|+|+
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~--~i~~~~-~~~~~~~~~~~~~g~g~Dvvi 259 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLL-GAACVIVGDQNPERLKLLSDAGFE--TIDLRN-SAPLRDQIDQILGKPEVDCGV 259 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHHHHTTTCE--EEETTS-SSCHHHHHHHHHSSSCEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHHcCCc--EEcCCC-cchHHHHHHHHhCCCCCCEEE
Confidence 568999999997 34322 2222 45 899999999998888764 33 344411 111 0 0 123699999
Q ss_pred eccchhcc--------CCHHHHHHHHHhhcccCcEEEE
Q 021661 214 NVVSVDYL--------TKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 214 s~~vl~~l--------~d~~~~l~~i~rvLkpGG~lii 243 (309)
-...-... .++...++++.+.|++||.+++
T Consensus 260 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~ 297 (398)
T 2dph_A 260 DAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGI 297 (398)
T ss_dssp ECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEEC
T ss_pred ECCCCccccccccccccccHHHHHHHHHHHhcCCEEEE
Confidence 76543311 0234578999999999997764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.54 E-value=0.13 Score=45.10 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=32.7
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVL 188 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~ 188 (309)
.++..|||..||+|.....+ ..+.+++|+|+++.+++.++++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r 253 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFV 253 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 34889999999988654332 2367999999999999887654
|
| >1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U | Back alignment and structure |
|---|
Probab=90.52 E-value=0.38 Score=49.86 Aligned_cols=97 Identities=14% Similarity=0.100 Sum_probs=70.9
Q ss_pred CCCeEEEECCCcc-hhccCCCCCCeEEEEeCCHHHH---hhCCCCCcEEEecCCCCCCCC-CCCCceeEEEeccchhcc-
Q 021661 148 PGVSILDLCSSWV-SHFPPGYKQDRIVGMGMNEEEL---KRNPVLTEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYL- 221 (309)
Q Consensus 148 ~~~~ILDiGcG~g-~~~~~~~~~~~v~giD~S~~~l---~~a~~~i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l- 221 (309)
.+.++||+|.|-. ..+....+...|+.+|+-|-.- .-+.. ..|++.|. ..-. +....+|.|+|.+.|-.-
T Consensus 821 ~~~~~lDlGTGPE~RiLsLiP~~~pvtm~D~RP~ae~~~~w~~~-T~f~~~Dy---L~~~~~~~~~~D~vt~i~SLGAA~ 896 (1289)
T 1ej6_A 821 DGDVVLDLGTGPEAKILELIPATSPVTCVDIRPTAQPSGCWNVR-TTFLELDY---LSDGWITGVRGDIVTCMLSLGAAA 896 (1289)
T ss_dssp TTCCEEEESCCSSCGGGGTSCTTSCEEEEESSCCCSCSTTBSSC-EEEEESCT---TSSSCGGGCCCSEEEECSCHHHHH
T ss_pred ccceEEEccCCCcceeeeecCCCCceEEecccCchhhhcccccc-ceeeEccc---cccceeecCCCcEEEEEeechhhh
Confidence 3789999999965 4555556677999999876422 22222 78999998 2222 234569999999888764
Q ss_pred ----CCHHHHHHHHHhhcccCc--EEEEEecCc
Q 021661 222 ----TKPIEVFKEMCQVLKPGG--LAIVSFSNR 248 (309)
Q Consensus 222 ----~d~~~~l~~i~rvLkpGG--~lii~~~~~ 248 (309)
.+..+.++++.+.+++.| .+++.+..+
T Consensus 897 A~a~~tl~~~~~q~l~~~~~~~~~~l~lQlNcp 929 (1289)
T 1ej6_A 897 AGKSMTFDAAFQQLIKVLSKSTANVVLVQVNCP 929 (1289)
T ss_dssp HHHTCCHHHHHHHHHHHHHTSCCSEEEEECCCC
T ss_pred hccCCcHHHHHHHHHHHHHhcCccEEEEEecCC
Confidence 367899999999999988 688876554
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.1 Score=47.39 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=40.1
Q ss_pred CcEEEecCCCCCCCC-CCCCceeEEEeccchh--------------ccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 189 TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVD--------------YLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 189 i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~--------------~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
..++++|.. +.++ +++++||+|++.--.. ++......|+++.++|||||.+++....
T Consensus 15 ~~ii~gD~~--~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d 86 (323)
T 1boo_A 15 GSMYIGDSL--ELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG 86 (323)
T ss_dssp EEEEESCHH--HHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ceEEeCcHH--HHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence 567788862 1233 4578899999863221 1224578999999999999999988664
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=90.23 E-value=0.23 Score=44.73 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=56.7
Q ss_pred CCCCCeEEEECC-C-cchhccC--CCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC-----CCCCCceeEEEecc
Q 021661 146 NTPGVSILDLCS-S-WVSHFPP--GYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDVITNVV 216 (309)
Q Consensus 146 ~~~~~~ILDiGc-G-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l-----p~~~~sfDlVis~~ 216 (309)
..++.+||-.|+ | .|..... ...+.+|+++|.+++.++.+++.-.-...|....+++ ....+.+|+|+.+.
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~ 222 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV 222 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECC
Confidence 356889999998 3 4433211 1246799999999988877644311123355210111 01124699999876
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.- ..++++.+.|++||.+++
T Consensus 223 g~-------~~~~~~~~~l~~~G~~v~ 242 (333)
T 1v3u_A 223 GG-------EFLNTVLSQMKDFGKIAI 242 (333)
T ss_dssp CH-------HHHHHHHTTEEEEEEEEE
T ss_pred Ch-------HHHHHHHHHHhcCCEEEE
Confidence 52 357888999999997764
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.88 E-value=0.28 Score=45.02 Aligned_cols=89 Identities=16% Similarity=0.087 Sum_probs=56.7
Q ss_pred CCCCCeEEEECCC-cchhc---cCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----CCCCCceeEEEe
Q 021661 146 NTPGVSILDLCSS-WVSHF---PPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~~---~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p~~~~sfDlVis 214 (309)
..++.+||-+|+| .|... ... .+. +|+++|.+++.++.+++. .+.+ .|... .++ ...++.+|+|+-
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~~Vi~~~~~~~~~~~a~~lGa~~v-i~~~~-~~~~~~~~~~~~gg~D~vid 264 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKV-CGASIIIAVDIVESRLELAKQLGATHV-INSKT-QDPVAAIKEITDGGVNFALE 264 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHH-HTCSEEEEEESCHHHHHHHHHHTCSEE-EETTT-SCHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEECCCHHHHHHHHHcCCCEE-ecCCc-cCHHHHHHHhcCCCCcEEEE
Confidence 3568999999997 34322 222 245 799999999988877653 2222 23210 111 111236999986
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+..- ...++++.+.|+|||.+++
T Consensus 265 ~~g~------~~~~~~~~~~l~~~G~iv~ 287 (371)
T 1f8f_A 265 STGS------PEILKQGVDALGILGKIAV 287 (371)
T ss_dssp CSCC------HHHHHHHHHTEEEEEEEEE
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEE
Confidence 5432 3578899999999998765
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=0.22 Score=45.05 Aligned_cols=91 Identities=11% Similarity=0.078 Sum_probs=57.7
Q ss_pred CCCCCeEEEECCC-cchhc---cCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC----CCCCceeEEEeccc
Q 021661 146 NTPGVSILDLCSS-WVSHF---PPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP----FEDNSFDVITNVVS 217 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp----~~~~sfDlVis~~v 217 (309)
..++.+||-+|+| .|... ... .+.+|+++|.+++-++.+++.---...|... .++. -..+.+|+|+-...
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~-~~~~~~~~~~~g~~d~vid~~g 241 (340)
T 3s2e_A 164 TRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDIDDAKLNLARRLGAEVAVNARD-TDPAAWLQKEIGGAHGVLVTAV 241 (340)
T ss_dssp CCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHcCCCEEEeCCC-cCHHHHHHHhCCCCCEEEEeCC
Confidence 3568999999997 34322 222 3669999999999888877642111233310 1110 01136898886532
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
-...++.+.+.|+|||.+++.
T Consensus 242 ------~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 242 ------SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp ------CHHHHHHHHHHEEEEEEEEEC
T ss_pred ------CHHHHHHHHHHhccCCEEEEe
Confidence 246788999999999987653
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=88.67 E-value=0.67 Score=42.25 Aligned_cols=95 Identities=11% Similarity=0.105 Sum_probs=63.3
Q ss_pred CCeEEEECCCcchhccC---CCCCCeEEEEeCCHHHHhh-------C----------------------CCCCcEEEecC
Q 021661 149 GVSILDLCSSWVSHFPP---GYKQDRIVGMGMNEEELKR-------N----------------------PVLTEYVVQDL 196 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~---~~~~~~v~giD~S~~~l~~-------a----------------------~~~i~~~~~D~ 196 (309)
...|+.+|||....... ..+...++-+|+ |++++. . ..+..++.+|+
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 57999999996643221 124668889998 665542 1 13467888888
Q ss_pred CCCCCCC--------C-CCCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEE-EEEecCc
Q 021661 197 NLNPKLP--------F-EDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLA-IVSFSNR 248 (309)
Q Consensus 197 ~~~~~lp--------~-~~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~l-ii~~~~~ 248 (309)
.+.. . ..+...++++-.++.+++. ..++|+.+.+.. |+|.+ +++..++
T Consensus 177 ---~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 177 ---NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp ---TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred ---CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 4321 1 3356789999999999963 467888888877 67754 5665443
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=88.52 E-value=0.66 Score=42.56 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=57.0
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC--------CCCCCceeEE
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL--------PFEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l--------p~~~~sfDlV 212 (309)
.++.+||=+|+| .|.. +... .+. +|+++|.+++-++.+++. .+. ..|... .++ ....+.+|+|
T Consensus 181 ~~g~~VlV~GaG~vG~~aiqlak~-~Ga~~Vi~~~~~~~~~~~a~~lGa~~-vi~~~~-~~~~~~i~~~~~~~~gg~Dvv 257 (370)
T 4ej6_A 181 KAGSTVAILGGGVIGLLTVQLARL-AGATTVILSTRQATKRRLAEEVGATA-TVDPSA-GDVVEAIAGPVGLVPGGVDVV 257 (370)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCHHHHHHHHHHTCSE-EECTTS-SCHHHHHHSTTSSSTTCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHcCCCE-EECCCC-cCHHHHHHhhhhccCCCCCEE
Confidence 458899999997 3432 2222 355 899999999988877654 221 223210 111 0223479999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+-+.. -...++.+.+.|++||.+++-
T Consensus 258 id~~G------~~~~~~~~~~~l~~~G~vv~~ 283 (370)
T 4ej6_A 258 IECAG------VAETVKQSTRLAKAGGTVVIL 283 (370)
T ss_dssp EECSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred EECCC------CHHHHHHHHHHhccCCEEEEE
Confidence 97543 135788999999999987653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=88.47 E-value=0.19 Score=45.66 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=56.5
Q ss_pred CCCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 146 NTPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
..++.+||-+|+| .|.. +... .+.+|+++|.|++-++.+++. .+.+..|. +.+. . .+|+|+-+..-.
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~---~~~~--~-~~D~vid~~g~~- 245 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVA-MGAEVSVFARNEHKKQDALSMGVKHFYTDP---KQCK--E-ELDFIISTIPTH- 245 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHH-TTCEEEEECSSSTTHHHHHHTTCSEEESSG---GGCC--S-CEEEEEECCCSC-
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHhcCCCeecCCH---HHHh--c-CCCEEEECCCcH-
Confidence 3568999999997 3432 2222 366999999999888877664 22222333 2222 2 699999654322
Q ss_pred cCCHHHHHHHHHhhcccCcEEEEE
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..++...+.|+|||.+++-
T Consensus 246 -----~~~~~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 246 -----YDLKDYLKLLTYNGDLALV 264 (348)
T ss_dssp -----CCHHHHHTTEEEEEEEEEC
T ss_pred -----HHHHHHHHHHhcCCEEEEE
Confidence 2577888999999977653
|
| >3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A | Back alignment and structure |
|---|
Probab=88.33 E-value=0.57 Score=48.91 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=72.1
Q ss_pred CCeEEEECCCcc-hhccCCCCCCeEEEEeCCHH---HHhhCCCCCcEEEecCCCCCCCC-CCCCceeEEEeccchhcc--
Q 021661 149 GVSILDLCSSWV-SHFPPGYKQDRIVGMGMNEE---ELKRNPVLTEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYL-- 221 (309)
Q Consensus 149 ~~~ILDiGcG~g-~~~~~~~~~~~v~giD~S~~---~l~~a~~~i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l-- 221 (309)
+..+||+|.|-. +.+....+...|+.+|.-|- |-.-..+..+|++.|. .... .....+|.+.|.+.|-.-
T Consensus 828 ~~~~lDLGTGPEcRiLsliP~~~pvtmvD~RP~ae~~~~w~~~~T~yi~~DY---l~~~~~~~~~~d~vtailSLGAA~a 904 (1299)
T 3iyl_W 828 LAHLLDLGTGPECRILSLIPPTLQVTMSDSRPCAELMASFDPALTAYVQGDY---STAAFWNGIRCDSATAIFTIGAAAA 904 (1299)
T ss_dssp GCSEEEETCCSSCSGGGSSCTTSCEEEEESSCCSSCGGGBCTTTEEEEESCS---SSGGGGSSCCCSEEEETTTHHHHHH
T ss_pred CCEEEEcCCCccceeeecCCCCCceEEEecCCccccccccccccceeEEecc---ccceeEecCCCCEEEEeeechhhhh
Confidence 579999999955 55566667789999998764 2233333378999998 3322 334679999999887754
Q ss_pred ---CCHHHHHHHHHhhcccCc--EEEEEecCc
Q 021661 222 ---TKPIEVFKEMCQVLKPGG--LAIVSFSNR 248 (309)
Q Consensus 222 ---~d~~~~l~~i~rvLkpGG--~lii~~~~~ 248 (309)
-+....++++.+..++.| ++++.+..+
T Consensus 905 ~a~~tl~~~l~~~l~~~~~~~v~~l~lQLN~P 936 (1299)
T 3iyl_W 905 AAGTDLIAFVQQLIPRIVAAGGTRMWLQLNTP 936 (1299)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTCSEEEECCCCC
T ss_pred hCCCcHHHHHHHHHHHHHhcCceEEEEEecCC
Confidence 378899999999999988 788876654
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=87.74 E-value=0.36 Score=43.82 Aligned_cols=89 Identities=12% Similarity=0.215 Sum_probs=56.0
Q ss_pred CCCCeEEEECCCcc--hhc---cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----CCCC-CceeEEEe
Q 021661 147 TPGVSILDLCSSWV--SHF---PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFED-NSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g--~~~---~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p~~~-~sfDlVis 214 (309)
.++.+||-+|+|.+ ... .....+.+|+++|.+++.++.+++. .+. ..|... .+. .... +.+|+|+.
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~d~vi~ 246 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY-VINASM-QDPLAEIRRITESKGVDAVID 246 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE-EEETTT-SCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCE-EecCCC-ccHHHHHHHHhcCCCceEEEE
Confidence 56889999999733 222 1222267999999999888776542 222 224311 111 0112 47999997
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+..- ...++.+.+.|+|+|.+++
T Consensus 247 ~~g~------~~~~~~~~~~l~~~G~iv~ 269 (347)
T 1jvb_A 247 LNNS------EKTLSVYPKALAKQGKYVM 269 (347)
T ss_dssp SCCC------HHHHTTGGGGEEEEEEEEE
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEE
Confidence 6542 3467888999999997765
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=87.72 E-value=0.49 Score=42.77 Aligned_cols=88 Identities=11% Similarity=0.094 Sum_probs=56.1
Q ss_pred CCCCeEEEECCC-cchhccC--CCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-----CCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSS-WVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-----FEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-----~~~~sfDlVis~~v 217 (309)
.++.+||-+|+| .|..... ...+.+|+++|.+++-++.+++. .+. ..|... .++. .. +.+|+|+.+..
T Consensus 163 ~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~-~~d~~~-~~~~~~~~~~~-~~~d~vid~~g 239 (339)
T 1rjw_A 163 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADL-VVNPLK-EDAAKFMKEKV-GGVHAAVVTAV 239 (339)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSE-EECTTT-SCHHHHHHHHH-SSEEEEEESSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCE-EecCCC-ccHHHHHHHHh-CCCCEEEECCC
Confidence 458899999996 4432211 12356999999999888876653 222 234411 1110 01 36999987653
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
. ...++.+.+.|+++|.+++
T Consensus 240 ~------~~~~~~~~~~l~~~G~~v~ 259 (339)
T 1rjw_A 240 S------KPAFQSAYNSIRRGGACVL 259 (339)
T ss_dssp C------HHHHHHHHHHEEEEEEEEE
T ss_pred C------HHHHHHHHHHhhcCCEEEE
Confidence 2 3567889999999997764
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.23 E-value=0.92 Score=41.11 Aligned_cols=89 Identities=9% Similarity=0.045 Sum_probs=55.9
Q ss_pred CCCCeEEEECCC-cchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC------CC---CCceeEE
Q 021661 147 TPGVSILDLCSS-WVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FE---DNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp------~~---~~sfDlV 212 (309)
.++.+||-+|+| .|... ... .+.+|+++|.+++-++.+++. .+ ...|.....++. .. .+.+|+|
T Consensus 167 ~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~~~~~~~~~~~lGa~-~~~~~~~~~~~~~~i~~~~~~~~g~g~D~v 244 (352)
T 1e3j_A 167 QLGTTVLVIGAGPIGLVSVLAAKA-YGAFVVCTARSPRRLEVAKNCGAD-VTLVVDPAKEEESSIIERIRSAIGDLPNVT 244 (352)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTCS-EEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCEEEEEcCCHHHHHHHHHhCCC-EEEcCcccccHHHHHHHHhccccCCCCCEE
Confidence 458899999987 34322 222 356799999999988877654 22 222331001110 01 2469999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+-+..- ...++...+.|+|||.+++
T Consensus 245 id~~g~------~~~~~~~~~~l~~~G~iv~ 269 (352)
T 1e3j_A 245 IDCSGN------EKCITIGINITRTGGTLML 269 (352)
T ss_dssp EECSCC------HHHHHHHHHHSCTTCEEEE
T ss_pred EECCCC------HHHHHHHHHHHhcCCEEEE
Confidence 865432 3467888999999998765
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=87.02 E-value=0.46 Score=42.76 Aligned_cols=89 Identities=16% Similarity=0.082 Sum_probs=56.7
Q ss_pred CCCCCeEEEECC-C-cchhcc--CCCCCCeEEEEeCCHHHHhhC-CCC-CcEEEecCCCCCCCC-----CCCCceeEEEe
Q 021661 146 NTPGVSILDLCS-S-WVSHFP--PGYKQDRIVGMGMNEEELKRN-PVL-TEYVVQDLNLNPKLP-----FEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGc-G-~g~~~~--~~~~~~~v~giD~S~~~l~~a-~~~-i~~~~~D~~~~~~lp-----~~~~sfDlVis 214 (309)
..++.+||-+|+ | .|.... ....+.+|+++|.+++-++.+ ++. .+. ..|... .++. ...+.+|+|+.
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~d~vi~ 224 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDG-AIDYKN-EDLAAGLKRECPKGIDVFFD 224 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSE-EEETTT-SCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCE-EEECCC-HHHHHHHHHhcCCCceEEEE
Confidence 356899999998 4 443221 112466999999999888877 443 222 233311 1110 11346999987
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+..- ..+..+.+.|++||.+++
T Consensus 225 ~~g~-------~~~~~~~~~l~~~G~iv~ 246 (336)
T 4b7c_A 225 NVGG-------EILDTVLTRIAFKARIVL 246 (336)
T ss_dssp SSCH-------HHHHHHHTTEEEEEEEEE
T ss_pred CCCc-------chHHHHHHHHhhCCEEEE
Confidence 6542 378889999999998765
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.80 E-value=0.38 Score=43.64 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=56.7
Q ss_pred CCCCCeEEEECCC--cchhccC--CCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-----CCCCceeEEEec
Q 021661 146 NTPGVSILDLCSS--WVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-----FEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiGcG--~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-----~~~~sfDlVis~ 215 (309)
..++.+||-+|++ .|..... ...+.+|+++|.+++.++.+++. .+ ...|....+++. ..++.+|+|+.+
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~~D~vi~~ 245 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGE-VFIDFTKEKDIVGAVLKATDGGAHGVINV 245 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCC-EEEETTTCSCHHHHHHHHHTSCEEEEEEC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCc-eEEecCccHhHHHHHHHHhCCCCCEEEEC
Confidence 3568999999983 4433211 12367999999998877766543 22 223542101111 011269999976
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
... ...++.+.+.|++||.+++
T Consensus 246 ~g~------~~~~~~~~~~l~~~G~iv~ 267 (347)
T 2hcy_A 246 SVS------EAAIEASTRYVRANGTTVL 267 (347)
T ss_dssp SSC------HHHHHHHTTSEEEEEEEEE
T ss_pred CCc------HHHHHHHHHHHhcCCEEEE
Confidence 542 3578899999999997754
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=86.26 E-value=0.73 Score=41.65 Aligned_cols=87 Identities=15% Similarity=0.031 Sum_probs=56.6
Q ss_pred CCCeEEEECCC-cchhc---cCCCCCC-eEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC-----CCCCceeEEEeccc
Q 021661 148 PGVSILDLCSS-WVSHF---PPGYKQD-RIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP-----FEDNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~~---~~~~~~~-~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp-----~~~~sfDlVis~~v 217 (309)
++.+||-+|+| .|... ... .+. +|+++|.+++-++.+++. .-...|... +++. .....+|+|+-+..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~-~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~-~~~~~~~~~~~~~g~D~vid~~g 240 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRA-SGAGPILVSDPNPYRLAFARPY-ADRLVNPLE-EDLLEVVRRVTGSGVEVLLEFSG 240 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHH-TTCCSEEEECSCHHHHGGGTTT-CSEEECTTT-SCHHHHHHHHHSSCEEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHh-HHhccCcCc-cCHHHHHHHhcCCCCCEEEECCC
Confidence 68899999996 34322 222 355 899999999998888765 222334411 1110 01236999986643
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
- ...+++..+.|+++|.+++
T Consensus 241 ~------~~~~~~~~~~l~~~G~iv~ 260 (343)
T 2dq4_A 241 N------EAAIHQGLMALIPGGEARI 260 (343)
T ss_dssp C------HHHHHHHHHHEEEEEEEEE
T ss_pred C------HHHHHHHHHHHhcCCEEEE
Confidence 2 3567889999999997654
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=85.99 E-value=0.87 Score=41.27 Aligned_cols=88 Identities=10% Similarity=0.040 Sum_probs=55.6
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC------CCCCceeEEEe
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp------~~~~sfDlVis 214 (309)
.++.+||=+|+| .|.. +... .+. +|+++|.+++-++.+++. .+. ..|... .++. .....+|+|+-
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~-~Ga~~Vi~~~~~~~~~~~~~~lGa~~-vi~~~~-~~~~~~v~~~t~g~g~D~v~d 241 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANH-LGAGRIFAVGSRKHCCDIALEYGATD-IINYKN-GDIVEQILKATDGKGVDKVVI 241 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHT-TTCSSEEEECCCHHHHHHHHHHTCCE-EECGGG-SCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEECCCHHHHHHHHHhCCce-EEcCCC-cCHHHHHHHHcCCCCCCEEEE
Confidence 568899999997 3422 2333 355 899999999888877654 221 223210 1110 12336999996
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
...- ...++++.+.|+|||.+++
T Consensus 242 ~~g~------~~~~~~~~~~l~~~G~~v~ 264 (352)
T 3fpc_A 242 AGGD------VHTFAQAVKMIKPGSDIGN 264 (352)
T ss_dssp CSSC------TTHHHHHHHHEEEEEEEEE
T ss_pred CCCC------hHHHHHHHHHHhcCCEEEE
Confidence 5432 2568889999999997764
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=85.98 E-value=0.83 Score=41.17 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=56.7
Q ss_pred CCCCCeEEEECC-C-cchhccC--CCCCCeEEEEeCCHHHHhhCC-CC-CcEEEecCCCCCCCC-----CCCCceeEEEe
Q 021661 146 NTPGVSILDLCS-S-WVSHFPP--GYKQDRIVGMGMNEEELKRNP-VL-TEYVVQDLNLNPKLP-----FEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGc-G-~g~~~~~--~~~~~~v~giD~S~~~l~~a~-~~-i~~~~~D~~~~~~lp-----~~~~sfDlVis 214 (309)
..++.+||-+|+ | .|..... ...+.+|+++|.+++.++.++ +. ... ..|.....++. ...+.+|+|+.
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~ 231 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDD-AFNYKEESDLTAALKRCFPNGIDIYFE 231 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSE-EEETTSCSCSHHHHHHHCTTCEEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCce-EEecCCHHHHHHHHHHHhCCCCcEEEE
Confidence 356889999998 4 4433211 123679999999998887765 32 222 23442101111 11246999987
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+..- ..++...+.|++||.+++
T Consensus 232 ~~g~-------~~~~~~~~~l~~~G~~v~ 253 (345)
T 2j3h_A 232 NVGG-------KMLDAVLVNMNMHGRIAV 253 (345)
T ss_dssp SSCH-------HHHHHHHTTEEEEEEEEE
T ss_pred CCCH-------HHHHHHHHHHhcCCEEEE
Confidence 6542 368889999999997765
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=85.89 E-value=1.6 Score=39.60 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=55.4
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCC---C---CCCC-CCCCceeEEE
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNL---N---PKLP-FEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~---~---~~lp-~~~~sfDlVi 213 (309)
.++.+||-+|+| .|.. +... .+. +|+++|.+++-++.+++. .+. ..|... . +.+. ...+.+|+|+
T Consensus 170 ~~g~~VlV~GaG~vG~~aiqlak~-~Ga~~Vi~~~~~~~~~~~a~~lGa~~-vi~~~~~~~~~~~~~i~~~~~~g~D~vi 247 (356)
T 1pl8_A 170 TLGHKVLVCGAGPIGMVTLLVAKA-MGAAQVVVTDLSATRLSKAKEIGADL-VLQISKESPQEIARKVEGQLGCKPEVTI 247 (356)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESCHHHHHHHHHTTCSE-EEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHhCCCE-EEcCcccccchHHHHHHHHhCCCCCEEE
Confidence 558899999997 3432 2222 355 899999999888877654 221 223210 0 0010 0114699998
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
-+..- ...+....++|+|||.+++
T Consensus 248 d~~g~------~~~~~~~~~~l~~~G~iv~ 271 (356)
T 1pl8_A 248 ECTGA------EASIQAGIYATRSGGTLVL 271 (356)
T ss_dssp ECSCC------HHHHHHHHHHSCTTCEEEE
T ss_pred ECCCC------hHHHHHHHHHhcCCCEEEE
Confidence 65431 3467888999999998765
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=85.64 E-value=3.2 Score=36.88 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=42.6
Q ss_pred CCCCeEEEEeCCHHHHhhCCCCCcEE-EecCCCCCCCCCCCCceeEEEecc----chhc-c--CC----HHHHHHHHHhh
Q 021661 167 YKQDRIVGMGMNEEELKRNPVLTEYV-VQDLNLNPKLPFEDNSFDVITNVV----SVDY-L--TK----PIEVFKEMCQV 234 (309)
Q Consensus 167 ~~~~~v~giD~S~~~l~~a~~~i~~~-~~D~~~~~~lp~~~~sfDlVis~~----vl~~-l--~d----~~~~l~~i~rv 234 (309)
.|+.+|+-+++.+. .++. ..|+. .|...+.+|+|++.. .-|| - .| ..-++.-+.++
T Consensus 176 ~p~k~v~wi~Pi~G--------At~~~~lDfg----~p~~~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~v 243 (320)
T 2hwk_A 176 VPGKMVDWLSDRPE--------ATFRARLDLG----IPGDVPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLH 243 (320)
T ss_dssp CTTSEEEEEESSTT--------CSEECCGGGC----SCTTSCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGG
T ss_pred cCCceeEeeccCCC--------ceeecccccC----CccccCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHh
Confidence 45667777777544 4555 67762 232336799999863 2333 1 12 23367778899
Q ss_pred cccCcEEEEEec
Q 021661 235 LKPGGLAIVSFS 246 (309)
Q Consensus 235 LkpGG~lii~~~ 246 (309)
|||||.+++-.-
T Consensus 244 LkPGGtfV~Kvy 255 (320)
T 2hwk_A 244 LNPGGTCVSIGY 255 (320)
T ss_dssp EEEEEEEEEEEC
T ss_pred cCCCceEEEEEe
Confidence 999998887533
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=84.41 E-value=0.83 Score=41.04 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=56.4
Q ss_pred CCCCCeEEEECC-C-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC------CCCCceeEEEec
Q 021661 146 NTPGVSILDLCS-S-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP------FEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiGc-G-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp------~~~~sfDlVis~ 215 (309)
..++.+||-+|+ | .|.... ....+.+|+++|.+++-++.+++.-.-...|... .++. .....+|+|+.+
T Consensus 146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~-~~~~~~~~~~~~~~g~D~vid~ 224 (334)
T 3qwb_A 146 VKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASK-EDILRQVLKFTNGKGVDASFDS 224 (334)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCC-chHHHHHHHHhCCCCceEEEEC
Confidence 356899999994 4 443221 1124679999999998888776542112233311 1110 123469999976
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
..- ..++.+.+.|+|||.+++
T Consensus 225 ~g~-------~~~~~~~~~l~~~G~iv~ 245 (334)
T 3qwb_A 225 VGK-------DTFEISLAALKRKGVFVS 245 (334)
T ss_dssp CGG-------GGHHHHHHHEEEEEEEEE
T ss_pred CCh-------HHHHHHHHHhccCCEEEE
Confidence 542 357788899999997765
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=84.40 E-value=2.1 Score=38.83 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=53.2
Q ss_pred CeEEEECCC-cchhc----c-CCCCCCe-EEEEeCCHH---HHhhCCCC-CcEEEecCCCCCCCC----CCCCceeEEEe
Q 021661 150 VSILDLCSS-WVSHF----P-PGYKQDR-IVGMGMNEE---ELKRNPVL-TEYVVQDLNLNPKLP----FEDNSFDVITN 214 (309)
Q Consensus 150 ~~ILDiGcG-~g~~~----~-~~~~~~~-v~giD~S~~---~l~~a~~~-i~~~~~D~~~~~~lp----~~~~sfDlVis 214 (309)
.+||=+|+| .|... . .. .+.+ |+++|.+++ -++.+++. .+.+ |... +++. . .+.+|+|+-
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~-~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v--~~~~-~~~~~i~~~-~gg~Dvvid 248 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDD-KGYENLYCLGRRDRPDPTIDIIEELDATYV--DSRQ-TPVEDVPDV-YEQMDFIYE 248 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCT-TCCCEEEEEECCCSSCHHHHHHHHTTCEEE--ETTT-SCGGGHHHH-SCCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHH-cCCcEEEEEeCCcccHHHHHHHHHcCCccc--CCCc-cCHHHHHHh-CCCCCEEEE
Confidence 899999997 33222 2 33 3555 999999987 77776654 3333 5421 1110 1 236999986
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+..- ...++++.+.|++||.+++
T Consensus 249 ~~g~------~~~~~~~~~~l~~~G~iv~ 271 (357)
T 2b5w_A 249 ATGF------PKHAIQSVQALAPNGVGAL 271 (357)
T ss_dssp CSCC------HHHHHHHHHHEEEEEEEEE
T ss_pred CCCC------hHHHHHHHHHHhcCCEEEE
Confidence 5431 2468889999999997765
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.33 E-value=1.3 Score=40.46 Aligned_cols=88 Identities=13% Similarity=0.064 Sum_probs=56.8
Q ss_pred CCCeEEEEC-CC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-----CCCCCceeEEEecc
Q 021661 148 PGVSILDLC-SS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-----PFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiG-cG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-----p~~~~sfDlVis~~ 216 (309)
++.+||=+| +| .|.. +.....+.+|+++|.+++-++.+++. .+. ..|.. +++ ....+.+|+|+-+.
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~-vi~~~--~~~~~~v~~~~~~g~Dvvid~~ 247 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHH-VIDHS--KPLAAEVAALGLGAPAFVFSTT 247 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSE-EECTT--SCHHHHHHTTCSCCEEEEEECS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCE-EEeCC--CCHHHHHHHhcCCCceEEEECC
Confidence 578999998 66 4432 22222467999999999888877654 222 22321 111 12335799998754
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
. -...++++.+.|+|||.+++-
T Consensus 248 g------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 248 H------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp C------HHHHHHHHHHHSCTTCEEEEC
T ss_pred C------chhhHHHHHHHhcCCCEEEEE
Confidence 3 235788999999999987653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=84.32 E-value=0.59 Score=42.24 Aligned_cols=89 Identities=10% Similarity=0.143 Sum_probs=57.6
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-----C-CCCceeEEEec
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-----F-EDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-----~-~~~sfDlVis~ 215 (309)
.++.+||-+|+| .|.. +.+...+.+|+++|.+++-++.+++. .+.+ .|.. .++. . ....+|+|+-+
T Consensus 170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~-i~~~--~~~~~~v~~~t~g~g~d~v~d~ 246 (345)
T 3jv7_A 170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAA-VKSG--AGAADAIRELTGGQGATAVFDF 246 (345)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEE-EECS--TTHHHHHHHHHGGGCEEEEEES
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEE-EcCC--CcHHHHHHHHhCCCCCeEEEEC
Confidence 458899999997 3432 22233467999999999988887764 2222 2221 1110 0 12369999865
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..- ...++.+.+.|++||.+++-
T Consensus 247 ~G~------~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 247 VGA------QSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp SCC------HHHHHHHHHHEEEEEEEEEC
T ss_pred CCC------HHHHHHHHHHHhcCCEEEEE
Confidence 432 35788999999999987653
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.09 E-value=0.69 Score=42.10 Aligned_cols=89 Identities=18% Similarity=0.085 Sum_probs=55.9
Q ss_pred CCCCCeEEEECC-C-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC------CCCCceeEEEe
Q 021661 146 NTPGVSILDLCS-S-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGc-G-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp------~~~~sfDlVis 214 (309)
..++.+||-.|+ | .|.... ....+.+|+++|.+++.++.+++. .+ ...|... .+.. .....+|+|+.
T Consensus 168 ~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~-~~~d~~~-~~~~~~~~~~~~~~~~D~vi~ 245 (351)
T 1yb5_A 168 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH-EVFNHRE-VNYIDKIKKYVGEKGIDIIIE 245 (351)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS-EEEETTS-TTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCC-EEEeCCC-chHHHHHHHHcCCCCcEEEEE
Confidence 356889999998 4 443221 112367999999999887766543 22 2234411 1110 11236999997
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+..- ..+....+.|++||.+++
T Consensus 246 ~~G~-------~~~~~~~~~l~~~G~iv~ 267 (351)
T 1yb5_A 246 MLAN-------VNLSKDLSLLSHGGRVIV 267 (351)
T ss_dssp SCHH-------HHHHHHHHHEEEEEEEEE
T ss_pred CCCh-------HHHHHHHHhccCCCEEEE
Confidence 7542 357788999999997765
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=84.08 E-value=0.54 Score=41.83 Aligned_cols=94 Identities=17% Similarity=-0.084 Sum_probs=62.6
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC------CcEEEecCCCCCCCC---CCCCceeEEEeccch
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLP---FEDNSFDVITNVVSV 218 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~------i~~~~~D~~~~~~lp---~~~~sfDlVis~~vl 218 (309)
+..+||+=+|+|... ....++.+++.+|.++..++.-+++ ++++..|.. ..+. -+...||+|++---.
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~--~~L~~l~~~~~~fdLVfiDPPY 169 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGV--SKLNALLPPPEKRGLIFIDPSY 169 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHH--HHHHHHCSCTTSCEEEEECCCC
T ss_pred CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHH--HHHHHhcCCCCCccEEEECCCC
Confidence 457899977766433 2222457999999999998876665 566777741 1121 233469999997766
Q ss_pred hccCCHHHHHHHHHh--hcccCcEEEEE
Q 021661 219 DYLTKPIEVFKEMCQ--VLKPGGLAIVS 244 (309)
Q Consensus 219 ~~l~d~~~~l~~i~r--vLkpGG~lii~ 244 (309)
+.-.+..++++.+.+ .+.|+|.+++=
T Consensus 170 e~k~~~~~vl~~L~~~~~r~~~Gi~v~W 197 (283)
T 2oo3_A 170 ERKEEYKEIPYAIKNAYSKFSTGLYCVW 197 (283)
T ss_dssp CSTTHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCcHHHHHHHHHHHhCccCCCeEEEEE
Confidence 544456677776665 45689988763
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=84.05 E-value=0.36 Score=44.41 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=54.4
Q ss_pred CCCCCeEEEECCC-cchhc---cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCC---CCCCCCCCceeEEEeccc
Q 021661 146 NTPGVSILDLCSS-WVSHF---PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN---PKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~---~~lp~~~~sfDlVis~~v 217 (309)
..++.+||-+|+| .|... ... .+.+|+++|.|++-++.+++. .+. ..|.... ..+ . +.+|+|+-...
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~-~Ga~Vi~~~~~~~~~~~a~~lGa~~-vi~~~~~~~~~~~--~-~g~Dvvid~~g 266 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHA-MGAHVVAFTTSEAKREAAKALGADE-VVNSRNADEMAAH--L-KSFDFILNTVA 266 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHTCSE-EEETTCHHHHHTT--T-TCEEEEEECCS
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCHHHHHHHHHcCCcE-EeccccHHHHHHh--h-cCCCEEEECCC
Confidence 3568999999997 34322 222 366899999999888776553 221 1222100 111 1 46999986543
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
-. ..++++.+.|+|+|.+++
T Consensus 267 ~~------~~~~~~~~~l~~~G~iv~ 286 (369)
T 1uuf_A 267 AP------HNLDDFTTLLKRDGTMTL 286 (369)
T ss_dssp SC------CCHHHHHTTEEEEEEEEE
T ss_pred CH------HHHHHHHHHhccCCEEEE
Confidence 21 246778899999997764
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=83.61 E-value=0.6 Score=42.92 Aligned_cols=49 Identities=12% Similarity=-0.033 Sum_probs=36.3
Q ss_pred CCCeEEEECCCcchhccCCC---CCCeEEEEeCCHHHHhhCC-----CCCcEEEecC
Q 021661 148 PGVSILDLCSSWVSHFPPGY---KQDRIVGMGMNEEELKRNP-----VLTEYVVQDL 196 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~~---~~~~v~giD~S~~~l~~a~-----~~i~~~~~D~ 196 (309)
++..|||||.|.|....... ...+|+++++.+.++...+ .+++++.+|+
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~ 114 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP 114 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCc
Confidence 35899999999986543222 2458999999998876432 3588899998
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=83.60 E-value=0.38 Score=43.50 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=53.7
Q ss_pred CCCCCeEEEECCCc--chhcc--CCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC------CCCCceeEEEe
Q 021661 146 NTPGVSILDLCSSW--VSHFP--PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG~--g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp------~~~~sfDlVis 214 (309)
..++.+||-+|+|. |.... ....+.+|+++|.+++-++.+++. .+. ..|... .++. .....+|+|+.
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~-~~~~~~-~~~~~~~~~~~~~~g~Dvvid 219 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAY-VIDTST-APLYETVMELTNGIGADAAID 219 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE-EEETTT-SCHHHHHHHHTTTSCEEEEEE
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcE-EEeCCc-ccHHHHHHHHhCCCCCcEEEE
Confidence 46689999999873 43221 112367999999998877766553 222 223310 1110 12346999997
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+..-. .+.+..+.|++||.+++-
T Consensus 220 ~~g~~-------~~~~~~~~l~~~G~iv~~ 242 (340)
T 3gms_A 220 SIGGP-------DGNELAFSLRPNGHFLTI 242 (340)
T ss_dssp SSCHH-------HHHHHHHTEEEEEEEEEC
T ss_pred CCCCh-------hHHHHHHHhcCCCEEEEE
Confidence 65432 223445899999977653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=83.44 E-value=0.76 Score=41.97 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=55.3
Q ss_pred CCCCeEEEEC-CC-cchhccC--CCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-----CCCCceeEEEecc
Q 021661 147 TPGVSILDLC-SS-WVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-----FEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiG-cG-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-----~~~~sfDlVis~~ 216 (309)
.++.+||-+| +| .|..... ...+.+|+++|.+++-++.+++. .+. ..|... +++. ...+.+|+|+.+.
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~-~~~~~~-~~~~~~~~~~~~~g~D~vid~~ 239 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDR-PINYKT-EPVGTVLKQEYPEGVDVVYESV 239 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE-EEETTT-SCHHHHHHHHCTTCEEEEEECS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcE-EEecCC-hhHHHHHHHhcCCCCCEEEECC
Confidence 4588999999 45 4533211 12366999999998877776553 222 223310 1110 1124699999765
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.- ..++.+.+.|+++|.+++
T Consensus 240 g~-------~~~~~~~~~l~~~G~iv~ 259 (362)
T 2c0c_A 240 GG-------AMFDLAVDALATKGRLIV 259 (362)
T ss_dssp CT-------HHHHHHHHHEEEEEEEEE
T ss_pred CH-------HHHHHHHHHHhcCCEEEE
Confidence 41 578889999999997765
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.18 E-value=1.2 Score=40.63 Aligned_cols=91 Identities=13% Similarity=0.198 Sum_probs=56.8
Q ss_pred CCCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCC-CCCCC-----CCCCceeEEE
Q 021661 146 NTPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNL-NPKLP-----FEDNSFDVIT 213 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~-~~~lp-----~~~~sfDlVi 213 (309)
..++.+||-+|+| .|.. +.+. .+. +|+++|.|++-++.+++. .+. ..|... .+++. ...+.+|+|+
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~~Vi~~~~~~~~~~~~~~lGa~~-vi~~~~~~~~~~~~~~~~~~~g~D~vi 267 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHS-AGAKRIIAVDLNPDKFEKAKVFGATD-FVNPNDHSEPISQVLSKMTNGGVDFSL 267 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCCE-EECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCHHHHHHHHHhCCce-EEeccccchhHHHHHHHHhCCCCCEEE
Confidence 3568899999987 3432 2222 355 899999999888877654 222 233310 00110 1123699998
Q ss_pred eccchhccCCHHHHHHHHHhhcccC-cEEEEE
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPG-GLAIVS 244 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpG-G~lii~ 244 (309)
-+..- ...++.+.+.|+|| |.+++-
T Consensus 268 d~~g~------~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 268 ECVGN------VGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp ECSCC------HHHHHHHHHTBCTTTCEEEEC
T ss_pred ECCCC------HHHHHHHHHHhhcCCcEEEEE
Confidence 65432 35688999999999 977653
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=82.94 E-value=2.2 Score=38.29 Aligned_cols=91 Identities=11% Similarity=0.103 Sum_probs=56.2
Q ss_pred CCCCeEEEECCCcc-hh---ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC------CCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWV-SH---FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP------FEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g-~~---~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp------~~~~sfDlVis~~ 216 (309)
.++.+||=+|+|.. .. ......+.+|+++|.+++-++.+++.---...|... .+.. .....+|.++...
T Consensus 162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~-~~~~~~v~~~t~g~g~d~~~~~~ 240 (348)
T 4eez_A 162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGD-VNPVDEIKKITGGLGVQSAIVCA 240 (348)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-C-CCHHHHHHHHTTSSCEEEEEECC
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCC-CCHHHHhhhhcCCCCceEEEEec
Confidence 56889999999833 21 222345779999999999888776652222233310 1110 1223467666543
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+ -...+....+.|+++|.+++.
T Consensus 241 ~------~~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 241 V------ARIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp S------CHHHHHHHHHTEEEEEEEEEC
T ss_pred c------CcchhheeheeecCCceEEEE
Confidence 2 246788899999999977553
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=82.27 E-value=1.4 Score=39.85 Aligned_cols=87 Identities=13% Similarity=0.094 Sum_probs=55.3
Q ss_pred CCCeEEEECCC-cchhc---cCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC------CCCCceeEEEec
Q 021661 148 PGVSILDLCSS-WVSHF---PPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~~---~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp------~~~~sfDlVis~ 215 (309)
++.+||-+|+| .|... ... .+. +|+++|.+++-++.+++. .+. ..|... +++. .....+|+|+.+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~-~Ga~~Vi~~~~~~~~~~~~~~~Ga~~-~~~~~~-~~~~~~v~~~~~g~g~D~vid~ 243 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKA-SGAYPVIVSEPSDFRRELAKKVGADY-VINPFE-EDVVKEVMDITDGNGVDVFLEF 243 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH-TTCCSEEEECSCHHHHHHHHHHTCSE-EECTTT-SCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCHHHHHHHHHhCCCE-EECCCC-cCHHHHHHHHcCCCCCCEEEEC
Confidence 68899999997 34322 222 355 899999999888776543 222 223310 1110 112369999876
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
... ...++.+.+.|+++|.+++
T Consensus 244 ~g~------~~~~~~~~~~l~~~G~iv~ 265 (348)
T 2d8a_A 244 SGA------PKALEQGLQAVTPAGRVSL 265 (348)
T ss_dssp SCC------HHHHHHHHHHEEEEEEEEE
T ss_pred CCC------HHHHHHHHHHHhcCCEEEE
Confidence 532 3567889999999997765
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=82.15 E-value=0.29 Score=44.36 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=55.0
Q ss_pred CCCeEEEECCC-cchh---ccCC-CCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCC----CCCCCCCCCceeEEEeccc
Q 021661 148 PGVSILDLCSS-WVSH---FPPG-YKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNL----NPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG-~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~----~~~lp~~~~sfDlVis~~v 217 (309)
++.+||-+|+| .|.. +... .++.+|+++|.|++-++.+++. .+.+ .|... ...+. ....+|+|+-+..
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~-~g~g~D~vid~~g 247 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYV-SEMKDAESLINKLT-DGLGASIAIDLVG 247 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEE-ECHHHHHHHHHHHH-TTCCEEEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEE-eccccchHHHHHhh-cCCCccEEEECCC
Confidence 48899999997 3422 1222 2367999999999888776653 2211 12200 01111 1236999997653
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
- ...++.+.+.|+|||.+++
T Consensus 248 ~------~~~~~~~~~~l~~~G~iv~ 267 (344)
T 2h6e_A 248 T------EETTYNLGKLLAQEGAIIL 267 (344)
T ss_dssp C------HHHHHHHHHHEEEEEEEEE
T ss_pred C------hHHHHHHHHHhhcCCEEEE
Confidence 2 3478889999999997765
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=81.92 E-value=1.4 Score=40.29 Aligned_cols=90 Identities=10% Similarity=0.158 Sum_probs=56.1
Q ss_pred CCCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCC-CCCC-----CCCCCceeEEE
Q 021661 146 NTPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNL-NPKL-----PFEDNSFDVIT 213 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~-~~~l-----p~~~~sfDlVi 213 (309)
..++.+||-+|+| .|.. +... .+. +|+++|.+++-++.+++. .+. ..|... .+++ ...++.+|+|+
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~~Vi~~~~~~~~~~~~~~lGa~~-vi~~~~~~~~~~~~~~~~~~~g~D~vi 266 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKA-AGAARIIGVDINKDKFAKAKEVGATE-CVNPQDYKKPIQEVLTEMSNGGVDFSF 266 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHH-TTCSEEEEECSCGGGHHHHHHTTCSE-EECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHHhCCce-EecccccchhHHHHHHHHhCCCCcEEE
Confidence 3568899999987 3432 2222 355 899999999888877654 222 223310 0011 01123699998
Q ss_pred eccchhccCCHHHHHHHHHhhcccC-cEEEE
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPG-GLAIV 243 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpG-G~lii 243 (309)
-+..- ...++...+.|++| |.+++
T Consensus 267 d~~g~------~~~~~~~~~~l~~~~G~iv~ 291 (374)
T 2jhf_A 267 EVIGR------LDTMVTALSCCQEAYGVSVI 291 (374)
T ss_dssp ECSCC------HHHHHHHHHHBCTTTCEEEE
T ss_pred ECCCC------HHHHHHHHHHhhcCCcEEEE
Confidence 65432 35688899999999 97765
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=81.85 E-value=1.1 Score=40.90 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=56.2
Q ss_pred CCCCCeEEEECCC-cchhc---cCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCC-CCCC-----CCCCCceeEEE
Q 021661 146 NTPGVSILDLCSS-WVSHF---PPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNL-NPKL-----PFEDNSFDVIT 213 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~~---~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~-~~~l-----p~~~~sfDlVi 213 (309)
..++.+||-+|+| .|... .+.. +. +|+++|.|++-++.+++. .+. ..|... .+++ ....+.+|+|+
T Consensus 189 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~-vi~~~~~~~~~~~~i~~~t~gg~Dvvi 266 (373)
T 1p0f_A 189 VTPGSTCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFPKAIELGATE-CLNPKDYDKPIYEVICEKTNGGVDYAV 266 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHHHHHHTTCSE-EECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHHHHHcCCcE-EEecccccchHHHHHHHHhCCCCCEEE
Confidence 3568899999997 34322 2222 45 899999999888877654 222 223310 0011 01123699998
Q ss_pred eccchhccCCHHHHHHHHHhhcccC-cEEEE
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPG-GLAIV 243 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpG-G~lii 243 (309)
-...- ...+++..+.|+++ |.+++
T Consensus 267 d~~g~------~~~~~~~~~~l~~~~G~iv~ 291 (373)
T 1p0f_A 267 ECAGR------IETMMNALQSTYCGSGVTVV 291 (373)
T ss_dssp ECSCC------HHHHHHHHHTBCTTTCEEEE
T ss_pred ECCCC------HHHHHHHHHHHhcCCCEEEE
Confidence 65432 35688899999999 97765
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.32 E-value=1 Score=35.51 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCCCCceeEEEeccchh--ccCCHHHHHHHHHhhcccCcEEEE
Q 021661 203 PFEDNSFDVITNVVSVD--YLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~--~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.+++++||+|+...--. +..=+..++..+.+.|||||.|.-
T Consensus 54 sLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~g 96 (136)
T 2km1_A 54 TLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLIG 96 (136)
T ss_dssp CCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred cCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEEe
Confidence 35678999998654222 233358999999999999998865
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.29 E-value=0.77 Score=41.50 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=56.0
Q ss_pred CCCCCeEEEECC-C-cchhccC--CCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC------CCCCceeEEEe
Q 021661 146 NTPGVSILDLCS-S-WVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGc-G-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp------~~~~sfDlVis 214 (309)
..++.+||-+|+ | .|..... ...+.+|+++|.+++.++.+++. .+. ..|... .++. .....+|+|+.
T Consensus 164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~-~~d~~~-~~~~~~~~~~~~~~~~d~vi~ 241 (343)
T 2eih_A 164 VRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADE-TVNYTH-PDWPKEVRRLTGGKGADKVVD 241 (343)
T ss_dssp CCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSE-EEETTS-TTHHHHHHHHTTTTCEEEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCE-EEcCCc-ccHHHHHHHHhCCCCceEEEE
Confidence 356899999998 3 4433211 12367999999999888776542 222 234411 1110 11246999997
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+.. . ..++.+.+.|+++|.+++
T Consensus 242 ~~g-~------~~~~~~~~~l~~~G~~v~ 263 (343)
T 2eih_A 242 HTG-A------LYFEGVIKATANGGRIAI 263 (343)
T ss_dssp SSC-S------SSHHHHHHHEEEEEEEEE
T ss_pred CCC-H------HHHHHHHHhhccCCEEEE
Confidence 764 2 257788899999997765
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=81.06 E-value=1.5 Score=40.05 Aligned_cols=90 Identities=14% Similarity=0.104 Sum_probs=56.2
Q ss_pred CCCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCC-CcEEEecCCCC-CCCC-----CCCCceeEEE
Q 021661 146 NTPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVL-TEYVVQDLNLN-PKLP-----FEDNSFDVIT 213 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~-i~~~~~D~~~~-~~lp-----~~~~sfDlVi 213 (309)
..++.+||-+|+| .|.. +.+.. +. +|+++|.|++-++.+++. .+. ..|.... +++. ...+.+|+|+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~lGa~~-vi~~~~~~~~~~~~v~~~~~~g~Dvvi 270 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKFPKAKALGATD-CLNPRELDKPVQDVITELTAGGVDYSL 270 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGHHHHHHTTCSE-EECGGGCSSCHHHHHHHHHTSCBSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHHHHHhCCcE-EEccccccchHHHHHHHHhCCCccEEE
Confidence 3568899999997 3432 22223 55 899999999888877654 222 2233100 0110 1123699998
Q ss_pred eccchhccCCHHHHHHHHHhhcccC-cEEEE
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPG-GLAIV 243 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpG-G~lii 243 (309)
-+..- ...++++.+.|++| |.+++
T Consensus 271 d~~G~------~~~~~~~~~~l~~~~G~iv~ 295 (376)
T 1e3i_A 271 DCAGT------AQTLKAAVDCTVLGWGSCTV 295 (376)
T ss_dssp ESSCC------HHHHHHHHHTBCTTTCEEEE
T ss_pred ECCCC------HHHHHHHHHHhhcCCCEEEE
Confidence 65432 35688999999999 97764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=80.78 E-value=2.1 Score=39.20 Aligned_cols=91 Identities=11% Similarity=0.188 Sum_probs=57.2
Q ss_pred CCCCCeEEEECCC-cchh---ccCCCCCC-eEEEEeCCHHHHhhCCCCCcEEEecCCC-CCCC-----CCCCCceeEEEe
Q 021661 146 NTPGVSILDLCSS-WVSH---FPPGYKQD-RIVGMGMNEEELKRNPVLTEYVVQDLNL-NPKL-----PFEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~---~~~~~~~~-~v~giD~S~~~l~~a~~~i~~~~~D~~~-~~~l-----p~~~~sfDlVis 214 (309)
..++.+||=+|+| .|.. +... .+. +|+++|.+++-++.+++.---...|... ..++ ...++.+|+|+-
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~-~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid 269 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKT-AGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFE 269 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHH-HTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-cCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEE
Confidence 3568899999997 3432 2222 244 8999999999988887652111233310 0111 012347999986
Q ss_pred ccchhccCCHHHHHHHHHhhcccC-cEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPG-GLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpG-G~lii 243 (309)
+.. -...+..+.+.|++| |.+++
T Consensus 270 ~~g------~~~~~~~~~~~l~~g~G~iv~ 293 (378)
T 3uko_A 270 CIG------NVSVMRAALECCHKGWGTSVI 293 (378)
T ss_dssp CSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred CCC------CHHHHHHHHHHhhccCCEEEE
Confidence 543 235788999999997 97765
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=80.11 E-value=0.61 Score=41.81 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=56.5
Q ss_pred CCCCCeEEEEC-CC-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC------CCCCceeEEEec
Q 021661 146 NTPGVSILDLC-SS-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP------FEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiG-cG-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp------~~~~sfDlVis~ 215 (309)
..++.+||-+| +| .|.... ....+.+|+++|.+++-++.+++.-.-...|... .++. .....+|+|+.+
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~-~~~~~~~~~~~~~~g~Dvvid~ 216 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSH-EDVAKRVLELTDGKKCPVVYDG 216 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTCCEEEEEES
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCC-ccHHHHHHHHhCCCCceEEEEC
Confidence 45689999998 45 443221 1123679999999998888776531112223310 1110 123469999976
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..- ..+....+.|++||.+++-
T Consensus 217 ~g~-------~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 217 VGQ-------DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp SCG-------GGHHHHHTTEEEEEEEEEC
T ss_pred CCh-------HHHHHHHHHhcCCCEEEEE
Confidence 542 3577888999999977653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 309 | ||||
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 6e-07 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 2e-06 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 2e-04 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 2e-04 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 5e-04 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 6e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.001 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 0.001 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 0.002 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 0.003 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.004 |
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 47.5 bits (111), Expect = 6e-07
Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 3/136 (2%)
Query: 116 FYET--PRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDL-CSSWVSHFPPGYKQDRI 172
FY+ + + + P + +LDL + + +
Sbjct: 8 FYDRIARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEV 67
Query: 173 VGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMC 232
V + ++E L+ V + V+ + Y+ + F E+
Sbjct: 68 VLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIR 127
Query: 233 QVLKPGGLAIVSFSNR 248
+VL P GL I + N
Sbjct: 128 RVLVPDGLLIATVDNF 143
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 2e-06
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 1/62 (1%)
Query: 193 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFW 251
+ E +D I + + Y+ K +L + I+ S W
Sbjct: 108 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGW 167
Query: 252 TK 253
K
Sbjct: 168 DK 169
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 40.1 bits (92), Expect = 2e-04
Identities = 26/175 (14%), Positives = 54/175 (30%), Gaps = 15/175 (8%)
Query: 103 EDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH 162
E + E D+++ V I + + + E +LDL
Sbjct: 3 ELYTLLAEYYDTIYRRRIERV----KAEIDFVEEIFKEDAKR---EVRRVLDLACGTGIP 55
Query: 163 FPPGYKQDR----IVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218
++ + +R ++ L + N FD +T S
Sbjct: 56 TLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFST 115
Query: 219 DYLTKPIE---VFKEMCQVLKPGGLAIVSFSNRCFWTK-AISIWTSTGDADHVMI 269
+ +F ++ + LKPGG+ I F + + +W + ++I
Sbjct: 116 IMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVI 170
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 39.7 bits (91), Expect = 2e-04
Identities = 31/139 (22%), Positives = 55/139 (39%), Gaps = 7/139 (5%)
Query: 116 FYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDL-CSSWVSHFPPGYKQDRIVG 174
+Y T I+ + + + +LDL C F +VG
Sbjct: 5 YYRVFPTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVG 64
Query: 175 MGMNEE----ELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK--PIEVF 228
+ ++E+ + V + KL FED +FD + + S+ + +VF
Sbjct: 65 VDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVF 124
Query: 229 KEMCQVLKPGGLAIVSFSN 247
KE+ +VLKP G I+ F++
Sbjct: 125 KEVRRVLKPSGKFIMYFTD 143
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.8 bits (89), Expect = 5e-04
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 196 LNLNPKLPFEDNSFDVITNVVSVDYLTKPI-------EVFKEMCQVLKPGGLAIVSFSNR 248
L L+ +P D VI S +L K + +++PGGL ++ N
Sbjct: 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 177
Query: 249 CF 250
+
Sbjct: 178 DY 179
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 38.4 bits (88), Expect = 6e-04
Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 17/146 (11%)
Query: 148 PGVSILDLCS---SWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPF 204
++LD+ + F + G+ +++ +K V + + +LPF
Sbjct: 84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPF 143
Query: 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGG-LAIVSFSNRCFWTKAISIWTSTGD 263
D S D I + + +E+ +V+KPGG + + R I+
Sbjct: 144 SDTSMDAIIRIYA-------PCKAEELARVVKPGGWVITATPGPRHLMELKGLIY----- 191
Query: 264 ADHVMIVGAYFHYAGGYEPPQAVDIS 289
+ V + + G+ Q+ ++
Sbjct: 192 -NEVHLHAPHAEQLEGFTLQQSAELC 216
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.6 bits (86), Expect = 0.001
Identities = 27/161 (16%), Positives = 51/161 (31%), Gaps = 13/161 (8%)
Query: 147 TPGVSILDLCSSW-------VSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLN 199
T V I+D + + P G K I E + L Y + L +
Sbjct: 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD 85
Query: 200 PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWT 259
++ +D+ + ++T P + ++M +K GG I + ++ +
Sbjct: 86 ATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW-----ISNMAS 140
Query: 260 STGDADHVMIVGAYFHYAGGYEPP-QAVDISPNPGRSDPMY 299
D + +E Q N G P+Y
Sbjct: 141 YLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIY 181
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.001
Identities = 19/163 (11%), Positives = 47/163 (28%), Gaps = 16/163 (9%)
Query: 103 EDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPS-NTPGVSILDLCSSW-- 159
E+ + + + + + P + Y + ++ G +L++
Sbjct: 7 ENCSPAWGAAPAAYDAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAI 66
Query: 160 VSHFPPGYKQDRIVGMGMNEEELKR-----------NPVLTEYVVQDLNLNPKLPFEDNS 208
+ D + N+ +R L P F+
Sbjct: 67 AASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGIL 126
Query: 209 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFW 251
+D + + + ++LKPGG ++++ N W
Sbjct: 127 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGG--VLTYCNLTSW 167
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.002
Identities = 22/199 (11%), Positives = 45/199 (22%), Gaps = 47/199 (23%)
Query: 100 FKEEDFQRFDESPDSLF--YETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCS 157
F D + P Y + + + + + F P G +++D+ S
Sbjct: 1 FTGGDEYQKHFLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGS 60
Query: 158 SW--VSHFPPGYKQDRIVGMGMNEEELK-------------------------------- 183
I + +
Sbjct: 61 GPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRW 120
Query: 184 -------RNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK----PIEVFKEMC 232
R V NP P D + +++++ +
Sbjct: 121 EEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLA 180
Query: 233 QVLKPGGLAIVSFSNRCFW 251
+LKPGG + + + R
Sbjct: 181 SLLKPGGHLVTTVTLRLPS 199
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 36.1 bits (82), Expect = 0.003
Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 7/145 (4%)
Query: 136 KYYSEVFPPSNTPGVSILDLCS---SWVSHFPPGYKQDRIVGMGMNEEELKRNPVLTEYV 192
+ F P PG ++L+L S + S + I + +EE + +
Sbjct: 9 PFMVRAFTPFFRPG-NLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDG 65
Query: 193 VQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMC-QVLKPGGLAIVSFSNRCFW 251
+ ++ + +D I ++++ P+ + K + L GG + N
Sbjct: 66 ITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAV 125
Query: 252 TKAISIWTSTGDADHVMIVGAYFHY 276
++ I++ + + + H
Sbjct: 126 SRQIAVKMGIISHNSAVTEAEFAHG 150
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.0 bits (82), Expect = 0.004
Identities = 22/199 (11%), Positives = 47/199 (23%), Gaps = 52/199 (26%)
Query: 103 EDFQRFDESPDS---LFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVSILDLCSS- 158
+QRF+ P + Y PR + + ++ F G +++D+ S
Sbjct: 8 SAYQRFE--PRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGP 65
Query: 159 ------------------------------WVSHFPPGYKQDRIVGMGMNEEELKRNPVL 188
W+ P + E
Sbjct: 66 TVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQD 125
Query: 189 TE------------YVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT----KPIEVFKEMC 232
E V D + + ++ ++ +
Sbjct: 126 KERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHIT 185
Query: 233 QVLKPGGLAIVSFSNRCFW 251
+L+PGG ++ + W
Sbjct: 186 TLLRPGGHLLLIGALEESW 204
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 309 | |||
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.88 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.84 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.83 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.83 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.82 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.81 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.79 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.77 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.76 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.76 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.76 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.74 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.72 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.71 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.71 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.71 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.69 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.69 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.68 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.65 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.64 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.64 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.62 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.61 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.6 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.6 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.59 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.58 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.56 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.55 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.55 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.55 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.54 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.53 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.53 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.52 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.46 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.4 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.39 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.39 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.38 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.36 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.31 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.31 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.22 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.2 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.17 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.17 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.16 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.15 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.15 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.06 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.03 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.98 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.89 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.89 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.8 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.8 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.79 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.78 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.78 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.75 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.69 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.67 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.63 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.56 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.54 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.54 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.53 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.47 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.44 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.42 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.38 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.37 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.28 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.27 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.24 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.22 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.21 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.12 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.11 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.03 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.01 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.0 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.97 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.94 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.82 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.65 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.64 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.62 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.61 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.6 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.53 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.52 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.38 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.01 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.91 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 96.89 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.06 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 95.97 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.93 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 95.3 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.28 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.19 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 94.76 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.54 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 94.43 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.36 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.76 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.26 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.15 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 92.09 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.66 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.16 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 90.72 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.39 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 89.2 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 88.78 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 88.46 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 87.86 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 87.83 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 87.67 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 87.62 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 83.9 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 83.35 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 82.99 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 81.79 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 81.11 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 80.9 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 80.54 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 80.2 |
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=3.1e-23 Score=177.35 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=112.4
Q ss_pred CCeEEEECCCcchhccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCHHHH
Q 021661 149 GVSILDLCSSWVSHFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKPIEV 227 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~ 227 (309)
+.+|||||||+|..+... .+++|+|+|+.|++.++++ +.++++|+ +++|+++++||+|+|..+|+|++|+.++
T Consensus 37 ~~~vLDiGcG~G~~~~~~---~~~~giD~s~~~~~~a~~~~~~~~~~d~---~~l~~~~~~fD~I~~~~~l~h~~d~~~~ 110 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPL---KIKIGVEPSERMAEIARKRGVFVLKGTA---ENLPLKDESFDFALMVTTICFVDDPERA 110 (208)
T ss_dssp SSCEEEETCTTSTTHHHH---TCCEEEESCHHHHHHHHHTTCEEEECBT---TBCCSCTTCEEEEEEESCGGGSSCHHHH
T ss_pred CCeEEEECCCCccccccc---ceEEEEeCChhhcccccccccccccccc---cccccccccccccccccccccccccccc
Confidence 568999999999765433 3579999999999998874 89999999 8999999999999999999999999999
Q ss_pred HHHHHhhcccCcEEEEEecCcchh-HH-HhhhhhcCCCCchh-----HhHHHHHHHhCCCCCCceeeccCC-C-------
Q 021661 228 FKEMCQVLKPGGLAIVSFSNRCFW-TK-AISIWTSTGDADHV-----MIVGAYFHYAGGYEPPQAVDISPN-P------- 292 (309)
Q Consensus 228 l~~i~rvLkpGG~lii~~~~~~~~-~~-~~~~w~~~~~~~h~-----~~~~~~f~~~~Gf~~~~~~~~~~~-~------- 292 (309)
|+++.++|||||.+++.+++...+ .. ....+.......|. .-+.+++ ..+||+++++...... |
T Consensus 111 l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l-~~~Gf~~i~v~~~~~~~p~~~~~~~ 189 (208)
T d1vlma_ 111 LKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLM-RKAGFEEFKVVQTLFKHPSELSEIE 189 (208)
T ss_dssp HHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHH-HHTTCEEEEEEEECCSCGGGCSSCC
T ss_pred hhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHH-HHcCCeEEEEEEEecCCccchhhhh
Confidence 999999999999999998875432 21 12222222223332 2233455 5599998776653211 0
Q ss_pred -----CCCCCcEEEEEEeC
Q 021661 293 -----GRSDPMYVVYSRKA 306 (309)
Q Consensus 293 -----~~~~p~~~v~a~k~ 306 (309)
.++..++++.|+|+
T Consensus 190 ~~~~~~~~~~f~~~~a~K~ 208 (208)
T d1vlma_ 190 PVKEGYGEGAFVVIRGTKK 208 (208)
T ss_dssp CCEESSSSSSEEEEEEECC
T ss_pred HHHcCCCCccEEEEEEEeC
Confidence 12446788889885
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.84 E-value=1.7e-21 Score=168.63 Aligned_cols=97 Identities=23% Similarity=0.347 Sum_probs=83.1
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||||||+|... ..+..+.+|+|+|+|+.|++.|++ +++++++|+ +++|+++++||+|+|..+
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~---~~l~~~~~~fD~v~~~~~ 90 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQMPFTDERFHIVTCRIA 90 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CCCSCTTCEEEEEEESC
T ss_pred CCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccccccccccccc---cccccccccccccccccc
Confidence 55899999999999543 223335799999999999998754 378999999 899999999999999999
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++|++|+.++|++++++|||||.+++...
T Consensus 91 l~~~~d~~~~l~~~~r~LkpgG~l~i~~~ 119 (231)
T d1vl5a_ 91 AHHFPNPASFVSEAYRVLKKGGQLLLVDN 119 (231)
T ss_dssp GGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence 99999999999999999999998877543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.83 E-value=9.2e-22 Score=171.43 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=88.5
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCC
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~ 205 (309)
.+++.+.++ .+++.+|||||||+|..... +....+|+|+|+|+.|++.|++ ++.++++|+ +++|++
T Consensus 5 ~~~l~~~~~--~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~---~~~~~~ 79 (234)
T d1xxla_ 5 LGLMIKTAE--CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESLPFP 79 (234)
T ss_dssp HHHHHHHHT--CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBCCSC
T ss_pred HHHHHHHhC--CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccc---cccccc
Confidence 344444444 36799999999999954322 2335799999999999998764 378999999 889999
Q ss_pred CCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 206 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+++||+|+|..+++|++|+.++|+++.|+|||||.+++..
T Consensus 80 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence 9999999999999999999999999999999999887754
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=2.7e-21 Score=168.31 Aligned_cols=108 Identities=20% Similarity=0.268 Sum_probs=90.4
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCCCCCCCcee
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFEDNSFD 210 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~lp~~~~sfD 210 (309)
+..++.++++. +.+|||+|||+|.... .+..+.+|+|+|+|+.|++.|+++ ..++++|+ +++|+++++||
T Consensus 32 ~~~~~~~~~~~----~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~---~~l~~~~~~fD 104 (246)
T d2avna1 32 IGSFLEEYLKN----PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKA---EDLPFPSGAFE 104 (246)
T ss_dssp HHHHHHHHCCS----CCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCT---TSCCSCTTCEE
T ss_pred HHHHHHHhcCC----CCEEEEECCCCchhcccccccceEEEEeecccccccccccccccccccccc---ccccccccccc
Confidence 33444555553 7899999999996442 233467999999999999998875 46889999 89999999999
Q ss_pred EEEec-cchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 211 VITNV-VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 211 lVis~-~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+|+|. .+++|++|+.++|+++.++|||||.+++++++.
T Consensus 105 ~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~ 143 (246)
T d2avna1 105 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 143 (246)
T ss_dssp EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred ceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence 99986 589999999999999999999999999998864
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.82 E-value=8.7e-21 Score=162.96 Aligned_cols=110 Identities=27% Similarity=0.391 Sum_probs=92.0
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKL 202 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~l 202 (309)
...+...+.+++++ +.+|||||||+|... ..+..+.+|+|+|+|+.|++.|+++ +.++++|+ .++
T Consensus 24 ~~~~~~~~~~~l~~----~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~---~~l 96 (226)
T d1ve3a1 24 IETLEPLLMKYMKK----RGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKL 96 (226)
T ss_dssp HHHHHHHHHHSCCS----CCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSC
T ss_pred HHHHHHHHHHhcCC----CCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccccccccccccc---ccc
Confidence 44556666676654 789999999999643 2234567999999999999988753 77899999 899
Q ss_pred CCCCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 203 PFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|+++++||+|+|..+++|++ ++.++|+++.++|||||.++|.+++
T Consensus 97 ~~~~~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 97 SFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccCcCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 99999999999999999997 6778999999999999999998776
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.81 E-value=8.8e-21 Score=169.79 Aligned_cols=138 Identities=17% Similarity=0.119 Sum_probs=101.8
Q ss_pred CCCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 146 NTPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
..++.+|||||||+|..... ...+.+|+|+|+|+.|++.|++ +++++++|+ +++|+++++||+|++
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~---~~l~~~~~sfD~V~~ 141 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEIPCEDNSYDFIWS 141 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSCSSCTTCEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccc---ccccccccccchhhc
Confidence 35689999999999954322 2236799999999999987765 378999999 899999999999999
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEEEecCc------chhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR------CFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~------~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
..+++|++++.++|++++++|||||.+++..+.. .........+.. ........+.+.+ ..+||+.+++.+.
T Consensus 142 ~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~l-~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 142 QDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL-HDMGSLGLYRSLA-KECGLVTLRTFSR 219 (282)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTC-SSCCCHHHHHHHH-HHTTEEEEEEEEC
T ss_pred cchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHHHHHHhcc-CCCCCHHHHHHHH-HHcCCceEEEEEC
Confidence 9999999999999999999999999988875421 112222222221 1111223333344 5689988777765
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.3e-19 Score=158.76 Aligned_cols=145 Identities=17% Similarity=0.081 Sum_probs=102.8
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCC
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFE 205 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~ 205 (309)
.+.+.+. ..++.+|||||||+|..... ...+.+|+|+|+|+.|++.|+++ ++|+++|+ .++ +.
T Consensus 24 ~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~---~~~-~~ 97 (245)
T d1nkva_ 24 TLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AGY-VA 97 (245)
T ss_dssp HHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TTC-CC
T ss_pred HHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHH---hhc-cc
Confidence 3445544 35689999999999954322 22457999999999999977653 78999999 776 45
Q ss_pred CCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC---cchhHHHhhhhhcCCC--CchhHhHHHHHHHhCCC
Q 021661 206 DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN---RCFWTKAISIWTSTGD--ADHVMIVGAYFHYAGGY 280 (309)
Q Consensus 206 ~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~---~~~~~~~~~~w~~~~~--~~h~~~~~~~f~~~~Gf 280 (309)
+++||+|+|..+++|++|+.+++++++++|||||.+++..+. ..........|..... ......+...+ .++||
T Consensus 98 ~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~aG~ 176 (245)
T d1nkva_ 98 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTSDFLTLPGLVGAF-DDLGY 176 (245)
T ss_dssp SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHHHHTTTCSCGGGSCCHHHHHHHH-HTTTB
T ss_pred cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHHHHHhccCCCcccCCHHHHHHHH-HHcCC
Confidence 789999999999999999999999999999999999988653 1222333333432211 11122222333 56999
Q ss_pred CCCceeec
Q 021661 281 EPPQAVDI 288 (309)
Q Consensus 281 ~~~~~~~~ 288 (309)
+.++....
T Consensus 177 ~~v~~~~~ 184 (245)
T d1nkva_ 177 DVVEMVLA 184 (245)
T ss_dssp CCCEEEEC
T ss_pred EEEEEEeC
Confidence 88766544
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.77 E-value=1.2e-19 Score=158.98 Aligned_cols=98 Identities=22% Similarity=0.245 Sum_probs=79.5
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCCCCCCceeEEEec-cc
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLPFEDNSFDVITNV-VS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp~~~~sfDlVis~-~v 217 (309)
.++.+|||||||+|.... .+..+.+|+|+|+|+.|++.|++ +++++++|+ .++++ +++||+|+|. .+
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~---~~~~~-~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDI---SNLNI-NRKFDLITCCLDS 111 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCG---GGCCC-SCCEEEEEECTTG
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccch---hhhcc-cccccccceeeee
Confidence 346799999999996543 23346699999999999998865 388999999 77775 4589999986 58
Q ss_pred hhccCC---HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 218 VDYLTK---PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 218 l~~l~d---~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++|+.+ +.++|+++++.|||||.+++++.++
T Consensus 112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~ 145 (246)
T d1y8ca_ 112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred eeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence 888864 4679999999999999999987653
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=5.9e-19 Score=152.35 Aligned_cols=133 Identities=16% Similarity=0.104 Sum_probs=96.5
Q ss_pred CCCCeEEEECCCcchhcc-CC-CCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHFP-PG-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~-~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||||||+|.... .. ....+|+|+|+|++|++.|+++ ++|+++|+ +++++++++||+|++..
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~---~~~~~~~~~fD~I~~~~ 135 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL---QDFTPEPDSYDVIWIQW 135 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG---GGCCCCSSCEEEEEEES
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccc---ccccccccccccccccc
Confidence 446799999999996543 22 3345899999999999987653 68999999 88888889999999999
Q ss_pred chhccCCH--HHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCch---hHhHHHHHHHhCCCCCCceeec
Q 021661 217 SVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADH---VMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 217 vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h---~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
+++|++++ .++|++++++|||||.+++....... ..+....+..+ ...+.+.| ..+||+.++....
T Consensus 136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~-~~aGf~ii~~~~q 206 (222)
T d2ex4a1 136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-----GVILDDVDSSVCRDLDVVRRII-CSAGLSLLAEERQ 206 (222)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS-----SEEEETTTTEEEEBHHHHHHHH-HHTTCCEEEEEEC
T ss_pred ccccchhhhhhhHHHHHHHhcCCcceEEEEEccccc-----ccccccCCceeeCCHHHHHHHH-HHcCCEEEEEEEe
Confidence 99999876 48999999999999988887543211 01111112222 23344455 4589987665543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.76 E-value=6.9e-19 Score=152.32 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=87.5
Q ss_pred CCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 149 GVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
+.+|||||||+|..+.. +..+.+|+|+|+|++|++.|++ ++.++++|+ +++++ +++||+|++..+|+|++|
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~---~~~~~-~~~fD~I~~~~vleh~~d 96 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRF---EDAQL-PRRYDNIVLTHVLEHIDD 96 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCG---GGCCC-SSCEEEEEEESCGGGCSS
T ss_pred CCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccccccccccccc---ccccc-ccccccccccceeEecCC
Confidence 67999999999965432 3335789999999999998864 488999998 67765 578999999999999999
Q ss_pred HHHHHHHHH-hhcccCcEEEEEecCcchhHHHhhhh
Q 021661 224 PIEVFKEMC-QVLKPGGLAIVSFSNRCFWTKAISIW 258 (309)
Q Consensus 224 ~~~~l~~i~-rvLkpGG~lii~~~~~~~~~~~~~~w 258 (309)
+..+|+++. ++|||||.++++++|...+......|
T Consensus 97 ~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~ 132 (225)
T d2p7ia1 97 PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVK 132 (225)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHH
Confidence 999999998 89999999999999865554443333
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.76 E-value=2.1e-18 Score=149.01 Aligned_cols=107 Identities=16% Similarity=0.255 Sum_probs=82.2
Q ss_pred HHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cC--CCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecC
Q 021661 131 IAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PP--GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDL 196 (309)
Q Consensus 131 ~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~--~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~ 196 (309)
.+.+..++.+++++ +.+|||||||+|... .. ..++.+|+|+|+|+.|++.|+++ +++..+|.
T Consensus 26 ~~~i~~~~~~~~~~----~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~ 101 (225)
T d1im8a_ 26 ITAIGMLAERFVTA----DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI 101 (225)
T ss_dssp HHHHHHHHHHHCCT----TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT
T ss_pred HHHHHHHHHHhcCC----CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh
Confidence 34445555566654 789999999999543 22 24788999999999999998753 34455555
Q ss_pred CCCCCCCCCCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEec
Q 021661 197 NLNPKLPFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 197 ~~~~~lp~~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+ ++.+.+|+|+++.+++|++ ++.++|++++++|||||.+++...
T Consensus 102 ---~~--~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~ 148 (225)
T d1im8a_ 102 ---RH--VEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 148 (225)
T ss_dssp ---TT--CCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ---hc--cccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccc
Confidence 44 4556799999999999985 788999999999999998887643
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=7.4e-19 Score=154.17 Aligned_cols=174 Identities=14% Similarity=0.109 Sum_probs=108.7
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCCCC-eEEEEeCCHHHHhhCCCCC--------------------
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYKQD-RIVGMGMNEEELKRNPVLT-------------------- 189 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~~~-~v~giD~S~~~l~~a~~~i-------------------- 189 (309)
..+.+.+.+.+.....++.+|||||||+|.... .+..+. +|+|+|+|+.|++.|++++
T Consensus 35 ~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 114 (257)
T d2a14a1 35 KFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELE 114 (257)
T ss_dssp HHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhc
Confidence 334444555555545668899999999996533 333333 7999999999999876431
Q ss_pred ------------------cEEEecCCC-CCCCCCCCCceeEEEeccchhccC----CHHHHHHHHHhhcccCcEEEEEec
Q 021661 190 ------------------EYVVQDLNL-NPKLPFEDNSFDVITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 190 ------------------~~~~~D~~~-~~~lp~~~~sfDlVis~~vl~~l~----d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.....+... ....++++++||+|++.+++||+. ++..+++++.++|||||.+++...
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~ 194 (257)
T d2a14a1 115 GNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVT 194 (257)
T ss_dssp TCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEe
Confidence 011122210 022356788999999999999995 567899999999999999988765
Q ss_pred CcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCC----CCCCCCcEEEEEEeCC
Q 021661 247 NRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPN----PGRSDPMYVVYSRKAS 307 (309)
Q Consensus 247 ~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~----~~~~~p~~~v~a~k~~ 307 (309)
........... ......-....+.+.+ +.+||+..++...... ....++.+.|+|||++
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l-~~aGf~v~~~~~~~~~~~~~~~~~~~~~~v~arKkp 257 (257)
T d2a14a1 195 LRLPSYMVGKR-EFSCVALEKGEVEQAV-LDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 257 (257)
T ss_dssp SSCCEEEETTE-EEECCCCCHHHHHHHH-HHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred cccccceeccc-cccccCCCHHHHHHHH-HHCCCEEEEEEEeccccccccCCCCcEEEEEEEeCc
Confidence 42211000000 0000111234455566 5599996655333211 2235688999999985
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1e-17 Score=148.92 Aligned_cols=115 Identities=19% Similarity=0.286 Sum_probs=93.5
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---CCcEEEecCCCCCCCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---LTEYVVQDLNLNPKLP 203 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---~i~~~~~D~~~~~~lp 203 (309)
....+...+...++ .++.+|||||||+|.. +....++.+++|+|+|+.|++.|++ ++.+.++|+ .++|
T Consensus 69 l~~~~~~~l~~~~~---~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~---~~l~ 142 (268)
T d1p91a_ 69 LRDAIVAQLRERLD---DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRLP 142 (268)
T ss_dssp HHHHHHHHHHHHSC---TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT---TSCS
T ss_pred HHHHHHHHHHHhcC---CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeeh---hhcc
Confidence 34555666666665 3478999999999954 3445678899999999999998875 489999999 8999
Q ss_pred CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhh
Q 021661 204 FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI 257 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~ 257 (309)
+++++||+|++.++++| +++++|+|||||.++++++++....+....
T Consensus 143 ~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~~l~el~~~ 189 (268)
T d1p91a_ 143 FSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRHLMELKGL 189 (268)
T ss_dssp BCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTTTTHHHHTT
T ss_pred CCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCcchHHHHHH
Confidence 99999999999998887 478999999999999999987655544433
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=2.1e-18 Score=152.93 Aligned_cols=172 Identities=11% Similarity=0.117 Sum_probs=105.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCC-CCeEEEEeCCHHHHhhCCCC---------------------
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYK-QDRIVGMGMNEEELKRNPVL--------------------- 188 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~-~~~v~giD~S~~~l~~a~~~--------------------- 188 (309)
....+.+.+.++....++.+|||||||+|... ..+.+ ..+|+|+|+|+.|++.+++.
T Consensus 38 ~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~ 117 (263)
T d2g72a1 38 PWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIE 117 (263)
T ss_dssp HHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhc
Confidence 33344445555544566899999999998543 33323 45899999999999977531
Q ss_pred -----------------CcEEEecCCCC---CCCCCCCCceeEEEeccchhccC----CHHHHHHHHHhhcccCcEEEEE
Q 021661 189 -----------------TEYVVQDLNLN---PKLPFEDNSFDVITNVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 189 -----------------i~~~~~D~~~~---~~lp~~~~sfDlVis~~vl~~l~----d~~~~l~~i~rvLkpGG~lii~ 244 (309)
......|+... ...+...++||+|++.++|+|+. ++.+++++++++|||||.|++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~ 197 (263)
T d2g72a1 118 GKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI 197 (263)
T ss_dssp CSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred cccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 12334455211 12234567899999999999995 4678999999999999988876
Q ss_pred ecC-cchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeecc-CCC---C--CCCCcEEEEEEeC
Q 021661 245 FSN-RCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDIS-PNP---G--RSDPMYVVYSRKA 306 (309)
Q Consensus 245 ~~~-~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~-~~~---~--~~~p~~~v~a~k~ 306 (309)
..- ..++......+.. -+-....+.+.+ +.+||+.++..... +.+ . +.+.++.++|||.
T Consensus 198 ~~~~~~~~~~~~~~~~~--~~~t~e~v~~~l-~~aGf~v~~~~~~~~~~~~~~~~~d~~~~~~~~ArK~ 263 (263)
T d2g72a1 198 GALEESWYLAGEARLTV--VPVSEEEVREAL-VRSGYKVRDLRTYIMPAHLQTGVDDVKGVFFAWAQKV 263 (263)
T ss_dssp EEESCCEEEETTEEEEC--CCCCHHHHHHHH-HHTTEEEEEEEEEECCGGGCCTTBCCCEEEEEEEEEC
T ss_pred cccCCcccccCCccccc--CCCCHHHHHHHH-HHCCCeEEEEEEeeccCcccccccccceEEEEEEEeC
Confidence 542 2111100001110 011223455556 46999866443321 111 1 2357789999994
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.71 E-value=2.1e-17 Score=147.78 Aligned_cols=97 Identities=20% Similarity=0.285 Sum_probs=82.5
Q ss_pred CCCCeEEEECCCcchh---ccCCCC-CCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYK-QDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~-~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
.++.+|||||||+|.. +....+ +.+|+|+|+|+.|++.|+++ ++|.++|+ .+++++ ++||+|+|.
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~---~~~~~~-~~fD~v~~~ 101 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA---TEIELN-DKYDIAICH 101 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCT---TTCCCS-SCEEEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccc---cccccc-CCceEEEEe
Confidence 4578999999999954 333333 57999999999999987653 78999999 788875 579999999
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
.+++|++++..+|++++++|||||.+++..++
T Consensus 102 ~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 102 AFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp SCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 99999999999999999999999988877654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.71 E-value=6.1e-18 Score=147.70 Aligned_cols=97 Identities=25% Similarity=0.414 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEec-cc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNV-VS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~-~v 217 (309)
.+..+|||||||+|..+ ..+..+.+|+|+|+|++|++.|+++ +++.++|+ ++++++ ++||+|+|. .+
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~---~~l~~~-~~fD~I~~~~~~ 115 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV---LEIAFK-NEFDAVTMFFST 115 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG---GGCCCC-SCEEEEEECSSG
T ss_pred CCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhh---hhcccc-cccchHhhhhhh
Confidence 34679999999999653 2333467999999999999988763 88999999 888876 579999997 57
Q ss_pred hhccC--CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 218 VDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 218 l~~l~--d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++|++ +..++|++++++|||||.+++++++
T Consensus 116 ~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 116 IMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 78874 5679999999999999999998765
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.69 E-value=1.5e-17 Score=140.96 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=76.6
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
+.+|||||||+|... ..+..+.+|+|+|+|+.|++.+++ ++++...|+ ..+++ +++||+|++..+++
T Consensus 31 ~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~---~~~~~-~~~fD~I~~~~~~~ 106 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDL---NTLTF-DGEYDFILSTVVMM 106 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCT---TTCCC-CCCEEEEEEESCGG
T ss_pred CCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheec---ccccc-cccccEEEEeeeee
Confidence 569999999999543 223346799999999999997653 367888898 77765 57899999999999
Q ss_pred ccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 220 YLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 220 ~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|+++. .++++++.++|||||.+++...
T Consensus 107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 107 FLEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp GSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99754 5899999999999998877644
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.69 E-value=1.2e-17 Score=146.86 Aligned_cols=99 Identities=22% Similarity=0.244 Sum_probs=80.2
Q ss_pred CCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCC-CCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPF-EDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~-~~~sfDlVis~ 215 (309)
++.+|||||||+|..+... ....+|+|+|+|+.|++.|++ ++.+.++|+ ...++ .+++||+|+|.
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~---~~~~~~~~~~fD~V~~~ 100 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS---YGRHMDLGKEFDVISSQ 100 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCT---TTSCCCCSSCEEEEEEE
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcch---hhhcccccccceEEEEc
Confidence 3789999999999654322 234589999999999998864 277999998 66654 46689999999
Q ss_pred cchhccCC----HHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 216 VSVDYLTK----PIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 216 ~vl~~l~d----~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
+++||+.+ ...+|+++.++|||||.+++++++..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~ 138 (252)
T d1ri5a_ 101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRD 138 (252)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHH
Confidence 99999843 45799999999999999999988743
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.68 E-value=3.3e-17 Score=144.50 Aligned_cols=97 Identities=16% Similarity=0.149 Sum_probs=81.8
Q ss_pred CCCCeEEEECCCcchhcc-CCCC-CCeEEEEeCCHHHHhhCCCC------CcEEEecCCCCCCCCCCCCceeEEEeccch
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYK-QDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFEDNSFDVITNVVSV 218 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~-~~~v~giD~S~~~l~~a~~~------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl 218 (309)
.+..+|||+|||+|.... .+.+ ..+|+++|+|+.|++.|+++ ++++++|+ +++++++++||+|++..++
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~---~~~~~~~~~fD~I~~~~vl 168 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASM---ETATLPPNTYDLIVIQWTA 168 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCG---GGCCCCSSCEEEEEEESCG
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccc---cccccCCCccceEEeeccc
Confidence 457899999999996543 2222 45899999999999988753 78999999 8888888999999999999
Q ss_pred hccCCH--HHHHHHHHhhcccCcEEEEEec
Q 021661 219 DYLTKP--IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 219 ~~l~d~--~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+|++++ .++|++++++|||||.++|..+
T Consensus 169 ~hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 169 IYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 999876 4889999999999999888654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=2.1e-16 Score=137.22 Aligned_cols=157 Identities=15% Similarity=0.075 Sum_probs=107.5
Q ss_pred HHHHHHHhhCCC-CCCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCC
Q 021661 133 ALTKYYSEVFPP-SNTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKL 202 (309)
Q Consensus 133 ~l~~~~~~~l~~-~~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~l 202 (309)
+++..+..-+.. ...++.+|||||||+|.. +....+.+.|+|+|+|+.|++.+++ ++..+..|.. ...
T Consensus 58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~--~~~ 135 (230)
T d1g8sa_ 58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDAN--KPQ 135 (230)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTT--CGG
T ss_pred HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeec--cCc
Confidence 344444443332 147799999999999943 3444678899999999999986543 3677888873 223
Q ss_pred CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHH---HHHHHhCC
Q 021661 203 PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVG---AYFHYAGG 279 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~---~~f~~~~G 279 (309)
++.+..+|++++...+++..++..+++++.+.|||||.+++...... ......+-..+. +.+ +++|
T Consensus 136 ~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~----------~d~~~~~~~~~~e~~~~L-~~aG 204 (230)
T d1g8sa_ 136 EYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARS----------IDVTKDPKEIFKEQKEIL-EAGG 204 (230)
T ss_dssp GGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGG----------TCSSSCHHHHHHHHHHHH-HHHT
T ss_pred ccccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccc----------cCCCCCHHHHHHHHHHHH-HHcC
Confidence 45667788888888888899999999999999999998887653211 111111212222 233 4589
Q ss_pred CCCCceeeccCCCCCCCCcEEEEEEe
Q 021661 280 YEPPQAVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 280 f~~~~~~~~~~~~~~~~p~~~v~a~k 305 (309)
|+.++.+++.|.. ...++|+|+-
T Consensus 205 F~ive~idL~py~---~~H~~vvg~y 227 (230)
T d1g8sa_ 205 FKIVDEVDIEPFE---KDHVMFVGIW 227 (230)
T ss_dssp EEEEEEEECTTTS---TTEEEEEEEE
T ss_pred CEEEEEecCCCCc---CCeEEEEEEe
Confidence 9999998877642 3367777764
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.64 E-value=3.1e-16 Score=134.23 Aligned_cols=144 Identities=8% Similarity=0.005 Sum_probs=95.7
Q ss_pred CCCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEe-c
Q 021661 146 NTPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITN-V 215 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis-~ 215 (309)
..|+.+|||||||+|.. +....+.++|+|+|+|+.|++.+++ ++.++..|+ ...+.....+|.+.. .
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~---~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA---SKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT---TCGGGTTTTCCCEEEEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec---cCccccccccceEEEEE
Confidence 57799999999999943 3334567799999999999997654 478999998 555443443433322 2
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH-HhCCCCCCceeeccCCCCC
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH-YAGGYEPPQAVDISPNPGR 294 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~-~~~Gf~~~~~~~~~~~~~~ 294 (309)
..+.|..+...++++++++|||||.+++.+..+. .....+....+..... ..+||+..+.+++.|-.
T Consensus 131 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~----------~d~~~~~~~~~~~~~~~l~~gf~i~E~i~L~P~~-- 198 (209)
T d1nt2a_ 131 QDIAQKNQIEILKANAEFFLKEKGEVVIMVKARS----------IDSTAEPEEVFKSVLKEMEGDFKIVKHGSLMPYH-- 198 (209)
T ss_dssp ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHH----------HCTTSCHHHHHHHHHHHHHTTSEEEEEEECTTTC--
T ss_pred ecccChhhHHHHHHHHHHHhccCCeEEEEEEccc----------cCCCCCHHHHHHHHHHHHHcCCEEEEEEccCCCc--
Confidence 3466777889999999999999999888653211 0011111122222111 34899999998877633
Q ss_pred CCCcEEEEEEe
Q 021661 295 SDPMYVVYSRK 305 (309)
Q Consensus 295 ~~p~~~v~a~k 305 (309)
...++|++.+
T Consensus 199 -~~H~~v~~~r 208 (209)
T d1nt2a_ 199 -RDHIFIHAYR 208 (209)
T ss_dssp -TTEEEEEEEE
T ss_pred -cCcEEEEEEe
Confidence 4446677654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.64 E-value=2.3e-16 Score=139.34 Aligned_cols=146 Identities=14% Similarity=0.147 Sum_probs=108.4
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCCC-----------CcEEEecCCCCCC
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPVL-----------TEYVVQDLNLNPK 201 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~~-----------i~~~~~D~~~~~~ 201 (309)
++...+. ..++.+|||+|||+|... + ...+.++|+++|+++++++.|+++ +.+.++|+ .+
T Consensus 87 ~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~---~~ 161 (264)
T d1i9ga_ 87 QIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL---AD 161 (264)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG---GG
T ss_pred HHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc---cc
Confidence 3334444 367999999999999542 2 236789999999999999988753 67889998 77
Q ss_pred CCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCC
Q 021661 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYE 281 (309)
Q Consensus 202 lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~ 281 (309)
.++++++||.|++ ++++|.+++.++.++|||||.+++..|+..-..+. .+-+....||.
T Consensus 162 ~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~----------------~~~l~~~~~f~ 220 (264)
T d1i9ga_ 162 SELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATVTQLSRI----------------VEALRAKQCWT 220 (264)
T ss_dssp CCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSHHHHHHH----------------HHHHHHHSSBC
T ss_pred ccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCccChHHHH----------------HHHHHHcCCee
Confidence 7888999999985 68999999999999999999998877753322211 22244457898
Q ss_pred CCceeeccCCCCC-------------CCCcEEEEEEeCCC
Q 021661 282 PPQAVDISPNPGR-------------SDPMYVVYSRKAST 308 (309)
Q Consensus 282 ~~~~~~~~~~~~~-------------~~p~~~v~a~k~~~ 308 (309)
.++++-+..+.+. .-.-|+++|||.+.
T Consensus 221 ~i~~~E~l~R~~~v~~~~~RP~~~~vgHTgfl~~ark~~~ 260 (264)
T d1i9ga_ 221 EPRAWETLQRGWNVVGLAVRPQHSMRGHTAFLVATRRLAP 260 (264)
T ss_dssp CCEEECCCCCCEEEETTEEEECSCCCCCSCEEEEEEBCCT
T ss_pred cceEEEEEEEEEEeccCeeCCCCCCccchHHHhhhhhccC
Confidence 8888777655432 11238999999753
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=3.6e-16 Score=140.32 Aligned_cols=111 Identities=17% Similarity=0.267 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccC--CCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecC
Q 021661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP--GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDL 196 (309)
Q Consensus 128 ~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~ 196 (309)
++...+..+.+.+.+. ..++.+|||||||+|..... ...+++|+|+++|+++++.++++ +++...|.
T Consensus 43 ~~Aq~~k~~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~ 120 (291)
T d1kpia_ 43 EEAQYAKRKLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW 120 (291)
T ss_dssp HHHHHHHHHHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG
T ss_pred HHHHHHHHHHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc
Confidence 4445555666766666 47799999999999965432 23467999999999998876553 44445554
Q ss_pred CCCCCCCCCCCceeEEEeccchhccCC---------HHHHHHHHHhhcccCcEEEEEec
Q 021661 197 NLNPKLPFEDNSFDVITNVVSVDYLTK---------PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 197 ~~~~~lp~~~~sfDlVis~~vl~~l~d---------~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++.+++||.|+|..+++|+.+ .+.++++++++|||||.+++.+.
T Consensus 121 ------~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i 173 (291)
T d1kpia_ 121 ------EEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 173 (291)
T ss_dssp ------GGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred ------cccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEE
Confidence 445789999999999999975 57999999999999999988754
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.61 E-value=6.3e-16 Score=138.28 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecC
Q 021661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDL 196 (309)
Q Consensus 128 ~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~ 196 (309)
++...+..+.+.+.+. ..++.+|||||||+|.... ....+++|+|+++|+++++.++++ +++..+|.
T Consensus 44 ~eAQ~~k~~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~ 121 (285)
T d1kpga_ 44 QEAQIAKIDLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW 121 (285)
T ss_dssp HHHHHHHHHHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG
T ss_pred HHHHHHHHHHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh
Confidence 4555666777777776 4789999999999996432 223468999999999999876542 67888888
Q ss_pred CCCCCCCCCCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEec
Q 021661 197 NLNPKLPFEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 197 ~~~~~lp~~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..++ ++||.|++..+++|+. +...+++++.++|||||.+++.+.
T Consensus 122 ---~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 122 ---EQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 167 (285)
T ss_dssp ---GGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ---hccc---ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence 5654 6899999999999994 568999999999999998887643
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.60 E-value=1.9e-16 Score=132.26 Aligned_cols=97 Identities=11% Similarity=0.055 Sum_probs=78.7
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------------------CcEEEecCCCCCCCC-C
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------------------TEYVVQDLNLNPKLP-F 204 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------------------i~~~~~D~~~~~~lp-~ 204 (309)
.++.+|||+|||+|... ..+..+.+|+|+|+|+.|++.|+++ ++++++|+ ..++ .
T Consensus 19 ~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~l~~~ 95 (201)
T d1pjza_ 19 VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF---FALTAR 95 (201)
T ss_dssp CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC---SSSTHH
T ss_pred CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc---cccccc
Confidence 46899999999999543 2334578999999999999987652 47888888 6665 3
Q ss_pred CCCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEec
Q 021661 205 EDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
...+||+|++..+++|+.+ ...+++++.++|||||.+++...
T Consensus 96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~ 139 (201)
T d1pjza_ 96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL 139 (201)
T ss_dssp HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence 4568999999999999974 57899999999999998776544
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.60 E-value=5.7e-16 Score=138.34 Aligned_cols=108 Identities=15% Similarity=0.278 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCC
Q 021661 130 AIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNL 198 (309)
Q Consensus 130 ~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~ 198 (309)
...+..+.+.+.+. ..++.+|||||||+|.....+ ..+.+|+|+|+|+++++.|+++ +.+...|.
T Consensus 36 AQ~~k~~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~-- 111 (280)
T d2fk8a1 36 AQYAKVDLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW-- 111 (280)
T ss_dssp HHHHHHHHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG--
T ss_pred HHHHHHHHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhh--
Confidence 33344455555554 477999999999999654322 3467999999999999877653 44555565
Q ss_pred CCCCCCCCCceeEEEeccchhccCC--HHHHHHHHHhhcccCcEEEEEe
Q 021661 199 NPKLPFEDNSFDVITNVVSVDYLTK--PIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 199 ~~~lp~~~~sfDlVis~~vl~~l~d--~~~~l~~i~rvLkpGG~lii~~ 245 (309)
..+ +++||.|++..+++|+.+ ...+|+++.++|||||.++|..
T Consensus 112 -~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 112 -EDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp -GGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -hhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 443 468999999999999964 5899999999999999998864
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.59 E-value=6.4e-16 Score=135.55 Aligned_cols=137 Identities=17% Similarity=0.223 Sum_probs=99.1
Q ss_pred CCCCCeEEEECCCcchhc---cC-CCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEE
Q 021661 146 NTPGVSILDLCSSWVSHF---PP-GYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~---~~-~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
..++.+|||+|||+|... +. ..+.++|+++|+++++++.|+++ +++..+|+ .+. +++++||.|
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di---~~~-~~~~~fD~V 158 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI---ADF-ISDQMYDAV 158 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCT---TTC-CCSCCEEEE
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeee---ecc-cccceeeee
Confidence 467999999999999532 22 25788999999999999987753 68888888 544 456789999
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCCceeeccCCC
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPPQAVDISPNP 292 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~~~~ 292 (309)
++ +++++..++.++.++|||||.+++..++..-..+. .+-+ +..||..+++..+..++
T Consensus 159 ~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~----------------~~~l-~~~gf~~i~~~E~~~R~ 216 (250)
T d1yb2a1 159 IA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKT----------------VLSL-SASGMHHLETVELMKRR 216 (250)
T ss_dssp EE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHH----------------HHHS-GGGTEEEEEEEEEEECC
T ss_pred ee-----cCCchHHHHHHHHHhcCCCceEEEEeCCcChHHHH----------------HHHH-HHCCCceeEEEEEEeEE
Confidence 86 47889999999999999999999877753211111 1112 34678877776654433
Q ss_pred CCC-----CC--------cEEEEEEeCCC
Q 021661 293 GRS-----DP--------MYVVYSRKAST 308 (309)
Q Consensus 293 ~~~-----~p--------~~~v~a~k~~~ 308 (309)
+.. -| =|+++|||+++
T Consensus 217 ~~~~~~~~RP~~~mvgHTgfl~~arK~~g 245 (250)
T d1yb2a1 217 ILVREGATRPASDDLTHTAFITFAIKKSG 245 (250)
T ss_dssp CCCCTTCCCCGGGGSCEEEEEEEEEECCS
T ss_pred EEEcCCccCCCCCCccchhhhhhhcccCC
Confidence 221 12 18999999875
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.2e-16 Score=139.40 Aligned_cols=102 Identities=12% Similarity=0.047 Sum_probs=74.6
Q ss_pred CCCCeEEEECCCcchhc-------cCCCC--CCeEEEEeCCHHHHhhCCCC------Cc-----EEEecCCC---CCCCC
Q 021661 147 TPGVSILDLCSSWVSHF-------PPGYK--QDRIVGMGMNEEELKRNPVL------TE-----YVVQDLNL---NPKLP 203 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-------~~~~~--~~~v~giD~S~~~l~~a~~~------i~-----~~~~D~~~---~~~lp 203 (309)
.+..+|||||||+|... ....+ ..+++|+|+|+.|++.++++ +. +.+.++.. ....+
T Consensus 39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (280)
T d1jqea_ 39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK 118 (280)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence 34458999999999542 11222 34789999999999987642 22 22222200 01235
Q ss_pred CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 204 FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.++++||+|++.++|+|++|+.++|++++++|||||.+++...++
T Consensus 119 ~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~ 163 (280)
T d1jqea_ 119 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 163 (280)
T ss_dssp SSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred CCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 568899999999999999999999999999999999888877653
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.56 E-value=5.8e-15 Score=129.55 Aligned_cols=150 Identities=11% Similarity=0.103 Sum_probs=96.6
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.+..+|||||||+|.. +...+|..+++++|+ +.+++.+++ +++++.+|+ .+ +. ..+||+|++
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~---~~-~~-~~~~D~v~~ 152 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDF---FE-PL-PRKADAIIL 152 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCT---TS-CC-SSCEEEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccc---hh-hc-ccchhheee
Confidence 3467999999999954 345678899999998 567776543 378999998 33 22 256999999
Q ss_pred ccchhccCCH--HHHHHHHHhhcccCcEEEEEecC--c-c---hhHHHh--hhhhcC-CCCchhHhHHHHHHHhCCCCCC
Q 021661 215 VVSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFSN--R-C---FWTKAI--SIWTST-GDADHVMIVGAYFHYAGGYEPP 283 (309)
Q Consensus 215 ~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~~--~-~---~~~~~~--~~w~~~-~~~~h~~~~~~~f~~~~Gf~~~ 283 (309)
.++|||+++. .++|++++++|||||.++|.... . . .....+ ..+... +......-+.+.+ +++||+.+
T Consensus 153 ~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll-~~AGf~~~ 231 (253)
T d1tw3a2 153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLA-ASAGLVVE 231 (253)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHH-HHTTEEEE
T ss_pred ccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHH-HHCCCeEE
Confidence 9999999766 47899999999999977664321 1 1 111111 112111 1111233344455 56999988
Q ss_pred ceeeccCCCCCCCCc-EEEEEEeC
Q 021661 284 QAVDISPNPGRSDPM-YVVYSRKA 306 (309)
Q Consensus 284 ~~~~~~~~~~~~~p~-~~v~a~k~ 306 (309)
++..+.. + ..|. ..++..|+
T Consensus 232 ~v~~~~~-p--~~~~~~~li~~~P 252 (253)
T d1tw3a2 232 EVRQLPS-P--TIPYDLSLLVLAP 252 (253)
T ss_dssp EEEEEEC-S--SSSCEEEEEEEEE
T ss_pred EEEECCC-C--CCCccEEEEEEec
Confidence 8777543 2 1333 34555554
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2e-15 Score=130.60 Aligned_cols=107 Identities=11% Similarity=0.048 Sum_probs=82.4
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC-------------------------C
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV-------------------------L 188 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~-------------------------~ 188 (309)
.+++.+.++. .++.+|||+|||.|... ..+..+.+|+|+|+|+.||+.+++ +
T Consensus 34 ~~~~~~~l~~--~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (229)
T d2bzga1 34 KKHLDTFLKG--KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGN 111 (229)
T ss_dssp HHHHHHHHTT--CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred HHHHHHhcCC--CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCc
Confidence 3444444432 45789999999999543 334457899999999999986532 2
Q ss_pred CcEEEecCCCCCCCC-CCCCceeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEec
Q 021661 189 TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 189 i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++++++|+ ..++ ...++||+|+...+++|++ +...+++++.++|||||.+++.+.
T Consensus 112 v~~~~~d~---~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~ 169 (229)
T d2bzga1 112 ISLYCCSI---FDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL 169 (229)
T ss_dssp EEEEESCG---GGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEEcch---hhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence 67899998 5554 5578899999999999995 567899999999999998766654
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=1.3e-14 Score=125.42 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=104.5
Q ss_pred HHHHHHHhhCCC-CCCCCCeEEEECCCcchhcc---C-CCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCC
Q 021661 133 ALTKYYSEVFPP-SNTPGVSILDLCSSWVSHFP---P-GYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPK 201 (309)
Q Consensus 133 ~l~~~~~~~l~~-~~~~~~~ILDiGcG~g~~~~---~-~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~ 201 (309)
++...+..-+.. ...++.+|||+|||+|.... . ..+.++|+|+|+|+.|++.+++ ++..+..|+.....
T Consensus 57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~ 136 (227)
T d1g8aa_ 57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEE 136 (227)
T ss_dssp HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGG
T ss_pred HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccc
Confidence 344444433322 25789999999999985432 2 2478899999999999986543 36778888843333
Q ss_pred CCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchh-HhHHHHHHHhCCC
Q 021661 202 LPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHV-MIVGAYFHYAGGY 280 (309)
Q Consensus 202 lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~-~~~~~~f~~~~Gf 280 (309)
.+.....+|+|++. +.+..+...+++++.+.|||||.+++.+..+.. .+ ......+ ..+.+. ...||
T Consensus 137 ~~~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~------~~--~~~~~~v~~~v~~l--~~~gf 204 (227)
T d1g8aa_ 137 YRALVPKVDVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSI------DV--TKEPEQVFREVERE--LSEYF 204 (227)
T ss_dssp GTTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGT------CT--TSCHHHHHHHHHHH--HHTTS
T ss_pred ccccccceEEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEECCcc------CC--CCCHHHHHHHHHHH--HHcCC
Confidence 44455678988764 556667889999999999999998887532211 00 0011111 111222 34799
Q ss_pred CCCceeeccCCCCCCCCcEEEEEEe
Q 021661 281 EPPQAVDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 281 ~~~~~~~~~~~~~~~~p~~~v~a~k 305 (309)
+.++.+++.|.. ...+.|++||
T Consensus 205 ~iie~i~L~p~~---~~H~~vv~rK 226 (227)
T d1g8aa_ 205 EVIERLNLEPYE---KDHALFVVRK 226 (227)
T ss_dssp EEEEEEECTTTS---SSEEEEEEEC
T ss_pred EEEEEEcCCCCC---CceEEEEEEe
Confidence 999998877743 3468999998
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.55 E-value=2.8e-15 Score=125.66 Aligned_cols=95 Identities=17% Similarity=0.137 Sum_probs=77.9
Q ss_pred CCCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||||||+|.. +..+....+|+|+|+|++|++.|+++ ++++++|+ .+++.+.+.||+|++..
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda---~~~~~~~~~~D~v~~~~ 108 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA---PEALCKIPDIDIAVVGG 108 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCH---HHHHTTSCCEEEEEESC
T ss_pred CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECch---hhcccccCCcCEEEEeC
Confidence 5689999999999943 33344567999999999999988763 78999998 66666778899999987
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
..+ +...+++.+.+.|||||.+++....
T Consensus 109 ~~~---~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 109 SGG---ELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp CTT---CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred ccc---cchHHHHHHHHHhCcCCEEEEEeec
Confidence 654 4578999999999999999887553
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.3e-15 Score=130.32 Aligned_cols=95 Identities=15% Similarity=0.018 Sum_probs=73.6
Q ss_pred CCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEE-----
Q 021661 148 PGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVIT----- 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVi----- 213 (309)
++.+|||||||+|.... ......+|+|+|+|+.|++.|+++ +.++..|+.. ...++++++||.|+
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED-VAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHH-HGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccc-cccccccccccceeecccc
Confidence 47899999999995432 222346899999999999988653 4566666511 12346678899987
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+...++|+.++..++++++|+|||||.|++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~ 161 (229)
T d1zx0a1 132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTY 161 (229)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEEEEEEEE
T ss_pred cccccccccCHHHHHHHHHHHcCCCcEEEE
Confidence 567888899999999999999999998876
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=2e-15 Score=135.14 Aligned_cols=99 Identities=15% Similarity=0.148 Sum_probs=72.4
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC------------CcEEEecCCCC-CCCCCCCCceeEEEe
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL------------TEYVVQDLNLN-PKLPFEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~------------i~~~~~D~~~~-~~lp~~~~sfDlVis 214 (309)
+.+|||||||+|... ..+..+.+|+|+|+|++||+.|+++ ..+..+|.... ..+| ..++||+|+|
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fd~v~~ 135 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVP-AGDGFDAVIC 135 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSC-CTTCEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccC-CCCCceEEEE
Confidence 679999999999653 3333467999999999999988653 22334443000 0122 2467999998
Q ss_pred cc-chhccCC-------HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VV-SVDYLTK-------PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~-vl~~l~d-------~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.. +++|+++ ...+|++++++|||||.|++++.++
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 177 (292)
T d1xvaa_ 136 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 177 (292)
T ss_dssp CSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred ecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence 64 8999864 4579999999999999999987653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=1.1e-14 Score=128.85 Aligned_cols=144 Identities=13% Similarity=0.118 Sum_probs=100.3
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchh---cc-CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSH---FP-PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP 203 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~---~~-~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp 203 (309)
++...+. ..++.+|||+|||+|.. ++ ...+.++|+++|+++++++.|+++ +.+...|+ ...
T Consensus 94 ~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~----~~~ 167 (266)
T d1o54a_ 94 FIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI----SEG 167 (266)
T ss_dssp HHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG----GGC
T ss_pred HHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc----ccc
Confidence 3444444 36799999999999953 22 235788999999999999998774 45555665 223
Q ss_pred CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHHHhCCCCCC
Q 021661 204 FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFHYAGGYEPP 283 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~~~~Gf~~~ 283 (309)
++...||.|+ .++++|.++++++.++|||||.+++..|...-. .-..+.+ +..||.++
T Consensus 168 ~~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv----------------~~~~~~l-~~~gF~~i 225 (266)
T d1o54a_ 168 FDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPTTNQV----------------QETLKKL-QELPFIRI 225 (266)
T ss_dssp CSCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESSHHHH----------------HHHHHHH-HHSSEEEE
T ss_pred ccccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCcccHH----------------HHHHHHH-HHCCceeE
Confidence 5567799876 478999999999999999999998876642211 1112223 34789888
Q ss_pred ceeeccCCCCCC--------C-----CcEEEEEEeCCC
Q 021661 284 QAVDISPNPGRS--------D-----PMYVVYSRKAST 308 (309)
Q Consensus 284 ~~~~~~~~~~~~--------~-----p~~~v~a~k~~~ 308 (309)
++.....+.+.. . .-|+++|||.+.
T Consensus 226 ~~~E~l~R~~~~~~~~vRP~~~~vgHTgfl~~ark~~~ 263 (266)
T d1o54a_ 226 EVWESLFRPYKPVPERLRPVDRMVAHTAYMIFATKVCR 263 (266)
T ss_dssp EEECCCCCCEECCTTSCEECSCCCCCSCEEEEEEECSC
T ss_pred EEEEEEEEEEEecCCccCCCCCCcchHHHHHHheeccc
Confidence 777665443211 1 229999999864
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.52 E-value=1e-14 Score=122.97 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=81.6
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCCCC
Q 021661 136 KYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKLPF 204 (309)
Q Consensus 136 ~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~lp~ 204 (309)
+++.+.++. .++.+|||+|||+|... ..+....+|+++|+|+.+++.++++ +++..+|. .+ ++
T Consensus 42 ~lLi~~l~~--~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~---~~-~~ 115 (194)
T d1dusa_ 42 KILVENVVV--DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL---YE-NV 115 (194)
T ss_dssp HHHHHHCCC--CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST---TT-TC
T ss_pred HHHHHhCCc--CCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcch---hh-hh
Confidence 344455553 56889999999999432 2233456999999999999987652 67888888 44 45
Q ss_pred CCCceeEEEeccchhccCC-HHHHHHHHHhhcccCcEEEEEecC
Q 021661 205 EDNSFDVITNVVSVDYLTK-PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d-~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
++++||+|+++..+++..+ .+++++++.++|||||.+++....
T Consensus 116 ~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 116 KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 6789999999999887765 478999999999999988876543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.46 E-value=1.1e-14 Score=128.02 Aligned_cols=101 Identities=16% Similarity=0.234 Sum_probs=77.4
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPF 204 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~ 204 (309)
...+.+.+... ++.+|||+|||+|... ..+..+.+|+|+|+|+.|++.|++| ++++++|+ .. .+
T Consensus 109 l~l~~l~~~~~----~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~---~~-~~ 180 (254)
T d2nxca1 109 LALKALARHLR----PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSL---EA-AL 180 (254)
T ss_dssp HHHHHHHHHCC----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCH---HH-HG
T ss_pred HHHHHHHhhcC----ccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccc---cc-cc
Confidence 33455555544 4899999999999533 2233467999999999999988764 67888887 33 34
Q ss_pred CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 205 EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 205 ~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
++++||+|+++...+. ..++++++.++|||||.++++
T Consensus 181 ~~~~fD~V~ani~~~~---l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 181 PFGPFDLLVANLYAEL---HAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp GGCCEEEEEEECCHHH---HHHHHHHHHHHEEEEEEEEEE
T ss_pred cccccchhhhcccccc---HHHHHHHHHHhcCCCcEEEEE
Confidence 5678999999866553 467889999999999999986
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.40 E-value=2.6e-13 Score=119.17 Aligned_cols=136 Identities=14% Similarity=0.103 Sum_probs=90.4
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~ 215 (309)
...+|||||||.|.. +...+|..+++++|+ +++++.+++ ++.++.+|. .. +.+ .+||+|++.
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~---~~-~~p-~~~D~v~~~ 154 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDF---FK-PLP-VTADVVLLS 154 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCT---TS-CCS-CCEEEEEEE
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeec---cc-ccc-ccchhhhcc
Confidence 357999999999954 455678999999998 677776543 377888887 32 333 459999999
Q ss_pred cchhccCCH--HHHHHHHHhhcccCcEEEEEec-C--c----chhHHHhhh--hhc-CCCCchhHhHHHHHHHhCCCCCC
Q 021661 216 VSVDYLTKP--IEVFKEMCQVLKPGGLAIVSFS-N--R----CFWTKAISI--WTS-TGDADHVMIVGAYFHYAGGYEPP 283 (309)
Q Consensus 216 ~vl~~l~d~--~~~l~~i~rvLkpGG~lii~~~-~--~----~~~~~~~~~--w~~-~~~~~h~~~~~~~f~~~~Gf~~~ 283 (309)
++||++++. .++|++++++|||||.++|... . . ......++. +.. .+......-+.+++ +++||+.+
T Consensus 155 ~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~~g~~rt~~e~~~ll-~~AGf~~~ 233 (256)
T d1qzza2 155 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFMGGRVRTRDEVVDLA-GSAGLALA 233 (256)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHHSCCCCCHHHHHHHH-HTTTEEEE
T ss_pred ccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhCCCccCCHHHHHHHH-HHCCCcee
Confidence 999999765 5789999999999997665432 1 1 111222211 111 11111233344556 56999988
Q ss_pred ceeeccC
Q 021661 284 QAVDISP 290 (309)
Q Consensus 284 ~~~~~~~ 290 (309)
++....+
T Consensus 234 ~~~~~~~ 240 (256)
T d1qzza2 234 SERTSGS 240 (256)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 8776554
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.39 E-value=1.2e-13 Score=117.34 Aligned_cols=98 Identities=13% Similarity=0.105 Sum_probs=79.8
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC--CCCCceeEEEec
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp--~~~~sfDlVis~ 215 (309)
...|||||||+|.. ++...|...++|+|+++.++..+.+ |+.++++|+ ..+. ++++++|.|++.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da---~~l~~~~~~~~~d~v~i~ 106 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDA---DTLTDVFEPGEVKRVYLN 106 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCG---GGHHHHCCTTSCCEEEEE
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccch---hhhhcccCchhhhccccc
Confidence 45899999999954 3455789999999999999986543 488999999 6664 778999999999
Q ss_pred cchhccCCH--------HHHHHHHHhhcccCcEEEEEecCcc
Q 021661 216 VSVDYLTKP--------IEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 216 ~vl~~l~d~--------~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
+...|.... ..+|++++|+|||||.|.|.+....
T Consensus 107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~ 148 (204)
T d2fcaa1 107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRG 148 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHH
T ss_pred cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChH
Confidence 887776543 5899999999999999988765543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.39 E-value=1.2e-13 Score=118.13 Aligned_cols=92 Identities=20% Similarity=0.136 Sum_probs=74.2
Q ss_pred CCCCCeEEEECCCcchhc---cC-CCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEE
Q 021661 146 NTPGVSILDLCSSWVSHF---PP-GYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~---~~-~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
..++.+|||||||+|... .. ..+.++|+++|+++++++.|+++ +.++++|+ .+.+..+++||+|+
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~---~~~~~~~~~fD~I~ 149 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDG---YYGVPEFSPYDVIF 149 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEE
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCch---HHccccccchhhhh
Confidence 366999999999999533 22 24678999999999999988763 66888998 66666678899999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+..+++++++ ++.++|||||.+++.+.
T Consensus 150 ~~~~~~~~p~------~l~~~LkpGG~lv~pv~ 176 (213)
T d1dl5a1 150 VTVGVDEVPE------TWFTQLKEGGRVIVPIN 176 (213)
T ss_dssp ECSBBSCCCH------HHHHHEEEEEEEEEEBC
T ss_pred hhccHHHhHH------HHHHhcCCCcEEEEEEC
Confidence 9999998863 57788999999988654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.5e-13 Score=117.02 Aligned_cols=93 Identities=20% Similarity=0.197 Sum_probs=74.8
Q ss_pred CCCCCeEEEECCCcchh---cc-CCCCCCeEEEEeCCHHHHhhCCCC-------------CcEEEecCCCCCCCCCCCCc
Q 021661 146 NTPGVSILDLCSSWVSH---FP-PGYKQDRIVGMGMNEEELKRNPVL-------------TEYVVQDLNLNPKLPFEDNS 208 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~---~~-~~~~~~~v~giD~S~~~l~~a~~~-------------i~~~~~D~~~~~~lp~~~~s 208 (309)
..++.+|||||||+|.. +. ...+.++|+++|+++++++.|+++ +.+.++|+ ...+.++++
T Consensus 74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~---~~~~~~~~~ 150 (224)
T d1i1na_ 74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG---RMGYAEEAP 150 (224)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG---GGCCGGGCC
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec---ccccchhhh
Confidence 35689999999999943 22 234678999999999999987653 57788998 666667789
Q ss_pred eeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 209 FDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 209 fDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
||+|++..+++++++ ++.+.|||||.|++-+..
T Consensus 151 fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv~~ 183 (224)
T d1i1na_ 151 YDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPVGP 183 (224)
T ss_dssp EEEEEECSBBSSCCH------HHHHTEEEEEEEEEEESC
T ss_pred hhhhhhhcchhhcCH------HHHhhcCCCcEEEEEEcc
Confidence 999999999998763 578999999999886643
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.36 E-value=1.7e-12 Score=114.86 Aligned_cols=170 Identities=14% Similarity=0.223 Sum_probs=108.6
Q ss_pred chhhHHHhhcchhhhhhhCCC-CCCCCCCChhHHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCCe
Q 021661 73 NSLIASARQRGAVEQVLKDVQ-WPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGVS 151 (309)
Q Consensus 73 r~~~~~~~~~~~v~~v~~~~~-w~~~~p~~~e~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 151 (309)
+.+..+.....|+.++..... |. .++.-.... +..+-..+ .+.+....... ..+.+
T Consensus 55 ~~~~~rr~~g~PlqYI~G~~~F~~----------~~~~v~~~V-------lIPRpeTE---~lv~~~l~~~~---~~~~~ 111 (274)
T d2b3ta1 55 DALLTRRRDGEPIAHLTGVREFWS----------LPLFVSPAT-------LIPRPDTE---CLVEQALARLP---EQPCR 111 (274)
T ss_dssp HHHHHHHHTTCCHHHHSCEEEETT----------EEEECCTTS-------CCCCTTHH---HHHHHHHHHSC---SSCCE
T ss_pred HHHHHHHhcCcChhhhcCcEEEee----------eEEEEeccc-------cccccchh---hhhhhHhhhhc---ccccc
Confidence 334444556678888888776 22 112222222 22222222 22333333333 34679
Q ss_pred EEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCCCCCCCCceeEEEecc----
Q 021661 152 ILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPKLPFEDNSFDVITNVV---- 216 (309)
Q Consensus 152 ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~lp~~~~sfDlVis~~---- 216 (309)
|||+|||+|. .+....|..+|+++|+|+.+++.|++| ++++++|+. . ++++++||+|+|+-
T Consensus 112 vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~---~-~~~~~~fDlIvsNPPYi~ 187 (274)
T d2b3ta1 112 ILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWF---S-ALAGQQFAMIVSNPPYID 187 (274)
T ss_dssp EEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTT---G-GGTTCCEEEEEECCCCBC
T ss_pred eeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccc---c-ccCCCceeEEEecchhhh
Confidence 9999999884 344557889999999999999988764 788999982 2 34567899999972
Q ss_pred ---------chhccC------------CHHHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHHHH
Q 021661 217 ---------SVDYLT------------KPIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAYFH 275 (309)
Q Consensus 217 ---------vl~~l~------------d~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~f~ 275 (309)
++.|-+ ...++++++.+.|+|||.++++... ++...+.+++.
T Consensus 188 ~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~-----------------~q~~~v~~~l~ 250 (274)
T d2b3ta1 188 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-----------------QQGEAVRQAFI 250 (274)
T ss_dssp TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-----------------SCHHHHHHHHH
T ss_pred hhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc-----------------hHHHHHHHHHH
Confidence 122211 1357899999999999999998542 22234455564
Q ss_pred HhCCCCCCceee
Q 021661 276 YAGGYEPPQAVD 287 (309)
Q Consensus 276 ~~~Gf~~~~~~~ 287 (309)
..||..++++.
T Consensus 251 -~~gf~~i~~~k 261 (274)
T d2b3ta1 251 -LAGYHDVETCR 261 (274)
T ss_dssp -HTTCTTCCEEE
T ss_pred -HCCCCeEEEEE
Confidence 47898877654
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.31 E-value=1.8e-12 Score=110.02 Aligned_cols=99 Identities=15% Similarity=0.119 Sum_probs=78.5
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCC--CCCCceeEEEec
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLP--FEDNSFDVITNV 215 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp--~~~~sfDlVis~ 215 (309)
...|||||||.|..+ +...|...++|+|+++.++..|.+ |+.++.+|+ ..+. ++++++|.|++.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da---~~l~~~~~~~~~~~i~i~ 108 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDG---SDLTDYFEDGEIDRLYLN 108 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCS---SCGGGTSCTTCCSEEEEE
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCH---HHHhhhccCCceehhccc
Confidence 458999999999543 455789999999999999886543 589999999 6654 678899999987
Q ss_pred cchhccCCH--------HHHHHHHHhhcccCcEEEEEecCcch
Q 021661 216 VSVDYLTKP--------IEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 216 ~vl~~l~d~--------~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
+.-.|.... ..+|+.+.++|||||.+.|.+.+...
T Consensus 109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y 151 (204)
T d1yzha1 109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGL 151 (204)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHH
T ss_pred ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccH
Confidence 765544321 68999999999999999887765443
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.8e-13 Score=123.20 Aligned_cols=94 Identities=16% Similarity=0.063 Sum_probs=75.0
Q ss_pred CCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC-----------------CCcEEEecCCCCCCCCCCC
Q 021661 147 TPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV-----------------LTEYVVQDLNLNPKLPFED 206 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~-----------------~i~~~~~D~~~~~~lp~~~ 206 (309)
.++.+|||||||+|... ....+..+++|+|+|+.|++.|++ +++++++|+ .++++.+
T Consensus 150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~---~~~~~~~ 226 (328)
T d1nw3a_ 150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF---LSEEWRE 226 (328)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT---TSHHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc---ccccccc
Confidence 56899999999999644 233556689999999999987653 378999999 7888766
Q ss_pred Cce--eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 207 NSF--DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 207 ~sf--DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..+ |+|+++ .+.|.+++.+.|.++.++|||||.++..
T Consensus 227 ~~~~advi~~~-~~~f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 227 RIANTSVIFVN-NFAFGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp HHHHCSEEEEC-CTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccCcceEEEEc-ceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence 555 566654 5667788899999999999999998764
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.22 E-value=5.4e-12 Score=114.46 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=80.7
Q ss_pred CCCeEEEECCCcchhcc-CC-CCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHFP-PG-YKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~-~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||||||+|.... .+ ....+|+|+|.|+ +++.|++ ++.++++|+ .++++++++||+|++..
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~---~~l~~~~~~~D~i~se~ 113 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL---EDVHLPFPKVDIIISEW 113 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---TTSCCSSSCEEEEEECC
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh---hhccCcccceeEEEEEe
Confidence 37899999999995432 22 2234899999997 4444432 378999999 88998899999999976
Q ss_pred chhcc---CCHHHHHHHHHhhcccCcEEEEE--------ecCcchhHHHhhhhhcCCCCc
Q 021661 217 SVDYL---TKPIEVFKEMCQVLKPGGLAIVS--------FSNRCFWTKAISIWTSTGDAD 265 (309)
Q Consensus 217 vl~~l---~d~~~~l~~i~rvLkpGG~lii~--------~~~~~~~~~~~~~w~~~~~~~ 265 (309)
+.+++ .....++..+.|+|||||.++-+ +.....+......|......+
T Consensus 114 ~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~~~~~~~~~v~~~~l~~~~~~~~~~~~G~d 173 (328)
T d1g6q1_ 114 MGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDSQYKDEKLNYWQDVYGFD 173 (328)
T ss_dssp CBTTBSTTCCHHHHHHHHHHHEEEEEEEESCEEEEEEEEECCHHHHHHHHHHTTCBTTBC
T ss_pred cceeeccchhHHHHHHHHHhccCCCeEEEeeecceeeecccCHHHHHHhccccccccccc
Confidence 66555 46788999999999999987522 122344455555666544333
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=6.3e-12 Score=113.72 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=72.5
Q ss_pred CCCCCeEEEECCCcchhc---c-CCCCCCeEEEEeCCHHHHhhCCCC-------------------CcEEEecCCCCCCC
Q 021661 146 NTPGVSILDLCSSWVSHF---P-PGYKQDRIVGMGMNEEELKRNPVL-------------------TEYVVQDLNLNPKL 202 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~---~-~~~~~~~v~giD~S~~~l~~a~~~-------------------i~~~~~D~~~~~~l 202 (309)
..++.+|||+|||+|... + ...+.++|+++|+++++++.|+++ +++...|+ ...
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di---~~~ 172 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI---SGA 172 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT---TCC
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch---hhc
Confidence 366999999999999542 2 235788999999999999987653 67888898 444
Q ss_pred --CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 203 --PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 203 --p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.+++.+||.|+. .+++|..++.++.++|||||.+++-.|+-
T Consensus 173 ~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 173 TEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp C-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred ccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 245678999985 46788899999999999999998877753
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.17 E-value=9.1e-12 Score=106.99 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=70.3
Q ss_pred CCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCceeEEEeccchh
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVD 219 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~ 219 (309)
.++.+|||||||+|... ..+....+|+++|+++++++.|++ ++.++.+|. .....+.++||+|++..+++
T Consensus 69 ~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~---~~g~~~~~pfD~Iiv~~a~~ 145 (224)
T d1vbfa_ 69 HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDG---TLGYEEEKPYDRVVVWATAP 145 (224)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCG---GGCCGGGCCEEEEEESSBBS
T ss_pred cccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCch---hhcchhhhhHHHHHhhcchh
Confidence 66899999999999432 222235799999999999997765 378899997 44333467899999999988
Q ss_pred ccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 220 YLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 220 ~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++++ .+.+.|||||.|++-+.
T Consensus 146 ~ip~------~l~~qLk~GGrLV~pvg 166 (224)
T d1vbfa_ 146 TLLC------KPYEQLKEGGIMILPIG 166 (224)
T ss_dssp SCCH------HHHHTEEEEEEEEEEEC
T ss_pred hhhH------HHHHhcCCCCEEEEEEc
Confidence 8763 46688999999887543
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.7e-11 Score=108.85 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=72.1
Q ss_pred CCCCeEEEECCCcchhc-cCCCCC-CeEEEEeCCHHHHhhCC--------CCCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHF-PPGYKQ-DRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~~~~~~-~~v~giD~S~~~l~~a~--------~~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||||||+|... ..+..+ .+|+|+|.|+.|....+ .++.++++|+ ++++.++++||+|++..
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~---~~l~~~~~~~D~Ivse~ 110 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKI---EEVHLPVEKVDVIISEW 110 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCT---TTSCCSCSCEEEEEECC
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeH---HHhcCccccceEEEEee
Confidence 34789999999998543 222223 58999999998864321 1388999999 88988889999999987
Q ss_pred chhccC---CHHHHHHHHHhhcccCcEEEE
Q 021661 217 SVDYLT---KPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 217 vl~~l~---d~~~~l~~i~rvLkpGG~lii 243 (309)
+.+++. .++.++....+.|||||.++.
T Consensus 111 ~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 111 MGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 666663 356788888999999998764
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.16 E-value=3e-11 Score=101.37 Aligned_cols=95 Identities=17% Similarity=0.202 Sum_probs=69.7
Q ss_pred CCCeEEEECCCcchh-------cc----CCCCCCeEEEEeCCHHHHhhCCCC----------------------------
Q 021661 148 PGVSILDLCSSWVSH-------FP----PGYKQDRIVGMGMNEEELKRNPVL---------------------------- 188 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~-------~~----~~~~~~~v~giD~S~~~l~~a~~~---------------------------- 188 (309)
+..+|+++|||+|.- +. ......+|+|+|+|+.+++.|++.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 367999999999831 11 112234899999999999987642
Q ss_pred -----------CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH--HHHHHHHHhhcccCcEEEEE
Q 021661 189 -----------TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP--IEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 189 -----------i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~--~~~l~~i~rvLkpGG~lii~ 244 (309)
+.+.+.+.. ...+.+.+.||+|+|-+||.++++. .++++++++.|+|||+|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLL--EKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTT--CSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhcc--ccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 223344431 1222345789999999999999765 68999999999999999986
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=1.5e-11 Score=110.85 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=71.7
Q ss_pred CCCeEEEECCCcchhc-cCCCCC-CeEEEEeCCHHHHhhCC--------CCCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQ-DRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~-~~v~giD~S~~~l~~a~--------~~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
++.+|||||||+|... ..+..+ .+|+|+|.|+.+....+ .++.++++|+ .+++++.++||+|++..+
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~---~~~~~~~~~~D~ivs~~~ 109 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV---EEVELPVEKVDIIISEWM 109 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCT---TTCCCSSSCEEEEEECCC
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccH---HHcccccceeEEEeeeee
Confidence 3789999999999543 222233 48999999986543211 1388999999 889888899999999776
Q ss_pred hhcc---CCHHHHHHHHHhhcccCcEEEE
Q 021661 218 VDYL---TKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 218 l~~l---~d~~~~l~~i~rvLkpGG~lii 243 (309)
.+++ ...+.++..+.++|||||.++-
T Consensus 110 ~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 110 GYCLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 6655 3578999999999999998763
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.15 E-value=4.4e-10 Score=97.54 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=98.2
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhccC
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLT 222 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~ 222 (309)
...+|||||||.|.. +...+|..+++..|+ +..++.+.. +++++.+|.. +.+| ..|+|++..+||+.+
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~gd~~--~~~p----~~D~~~l~~vLh~~~ 153 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMF--ASVP----QGDAMILKAVCHNWS 153 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTT--TCCC----CEEEEEEESSGGGSC
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEecCCcc--cccc----cceEEEEehhhhhCC
Confidence 357999999998843 456789999999998 667776654 4899999983 3333 359999999999997
Q ss_pred CH--HHHHHHHHhhcccCcEEEE-Ee--cC-cc-hhH----HHhh---hhhcCCCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 223 KP--IEVFKEMCQVLKPGGLAIV-SF--SN-RC-FWT----KAIS---IWTSTGDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 223 d~--~~~l~~i~rvLkpGG~lii-~~--~~-~~-~~~----~~~~---~w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
|. .++|+++++.|+|||.++| +. +. +. ... ..++ .....+......-+.+++ .++||+.++++..
T Consensus 154 de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~g~ert~~e~~~ll-~~AGF~~v~v~~~ 232 (244)
T d1fp1d2 154 DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLS-KLSGFSKFQVACR 232 (244)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHH-HHTTCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhCCCcCCCHHHHHHHH-HHcCCCceEEEec
Confidence 64 4789999999999996654 43 21 11 111 1111 111222222233445555 5699999888764
Q ss_pred cCCCCCCCCcEEEEEEe
Q 021661 289 SPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 289 ~~~~~~~~p~~~v~a~k 305 (309)
.. .++-+|-+||
T Consensus 233 ~~-----~~~~viE~~K 244 (244)
T d1fp1d2 233 AF-----NSLGVMEFYK 244 (244)
T ss_dssp ET-----TTEEEEEEEC
T ss_pred CC-----CCEEEEEEeC
Confidence 44 4667888887
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.06 E-value=1e-10 Score=100.32 Aligned_cols=92 Identities=24% Similarity=0.179 Sum_probs=71.6
Q ss_pred CCCCCeEEEECCCcchhc---cC------CCCCCeEEEEeCCHHHHhhCCCC-------------CcEEEecCCCCCCCC
Q 021661 146 NTPGVSILDLCSSWVSHF---PP------GYKQDRIVGMGMNEEELKRNPVL-------------TEYVVQDLNLNPKLP 203 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g~~~---~~------~~~~~~v~giD~S~~~l~~a~~~-------------i~~~~~D~~~~~~lp 203 (309)
..++.+|||||||+|... .. ..+..+|+++|+++++++.|+++ +.+.++|. ....
T Consensus 78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~---~~~~ 154 (223)
T d1r18a_ 78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG---RKGY 154 (223)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG---GGCC
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccc---cccc
Confidence 356899999999999432 11 13456899999999999988653 67899998 5544
Q ss_pred CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 204 FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 204 ~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
.+.+.||+|++..+++++++ .+.+.|||||.+++-+.
T Consensus 155 ~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 155 PPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPVG 191 (223)
T ss_dssp GGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred ccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEEe
Confidence 45678999999999988764 46789999999987654
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=6.6e-11 Score=109.76 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=66.7
Q ss_pred CCCCeEEEECCCcchhccC---CCCCCeEEEEeCCHHHHhhCCCCC-----------------cE-EEecCCCCCCCCC-
Q 021661 147 TPGVSILDLCSSWVSHFPP---GYKQDRIVGMGMNEEELKRNPVLT-----------------EY-VVQDLNLNPKLPF- 204 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~---~~~~~~v~giD~S~~~l~~a~~~i-----------------~~-~~~D~~~~~~lp~- 204 (309)
.++.+|||||||+|..... ..+..+|+|||+|+.|++.|+++. .+ ..++. ...+.
T Consensus 215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f---~~~~~~ 291 (406)
T d1u2za_ 215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF---VDNNRV 291 (406)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS---TTCHHH
T ss_pred CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeech---hhcccc
Confidence 6689999999999965432 344568999999999999887641 11 12222 12111
Q ss_pred --CCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 205 --EDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 205 --~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.-...|+|+++. +.|.++..+.|.++.+.|||||.++..
T Consensus 292 d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 292 AELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp HHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred ccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 112467888764 557788899999999999999988764
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.98 E-value=1.8e-10 Score=98.06 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++.+|||||||+|... ....-+.+|+++|.++.+++.+++ ++.++++|. .....+.+.||.|++..
T Consensus 77 ~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~---~~g~~~~~pfD~Iiv~~ 153 (215)
T d1jg1a_ 77 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDG---SKGFPPKAPYDVIIVTA 153 (215)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCG---GGCCGGGCCEEEEEECS
T ss_pred CccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECcc---ccCCcccCcceeEEeec
Confidence 56899999999998432 221224679999999999988775 378999998 44444567899999999
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++.++++ .+...|||||.+++-+.
T Consensus 154 a~~~ip~------~l~~qL~~gGrLv~pv~ 177 (215)
T d1jg1a_ 154 GAPKIPE------PLIEQLKIGGKLIIPVG 177 (215)
T ss_dssp BBSSCCH------HHHHTEEEEEEEEEEEC
T ss_pred ccccCCH------HHHHhcCCCCEEEEEEc
Confidence 9988764 36678999999887554
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.89 E-value=7.5e-11 Score=106.41 Aligned_cols=98 Identities=18% Similarity=0.137 Sum_probs=72.8
Q ss_pred CCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCCCCC----CCCCCCceeEEEe
Q 021661 148 PGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNLNPK----LPFEDNSFDVITN 214 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~~~~----lp~~~~sfDlVis 214 (309)
++.+|||+|||+|... ..+....+|+++|+|+.+++.++++ ++++++|+ .+ ++...++||+|++
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~---~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANA---FDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCH---HHHHHHHHHTTCCEEEEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccH---HHHhhhhHhhhcCCCEEEE
Confidence 3789999999988543 2233456999999999999988764 67889987 33 3345678999997
Q ss_pred ccc---------hhccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 215 VVS---------VDYLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 215 ~~v---------l~~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.-- .....+..+++..+.++|||||.|+++..++
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 531 1112345678999999999999998877654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.89 E-value=2.9e-10 Score=102.70 Aligned_cols=101 Identities=16% Similarity=0.197 Sum_probs=71.6
Q ss_pred CCCeEEEECCCcchhcc-CC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCC-CCCCCCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSHFP-PG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLN-PKLPFEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~-~~lp~~~~sfDlVis~ 215 (309)
++.+|||+|||+|.... .+ ....+|+++|+|+.+++.+++| ++++++|+... ..++....+||+|++.
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 38899999999885432 22 2234899999999999988764 67889997210 1123346789999985
Q ss_pred cchh---------ccCCHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 216 VSVD---------YLTKPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 216 ~vl~---------~l~d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
---. ...+..+++..+.++|||||.|++.+..+
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 3111 11235678899999999999998887654
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.80 E-value=4.2e-09 Score=92.45 Aligned_cols=151 Identities=7% Similarity=0.043 Sum_probs=88.6
Q ss_pred cchhhHHHhhcchhhhhhhCCC-CCCCCCCChhHHhhccCCCCcccccCCcccccCCHHHHHHHHHHHHhhCCCCCCCCC
Q 021661 72 ANSLIASARQRGAVEQVLKDVQ-WPEQFPFKEEDFQRFDESPDSLFYETPRFVTHIDDPAIAALTKYYSEVFPPSNTPGV 150 (309)
Q Consensus 72 ~r~~~~~~~~~~~v~~v~~~~~-w~~~~p~~~e~f~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 150 (309)
++.+..++....|+.++..... |. .++.-+.... .||..++ .......+.... .+..
T Consensus 55 ~~~~i~rR~~~~Pl~YI~g~~~F~~----------~~f~v~~~vl---IPRpeTE---~lv~~~~~~~~~------~~~~ 112 (271)
T d1nv8a_ 55 ILELVEKRASGYPLHYILGEKEFMG----------LSFLVEEGVF---VPRPETE---ELVELALELIRK------YGIK 112 (271)
T ss_dssp HHHHHHHHHTTCCHHHHHTEEEETT----------EEEECCTTSC---CCCTTHH---HHHHHHHHHHHH------HTCC
T ss_pred HHHHHHHhhCCCChhhhcCcEEEee----------eEEEEecCcc---Cchhhhh---hhhhhhhhhhcc------cccc
Confidence 3445555666779999988776 44 2222222222 2333222 112222222222 1245
Q ss_pred eEEEECCCcchh--ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc---
Q 021661 151 SILDLCSSWVSH--FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV--- 216 (309)
Q Consensus 151 ~ILDiGcG~g~~--~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~--- 216 (309)
++||+|||+|.. .....+..+|+++|+|+.+++.|++| +.+..+|+. ..++...++||+|+|+-
T Consensus 113 ~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~--~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 113 TVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL--EPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp EEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT--GGGGGGTTTCCEEEECCCCB
T ss_pred EEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccc--cccccccCcccEEEEccccc
Confidence 899999998832 22245788999999999999998875 345667762 22333447899999982
Q ss_pred ----chhc-c-CCHH----------HHHH-HHHhhcccCcEEEEEec
Q 021661 217 ----SVDY-L-TKPI----------EVFK-EMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 217 ----vl~~-l-~d~~----------~~l~-~i~rvLkpGG~lii~~~ 246 (309)
.+.. + .+|. .+++ -+.+.|+|||.++++..
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig 237 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG 237 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0110 0 1221 2222 25678999999999965
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.80 E-value=2.3e-08 Score=86.38 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=88.1
Q ss_pred CCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 149 GVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
..+|||||||.|.. +...+|..+++..|+ +..++.+.. +++++.+|.. + +.+ .+|++++..+||+.+|
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~rv~~~~gD~f---~-~~p--~aD~~~l~~vLHdw~d 153 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMF---T-SIP--NADAVLLKYILHNWTD 153 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTT---T-CCC--CCSEEEEESCGGGSCH
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcccCceEEEecCcc---c-CCC--CCcEEEEEeecccCCh
Confidence 46899999998854 456789999999999 667777654 4899999983 2 222 4799999999999987
Q ss_pred H--HHHHHHHHhhcccC---cEE-EEEe--cCc--chhHH----Hhhh--hhcCCCCchhHhHHHHHHHhCCCCCCceee
Q 021661 224 P--IEVFKEMCQVLKPG---GLA-IVSF--SNR--CFWTK----AISI--WTSTGDADHVMIVGAYFHYAGGYEPPQAVD 287 (309)
Q Consensus 224 ~--~~~l~~i~rvLkpG---G~l-ii~~--~~~--~~~~~----~~~~--w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~ 287 (309)
. .++|+++++.|+|| |.+ +++. +.. ..... .+.. ....+......-+.+++ +++||+.+++..
T Consensus 154 ~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~~~G~ert~~e~~~ll-~~AGf~~~~i~~ 232 (244)
T d1fp2a2 154 KDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLF-IEAGFQHYKISP 232 (244)
T ss_dssp HHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGGGTCCCEEHHHHHHHH-HHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHhCCCcCCCHHHHHHHH-HHcCCceEEEEE
Confidence 6 47999999999998 544 4442 111 11111 1111 11122222244455556 458999887754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.79 E-value=4.1e-10 Score=90.62 Aligned_cols=98 Identities=9% Similarity=0.016 Sum_probs=68.9
Q ss_pred CCCeEEEECCCcchhcc-CC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCC-CCCCCCceeEEEec
Q 021661 148 PGVSILDLCSSWVSHFP-PG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPK-LPFEDNSFDVITNV 215 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~-~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~-lp~~~~sfDlVis~ 215 (309)
++.+|||+|||+|.... .+ +...+|+++|.++.+++.++++ ++++++|+ .. ++...++||+|++.
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~---~~~l~~~~~~fDiIf~D 90 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEA---ERAIDCLTGRFDLVFLD 90 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCH---HHHHHHBCSCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccc---cccccccccccceeEec
Confidence 38899999999995432 22 3335999999999999876543 78889998 33 44557889999986
Q ss_pred cchhccCCHHHHHHHHH--hhcccCcEEEEEecCcc
Q 021661 216 VSVDYLTKPIEVFKEMC--QVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~--rvLkpGG~lii~~~~~~ 249 (309)
--.. -......+..+. ++|+|||.++++.....
T Consensus 91 PPy~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~~ 125 (152)
T d2esra1 91 PPYA-KETIVATIEALAAKNLLSEQVMVVCETDKTV 125 (152)
T ss_dssp CSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred hhhc-cchHHHHHHHHHHCCCcCCCeEEEEEeCCCC
Confidence 3211 112345555553 57999999999976543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.78 E-value=1.8e-09 Score=88.56 Aligned_cols=116 Identities=15% Similarity=0.119 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCC
Q 021661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNL 198 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~ 198 (309)
.....+.+.+++...++. +.+|||+|||+|... ..+..+++++++|.|+.+++.++++ .++...|.+.
T Consensus 24 ~~~v~e~lf~~l~~~~~~----g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~ 99 (171)
T d1ws6a1 24 PVRLRKALFDYLRLRYPR----RGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEV 99 (171)
T ss_dssp CHHHHHHHHHHHHHHCTT----CCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHH
T ss_pred cHHHHHHHHHHhhccccC----CCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhc
Confidence 344556777777776654 789999999998543 3334577999999999999988765 2344444310
Q ss_pred C-CCCCCCCCceeEEEeccchhccCCHHHHHHHH--HhhcccCcEEEEEecCc
Q 021661 199 N-PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEM--CQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 199 ~-~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i--~rvLkpGG~lii~~~~~ 248 (309)
. ........+||+|++.--... +..+.+.++ ..+|+|||.++++.+..
T Consensus 100 ~~~~~~~~~~~fD~If~DPPY~~--~~~~~l~~l~~~~ll~~~g~ivie~~~~ 150 (171)
T d1ws6a1 100 FLPEAKAQGERFTVAFMAPPYAM--DLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHHHHHHTTCCEEEEEECCCTTS--CTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred ccccccccCCccceeEEcccccc--CHHHHHHHHHHcCCcCCCeEEEEEecCC
Confidence 0 011234568999998643221 233344444 35799999999987653
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.78 E-value=1.9e-09 Score=94.23 Aligned_cols=89 Identities=13% Similarity=0.100 Sum_probs=67.9
Q ss_pred CCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 148 PGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
++.+|||+|||+|.... .....++|+++|+|+.+++.++++ ++++++|+ ..++. .+.||.|++..
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~---~~~~~-~~~~D~Ii~~~ 182 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---RDFPG-ENIADRILMGY 182 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---TTCCC-CSCEEEEEECC
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch---HHhcc-CCCCCEEEECC
Confidence 38999999999885432 223446999999999999877653 78899999 66653 46799998753
Q ss_pred chhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 217 SVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+....++.++.++|||||.+.+.
T Consensus 183 ----p~~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 183 ----VVRTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp ----CSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred ----CCchHHHHHHHHhhcCCCCEEEEE
Confidence 234457888899999999988553
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.75 E-value=1.5e-09 Score=90.73 Aligned_cols=94 Identities=21% Similarity=0.200 Sum_probs=71.9
Q ss_pred CCCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCC-------CCcEEEecCCCCCCCC-----CCCCceeE
Q 021661 147 TPGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPV-------LTEYVVQDLNLNPKLP-----FEDNSFDV 211 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~-------~i~~~~~D~~~~~~lp-----~~~~sfDl 211 (309)
.++..+||++||+|.+ +....+.++|+|+|.++.|++.+++ ++.+++++. .++. +..++||.
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f---~~~~~~~~~~~~~~vdg 98 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---READFLLKTLGIEKVDG 98 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---GGHHHHHHHTTCSCEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHH---hhHHHHHHHcCCCCcce
Confidence 5688999999998854 3444678999999999999998765 367888887 4432 34578999
Q ss_pred EEeccch---------hccCCHHHHHHHHHhhcccCcEEEE
Q 021661 212 ITNVVSV---------DYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 212 Vis~~vl---------~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
|+....+ ..+....+.|..+.++|+|||.+++
T Consensus 99 Il~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~i 139 (192)
T d1m6ya2 99 ILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVV 139 (192)
T ss_dssp EEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEE
T ss_pred eeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeee
Confidence 9876543 2234457899999999999997654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.69 E-value=6.1e-08 Score=83.55 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=86.9
Q ss_pred CCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCC--CCcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 149 GVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPV--LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 149 ~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~--~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
..+|||||||.|. .+..++|..++++.|+.+ .++.++. +++++.+|.. +.+| . .|+++...++|..++
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~~~r~~~~~~d~~--~~~P--~--ad~~~l~~vlh~~~d 154 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPSYPGVEHVGGDMF--VSIP--K--ADAVFMKWICHDWSD 154 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCCCTTEEEEECCTT--TCCC--C--CSCEECSSSSTTSCH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcccCCceEEeccccc--ccCC--C--cceEEEEEEeecCCH
Confidence 5799999999884 456678999999999954 4555544 4889999983 3333 3 477888889998865
Q ss_pred --HHHHHHHHHhhcccCcEEEEE-e--cC--cch-hH---HHhhh--h--hcCCCCchhHhHHHHHHHhCCCCCCceeec
Q 021661 224 --PIEVFKEMCQVLKPGGLAIVS-F--SN--RCF-WT---KAISI--W--TSTGDADHVMIVGAYFHYAGGYEPPQAVDI 288 (309)
Q Consensus 224 --~~~~l~~i~rvLkpGG~lii~-~--~~--~~~-~~---~~~~~--w--~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~ 288 (309)
...+|+++++.|+|||.++|. . +. ... .. ..++. . ...+......-+.+++ +++||+.++++..
T Consensus 155 ~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll-~~AGf~~vkv~~~ 233 (243)
T d1kyza2 155 EHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLA-KGAGFQGFKVHCN 233 (243)
T ss_dssp HHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHH-HHHCCSCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHH-HHcCCCcEEEEEe
Confidence 468999999999999965543 2 11 111 11 11111 1 1122222234455566 4589999988754
Q ss_pred c
Q 021661 289 S 289 (309)
Q Consensus 289 ~ 289 (309)
.
T Consensus 234 ~ 234 (243)
T d1kyza2 234 A 234 (243)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.67 E-value=4e-09 Score=94.78 Aligned_cols=99 Identities=14% Similarity=0.122 Sum_probs=71.4
Q ss_pred CCeEEEECCCcchhccC-CC-CCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCC---CCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHFPP-GY-KQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL---PFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~~-~~-~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~l---p~~~~sfDlVi 213 (309)
+.+|||++||+|..... +. ...+|+++|+|+.+++.+++| ++++++|+. ..+ ....++||+|+
T Consensus 145 g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~--~~l~~~~~~~~~fD~Ii 222 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF--DYFKYARRHHLTYDIII 222 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH--HHHHHHHHTTCCEEEEE
T ss_pred CCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHH--HHHHHHHhhcCCCCEEE
Confidence 88999999998865432 22 334899999999999877653 678999982 112 22456899999
Q ss_pred ecc---------chhccCCHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 214 NVV---------SVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 214 s~~---------vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
+.- ......+..++++.+.++|+|||.|+++...+.
T Consensus 223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~ 267 (317)
T d2b78a2 223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 267 (317)
T ss_dssp ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 742 111123456799999999999999999876543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.63 E-value=6.4e-09 Score=87.02 Aligned_cols=65 Identities=9% Similarity=0.143 Sum_probs=51.4
Q ss_pred CCCCeEEEECCCcchhc-c-CCCCCCeEEEEeCCHHHHhhCCCC---CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHF-P-PGYKQDRIVGMGMNEEELKRNPVL---TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~-~-~~~~~~~v~giD~S~~~l~~a~~~---i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
-.+.+|||+|||+|... . ......+|+|+|+++.+++.|++| ++++++|+ ..++ ++||+|+++--
T Consensus 47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~---~~l~---~~fD~Vi~NPP 116 (197)
T d1ne2a_ 47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV---SEIS---GKYDTWIMNPP 116 (197)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCG---GGCC---CCEEEEEECCC
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEeh---hhcC---CcceEEEeCcc
Confidence 34889999999999542 2 223345899999999999988875 78999999 6654 67999999843
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.56 E-value=9.8e-09 Score=91.52 Aligned_cols=97 Identities=11% Similarity=0.102 Sum_probs=67.4
Q ss_pred CCeEEEECCCcchhc-cCCCCCCeEEEEeCCHHHHhhCCCC----------CcEEEecCCCCCCC---CCCCCceeEEEe
Q 021661 149 GVSILDLCSSWVSHF-PPGYKQDRIVGMGMNEEELKRNPVL----------TEYVVQDLNLNPKL---PFEDNSFDVITN 214 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-~~~~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~~~~~~l---p~~~~sfDlVis 214 (309)
+.+|||++||+|... ..+..+++|++||.|+.+++.|++| ++|+++|+. ..+ ....+.||+|++
T Consensus 133 ~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~--~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 133 PLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM--KFIQREERRGSTYDIILT 210 (309)
T ss_dssp CCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH--HHHHHHHHHTCCBSEEEE
T ss_pred CCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH--HhHHHHhhcCCCCCEEEE
Confidence 789999999988543 3334467999999999999988764 678899982 111 123568999997
Q ss_pred c---cc------hhccC-CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 V---VS------VDYLT-KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~---~v------l~~l~-d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
. +. ...+. +....+..+.++|+|||.+++.+.+
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 4 11 11122 3356777888999999966555443
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.54 E-value=3.7e-08 Score=83.43 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=66.0
Q ss_pred CCeEEEECCCcch---hccCC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC-----CCCCcee
Q 021661 149 GVSILDLCSSWVS---HFPPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP-----FEDNSFD 210 (309)
Q Consensus 149 ~~~ILDiGcG~g~---~~~~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp-----~~~~sfD 210 (309)
+.+|||+|||.|. .+..+ .++++|+++|+++.+++.|+++ ++++.+|.. +.+| +..++||
T Consensus 57 pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~--e~l~~l~~~~~~~~~D 134 (214)
T d2cl5a1 57 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQ--DLIPQLKKKYDVDTLD 134 (214)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH--HHGGGHHHHSCCCCEE
T ss_pred CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccc--ccccchhhcccccccc
Confidence 5799999998773 23344 3568999999999999887652 789999972 2222 3456899
Q ss_pred EEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 211 VITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 211 lVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+|+....-+ .......+.+..++|||||++++.
T Consensus 135 ~ifiD~~~~-~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 135 MVFLDHWKD-RYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EEEECSCGG-GHHHHHHHHHHTTCEEEEEEEEES
T ss_pred eeeeccccc-ccccHHHHHHHhCccCCCcEEEEe
Confidence 999863211 111234577888999999988775
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.54 E-value=1.6e-08 Score=83.51 Aligned_cols=113 Identities=11% Similarity=-0.054 Sum_probs=79.1
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccC-C-CCCCeEEEEeCCHHHHhhCCCC--------CcEEEecC
Q 021661 127 DDPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP-G-YKQDRIVGMGMNEEELKRNPVL--------TEYVVQDL 196 (309)
Q Consensus 127 ~~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~-~-~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~ 196 (309)
.....+.+.+++...+. +.+|||++||+|..... + +...+|+.+|.++.+++.++++ ..++..|+
T Consensus 27 ~~~vre~lfn~l~~~~~-----~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~ 101 (183)
T d2fpoa1 27 TDRVRETLFNWLAPVIV-----DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA 101 (183)
T ss_dssp CHHHHHHHHHHHHHHHT-----TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred cHHHHHHHHhhhhcccc-----hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecc
Confidence 34455666666666554 67999999999965432 2 3344899999999999876654 56777776
Q ss_pred CCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHh--hcccCcEEEEEecC
Q 021661 197 NLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQ--VLKPGGLAIVSFSN 247 (309)
Q Consensus 197 ~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~r--vLkpGG~lii~~~~ 247 (309)
. ..+.....+||+|++.--.. .....+.+..+.+ +|+|+|+++++...
T Consensus 102 ~--~~l~~~~~~fDlIf~DPPY~-~~~~~~~l~~l~~~~~L~~~~iIiiE~~~ 151 (183)
T d2fpoa1 102 M--SFLAQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVESEV 151 (183)
T ss_dssp H--HHHSSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred c--ccccccccccCEEEEcCccc-cchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 2 22344567899999975432 2345677777765 69999999998653
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.2e-08 Score=83.35 Aligned_cols=104 Identities=18% Similarity=0.186 Sum_probs=75.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcch---hccCCC-CCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCC
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVS---HFPPGY-KQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNL 198 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~---~~~~~~-~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~ 198 (309)
.++...+.+... ..+|||||||+|. .++.+. ++++|+.+|.+++..+.|+++ ++++.+|+.
T Consensus 48 g~lL~~L~~~~~-----~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~- 121 (219)
T d2avda1 48 AQLLANLARLIQ-----AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL- 121 (219)
T ss_dssp HHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH-
T ss_pred HHHHHHHHHccC-----CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehh-
Confidence 444455555544 6799999999883 234443 478999999999998877653 788899872
Q ss_pred CCCCC-----CCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 199 NPKLP-----FEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 199 ~~~lp-----~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+.++ ...++||+|+...-= .+....++.+.+.|+|||.+++.-
T Consensus 122 -e~l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 122 -ETLDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp -HHHHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred -hcchhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeC
Confidence 2222 235689999986422 356788899999999999999863
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=2.3e-07 Score=80.21 Aligned_cols=125 Identities=6% Similarity=-0.109 Sum_probs=76.9
Q ss_pred CCCeEEEECCCcchh---ccCCCCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCC--CCC-CCCCCceeEE
Q 021661 148 PGVSILDLCSSWVSH---FPPGYKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLN--PKL-PFEDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~--~~l-p~~~~sfDlV 212 (309)
+..++||||||+|.. +....+..+++|+|+|+++++.|+++ +.++..+.... ..+ ...+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 457999999998843 34445788999999999999998875 44555554110 111 1235689999
Q ss_pred EeccchhccCC-----------------------------------HHHHHHHHHhhcccCcEEEEEecCcchhHHHhhh
Q 021661 213 TNVVSVDYLTK-----------------------------------PIEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISI 257 (309)
Q Consensus 213 is~~vl~~l~d-----------------------------------~~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~ 257 (309)
+|+--.....+ ..+++++..+.++..|++...+.
T Consensus 141 vsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig----------- 209 (250)
T d2h00a1 141 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQLKKRLRWYSCMLG----------- 209 (250)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHHHHGGGBSCEEEEES-----------
T ss_pred EecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHHHHhhcCcEEEEEec-----------
Confidence 99843322110 23345555666777776655443
Q ss_pred hhcCCCCchhHhHHHHHHHhCCCCCCceeecc
Q 021661 258 WTSTGDADHVMIVGAYFHYAGGYEPPQAVDIS 289 (309)
Q Consensus 258 w~~~~~~~h~~~~~~~f~~~~Gf~~~~~~~~~ 289 (309)
..++...+.+.+ ...|+..++++...
T Consensus 210 -----~~~~l~~i~~~L-~~~g~~~i~~ie~~ 235 (250)
T d2h00a1 210 -----KKCSLAPLKEEL-RIQGVPKVTYTEFC 235 (250)
T ss_dssp -----STTSHHHHHHHH-HHTTCSEEEEEEEE
T ss_pred -----chhhHHHHHHHH-HHcCCCeEEEEEec
Confidence 234444455555 44788777666543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.44 E-value=2.3e-08 Score=82.53 Aligned_cols=112 Identities=17% Similarity=0.109 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhcc-CCCC-CCeEEEEeCCHHHHhhCCCC---------CcEEEecC
Q 021661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFP-PGYK-QDRIVGMGMNEEELKRNPVL---------TEYVVQDL 196 (309)
Q Consensus 128 ~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~-~~~~-~~~v~giD~S~~~l~~a~~~---------i~~~~~D~ 196 (309)
....+.+.+++...+ ++.+|||++||+|.... .+.. ..+|+++|.++.+++.++++ ++++++|+
T Consensus 26 ~~vrealFn~l~~~~-----~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~ 100 (182)
T d2fhpa1 26 DKVKESIFNMIGPYF-----DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA 100 (182)
T ss_dssp HHHHHHHHHHHCSCC-----SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred HHHHHHHHHHHHHhc-----CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Confidence 344555555554333 37899999999996443 2223 34899999999999877653 67888887
Q ss_pred CCCCC-CC---CCCCceeEEEeccchhccCCHHHHHHHHHh--hcccCcEEEEEecCc
Q 021661 197 NLNPK-LP---FEDNSFDVITNVVSVDYLTKPIEVFKEMCQ--VLKPGGLAIVSFSNR 248 (309)
Q Consensus 197 ~~~~~-lp---~~~~sfDlVis~~vl~~l~d~~~~l~~i~r--vLkpGG~lii~~~~~ 248 (309)
.. ++ ....+||+|++.--.. ..+....+..+.. +|+|+|+++++....
T Consensus 101 ---~~~l~~~~~~~~~fDlIflDPPY~-~~~~~~~l~~i~~~~~L~~~giIi~E~~~~ 154 (182)
T d2fhpa1 101 ---NRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 154 (182)
T ss_dssp ---HHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred ---hhhhhhhcccCCCcceEEechhhh-hhHHHHHHHHHHHCCCCCCCEEEEEEcCCC
Confidence 32 22 2345799999864321 2456777888764 699999999987654
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.42 E-value=2.4e-07 Score=82.99 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=74.8
Q ss_pred HHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC--------CCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCC
Q 021661 133 ALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--------YKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLN 197 (309)
Q Consensus 133 ~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--------~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~ 197 (309)
.+.+++...+.. .++.+|||.|||+|..+..+ ....+++|+|+++.++..|+.+ ..+..+|.
T Consensus 104 ~m~~l~~~~~~~--~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~- 180 (328)
T d2f8la1 104 IVAYLLEKVIQK--KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDG- 180 (328)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCT-
T ss_pred HHHHHHHHHhCC--CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccc-
Confidence 344444444432 44679999999999665322 2345899999999999887643 56677776
Q ss_pred CCCCCCCCCCceeEEEeccchhccCC------------------HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 198 LNPKLPFEDNSFDVITNVVSVDYLTK------------------PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 198 ~~~~lp~~~~sfDlVis~~vl~~l~d------------------~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.. ....++||+|+++--+..... ...++..+.+.|||||.+++-+|+.
T Consensus 181 --~~-~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 181 --LA-NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp --TS-CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred --cc-ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 22 234568999999854322111 2347999999999999887777753
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.38 E-value=7.1e-08 Score=80.80 Aligned_cols=67 Identities=9% Similarity=0.060 Sum_probs=50.2
Q ss_pred CCCCeEEEECCCcchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
.++.+|||+|||+|.... ......+|+|+|+++.+++.++++ .+++.+|+ ..+ ++.||+|+++--
T Consensus 45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~---~~~---~~~fD~Vi~nPP 118 (201)
T d1wy7a1 45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDV---SEF---NSRVDIVIMNPP 118 (201)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCG---GGC---CCCCSEEEECCC
T ss_pred CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECch---hhh---CCcCcEEEEcCc
Confidence 458899999999995432 223345899999999999987764 57788887 444 457999999864
Q ss_pred hh
Q 021661 218 VD 219 (309)
Q Consensus 218 l~ 219 (309)
..
T Consensus 119 ~~ 120 (201)
T d1wy7a1 119 FG 120 (201)
T ss_dssp CS
T ss_pred cc
Confidence 43
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=9.5e-07 Score=77.65 Aligned_cols=144 Identities=17% Similarity=0.182 Sum_probs=86.5
Q ss_pred CCCCeEEEECCCcch---hccCCCCCCeEEEEeCCHHHHhhCCCC-------CcEEEecCCCCCCC-CCCCCceeEEEe-
Q 021661 147 TPGVSILDLCSSWVS---HFPPGYKQDRIVGMGMNEEELKRNPVL-------TEYVVQDLNLNPKL-PFEDNSFDVITN- 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~-------i~~~~~D~~~~~~l-p~~~~sfDlVis- 214 (309)
.++.+|||+|+|.|. .+......+.|+++|+++.-++..+++ ......+.. ... ....+.||.|+.
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~--~~~~~~~~~~fd~IL~D 178 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGR--YPSQWCGEQQFDRILLD 178 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTT--CTHHHHTTCCEEEEEEE
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeecccc--ccchhcccccccEEEEe
Confidence 568999999998662 233334568999999998766544332 223333320 111 123467999994
Q ss_pred -----ccchhccCCH----------------HHHHHHHHhhcccCcEEEEEecCcchhHHHhhhhhcCCCCchhHhHHHH
Q 021661 215 -----VVSVDYLTKP----------------IEVFKEMCQVLKPGGLAIVSFSNRCFWTKAISIWTSTGDADHVMIVGAY 273 (309)
Q Consensus 215 -----~~vl~~l~d~----------------~~~l~~i~rvLkpGG~lii~~~~~~~~~~~~~~w~~~~~~~h~~~~~~~ 273 (309)
..++..-++. .++|.++.+.|||||.++.++..-. ..+....+..+
T Consensus 179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~-------------~~ENE~vv~~~ 245 (284)
T d1sqga2 179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL-------------PEENSLQIKAF 245 (284)
T ss_dssp CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC-------------GGGTHHHHHHH
T ss_pred ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc-------------hhhCHHHHHHH
Confidence 2344332322 4788999999999999999887522 12233344444
Q ss_pred HHHhCCCCCCce-------eeccCCCCCCCCcEEEEEEe
Q 021661 274 FHYAGGYEPPQA-------VDISPNPGRSDPMYVVYSRK 305 (309)
Q Consensus 274 f~~~~Gf~~~~~-------~~~~~~~~~~~p~~~v~a~k 305 (309)
+++..+|+.... ...-|...+.|.||+..-+|
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~l~K 284 (284)
T d1sqga2 246 LQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK 284 (284)
T ss_dssp HHHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred HHhCCCcEEecCCCCCCCcEEECCCCCCcccEEEEEEEC
Confidence 444344443322 33344445678899988876
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.28 E-value=3.3e-07 Score=81.77 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=68.7
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC-------------CCcEEEecCCCCCCCCCCCCceeEE
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV-------------LTEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~-------------~i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
+.+||.||.|.|... ....+..+|+++|+++++++.+++ +++++.+|+. .-+.-.+++||+|
T Consensus 78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~--~~l~~~~~~yDvI 155 (312)
T d1uira_ 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDAR--AYLERTEERYDVV 155 (312)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHH--HHHHHCCCCEEEE
T ss_pred cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHH--HHhhhcCCcccEE
Confidence 689999999988543 333456799999999999987654 3678888983 2233345679999
Q ss_pred EeccchhccC-------CHHHHHHHHHhhcccCcEEEEEec
Q 021661 213 TNVVSVDYLT-------KPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 213 is~~vl~~l~-------d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
++-..=.+.. --.++++.+.+.|||||.+++...
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~ 196 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecC
Confidence 9643111110 126899999999999999988643
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.27 E-value=6.2e-07 Score=78.55 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=69.1
Q ss_pred CCCeEEEECCCcchhc--cCCCCCCeEEEEeCCHHHHhhCCC------------------CCcEEEecCCCCCCCCCCCC
Q 021661 148 PGVSILDLCSSWVSHF--PPGYKQDRIVGMGMNEEELKRNPV------------------LTEYVVQDLNLNPKLPFEDN 207 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~--~~~~~~~~v~giD~S~~~l~~a~~------------------~i~~~~~D~~~~~~lp~~~~ 207 (309)
++.+||.||+|.|..+ ....+..+|+++|+++++++.+++ +++++.+|+ ...--.++
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da---~~~l~~~~ 148 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDG---FEFIKNNR 148 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCH---HHHHHHCC
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChH---HHHHhccC
Confidence 3789999999977543 234455689999999999997753 367888887 32211356
Q ss_pred ceeEEEeccchhccCC-----HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 208 SFDVITNVVSVDYLTK-----PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 208 sfDlVis~~vl~~l~d-----~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
+||+|++-.. ..... -.++++.+.+.|+|||.+++...++
T Consensus 149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~ 193 (276)
T d1mjfa_ 149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSV 193 (276)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecCCc
Confidence 8999997432 22211 2589999999999999998865443
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.24 E-value=1.6e-06 Score=72.43 Aligned_cols=107 Identities=16% Similarity=0.269 Sum_probs=73.9
Q ss_pred HHHHHHhhCCCCCCCCCeEEEECCCcchhccC----CCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCce
Q 021661 134 LTKYYSEVFPPSNTPGVSILDLCSSWVSHFPP----GYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSF 209 (309)
Q Consensus 134 l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~----~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sf 209 (309)
+.+++...+.. .++.+|||.|||+|.++.. ......++|+|+++.++..++. ...+.+|. .... ....|
T Consensus 7 i~~~m~~l~~~--~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~-~~~~~~~~---~~~~-~~~~f 79 (223)
T d2ih2a1 7 VVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW-AEGILADF---LLWE-PGEAF 79 (223)
T ss_dssp HHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTT-EEEEESCG---GGCC-CSSCE
T ss_pred HHHHHHHhcCC--CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhccc-ceeeeeeh---hccc-ccccc
Confidence 35556666653 5678999999999965432 2345689999999998777654 46667776 3332 34679
Q ss_pred eEEEeccchhccC----------------------------C-HHHHHHHHHhhcccCcEEEEEecC
Q 021661 210 DVITNVVSVDYLT----------------------------K-PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 210 DlVis~~vl~~l~----------------------------d-~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|+|+++.-..... + ...++..+.+.|||||.+++-+++
T Consensus 80 d~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 80 DLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 146 (223)
T ss_dssp EEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence 9999874332210 1 236678899999999988777665
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.22 E-value=1.2e-06 Score=77.28 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=70.6
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+.+||-||.|.|..+ ....+..+|+++|+++++++.+++ +++++.+|+. .-+.-.++.||+|+
T Consensus 90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~--~~l~~~~~~yDvIi 167 (295)
T d1inla_ 90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGA--EYVRKFKNEFDVII 167 (295)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH--HHGGGCSSCEEEEE
T ss_pred CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHH--HHHhcCCCCCCEEE
Confidence 689999999977543 222345689999999999997764 3678888873 23333456899999
Q ss_pred eccchhcc-C----CHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 214 NVVSVDYL-T----KPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 214 s~~vl~~l-~----d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
+-..-... + --.++++.+.+.|+|||.+++...++.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~ 208 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPF 208 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChh
Confidence 75322111 1 136899999999999999998876543
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.21 E-value=5e-07 Score=76.89 Aligned_cols=91 Identities=14% Similarity=0.164 Sum_probs=69.0
Q ss_pred CCeEEEECCCcchh---ccCC-CCCCeEEEEeCCHHHHhhCCCC---------CcEEEecCCCCCCCC------CCCCce
Q 021661 149 GVSILDLCSSWVSH---FPPG-YKQDRIVGMGMNEEELKRNPVL---------TEYVVQDLNLNPKLP------FEDNSF 209 (309)
Q Consensus 149 ~~~ILDiGcG~g~~---~~~~-~~~~~v~giD~S~~~l~~a~~~---------i~~~~~D~~~~~~lp------~~~~sf 209 (309)
..+|||||+++|.. +..+ .+.++|+.+|.+++..+.|+++ ++++.+|+. +.++ ...++|
T Consensus 60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~--~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL--PVLDEMIKDEKNHGSY 137 (227)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHH--HHHHHHHHCGGGTTCB
T ss_pred CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHH--HHHHHHHhccccCCce
Confidence 67999999998832 2323 3478999999999988877653 788889882 2232 135689
Q ss_pred eEEEeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 210 DVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 210 DlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
|+|+.-.- -.+....++.+.+.|+|||.+++.
T Consensus 138 D~iFiDa~---k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 138 DFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp SEEEECSC---STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred eEEEeccc---hhhhHHHHHHHHhhcCCCcEEEEc
Confidence 99998641 145778999999999999999997
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.12 E-value=2.6e-06 Score=74.38 Aligned_cols=98 Identities=11% Similarity=0.057 Sum_probs=70.3
Q ss_pred CCeEEEECCCcchhcc--CC-CCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHFP--PG-YKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~~--~~-~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+.+||-||.|.|.... .. .+..+|+.+|+++++++.+++ +++++.+|+. .-+.-.+++||+|+
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~--~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGF--MHIAKSENQYDVIM 153 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSH--HHHHTCCSCEEEEE
T ss_pred cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHH--HHHhhcCCCCCEEE
Confidence 6899999999775442 23 345699999999999997754 3678888872 22333457899999
Q ss_pred eccchhcc--C--CHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 214 NVVSVDYL--T--KPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 214 s~~vl~~l--~--d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.-..-..- . --.++++.+.++|+|||.++....++
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~ 192 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP 192 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence 75321110 0 13689999999999999999876554
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.11 E-value=1.3e-06 Score=77.73 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=67.0
Q ss_pred CCCCeEEEECCCcch---hc-cCCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCCCCCceeEEEe
Q 021661 147 TPGVSILDLCSSWVS---HF-PPGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPFEDNSFDVITN 214 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~-~~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~~~~sfDlVis 214 (309)
.++.+|||+|||.|. .+ ......+.+++.|.++.-++..++ ++.....|. ..++..+..||.|+.
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~---~~~~~~~~~fD~ILv 191 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS---LHIGELNVEFDKILL 191 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG---GGGGGGCCCEEEEEE
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccc---cccccccccccEEEE
Confidence 568999999998663 22 223456799999999987765443 244455555 455555678999994
Q ss_pred c------cchhccCC----------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 215 V------VSVDYLTK----------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 215 ~------~vl~~l~d----------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
- .++..-++ ..+.|.++.+.|||||.++.++..
T Consensus 192 DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 192 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 2 23322221 147889999999999999998875
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=3e-06 Score=74.33 Aligned_cols=98 Identities=14% Similarity=0.065 Sum_probs=69.4
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCCCCCCceeEE
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDNSFDVI 212 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp~~~~sfDlV 212 (309)
.+.+||-||.|.|... ....+..+|+.+|+++++++.+++ +++.+.+|+. .-+.-..++||+|
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~--~~l~~~~~~yDvI 155 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGF--EFMKQNQDAFDVI 155 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHH--HHHHTCSSCEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHH--HHHhcCCCCCCEE
Confidence 3679999999977443 233346799999999999998764 3778888872 2233345689999
Q ss_pred EeccchhccC-----CHHHHHHHHHhhcccCcEEEEEecCc
Q 021661 213 TNVVSVDYLT-----KPIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 213 is~~vl~~l~-----d~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
++-. .+... .-.++++.+.+.|+|||.+++...++
T Consensus 156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 195 (285)
T d2o07a1 156 ITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQ 195 (285)
T ss_dssp EEEC-C-----------CHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEeccch
Confidence 9753 22111 12478999999999999999876554
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.01 E-value=6.8e-06 Score=72.21 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=70.9
Q ss_pred CCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCC-CCCCceeE
Q 021661 148 PGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLP-FEDNSFDV 211 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp-~~~~sfDl 211 (309)
.+.+||=||.|.|... ....+..+|+++|+++++++.+++ +++.+.+|+. ..+. ..+++||+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~--~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGV--AFLKNAAEGSYDA 157 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHH--HHHHTSCTTCEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHH--HHHhhccccCccE
Confidence 3679999999988544 233344689999999999998764 2678888862 2222 33568999
Q ss_pred EEeccchhccC-----CHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 212 ITNVVSVDYLT-----KPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 212 Vis~~vl~~l~-----d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
|+.-.. +... --.++++.+.+.|+|||.+++...++.
T Consensus 158 Ii~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~ 199 (290)
T d1xj5a_ 158 VIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW 199 (290)
T ss_dssp EEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred EEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcH
Confidence 997432 1111 126899999999999999999876543
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.00 E-value=3.5e-06 Score=74.73 Aligned_cols=99 Identities=13% Similarity=-0.000 Sum_probs=66.9
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCC------------CCcEEEecCCCCCCCCCCCCceeEEE
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPV------------LTEYVVQDLNLNPKLPFEDNSFDVIT 213 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~------------~i~~~~~D~~~~~~lp~~~~sfDlVi 213 (309)
+.+||-||.|.|..+ ....+..+|+.+|+++++++.+++ +++++.+|+. .-+....++||+|+
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~--~~l~~~~~~yDvII 184 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGF--EFLKNHKNEFDVII 184 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHH--HHHHHCTTCEEEEE
T ss_pred CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHH--HHHHhCCCCCCEEE
Confidence 679999999977543 222344699999999999997764 2566777762 22223456899999
Q ss_pred eccchhccC----CHHHHHHHHHhhcccCcEEEEEecCcc
Q 021661 214 NVVSVDYLT----KPIEVFKEMCQVLKPGGLAIVSFSNRC 249 (309)
Q Consensus 214 s~~vl~~l~----d~~~~l~~i~rvLkpGG~lii~~~~~~ 249 (309)
+-..-..-+ --.++++.+.++|+|||.++....++.
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~ 224 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVW 224 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEECCCTT
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChH
Confidence 753221111 125889999999999999998865543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.97 E-value=2.8e-06 Score=69.67 Aligned_cols=113 Identities=15% Similarity=0.097 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchhccCC--CCCCeEEEEeCCHHHHhhCCCC----------CcEEEecC
Q 021661 129 PAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSHFPPG--YKQDRIVGMGMNEEELKRNPVL----------TEYVVQDL 196 (309)
Q Consensus 129 ~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~--~~~~~v~giD~S~~~l~~a~~~----------i~~~~~D~ 196 (309)
...+.+.+.+...+. +.+|||+.||+|..-..+ +...+|+.+|.+...++..+++ ..+...|.
T Consensus 29 ~vrealFn~l~~~~~-----~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~ 103 (183)
T d2ifta1 29 RVKETLFNWLMPYIH-----QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSS 103 (183)
T ss_dssp HHHHHHHHHHHHHHT-----TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCH
T ss_pred HHHHHHHHHhhhhcc-----cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccc
Confidence 345566666665544 679999999999654333 3344999999999988765543 23334443
Q ss_pred CCCCCCCCCCCceeEEEeccchhccCCHHHHHHHHHh--hcccCcEEEEEecC
Q 021661 197 NLNPKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQ--VLKPGGLAIVSFSN 247 (309)
Q Consensus 197 ~~~~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~r--vLkpGG~lii~~~~ 247 (309)
...........+||+|++.--... ....+.+..+.. +|+++|+++++.+.
T Consensus 104 ~~~l~~~~~~~~fDlIFlDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~~ 155 (183)
T d2ifta1 104 LDFLKQPQNQPHFDVVFLDPPFHF-NLAEQAISLLCENNWLKPNALIYVETEK 155 (183)
T ss_dssp HHHTTSCCSSCCEEEEEECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred cccccccccCCcccEEEechhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence 100122233457999998643322 234567777754 79999999999765
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=7.4e-06 Score=68.42 Aligned_cols=89 Identities=9% Similarity=0.017 Sum_probs=67.4
Q ss_pred CCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhhCC--------CCCcEEEecCCCCCCCCCCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKRNP--------VLTEYVVQDLNLNPKLPFEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~a~--------~~i~~~~~D~~~~~~lp~~~~sfDlVis~~v 217 (309)
+.+|||+|+|.| ..++-.+|..+++.+|.+..-+...+ .+++.+...+ +++. .+.+||+|++-.
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~---E~~~-~~~~fD~V~sRA- 140 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRV---EEFP-SEPPFDGVISRA- 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCT---TTSC-CCSCEEEEECSC-
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccch---hhhc-cccccceehhhh-
Confidence 569999999977 33444578899999999976443221 2578888888 6664 345799999843
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEe
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~ 245 (309)
+..+..+++-+...+++||.+++--
T Consensus 141 ---~~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 141 ---FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp ---SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---hcCHHHHHHHHHHhcCCCcEEEEEC
Confidence 5578899999999999999877653
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.82 E-value=2e-05 Score=66.82 Aligned_cols=96 Identities=8% Similarity=-0.063 Sum_probs=61.5
Q ss_pred CCeEEEECCCcchhc-------cCCCCCCeEEEEeCCHHHHhhCC---CCCcEEEecCCCCCCCC-CCCCceeEEEeccc
Q 021661 149 GVSILDLCSSWVSHF-------PPGYKQDRIVGMGMNEEELKRNP---VLTEYVVQDLNLNPKLP-FEDNSFDVITNVVS 217 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~-------~~~~~~~~v~giD~S~~~l~~a~---~~i~~~~~D~~~~~~lp-~~~~sfDlVis~~v 217 (309)
+.+|||||++.|..+ ....+.++|+|+|+.+....... .+++++++|......+. +....+|+|+.-..
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~ 160 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 160 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence 569999999866322 12235789999999876544332 35899999973222221 34456888886543
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|..+....--++...|+|||+++++..
T Consensus 161 --H~~~~v~~~~~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 161 --HANTFNIMKWAVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp --CSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred --cchHHHHHHHHHhcccCcCCEEEEEcC
Confidence 333322221246789999999999865
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=6.5e-05 Score=61.11 Aligned_cols=97 Identities=18% Similarity=0.216 Sum_probs=64.9
Q ss_pred CCCCeEEEECCCcchhcc----CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC-----CCCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSWVSHFP----PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL-----PFEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~----~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l-----p~~~~sfDlVis~~v 217 (309)
.++.+||||||+.|.... .......|+++|+.+- .....+.++++|....... ....+.+|+|+|-.+
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~a 97 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---DPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA 97 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---cccCCceEeecccccchhhhhhhhhccCcceeEEEeccc
Confidence 458899999998775432 2345679999998762 1223478999998321000 123567999998765
Q ss_pred hhccCCH-----------HHHHHHHHhhcccCcEEEEEec
Q 021661 218 VDYLTKP-----------IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 218 l~~l~d~-----------~~~l~~i~rvLkpGG~lii~~~ 246 (309)
..-..+. ...+.-+.++||+||.+++-+-
T Consensus 98 p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 98 PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 4432221 3677778899999999988643
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.64 E-value=4.8e-06 Score=71.43 Aligned_cols=77 Identities=5% Similarity=0.031 Sum_probs=56.4
Q ss_pred HHHhhCCCCCCCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCC------CcEEEecCCCCCCCCCCCCce
Q 021661 137 YYSEVFPPSNTPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVL------TEYVVQDLNLNPKLPFEDNSF 209 (309)
Q Consensus 137 ~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~------i~~~~~D~~~~~~lp~~~~sf 209 (309)
.+.+.+.. .++.+|||||||+|...... ..+.+|+++|+++++++.++++ ++++.+|+ .+++++...+
T Consensus 20 kIv~~~~~--~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~---l~~~~~~~~~ 94 (245)
T d1yuba_ 20 QIIKQLNL--KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDI---LQFQFPNKQR 94 (245)
T ss_dssp HHHHHCCC--CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCC---TTTTCCCSSE
T ss_pred HHHHhcCC--CCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhh---hcccccccee
Confidence 33444432 45789999999999544222 2356999999999999887753 78889999 7777777777
Q ss_pred eEEEeccch
Q 021661 210 DVITNVVSV 218 (309)
Q Consensus 210 DlVis~~vl 218 (309)
+.|+++.-.
T Consensus 95 ~~vv~NLPY 103 (245)
T d1yuba_ 95 YKIVGNIPY 103 (245)
T ss_dssp EEEEEECCS
T ss_pred eeEeeeeeh
Confidence 878877543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.62 E-value=1.7e-05 Score=64.88 Aligned_cols=95 Identities=22% Similarity=0.267 Sum_probs=67.1
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCC-----CCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLP-----FEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp-----~~~~sfDlVis~~ 216 (309)
.++..++|..+|.|.+... ...+++|+|+|..+.+++.+++ ++.+++.+. .++. ...+.+|.|+...
T Consensus 17 ~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f---~~~~~~l~~~~~~~vdgIl~DL 93 (182)
T d1wg8a2 17 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNF---RHLKRHLAALGVERVDGILADL 93 (182)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCG---GGHHHHHHHTTCSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHH---HHHHHHHHHcCCCccCEEEEEc
Confidence 5689999999997744311 1136799999999999987765 477888877 3332 3346799999754
Q ss_pred chh--ccCC-------HHHHHHHHHhhcccCcEEEEE
Q 021661 217 SVD--YLTK-------PIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 217 vl~--~l~d-------~~~~l~~i~rvLkpGG~lii~ 244 (309)
.+. ++.+ ....|.....+|+|||.+++-
T Consensus 94 GvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii 130 (182)
T d1wg8a2 94 GVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVI 130 (182)
T ss_dssp SCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEE
Confidence 332 2222 356889999999999976544
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=7.4e-05 Score=65.45 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=60.0
Q ss_pred CCCCeEEEECCCcch---hcc-CCCCCCeEEEEeCCHHHHhhCCC--------CCcEEEecCCCCCCCCC---CCCceeE
Q 021661 147 TPGVSILDLCSSWVS---HFP-PGYKQDRIVGMGMNEEELKRNPV--------LTEYVVQDLNLNPKLPF---EDNSFDV 211 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~---~~~-~~~~~~~v~giD~S~~~l~~a~~--------~i~~~~~D~~~~~~lp~---~~~sfDl 211 (309)
.++.+|||+|+|.|. .+. .....+.|+++|+++.-++..++ ++.+...|. ..++. ..+.||.
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~---~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDF---LAVSPSDPRYHEVHY 169 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCG---GGSCTTCGGGTTEEE
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhh---hhhcccccccceeeE
Confidence 568999999998663 222 23456799999999887665443 366777777 44432 1256999
Q ss_pred EEec------cchhccCC------------------HHHHHHHHHhhcccCcEEEEEecC
Q 021661 212 ITNV------VSVDYLTK------------------PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 212 Vis~------~vl~~l~d------------------~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
|+.. .++...++ ..+.+..+. .|||||.|+-++..
T Consensus 170 VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS 228 (293)
T d2b9ea1 170 ILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS 228 (293)
T ss_dssp EEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred EeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence 9942 23222111 123444555 47999999888775
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.00012 Score=65.43 Aligned_cols=116 Identities=16% Similarity=0.206 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCeEEEECCCcchh-ccCCCCCCeEEEEeCCHHHHhhCCCC--------CcEEEecCCC
Q 021661 128 DPAIAALTKYYSEVFPPSNTPGVSILDLCSSWVSH-FPPGYKQDRIVGMGMNEEELKRNPVL--------TEYVVQDLNL 198 (309)
Q Consensus 128 ~~~~~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~-~~~~~~~~~v~giD~S~~~l~~a~~~--------i~~~~~D~~~ 198 (309)
......+.+.+.+.+.. .++.+|||+-||.|.. +..+....+|+|+|.++.+++.|+++ ++|+.+|...
T Consensus 194 ~~~~e~l~~~v~~~~~~--~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~ 271 (358)
T d1uwva2 194 AGVNQKMVARALEWLDV--QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEE 271 (358)
T ss_dssp HHHHHHHHHHHHHHHTC--CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTS
T ss_pred hhhhhHHHHHHHHhhcc--CCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhh
Confidence 34455566666666653 4578999999998854 33444567999999999999987653 7899999831
Q ss_pred C-CCCCCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecCcch
Q 021661 199 N-PKLPFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSNRCF 250 (309)
Q Consensus 199 ~-~~lp~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~~~~ 250 (309)
. ...+....++|+|+..--=.- ..++++.+.+. +|.-+++|+ .|+..
T Consensus 272 ~~~~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYVS-Cnp~T 319 (358)
T d1uwva2 272 DVTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYVS-CNPAT 319 (358)
T ss_dssp CCSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEEE-SCHHH
T ss_pred hhhhhhhhhccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEEe-CCHHH
Confidence 1 112234567999987421111 13466666654 666666776 34433
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.53 E-value=2.2e-05 Score=66.71 Aligned_cols=75 Identities=9% Similarity=-0.009 Sum_probs=51.5
Q ss_pred HHHHhhCCCCCCCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCC------CCcEEEecCCCCCCCCCCCCc
Q 021661 136 KYYSEVFPPSNTPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPV------LTEYVVQDLNLNPKLPFEDNS 208 (309)
Q Consensus 136 ~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~~~~~~lp~~~~s 208 (309)
+.+.+.+. ..++.+|||||||+|...... ..+.+|+++|+++.+++..++ +++++.+|+ .+++++...
T Consensus 11 ~~iv~~~~--~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~---l~~~~~~~~ 85 (235)
T d1qama_ 11 DKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDI---LQFKFPKNQ 85 (235)
T ss_dssp HHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCG---GGCCCCSSC
T ss_pred HHHHHhcC--CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhh---hhccccccc
Confidence 33444443 356899999999999644222 235689999999999886543 478999999 666655444
Q ss_pred eeEEEec
Q 021661 209 FDVITNV 215 (309)
Q Consensus 209 fDlVis~ 215 (309)
...|+++
T Consensus 86 ~~~vv~N 92 (235)
T d1qama_ 86 SYKIFGN 92 (235)
T ss_dssp CCEEEEE
T ss_pred cceeeee
Confidence 4455554
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.52 E-value=2.5e-05 Score=72.01 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=72.4
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhccCCC-------C---------CCeEEEEeCCHHHHhhCCC----------C
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY-------K---------QDRIVGMGMNEEELKRNPV----------L 188 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~-------~---------~~~v~giD~S~~~l~~a~~----------~ 188 (309)
.+++.+.+.+ .++.+|+|-+||+|.++..+. . ...+.|+|+++.+...|+. .
T Consensus 151 v~~mv~ll~~--~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~ 228 (425)
T d2okca1 151 IQAMVDCINP--QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDR 228 (425)
T ss_dssp HHHHHHHHCC--CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred hHhhheeccC--cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcccc
Confidence 4444455543 457899999999997653321 1 1359999999998877653 2
Q ss_pred CcEEEecCCCCCCCCCCCCceeEEEeccchhcc----------------CC-HHHHHHHHHhhcccCcEEEEEecCc
Q 021661 189 TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL----------------TK-PIEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 189 i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l----------------~d-~~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
......|. ... .+...||+|+++--+... .+ ...++..+.+.|||||.+++-+|+.
T Consensus 229 ~~i~~~d~---l~~-~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~ 301 (425)
T d2okca1 229 SPIVCEDS---LEK-EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN 301 (425)
T ss_dssp CSEEECCT---TTS-CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred ceeecCch---hhh-hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH
Confidence 45677776 222 245679999998433211 01 2369999999999999887777753
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.38 E-value=0.00011 Score=62.27 Aligned_cols=90 Identities=10% Similarity=0.029 Sum_probs=65.6
Q ss_pred CCCeEEEECCCcc---hhccCCCCCCeEEEEeCCHHHHhh---C-----CCCCcEEEecCCCCCCCCC---CCCceeEEE
Q 021661 148 PGVSILDLCSSWV---SHFPPGYKQDRIVGMGMNEEELKR---N-----PVLTEYVVQDLNLNPKLPF---EDNSFDVIT 213 (309)
Q Consensus 148 ~~~~ILDiGcG~g---~~~~~~~~~~~v~giD~S~~~l~~---a-----~~~i~~~~~D~~~~~~lp~---~~~sfDlVi 213 (309)
...+|+|||+|.| ..+.-..|..+++-+|.+..-... + -.++..+...+ +.+.. ..++||+|+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~---E~~~~~~~~~~~~D~v~ 146 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRA---ETFGQRKDVRESYDIVT 146 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCH---HHHTTCTTTTTCEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehh---hhccccccccccceEEE
Confidence 3679999999977 334445788999999999754332 2 12466777766 44431 235799999
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+- .+..+..+++-....+++||.+++-
T Consensus 147 sR----Ava~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 147 AR----AVARLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp EE----CCSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred Eh----hhhCHHHHHHHHhhhcccCCEEEEE
Confidence 95 4568889999999999999987764
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00016 Score=68.21 Aligned_cols=109 Identities=10% Similarity=0.118 Sum_probs=68.6
Q ss_pred HHHHHhhCCCCCCCCCeEEEECCCcchhccCCC-------C--------------CCeEEEEeCCHHHHhhCCCC-----
Q 021661 135 TKYYSEVFPPSNTPGVSILDLCSSWVSHFPPGY-------K--------------QDRIVGMGMNEEELKRNPVL----- 188 (309)
Q Consensus 135 ~~~~~~~l~~~~~~~~~ILDiGcG~g~~~~~~~-------~--------------~~~v~giD~S~~~l~~a~~~----- 188 (309)
.+++.+.+.+ .++.+|+|-+||+|.++..+. . ...++|+|+++.+...|+-+
T Consensus 153 v~~mv~ll~~--~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 153 IKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred hHhhhhcccC--ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 4444555543 457899999999997653211 0 12689999999988776532
Q ss_pred --------CcEEEecCCCCCCCC-CCCCceeEEEeccchh--cc-----------CC-HHHHHHHHHhhcccCcEEEEEe
Q 021661 189 --------TEYVVQDLNLNPKLP-FEDNSFDVITNVVSVD--YL-----------TK-PIEVFKEMCQVLKPGGLAIVSF 245 (309)
Q Consensus 189 --------i~~~~~D~~~~~~lp-~~~~sfDlVis~~vl~--~l-----------~d-~~~~l~~i~rvLkpGG~lii~~ 245 (309)
..+...|. ...+ .....||+|+++--+. .- .+ ...++..+.+.|||||.+.+-+
T Consensus 231 ~~~~i~~~~~~~~~~~---l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNT---LGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp CCCBGGGTBSEEESCT---TSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccchhhhhhh---hhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 12333332 1111 2345799999984221 11 11 2359999999999999888777
Q ss_pred cCc
Q 021661 246 SNR 248 (309)
Q Consensus 246 ~~~ 248 (309)
|+.
T Consensus 308 P~~ 310 (524)
T d2ar0a1 308 PDN 310 (524)
T ss_dssp EHH
T ss_pred ehH
Confidence 753
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.91 E-value=0.00025 Score=64.09 Aligned_cols=93 Identities=14% Similarity=0.048 Sum_probs=65.6
Q ss_pred CCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHhhCCCCC-----------------------cEEEecCCCCCCC
Q 021661 149 GVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELKRNPVLT-----------------------EYVVQDLNLNPKL 202 (309)
Q Consensus 149 ~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~~a~~~i-----------------------~~~~~D~~~~~~l 202 (309)
+.+|||..||+|... ....+..+|++.|+|+..++.+++|+ ...+.|+. ..+
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~--~~~ 123 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDAN--RLM 123 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHH--HHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhh--hhh
Confidence 679999999988432 22234568999999999999877641 23333431 011
Q ss_pred CCCCCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEEEEecC
Q 021661 203 PFEDNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
......||+|..-- ...+..+|..+.+.++.||+|.++...
T Consensus 124 ~~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTaTD 164 (375)
T d2dula1 124 AERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTATD 164 (375)
T ss_dssp HHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HhhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEecC
Confidence 12345699988743 557789999999999999999998654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=96.89 E-value=0.0044 Score=52.20 Aligned_cols=109 Identities=12% Similarity=-0.009 Sum_probs=62.4
Q ss_pred HHHHHHHHhhCCCCCCCCCeEEEECCCcchhc---cCCCCCCeEEEEeCCHHHHh--hCCC----C-CcEEEecCCCCCC
Q 021661 132 AALTKYYSEVFPPSNTPGVSILDLCSSWVSHF---PPGYKQDRIVGMGMNEEELK--RNPV----L-TEYVVQDLNLNPK 201 (309)
Q Consensus 132 ~~l~~~~~~~l~~~~~~~~~ILDiGcG~g~~~---~~~~~~~~v~giD~S~~~l~--~a~~----~-i~~~~~D~~~~~~ 201 (309)
.++.+...+.+ ..+..+|+|+|||.|... ....+...|.|+|+--...+ ...+ + +++...+. ...
T Consensus 53 ~Kl~~~~~~~~---~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~d--v~~ 127 (257)
T d2p41a1 53 AKLRWFVERNL---VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVD--VFF 127 (257)
T ss_dssp HHHHHHHHTTS---SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCC--TTT
T ss_pred HHHHHHHHhcC---ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhh--HHh
Confidence 34444444432 355789999999977432 33334457788887422100 0001 1 22222221 022
Q ss_pred CCCCCCceeEEEeccchhccCCH-------HHHHHHHHhhcccCcEEEEEecCc
Q 021661 202 LPFEDNSFDVITNVVSVDYLTKP-------IEVFKEMCQVLKPGGLAIVSFSNR 248 (309)
Q Consensus 202 lp~~~~sfDlVis~~vl~~l~d~-------~~~l~~i~rvLkpGG~lii~~~~~ 248 (309)
.+++..|+|+|-.+-. -.++ .++|+-+.+.|+|||.+++-+-.+
T Consensus 128 --l~~~~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 128 --IPPERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp --SCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred --cCCCcCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 3467799999986532 3332 267788889999999998886654
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0028 Score=54.59 Aligned_cols=65 Identities=14% Similarity=0.099 Sum_probs=45.9
Q ss_pred CCCCeEEEECCCcchhccC-CCCCCeEEEEeCCHHHHhhCCC---------CCcEEEecCCCCCCCCCCCCceeEEEecc
Q 021661 147 TPGVSILDLCSSWVSHFPP-GYKQDRIVGMGMNEEELKRNPV---------LTEYVVQDLNLNPKLPFEDNSFDVITNVV 216 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~-~~~~~~v~giD~S~~~l~~a~~---------~i~~~~~D~~~~~~lp~~~~sfDlVis~~ 216 (309)
.++..|||||+|.|..... ...+.+|+++++++.+++..++ +++++.+|+ ...+++ .++.|+++.
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~---l~~~~~--~~~~vV~NL 94 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV---LKTDLP--FFDTCVANL 94 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT---TTSCCC--CCSEEEEEC
T ss_pred CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHH---hhhhhh--hhhhhhcch
Confidence 4578999999998854322 2235699999999998876432 478899998 555443 356677663
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=95.97 E-value=0.0024 Score=54.24 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=38.0
Q ss_pred CCCCeEEEECCCcchhcc-CCCCCCeEEEEeCCHHHHhhCCC------CCcEEEecC
Q 021661 147 TPGVSILDLCSSWVSHFP-PGYKQDRIVGMGMNEEELKRNPV------LTEYVVQDL 196 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~-~~~~~~~v~giD~S~~~l~~a~~------~i~~~~~D~ 196 (309)
.++..|||||||.|.... ....+.+|+++|+++.+++..++ +++++.+|+
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~ 76 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDA 76 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCG
T ss_pred CCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhh
Confidence 458899999999885432 22345799999999999876543 378888888
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.93 E-value=0.0073 Score=48.96 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=63.6
Q ss_pred CCCCCeEEEECCCc-chh---ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC------CCCCceeEEEec
Q 021661 146 NTPGVSILDLCSSW-VSH---FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP------FEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiGcG~-g~~---~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp------~~~~sfDlVis~ 215 (309)
.+++.+||-+|||. |.. +.......+|+++|.+++-++.+++.---...+... +++. .....+|+++-.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-~~~~~~i~~~t~g~g~D~vid~ 101 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-TPLHEQIAALLGEPEVDCAVDA 101 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-SCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-cCHHHHHHHHhCCCCcEEEEEC
Confidence 46699999999984 422 233445569999999999999988763223333310 1110 123469999955
Q ss_pred cchhc---------cCCHHHHHHHHHhhcccCcEEEEE
Q 021661 216 VSVDY---------LTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 216 ~vl~~---------l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
....- .......++.+.++++|||.+++.
T Consensus 102 vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 102 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 33221 123457999999999999987654
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=95.30 E-value=0.014 Score=45.61 Aligned_cols=90 Identities=10% Similarity=0.007 Sum_probs=58.2
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-C-cEEEecCCCCCCCC--------CCCCceeEE
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-T-EYVVQDLNLNPKLP--------FEDNSFDVI 212 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i-~~~~~D~~~~~~lp--------~~~~sfDlV 212 (309)
.++.+||=+||| .|.. +.. ..+.+|+++|.+++-++.+++. . ..+..|... .+.. ...+.+|+|
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak-~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~-~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAK-AYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAK-EEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTT-SCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCEEEEEcccccchhhHhhHh-hhcccccccchHHHHHHHHHHcCCcEEEeccccc-cccchhhhhhhcccccCCcee
Confidence 558899999998 3422 222 3467999999999999988765 2 223333210 0100 113458988
Q ss_pred EeccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 213 TNVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 213 is~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
+-... -...++.+.++|+|+|.+++-
T Consensus 103 id~~g------~~~~~~~a~~~~~~~G~iv~~ 128 (170)
T d1e3ja2 103 IDCSG------NEKCITIGINITRTGGTLMLV 128 (170)
T ss_dssp EECSC------CHHHHHHHHHHSCTTCEEEEC
T ss_pred eecCC------ChHHHHHHHHHHhcCCceEEE
Confidence 86432 246788899999999977653
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.0015 Score=51.76 Aligned_cols=93 Identities=14% Similarity=-0.010 Sum_probs=56.4
Q ss_pred CCCCCeEEEECCC-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-C-cEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 146 NTPGVSILDLCSS-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-T-EYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-i-~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
..++.+||-+|+| .|.... ....+.+|+++|.|++-++.+++. . +++...- ..+......+.||+|+....-.+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~-~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLE-EGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGG-TSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccc-hHHHHHhhhcccceEEEEecCCc
Confidence 3568999999998 443221 112467999999999988888764 2 2332211 00111122456998886533221
Q ss_pred cCCHHHHHHHHHhhcccCcEEEE
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~lii 243 (309)
- ..+....++|+|+|.+++
T Consensus 104 ~----~~~~~~~~~l~~~G~iv~ 122 (168)
T d1piwa2 104 D----IDFNIMPKAMKVGGRIVS 122 (168)
T ss_dssp T----CCTTTGGGGEEEEEEEEE
T ss_pred c----chHHHHHHHhhccceEEE
Confidence 1 124567899999997755
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.19 E-value=0.013 Score=46.51 Aligned_cols=90 Identities=11% Similarity=0.112 Sum_probs=57.0
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC---------CCCCceeEEE
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP---------FEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp---------~~~~sfDlVi 213 (309)
.++.+||-+|+| .|.. +.......+|+++|.+++-++.+++.---...|... .+.. .....+|+|+
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~-~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE-TSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT-SCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc-cchHHHHHHHHHhhCCCCceEEe
Confidence 568999999998 3422 233332238999999999999887752112223311 1110 1234599988
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
-...- ...++...+.|+|||.+++
T Consensus 106 d~vG~------~~~~~~a~~~l~~~G~iv~ 129 (182)
T d1vj0a2 106 EATGD------SRALLEGSELLRRGGFYSV 129 (182)
T ss_dssp ECSSC------TTHHHHHHHHEEEEEEEEE
T ss_pred ecCCc------hhHHHHHHHHhcCCCEEEE
Confidence 55322 2467888999999998754
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=94.76 E-value=0.051 Score=48.06 Aligned_cols=44 Identities=20% Similarity=0.352 Sum_probs=34.5
Q ss_pred CCCCCceeEEEeccchhccCC---------------------------------HHHHHHHHHhhcccCcEEEEEec
Q 021661 203 PFEDNSFDVITNVVSVDYLTK---------------------------------PIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 203 p~~~~sfDlVis~~vl~~l~d---------------------------------~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
-+|+++.|+++|+.++||+.. ...+|+.=.+-|+|||.+++.+.
T Consensus 134 LfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 134 LFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp CSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred cCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 378899999999999999742 12466666778899998888753
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.035 Score=43.35 Aligned_cols=90 Identities=11% Similarity=0.064 Sum_probs=58.4
Q ss_pred CCCCeEEEECCCc-ch---hccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC--------CCCCceeEEE
Q 021661 147 TPGVSILDLCSSW-VS---HFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP--------FEDNSFDVIT 213 (309)
Q Consensus 147 ~~~~~ILDiGcG~-g~---~~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp--------~~~~sfDlVi 213 (309)
.++.+||=+|||. |. .+.......+|+++|.+++-++.+++. .+.....-. ++.. .....+|+|+
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~--~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISK--ESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSS--CCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccc--cccccccccccccCCCCceEEE
Confidence 5688999999983 32 223333334899999999999988875 332222210 1110 0124689988
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
-...- ...++.+.+.+++||.+++-
T Consensus 103 d~~G~------~~~~~~a~~~~~~gG~iv~~ 127 (171)
T d1pl8a2 103 ECTGA------EASIQAGIYATRSGGTLVLV 127 (171)
T ss_dssp ECSCC------HHHHHHHHHHSCTTCEEEEC
T ss_pred eccCC------chhHHHHHHHhcCCCEEEEE
Confidence 75432 46789999999999977653
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.43 E-value=0.015 Score=45.91 Aligned_cols=89 Identities=16% Similarity=0.106 Sum_probs=58.8
Q ss_pred CCCCCeEEEECCC-cch---hccCCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCC-----CCCCCceeEEEe
Q 021661 146 NTPGVSILDLCSS-WVS---HFPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKL-----PFEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~l-----p~~~~sfDlVis 214 (309)
..++.+||=+||| .|. .+........|+++|.+++-++.+++. .+++..+- ++. .+.++.||+|+-
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~---~~~~~~i~~~t~gg~D~vid 102 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKT---QDPVAAIKEITDGGVNFALE 102 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTT---SCHHHHHHHHTTSCEEEEEE
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCC---cCHHHHHHHHcCCCCcEEEE
Confidence 3668999999998 332 223334455788999999988888764 23332222 221 123457999886
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+.. -...++...++++|+|.+++
T Consensus 103 ~~G------~~~~~~~~~~~~~~~G~i~~ 125 (174)
T d1f8fa2 103 STG------SPEILKQGVDALGILGKIAV 125 (174)
T ss_dssp CSC------CHHHHHHHHHTEEEEEEEEE
T ss_pred cCC------cHHHHHHHHhcccCceEEEE
Confidence 532 23677889999999997765
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.36 E-value=0.023 Score=44.93 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=56.9
Q ss_pred CCCCCeEEEECCC-cch---hccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC------CCCCceeEEEec
Q 021661 146 NTPGVSILDLCSS-WVS---HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP------FEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp------~~~~sfDlVis~ 215 (309)
..++.+||=+||| .|. .+.+.....+|+++|.+++-++.+++.--....|... ++.. .....+|+|+-+
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~-~~~~~~v~~~t~g~G~D~vid~ 103 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKN-GHIEDQVMKLTNGKGVDRVIMA 103 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGG-SCHHHHHHHHTTTSCEEEEEEC
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccc-hhHHHHHHHHhhccCcceEEEc
Confidence 3568899999998 342 2233333347999999999888887641111222210 1111 123459998865
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
..- ...+++..+.|+|+|.+++
T Consensus 104 ~g~------~~~~~~a~~~~~~~G~iv~ 125 (174)
T d1jqba2 104 GGG------SETLSQAVKMVKPGGIISN 125 (174)
T ss_dssp SSC------TTHHHHHHHHEEEEEEEEE
T ss_pred cCC------HHHHHHHHHHHhcCCEEEE
Confidence 432 2567888899999997765
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.76 E-value=0.058 Score=42.07 Aligned_cols=90 Identities=16% Similarity=0.101 Sum_probs=57.7
Q ss_pred CCCCeEEEECCCc-chh---ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC-----CCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSW-VSH---FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP-----FEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~-g~~---~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp-----~~~~sfDlVis~~v 217 (309)
.++.+||=+|+|. |.. +........|+++|.+++-++.+++..--...|... +... ...+.+|+|+-...
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~-~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARR-DPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTS-CHHHHHHHHTTTCCEEEEEESSC
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcc-cHHHHHHHhhCCCCceEEEEecC
Confidence 4588999999983 322 233344568999999999888887652112223310 1111 12345999886543
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
- ...++...+.|++||.+++
T Consensus 110 ~------~~~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 110 S------QATVDYTPYLLGRMGRLII 129 (172)
T ss_dssp C------HHHHHHGGGGEEEEEEEEE
T ss_pred c------chHHHHHHHHHhCCCEEEE
Confidence 2 3568889999999998765
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.26 E-value=0.085 Score=41.42 Aligned_cols=93 Identities=15% Similarity=0.077 Sum_probs=58.7
Q ss_pred CCCCCeEEEECCC-cch---hccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC------CCCCCceeEEEec
Q 021661 146 NTPGVSILDLCSS-WVS---HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL------PFEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l------p~~~~sfDlVis~ 215 (309)
..++.+||=+||| .|. .+........|+.+|.+++-++.+++.---...|....++. ....+.+|+|+-+
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 4668999999998 342 23334444589999999998888887521111222100111 0123568998765
Q ss_pred cchhccCCHHHHHHHHHhhcccC-cEEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPG-GLAIVS 244 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpG-G~lii~ 244 (309)
.. -...+.+..+.|+|| |.+++-
T Consensus 106 ~G------~~~~~~~a~~~~~~g~G~~v~v 129 (174)
T d1e3ia2 106 AG------TAQTLKAAVDCTVLGWGSCTVV 129 (174)
T ss_dssp SC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred cc------cchHHHHHHHHhhcCCeEEEec
Confidence 42 346789999999997 877553
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.15 E-value=0.051 Score=42.04 Aligned_cols=86 Identities=13% Similarity=0.130 Sum_probs=53.7
Q ss_pred CCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCCC-----CCCCceeEEEec
Q 021661 147 TPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLP-----FEDNSFDVITNV 215 (309)
Q Consensus 147 ~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~lp-----~~~~sfDlVis~ 215 (309)
+++.+||=+|+| .|.. +.+. .+.+|+++|.+++-++.+++. .+++ |... ++.. ...+.+|.|++.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~-~G~~Vi~~~~~~~~~~~a~~~Ga~~~i--~~~~-~~~~~~~~~~~~g~~~~i~~~ 101 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARA-MGLHVAAIDIDDAKLELARKLGASLTV--NARQ-EDPVEAIQRDIGGAHGVLVTA 101 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHTTCSEEE--ETTT-SCHHHHHHHHHSSEEEEEECC
T ss_pred CCCCEEEEeeccccHHHHHHHHHH-cCCccceecchhhHHHhhhccCccccc--cccc-hhHHHHHHHhhcCCccccccc
Confidence 558899999998 3322 2222 358999999999999888765 2232 3310 1110 112334455443
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
.. ...++...+.|+|||.+++
T Consensus 102 ~~-------~~~~~~~~~~l~~~G~iv~ 122 (166)
T d1llua2 102 VS-------NSAFGQAIGMARRGGTIAL 122 (166)
T ss_dssp SC-------HHHHHHHHTTEEEEEEEEE
T ss_pred cc-------chHHHHHHHHhcCCcEEEE
Confidence 32 3568889999999997765
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.09 E-value=0.12 Score=40.22 Aligned_cols=89 Identities=18% Similarity=0.078 Sum_probs=57.6
Q ss_pred CCCCCeEEEECC-C-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC------CCCCCceeEEEe
Q 021661 146 NTPGVSILDLCS-S-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL------PFEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGc-G-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l------p~~~~sfDlVis 214 (309)
..++.+||-.|+ | .|.... ....+.+|++++-|++-++.+++. .+. ..|... .++ ....+.+|+|+.
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~-vi~~~~-~~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHE-VFNHRE-VNYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE-EEETTS-TTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCccc-cccccc-ccHHHHhhhhhccCCceEEee
Confidence 356899999997 4 443221 122467999999999888877765 222 234411 111 023456999997
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+.. ...+++..++|+|+|.++.
T Consensus 104 ~~g-------~~~~~~~~~~l~~~G~iv~ 125 (174)
T d1yb5a2 104 MLA-------NVNLSKDLSLLSHGGRVIV 125 (174)
T ss_dssp SCH-------HHHHHHHHHHEEEEEEEEE
T ss_pred ccc-------HHHHHHHHhccCCCCEEEE
Confidence 642 2468888999999997765
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.66 E-value=0.055 Score=41.98 Aligned_cols=91 Identities=13% Similarity=0.214 Sum_probs=57.6
Q ss_pred CCCCCeEEEECC-C-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC------CCCCceeEEE
Q 021661 146 NTPGVSILDLCS-S-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVIT 213 (309)
Q Consensus 146 ~~~~~~ILDiGc-G-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp------~~~~sfDlVi 213 (309)
..++.+||=+|| | .|.. +.......+|+++|.+++-++.+++. .+. ..|... ++.. ...+.||+|+
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~-~i~~~~-~~~~~~~~~~~~~~~~d~vi 102 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADY-VINASM-QDPLAEIRRITESKGVDAVI 102 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSE-EEETTT-SCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCce-eeccCC-cCHHHHHHHHhhcccchhhh
Confidence 356899999997 4 3322 23334456999999999888887764 222 222210 1110 1235699998
Q ss_pred eccchhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 214 NVVSVDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 214 s~~vl~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
-... -...++.+.+.|+|||.+++-
T Consensus 103 d~~g------~~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 103 DLNN------SEKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp ESCC------CHHHHTTGGGGEEEEEEEEEC
T ss_pred cccc------cchHHHhhhhhcccCCEEEEe
Confidence 7543 245667789999999977553
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.16 E-value=0.18 Score=38.78 Aligned_cols=88 Identities=18% Similarity=0.199 Sum_probs=55.7
Q ss_pred eEEEECCC-cchhc----cCCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCCCCCCCceeEEEeccchhccCC
Q 021661 151 SILDLCSS-WVSHF----PPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTK 223 (309)
Q Consensus 151 ~ILDiGcG-~g~~~----~~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d 223 (309)
+|+=|||| .|..+ .......+|+|+|.+++.++.+++. +.....+. .. ..+...|+|+.+.-.+ .
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~dlIila~p~~---~ 74 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI---AK--VEDFSPDFVMLSSPVR---T 74 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCG---GG--GGGTCCSEEEECSCHH---H
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhh---hh--hhccccccccccCCch---h
Confidence 57889999 34332 2233456899999999999988764 22333332 11 1233579998765433 3
Q ss_pred HHHHHHHHHhhcccCcEEEEEecC
Q 021661 224 PIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 224 ~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
...+++++...++++- +++++..
T Consensus 75 ~~~vl~~l~~~~~~~~-ii~d~~s 97 (171)
T d2g5ca2 75 FREIAKKLSYILSEDA-TVTDQGS 97 (171)
T ss_dssp HHHHHHHHHHHSCTTC-EEEECCS
T ss_pred hhhhhhhhhccccccc-ccccccc
Confidence 4678889999998764 4455443
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=90.72 E-value=0.036 Score=46.53 Aligned_cols=71 Identities=10% Similarity=-0.126 Sum_probs=47.9
Q ss_pred CCeEEEECCCcch-hccCCCCCCeEEEEeCCHHHHh-------hCC----------CCCcEEEecCCCCCCCCCCCCcee
Q 021661 149 GVSILDLCSSWVS-HFPPGYKQDRIVGMGMNEEELK-------RNP----------VLTEYVVQDLNLNPKLPFEDNSFD 210 (309)
Q Consensus 149 ~~~ILDiGcG~g~-~~~~~~~~~~v~giD~S~~~l~-------~a~----------~~i~~~~~D~~~~~~lp~~~~sfD 210 (309)
..+|||.-||.|. .+..+..+++|+++|-++.+.. .+. ++++++.+|.. +-+.-..++||
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~--~~L~~~~~~~D 166 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL--TALTDITPRPQ 166 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH--HHSTTCSSCCS
T ss_pred CCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHH--HHHhccCCCCC
Confidence 4589999999883 3333334789999999986432 111 13789999962 22333356799
Q ss_pred EEEeccchhcc
Q 021661 211 VITNVVSVDYL 221 (309)
Q Consensus 211 lVis~~vl~~l 221 (309)
+|+.--++.+-
T Consensus 167 vIYlDPMFp~~ 177 (250)
T d2oyra1 167 VVYLDPMFPHK 177 (250)
T ss_dssp EEEECCCCCCC
T ss_pred EEEECCCCccc
Confidence 99988777654
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.39 E-value=0.22 Score=38.87 Aligned_cols=92 Identities=13% Similarity=0.146 Sum_probs=53.1
Q ss_pred CCCCCeEEEECCC-cch---hccCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCC-C-----CCCCceeEEEe
Q 021661 146 NTPGVSILDLCSS-WVS---HFPPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKL-P-----FEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~l-p-----~~~~sfDlVis 214 (309)
.+++.+||=+||| .|. .........+|+++|.+++-++.|++. .+... |....+.. . ...+.+|+|+-
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~i-n~~~~~~~~~~~~~~~~g~G~d~vi~ 105 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECI-SPKDSTKPISEVLSEMTGNNVGYTFE 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEE-CGGGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEE-CccccchHHHHHHHHhccccceEEEE
Confidence 3568999999998 332 223344456999999999999998875 22221 22100111 0 12346888776
Q ss_pred ccchhccCCHHHHHHHHHh-hcccCcEEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQ-VLKPGGLAIVS 244 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~r-vLkpGG~lii~ 244 (309)
... .+ ..+.+... +++++|.+++-
T Consensus 106 ~~g-----~~-~~~~~a~~~~~~~~G~~v~v 130 (176)
T d1d1ta2 106 VIG-----HL-ETMIDALASCHMNYGTSVVV 130 (176)
T ss_dssp CSC-----CH-HHHHHHHTTSCTTTCEEEEC
T ss_pred eCC-----ch-HHHHHHHHHhhcCCeEEEEE
Confidence 532 22 34444444 44555866553
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.20 E-value=0.057 Score=45.02 Aligned_cols=54 Identities=26% Similarity=0.259 Sum_probs=35.4
Q ss_pred EEEecCCCCCCC-CCCCCceeEEEecc----ch-------hccCCHHHHHHHHHhhcccCcEEEEEec
Q 021661 191 YVVQDLNLNPKL-PFEDNSFDVITNVV----SV-------DYLTKPIEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 191 ~~~~D~~~~~~l-p~~~~sfDlVis~~----vl-------~~l~d~~~~l~~i~rvLkpGG~lii~~~ 246 (309)
|+++|.- +-| .++++++|+|+..- .. +++......+.++.|+|||||.+++...
T Consensus 7 ~~~~D~l--e~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 7 YDVCDCL--DTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp EEECCHH--HHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEechHH--HHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 5566651 111 25689999999752 11 1222346789999999999998877543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=88.78 E-value=0.23 Score=37.99 Aligned_cols=86 Identities=10% Similarity=0.137 Sum_probs=54.3
Q ss_pred CeEEEECCC-cchhcc--CCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCCCCCCCceeEEEeccchhccCCH
Q 021661 150 VSILDLCSS-WVSHFP--PGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYLTKP 224 (309)
Q Consensus 150 ~~ILDiGcG-~g~~~~--~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l~d~ 224 (309)
++|.=||+| .|..+. ....+.+|++.|.+++.++.+++. +.....+. +.+ ...|+|+..--. ...
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~---~~~----~~~DiIilavp~---~~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDL---SLL----QTAKIIFLCTPI---QLI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCG---GGG----TTCSEEEECSCH---HHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeec---ccc----cccccccccCcH---hhh
Confidence 467778999 443332 223467999999999988877654 33333333 222 347888865432 234
Q ss_pred HHHHHHHHhhcccCcEEEEEec
Q 021661 225 IEVFKEMCQVLKPGGLAIVSFS 246 (309)
Q Consensus 225 ~~~l~~i~rvLkpGG~lii~~~ 246 (309)
+++++++...|+++-++ +++.
T Consensus 71 ~~vl~~l~~~l~~~~iv-~~~~ 91 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIV-TDVA 91 (165)
T ss_dssp HHHHHHHGGGSCTTCEE-EECC
T ss_pred hhhhhhhhhhcccccce-eecc
Confidence 67888888888877655 4443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=88.46 E-value=0.35 Score=37.58 Aligned_cols=92 Identities=16% Similarity=0.120 Sum_probs=54.6
Q ss_pred CCCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC------CCCCCceeEEEec
Q 021661 146 NTPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL------PFEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l------p~~~~sfDlVis~ 215 (309)
.+++.+||=+||| .|.. +..+....+|+++|.+++-++.+++.---...|....+.. ....+.+|+|+-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 4678999999998 3322 2333445689999999999998887621112222110111 0123468888754
Q ss_pred cchhccCCHHHHHHHHHhhccc-CcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKP-GGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkp-GG~lii 243 (309)
.. ....+.+....+++ +|.+++
T Consensus 105 ~g------~~~~~~~~~~~~~~~~G~~v~ 127 (174)
T d1p0fa2 105 AG------RIETMMNALQSTYCGSGVTVV 127 (174)
T ss_dssp SC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred CC------CchHHHHHHHHHHHhcCceEE
Confidence 32 23566666666655 586654
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.86 E-value=0.28 Score=37.38 Aligned_cols=89 Identities=15% Similarity=0.168 Sum_probs=55.2
Q ss_pred CCCCeEEEECCCc-chhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC-----CCCCceeEEEeccc
Q 021661 147 TPGVSILDLCSSW-VSHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP-----FEDNSFDVITNVVS 217 (309)
Q Consensus 147 ~~~~~ILDiGcG~-g~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp-----~~~~sfDlVis~~v 217 (309)
.++.+||=.|+|. |... .....+.+|+++|.+++-++.+++. .+.+....+ ++.. ...+.+|+|++..
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~- 102 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLK--EDAAKFMKEKVGGVHAAVVTAV- 102 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTT--SCHHHHHHHHHSSEEEEEESSC-
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceeccccc--chhhhhcccccCCCceEEeecC-
Confidence 5688999999983 3221 1123467999999999999888775 333322221 1110 1233344444322
Q ss_pred hhccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 218 VDYLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 218 l~~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
-...+....+.|+|||.+++-
T Consensus 103 ------~~~~~~~a~~~l~~~G~i~~~ 123 (168)
T d1rjwa2 103 ------SKPAFQSAYNSIRRGGACVLV 123 (168)
T ss_dssp ------CHHHHHHHHHHEEEEEEEEEC
T ss_pred ------CHHHHHHHHHHhccCCceEec
Confidence 246789999999999987663
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=87.83 E-value=1.3 Score=37.37 Aligned_cols=96 Identities=17% Similarity=0.089 Sum_probs=62.4
Q ss_pred CCeEEEECCCcch-hcc-CCCCCCeEEEEeCCHHHHhhCC-----------CCCcEEEecCCCCCCCC-------CCCCc
Q 021661 149 GVSILDLCSSWVS-HFP-PGYKQDRIVGMGMNEEELKRNP-----------VLTEYVVQDLNLNPKLP-------FEDNS 208 (309)
Q Consensus 149 ~~~ILDiGcG~g~-~~~-~~~~~~~v~giD~S~~~l~~a~-----------~~i~~~~~D~~~~~~lp-------~~~~s 208 (309)
...|+.+|||.-. .+. ...++.+++=+|. +++++.-+ .+...+..|+. ..++ +..+.
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~--~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLR--QDWPPALRSAGFDPSA 166 (297)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTT--SCHHHHHHHTTCCTTS
T ss_pred CCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEeccccc--chHHHHHHhcCCCCCC
Confidence 3467779999442 222 2245668899996 66654211 12466777773 2221 22233
Q ss_pred eeEEEeccchhccC--CHHHHHHHHHhhcccCcEEEEEecC
Q 021661 209 FDVITNVVSVDYLT--KPIEVFKEMCQVLKPGGLAIVSFSN 247 (309)
Q Consensus 209 fDlVis~~vl~~l~--d~~~~l~~i~rvLkpGG~lii~~~~ 247 (309)
-=++++-.++.+++ +..++|+.+.....||..++++..+
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~ 207 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 207 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 44667777899986 4578999999999999999998654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=87.67 E-value=0.056 Score=42.00 Aligned_cols=92 Identities=16% Similarity=0.173 Sum_probs=55.7
Q ss_pred CCCCCeEEEECCC-cchh---ccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCCCCCCceeEEEeccchhcc
Q 021661 146 NTPGVSILDLCSS-WVSH---FPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDYL 221 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~~---~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~l 221 (309)
..++.+||=+|+| .|.. +.+. .+.+++++|.+++-++.+++.---...|...........+.+|+|+-...-.
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~-~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~-- 104 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHA-MGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAP-- 104 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSC--
T ss_pred CCCCCEEEEeccchHHHHHHHHhhc-ccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecc--
Confidence 3568999999998 3422 2222 3678889999998887776541111223310000112235699988654321
Q ss_pred CCHHHHHHHHHhhcccCcEEEEE
Q 021661 222 TKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 222 ~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
..++...++|+|+|.+++-
T Consensus 105 ----~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 105 ----HNLDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp ----CCHHHHHTTEEEEEEEEEC
T ss_pred ----hhHHHHHHHHhcCCEEEEe
Confidence 3466778999999977653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=87.62 E-value=0.021 Score=45.03 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=61.3
Q ss_pred CCCeEEEECCCcc-hhc--cCCCCCCeEEEEeCCHHHHhhCCC----CCcEEEecCCCCCCCCCCCCceeEEEeccchhc
Q 021661 148 PGVSILDLCSSWV-SHF--PPGYKQDRIVGMGMNEEELKRNPV----LTEYVVQDLNLNPKLPFEDNSFDVITNVVSVDY 220 (309)
Q Consensus 148 ~~~~ILDiGcG~g-~~~--~~~~~~~~v~giD~S~~~l~~a~~----~i~~~~~D~~~~~~lp~~~~sfDlVis~~vl~~ 220 (309)
++.+|+=||+|.. ... ....-+++|+.+|.+++.+++.+. +++....+- +.+.-.-...|+||..-.+--
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~---~~l~~~~~~aDivI~aalipG 107 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVAEADLLIGAVLVPG 107 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHHTCSEEEECCCCTT
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhh---hhHHHhhccCcEEEEeeecCC
Confidence 4789999999933 221 222347899999999998876543 255554443 233211235799998876555
Q ss_pred cCCHHHHHHHHHhhcccCcEEE
Q 021661 221 LTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 221 l~d~~~~l~~i~rvLkpGG~li 242 (309)
-.-|.-+=+++.+.+|||..++
T Consensus 108 ~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 108 RRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp SSCCCCBCHHHHTTSCTTCEEE
T ss_pred cccCeeecHHHHhhcCCCcEEE
Confidence 4556667788999999987654
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.90 E-value=0.38 Score=41.40 Aligned_cols=49 Identities=12% Similarity=-0.033 Sum_probs=35.3
Q ss_pred CCCeEEEECCCcchhccCC---CCCCeEEEEeCCHHHHhhCC-----CCCcEEEecC
Q 021661 148 PGVSILDLCSSWVSHFPPG---YKQDRIVGMGMNEEELKRNP-----VLTEYVVQDL 196 (309)
Q Consensus 148 ~~~~ILDiGcG~g~~~~~~---~~~~~v~giD~S~~~l~~a~-----~~i~~~~~D~ 196 (309)
++..|||||.|.|...... ....+|+++|+++...+..+ .++.++.+|+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~ 99 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDP 99 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCT
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCch
Confidence 4679999999988653222 12348999999998876533 3477888887
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=83.35 E-value=0.38 Score=37.07 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=57.1
Q ss_pred CCCCCeEEEECCCc--chhcc--CCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCCC------CCCCceeEEEec
Q 021661 146 NTPGVSILDLCSSW--VSHFP--PGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKLP------FEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiGcG~--g~~~~--~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~lp------~~~~sfDlVis~ 215 (309)
.+++.+||=.|+|. |.... ....+.+|+++|.|++-++.+++.---...|... +++. .....+|+|+..
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~-~d~~~~v~~~t~g~g~d~v~d~ 104 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYRE-EDLVERLKEITGGKKVRVVYDS 104 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTT-SCHHHHHHHHTTTCCEEEEEEC
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCC-CCHHHHHHHHhCCCCeEEEEeC
Confidence 35689999997753 33221 1234789999999999888776642112334421 1211 134579998875
Q ss_pred cchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
..- +.+......|+|+|.+++
T Consensus 105 ~g~-------~~~~~~~~~l~~~G~~v~ 125 (179)
T d1qora2 105 VGR-------DTWERSLDCLQRRGLMVS 125 (179)
T ss_dssp SCG-------GGHHHHHHTEEEEEEEEE
T ss_pred ccH-------HHHHHHHHHHhcCCeeee
Confidence 532 246788999999997655
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=82.99 E-value=0.21 Score=42.00 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=32.8
Q ss_pred CCCCeEEEECCCcchhccCC-CCCCeEEEEeCCHHHHhhCCCC
Q 021661 147 TPGVSILDLCSSWVSHFPPG-YKQDRIVGMGMNEEELKRNPVL 188 (309)
Q Consensus 147 ~~~~~ILDiGcG~g~~~~~~-~~~~~v~giD~S~~~l~~a~~~ 188 (309)
.++..|||.=||+|+....+ .-+.+.+|+|++++.++.++++
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~R 291 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFR 291 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGG
T ss_pred cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHH
Confidence 45899999988877654333 2367999999999999988754
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=81.79 E-value=0.98 Score=34.56 Aligned_cols=93 Identities=11% Similarity=0.073 Sum_probs=57.2
Q ss_pred CCCCCeEEEECCCcc-h---hccCCCCCCeEEEEeCCHHHHhhCCCCCcEEEecCCCCCCC------CCCCCceeEEEec
Q 021661 146 NTPGVSILDLCSSWV-S---HFPPGYKQDRIVGMGMNEEELKRNPVLTEYVVQDLNLNPKL------PFEDNSFDVITNV 215 (309)
Q Consensus 146 ~~~~~~ILDiGcG~g-~---~~~~~~~~~~v~giD~S~~~l~~a~~~i~~~~~D~~~~~~l------p~~~~sfDlVis~ 215 (309)
.+++.+||=+|+|.+ . .........+|+++|.+++-++.+++.--....+....++. ....+.+|+|+-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 466899999999733 2 22334456799999999998888877521112222100111 0233569998876
Q ss_pred cchhccCCHHHHHHHHHhhcccCc-EEEEE
Q 021661 216 VSVDYLTKPIEVFKEMCQVLKPGG-LAIVS 244 (309)
Q Consensus 216 ~vl~~l~d~~~~l~~i~rvLkpGG-~lii~ 244 (309)
.... ..++.....+++|| .+++.
T Consensus 106 ~G~~------~~~~~a~~~~~~~~g~~~~~ 129 (176)
T d2jhfa2 106 IGRL------DTMVTALSCCQEAYGVSVIV 129 (176)
T ss_dssp SCCH------HHHHHHHHHBCTTTCEEEEC
T ss_pred CCch------hHHHHHHHHHhcCCcceEEe
Confidence 5433 55677788888875 55544
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=81.11 E-value=0.18 Score=40.04 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=57.0
Q ss_pred CCCeEEEECCCcc-hhc--cCCCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCC----------CCCC--CC------
Q 021661 148 PGVSILDLCSSWV-SHF--PPGYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLN----------PKLP--FE------ 205 (309)
Q Consensus 148 ~~~~ILDiGcG~g-~~~--~~~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~----------~~lp--~~------ 205 (309)
++.+||=||+|.. ... ....-+++|+.+|.+++.+++.+.. -.|+..+.... ..+. +.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~ 107 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA 107 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence 4679999999944 221 1223478999999999887766543 12221111000 0000 00
Q ss_pred ----CCceeEEEeccchhccCCHHHHHHHHHhhcccCcEEE
Q 021661 206 ----DNSFDVITNVVSVDYLTKPIEVFKEMCQVLKPGGLAI 242 (309)
Q Consensus 206 ----~~sfDlVis~~vl~~l~d~~~~l~~i~rvLkpGG~li 242 (309)
-..-|+||..-.+---.-|.-+=+++.+.+|||..++
T Consensus 108 l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 108 VLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 0247999988766655556667788999999987654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.90 E-value=0.95 Score=34.71 Aligned_cols=89 Identities=22% Similarity=0.222 Sum_probs=56.6
Q ss_pred CCCCCeEEEECC-C-cchhccC--CCCCCeEEEEeCCHHHHhhCCCC-CcEEEecCCCCCCCC------CCCCceeEEEe
Q 021661 146 NTPGVSILDLCS-S-WVSHFPP--GYKQDRIVGMGMNEEELKRNPVL-TEYVVQDLNLNPKLP------FEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGc-G-~g~~~~~--~~~~~~v~giD~S~~~l~~a~~~-i~~~~~D~~~~~~lp------~~~~sfDlVis 214 (309)
..++.+||=.|+ | .|..... ...+.++++++-+++-.+.+++. .+. ..|... +++. .....||+|+.
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~-vi~~~~-~~~~~~v~~~t~~~g~d~v~d 100 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEY-VGDSRS-VDFADEILELTDGYGVDVVLN 100 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSE-EEETTC-STHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccc-cccCCc-cCHHHHHHHHhCCCCEEEEEe
Confidence 356889999874 5 4432211 22467999998888877877765 232 233311 1211 13457999997
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
+.. .+.++++.++|+++|.++.
T Consensus 101 ~~g-------~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 101 SLA-------GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp CCC-------THHHHHHHHTEEEEEEEEE
T ss_pred ccc-------chHHHHHHHHhcCCCEEEE
Confidence 654 2467788899999998765
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=80.54 E-value=0.36 Score=39.16 Aligned_cols=52 Identities=13% Similarity=0.112 Sum_probs=33.2
Q ss_pred cEEEecCCCCCC-C-CCCCCceeEEEeccch-------h-------ccCCHHHHHHHHHhhcccCcEEEEE
Q 021661 190 EYVVQDLNLNPK-L-PFEDNSFDVITNVVSV-------D-------YLTKPIEVFKEMCQVLKPGGLAIVS 244 (309)
Q Consensus 190 ~~~~~D~~~~~~-l-p~~~~sfDlVis~~vl-------~-------~l~d~~~~l~~i~rvLkpGG~lii~ 244 (309)
.++.+|. .+ | .++++++|+|+..-=. . ++......++++.|+|||||.+++.
T Consensus 6 ~i~~gDc---le~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 6 KIHQMNC---FDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp SEEECCH---HHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccH---HHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 4666775 22 2 2567889999975211 0 1112346889999999999977643
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=80.20 E-value=0.95 Score=34.48 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=56.8
Q ss_pred CCCCCeEEEECCC-cch---hccCCCCCCeEEEEeCCHHHHhhCCCC--CcEEEecCCCCCCC-----CCCCCceeEEEe
Q 021661 146 NTPGVSILDLCSS-WVS---HFPPGYKQDRIVGMGMNEEELKRNPVL--TEYVVQDLNLNPKL-----PFEDNSFDVITN 214 (309)
Q Consensus 146 ~~~~~~ILDiGcG-~g~---~~~~~~~~~~v~giD~S~~~l~~a~~~--i~~~~~D~~~~~~l-----p~~~~sfDlVis 214 (309)
.+++.+||=.||| .|. .+........|+++|.+++-++.+++. .+++..+-. .+.. ....+.+|+|+-
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~-~~~~~~~~~~~~~~g~D~vid 104 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDF-SKPIQEVLIEMTDGGVDYSFE 104 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGC-SSCHHHHHHHHTTSCBSEEEE
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCch-hhHHHHHHHHHcCCCCcEeee
Confidence 4668999999997 332 223334456899999999988887764 222222110 0010 012356999987
Q ss_pred ccchhccCCHHHHHHHHHhhcccCcEEEE
Q 021661 215 VVSVDYLTKPIEVFKEMCQVLKPGGLAIV 243 (309)
Q Consensus 215 ~~vl~~l~d~~~~l~~i~rvLkpGG~lii 243 (309)
... ....++.+..++++||.+++
T Consensus 105 ~~G------~~~~~~~~~~~~~~g~~~~~ 127 (176)
T d2fzwa2 105 CIG------NVKVMRAALEACHKGWGVSV 127 (176)
T ss_dssp CSC------CHHHHHHHHHTBCTTTCEEE
T ss_pred cCC------CHHHHHHHHHhhcCCceeEE
Confidence 543 23678889999999986544
|