Citrus Sinensis ID: 021667

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MSTGTAEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDEDDYYEFSDYDFGYDFDYDYLFND
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHccccHHHHHHHHcHHcHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEEccccccHHHHHHHHHHccccccEEcccccccccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHccccccEEEcccccccccHHHHHHHHHccccccccccccccccccccHHHHHcccccccccccccccEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHEEEEccccHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccccEEEEccccccccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHccccccEEEccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccc
Coil and Loop (DISEMBL)
mstgtaeqescdwtqlpaDVTSTILSKIGAIDVLTSAQRVCSSWlrichdpamwrnidmhnlgdlwdmdhdLEKMCRHAvdrsngqlLSINIEYFGTDELLQYIANRSRNLRNLRLvscynisdqgfceaikgfpllEELELSYCSLSQEALEAVGSlcpllrsfklnnrghrcpkiecdDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDacphlesldlrqcfnvNLVGKLGKICAERIrdlrhpndsthdyefgadfqdfcwssvedypsgisdielvsdeddyyefsdydfgydfdydylfnd
Flexible Loop (DISEMBL)
mstgtaeqescdwtqlpADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDEDDYYEFSDYDFGYDFDYDYLFND
Low Complexity Region (SEG)
MSTGTAEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAnrsrnlrnlrlVSCYNISDQGFCEAIKGFPlleelelsycslsQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVsdeddyyefsdydfgydfdydyLFND
Disordered region (IsUnstruct)
**********CDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDEDDYYEFSDYDFGYDFDYDYLF**
Disordered Region (DISOPRED)
****************PADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDEDDYYEFSDYDFGYDFDYDYLFND
Disordered Region (DISEMBL)
***********DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDEDDYYEFSDYDFGYDFDYDYLFND
Disordered Region (DISPRO)
**********CDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDEDDYYEFSDYDFGYDFDYDYLFND
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTGTAEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDEDDYYEFSDYDFGYDFDYDYLFND
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q9M0U9	302	F-box protein SKIP19 OS=A	yes	no	0.915	0.937	0.565	3e-86
Q9S9V9	449	Putative F-box/LRR-repeat	no	no	0.757	0.521	0.563	9e-74
Q9M0U7	309	Putative F-box protein At	no	no	0.805	0.805	0.477	8e-64
Q9M0U8	304	Putative F-box/LRR-repeat	no	no	0.799	0.812	0.460	8e-59
Q9S9V8	246	Putative F-box/LRR-repeat	no	no	0.718	0.902	0.489	8e-56
Q9M0U6	307	Putative F-box/LRR-repeat	no	no	0.805	0.811	0.498	4e-53
Q9ZPE4	317	F-box protein FBW2 OS=Ara	no	no	0.763	0.744	0.293	8e-23
Q9FDX1	300	F-box protein SKIP1 OS=Ar	no	no	0.718	0.74	0.306	5e-22
Q9M096	301	Putative F-box/LRR-repeat	no	no	0.705	0.724	0.270	6e-15
Q9M2Z5	309	F-box/LRR-repeat protein	no	no	0.692	0.692	0.216	3e-09

>sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1

 Score =  318 bits (816), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 168/297 (56%), Positives = 210/297 (70%), Gaps = 14/297 (4%)

Query: 9   ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDM 68
           ES +WT+LP ++TS IL ++GAI++L +AQ+VC SW R+C DP+MWR IDMHNLGDL DM
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74

Query: 69  DHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFC 128
           D++LE MCRHAVDRS G L+ I I YFGT +LL YIA+RS NLR+LRL+ C  I+D GF 
Sbjct: 75  DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134

Query: 129 EAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188
           EA+   P LEELELSYCS S E+L  VG  C  +++ KLN      P+ E DDDA AIAE
Sbjct: 135 EAVVKLP-LEELELSYCSFSVESLRVVGQCCLNMKTLKLNKH----PQKENDDDALAIAE 189

Query: 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRH 248
            M  LRHLQL GN L++ GL AILD C +LE LDLR+CFNVNLVG L K C E ++ +RH
Sbjct: 190 TMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVVRH 249

Query: 249 PNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDEDDYYEFSDYDFGYDF-DYD 304
           PNDS HD + G        SS ++ P   SDI+L+S +DD+  + D+    DF DYD
Sbjct: 250 PNDSIHDIDIG--------SSEDEDPYDFSDIDLMSGDDDFEGYYDFSGASDFSDYD 298

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=4 SV=1

 Score =  277 bits (708), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 137/243 (56%), Positives = 176/243 (72%), Gaps = 9/243 (3%)

Query: 12  DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHD 71
           +W +LP+ +TS+IL ++GAI++L +AQ+VC  W R+C DP+MWR ID+ N  D     +D
Sbjct: 180 NWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRAAFKYD 239

Query: 72  LEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAI 131
           LE MCRHAVDRS+G L+ I I Y+GT++L+ YIA+RS NL++L LV C+ I+D+G  +A+
Sbjct: 240 LESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEGVAKAV 299

Query: 132 KGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKI-----ECDDDAKAI 186
              PLLE LE+SYC  S E+L  +G  CP L++ KLN    R P+I       DD+AKAI
Sbjct: 300 SKVPLLEYLEVSYCLFSGESLRDIGRSCPNLKTLKLN----RAPEIMFSNSGFDDNAKAI 355

Query: 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDL 246
           AE+M  LRHLQL GN LTN GL AILD CPHLE LDLRQCFN+NLVG L K C ERI+DL
Sbjct: 356 AESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLKKRCFERIKDL 415

Query: 247 RHP 249
           R P
Sbjct: 416 RCP 418

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U7|FB221_ARATH Putative F-box protein At4g05475 OS=Arabidopsis thaliana GN=At4g05475 PE=4 SV=2

 Score =  244 bits (622), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 126/264 (47%), Positives = 173/264 (65%), Gaps = 15/264 (5%)

Query: 7   EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLW 66
           ++E  +W  LP ++T++IL ++   D+L +A+++C +W RIC DP+MWR I   NL D  
Sbjct: 34  DEERINWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKI---NLRDCL 90

Query: 67  DMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQG 126
             + D E MCRH VD S G LL INIE+F +D LL YI +RS NL++L +     ++++G
Sbjct: 91  MYEFDFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKG 150

Query: 127 FCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHR----------CPK 176
               I+  PLLE L + + S+  + L+A+G  CP L++ KLN+ G             P 
Sbjct: 151 VMNGIEKLPLLETLVIFHSSIKLD-LKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPL 209

Query: 177 IECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLES-LDLRQCFNVNLVGKL 235
           +ECDDDA AIAE+M  LRHLQL GN LTN GL AILD CPHLE  LD+R+CFN+NLVG L
Sbjct: 210 LECDDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINLVGNL 269

Query: 236 GKICAERIRDLRHPNDSTHDYEFG 259
            K C +RI++LR P+DST DY + 
Sbjct: 270 EKRCMKRIKELRRPHDSTADYPYS 293

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U8|FBL21_ARATH Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=4 SV=1

 Score =  227 bits (579), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 124/269 (46%), Positives = 164/269 (60%), Gaps = 22/269 (8%)

Query: 8   QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWD 67
           +E  +W  LP ++T++IL ++   D+L +AQ+VC  W RIC DP+MWR I   N  D   
Sbjct: 41  KERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKI---NTRDCLM 97

Query: 68  MDHDLEKMCRHAVDRSNGQLLSINI-EYFGTDELLQYIANRSRNLRNLRLVSCY-NISDQ 125
            + D   MCRH VD S G LL IN+ E+F +D LL YI +R  NLR+L L  C+  ++  
Sbjct: 98  YNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDR--NLRSLGLGMCFPRVTKL 155

Query: 126 GFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCP---------- 175
           G   AI   PLLE LE+++  +  + L+A+G  CP L++ KLN+ G   P          
Sbjct: 156 GVVNAIAKIPLLETLEVTHSCIKLD-LKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVL 214

Query: 176 ----KIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL 231
                +ECDDDA AIAE+M  L HLQL  N LTN GL AILD CPHLE LD+R+CF ++L
Sbjct: 215 DDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISL 274

Query: 232 VGKLGKICAERIRDLRHPNDSTHDYEFGA 260
           VG L K C E I++LR P DST DY +  
Sbjct: 275 VGNLEKRCLEMIKELRRPGDSTADYPYNG 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V8|FBL9_ARATH Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1

 Score =  217 bits (553), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 113/231 (48%), Positives = 153/231 (66%), Gaps = 9/231 (3%)

Query: 12  DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMH---NLGDLWDM 68
           +W +LP ++TS+IL ++GAI++L +AQRVC SW R+C DP+MWR ID+    NL +  ++
Sbjct: 20  NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79

Query: 69  DHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFC 128
            + +E +C  AVD S G LL INI+Y      L YIA+RS NLR L +V C  +  +G  
Sbjct: 80  FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVV 139

Query: 129 EAIKGFPLLEELELSY-CSLSQEALEAVGSLCPLLRSFKLNNRGH-RCPKIECDDDAKAI 186
           EA    PLLEEL+++Y  S+ ++ L+ VG  CP LR+ KLN  G  +C    CD  A AI
Sbjct: 140 EAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKC----CDKVALAI 195

Query: 187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGK 237
           AE M GLRHLQLF N L+  GL AIL+ CPHL++L L QC N+N+VG + K
Sbjct: 196 AETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U6|FBL22_ARATH Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=4 SV=1

 Score =  208 bits (529), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/255 (49%), Positives = 163/255 (63%), Gaps = 6/255 (2%)

Query: 6   AEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDL 65
            E++  +W +LP D+ S+IL ++  +++L +A++VC SW R+  DP +WR IDM NL  L
Sbjct: 20  GEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRL 79

Query: 66  WDMDHDLEKMCRHAVDRSNGQLLSINIEY--FGTDELLQYIANRSRNLRNLRLVSCYNIS 123
           + + + +E  CRH VD S G LL  NI+   F T  LL Y+A RS NLR LR V    I+
Sbjct: 80  YCI-YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLR-VKGGQIT 137

Query: 124 DQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDA 183
             G  EAI   PLLEELEL YCS+ +E  + +G  CP L++ KL   G      E D+DA
Sbjct: 138 SVGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKL--VGFWSHLNESDNDA 195

Query: 184 KAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERI 243
            AIA+ M GL HLQL  N LTN+GL AILD CPHLE LDLRQCFN+NL G L + C ERI
Sbjct: 196 LAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQCLERI 255

Query: 244 RDLRHPNDSTHDYEF 258
           +D R PND   DY +
Sbjct: 256 KDFRCPNDVLDDYNY 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPE4|FBW2_ARATH F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1

 Score =  107 bits (268), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 118/245 (48%), Gaps = 9/245 (3%)

Query: 8   QESCD---WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGD 64
           +E C+   W +L  D    I S +   +VLT   RVC +W R    P  W+ ID+    +
Sbjct: 2   EEDCEFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSN 61

Query: 65  LWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISD 124
            +     L++M    + RS G L  +++     D +  +IA  + +L+ L+ V    +++
Sbjct: 62  RFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLK-VPRSGLTN 120

Query: 125 QGFCEAIKGFPLLEELELSY-CSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIEC-DDD 182
            G     +    L  L+LSY C +  EA++A+G  C  LR F  N        +   DD+
Sbjct: 121 SGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDE 180

Query: 183 AKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242
           A AIA  M  L+ L++  + ++  G+  IL  C  LE L+LR C++V L  K  K   E+
Sbjct: 181 AYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFK---EK 237

Query: 243 IRDLR 247
             D++
Sbjct: 238 FPDMK 242

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX1|SKIP1_ARATH F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1

 Score =  105 bits (262), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/248 (30%), Positives = 122/248 (49%), Gaps = 26/248 (10%)

Query: 7   EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGD-- 64
           E++  DW  L  ++   I+S++   ++ T    V  SWL +C DP +W   D+    D  
Sbjct: 2   EEDGSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSY 61

Query: 65  -----LW--DMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLV 117
                LW  + +  ++ M R  VD S G L  I + +  +D  L Y A+R  NL+ L + 
Sbjct: 62  PESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIR 120

Query: 118 SCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLN----NRGH 172
           S  N++D    +       L+EL++SYC  +S + L  +G  CP LR  K N    +  H
Sbjct: 121 SSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRH 180

Query: 173 ----------RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLD 222
                      CP+ + D +A AI ++M  L HL++  + L+  GL +I + CP LE LD
Sbjct: 181 IGSVPTEYLDACPQ-DGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLD 239

Query: 223 LRQCFNVN 230
           L  C +++
Sbjct: 240 LFGCVHLS 247

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M096|FBL19_ARATH Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana GN=FBL19 PE=4 SV=1

 Score = 81.6 bits (200), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 107/244 (43%), Gaps = 26/244 (10%)

Query: 12  DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAM-------WRNIDMHNLGD 64
           DW++L  +    I S++           V  +W+  C+DP +        R +      +
Sbjct: 19  DWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLSFPESIN 78

Query: 65  LW--DMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNI 122
            W  + +  ++   R  VDRS G L  I I +  T+  L Y A R  NL  L + +C N+
Sbjct: 79  WWTPEFEDKVDSFLRSVVDRSEGGLTEIRIRHC-TERSLSYAAERCPNLEVLWIKNCPNV 137

Query: 123 SDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLN---NRGHRCPKIE 178
           +D    +     P L EL++SY   ++ E+L  +G  C  L+  K N     G   P I 
Sbjct: 138 TDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLPTIV 197

Query: 179 CDDD------------AKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQC 226
              D            A+ I + M  L+HL++  + LT  GL ++   C +LE +DLR C
Sbjct: 198 APLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDLRGC 257

Query: 227 FNVN 230
            ++ 
Sbjct: 258 ISLT 261

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2Z5|FBL53_ARATH F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana GN=At3g48880 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 91/236 (38%), Gaps = 22/236 (9%)

Query: 13  WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLW------ 66
           W +L  D+   I  K    ++ +    VC  W   C DP +W+ +D+ N+   +      
Sbjct: 13  WEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLSNMRSSFIKIPLE 72

Query: 67  -------DMDHDLEKMCRHAVDRSNG--QLLSINIEYFGTDELLQYIANRSRNLRNLRLV 117
                    D  L ++ + +++ S G  + L  +   F +D+ L Y A R   LR + L 
Sbjct: 73  PYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTAERCPGLRRVVLP 132

Query: 118 SCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKI 177
           +   I   G C+AI+ +  LE L +   +     L  +   C   +  K+          
Sbjct: 133 AWNRIKKTGICKAIRIWKDLESLTMPSIANPPYLLTEIAKNCKNFKELKIMGPFEVF--- 189

Query: 178 ECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVG 233
                A  +   +  ++ L +  + +    L  ILD  P LE L++     V   G
Sbjct: 190 ----FANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNISHSHLVEYSG 241

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
225443980	321	PREDICTED: F-box protein SKIP19 [Vitis v	0.932	0.897	0.639	8e-97
255571310	305	ubiquitin-protein ligase, putative [Rici	0.880	0.891	0.597	6e-91
297813917	308	F-box family protein [Arabidopsis lyrata	0.883	0.886	0.576	2e-87
356546510	311	PREDICTED: F-box protein SKIP19-like [Gl	0.948	0.942	0.562	7e-86
18412947	302	F-box protein SKIP19 [Arabidopsis thalia	0.915	0.937	0.565	2e-84
21593361	302	F-box protein family, AtFBL20 [Arabidops	0.915	0.937	0.562	6e-84
297813919	610	hypothetical protein ARALYDRAFT_911810 [	0.844	0.427	0.569	2e-81
356555512	318	PREDICTED: F-box protein SKIP19-like [Gl	0.912	0.886	0.553	1e-79
449433680	311	PREDICTED: F-box protein SKIP19-like [Cu	0.841	0.836	0.568	6e-79
297790738	296	hypothetical protein ARALYDRAFT_332995 [	0.802	0.837	0.544	4e-75

>gi|225443980|ref|XP_002274093.1| PREDICTED: F-box protein SKIP19 [Vitis vinifera] gi|147853333|emb|CAN82327.1| hypothetical protein VITISV_041807 [Vitis vinifera] gi|297740788|emb|CBI30970.3| unnamed protein product [Vitis vinifera]

 Score =  359 bits (922), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 188/294 (63%), Positives = 228/294 (77%), Gaps = 6/294 (2%)

Query: 12  DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHD 71
           +W +LP DVTS ILSK+ A+++L+SAQ VCS W ++C +P MWRNIDMHNLGDL D+ +D
Sbjct: 19  NWQELPRDVTSMILSKLNAVEILSSAQFVCSFWRKLCREPMMWRNIDMHNLGDLCDLGYD 78

Query: 72  LEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAI 131
           LE+M RHAVDRS GQLLSI I+ F TD LL YI +RS ++R+LRLVSCY ISD G  E I
Sbjct: 79  LEEMARHAVDRSGGQLLSICIDDFATDNLLNYIIDRSSHIRHLRLVSCYGISDDGLSEGI 138

Query: 132 KGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMH 191
           K  PLL E++L YCS S+E LEA+G  CP L+SF+LN +G R P IECD++A AIA+NM 
Sbjct: 139 KRLPLLVEIDLCYCSFSKEVLEAIGQCCPRLKSFRLNCQGFRHPHIECDEEALAIAQNMP 198

Query: 192 GLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPND 251
           GL+ LQLFGN+LTN GL AILD C HLESLDLRQCFNVNL G L K CAE+I+ LR+PND
Sbjct: 199 GLKSLQLFGNKLTNNGLLAILDGCCHLESLDLRQCFNVNLGGNLAKRCAEQIKILRYPND 258

Query: 252 STHDYEFGADFQDFCWSSVEDYPSGISDIELVSDEDDYYEFSDYDFGYDF-DYD 304
           ST DYEF A+  D   S  E+YPSGISD++L+SD  DYY+FSD   G DF +YD
Sbjct: 259 STDDYEFDAEIHDDA-SFDEEYPSGISDLDLLSD-GDYYDFSD---GSDFSEYD 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571310|ref|XP_002526604.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223534044|gb|EEF35763.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  340 bits (871), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 163/273 (59%), Positives = 209/273 (76%), Gaps = 1/273 (0%)

Query: 12  DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHD 71
           +W +LP DVT+ IL K+GA D+L SAQ VCSSW  +C DP+MWR++++H L D WD+  D
Sbjct: 18  NWAELPRDVTALILDKVGAFDILGSAQFVCSSWNSVCKDPSMWRSVEIHPLCDFWDLPFD 77

Query: 72  LEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAI 131
           LE +CR+AVDRS G L+SI+IEYF TD L++YIA+RS +L+ LRL+S Y +SD  F +A 
Sbjct: 78  LEALCRNAVDRSRGGLISISIEYFATDSLIKYIADRSSHLKRLRLLSSYTLSDAAFSKAA 137

Query: 132 KGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMH 191
           K FPLLEEL++SYCSLS EAL  VG  CPLLRS KLN +G++ P IE +++A AI + M 
Sbjct: 138 KKFPLLEELDISYCSLSTEALVGVGISCPLLRSLKLNCQGYKRPHIESNEEALAIGQWMP 197

Query: 192 GLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPND 251
            LR+LQ+FGN+LTN G+QAILD CPHLE LDLRQCFNV+L G+LG +C ERI+DLR P+D
Sbjct: 198 HLRYLQIFGNKLTNDGVQAILDGCPHLEFLDLRQCFNVHLEGELGMLCGERIKDLRRPDD 257

Query: 252 STHDYEFGADFQDFCWSSVEDYPSGISDIELVS 284
            T DY F  +  D+  SS EDYPSG SD+E  +
Sbjct: 258 PTDDYPFNPEIPDYG-SSEEDYPSGFSDMEFAT 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813917|ref|XP_002874842.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297320679|gb|EFH51101.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/288 (57%), Positives = 213/288 (73%), Gaps = 15/288 (5%)

Query: 9   ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDM 68
           ES +WT+LP ++TS IL ++GAI++L +AQ+VC SW R+C DP+MWR IDMHNLGDL DM
Sbjct: 14  ESRNWTELPPELTSLILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLEDM 73

Query: 69  DHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFC 128
           + +L+ MCRHAVDRS G L+ I+I YFGTD LL YIA+RS NLR+LRL  C  I+D G  
Sbjct: 74  EFNLDIMCRHAVDRSQGGLVEIDIWYFGTDGLLNYIADRSSNLRSLRLTRCSQITDDGLV 133

Query: 129 EAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188
           EA+   PLLE+LELSYCSLS  +L+ +G  CP ++  KL +     P+ E DDDA AIAE
Sbjct: 134 EAVLKLPLLEDLELSYCSLSGVSLKVLGQSCPNMKILKLKSY----PQKENDDDALAIAE 189

Query: 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRH 248
            M  LRHLQLFGN L++ GL AILD+C +LE LDLR+CFNVNL+G L K C+ER++ +RH
Sbjct: 190 TMPKLRHLQLFGNGLSDTGLNAILDSCLNLEHLDLRRCFNVNLIGDLQKRCSERVKVVRH 249

Query: 249 PNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDE---DDYYEFS 293
           PNDSTHD + G        SS ++YP G SDI+L+SD+   DDYY+ +
Sbjct: 250 PNDSTHDIDIG--------SSEDEYPYGFSDIDLMSDDTEFDDYYDLT 289

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546510|ref|XP_003541669.1| PREDICTED: F-box protein SKIP19-like [Glycine max]

 Score =  323 bits (827), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 170/302 (56%), Positives = 211/302 (69%), Gaps = 9/302 (2%)

Query: 2   STGTAEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHN 61
           S+  A  E  +W  LP DV  TI  K+GA ++LT AQ VCS W  I  +P +WR IDM N
Sbjct: 3   SSKEAAAEERNWLDLPRDVLCTIFQKLGATEILTRAQGVCSVWRAISKEPLLWRTIDMRN 62

Query: 62  LGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYN 121
           LGD+  +D  L  MC  A+D S+G LL IN+EYFGTD+LL +I + + NLR+LRL  CY 
Sbjct: 63  LGDI-GLDFHLLAMCHRAIDYSSGHLLHINVEYFGTDDLLHHITHSTSNLRSLRLACCYQ 121

Query: 122 ISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDD 181
           ISD+G CE  +  P LEEL++S  +L+++ LEA+G  CP L++ K N  G+R P IECD+
Sbjct: 122 ISDEGLCEIAEKLPQLEELDISISNLTKDPLEAIGQCCPHLKTLKFNMEGYRRPHIECDE 181

Query: 182 DAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAE 241
           +A AIAE M GL HLQLFGN+LTN GL AILD CP LESLDLRQCFNVNL G LGK CAE
Sbjct: 182 EAFAIAETMPGLHHLQLFGNKLTNEGLLAILDGCPLLESLDLRQCFNVNLAGSLGKRCAE 241

Query: 242 RIRDLRHPNDSTHDYEFGADFQDFCWSSV-EDYPSGISDIELVSDED-DYYEFSDYDFGY 299
           +I++LR P D T DY F A+     + S+ EDYPSGISDI+ +SD+D DYYEFS    G 
Sbjct: 242 QIKELRLPCDPTDDYPFEAEID---YGSLDEDYPSGISDIDFLSDDDYDYYEFSG---GS 295

Query: 300 DF 301
           DF
Sbjct: 296 DF 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18412947|ref|NP_567294.1| F-box protein SKIP19 [Arabidopsis thaliana] gi|75335768|sp|Q9M0U9.1|SKI19_ARATH RecName: Full=F-box protein SKIP19; AltName: Full=F-box/LRR-repeat protein 20; AltName: Full=SKP1-interacting partner 19 gi|7267306|emb|CAB81088.1| N7 like-protein [Arabidopsis thaliana] gi|27765050|gb|AAO23646.1| At4g05460 [Arabidopsis thaliana] gi|110742947|dbj|BAE99368.1| N7 like-protein [Arabidopsis thaliana] gi|332657123|gb|AEE82523.1| F-box protein SKIP19 [Arabidopsis thaliana]

 Score =  318 bits (816), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 168/297 (56%), Positives = 210/297 (70%), Gaps = 14/297 (4%)

Query: 9   ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDM 68
           ES +WT+LP ++TS IL ++GAI++L +AQ+VC SW R+C DP+MWR IDMHNLGDL DM
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74

Query: 69  DHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFC 128
           D++LE MCRHAVDRS G L+ I I YFGT +LL YIA+RS NLR+LRL+ C  I+D GF 
Sbjct: 75  DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134

Query: 129 EAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188
           EA+   P LEELELSYCS S E+L  VG  C  +++ KLN      P+ E DDDA AIAE
Sbjct: 135 EAVVKLP-LEELELSYCSFSVESLRVVGQCCLNMKTLKLNKH----PQKENDDDALAIAE 189

Query: 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRH 248
            M  LRHLQL GN L++ GL AILD C +LE LDLR+CFNVNLVG L K C E ++ +RH
Sbjct: 190 TMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVVRH 249

Query: 249 PNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDEDDYYEFSDYDFGYDF-DYD 304
           PNDS HD + G        SS ++ P   SDI+L+S +DD+  + D+    DF DYD
Sbjct: 250 PNDSIHDIDIG--------SSEDEDPYDFSDIDLMSGDDDFEGYYDFSGASDFSDYD 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593361|gb|AAM65310.1| F-box protein family, AtFBL20 [Arabidopsis thaliana]

 Score =  317 bits (811), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 167/297 (56%), Positives = 210/297 (70%), Gaps = 14/297 (4%)

Query: 9   ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDM 68
           ES +WT+LP ++TS IL ++GAI++L +AQ+VC SW R+C DP+MWR IDMHNLGDL DM
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74

Query: 69  DHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFC 128
           D++LE MCRHAVDRS G L+ I I YFGT +LL YIA+RS NLR+LRL+ C  I+D GF 
Sbjct: 75  DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134

Query: 129 EAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188
           EA+   P LEELELSYCS S E+L  VG  C  +++ KLN      P+ E DDDA AIAE
Sbjct: 135 EAVVKLP-LEELELSYCSFSVESLRVVGQCCLNMKTLKLNKH----PQKENDDDALAIAE 189

Query: 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRH 248
            +  LRHLQL GN L++ GL AILD C +LE LDLR+CFNVNLVG L K C E ++ +RH
Sbjct: 190 TIPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVVRH 249

Query: 249 PNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDEDDYYEFSDYDFGYDF-DYD 304
           PNDS HD + G        SS ++ P   SDI+L+S +DD+  + D+    DF DYD
Sbjct: 250 PNDSIHDIDIG--------SSEDEDPYDFSDIDLMSGDDDFEGYYDFSGASDFSDYD 298

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813919|ref|XP_002874843.1| hypothetical protein ARALYDRAFT_911810 [Arabidopsis lyrata subsp. lyrata] gi|297320680|gb|EFH51102.1| hypothetical protein ARALYDRAFT_911810 [Arabidopsis lyrata subsp. lyrata]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 156/274 (56%), Positives = 195/274 (71%), Gaps = 13/274 (4%)

Query: 5   TAEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGD 64
             ++E  +W +LP ++TS+IL ++G ID+L +AQ+VC SW R+C DP+MWR IDM NLGD
Sbjct: 339 VKDEEVRNWAELPPELTSSILGRLGTIDILENAQKVCRSWRRVCKDPSMWRKIDMDNLGD 398

Query: 65  LWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISD 124
           L  M +DLE MCRHAVDRS G L+ I+I YFGTDELL YIA+RS NLR LRL+ CY I+D
Sbjct: 399 LGAMGYDLEIMCRHAVDRSQGGLVEIDIWYFGTDELLNYIADRSSNLRTLRLIMCYPIAD 458

Query: 125 QGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECD---- 180
           +GF EA+   PL+E LELS+CSLS E+L+ VG  CP L++ KLN+     PK   D    
Sbjct: 459 EGFIEAVVKLPLIEYLELSHCSLSGESLKVVGQSCPNLKTLKLNSEPD--PKFNDDEFNN 516

Query: 181 DDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICA 240
           ++A AIAE+M  LRHLQLFGN LTNVGL AILD CPHLE LDLR+C NV+L G L K C 
Sbjct: 517 EEALAIAESMPELRHLQLFGNILTNVGLNAILDGCPHLEHLDLRKCSNVDLTGDLEKRCV 576

Query: 241 ERIRDLRHPNDSTHDYEFGA-------DFQDFCW 267
           ERI+DL+ P DST  + +G        D  D+ W
Sbjct: 577 ERIKDLKRPTDSTAGHPYGRITVDVRYDASDYYW 610

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555512|ref|XP_003546075.1| PREDICTED: F-box protein SKIP19-like [Glycine max]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 160/289 (55%), Positives = 201/289 (69%), Gaps = 7/289 (2%)

Query: 8   QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWD 67
           +E  +W  LP DV  TI  K+GAI++LT AQRVCS W  I  +P +WR IDM N GD+ +
Sbjct: 15  EEERNWLDLPRDVVCTIFQKLGAIEILTRAQRVCSVWRGISKEPLLWRTIDMRNSGDI-E 73

Query: 68  MDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGF 127
            +     MC  A+D S+G LL INIEYF TD+LL++I + + NLR+LRL  CY ISD+G 
Sbjct: 74  TNFVFLAMCHRAIDYSSGHLLHINIEYFATDDLLRHITHSTSNLRSLRLACCYQISDEGL 133

Query: 128 CEAIKGFPLLEELELSYCSL--SQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA 185
           CE  K  P LEEL++S  S   +++ LEAVG  C  L++ K N +G+R P IECD++A A
Sbjct: 134 CEIAKELPQLEELDISISSFNPTRDPLEAVGRCCRHLKTLKFNMKGYRRPHIECDEEAFA 193

Query: 186 IAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRD 245
           IAE M  L HLQLFGN+LTN GL AILD CPHLESLDLRQCFNVNL G LGK CAE+I++
Sbjct: 194 IAETMPTLHHLQLFGNKLTNEGLLAILDGCPHLESLDLRQCFNVNLAGSLGKRCAEQIKE 253

Query: 246 LRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDED-DYYEFS 293
           LR P D T D  F AD     + S+++  S ISDI+ +SD+D DYYEFS
Sbjct: 254 LRLPCDPTDDCPFEADVD---YGSLDEDSSAISDIDFLSDDDYDYYEFS 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433680|ref|XP_004134625.1| PREDICTED: F-box protein SKIP19-like [Cucumis sativus] gi|449490588|ref|XP_004158648.1| PREDICTED: F-box protein SKIP19-like [Cucumis sativus]

 Score =  300 bits (768), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 149/262 (56%), Positives = 184/262 (70%), Gaps = 2/262 (0%)

Query: 1   MSTGTAEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMH 60
           +S  + E ES +W +LP DVTS IL K+G +++LT AQ VCSSW +IC DP MWR IDM 
Sbjct: 5   LSPNSVEGESRNWLELPVDVTSMILQKLGPVEILTYAQYVCSSWRKICEDPLMWRVIDMR 64

Query: 61  NLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCY 120
              D WDMD++LE++CR AV RS GQL+  NIE+FGTD+LL YI      L  LRLV C 
Sbjct: 65  YPCDWWDMDYNLEELCRQAVKRSCGQLIHFNIEHFGTDDLLLYITQSCNQLSRLRLVYCN 124

Query: 121 NISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECD 180
            ISD+G  EA+   PLLE+LELS+CS   E LE +G  CP L+S KLN + +R  ++ECD
Sbjct: 125 RISDEGLVEAVSKLPLLEDLELSFCSFDVETLETLGQNCPGLKSLKLNRQFYR--RVECD 182

Query: 181 DDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICA 240
             A AIAENM  LRHL +FGN LTN GL+AILD C  LESLDLR CFN+NL G+LG  C+
Sbjct: 183 KGALAIAENMPNLRHLHIFGNNLTNKGLEAILDGCSALESLDLRHCFNLNLAGQLGAKCS 242

Query: 241 ERIRDLRHPNDSTHDYEFGADF 262
           E+I+DLR P+D T D EF  + 
Sbjct: 243 EKIKDLRLPHDPTDDCEFTTEI 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790738|ref|XP_002863254.1| hypothetical protein ARALYDRAFT_332995 [Arabidopsis lyrata subsp. lyrata] gi|297309088|gb|EFH39513.1| hypothetical protein ARALYDRAFT_332995 [Arabidopsis lyrata subsp. lyrata]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 140/257 (54%), Positives = 187/257 (72%), Gaps = 9/257 (3%)

Query: 7   EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLW 66
           ++E  +W +LP+++T +IL+++GAID+L +AQ+VC+SW R+  DP MWR IDMH LGD+ 
Sbjct: 12  DEEPRNWAELPSELTFSILNRLGAIDILENAQKVCTSWRRVSLDPLMWRKIDMHYLGDMG 71

Query: 67  DMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQG 126
            M +D E MCRHAVDRS G L+ I+I +FGTD+LL YIA+RS NLR+LRL  C  I+D+G
Sbjct: 72  SMIYDFESMCRHAVDRSQGGLVEIDIWHFGTDDLLNYIADRSSNLRSLRLAMCNQITDEG 131

Query: 127 FCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIEC-----DD 181
             EA+   PLLE+L++S+C+   E+L  VG  CP L++ KLN    R P I+C     + 
Sbjct: 132 VTEAVVKLPLLEDLDVSFCAFLGESLRVVGQSCPNLKTLKLN----RSPGIDCFLFRPNI 187

Query: 182 DAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAE 241
           +A  IAE+M  LRH+QLFGNE+ N GL AILD CPH+E LDLR+CFN+NLV  + K C+E
Sbjct: 188 NAIVIAESMPNLRHIQLFGNEINNTGLNAILDGCPHVEHLDLRKCFNINLVEDIEKRCSE 247

Query: 242 RIRDLRHPNDSTHDYEF 258
           RIR LR P DST D+ F
Sbjct: 248 RIRVLRRPYDSTADFLF 264

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2115949	302	AT4G05460 "AT4G05460" [Arabido	0.864	0.884	0.512	8.2e-67
TAIR|locus:2115979	307	AT4G05490 "AT4G05490" [Arabido	0.877	0.882	0.411	2e-49
TAIR|locus:1005716270	246	AT4G05497 "AT4G05497" [Arabido	0.718	0.902	0.437	5.6e-45
TAIR|locus:2140715	220	AT4G03630 "AT4G03630" [Arabido	0.608	0.854	0.486	4.8e-39
TAIR|locus:2122308	317	FBW2 "AT4G08980" [Arabidopsis	0.854	0.832	0.262	6.5e-19
TAIR|locus:2174398	300	SKIP1 "SKP1 interacting partne	0.521	0.536	0.25	3.4e-07
TAIR|locus:2139697	333	AT4G11580 [Arabidopsis thalian	0.288	0.267	0.31	9.8e-07
UNIPROTKB|D6RDY7	444	FBXL7 "F-box/LRR-repeat protei	0.401	0.279	0.276	4.3e-05
TAIR|locus:4010713864	88	AT4G03635 [Arabidopsis thalian	0.239	0.840	0.32	4.3e-05
UNIPROTKB|F1N019	449	FBXL7 "Uncharacterized protein	0.407	0.280	0.246	4.6e-05

TAIR|locus:2115949 AT4G05460 "AT4G05460" [Arabidopsis thaliana (taxid:3702)]

 Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
 Identities = 141/275 (51%), Positives = 177/275 (64%)

Query:     9 ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDM 68
             ES +WT+LP ++TS IL ++GAI++L +AQ+VC SW R+C DP+MWR IDMHNLGDL DM
Sbjct:    15 ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74

Query:    69 DHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFC 128
             D++LE MCRHAVDRS G L+ I I YFGT +LL YIA           + C  I+D GF 
Sbjct:    75 DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134

Query:   129 EAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188
             EA+   P              E+L  VG  C  +++ KLN   H  P+ E DDDA AIAE
Sbjct:   135 EAVVKLPLEELELSYCSFSV-ESLRVVGQCCLNMKTLKLNK--H--PQKENDDDALAIAE 189

Query:   189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRH 248
              M  LRHLQL GN L++ GL AILD C +LE LDLR+CFNVNLVG L K C E ++ +RH
Sbjct:   190 TMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVVRH 249

Query:   249 PNDSTHDYEFGA--DFQDFCWSSVEDYPSGISDIE 281
             PNDS HD + G+  D   + +S + D  SG  D E
Sbjct:   250 PNDSIHDIDIGSSEDEDPYDFSDI-DLMSGDDDFE 283

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2115979 AT4G05490 "AT4G05490" [Arabidopsis thaliana (taxid:3702)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 116/282 (41%), Positives = 153/282 (54%)

Query:     7 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLW 66
             E++  +W +LP D+ S+IL ++  +++L +A++VC SW R+  DP +WR IDM NL  L+
Sbjct:    21 EEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLRRLY 80

Query:    67 DMDHDLEKMCRHAVDRSNGQLLSINIEY--FGTDELLQYIAXXXXXXXXXXXVSCYNISD 124
              + + +E  CRH VD S G LL  NI+   F T  LL Y+A           V    I+ 
Sbjct:    81 CI-YAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLR-VKGGQITS 138

Query:   125 QGFCEAIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAK 184
              G  EAI   P             +E  + +G  CP L++ KL   G      E D+DA 
Sbjct:   139 VGIFEAIVKLPLLEELELLYCSIEEEHFKTIGQACPNLKTLKLV--GFWSHLNESDNDAL 196

Query:   185 AIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIR 244
             AIA+ M GL HLQL  N LTN+GL AILD CPHLE LDLRQCFN+NL G L + C ERI+
Sbjct:   197 AIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINLFGDLERQCLERIK 256

Query:   245 DLRHPNDSTHDYEF-----GADFQDFCWSSVEDYPSGISDIE 281
             D R PND   DY +         +D      E+Y  G  D E
Sbjct:   257 DFRCPNDVLDDYNYVIFSDNGSIEDEKGEEEENYSYGSDDTE 298

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:1005716270 AT4G05497 "AT4G05497" [Arabidopsis thaliana (taxid:3702)]

 Score = 473 (171.6 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 101/231 (43%), Positives = 134/231 (58%)

Query:    12 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMH---NLGDLWDM 68
             +W +LP ++TS+IL ++GAI++L +AQRVC SW R+C DP+MWR ID+    NL +  ++
Sbjct:    20 NWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNSVEL 79

Query:    69 DHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFC 128
              + +E +C  AVD S G LL INI+Y      L YIA           V C  +  +G  
Sbjct:    80 FYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSRGVV 139

Query:   129 EAIKGFPXXXXXXXXXXXXXQEA-LEAVGSLCPLLRSFKLNNRGH-RCPKIECDDDAKAI 186
             EA    P             +E  L+ VG  CP LR+ KLN  G  +C    CD  A AI
Sbjct:   140 EAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNCTGDVKC----CDKVALAI 195

Query:   187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGK 237
             AE M GLRHLQLF N L+  GL AIL+ CPHL++L L QC N+N+VG + K
Sbjct:   196 AETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2140715 AT4G03630 "AT4G03630" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 93/191 (48%), Positives = 110/191 (57%)

Query:    75 MCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISDQG-FCEAIKG 133
             MC HAV  S G  + INIE+FGTD LL YIA             C  I+  G F EA+K 
Sbjct:    29 MC-HAVALSQGGCVEINIEHFGTDSLLTYIADRSSNLRHLGLAKCDQITGMGLFTEAMK- 86

Query:   134 FPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGL 193
              P              + LEA+G  C  L++ KLN +G + P    D DA  IA+ M  L
Sbjct:    87 LPLLEDLELSYCLIKGKNLEAIGFACLHLKTLKLNCQGFKFPGFTYDHDALGIAKRMPEL 146

Query:   194 RHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST 253
             R LQLFGN +++VGL AI D CPHLE LDLRQCFN+NLVG L K C ERI+DLR PNDST
Sbjct:   147 RCLQLFGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINLVGDLEKRCMERIKDLRRPNDST 206

Query:   254 HDYEFGADFQD 264
              DY +     D
Sbjct:   207 ADYPYDTSLLD 217

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122308 FBW2 "AT4G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 73/278 (26%), Positives = 116/278 (41%)

Query:     8 QESCD---WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGD 64
             +E C+   W +L  D    I S +   +VLT   RVC +W R    P  W+ ID+    +
Sbjct:     2 EEDCEFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWSN 61

Query:    65 LWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXVSCYNISD 124
              +     L++M    + RS G L  +++     D +  +IA           V    +++
Sbjct:    62 RFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLK-VPRSGLTN 120

Query:   125 QGFCEAIKGFPXXXXXXXXXX-XXXQEALEAVGSLCPLLRSFKLNNRGHRCPKIEC-DDD 182
              G     +                  EA++A+G  C  LR F  N        +   DD+
Sbjct:   121 SGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDE 180

Query:   183 AKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER 242
             A AIA  M  L+ L++  + ++  G+  IL  C  LE L+LR C++V L  K  K   E+
Sbjct:   181 AYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFK---EK 237

Query:   243 IRDLRHPNDSTHD-YEFGADFQDFCWSSVEDYPSGISD 279
               D++         Y+   D++D C     DY S  SD
Sbjct:   238 FPDMKVLGPRVIGFYDMINDWEDCC----SDYFSDGSD 271

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010608 "posttranscriptional regulation of gene expression" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

TAIR|locus:2174398 SKIP1 "SKP1 interacting partner 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 43/172 (25%), Positives = 68/172 (39%)

Query:     7 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGD-- 64
             E++  DW  L  ++   I+S++   ++ T    V  SWL +C DP +W   D+    D  
Sbjct:     2 EEDGSDWGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSY 61

Query:    65 -----LW--DMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAXXXXXXXXXXXV 117
                  LW  + +  ++ M R  VD S G L  I + +  +D  L Y A            
Sbjct:    62 PESTHLWSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIR 120

Query:   118 SCYNISDQGFCE-AIKGFPXXXXXXXXXXXXXQEALEAVGSLCPLLRSFKLN 168
             S  N++D    + A +                 + L  +G  CP LR  K N
Sbjct:   121 SSPNVTDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRN 172

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

TAIR|locus:2139697 AT4G11580 [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
 Identities = 31/100 (31%), Positives = 47/100 (47%)

Query:     9 ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDM 68
             E  +W  L  D+   I +K+  +D+   A RVC SW    H+  +W  +D+ NL +L D+
Sbjct:    10 EVSEWADLNKDILELIFNKLDVMDITMGASRVCISWFLASHNKTLWNTVDLTNLQEL-DV 68

Query:    69 DH-----DLEK---MCRHAVDRSNG--QLLSINIEYFGTD 98
                    D E+     +H VD  +G   LL+  I  F  D
Sbjct:    69 SRIFNFKDKERPIFFYKHPVDHKHGLTNLLTKIISRFFLD 108

GO:0005634 "nucleus" evidence=ISM

UNIPROTKB|D6RDY7 FBXL7 "F-box/LRR-repeat protein 7" [Homo sapiens (taxid:9606)]

 Score = 93 (37.8 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
 Identities = 37/134 (27%), Positives = 54/134 (40%)

Query:     7 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLW 66
             EQ S D  +LP      I S +   + L    RVC  W  +  DP +WR I +   G+  
Sbjct:    63 EQASID--RLPDHSMVQIFSFLPT-NQLCRCARVCRRWYNLAWDPRLWRTIRL--TGETI 117

Query:    67 DMDHDLEKMCRHAV-DRSNGQLLSINIEYFG----TDELLQYIAXXXXXXXXXXXVSCYN 121
             ++D  L+ + R    D  N  L+   +   G    TD  L  IA             CYN
Sbjct:   118 NVDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYN 177

Query:   122 ISDQGFCEAIKGFP 135
             IS++   + +   P
Sbjct:   178 ISNEAVFDVVSLCP 191

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

TAIR|locus:4010713864 AT4G03635 [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 24/75 (32%), Positives = 32/75 (42%)

Query:    94 YFGTDELLQYIAXXXXXXXXXXXVSCYNISDQGFCEAIKGFPXXXXXXXXXXXXXQEALE 153
             +FG D L  YIA             CY ++  GF  A+                 Q  L+
Sbjct:     3 HFGNDSLYSYIAQRSSNLRCLRLAMCYPLTGNGFVSAVMKL-SFLEELDISQGYTQLDLK 61

Query:   154 AVGSLCPLLRSFKLN 168
             A+G  CPLL++FKLN
Sbjct:    62 AIGHSCPLLKTFKLN 76

GO:0005634 "nucleus" evidence=ISM

UNIPROTKB|F1N019 FBXL7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 92 (37.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 33/134 (24%), Positives = 53/134 (39%)

Query:     7 EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLW 66
             ++E     +LP      + S +   + L    RVC  W  +  DP +WR I +   G+  
Sbjct:    66 QKEQASIERLPDHAMVQVFSFLPT-NQLCRCARVCRRWYNLAWDPRLWRTIRL--TGETI 122

Query:    67 DMDHDLEKMCRHAV-DRSNGQLLSINIEYFG----TDELLQYIAXXXXXXXXXXXVSCYN 121
             ++D  L+ + R    D  N  L+   +   G    TD  L  IA             CYN
Sbjct:   123 NVDRALKVLTRRLCQDTPNVCLMLETVSVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYN 182

Query:   122 ISDQGFCEAIKGFP 135
             IS++   + +   P
Sbjct:   183 ISNEAVFDVVSLCP 196

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M0U9	SKI19_ARATH	No assigned EC number	0.5656	0.9158	0.9370	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028376001 SubName- Full=Putative uncharacterized protein (Chromosome chr10 scaffold_43, whole genome shotgun sequence); (321 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
pfam12937	47	pfam12937, F-box-like, F-box-like	2e-06
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	1e-05

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 13 WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMH 60
           + LP ++   I S +   D L     VC  W  +  D ++WR + + 
Sbjct: 1  LSDLPDEILLQIFSYLDPRD-LLRLALVCRRWRELASDDSLWRRLCLR 47

This is an F-box-like family. Length = 47

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 36/148 (24%), Positives = 56/148 (37%), Gaps = 28/148 (18%)

Query: 107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSL-SQEALEAVGSLCPLLRSF 165
               L+ L L     I D+G     +  P L+ L+L  C   +   + A+ + CP L++ 
Sbjct: 50  NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTI 109

Query: 166 KL--NNRGH------------RCPKIE------CDDDAKAIAE----NMHGLRHLQLFG- 200
            L  +  GH             C  ++      CD   K + E        L  L L   
Sbjct: 110 NLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLERLSLNNC 169

Query: 201 NELTNVGLQAIL--DACPHLESLDLRQC 226
             LT+  + AIL  +  P+L  L+ R C
Sbjct: 170 RNLTDQSIPAILASNYFPNLSVLEFRGC 197

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
KOG4341	483	consensus F-box protein containing LRR [General fu	99.95
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.95
KOG4341	483	consensus F-box protein containing LRR [General fu	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.46
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.38
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.26
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.22
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.88
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.87
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.86
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.78
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.69
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.69
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.61
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.55
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.45
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.43
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.3
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.97
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.93
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.91
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.72
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.69
KOG2997	366	consensus F-box protein FBX9 [General function pre	97.68
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.63
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.54
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.49
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.49
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.44
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.44
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.34
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.24
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.23
KOG4308	478	consensus LRR-containing protein [Function unknown	97.2
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.18
PLN03150	623	hypothetical protein; Provisional	97.1
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	97.09
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.07
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.07
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.02
KOG4308	478	consensus LRR-containing protein [Function unknown	96.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.78
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.76
PLN03150	623	hypothetical protein; Provisional	96.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.72
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.7
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.67
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.62
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.61
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.37
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.17
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.05
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.01
KOG0472	565	consensus Leucine-rich repeat protein [Function un	95.98
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.76
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.5
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	95.26
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.25
PF13013	109	F-box-like_2: F-box-like domain	95.1
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	95.01
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	94.47
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	94.28
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	94.07
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.72
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.7
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	93.44
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	93.18
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	93.14
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	92.82
KOG0472	565	consensus Leucine-rich repeat protein [Function un	92.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	92.74
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	92.73
PRK15386	426	type III secretion protein GogB; Provisional	91.81
PRK15386	426	type III secretion protein GogB; Provisional	91.38
PF09372	97	PRANC: PRANC domain; InterPro: IPR018272 This pres	87.91
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.84
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	87.21
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	87.14
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	80.46

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.95  E-value=6.9e-29  Score=207.43  Aligned_cols=262  Identities=19%  Similarity=0.265  Sum_probs=182.2

Q ss_pred             CCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHHhccCCCceEEec
Q 021667           13 WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINI   92 (309)
Q Consensus        13 ~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l   92 (309)
                      .-.||+|++..||++|+.+.+. ++++||+.|+..+.+..-|+++++....-. .....+.    ..+.+.++.++++.+
T Consensus        72 ~~~LPpEl~lkvFS~LDtksl~-r~a~~c~~~n~~AlD~~~~q~idL~t~~rD-v~g~VV~----~~~~Rcgg~lk~LSl  145 (483)
T KOG4341|consen   72 SRSLPPELLLKVFSMLDTKSLC-RAAQCCTMWNKLALDGSCWQHIDLFTFQRD-VDGGVVE----NMISRCGGFLKELSL  145 (483)
T ss_pred             cccCCHHHHHHHHHHHhHHHHH-HHHHHHHHhhhhhhccccceeeehhcchhc-CCCccee----hHhhhhccccccccc
Confidence            3469999999999999999995 999999999999999999999999875422 2233333    344444677888877


Q ss_pred             c--ccCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCCCcEEEecc
Q 021667           93 E--YFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLNN  169 (309)
Q Consensus        93 ~--~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~  169 (309)
                      .  ..+.++.+..+...||++++|.+.+|..+|+..+..+.+.|++|++|+|..| .+++..++.+++.||+|+.|++++
T Consensus       146 rG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSw  225 (483)
T KOG4341|consen  146 RGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSW  225 (483)
T ss_pred             cccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhcc
Confidence            4  3667777788888888888888888888888888888888888888888887 778888888888888888888877


Q ss_pred             CCCCCC-C--------------------cccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCC
Q 021667          170 RGHRCP-K--------------------IECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCF  227 (309)
Q Consensus       170 ~~~~~~-~--------------------~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~  227 (309)
                      |.--.. .                    -...+.+..+...++.+..+++..| .++|.++..+...|.+|+.|+.++|.
T Consensus       226 c~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t  305 (483)
T KOG4341|consen  226 CPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCT  305 (483)
T ss_pred             CchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCC
Confidence            321100 0                    0012222223334444555555555 57777777777677777777777777


Q ss_pred             CcCc--hhHHHHHhHhccCceecCCCC-CCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          228 NVNL--VGKLGKICAERIRDLRHPNDS-THDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       228 ~~~~--~~~l~~~~~~~L~~L~l~~~~-~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      .+++  ..++..+++ +|+.|-+++|. ++|.||+.+. ..   ++.|+++|...|..++|
T Consensus       306 ~~~d~~l~aLg~~~~-~L~~l~l~~c~~fsd~~ft~l~-rn---~~~Le~l~~e~~~~~~d  361 (483)
T KOG4341|consen  306 DITDEVLWALGQHCH-NLQVLELSGCQQFSDRGFTMLG-RN---CPHLERLDLEECGLITD  361 (483)
T ss_pred             CCchHHHHHHhcCCC-ceEEEeccccchhhhhhhhhhh-cC---Chhhhhhcccccceehh
Confidence            7666  446667777 77777777777 7777777765 22   33444444444444333

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7e-28  Score=193.46  Aligned_cols=232  Identities=22%  Similarity=0.302  Sum_probs=175.2

Q ss_pred             CCCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHH--------
Q 021667            9 ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAV--------   80 (309)
Q Consensus         9 ~~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~--------   80 (309)
                      +...|..|||||+..||+.|..++++ +++.|||||++++.+.++|..+++....   ..+.....++++.+        
T Consensus        94 pgv~~~slpDEill~IFs~L~kk~LL-~~~~VC~Rfyr~~~de~lW~~lDl~~r~---i~p~~l~~l~~rgV~v~Rlar~  169 (419)
T KOG2120|consen   94 PGVSWDSLPDEILLGIFSCLCKKELL-KVSGVCKRFYRLASDESLWQTLDLTGRN---IHPDVLGRLLSRGVIVFRLARS  169 (419)
T ss_pred             CCCCcccCCHHHHHHHHHhccHHHHH-HHHHHHHHHhhccccccceeeeccCCCc---cChhHHHHHHhCCeEEEEcchh
Confidence            34569999999999999999999996 9999999999999999999999998755   34444444433221        


Q ss_pred             -----------hccCCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CC
Q 021667           81 -----------DRSNGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SL  147 (309)
Q Consensus        81 -----------~~~~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~  147 (309)
                                 ......++.++++. .++.+.+..+...|.+|+.|.|.+. .+.|.....+++ -.+|++|+|+.| ++
T Consensus       170 ~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAk-N~~L~~lnlsm~sG~  247 (419)
T KOG2120|consen  170 FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAK-NSNLVRLNLSMCSGF  247 (419)
T ss_pred             hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhc-cccceeecccccccc
Confidence                       12234577777764 5677778888888999999888854 777766665554 678889999988 88


Q ss_pred             CHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCC
Q 021667          148 SQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQ  225 (309)
Q Consensus       148 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~  225 (309)
                      +..++..+..+|..|..|+++.|+...+.     .-.++..--++|+.|+|+|+  .+.+..+..+.+.||+|.+|||++
T Consensus       248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~-----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD  322 (419)
T KOG2120|consen  248 TENALQLLLSSCSRLDELNLSWCFLFTEK-----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD  322 (419)
T ss_pred             chhHHHHHHHhhhhHhhcCchHhhccchh-----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence            88888888888899999999887766432     12233333477888888887  677777888888888888888888


Q ss_pred             CCCcCc-hhHHHHHhHhccCceecCCCC
Q 021667          226 CFNVNL-VGKLGKICAERIRDLRHPNDS  252 (309)
Q Consensus       226 c~~~~~-~~~l~~~~~~~L~~L~l~~~~  252 (309)
                      |..+++ .......++ .|++|.++.|.
T Consensus       323 ~v~l~~~~~~~~~kf~-~L~~lSlsRCY  349 (419)
T KOG2120|consen  323 SVMLKNDCFQEFFKFN-YLQHLSLSRCY  349 (419)
T ss_pred             ccccCchHHHHHHhcc-hheeeehhhhc
Confidence            888776 223334566 78888888887

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.76  E-value=3.2e-19  Score=149.87  Aligned_cols=193  Identities=21%  Similarity=0.273  Sum_probs=102.4

Q ss_pred             CCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCC-CCCceeecCCCCCCcccchhHHHHHHHHHhccCCCceE
Q 021667           11 CDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDP-AMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLS   89 (309)
Q Consensus        11 ~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~-~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   89 (309)
                      +.|++|  ++...+  +++..... .++.+|+.|+.+...+ ..|....+.                  .+...|++++.
T Consensus       164 pnIehL--~l~gc~--~iTd~s~~-sla~~C~~l~~l~L~~c~~iT~~~Lk------------------~la~gC~kL~~  220 (483)
T KOG4341|consen  164 PNIEHL--ALYGCK--KITDSSLL-SLARYCRKLRHLNLHSCSSITDVSLK------------------YLAEGCRKLKY  220 (483)
T ss_pred             Cchhhh--hhhcce--eccHHHHH-HHHHhcchhhhhhhcccchhHHHHHH------------------HHHHhhhhHHH
Confidence            345555  444444  67777774 9999999999998865 555544333                  22223444444


Q ss_pred             Eecc--ccC--------------------------ChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEE
Q 021667           90 INIE--YFG--------------------------TDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELE  141 (309)
Q Consensus        90 l~l~--~~~--------------------------~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~  141 (309)
                      ++++  ..+                          .++.+..+..+++-+..+++..|..+|+.++..+...|..|+.|+
T Consensus       221 lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~  300 (483)
T KOG4341|consen  221 LNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLC  300 (483)
T ss_pred             hhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhc
Confidence            4442  233                          334444444444445555555555555555555555555555555


Q ss_pred             ecCC-CCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCC
Q 021667          142 LSYC-SLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLE  219 (309)
Q Consensus       142 L~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~  219 (309)
                      .+++ .+++..+..+..++++|+.|-+..|..     -.+..+..++++++.|+.+++.++ .+++..+..+..+||.|+
T Consensus       301 ~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-----fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr  375 (483)
T KOG4341|consen  301 YSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-----FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR  375 (483)
T ss_pred             ccCCCCCchHHHHHHhcCCCceEEEeccccch-----hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence            5555 455555555555555555555544221     124445555555555555555555 444444555555555555


Q ss_pred             eeecCCCCCcCc
Q 021667          220 SLDLRQCFNVNL  231 (309)
Q Consensus       220 ~L~l~~c~~~~~  231 (309)
                      .|.++.|..+++
T Consensus       376 ~lslshce~itD  387 (483)
T KOG4341|consen  376 VLSLSHCELITD  387 (483)
T ss_pred             cCChhhhhhhhh
Confidence            555555555554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.46  E-value=7.2e-12  Score=108.16  Aligned_cols=192  Identities=19%  Similarity=0.181  Sum_probs=123.0

Q ss_pred             CCCceEEeccc-cCCh---HHHHHHHhcCCCccEEEeCCCCCCCHHHHHHH---HhcC-CCcCEEEecCCCCCHHHHHH-
Q 021667           84 NGQLLSINIEY-FGTD---ELLQYIANRSRNLRNLRLVSCYNISDQGFCEA---IKGF-PLLEELELSYCSLSQEALEA-  154 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~---~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~L~~~~~~~~~~~~-  154 (309)
                      .+.++.++++. .+..   ..+..+... ++|++|+++++ .+++.+...+   ...+ ++|++|++++|.++...... 
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            67888888854 3332   233334443 56888888865 5665554443   3345 78888888888776443333 


Q ss_pred             --HHhcCCCCcEEEeccCCCCCCCcccchhHHHH---HhcCCCCcEEEecCCccChHHHHHH---HHhCCCCCeeecCCC
Q 021667          155 --VGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI---AENMHGLRHLQLFGNELTNVGLQAI---LDACPHLESLDLRQC  226 (309)
Q Consensus       155 --l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~i~~~~l~~l---~~~~~~L~~L~l~~c  226 (309)
                        ....+++|++|++.++.+..      ..+..+   ...+++|++|++++|.+++.+...+   +..+++|++|++++|
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~------~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n  231 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGD------AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN  231 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCch------HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence              33456788888888755542      222222   2255688888888888877665544   334677888888887


Q ss_pred             CCcCc-hhHHHHHh----HhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          227 FNVNL-VGKLGKIC----AERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       227 ~~~~~-~~~l~~~~----~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      ..... ...+...+    + .|++|++++|.+++.+...+. +.+...+.+..+|+++..+.++
T Consensus       232 ~l~~~~~~~l~~~~~~~~~-~L~~L~l~~n~i~~~~~~~l~-~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         232 NLTDAGAAALASALLSPNI-SLLTLSLSCNDITDDGAKDLA-EVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             cCchHHHHHHHHHHhccCC-CceEEEccCCCCCcHHHHHHH-HHHhcCCCccEEECCCCCCcHH
Confidence            64331 33333333    4 788888888888888777766 5555667778888887766443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.44  E-value=4e-14  Score=85.22  Aligned_cols=46  Identities=30%  Similarity=0.679  Sum_probs=40.3

Q ss_pred             CCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeec
Q 021667           13 WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDM   59 (309)
Q Consensus        13 ~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l   59 (309)
                      |..||+|++.+||+||+..|+. ++++|||+|+.++.++.+|+++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~-~~~~vcr~w~~~~~~~~lW~~~~~   46 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLL-RLSLVCRRWRRIANDNSLWRRLCL   46 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHH-HHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred             ChHhHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHCChhhhhhhcc
Confidence            6799999999999999999995 999999999999998899998764

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.43  E-value=2.7e-11  Score=104.58  Aligned_cols=189  Identities=17%  Similarity=0.112  Sum_probs=116.2

Q ss_pred             CCceEEeccc-cCChHHHHHHH---hcC-CCccEEEeCCCCCCCHHH---HHHHHhcCCCcCEEEecCCCCCHHHHHHHH
Q 021667           85 GQLLSINIEY-FGTDELLQYIA---NRS-RNLRNLRLVSCYNISDQG---FCEAIKGFPLLEELELSYCSLSQEALEAVG  156 (309)
Q Consensus        85 ~~l~~l~l~~-~~~~~~l~~l~---~~~-~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  156 (309)
                      +++++|++.. .+++..+..+.   ..+ ++|+.|++.+| .++..+   +...+..+++|++|++++|.+++.++..+.
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  186 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA  186 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH
Confidence            5688888843 45544444332   234 78888888876 455333   333445567888888888877766665554


Q ss_pred             hc---CCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhC----CCCCeeecCCCCCc
Q 021667          157 SL---CPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDAC----PHLESLDLRQCFNV  229 (309)
Q Consensus       157 ~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~----~~L~~L~l~~c~~~  229 (309)
                      ..   +++|+.|+++++.+...  . ...+......+++|++|++++|.+++.++..++..+    +.|++|++++|...
T Consensus       187 ~~l~~~~~L~~L~L~~n~i~~~--~-~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         187 EGLKANCNLEVLDLNNNGLTDE--G-ASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHhCCCCCEEeccCCccChH--H-HHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence            33   35888888886554321  1 111222333677888888888888887777776664    57888888887644


Q ss_pred             Cc-hhHHH---HHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCC
Q 021667          230 NL-VGKLG---KICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGIS  278 (309)
Q Consensus       230 ~~-~~~l~---~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s  278 (309)
                      .. ...+.   ..++ +|+.+++++|.+++.+.....+..-.....++++|+.
T Consensus       264 ~~~~~~l~~~~~~~~-~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         264 DDGAKDLAEVLAEKE-SLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             cHHHHHHHHHHhcCC-CccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence            22 22232   2334 6888888888888776666654331122366666654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=4.9e-13  Score=108.50  Aligned_cols=171  Identities=20%  Similarity=0.226  Sum_probs=133.4

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhc-CCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSL-CPL  161 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~-~~~  161 (309)
                      |..++.+.++. .+.|.....+++ -.+|+.|+|+.|..++..++..+.+.|..|.+|+|++|....+.+..+..+ -++
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            66788888854 677888888887 689999999999999999999999999999999999996555545554444 479


Q ss_pred             CcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHH-HHh
Q 021667          162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLG-KIC  239 (309)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~-~~~  239 (309)
                      |+.|+++++.-    .-....+..+.+.||+|.+|+|+.| .+++..+..+. ..+.|++|.++.|..+..-..+. ...
T Consensus       288 l~~LNlsG~rr----nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s~  362 (419)
T KOG2120|consen  288 LTQLNLSGYRR----NLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYDIIPETLLELNSK  362 (419)
T ss_pred             hhhhhhhhhHh----hhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcCCChHHeeeeccC
Confidence            99999987321    1235567788889999999999999 88886565555 78999999999999887633222 334


Q ss_pred             HhccCceecCCCCCCchhhhhhh
Q 021667          240 AERIRDLRHPNDSTHDYEFGADF  262 (309)
Q Consensus       240 ~~~L~~L~l~~~~~~d~~~~~~~  262 (309)
                      | .|..|++.|+ ++|..+..+.
T Consensus       363 p-sl~yLdv~g~-vsdt~mel~~  383 (419)
T KOG2120|consen  363 P-SLVYLDVFGC-VSDTTMELLK  383 (419)
T ss_pred             c-ceEEEEeccc-cCchHHHHHH
Confidence            5 8999999886 4455555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.28  E-value=8.3e-11  Score=97.60  Aligned_cols=195  Identities=18%  Similarity=0.134  Sum_probs=132.6

Q ss_pred             CCCceEEeccc-cC---ChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHH------------HHhcCCCcCEEEecCCCC
Q 021667           84 NGQLLSINIEY-FG---TDELLQYIANRSRNLRNLRLVSCYNISDQGFCE------------AIKGFPLLEELELSYCSL  147 (309)
Q Consensus        84 ~~~l~~l~l~~-~~---~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~------------~~~~~~~L~~L~L~~~~~  147 (309)
                      +|+++.++++. -+   +-+.+..+...|..|++|.|.+| .++..+=..            .+..-+.|+.+....|.+
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            56899999853 23   33556666667899999999987 444333222            122347888998888866


Q ss_pred             CHHH---HHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH---HhCCCCCee
Q 021667          148 SQEA---LEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL---DACPHLESL  221 (309)
Q Consensus       148 ~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L  221 (309)
                      .+.+   +....+.+|.|+.+.+..+++....   ...+..-..+||+|+.|+|..|.++..+-..+.   ..+|+|++|
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG---~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El  246 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEG---VTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL  246 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCch---hHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence            5444   3444567789999999876665431   122222234999999999999988877655444   457789999


Q ss_pred             ecCCCCCcCc-----hhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCC
Q 021667          222 DLRQCFNVNL-----VGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVS  284 (309)
Q Consensus       222 ~l~~c~~~~~-----~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~  284 (309)
                      .+++|..-+.     ..++....| +|+.|.+++|.++-.+..+..--. ..-|++..++++++.+..
T Consensus       247 ~l~dcll~~~Ga~a~~~al~~~~p-~L~vl~l~gNeIt~da~~~la~~~-~ek~dL~kLnLngN~l~e  312 (382)
T KOG1909|consen  247 NLGDCLLENEGAIAFVDALKESAP-SLEVLELAGNEITRDAALALAACM-AEKPDLEKLNLNGNRLGE  312 (382)
T ss_pred             cccccccccccHHHHHHHHhccCC-CCceeccCcchhHHHHHHHHHHHH-hcchhhHHhcCCcccccc
Confidence            9999987665     234445566 999999999998655444432111 146788899999998843

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.26  E-value=1.1e-10  Score=96.79  Aligned_cols=232  Identities=20%  Similarity=0.178  Sum_probs=151.2

Q ss_pred             HHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHHhccCCCceEEeccccCCh----HH---HHHHH---hcCCCc
Q 021667           42 SSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTD----EL---LQYIA---NRSRNL  111 (309)
Q Consensus        42 r~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~----~~---l~~l~---~~~~~L  111 (309)
                      +--......-.-+..+++++..   +-... .+.+...+.. .+.++..+++..++.    ..   +..++   ..||+|
T Consensus        20 ~~v~~~~~~~~s~~~l~lsgnt---~G~EA-a~~i~~~L~~-~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L   94 (382)
T KOG1909|consen   20 KDVEEELEPMDSLTKLDLSGNT---FGTEA-ARAIAKVLAS-KKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKL   94 (382)
T ss_pred             hhHHHHhcccCceEEEeccCCc---hhHHH-HHHHHHHHhh-cccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence            3333444433446778877644   22222 2222223322 337777777653332    22   23332   248899


Q ss_pred             cEEEeCCCCCCC---HHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHH------------hcCCCCcEEEeccCCCCCCC
Q 021667          112 RNLRLVSCYNIS---DQGFCEAIKGFPLLEELELSYCSLSQEALEAVG------------SLCPLLRSFKLNNRGHRCPK  176 (309)
Q Consensus       112 ~~L~l~~~~~~~---~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~------------~~~~~L~~L~l~~~~~~~~~  176 (309)
                      +.|+|+.+ .++   ..++..++++|..|++|.|.+|.++..+-..++            ..-|+|+.+..+.+.+... 
T Consensus        95 ~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~-  172 (382)
T KOG1909|consen   95 QKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG-  172 (382)
T ss_pred             eEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc-
Confidence            99999954 555   455667888999999999999988765544332            3457899999886555422 


Q ss_pred             cccchhHHHHHhcCCCCcEEEecCCccChHHHHHH---HHhCCCCCeeecCCCCCcCc----hhHHHHHhHhccCceecC
Q 021667          177 IECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAI---LDACPHLESLDLRQCFNVNL----VGKLGKICAERIRDLRHP  249 (309)
Q Consensus       177 ~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l---~~~~~~L~~L~l~~c~~~~~----~~~l~~~~~~~L~~L~l~  249 (309)
                        .-..+....+.+|.|+.+.+..|.|..+++..+   +..||+|+.|+|+++.....    .+.....++ +|+.|+++
T Consensus       173 --ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~-~L~El~l~  249 (382)
T KOG1909|consen  173 --GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP-HLRELNLG  249 (382)
T ss_pred             --cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc-hheeeccc
Confidence              122233344578999999999998888777444   34599999999999775554    223334456 99999999


Q ss_pred             CCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667          250 NDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV  283 (309)
Q Consensus       250 ~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~  283 (309)
                      +|.+.+.|..++....-..-|.++.+++.+++.-
T Consensus       250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            9999998888876444335678888888777653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.26  E-value=1.6e-11  Score=111.96  Aligned_cols=162  Identities=29%  Similarity=0.421  Sum_probs=127.5

Q ss_pred             cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC--CCC--HHHHHHHHhcCCCCcEEEeccC
Q 021667           95 FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC--SLS--QEALEAVGSLCPLLRSFKLNNR  170 (309)
Q Consensus        95 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~--~~~~~~l~~~~~~L~~L~l~~~  170 (309)
                      ......+..+...+++|+.|.+.+|..+++.++..+...+++|++|+++++  .+.  ......+...|++|+.|++..+
T Consensus       174 ~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~  253 (482)
T KOG1947|consen  174 LLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGC  253 (482)
T ss_pred             cccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhh
Confidence            345555666776789999999999999999888889999999999999873  222  2234457788899999999864


Q ss_pred             CCCCCCcccchhHHHHHhcCCCCcEEEecCCc-cChHHHHHHHHhCCCCCeeecCCCCCcCc--hhHHHHHhHhccCcee
Q 021667          171 GHRCPKIECDDDAKAIAENMHGLRHLQLFGNE-LTNVGLQAILDACPHLESLDLRQCFNVNL--VGKLGKICAERIRDLR  247 (309)
Q Consensus       171 ~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~~~~--~~~l~~~~~~~L~~L~  247 (309)
                      ..     ..+..+.+++..|++|++|.+.+|. +++.++..++..|++|++|++++|..+++  ...+...|+ +++.|.
T Consensus       254 ~~-----isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~-~l~~l~  327 (482)
T KOG1947|consen  254 GL-----VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP-NLRELK  327 (482)
T ss_pred             hc-----cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc-chhhhh
Confidence            42     3488889999889999999988884 89999999999999999999999999877  446677788 888776


Q ss_pred             cCCCC----CCchhhhhhh
Q 021667          248 HPNDS----THDYEFGADF  262 (309)
Q Consensus       248 l~~~~----~~d~~~~~~~  262 (309)
                      +.+..    +++.++....
T Consensus       328 ~~~~~~c~~l~~~~l~~~~  346 (482)
T KOG1947|consen  328 LLSLNGCPSLTDLSLSGLL  346 (482)
T ss_pred             hhhcCCCccHHHHHHHHhh
Confidence            65543    5655554443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.22  E-value=7.2e-11  Score=107.71  Aligned_cols=180  Identities=24%  Similarity=0.356  Sum_probs=135.8

Q ss_pred             HHHHHhcCCCccEEEeCCCC-CCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCCCcEEEeccC-CCCCCCc
Q 021667          101 LQYIANRSRNLRNLRLVSCY-NISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLNNR-GHRCPKI  177 (309)
Q Consensus       101 l~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~  177 (309)
                      +..+...+..++.+.+..+. .........+...++.|++|.+..+ .+.+..+..++..+++|+.|.++++ ....   
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---  229 (482)
T KOG1947|consen  153 LLELSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLIT---  229 (482)
T ss_pred             hHHHHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccc---
Confidence            34444445567777766554 3445566677777999999999999 8888888899999999999999863 2111   


Q ss_pred             ccchhHHHHHhcCCCCcEEEecCCc-cChHHHHHHHHhCCCCCeeecCCCCCcCc--hhHHHHHhHhccCceecCCCC-C
Q 021667          178 ECDDDAKAIAENMHGLRHLQLFGNE-LTNVGLQAILDACPHLESLDLRQCFNVNL--VGKLGKICAERIRDLRHPNDS-T  253 (309)
Q Consensus       178 ~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~~~~--~~~l~~~~~~~L~~L~l~~~~-~  253 (309)
                      ........+...+++|+.|++.++. ++|.++..++..|++|+.|.+.+|..+++  +..+...|+ +|++|++++|. +
T Consensus       230 ~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~-~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  230 LSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCP-SLRELDLSGCHGL  308 (482)
T ss_pred             cchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcC-cccEEeeecCccc
Confidence            1122334467788999999999995 99999999999999999999999998776  668888999 99999999998 7


Q ss_pred             CchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          254 HDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       254 ~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      +|.++.... ..|+....+.-.....|..+++
T Consensus       309 ~d~~l~~~~-~~c~~l~~l~~~~~~~c~~l~~  339 (482)
T KOG1947|consen  309 TDSGLEALL-KNCPNLRELKLLSLNGCPSLTD  339 (482)
T ss_pred             hHHHHHHHH-HhCcchhhhhhhhcCCCccHHH
Confidence            899998886 5676644444333433444433

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.6e-10  Score=95.34  Aligned_cols=141  Identities=22%  Similarity=0.236  Sum_probs=107.4

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCC-CHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSL-SQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      ..+|+.+.|.++ .+.+.+....++.||+++.|+|+.|-+ ....+..++..+|+|+.|+++.+.+..+  . ++.   .
T Consensus       120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~--~-~s~---~  192 (505)
T KOG3207|consen  120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF--I-SSN---T  192 (505)
T ss_pred             HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC--c-ccc---c
Confidence            678888889866 666666667888899999999999933 4566888999999999999998666543  1 111   1


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      ...+++|+.|.|++|.++.+.+..++..+|.|+.|.+.++..+.....-..... .|++|+|++|++-|.
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~-~L~~LdLs~N~li~~  261 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ-TLQELDLSNNNLIDF  261 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh-HHhhccccCCccccc
Confidence            116789999999999999999999999999999999998864443222223334 799999999985433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.94  E-value=2.3e-09  Score=106.17  Aligned_cols=87  Identities=17%  Similarity=0.002  Sum_probs=41.7

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWS  268 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~  268 (309)
                      .+++|++|++.+|.++...... +..+++|++|++++|............++ +|+.|++++|.+++..-..+.     .
T Consensus       210 ~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~-----~  282 (968)
T PLN00113        210 QMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNLTGPIPSSLGNLK-NLQYLFLYQNKLSGPIPPSIF-----S  282 (968)
T ss_pred             CcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCceeccccChhHhCCC-CCCEEECcCCeeeccCchhHh-----h
Confidence            4455555555555443222222 23455566666665544333333334445 666666666665433222222     3


Q ss_pred             CcCCCCCCCCcccc
Q 021667          269 SVEDYPSGISDIEL  282 (309)
Q Consensus       269 ~~~l~~~~~s~~~~  282 (309)
                      ...+..++++++..
T Consensus       283 l~~L~~L~Ls~n~l  296 (968)
T PLN00113        283 LQKLISLDLSDNSL  296 (968)
T ss_pred             ccCcCEEECcCCee
Confidence            34556666665543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.88  E-value=4.2e-09  Score=104.30  Aligned_cols=180  Identities=17%  Similarity=0.027  Sum_probs=99.4

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.|+.|+++. .++...-..+...+++|++|+++++ .++.. +.  ...+++|++|+|++|.+....... ...+++|
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~-~p--~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L  166 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGS-IP--RGSIPNLETLDLSNNMLSGEIPND-IGSFSSL  166 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccc-cC--ccccCCCCEEECcCCcccccCChH-HhcCCCC
Confidence            45566666643 2222222333434666666666644 22211 00  123567777777776554322222 2346777


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+..      .....+. ++++|++|++++|.++..... -+..+++|+.|++++|............++ +
T Consensus       167 ~~L~L~~n~l~~------~~p~~~~-~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~  237 (968)
T PLN00113        167 KVLDLGGNVLVG------KIPNSLT-NLTSLEFLTLASNQLVGQIPR-ELGQMKSLKWIYLGYNNLSGEIPYEIGGLT-S  237 (968)
T ss_pred             CEEECccCcccc------cCChhhh-hCcCCCeeeccCCCCcCcCCh-HHcCcCCccEEECcCCccCCcCChhHhcCC-C
Confidence            777777644321      1112333 677788888887765533222 233577788888887765544444445566 8


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      |++|++++|.++...-..+.     ....++.++++.+..
T Consensus       238 L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l  272 (968)
T PLN00113        238 LNHLDLVYNNLTGPIPSSLG-----NLKNLQYLFLYQNKL  272 (968)
T ss_pred             CCEEECcCceeccccChhHh-----CCCCCCEEECcCCee
Confidence            88888888877654333443     445677777776654

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.87  E-value=1.8e-09  Score=62.82  Aligned_cols=40  Identities=28%  Similarity=0.596  Sum_probs=37.1

Q ss_pred             CcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCce
Q 021667           16 LPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRN   56 (309)
Q Consensus        16 LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~   56 (309)
                      ||+|++..||.+++..|+. +++.|||+|+.++..+.+|+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~-~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLL-RLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999995 999999999999998888864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.86  E-value=2.8e-10  Score=68.83  Aligned_cols=44  Identities=25%  Similarity=0.604  Sum_probs=36.0

Q ss_pred             CCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCce
Q 021667           12 DWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRN   56 (309)
Q Consensus        12 ~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~   56 (309)
                      .|.+||+|++.+||++|+..+++ ++++|||+|++++.++..|.+
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~-~l~~vsk~~~~~~~~~~~~~~   45 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLL-RLSLVSKRWRSLVDSPRLWKK   45 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHH-HHCTT-HHHHHHHTTHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHH-HHHHHhhHHHHHHcCCCccHH
Confidence            46789999999999999999996 999999999999987666543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=2.1e-09  Score=91.94  Aligned_cols=142  Identities=20%  Similarity=0.130  Sum_probs=62.2

Q ss_pred             HHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchh
Q 021667          103 YIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDD  182 (309)
Q Consensus       103 ~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~  182 (309)
                      ..++.|++++.|+|+..--..-..+..+++.+|+|+.|+|+.|.+....-.......+.|+.|.++.|++.      ...
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls------~k~  213 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS------WKD  213 (505)
T ss_pred             hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC------HHH
Confidence            34444666666666543222234455555556666666666552211000011113445566666555543      233


Q ss_pred             HHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCc-hhHHHHHhHhccCceecCCCCC
Q 021667          183 AKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNL-VGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       183 ~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~-~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      +..+...+|+|+.|.+.+| .+.......  +....|++|+|++++.++- .......+| .|+.|+++.+.+
T Consensus       214 V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~~l~-~L~~Lnls~tgi  283 (505)
T KOG3207|consen  214 VQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVGTLP-GLNQLNLSSTGI  283 (505)
T ss_pred             HHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCccccccccccccccc-chhhhhccccCc
Confidence            3344445566665555555 222111110  0122355555555544442 123333344 455555544444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.69  E-value=3.1e-08  Score=92.86  Aligned_cols=144  Identities=17%  Similarity=0.191  Sum_probs=103.7

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      -.+|++|++++...+...-...+...+|.|++|.+.+..+....+..++.++|+|..|++++....        .+..+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~--------nl~GIS  192 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS--------NLSGIS  192 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc--------CcHHHh
Confidence            468899999876566555556677778999999998887766668888888999999999863332        234555


Q ss_pred             hcCCCCcEEEecCCccCh-HHHHHHHHhCCCCCeeecCCCCCcCchh------HHHHHhHhccCceecCCCCCCchhhhh
Q 021667          188 ENMHGLRHLQLFGNELTN-VGLQAILDACPHLESLDLRQCFNVNLVG------KLGKICAERIRDLRHPNDSTHDYEFGA  260 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~-~~l~~l~~~~~~L~~L~l~~c~~~~~~~------~l~~~~~~~L~~L~l~~~~~~d~~~~~  260 (309)
                       ++++|+.|.+.+-.+.. ..+..++ .+.+|+.||+|.-.......      +....+| +||.|+.+|..+++.-+..
T Consensus       193 -~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi~~~~le~  269 (699)
T KOG3665|consen  193 -RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP-ELRFLDCSGTDINEEILEE  269 (699)
T ss_pred             -ccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCc-cccEEecCCcchhHHHHHH
Confidence             88888888888875554 5666776 68889999998765555421      1223356 8888888888877776666


Q ss_pred             hh
Q 021667          261 DF  262 (309)
Q Consensus       261 ~~  262 (309)
                      +.
T Consensus       270 ll  271 (699)
T KOG3665|consen  270 LL  271 (699)
T ss_pred             HH
Confidence            54

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.69  E-value=5.8e-09  Score=80.83  Aligned_cols=105  Identities=20%  Similarity=0.274  Sum_probs=23.6

Q ss_pred             CcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhC
Q 021667          136 LLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDAC  215 (309)
Q Consensus       136 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~  215 (309)
                      ++++|+|.++.|+.  ++.+...+.+|+.|+++++.+..        +..+. .+++|++|.+++|.|+.-+ ..+...+
T Consensus        20 ~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--------l~~l~-~L~~L~~L~L~~N~I~~i~-~~l~~~l   87 (175)
T PF14580_consen   20 KLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQITK--------LEGLP-GLPRLKTLDLSNNRISSIS-EGLDKNL   87 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----------TT-----TT--EEE--SS---S-C-HHHHHH-
T ss_pred             cccccccccccccc--ccchhhhhcCCCEEECCCCCCcc--------ccCcc-ChhhhhhcccCCCCCCccc-cchHHhC
Confidence            44555555554432  23333334455555555433321        11111 3455555555555554321 1122245


Q ss_pred             CCCCeeecCCCCCcC--chhHHHHHhHhccCceecCCCCCC
Q 021667          216 PHLESLDLRQCFNVN--LVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       216 ~~L~~L~l~~c~~~~--~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      |+|++|.++++....  +...+ ..++ +|+.|.+.||+++
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L-~~l~-~L~~L~L~~NPv~  126 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPL-SSLP-KLRVLSLEGNPVC  126 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGG-GG-T-T--EEE-TT-GGG
T ss_pred             CcCCEEECcCCcCCChHHhHHH-HcCC-CcceeeccCCccc
Confidence            556666555443211  12122 2345 5666666666653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.61  E-value=4e-09  Score=93.49  Aligned_cols=160  Identities=18%  Similarity=0.169  Sum_probs=92.5

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      +.++++|+|... +++.-.-.+ .-++..|+.|+|+.|.|..-....+ .+|++|+.|+++++.++.-    +++  .+.
T Consensus       268 l~kme~l~L~~N-~l~~vn~g~-lfgLt~L~~L~lS~NaI~rih~d~W-sftqkL~~LdLs~N~i~~l----~~~--sf~  338 (873)
T KOG4194|consen  268 LEKMEHLNLETN-RLQAVNEGW-LFGLTSLEQLDLSYNAIQRIHIDSW-SFTQKLKELDLSSNRITRL----DEG--SFR  338 (873)
T ss_pred             ecccceeecccc-hhhhhhccc-ccccchhhhhccchhhhheeecchh-hhcccceeEeccccccccC----Chh--HHH
Confidence            556666666532 332211111 2246677777777774432222222 3478888888887554421    221  222


Q ss_pred             hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCC---cCchhHHHHHhHhccCceecCCCCCCchhhhhhhhh
Q 021667          188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFN---VNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQD  264 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~---~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~  264 (309)
                       .+..|++|+|+.|.++.-.-.. +.++.+|+.|+|+.+..   ++|.+......+ .|++|++.||++....-.+|.  
T Consensus       339 -~L~~Le~LnLs~Nsi~~l~e~a-f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~-~LrkL~l~gNqlk~I~krAfs--  413 (873)
T KOG4194|consen  339 -VLSQLEELNLSHNSIDHLAEGA-FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLP-SLRKLRLTGNQLKSIPKRAFS--  413 (873)
T ss_pred             -HHHHhhhhcccccchHHHHhhH-HHHhhhhhhhcCcCCeEEEEEecchhhhccch-hhhheeecCceeeecchhhhc--
Confidence             4556778888887666432222 22567788888877643   334444555567 888888888887666666665  


Q ss_pred             hccCCcCCCCCCCCccccCC
Q 021667          265 FCWSSVEDYPSGISDIELVS  284 (309)
Q Consensus       265 ~c~~~~~l~~~~~s~~~~~~  284 (309)
                         +.+.||++|+.+-...|
T Consensus       414 ---gl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  414 ---GLEALEHLDLGDNAIAS  430 (873)
T ss_pred             ---cCcccceecCCCCccee
Confidence               66677777776555443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.55  E-value=4e-08  Score=76.19  Aligned_cols=138  Identities=22%  Similarity=0.243  Sum_probs=51.8

Q ss_pred             HHHHHHHhc--CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCC
Q 021667           99 ELLQYIANR--SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPK  176 (309)
Q Consensus        99 ~~l~~l~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~  176 (309)
                      ..++.+.+.  +.+++.|+|.++ .++.  +..+...+.+|+.|+|++|.+..  +..+ ..+++|+.|.++++.+... 
T Consensus         7 ~~i~~~~~~~n~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l-~~L~~L~~L~L~~N~I~~i-   79 (175)
T PF14580_consen    7 NMIEQIAQYNNPVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNNQITK--LEGL-PGLPRLKTLDLSNNRISSI-   79 (175)
T ss_dssp             --------------------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S--
T ss_pred             ccccccccccccccccccccccc-cccc--ccchhhhhcCCCEEECCCCCCcc--ccCc-cChhhhhhcccCCCCCCcc-
Confidence            344444332  557899999965 4443  23344457899999999997764  3332 3478999999997554311 


Q ss_pred             cccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc---hhHHHHHhHhccCceecCC
Q 021667          177 IECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL---VGKLGKICAERIRDLRHPN  250 (309)
Q Consensus       177 ~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~---~~~l~~~~~~~L~~L~l~~  250 (309)
                         .   ..+...+|+|++|.+++|.|.+-.-..-+..+|+|+.|++.+++....   ...+...+| +|+.|+-..
T Consensus        80 ---~---~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP-~Lk~LD~~~  149 (175)
T PF14580_consen   80 ---S---EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLP-SLKVLDGQD  149 (175)
T ss_dssp             ---C---HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-T-T-SEETTEE
T ss_pred             ---c---cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcC-hhheeCCEE
Confidence               1   234347899999999999887533223344799999999999886654   336667788 999887644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.45  E-value=7.3e-07  Score=83.77  Aligned_cols=166  Identities=17%  Similarity=0.220  Sum_probs=111.2

Q ss_pred             HHHHHHHHHh-ccCCCceEEeccc--cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCC
Q 021667           72 LEKMCRHAVD-RSNGQLLSINIEY--FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLS  148 (309)
Q Consensus        72 ~~~~~~~~~~-~~~~~l~~l~l~~--~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  148 (309)
                      +..+++..+. .+..+|++|++..  .+...-...++..+|.|++|.+.+. .+....+..+...+|+|..||+++++++
T Consensus       108 i~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  108 IISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             HHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCcc
Confidence            3445544443 3456889999854  3444445778888999999999965 5555558889999999999999999887


Q ss_pred             HHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChH-HHHHHHH---hCCCCCeeec
Q 021667          149 QEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNV-GLQAILD---ACPHLESLDL  223 (309)
Q Consensus       149 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~-~l~~l~~---~~~~L~~L~l  223 (309)
                      +-  ..+ .++++|+.|.+.+..+.     ....+..+. ++++|+.|+++.. ...+. .+...++   .+|+|+.||.
T Consensus       187 nl--~GI-S~LknLq~L~mrnLe~e-----~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDc  257 (699)
T KOG3665|consen  187 NL--SGI-SRLKNLQVLSMRNLEFE-----SYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDC  257 (699)
T ss_pred             Cc--HHH-hccccHHHHhccCCCCC-----chhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEec
Confidence            63  333 44889999988864443     245566777 8999999999987 33332 3333332   2788999988


Q ss_pred             CCCCCcCc-hhHHHHHhHhccCceec
Q 021667          224 RQCFNVNL-VGKLGKICAERIRDLRH  248 (309)
Q Consensus       224 ~~c~~~~~-~~~l~~~~~~~L~~L~l  248 (309)
                      ++.....+ .+.+...-| +|+.+..
T Consensus       258 SgTdi~~~~le~ll~sH~-~L~~i~~  282 (699)
T KOG3665|consen  258 SGTDINEEILEELLNSHP-NLQQIAA  282 (699)
T ss_pred             CCcchhHHHHHHHHHhCc-cHhhhhh
Confidence            86443333 333433333 5554443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.43  E-value=8.3e-06  Score=66.30  Aligned_cols=94  Identities=26%  Similarity=0.182  Sum_probs=41.6

Q ss_pred             CCcCEEEecCCCC---CHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHH
Q 021667          135 PLLEELELSYCSL---SQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAI  211 (309)
Q Consensus       135 ~~L~~L~L~~~~~---~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l  211 (309)
                      |.|+......|.+   +........++-.+|+.+.+..+++....+  ...+..-...+++|+.|+|..|.++..+-..+
T Consensus       157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv--~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGV--TMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchh--HHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            5555555555522   222222222222455666555444432211  11111112256666666666665554443322


Q ss_pred             H---HhCCCCCeeecCCCCCcC
Q 021667          212 L---DACPHLESLDLRQCFNVN  230 (309)
Q Consensus       212 ~---~~~~~L~~L~l~~c~~~~  230 (309)
                      .   ..++.|++|.+.+|-..+
T Consensus       235 a~al~~W~~lrEL~lnDClls~  256 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSN  256 (388)
T ss_pred             HHHhcccchhhhccccchhhcc
Confidence            2   234456666666665444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.30  E-value=1.1e-05  Score=65.51  Aligned_cols=197  Identities=17%  Similarity=0.130  Sum_probs=122.5

Q ss_pred             CceeecCCCCCCcccchhHHHHHHHHHhccCCCceEEecccc----CChHH---HH---HHHhcCCCccEEEeCCCCCCC
Q 021667           54 WRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYF----GTDEL---LQ---YIANRSRNLRNLRLVSCYNIS  123 (309)
Q Consensus        54 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~----~~~~~---l~---~l~~~~~~L~~L~l~~~~~~~  123 (309)
                      ...+++++..   ........++.....  ..+++..+++..    ..+..   +.   ...-.||+|+.++|+.. .++
T Consensus        32 ~~evdLSGNt---igtEA~e~l~~~ia~--~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg  105 (388)
T COG5238          32 LVEVDLSGNT---IGTEAMEELCNVIAN--VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFG  105 (388)
T ss_pred             eeEEeccCCc---ccHHHHHHHHHHHhh--hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccC
Confidence            3567777654   444455555554433  456666666542    22222   11   22224999999999854 333


Q ss_pred             ---HHHHHHHHhcCCCcCEEEecCCCCCHHHHH-------HH-----HhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667          124 ---DQGFCEAIKGFPLLEELELSYCSLSQEALE-------AV-----GSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE  188 (309)
Q Consensus       124 ---~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-------~l-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  188 (309)
                         .+.+..++.+...|++|.|++|++....-.       .+     +..-|.|++...+.+.+...   ......+..+
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRleng---s~~~~a~~l~  182 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENG---SKELSAALLE  182 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccC---cHHHHHHHHH
Confidence               445666777889999999999955432111       11     23458899998876555422   1222333443


Q ss_pred             cCCCCcEEEecCCccChHHHHHHH----HhCCCCCeeecCCCCCcCch-hHHH---HHhHhccCceecCCCCCCchhhhh
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAIL----DACPHLESLDLRQCFNVNLV-GKLG---KICAERIRDLRHPNDSTHDYEFGA  260 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~----~~~~~L~~L~l~~c~~~~~~-~~l~---~~~~~~L~~L~l~~~~~~d~~~~~  260 (309)
                      .-.+|+.+.+..|.|..+|+..++    ..|++|+.|+|.++...... ..++   ..++ .|+.|++..|-++..|...
T Consensus       183 sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G~~~  261 (388)
T COG5238         183 SHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEGVKS  261 (388)
T ss_pred             hhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhccccHHH
Confidence            457999999999999988876654    24889999999987654431 1222   2345 7899999999876665544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.29  E-value=7.6e-07  Score=79.40  Aligned_cols=162  Identities=16%  Similarity=0.079  Sum_probs=87.7

Q ss_pred             CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667           85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR  163 (309)
Q Consensus        85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  163 (309)
                      +..+.|++++ .+.+..... ...+++|+.+++... .++  .++.+.....+|++|+|.+|.|+...-+.+. ..|.|+
T Consensus        78 ~~t~~LdlsnNkl~~id~~~-f~nl~nLq~v~l~~N-~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~-~l~alr  152 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEF-FYNLPNLQEVNLNKN-ELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELS-ALPALR  152 (873)
T ss_pred             cceeeeeccccccccCcHHH-HhcCCcceeeeeccc-hhh--hcccccccccceeEEeeeccccccccHHHHH-hHhhhh
Confidence            3455677654 233323222 234788888888743 332  2333344446788888888755544333332 356677


Q ss_pred             EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhcc
Q 021667          164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERI  243 (309)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L  243 (309)
                      +|+++.+.+.....       .-.+.-+++++|+|++|.|++-+...+. +..+|..|.|+.+...+-....+.+.+ +|
T Consensus       153 slDLSrN~is~i~~-------~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~-~L  223 (873)
T KOG4194|consen  153 SLDLSRNLISEIPK-------PSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLP-KL  223 (873)
T ss_pred             hhhhhhchhhcccC-------CCCCCCCCceEEeecccccccccccccc-ccchheeeecccCcccccCHHHhhhcc-hh
Confidence            77776533221100       0011334677777777777765555443 344666677766655554444455566 77


Q ss_pred             CceecCCCCCCchhhhh
Q 021667          244 RDLRHPNDSTHDYEFGA  260 (309)
Q Consensus       244 ~~L~l~~~~~~d~~~~~  260 (309)
                      +.|+|..|.+.-.....
T Consensus       224 ~~LdLnrN~irive~lt  240 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLT  240 (873)
T ss_pred             hhhhccccceeeehhhh
Confidence            77777777654443333

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=5.1e-06  Score=68.33  Aligned_cols=109  Identities=20%  Similarity=0.188  Sum_probs=71.2

Q ss_pred             ccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCC-HHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhc
Q 021667          111 LRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLS-QEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAEN  189 (309)
Q Consensus       111 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~  189 (309)
                      ++-|.+.++.--+...+..+...+..+++|+|.+|.++ .+.+..+..++|.|+.|+++.+.+...       +..+...
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-------I~~lp~p  119 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-------IKSLPLP  119 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-------cccCccc
Confidence            33445555533334445566667788888888888665 345667778888888888875443211       1111114


Q ss_pred             CCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCC
Q 021667          190 MHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQC  226 (309)
Q Consensus       190 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c  226 (309)
                      ..+|+.|-|.|..++......++...|.+++|+++.+
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            4578888888887777777777777888888877765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.93  E-value=1.2e-05  Score=62.41  Aligned_cols=94  Identities=23%  Similarity=0.207  Sum_probs=62.8

Q ss_pred             CcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHh
Q 021667          136 LLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDA  214 (309)
Q Consensus       136 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~  214 (309)
                      .++.++-+++.|..+++..+.. ++.++.|.+.+|..     ..|..+..+..-.++|+.|+|++| .||+.|+..+. .
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~-l~~i~~l~l~~ck~-----~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~  174 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRD-LRSIKSLSLANCKY-----FDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-K  174 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhc-cchhhhheeccccc-----hhhHHHHHhcccccchheeeccCCCeechhHHHHHH-H
Confidence            3456666666777777776543 67777777765432     236666666666778888888887 78888877765 5


Q ss_pred             CCCCCeeecCCCCCcCchhHHH
Q 021667          215 CPHLESLDLRQCFNVNLVGKLG  236 (309)
Q Consensus       215 ~~~L~~L~l~~c~~~~~~~~l~  236 (309)
                      .++|+.|.+.+-+.+...+...
T Consensus       175 lknLr~L~l~~l~~v~~~e~~~  196 (221)
T KOG3864|consen  175 LKNLRRLHLYDLPYVANLELVQ  196 (221)
T ss_pred             hhhhHHHHhcCchhhhchHHHH
Confidence            7778888777766665544333

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.92  E-value=4.6e-06  Score=78.20  Aligned_cols=144  Identities=22%  Similarity=0.217  Sum_probs=90.8

Q ss_pred             cCChHHHHHHHhcCCCccEEEeCCC--CCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCC
Q 021667           95 FGTDELLQYIANRSRNLRNLRLVSC--YNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGH  172 (309)
Q Consensus        95 ~~~~~~l~~l~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  172 (309)
                      .++|..+..+- +.++||.|+|++.  ..+.+.    ...+++.|++|.|++|.++.-.  .-...|+.|++|...++.+
T Consensus       370 ~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas----~~~kle~LeeL~LSGNkL~~Lp--~tva~~~~L~tL~ahsN~l  442 (1081)
T KOG0618|consen  370 HLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPAS----KLRKLEELEELNLSGNKLTTLP--DTVANLGRLHTLRAHSNQL  442 (1081)
T ss_pred             cccccchhhhc-cccceeeeeecccccccCCHH----HHhchHHhHHHhcccchhhhhh--HHHHhhhhhHHHhhcCCce
Confidence            45666555554 4788888888855  222332    2346788888888888554322  2223477788887765322


Q ss_pred             CCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCC
Q 021667          173 RCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS  252 (309)
Q Consensus       173 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~  252 (309)
                      .        .+..++ .++.|+.++++.|.++.-.+.... ..|+|++|+++|+....-.......+. ++...++.-++
T Consensus       443 ~--------~fPe~~-~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~~l~~d~~~l~~l~-~l~~~~i~~~~  511 (1081)
T KOG0618|consen  443 L--------SFPELA-QLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNTRLVFDHKTLKVLK-SLSQMDITLNN  511 (1081)
T ss_pred             e--------echhhh-hcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCcccccchhhhHHhh-hhhheecccCC
Confidence            1        223555 788999999999988876665544 237899999999875443334445555 66666666664


Q ss_pred             CCch
Q 021667          253 THDY  256 (309)
Q Consensus       253 ~~d~  256 (309)
                      .+|.
T Consensus       512 ~~d~  515 (1081)
T KOG0618|consen  512 TPDG  515 (1081)
T ss_pred             CCcc
Confidence            4433

>PLN03210 Resistant to P

Probab=97.91  E-value=1.2e-05  Score=80.95  Aligned_cols=36  Identities=17%  Similarity=0.049  Sum_probs=16.9

Q ss_pred             CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCC
Q 021667          216 PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS  252 (309)
Q Consensus       216 ~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~  252 (309)
                      ++|+.|++++|........-...++ +|+.|+|++|.
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~  813 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCI  813 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCC-CCCEEECCCCC
Confidence            3455555555544443332333444 55555555543

syringae 6; Provisional

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.72  E-value=5.9e-05  Score=58.75  Aligned_cols=73  Identities=23%  Similarity=0.275  Sum_probs=54.5

Q ss_pred             cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCCCcEEEecc
Q 021667           95 FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLNN  169 (309)
Q Consensus        95 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~  169 (309)
                      .+...++..+. .++.++.|.+.+|..+.+.++..+....++|+.|+|++| .|++.++..+.+ +++|+.|.+.+
T Consensus       112 ~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l~~  185 (221)
T KOG3864|consen  112 SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHLYD  185 (221)
T ss_pred             hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHhcC
Confidence            44555566655 377888888888888888888877777788888888888 788887777655 67788887764

>PLN03210 Resistant to P

Probab=97.69  E-value=3.1e-05  Score=78.09  Aligned_cols=59  Identities=14%  Similarity=0.191  Sum_probs=38.2

Q ss_pred             CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCC
Q 021667          191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS  252 (309)
Q Consensus       191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~  252 (309)
                      ++|+.|+|.++.++.  +..-+..+++|+.|++++|+.++.+......++ +|+.|.+++|.
T Consensus       846 ~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~-~L~~L~l~~C~  904 (1153)
T PLN03210        846 TNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK-HLETVDFSDCG  904 (1153)
T ss_pred             cccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCccccccc-CCCeeecCCCc
Confidence            567777777775552  222234677888888888877776444444555 77777777775

syringae 6; Provisional

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=97.68  E-value=1.6e-05  Score=65.67  Aligned_cols=48  Identities=21%  Similarity=0.394  Sum_probs=40.9

Q ss_pred             CCCCCCCcHHHHHHHhcc-----CChhhhhhhhhhhcHHHHHhccCCCCCceee
Q 021667           10 SCDWTQLPADVTSTILSK-----IGAIDVLTSAQRVCSSWLRICHDPAMWRNID   58 (309)
Q Consensus        10 ~~~~~~LP~eiL~~If~~-----L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~   58 (309)
                      ...|+.||+|||..||..     ++.+++- ++|.|||.|+..+++|.+|+..-
T Consensus       104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~-~~s~vCr~F~~~~R~~~lwR~aC  156 (366)
T KOG2997|consen  104 LISISVLPDEVLMRIFRWVVSSLLDLRSLE-QLSLVCRGFYKCARDPELWRLAC  156 (366)
T ss_pred             hhhhhhCCHHHHHHHHHHHHhhhcchhhHH-HhHhhHHHHHHHHcChHHHHHHH
Confidence            345789999999999975     5678884 99999999999999999998543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=3.2e-05  Score=63.77  Aligned_cols=169  Identities=14%  Similarity=0.139  Sum_probs=83.9

Q ss_pred             CCCceEEecc-ccCCh-HHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCC
Q 021667           84 NGQLLSINIE-YFGTD-ELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPL  161 (309)
Q Consensus        84 ~~~l~~l~l~-~~~~~-~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  161 (309)
                      +.+++++++. +.+++ +.+..|.+++|.|+.|+|+ |+.+... +..+-....+|+.|-|.+..++...........|.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            4455566663 23333 4556666677777777776 3333211 11111123466777777766666666666666677


Q ss_pred             CcEEEeccCCCCCCCc----------------------ccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCC
Q 021667          162 LRSFKLNNRGHRCPKI----------------------ECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLE  219 (309)
Q Consensus       162 L~~L~l~~~~~~~~~~----------------------~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~  219 (309)
                      ++.|+++.+.+..-.+                      ........+.+.+||+..+.+..|.+.+..-..=.+..|.+.
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            7777666532211000                      001112233344555555555555444433333233344444


Q ss_pred             eeecCCCCCcCchhHH--HHHhHhccCceecCCCCCCch
Q 021667          220 SLDLRQCFNVNLVGKL--GKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       220 ~L~l~~c~~~~~~~~l--~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      .|.|+.. .++..+++  ...++ .|+.|+++.+++.|.
T Consensus       228 ~LnL~~~-~idswasvD~Ln~f~-~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  228 CLNLGAN-NIDSWASVDALNGFP-QLVDLRVSENPLSDP  264 (418)
T ss_pred             hhhhccc-ccccHHHHHHHcCCc-hhheeeccCCccccc
Confidence            5555432 23332222  23456 788888888877554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.54  E-value=7.7e-06  Score=51.91  Aligned_cols=38  Identities=24%  Similarity=0.230  Sum_probs=16.7

Q ss_pred             hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCC
Q 021667          214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS  252 (309)
Q Consensus       214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~  252 (309)
                      .+++|++|++++|....-.......++ +|++|++++|+
T Consensus        23 ~l~~L~~L~l~~N~l~~i~~~~f~~l~-~L~~L~l~~N~   60 (61)
T PF13855_consen   23 NLPNLETLDLSNNNLTSIPPDAFSNLP-NLRYLDLSNNN   60 (61)
T ss_dssp             TGTTESEEEETSSSESEEETTTTTTST-TESEEEETSSS
T ss_pred             CCCCCCEeEccCCccCccCHHHHcCCC-CCCEEeCcCCc
Confidence            345555555554333222222333444 55555555543

...

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.49  E-value=3.3e-05  Score=64.43  Aligned_cols=50  Identities=26%  Similarity=0.539  Sum_probs=44.6

Q ss_pred             CCCCCCCc----HHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeecC
Q 021667           10 SCDWTQLP----ADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMH   60 (309)
Q Consensus        10 ~~~~~~LP----~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~   60 (309)
                      .++++.||    +++-+.||+||+..++. ++-+|||+|+++..+|.+|+++-..
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc-~celv~k~W~r~l~dg~~WKkLie~  125 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLC-ACELVCKEWKRVLSDGMLWKKLIER  125 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhh-HHHHHHHHHHHHhccchHHHHHHHH
Confidence            36788999    99999999999999996 9999999999999999998876543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.49  E-value=2.5e-05  Score=63.75  Aligned_cols=98  Identities=18%  Similarity=0.212  Sum_probs=48.6

Q ss_pred             CcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhC
Q 021667          136 LLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDAC  215 (309)
Q Consensus       136 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~  215 (309)
                      +.+.|++.+|.++|.   .++..+|.|+.|.|+-+.+        ..+..+. .|++|++|.|..|.|.+-.-...+.++
T Consensus        20 ~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkI--------ssL~pl~-rCtrLkElYLRkN~I~sldEL~YLknl   87 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKI--------SSLAPLQ-RCTRLKELYLRKNCIESLDELEYLKNL   87 (388)
T ss_pred             HhhhhcccCCCccHH---HHHHhcccceeEEeecccc--------ccchhHH-HHHHHHHHHHHhcccccHHHHHHHhcC
Confidence            444455555555543   2234455555555552111        1122233 566666666666655554444455566


Q ss_pred             CCCCeeecCCCCCcCc-----hhHHHHHhHhccCce
Q 021667          216 PHLESLDLRQCFNVNL-----VGKLGKICAERIRDL  246 (309)
Q Consensus       216 ~~L~~L~l~~c~~~~~-----~~~l~~~~~~~L~~L  246 (309)
                      |+|+.|+|..++....     -..+....| +|++|
T Consensus        88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LP-nLkKL  122 (388)
T KOG2123|consen   88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLP-NLKKL  122 (388)
T ss_pred             chhhhHhhccCCcccccchhHHHHHHHHcc-cchhc
Confidence            6666666665554443     113334445 55554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.44  E-value=2.4e-05  Score=70.81  Aligned_cols=63  Identities=22%  Similarity=0.291  Sum_probs=42.8

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD  255 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d  255 (309)
                      .+++|+.|+|++|.|+.-.+.  ...+.+|+.|+++.+....-.+++ -..+ +|+.|.+.+|.++=
T Consensus       243 ~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~av-cKL~-kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLTVLPDAV-CKLT-KLTKLYANNNKLTF  305 (1255)
T ss_pred             hhhhhheeccCcCceeeeecc--HHHHhhhhhhccccchhccchHHH-hhhH-HHHHHHhccCcccc
Confidence            677888888888887753322  224667888888887655534343 3456 78888888887643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.44  E-value=2.1e-05  Score=71.24  Aligned_cols=42  Identities=14%  Similarity=0.090  Sum_probs=22.7

Q ss_pred             CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhh
Q 021667          215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEF  258 (309)
Q Consensus       215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~  258 (309)
                      +.+|..++++.+..-. ...-.-..+ +|+.|+|++|.++....
T Consensus       221 l~NL~dvDlS~N~Lp~-vPecly~l~-~LrrLNLS~N~iteL~~  262 (1255)
T KOG0444|consen  221 LHNLRDVDLSENNLPI-VPECLYKLR-NLRRLNLSGNKITELNM  262 (1255)
T ss_pred             hhhhhhccccccCCCc-chHHHhhhh-hhheeccCcCceeeeec
Confidence            3445555555433222 222223345 78888888888775543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.34  E-value=3e-05  Score=72.97  Aligned_cols=46  Identities=17%  Similarity=0.208  Sum_probs=26.3

Q ss_pred             hCCCCCeeecCCCCCcCchhHHHHHhH-hccCceecCCCCCCchhhhhh
Q 021667          214 ACPHLESLDLRQCFNVNLVGKLGKICA-ERIRDLRHPNDSTHDYEFGAD  261 (309)
Q Consensus       214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~-~~L~~L~l~~~~~~d~~~~~~  261 (309)
                      ..+.|+.+|++.+. ++.. .+....| ++|++|+++||.-.+.....+
T Consensus       450 ~l~qL~~lDlS~N~-L~~~-~l~~~~p~p~LkyLdlSGN~~l~~d~~~l  496 (1081)
T KOG0618|consen  450 QLPQLKVLDLSCNN-LSEV-TLPEALPSPNLKYLDLSGNTRLVFDHKTL  496 (1081)
T ss_pred             hcCcceEEecccch-hhhh-hhhhhCCCcccceeeccCCcccccchhhh
Confidence            46778888886543 4332 1222222 389999999887433333333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.32  E-value=0.00033  Score=58.12  Aligned_cols=39  Identities=23%  Similarity=0.252  Sum_probs=17.5

Q ss_pred             CCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCC
Q 021667          190 MHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFN  228 (309)
Q Consensus       190 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~  228 (309)
                      +-+|..|++++|+|..-.-..=+.++|-|+.|.+.+++.
T Consensus       373 LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  373 LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence            334555555555444221111122455555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.24  E-value=7.7e-05  Score=68.69  Aligned_cols=61  Identities=26%  Similarity=0.307  Sum_probs=41.8

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      -+|.|++|+|++|++++-.   .+..|++|++|||+.+..-. +..+..... +|..|++++|.++
T Consensus       185 ll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-~L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-KLQLLNLRNNALT  245 (1096)
T ss_pred             HHHHhhhhccchhhhhhhH---HHHhcccccccccccchhcc-ccccchhhh-hheeeeecccHHH
Confidence            4568899999999877543   45578899999998865443 233333333 4888888887764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.23  E-value=0.00013  Score=60.44  Aligned_cols=62  Identities=23%  Similarity=0.231  Sum_probs=36.6

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD  255 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d  255 (309)
                      -.|.++.|+++.|.+..-+  . +..+++|.+|+++++.... ...+..... ++++|+|++|.+.+
T Consensus       305 L~Pkir~L~lS~N~i~~v~--n-La~L~~L~~LDLS~N~Ls~-~~Gwh~KLG-NIKtL~La~N~iE~  366 (490)
T KOG1259|consen  305 LAPKLRRLILSQNRIRTVQ--N-LAELPQLQLLDLSGNLLAE-CVGWHLKLG-NIKTLKLAQNKIET  366 (490)
T ss_pred             hccceeEEeccccceeeeh--h-hhhcccceEeecccchhHh-hhhhHhhhc-CEeeeehhhhhHhh
Confidence            3456666666666554221  1 2246677777777654332 444555666 78888888877643

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=97.20  E-value=0.0001  Score=66.59  Aligned_cols=174  Identities=22%  Similarity=0.272  Sum_probs=107.9

Q ss_pred             CCCceEEecc-ccCChHHHHHHHhcC----CCccEEEeCCCCCCCHHHHHHHHh---cCCCcCEEEecCCCCCHHHHHHH
Q 021667           84 NGQLLSINIE-YFGTDELLQYIANRS----RNLRNLRLVSCYNISDQGFCEAIK---GFPLLEELELSYCSLSQEALEAV  155 (309)
Q Consensus        84 ~~~l~~l~l~-~~~~~~~l~~l~~~~----~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~l  155 (309)
                      .+.++.+++. +.+++.....+....    +.++.|.+..| .++..+...+..   ..+.|+.+++..|.+...+...+
T Consensus       114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l  192 (478)
T KOG4308|consen  114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL  192 (478)
T ss_pred             cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence            4456666663 355566666655543    33455666655 555544443333   35677777888776554444433


Q ss_pred             Hh-------cCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCC-CcEEEecCCccChHHHHHHHHhCC----CCCeeec
Q 021667          156 GS-------LCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHG-LRHLQLFGNELTNVGLQAILDACP----HLESLDL  223 (309)
Q Consensus       156 ~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~i~~~~l~~l~~~~~----~L~~L~l  223 (309)
                      .+       ...++++|++.+|..+..  . -..+.......++ ++.|++..|.+.|.++..+....+    .++.+++
T Consensus       193 ~~~l~~~~~~~~~le~L~L~~~~~t~~--~-c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l  269 (478)
T KOG4308|consen  193 SQALESAASPLSSLETLKLSRCGVTSS--S-CALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL  269 (478)
T ss_pred             hhhhhhhhcccccHHHHhhhhcCcChH--H-HHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence            32       234688888887655422  1 1111222224455 667888888888888877776644    4588888


Q ss_pred             CCCCCcCc----hhHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667          224 RQCFNVNL----VGKLGKICAERIRDLRHPNDSTHDYEFGADF  262 (309)
Q Consensus       224 ~~c~~~~~----~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~  262 (309)
                      +.|.....    .......++ +++.+.+..|++++++.....
T Consensus       270 ~~nsi~~~~~~~L~~~l~~~~-~l~~l~l~~n~l~~~~~~~~~  311 (478)
T KOG4308|consen  270 SRNSITEKGVRDLAEVLVSCR-QLEELSLSNNPLTDYGVELLL  311 (478)
T ss_pred             hcCCccccchHHHHHHHhhhH-HHHHhhcccCccccHHHHHHH
Confidence            88876654    446666778 899999999999888887755

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.00017  Score=59.05  Aligned_cols=102  Identities=28%  Similarity=0.401  Sum_probs=55.6

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      +.+.+.|++++| .++|..   +...+|.|+.|.|+-|.|+.  +..+ ..|.+|++|.|..+.+     ..-..+..+.
T Consensus        18 l~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvNkIss--L~pl-~rCtrLkElYLRkN~I-----~sldEL~YLk   85 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVNKISS--LAPL-QRCTRLKELYLRKNCI-----ESLDELEYLK   85 (388)
T ss_pred             HHHhhhhcccCC-CccHHH---HHHhcccceeEEeecccccc--chhH-HHHHHHHHHHHHhccc-----ccHHHHHHHh
Confidence            445666777666 555532   34566777777777776643  3333 2366777776663222     2233334444


Q ss_pred             hcCCCCcEEEecCCccC----hHHHHHHHHhCCCCCeee
Q 021667          188 ENMHGLRHLQLFGNELT----NVGLQAILDACPHLESLD  222 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~----~~~l~~l~~~~~~L~~L~  222 (309)
                       ++|+|+.|-|..|.-.    ..-=..+++.+|+|+.||
T Consensus        86 -nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   86 -NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             -cCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence             6777777777665211    112234455567777664

>PLN03150 hypothetical protein; Provisional

Probab=97.10  E-value=0.0011  Score=62.56  Aligned_cols=84  Identities=19%  Similarity=0.143  Sum_probs=38.3

Q ss_pred             cCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCC
Q 021667          137 LEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACP  216 (309)
Q Consensus       137 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~  216 (309)
                      ++.|+|+++.+.......+ ..+++|+.|+++++.+...      ....+. .+++|+.|+|++|.++...... +..++
T Consensus       420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~------iP~~~~-~l~~L~~LdLs~N~lsg~iP~~-l~~L~  490 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGN------IPPSLG-SITSLEVLDLSYNSFNGSIPES-LGQLT  490 (623)
T ss_pred             EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCc------CChHHh-CCCCCCEEECCCCCCCCCCchH-HhcCC
Confidence            4455555554432211122 2355666666655433211      111222 5566666666666554322222 22455


Q ss_pred             CCCeeecCCCCCc
Q 021667          217 HLESLDLRQCFNV  229 (309)
Q Consensus       217 ~L~~L~l~~c~~~  229 (309)
                      +|+.|+|++|...
T Consensus       491 ~L~~L~Ls~N~l~  503 (623)
T PLN03150        491 SLRILNLNGNSLS  503 (623)
T ss_pred             CCCEEECcCCccc
Confidence            6666666655433

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=97.09  E-value=0.0004  Score=60.14  Aligned_cols=38  Identities=21%  Similarity=0.653  Sum_probs=34.0

Q ss_pred             CCCCCCcHHHHHHHhccC-ChhhhhhhhhhhcHHHHHhcc
Q 021667           11 CDWTQLPADVTSTILSKI-GAIDVLTSAQRVCSSWLRICH   49 (309)
Q Consensus        11 ~~~~~LP~eiL~~If~~L-~~~d~~~~~~~Vcr~W~~~~~   49 (309)
                      ..|++||+|+|..|...| ...|++ +.+.||+.||..+.
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~-~~~~vC~sWr~a~~   40 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELK-RFRSICRSWRSSVS   40 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHH-HHHhhhhhHHHhcc
Confidence            469999999999999999 566775 99999999999876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.07  E-value=8.6e-05  Score=60.11  Aligned_cols=35  Identities=34%  Similarity=0.511  Sum_probs=16.7

Q ss_pred             CCCcCEEEecCC--CCCHHHHHHHHhcCCCCcEEEecc
Q 021667          134 FPLLEELELSYC--SLSQEALEAVGSLCPLLRSFKLNN  169 (309)
Q Consensus       134 ~~~L~~L~L~~~--~~~~~~~~~l~~~~~~L~~L~l~~  169 (309)
                      +|+|+.|.++.|  ++. .++..++..+|+|++|++++
T Consensus        64 Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~  100 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSG  100 (260)
T ss_pred             cchhhhhcccCCccccc-ccceehhhhCCceeEEeecC
Confidence            455555555555  221 22444444455555555554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.07  E-value=1.5e-05  Score=60.50  Aligned_cols=38  Identities=24%  Similarity=0.355  Sum_probs=23.2

Q ss_pred             hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      .+.+|+.|.++++..++-...+.. .. +|++|.+.||.+
T Consensus       148 ~lt~lqil~lrdndll~lpkeig~-lt-~lrelhiqgnrl  185 (264)
T KOG0617|consen  148 KLTNLQILSLRDNDLLSLPKEIGD-LT-RLRELHIQGNRL  185 (264)
T ss_pred             hhcceeEEeeccCchhhCcHHHHH-HH-HHHHHhccccee
Confidence            345677777777666664434332 33 577777777764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.02  E-value=9.8e-05  Score=46.75  Aligned_cols=60  Identities=18%  Similarity=0.043  Sum_probs=45.5

Q ss_pred             CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccc
Q 021667          216 PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIE  281 (309)
Q Consensus       216 ~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~  281 (309)
                      |+|++|++++|....-.......++ +|++|++++|.++...-.++.     ..+.+..++++++.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~-~L~~L~l~~N~l~~i~~~~f~-----~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLP-NLETLDLSNNNLTSIPPDAFS-----NLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGT-TESEEEETSSSESEEETTTTT-----TSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCC-CCCEeEccCCccCccCHHHHc-----CCCCCCEEeCcCCc
Confidence            6789999998854333445666788 999999999999877666775     67778888887653

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.85  E-value=0.00023  Score=64.36  Aligned_cols=167  Identities=22%  Similarity=0.188  Sum_probs=86.5

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcC----CCcCEEEecCCCCCHHHHHHHHhc---CCCCcEEEeccCCCCCCCcccc
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGF----PLLEELELSYCSLSQEALEAVGSL---CPLLRSFKLNNRGHRCPKIECD  180 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~  180 (309)
                      .+.|..|+++++ .+++.+...+...+    +.|+.|.+..|.+++.+...++..   ++.++.+++..+.+...  ...
T Consensus       114 ~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~--g~~  190 (478)
T KOG4308|consen  114 LPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIEL--GLL  190 (478)
T ss_pred             cccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchh--hhH
Confidence            667777777754 55566666555544    345566666676665555444332   45566666654443211  001


Q ss_pred             hhHHHHHh---cCCCCcEEEecCCccChHHHHHHHHhCCC----CCeeecCCCCCcCc-hhHHHHHhH---hccCceecC
Q 021667          181 DDAKAIAE---NMHGLRHLQLFGNELTNVGLQAILDACPH----LESLDLRQCFNVNL-VGKLGKICA---ERIRDLRHP  249 (309)
Q Consensus       181 ~~~~~l~~---~~~~L~~L~l~~~~i~~~~l~~l~~~~~~----L~~L~l~~c~~~~~-~~~l~~~~~---~~L~~L~l~  249 (309)
                      .....+..   ...++++|++.+|.++......+....+.    +..|++..+..-+. ...+....+   .++++++++
T Consensus       191 ~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~  270 (478)
T KOG4308|consen  191 VLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS  270 (478)
T ss_pred             HHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence            11111121   34567777787777776665555444332    44466654433322 222222222   256778888


Q ss_pred             CCCCCchhhhhhhhhhccCCcCCCCCCCC
Q 021667          250 NDSTHDYEFGADFQDFCWSSVEDYPSGIS  278 (309)
Q Consensus       250 ~~~~~d~~~~~~~~~~c~~~~~l~~~~~s  278 (309)
                      .|++++.|....+ +.-..++.++++.++
T Consensus       271 ~nsi~~~~~~~L~-~~l~~~~~l~~l~l~  298 (478)
T KOG4308|consen  271 RNSITEKGVRDLA-EVLVSCRQLEELSLS  298 (478)
T ss_pred             cCCccccchHHHH-HHHhhhHHHHHhhcc
Confidence            8887777766655 222233344444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.79  E-value=0.0012  Score=38.59  Aligned_cols=34  Identities=35%  Similarity=0.509  Sum_probs=16.1

Q ss_pred             CCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667          192 GLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF  227 (309)
Q Consensus       192 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  227 (309)
                      +|++|++++|.|++  +...+..+++|+.|++++|.
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            45556666655553  22223355555555555543

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.78  E-value=0.00029  Score=60.45  Aligned_cols=18  Identities=33%  Similarity=0.562  Sum_probs=14.3

Q ss_pred             hcCCCCcEEEecCCccCh
Q 021667          188 ENMHGLRHLQLFGNELTN  205 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~  205 (309)
                      +.+|+|+.|+|++|.++.
T Consensus       271 ~~L~~L~~lnlsnN~i~~  288 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITR  288 (498)
T ss_pred             hhcccceEeccCCCccch
Confidence            367899999999987663

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.76  E-value=0.00057  Score=55.47  Aligned_cols=106  Identities=25%  Similarity=0.322  Sum_probs=60.9

Q ss_pred             CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHH
Q 021667          134 FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILD  213 (309)
Q Consensus       134 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~  213 (309)
                      +..|+.|.+.++.++.  +..+ ..+|+|+.|.++.+.+.     ...++..++..+|+|++|++++|.|.+-.-..=++
T Consensus        42 ~~~le~ls~~n~gltt--~~~~-P~Lp~LkkL~lsdn~~~-----~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~  113 (260)
T KOG2739|consen   42 FVELELLSVINVGLTT--LTNF-PKLPKLKKLELSDNYRR-----VSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLK  113 (260)
T ss_pred             ccchhhhhhhccceee--cccC-CCcchhhhhcccCCccc-----ccccceehhhhCCceeEEeecCCccccccccchhh
Confidence            4455555555543322  1111 23678888888754222     24455566667799999999999777422222233


Q ss_pred             hCCCCCeeecCCCCCcC--c-hhHHHHHhHhccCceec
Q 021667          214 ACPHLESLDLRQCFNVN--L-VGKLGKICAERIRDLRH  248 (309)
Q Consensus       214 ~~~~L~~L~l~~c~~~~--~-~~~l~~~~~~~L~~L~l  248 (309)
                      ..++|..|++..|.-..  + ...++...+ +|+.|+-
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~-~L~~LD~  150 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLP-SLKYLDG  150 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhh-hhccccc
Confidence            56778888888876433  2 234444455 6665543

>PLN03150 hypothetical protein; Provisional

Probab=96.76  E-value=0.0032  Score=59.52  Aligned_cols=107  Identities=18%  Similarity=0.163  Sum_probs=63.5

Q ss_pred             ccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcC
Q 021667          111 LRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENM  190 (309)
Q Consensus       111 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~  190 (309)
                      +..|+|.++ .++. .+..-+..+++|+.|+|++|.+... +......+++|+.|+++++.+...      ....+. .+
T Consensus       420 v~~L~L~~n-~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~------iP~~l~-~L  489 (623)
T PLN03150        420 IDGLGLDNQ-GLRG-FIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGS------IPESLG-QL  489 (623)
T ss_pred             EEEEECCCC-Cccc-cCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCC------CchHHh-cC
Confidence            455555543 2221 1223345688999999999866533 222235588899999987655422      122344 78


Q ss_pred             CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667          191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF  227 (309)
Q Consensus       191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  227 (309)
                      ++|+.|+|++|.++...-..+.....++..+++.++.
T Consensus       490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence            8999999999876643333333223456667666554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.72  E-value=0.0023  Score=61.17  Aligned_cols=15  Identities=33%  Similarity=0.499  Sum_probs=9.8

Q ss_pred             CCCCcEEEecCCccC
Q 021667          190 MHGLRHLQLFGNELT  204 (309)
Q Consensus       190 ~~~L~~L~l~~~~i~  204 (309)
                      .++|+.|++++|.++
T Consensus       301 p~~L~~LdLS~N~L~  315 (788)
T PRK15387        301 PPGLQELSVSDNQLA  315 (788)
T ss_pred             ccccceeECCCCccc
Confidence            356777777777554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.70  E-value=0.00031  Score=64.85  Aligned_cols=108  Identities=22%  Similarity=0.198  Sum_probs=70.9

Q ss_pred             HHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh-cCCCCcEEEecCCccChHH
Q 021667          129 EAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE-NMHGLRHLQLFGNELTNVG  207 (309)
Q Consensus       129 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~i~~~~  207 (309)
                      ..++-+|.|++|+|++|++++..   ..+.||+|++|+++++.+.-.        ..+.. .|. |..|.+++|.++.  
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~v--------p~l~~~gc~-L~~L~lrnN~l~t--  246 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHV--------PQLSMVGCK-LQLLNLRNNALTT--  246 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccc--------cccchhhhh-heeeeecccHHHh--
Confidence            34455688999999999887643   345699999999987554321        11111 333 8899999986652  


Q ss_pred             HHHHHHhCCCCCeeecCCCCCcCchh--HHHHHhHhccCceecCCCCC
Q 021667          208 LQAILDACPHLESLDLRQCFNVNLVG--KLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       208 l~~l~~~~~~L~~L~l~~c~~~~~~~--~l~~~~~~~L~~L~l~~~~~  253 (309)
                      +.-+ +++.+|+.||++++-... ..  ....... .|+.|.|.||++
T Consensus       247 L~gi-e~LksL~~LDlsyNll~~-hseL~pLwsLs-~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  247 LRGI-ENLKSLYGLDLSYNLLSE-HSELEPLWSLS-SLIVLWLEGNPL  291 (1096)
T ss_pred             hhhH-HhhhhhhccchhHhhhhc-chhhhHHHHHH-HHHHHhhcCCcc
Confidence            3322 257789999998754333 22  2223345 789999999986

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.67  E-value=0.002  Score=32.78  Aligned_cols=23  Identities=43%  Similarity=0.612  Sum_probs=14.9

Q ss_pred             CCCCcEEEecCC-ccChHHHHHHH
Q 021667          190 MHGLRHLQLFGN-ELTNVGLQAIL  212 (309)
Q Consensus       190 ~~~L~~L~l~~~-~i~~~~l~~l~  212 (309)
                      ||+|++|+|++| .++|.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            456666666666 66666666654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.62  E-value=0.0027  Score=32.34  Aligned_cols=24  Identities=42%  Similarity=0.684  Sum_probs=15.9

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAI  131 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~  131 (309)
                      |++|++|+|++|..+++.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            466777777777667776666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.61  E-value=0.0026  Score=37.12  Aligned_cols=37  Identities=22%  Similarity=0.152  Sum_probs=17.6

Q ss_pred             CCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667          217 HLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD  255 (309)
Q Consensus       217 ~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d  255 (309)
                      +|++|+++++.. +++......++ +|+.|++++|++++
T Consensus         2 ~L~~L~l~~N~i-~~l~~~l~~l~-~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQI-TDLPPELSNLP-NLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS--SSHGGHGTTCT-TSSEEEETSSCCSB
T ss_pred             cceEEEccCCCC-cccCchHhCCC-CCCEEEecCCCCCC
Confidence            455555555432 23333334455 55555555555554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.37  E-value=0.004  Score=45.82  Aligned_cols=65  Identities=23%  Similarity=0.251  Sum_probs=35.4

Q ss_pred             HHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          185 AIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       185 ~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      .+...+|.++.|++.+|.+++--..  +..+|.|+.|+++.++.......++. .. ++-.|+..++..
T Consensus        71 kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~~~p~vi~~-L~-~l~~Lds~~na~  135 (177)
T KOG4579|consen   71 KFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPLNAEPRVIAP-LI-KLDMLDSPENAR  135 (177)
T ss_pred             HHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCccccchHHHHH-HH-hHHHhcCCCCcc
Confidence            3333555666666666666543333  33566666666666655544433333 44 555666666554

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.17  E-value=0.0056  Score=30.41  Aligned_cols=23  Identities=30%  Similarity=0.413  Sum_probs=17.1

Q ss_pred             CCCCcEEEecCCccChHHHHHHH
Q 021667          190 MHGLRHLQLFGNELTNVGLQAIL  212 (309)
Q Consensus       190 ~~~L~~L~l~~~~i~~~~l~~l~  212 (309)
                      +++|++|+|++|.|+++++..+.
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            47889999999999998888775

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.05  E-value=0.0046  Score=59.21  Aligned_cols=64  Identities=17%  Similarity=0.080  Sum_probs=37.0

Q ss_pred             CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhh
Q 021667          191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGAD  261 (309)
Q Consensus       191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~  261 (309)
                      ++|+.|++++|.++.  +..   ...+|+.|+++++...+ +..-...++ +|+.|+|++|++++.....+
T Consensus       402 s~L~~LdLS~N~Lss--IP~---l~~~L~~L~Ls~NqLt~-LP~sl~~L~-~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        402 SELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQLTR-LPESLIHLS-SETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cCCCEEEccCCcCCC--CCc---chhhhhhhhhccCcccc-cChHHhhcc-CCCeEECCCCCCCchHHHHH
Confidence            456666666665542  111   12346666666655332 222234566 88999999999887655544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.01  E-value=0.0037  Score=48.98  Aligned_cols=90  Identities=22%  Similarity=0.309  Sum_probs=51.8

Q ss_pred             HhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHH
Q 021667          131 IKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQA  210 (309)
Q Consensus       131 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~  210 (309)
                      +.++++|..|.|..|.|+.- -..+....|+|+.|.+.++.+     ..-..+..++ .||+|++|.+-+|.+++..-..
T Consensus        60 lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi-----~~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~YR  132 (233)
T KOG1644|consen   60 LPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSI-----QELGDLDPLA-SCPKLEYLTLLGNPVEHKKNYR  132 (233)
T ss_pred             CCCccccceEEecCCcceee-ccchhhhccccceEEecCcch-----hhhhhcchhc-cCCccceeeecCCchhcccCce
Confidence            34567777788877755432 122344567777777775332     2233344445 7777888888777666543211


Q ss_pred             --HHHhCCCCCeeecCCCC
Q 021667          211 --ILDACPHLESLDLRQCF  227 (309)
Q Consensus       211 --l~~~~~~L~~L~l~~c~  227 (309)
                        ++-..|+|+.||.....
T Consensus       133 ~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  133 LYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eEEEEecCcceEeehhhhh
Confidence              12236777777776543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=95.98  E-value=0.0054  Score=53.13  Aligned_cols=115  Identities=17%  Similarity=0.151  Sum_probs=67.7

Q ss_pred             HHHhcCCCcCEEEecCC---CCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccCh
Q 021667          129 EAIKGFPLLEELELSYC---SLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTN  205 (309)
Q Consensus       129 ~~~~~~~~L~~L~L~~~---~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~  205 (309)
                      ..+..+++|..|+|++|   +++.+.     .....|+.|+++.+.|.+.    .....    ....|+.+-.+++++..
T Consensus       429 ~~l~~l~kLt~L~L~NN~Ln~LP~e~-----~~lv~Lq~LnlS~NrFr~l----P~~~y----~lq~lEtllas~nqi~~  495 (565)
T KOG0472|consen  429 LELSQLQKLTFLDLSNNLLNDLPEEM-----GSLVRLQTLNLSFNRFRML----PECLY----ELQTLETLLASNNQIGS  495 (565)
T ss_pred             HHHHhhhcceeeecccchhhhcchhh-----hhhhhhheecccccccccc----hHHHh----hHHHHHHHHhccccccc
Confidence            34556788888888887   444332     2244588888887655432    11111    22234445455555442


Q ss_pred             HHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhh
Q 021667          206 VGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFG  259 (309)
Q Consensus       206 ~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~  259 (309)
                      -....+ .++.+|..|++..+.... +.....++. +|++|.+.||++.-...+
T Consensus       496 vd~~~l-~nm~nL~tLDL~nNdlq~-IPp~Lgnmt-nL~hLeL~gNpfr~Pr~~  546 (565)
T KOG0472|consen  496 VDPSGL-KNMRNLTTLDLQNNDLQQ-IPPILGNMT-NLRHLELDGNPFRQPRHQ  546 (565)
T ss_pred             cChHHh-hhhhhcceeccCCCchhh-CChhhcccc-ceeEEEecCCccCCCHHH
Confidence            222222 256778889997655433 556667778 899999999987643333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.76  E-value=0.037  Score=53.29  Aligned_cols=12  Identities=17%  Similarity=0.224  Sum_probs=5.8

Q ss_pred             ccCceecCCCCC
Q 021667          242 RIRDLRHPNDST  253 (309)
Q Consensus       242 ~L~~L~l~~~~~  253 (309)
                      +|+.|+|++|.+
T Consensus       368 ~L~~LdLs~N~L  379 (754)
T PRK15370        368 TITTLDVSRNAL  379 (754)
T ss_pred             CcCEEECCCCcC
Confidence            445555554444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.50  E-value=0.00017  Score=54.92  Aligned_cols=109  Identities=21%  Similarity=0.261  Sum_probs=56.2

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      +++|+.|++.-. ++.  .+..=+..+|.|+.|+|.++.+....+..-...+..|+.|.++.+++.-       ....+.
T Consensus        78 l~klr~lnvgmn-rl~--~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~-------lp~dvg  147 (264)
T KOG0617|consen   78 LPKLRILNVGMN-RLN--ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-------LPPDVG  147 (264)
T ss_pred             chhhhheecchh-hhh--cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc-------CChhhh
Confidence            566666665521 111  0111123456677777766655443332222223445555565443321       112233


Q ss_pred             hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCc
Q 021667          188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNV  229 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~  229 (309)
                       .+++|+.|.++.|.+-  .+..-+..+.+|++|++.++...
T Consensus       148 -~lt~lqil~lrdndll--~lpkeig~lt~lrelhiqgnrl~  186 (264)
T KOG0617|consen  148 -KLTNLQILSLRDNDLL--SLPKEIGDLTRLRELHIQGNRLT  186 (264)
T ss_pred             -hhcceeEEeeccCchh--hCcHHHHHHHHHHHHhcccceee
Confidence             7889999999988332  11222224557999999887643

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=95.26  E-value=0.016  Score=28.74  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=13.1

Q ss_pred             CCCcCEEEecCCCCCHHHHHHHH
Q 021667          134 FPLLEELELSYCSLSQEALEAVG  156 (309)
Q Consensus       134 ~~~L~~L~L~~~~~~~~~~~~l~  156 (309)
                      +++|++|+|++|.+++.++..++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            35667777777777666666554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.25  E-value=0.0065  Score=47.65  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=14.7

Q ss_pred             CCCcCEEEecCCCCCHH-HHHHHHhcCCCCcEEEecc
Q 021667          134 FPLLEELELSYCSLSQE-ALEAVGSLCPLLRSFKLNN  169 (309)
Q Consensus       134 ~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~~  169 (309)
                      +|+|+.|.|.+|++..- .+..++ .||+|+.|.+-+
T Consensus        87 ~p~l~~L~LtnNsi~~l~dl~pLa-~~p~L~~Ltll~  122 (233)
T KOG1644|consen   87 LPNLKTLILTNNSIQELGDLDPLA-SCPKLEYLTLLG  122 (233)
T ss_pred             ccccceEEecCcchhhhhhcchhc-cCCccceeeecC
Confidence            34555555555533211 122222 255555555543

>PF13013 F-box-like_2: F-box-like domain

Probab=95.10  E-value=0.032  Score=39.48  Aligned_cols=30  Identities=20%  Similarity=0.312  Sum_probs=26.7

Q ss_pred             CCCCCcHHHHHHHhccCChhhhhhhhhhhcH
Q 021667           12 DWTQLPADVTSTILSKIGAIDVLTSAQRVCS   42 (309)
Q Consensus        12 ~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr   42 (309)
                      .+.+||+|++..||.+....+.+ .+...|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~-~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILL-ALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHH-HHHHHHH
Confidence            48899999999999999999985 7777777

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=95.01  E-value=0.041  Score=28.48  Aligned_cols=25  Identities=36%  Similarity=0.502  Sum_probs=21.5

Q ss_pred             CCCcEEEecCCccChHHHHHHHHhC
Q 021667          191 HGLRHLQLFGNELTNVGLQAILDAC  215 (309)
Q Consensus       191 ~~L~~L~l~~~~i~~~~l~~l~~~~  215 (309)
                      ++|++|+|++|.++++|...+++.+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~L   26 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEAL   26 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHHh
Confidence            6799999999999999998887654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=94.47  E-value=0.03  Score=54.83  Aligned_cols=42  Identities=26%  Similarity=0.191  Sum_probs=25.9

Q ss_pred             HhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCC
Q 021667          105 ANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLS  148 (309)
Q Consensus       105 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  148 (309)
                      ...+|.|..|+|+++...+  .++..+..+-+|+.|+|+++.+.
T Consensus       567 f~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~  608 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGIS  608 (889)
T ss_pred             HhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCcc
Confidence            4557888888888654333  23444455667777777776553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=94.28  E-value=0.034  Score=49.54  Aligned_cols=61  Identities=23%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      .+.++..+.+.++.+.+.  ......++.|+.|+++++.... ... ..... +++.|+++++.++
T Consensus       230 ~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~-~l~~L~~s~n~~~  290 (394)
T COG4886         230 NLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNNQISS-ISS-LGSLT-NLRELDLSGNSLS  290 (394)
T ss_pred             hcccccccccCCceeeec--cchhccccccceeccccccccc-ccc-ccccC-ccCEEeccCcccc
Confidence            344455555555443321  1223345567777776655333 222 33344 6777777776653

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=94.07  E-value=0.02  Score=52.79  Aligned_cols=48  Identities=27%  Similarity=0.570  Sum_probs=40.6

Q ss_pred             cCCCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccC-CCCCce
Q 021667            8 QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHD-PAMWRN   56 (309)
Q Consensus         8 ~~~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~-~~l~~~   56 (309)
                      .-.+.++.||.|+...||.||+.++++ ++++||+.|+.++.+ +..|+.
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~-~~~~v~~~w~~~~~~~~~~~~~  151 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLL-AVRQVCRNWNKLLDDDKVWWRM  151 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhh-hhhhhcchhhhhhhccchhhhh
Confidence            345789999999999999999999996 999999999999984 444433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.72  E-value=0.14  Score=49.51  Aligned_cols=98  Identities=17%  Similarity=0.155  Sum_probs=49.9

Q ss_pred             CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667          135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA  214 (309)
Q Consensus       135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~  214 (309)
                      ++|++|++++|.+..  +..  ...++|+.|.++++.+...    ..   .+   ..+|+.|++++|.++.  +..-  -
T Consensus       220 ~nL~~L~Ls~N~Lts--LP~--~l~~~L~~L~Ls~N~L~~L----P~---~l---~s~L~~L~Ls~N~L~~--LP~~--l  281 (754)
T PRK15370        220 GNIKTLYANSNQLTS--IPA--TLPDTIQEMELSINRITEL----PE---RL---PSALQSLDLFHNKISC--LPEN--L  281 (754)
T ss_pred             cCCCEEECCCCcccc--CCh--hhhccccEEECcCCccCcC----Ch---hH---hCCCCEEECcCCccCc--cccc--c
Confidence            466666666664432  110  0123566666665443311    11   11   1367777777776652  1110  1


Q ss_pred             CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667          215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      +++|+.|++++|....-...    .+.+|+.|++++|.++
T Consensus       282 ~~sL~~L~Ls~N~Lt~LP~~----lp~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        282 PEELRYLSVYDNSIRTLPAH----LPSGITHLNVQSNSLT  317 (754)
T ss_pred             CCCCcEEECCCCccccCccc----chhhHHHHHhcCCccc
Confidence            24688888877653321111    1226777888877765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.70  E-value=0.016  Score=52.04  Aligned_cols=106  Identities=22%  Similarity=0.284  Sum_probs=53.5

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      +.+|..|.+.+. .+.  .+..+...+++|++|++++|.|++  +..+.. ++.|+.|.+.++.+...        ..+.
T Consensus        94 ~~~l~~l~l~~n-~i~--~i~~~l~~~~~L~~L~ls~N~I~~--i~~l~~-l~~L~~L~l~~N~i~~~--------~~~~  159 (414)
T KOG0531|consen   94 LKSLEALDLYDN-KIE--KIENLLSSLVNLQVLDLSFNKITK--LEGLST-LTLLKELNLSGNLISDI--------SGLE  159 (414)
T ss_pred             ccceeeeecccc-chh--hcccchhhhhcchheecccccccc--ccchhh-ccchhhheeccCcchhc--------cCCc
Confidence            456666666532 222  112213456777777777776543  222222 44477777765433211        1111


Q ss_pred             hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCc
Q 021667          188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNV  229 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~  229 (309)
                       .+++|+.+++++|.++...-.. ...+.+++.+.+.++...
T Consensus       160 -~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  160 -SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             -cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence             2566677777776555433211 345666777777665433

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=93.50  E-value=0.12  Score=26.65  Aligned_cols=24  Identities=38%  Similarity=0.495  Sum_probs=18.1

Q ss_pred             CCcCEEEecCCCCCHHHHHHHHhc
Q 021667          135 PLLEELELSYCSLSQEALEAVGSL  158 (309)
Q Consensus       135 ~~L~~L~L~~~~~~~~~~~~l~~~  158 (309)
                      ++|++|+|++|.+++++...++..
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHH
Confidence            467888888888888877777654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=93.44  E-value=0.049  Score=47.28  Aligned_cols=89  Identities=18%  Similarity=0.125  Sum_probs=51.7

Q ss_pred             HhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHH
Q 021667          156 GSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKL  235 (309)
Q Consensus       156 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l  235 (309)
                      .+.+|+|++|+++++.++..      .-.++. ...+|+.|.|..|++..-.- .++.+...|+.|+|.+++..+-....
T Consensus       270 f~~L~~L~~lnlsnN~i~~i------~~~aFe-~~a~l~eL~L~~N~l~~v~~-~~f~~ls~L~tL~L~~N~it~~~~~a  341 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITRI------EDGAFE-GAAELQELYLTRNKLEFVSS-GMFQGLSGLKTLSLYDNQITTVAPGA  341 (498)
T ss_pred             HhhcccceEeccCCCccchh------hhhhhc-chhhhhhhhcCcchHHHHHH-HhhhccccceeeeecCCeeEEEeccc
Confidence            45577788888876544321      111222 55677777777775543222 23446677888888776654432233


Q ss_pred             HHHhHhccCceecCCCCC
Q 021667          236 GKICAERIRDLRHPNDST  253 (309)
Q Consensus       236 ~~~~~~~L~~L~l~~~~~  253 (309)
                      +.... .|.+|++-+|++
T Consensus       342 F~~~~-~l~~l~l~~Np~  358 (498)
T KOG4237|consen  342 FQTLF-SLSTLNLLSNPF  358 (498)
T ss_pred             ccccc-eeeeeehccCcc
Confidence            34444 677777777764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=93.18  E-value=0.056  Score=48.17  Aligned_cols=83  Identities=28%  Similarity=0.330  Sum_probs=39.3

Q ss_pred             CCccEEEeCCCCCCCHHHHHHHHhcC-CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          109 RNLRNLRLVSCYNISDQGFCEAIKGF-PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      +.++.|.+.+. .++.  +....... ++|+.|+++.+.+....  .-...+++|+.|.+..+.+.        .+....
T Consensus       116 ~~l~~L~l~~n-~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~--------~l~~~~  182 (394)
T COG4886         116 TNLTSLDLDNN-NITD--IPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLS--------DLPKLL  182 (394)
T ss_pred             cceeEEecCCc-cccc--Cccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhh--------hhhhhh
Confidence            45666666532 2222  22222223 26677777666554321  12244666777766643221        111111


Q ss_pred             hcCCCCcEEEecCCccC
Q 021667          188 ENMHGLRHLQLFGNELT  204 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~  204 (309)
                      ...++|+.|.++++.++
T Consensus       183 ~~~~~L~~L~ls~N~i~  199 (394)
T COG4886         183 SNLSNLNNLDLSGNKIS  199 (394)
T ss_pred             hhhhhhhheeccCCccc
Confidence            14566666666666544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=93.14  E-value=0.1  Score=51.31  Aligned_cols=110  Identities=24%  Similarity=0.176  Sum_probs=47.6

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      +++|.+|-+.....--...-..++..+|.|..|+|++|.-... +......+-+|+.|++.+.+.       ......+.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I-------~~LP~~l~  615 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGI-------SHLPSGLG  615 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCc-------cccchHHH
Confidence            4555555555321101111222345566666666666511111 111112244566666654221       11122222


Q ss_pred             hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667          188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF  227 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  227 (309)
                       ++..|.+|++..+..-. .+..+...+++|++|.+....
T Consensus       616 -~Lk~L~~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  616 -NLKKLIYLNLEVTGRLE-SIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             -HHHhhheeccccccccc-cccchhhhcccccEEEeeccc
Confidence             55566666666552110 012233346677777775443

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=92.82  E-value=0.16  Score=46.01  Aligned_cols=87  Identities=18%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             HHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC--ccChH-HHHHHHHhCCCCCeeecCCCCCc
Q 021667          153 EAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN--ELTNV-GLQAILDACPHLESLDLRQCFNV  229 (309)
Q Consensus       153 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~i~~~-~l~~l~~~~~~L~~L~l~~c~~~  229 (309)
                      ..+....|.+..++++++.+.     .-+.+..++...|+|+.|+|++|  .+... .+.++  ....|++|.+.|++..
T Consensus       211 ~~~~~n~p~i~sl~lsnNrL~-----~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc  283 (585)
T KOG3763|consen  211 KHIEENFPEILSLSLSNNRLY-----HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLC  283 (585)
T ss_pred             HHhhcCCcceeeeecccchhh-----chhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccc
Confidence            444556677777777754442     24556667777788888888887  33322 22222  2344778888887777


Q ss_pred             Cc-------hhHHHHHhHhccCcee
Q 021667          230 NL-------VGKLGKICAERIRDLR  247 (309)
Q Consensus       230 ~~-------~~~l~~~~~~~L~~L~  247 (309)
                      +.       ..++...+| +|..|+
T Consensus       284 ~tf~~~s~yv~~i~~~FP-KL~~LD  307 (585)
T KOG3763|consen  284 TTFSDRSEYVSAIRELFP-KLLRLD  307 (585)
T ss_pred             cchhhhHHHHHHHHHhcc-hheeec
Confidence            65       234555666 665553

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.78  E-value=0.089  Score=45.92  Aligned_cols=112  Identities=21%  Similarity=0.223  Sum_probs=65.7

Q ss_pred             hcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667          106 NRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA  185 (309)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  185 (309)
                      ...++|..|++++. -+.+  ++.-...+-.|+.|+++.|.|..-  .....-...++.+-.+.+...      ......
T Consensus       432 ~~l~kLt~L~L~NN-~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~l--P~~~y~lq~lEtllas~nqi~------~vd~~~  500 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNN-LLND--LPEEMGSLVRLQTLNLSFNRFRML--PECLYELQTLETLLASNNQIG------SVDPSG  500 (565)
T ss_pred             Hhhhcceeeecccc-hhhh--cchhhhhhhhhheecccccccccc--hHHHhhHHHHHHHHhcccccc------ccChHH
Confidence            34788899999864 2221  121122355699999999955421  111111122333333322222      111223


Q ss_pred             HHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc
Q 021667          186 IAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL  231 (309)
Q Consensus       186 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~  231 (309)
                      +. .+.+|.+|++.+|.+.  .+..++.+|.+|++|.+.|++.-..
T Consensus       501 l~-nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr~P  543 (565)
T KOG0472|consen  501 LK-NMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFRQP  543 (565)
T ss_pred             hh-hhhhcceeccCCCchh--hCChhhccccceeEEEecCCccCCC
Confidence            44 7889999999998553  4556677899999999999886654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=92.74  E-value=0.037  Score=49.70  Aligned_cols=131  Identities=22%  Similarity=0.227  Sum_probs=68.2

Q ss_pred             hcCCCccEEEeCCCCCCC-HHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHH
Q 021667          106 NRSRNLRNLRLVSCYNIS-DQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAK  184 (309)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  184 (309)
                      ..+++|++|++++. .++ ..++.    .++.|+.|++.+|.+.+.  ..+ ..+++|+.++++++.+...    ...  
T Consensus       115 ~~~~~L~~L~ls~N-~I~~i~~l~----~l~~L~~L~l~~N~i~~~--~~~-~~l~~L~~l~l~~n~i~~i----e~~--  180 (414)
T KOG0531|consen  115 SSLVNLQVLDLSFN-KITKLEGLS----TLTLLKELNLSGNLISDI--SGL-ESLKSLKLLDLSYNRIVDI----END--  180 (414)
T ss_pred             hhhhcchheecccc-ccccccchh----hccchhhheeccCcchhc--cCC-ccchhhhcccCCcchhhhh----hhh--
Confidence            34788888888854 444 33333    345588888888866542  111 2266777777776443311    000  


Q ss_pred             HHHhcCCCCcEEEecCCccChHH-HHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667          185 AIAENMHGLRHLQLFGNELTNVG-LQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       185 ~l~~~~~~L~~L~l~~~~i~~~~-l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      . ...+.+|+.+.+.++.+.... +...    ..+..+++..+......+.-..... +|+.+.++++++...
T Consensus       181 ~-~~~~~~l~~l~l~~n~i~~i~~~~~~----~~l~~~~l~~n~i~~~~~l~~~~~~-~L~~l~l~~n~i~~~  247 (414)
T KOG0531|consen  181 E-LSELISLEELDLGGNSIREIEGLDLL----KKLVLLSLLDNKISKLEGLNELVML-HLRELYLSGNRISRS  247 (414)
T ss_pred             h-hhhccchHHHhccCCchhcccchHHH----HHHHHhhcccccceeccCcccchhH-HHHHHhcccCccccc
Confidence            1 247788888888888554322 2211    1122223333222211110001111 478888888887654

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=92.73  E-value=0.22  Score=45.22  Aligned_cols=93  Identities=19%  Similarity=0.114  Sum_probs=45.7

Q ss_pred             HHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC--CCCHH-HHHHHHhcCCCCcEEEeccCCCCCCCcc
Q 021667          102 QYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC--SLSQE-ALEAVGSLCPLLRSFKLNNRGHRCPKIE  178 (309)
Q Consensus       102 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~  178 (309)
                      ..+....+.+.+++|.+..-..-..+..+.+..|+|+.|+|++|  .+... .+..  -....|++|-+.++.+......
T Consensus       211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K--~k~l~Leel~l~GNPlc~tf~~  288 (585)
T KOG3763|consen  211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK--LKGLPLEELVLEGNPLCTTFSD  288 (585)
T ss_pred             HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhh--hcCCCHHHeeecCCccccchhh
Confidence            33444456666666665533344555556666667777777666  22211 1111  1234566666665443222112


Q ss_pred             cchhHHHHHhcCCCCcEE
Q 021667          179 CDDDAKAIAENMHGLRHL  196 (309)
Q Consensus       179 ~~~~~~~l~~~~~~L~~L  196 (309)
                      ....+.++...+|+|..|
T Consensus       289 ~s~yv~~i~~~FPKL~~L  306 (585)
T KOG3763|consen  289 RSEYVSAIRELFPKLLRL  306 (585)
T ss_pred             hHHHHHHHHHhcchheee
Confidence            233344555566655544

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.81  E-value=0.42  Score=42.47  Aligned_cols=32  Identities=25%  Similarity=0.438  Sum_probs=22.5

Q ss_pred             CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCC
Q 021667          216 PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPND  251 (309)
Q Consensus       216 ~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~  251 (309)
                      ++|++|.+++|..+...    ...|.+|+.|.++.+
T Consensus       156 sSLk~L~Is~c~~i~LP----~~LP~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNIILP----EKLPESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCcccCc----ccccccCcEEEeccc
Confidence            46999999998866422    223448888888765

>PRK15386 type III secretion protein GogB; Provisional

Probab=91.38  E-value=0.097  Score=46.34  Aligned_cols=31  Identities=23%  Similarity=0.231  Sum_probs=17.7

Q ss_pred             CCCcEEEecCCccChHHHHHHHHhC-CCCCeeecCCC
Q 021667          191 HGLRHLQLFGNELTNVGLQAILDAC-PHLESLDLRQC  226 (309)
Q Consensus       191 ~~L~~L~l~~~~i~~~~l~~l~~~~-~~L~~L~l~~c  226 (309)
                      ++|++|.+.+|....     +.... .+|+.|.++.+
T Consensus       156 sSLk~L~Is~c~~i~-----LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-----LPEKLPESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-----CcccccccCcEEEeccc
Confidence            468888888774221     11112 35788877654

>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins

Probab=87.91  E-value=0.4  Score=33.32  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=22.5

Q ss_pred             CCCCCCcHHHHHHHhccCChhhhh
Q 021667           11 CDWTQLPADVTSTILSKIGAIDVL   34 (309)
Q Consensus        11 ~~~~~LP~eiL~~If~~L~~~d~~   34 (309)
                      +.|..||.|+-..|+++|+..|+.
T Consensus        70 ~~w~~LP~EIk~~Il~~L~~~dL~   93 (97)
T PF09372_consen   70 NYWNILPIEIKYKILEYLSNKDLK   93 (97)
T ss_pred             CchhhCCHHHHHHHHHcCCHHHHH
Confidence            789999999999999999999973

The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=87.84  E-value=0.51  Score=21.08  Aligned_cols=11  Identities=45%  Similarity=0.591  Sum_probs=4.3

Q ss_pred             CCcEEEecCCc
Q 021667          192 GLRHLQLFGNE  202 (309)
Q Consensus       192 ~L~~L~l~~~~  202 (309)
                      +|+.|++++|.
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            44444444443

...

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=87.21  E-value=0.5  Score=23.87  Aligned_cols=25  Identities=28%  Similarity=0.587  Sum_probs=17.3

Q ss_pred             CCcEEEecCCccChH-HHHHHHHhCC
Q 021667          192 GLRHLQLFGNELTNV-GLQAILDACP  216 (309)
Q Consensus       192 ~L~~L~l~~~~i~~~-~l~~l~~~~~  216 (309)
                      +|++|.|....+.++ .+..++.+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            477788887755444 6777777776

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=87.14  E-value=2  Score=36.70  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=65.7

Q ss_pred             HHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCC---CCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEec
Q 021667          124 DQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCP---LLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLF  199 (309)
Q Consensus       124 ~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~---~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~  199 (309)
                      +..+..+-..-+.|+++.|... .++...+..+...+.   ..+.+.+.+.....+   ....+..+.+.++.|++|++.
T Consensus       187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~tr~~d~---vA~a~a~ml~~n~sl~slnve  263 (353)
T KOG3735|consen  187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLANTRSSDP---VAFAIAEMLKENKSLTSLNVE  263 (353)
T ss_pred             HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhcccCCch---hHHHHHHHHhhcchhhheecc
Confidence            3445555555589999999888 888887777765553   355555554222211   122333445688999999999


Q ss_pred             CCccChHHHHHHHHhCCC---CCeeecCC
Q 021667          200 GNELTNVGLQAILDACPH---LESLDLRQ  225 (309)
Q Consensus       200 ~~~i~~~~l~~l~~~~~~---L~~L~l~~  225 (309)
                      +|.||..++.+++..+..   |..+.+.+
T Consensus       264 snFItg~gi~a~~~al~~n~tl~el~~dn  292 (353)
T KOG3735|consen  264 SNFITGLGIMALLRALQSNKSLTELKNDN  292 (353)
T ss_pred             ccccccHHHHHHHHHHhccchhhHhhhhh
Confidence            999999999998877654   55554433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=80.46  E-value=0.96  Score=33.66  Aligned_cols=86  Identities=13%  Similarity=0.070  Sum_probs=55.5

Q ss_pred             CCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhH
Q 021667          161 LLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICA  240 (309)
Q Consensus       161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~  240 (309)
                      .+..++++.|.+.    .....+..+. ....|+..+|++|.+.+- -..+....|.++.|++.++.......+ ....+
T Consensus        28 E~h~ldLssc~lm----~i~davy~l~-~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~neisdvPeE-~Aam~  100 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM----YIADAVYMLS-KGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLANNEISDVPEE-LAAMP  100 (177)
T ss_pred             Hhhhcccccchhh----HHHHHHHHHh-CCceEEEEecccchhhhC-CHHHhhccchhhhhhcchhhhhhchHH-HhhhH
Confidence            4555666654332    1233344444 667788889999865421 223444567899999988765554555 55567


Q ss_pred             hccCceecCCCCCC
Q 021667          241 ERIRDLRHPNDSTH  254 (309)
Q Consensus       241 ~~L~~L~l~~~~~~  254 (309)
                       .|+.|+++.|++.
T Consensus       101 -aLr~lNl~~N~l~  113 (177)
T KOG4579|consen  101 -ALRSLNLRFNPLN  113 (177)
T ss_pred             -HhhhcccccCccc
Confidence             8999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-24
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-16
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-22
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-18
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-17
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-18
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	5e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-06
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	7e-07
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	7e-07
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	1e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 99.2 bits (247), Expect = 4e-24
 Identities = 48/265 (18%), Positives = 87/265 (32%), Gaps = 47/265 (17%)

Query: 6   AEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHN---- 61
                  W  LP ++   I S +   + L     VC  W R+  D ++W+ +D+      
Sbjct: 2   ENFPGVSWDSLPDELLLGIFSCLCLPE-LLKVSGVCKRWYRLASDESLWQTLDLTGKNLH 60

Query: 62  ---LGDLWDMDHDLEKMCRHAVD------RSNGQLLSINIEY-FGTDELLQYIANRSRNL 111
               G L        +  R  +D       S  ++  +++         L  I ++   L
Sbjct: 61  PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 120

Query: 112 RN------------------------LRLVSCYNISDQGFCEAIKGFPLLEELELSYCS- 146
           +N                        L L  C   S+      +     L+EL LS+C  
Sbjct: 121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180

Query: 147 LSQEALE-AVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFG-NELT 204
            +++ ++ AV  +   +    L+       K     D   +      L HL L     L 
Sbjct: 181 FTEKHVQVAVAHVSETITQLNLS----GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236

Query: 205 NVGLQAILDACPHLESLDLRQCFNV 229
           N   Q       +L+ L L +C+++
Sbjct: 237 NDCFQEFFQ-LNYLQHLSLSRCYDI 260

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 76.8 bits (189), Expect = 3e-16
 Identities = 27/147 (18%), Positives = 55/147 (37%), Gaps = 11/147 (7%)

Query: 97  TDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAI-KGFPLLEELELSYCS--LSQEALE 153
           ++  LQ + +    L  L L  C++ +++    A+      + +L LS     L +  L 
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215

Query: 154 AVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFG-NELTNVGLQAIL 212
            +   CP L    L         ++ +D  +     ++ L+HL L    ++    L   L
Sbjct: 216 TLVRRCPNLVHLDL----SDSVMLK-NDCFQEFF-QLNYLQHLSLSRCYDIIPETLLE-L 268

Query: 213 DACPHLESLDLRQCFNVNLVGKLGKIC 239
              P L++L +        +  L +  
Sbjct: 269 GEIPTLKTLQVFGIVPDGTLQLLKEAL 295

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 68.4 bits (167), Expect = 3e-13
 Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 17/156 (10%)

Query: 97  TDELLQY-IANRSRNLRNLRLVSCY-NISDQGFCEAIKGFPLLEELELSYCS-LSQEALE 153
           T++ +Q  +A+ S  +  L L     N+        ++  P L  L+LS    L  +  +
Sbjct: 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 241

Query: 154 AVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILD 213
                   L+   L     RC  I   +    +   +  L+ LQ+FG  + +  LQ + +
Sbjct: 242 EFFQ-LNYLQHLSL----SRCYDI-IPETLLELG-EIPTLKTLQVFGI-VPDGTLQLLKE 293

Query: 214 ACPHLESLDLRQCFNVNLVGK--LGKICAERIRDLR 247
           A PHL+      C +   + +  +G    + I  ++
Sbjct: 294 ALPHLQ----INCSHFTTIARPTIGNKKNQEIWGIK 325

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 96.5 bits (240), Expect = 2e-22
 Identities = 48/281 (17%), Positives = 76/281 (27%), Gaps = 45/281 (16%)

Query: 11  CDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRI------------CHDPAMWR--- 55
                 P +V   + S I       S   VC SW  I            C+  +      
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR 63

Query: 56  --------------NIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFG-TDEL 100
                         +    NL       +    +   A+  S   L  I ++    TD+ 
Sbjct: 64  RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWI--EAMSSSYTWLEEIRLKRMVVTDDC 121

Query: 101 LQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQ---EALEAVGS 157
           L+ IA   +N + L L SC   S  G          L+EL+L    +       L     
Sbjct: 122 LELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181

Query: 158 LCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPH 217
               L S  ++               + +      L+ L+L         L  +L   P 
Sbjct: 182 TYTSLVSLNISC----LASEVSFSALERLVTRCPNLKSLKLNRAV-PLEKLATLLQRAPQ 236

Query: 218 LESLDLRQCFNVNLVGKLGKICA-----ERIRDLRHPNDST 253
           LE L                +       + +R L    D+ 
Sbjct: 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 83.4 bits (206), Expect = 5e-18
 Identities = 39/178 (21%), Positives = 66/178 (37%), Gaps = 18/178 (10%)

Query: 61  NLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLV--- 117
           NL       +DL K+          +L  + +  +  D  L+ +A+  ++LR LR+    
Sbjct: 295 NLSYATVQSYDLVKLLCQCP-----KLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE 349

Query: 118 -----SCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGH 172
                    +++QG      G P LE +      ++  AL  +    P +  F+L     
Sbjct: 350 PFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEP 409

Query: 173 RCPKIEC----DDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQC 226
           + P        D    AI E+   LR L L G  LT+   + I      +E L +   
Sbjct: 410 KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEYIGTYAKKMEMLSVAFA 466

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 82.3 bits (203), Expect = 1e-17
 Identities = 22/165 (13%), Positives = 49/165 (29%), Gaps = 7/165 (4%)

Query: 86  QLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC 145
           +L  ++  +      L  + +    L  L L     +      + +   P L+ L +   
Sbjct: 266 ELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYA-TVQSYDLVKLLCQCPKLQRLWVLDY 324

Query: 146 SLSQEALEAVGSLCPLLRSFKLNNRGH----RCPKIECDDDAKAIAENMHGLRHLQLFGN 201
            +    LE + S C  LR  ++             +  +    +++     L  +  F  
Sbjct: 325 -IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL-TEQGLVSVSMGCPKLESVLYFCR 382

Query: 202 ELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDL 246
           ++TN  L  I    P++    L             +        +
Sbjct: 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAI 427

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 78.8 bits (194), Expect = 2e-16
 Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 16/139 (11%)

Query: 97  TDELLQYIANRSRNLRNLRLVSC---------YNISDQGFCEAIKGFPLLEELELSYCSL 147
           T+  L  IA    N+   RL                D GF   ++    L  L LS   L
Sbjct: 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-L 443

Query: 148 SQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVG 207
           + +  E +G+    +    +   G      + D     +      LR L++      +  
Sbjct: 444 TDKVFEYIGTYAKKMEMLSVAFAG------DSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497

Query: 208 LQAILDACPHLESLDLRQC 226
           L A       + SL +  C
Sbjct: 498 LLANASKLETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 76.9 bits (189), Expect = 7e-16
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 21/157 (13%)

Query: 86  QLLSINIEYF---GTDELLQYIANRSRNLRNLRLVS-CYNISDQGFCEAIKGFPLLEELE 141
           QL  +    +      ++   ++      + LR +S  ++               L  L 
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

Query: 142 LSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN 201
           LSY ++    L  +   CP L+   +         IE D   + +A     LR L++F +
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWV------LDYIE-DAGLEVLASTCKDLRELRVFPS 348

Query: 202 E---------LTNVGLQAILDACPHLESLDLRQCFNV 229
           E         LT  GL ++   CP LES+ L  C  +
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQM 384

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 83.8 bits (207), Expect = 3e-18
 Identities = 25/139 (17%), Positives = 52/139 (37%), Gaps = 15/139 (10%)

Query: 97  TDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVG 156
               +  +   +  +R L L+     ++   C  I+  P LE LE     +    LE + 
Sbjct: 281 GPNEMPILFPFAAQIRKLDLLYALLETEDH-CTLIQKCPNLEVLETRNV-IGDRGLEVLA 338

Query: 157 SLCPLLRSFKLNNRGHRCPKIECDDDA---------KAIAENMHGLRHLQLFGNELTNVG 207
             C  L+  ++     R    +  +D           A+A+    L ++ ++ +++TN  
Sbjct: 339 QYCKQLKRLRIE----RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394

Query: 208 LQAILDACPHLESLDLRQC 226
           L++I     +L    L   
Sbjct: 395 LESIGTYLKNLCDFRLVLL 413

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 81.9 bits (202), Expect = 1e-17
 Identities = 29/139 (20%), Positives = 47/139 (33%), Gaps = 15/139 (10%)

Query: 97  TDELLQYIANRSRNLRNLRLVSCYNIS-------DQGFCEAIKGFPLLEELELSYCS--L 147
           T+E L+ I    +NL + RLV             D G    + G   L           L
Sbjct: 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450

Query: 148 SQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVG 207
           +   L  +G   P +R   L   G      E D+     +     L+ L++ G   +   
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVG------ESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504

Query: 208 LQAILDACPHLESLDLRQC 226
           + A +   P L  L ++  
Sbjct: 505 IAAAVTKLPSLRYLWVQGY 523

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 79.2 bits (195), Expect = 1e-16
 Identities = 42/268 (15%), Positives = 75/268 (27%), Gaps = 44/268 (16%)

Query: 1   MSTGTAEQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMH 60
           M     ++          DV   +++ I       SA  VC  W +I  D     ++ M 
Sbjct: 1   MEDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI--DSETREHVTMA 58

Query: 61  NLGDLWDMDHDLEKMCRH-------------------------------AVDRSNGQLLS 89
                      L +   +                                +  +  QL S
Sbjct: 59  LCYTA--TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKS 116

Query: 90  INIEYFG-TDELLQYIAN-RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSL 147
           ++      +D  L  +A  R+ +L  L+L  C   +  G    +     ++ L +   S 
Sbjct: 117 VHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSF 176

Query: 148 SQ---EALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNE-L 203
           S+   + L  +      L             KI    D + IA N   L  +++   E L
Sbjct: 177 SEKDGKWLHELAQHNTSLEVLNFYMTE--FAKI-SPKDLETIARNCRSLVSVKVGDFEIL 233

Query: 204 TNVGLQAILDACPHLESLDLRQCFNVNL 231
             VG               L +   +  
Sbjct: 234 ELVGFFKAAANLEEFCGGSLNEDIGMPE 261

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 79.2 bits (195), Expect = 1e-16
 Identities = 27/146 (18%), Positives = 49/146 (33%), Gaps = 9/146 (6%)

Query: 91  NIEYFGTDELLQYIANRSRNLRNLRLVS-CYNISDQGFCEAIKGFPLLEELELSYCSLSQ 149
            I     D  ++ +    + LR          ++D G     +  P +  + L Y   S 
Sbjct: 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477

Query: 150 EALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELT--NVG 207
           E L      CP L+  ++      C     +    A    +  LR+L + G   +     
Sbjct: 478 EGLMEFSRGCPNLQKLEMRG----CCF--SERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531

Query: 208 LQAILDACPHLESLDLRQCFNVNLVG 233
           L  +     ++E +  R+   VN  G
Sbjct: 532 LMQMARPYWNIELIPSRRVPEVNQQG 557

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 76.5 bits (188), Expect = 1e-15
 Identities = 23/138 (16%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 97  TDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQ------- 149
           +   L  +A   + L  + +    +I+++           L +  L      +       
Sbjct: 366 SQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424

Query: 150 -EALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGL 208
              + ++   C  LR F       R   +  D     I +    +R + L     ++ GL
Sbjct: 425 DNGVRSLLIGCKKLRRFAFY---LRQGGL-TDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480

Query: 209 QAILDACPHLESLDLRQC 226
                 CP+L+ L++R C
Sbjct: 481 MEFSRGCPNLQKLEMRGC 498

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 74.6 bits (183), Expect = 5e-15
 Identities = 24/182 (13%), Positives = 55/182 (30%), Gaps = 33/182 (18%)

Query: 78  HAVDRSNGQLLSINIEYFG----TDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKG 133
           H + + N  L  +N         + + L+ IA   R+L ++++     +   GF +A   
Sbjct: 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAAN 244

Query: 134 FPLLEELELSYC----------------------SLSQEALEAVGSLCPLLRSFKLNNRG 171
                   L+                         +    +  +      +R   L    
Sbjct: 245 LEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY-- 302

Query: 172 HRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL 231
                    +D   + +    L  L+   N + + GL+ +   C  L+ L + +  +   
Sbjct: 303 --ALLE--TEDHCTLIQKCPNLEVLET-RNVIGDRGLEVLAQYCKQLKRLRIERGADEQG 357

Query: 232 VG 233
           + 
Sbjct: 358 ME 359

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 3/104 (2%)

Query: 97  TDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVG 156
           +DE L   +    NL+ L +  C   S++    A+   P L  L +     S    + + 
Sbjct: 476 SDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534

Query: 157 SLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFG 200
              P      + +R    P++    + + +    H L +  L G
Sbjct: 535 MARPYWNIELIPSRR--VPEVNQQGEIREMEHPAHILAYYSLAG 576

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 77.7 bits (190), Expect = 2e-16
 Identities = 34/259 (13%), Positives = 79/259 (30%), Gaps = 24/259 (9%)

Query: 13  WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDL 72
             ++  D     L +I         +        I  +   + + +    GD+   + ++
Sbjct: 97  MDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEI 156

Query: 73  EKMCRHAVDRSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIK 132
             + +  +      +  +N         L        NL++L ++S              
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS 216

Query: 133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIE---------CDDDA 183
             P LE+L L            +    PL           R P ++          +   
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS-------KDRFPNLKWLGIVDAEEQNVVV 269

Query: 184 KAIAE--NMHGLRHLQLFGNELTNVGLQAILDACP---HLESLDLRQCFNVNLVGKLGKI 238
           +   E   +  L  + +    LT+ G + +LD      HL+ ++++  +   L  ++ K 
Sbjct: 270 EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY---LSDEMKKE 326

Query: 239 CAERIRDLRHPNDSTHDYE 257
             + +      +DS    +
Sbjct: 327 LQKSLPMKIDVSDSQEYDD 345

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 25/166 (15%)

Query: 79  AVDRSNGQLLSINIEYFG-TDELLQYIAN---RSRNLRNLRLVSCYNISDQG---FCEAI 131
            +   + +L ++ I   G T +    +        +L+ L L +   + D+G    CE +
Sbjct: 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL-AGNELGDEGARLLCETL 308

Query: 132 K-GFPLLEELELSYCSLSQEALEAVGSL---CPLLRSFKLNNRGHRCPKIECDDDAKAIA 187
                 LE L +  CS +        S+      L   +++N      ++E D   + + 
Sbjct: 309 LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-----RLE-DAGVRELC 362

Query: 188 E----NMHGLRHLQLFGNELTNVGLQAI---LDACPHLESLDLRQC 226
           +        LR L L   ++++    ++   L A   L  LDL   
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.2 bits (157), Expect = 8e-12
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 25/154 (16%)

Query: 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSL---CPLLRS 164
           S ++++L +  C  +SD  + E +      + + L  C L++   + + S     P L  
Sbjct: 2   SLDIQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE 60

Query: 165 FKLNNRGHRCPKIECDDDAKAIAENMH----GLRHLQLFGNELTNVGLQAI---LDACPH 217
             L +      ++  D     + + +      ++ L L    LT  G   +   L   P 
Sbjct: 61  LNLRSN-----ELG-DVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 218 LESLDLRQCFNVNLVGKLGKICAERI-RDLRHPN 250
           L+ L L           LG    + +   L  P 
Sbjct: 115 LQELHLSDN-------LLGDAGLQLLCEGLLDPQ 141

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 36/174 (20%)

Query: 97  TDELLQYIAN---RSRNLRNLRLVSCYNISDQG---FCEAIKGFPL-LEELELSYCSLSQ 149
           +    + +A+      + + L + S  +I++ G    C+ +K  P  LE L+L  C ++ 
Sbjct: 155 SAASCEPLASVLRAKPDFKELTV-SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS 213

Query: 150 EALEAVGSL---CPLLRSFKL--NNRGHRCPKIECDDDAKAIAENM----HGLRHLQLFG 200
           +    +  +      LR   L  N  G        D     +   +      LR L ++ 
Sbjct: 214 DNCRDLCGIVASKASLRELALGSNKLG--------DVGMAELCPGLLHPSSRLRTLWIWE 265

Query: 201 NELTNVGLQAI---LDACPHLESLDLRQCFNVNLVGKLGKICAERIRD-LRHPN 250
             +T  G   +   L A   L+ L L          +LG   A  + + L  P 
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGN-------ELGDEGARLLCETLLEPG 312

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 34/173 (19%)

Query: 97  TDELLQYIAN---RSRNLRNLRLVSCYNISDQG---FCEAIK-GFPLLEELELSYCSLSQ 149
           T      +++       L+ L L     + D G    CE +      LE+L+L YCSLS 
Sbjct: 98  TGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156

Query: 150 EALEAVGSL---CPLLRSFKL-NNRGHRCPKIECDDDAKAIAE----NMHGLRHLQLFGN 201
            + E + S+    P  +   + NN       I  +   + + +    +   L  L+L   
Sbjct: 157 ASCEPLASVLRAKPDFKELTVSNN------DIN-EAGVRVLCQGLKDSPCQLEALKLESC 209

Query: 202 ELTNVGLQAI---LDACPHLESLDLRQCFNVNLVGKLGKICAERI-RDLRHPN 250
            +T+   + +   + +   L  L L          KLG +    +   L HP+
Sbjct: 210 GVTSDNCRDLCGIVASKASLRELALGSN-------KLGDVGMAELCPGLLHPS 255

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 31/162 (19%), Positives = 58/162 (35%), Gaps = 27/162 (16%)

Query: 79  AVDRSNGQLLSINIEYFG-TDELLQYIAN---RSRNLRNLRLVSCYNISDQG---FCEAI 131
            +     QL S+ ++    T     + ++   ++R L  L++ S   + D G    C+ +
Sbjct: 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI-SNNRLEDAGVRELCQGL 365

Query: 132 KGF-PLLEELELSYCSLSQEALEAVGSL---CPLLRSFKL-NNRGHRCPKIECDDDAKAI 186
                +L  L L+ C +S  +  ++ +       LR   L NN       +  D     +
Sbjct: 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN------CLG-DAGILQL 418

Query: 187 AE----NMHGLRHLQLFGNELTNVG---LQAILDACPHLESL 221
            E        L  L L+    +      LQA+    P L  +
Sbjct: 419 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 23/152 (15%), Positives = 46/152 (30%), Gaps = 22/152 (14%)

Query: 104 IANRSRNLRNLRLVSCYNISDQG---FCEAIKGFPLLEELELSYCSLSQEALEAVGSL-- 158
           +A  S  +    L     I+ +        +     ++E+ LS  ++  EA   +     
Sbjct: 1   MARFS--IEGKSL-KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA 57

Query: 159 -CPLLRSFKLNNRGHRCPKIECDDDAKAIAE---NMHGLRHLQLFGNELTNVGLQAI--- 211
               L   + ++      K E  +  + + +       L  ++L  N       + +   
Sbjct: 58  SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDF 117

Query: 212 LDACPHLESLDLRQCFNVNLVGKLGKICAERI 243
           L     LE L L           LG     +I
Sbjct: 118 LSKHTPLEHLYLHNN-------GLGPQAGAKI 142

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 33/191 (17%)

Query: 72  LEKMCRHAVDRSNGQLLSINIEY--FGTDELLQYIAN---RSRNLRNLRLVSCYNISDQG 126
           L+++  +   ++   L SI         +  ++  A      R L  +++V    I  +G
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLE-NGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEG 203

Query: 127 ----FCEAIKGFPLLEELELSYCSLSQEALEAVGSL---CPLLRSFKLNNRGHRCPKIEC 179
                 E +     L+ L+L   + +     A+       P LR   LN+    C  +  
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND----C-LLS- 257

Query: 180 DDDAKAIAENMHG-----LRHLQLFGNELTNVGLQAILDA----CPHLESLDLRQCFNVN 230
              A A+ +         L+ L+L  NE+    ++ +        P L  L+L      N
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG----N 313

Query: 231 LVGKLGKICAE 241
              +   +  E
Sbjct: 314 RFSEEDDVVDE 324

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 26/161 (16%)

Query: 88  LSINIEYFGTDELLQYIAN---RSRNLRNLRLVSCYNISDQG---FCEAIKGFPLLEELE 141
           +          E L+ +     +   L  +RL               + +     LE L 
Sbjct: 70  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 142 LSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIE---------CDDDAKAIAE---N 189
           L    L  +A      +   L+   +N +    P +           +   K  A+   +
Sbjct: 129 LHNNGLGPQAGAK---IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185

Query: 190 MHGLRHLQLFGNELTNVGLQAI----LDACPHLESLDLRQC 226
              L  +++  N +   G++ +    L  C  L+ LDL+  
Sbjct: 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 61.3 bits (149), Expect = 8e-11
 Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 28/169 (16%)

Query: 91  NIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQG---FCEAIKGFPL-LEELELSYCS 146
           +     + E  Q  +N   ++ +L L    ++  +      + +   P  +  L L   +
Sbjct: 120 DFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNN 178

Query: 147 LSQEALEAVG----SLCPLLRSFKL-NNRGHRCPKIECDDDAKAIAE----NMHGLRHLQ 197
           L+ +    +     S+   + S  L  N       +        +A       + +  L 
Sbjct: 179 LASKNCAELAKFLASIPASVTSLDLSANL------LG-LKSYAELAYIFSSIPNHVVSLN 231

Query: 198 LFGNELTNVGLQAI---LDACPHLESLDLRQCFNVNLVGKLGKICAERI 243
           L  N L    L+ +    D+  HL+++ L      ++V  + K   + +
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDY----DIVKNMSKEQCKAL 276

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 27/172 (15%), Positives = 55/172 (31%), Gaps = 33/172 (19%)

Query: 99  ELLQYIANRSRNLRNLRLVSCYNISDQG---FCEAIKGFPL-LEELELSYCSLSQEALEA 154
             ++   +    + +L L S  N+         +A    P  +  L LS  SL  +  + 
Sbjct: 12  NPVEEFTSIPHGVTSLDL-SLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE 70

Query: 155 VGSLCPLLRSFK-----LNNRGHRCPKIECDDDAKAIAENMHG----LRHLQLFGNELTN 205
              L  +L +       LN  G+    +     +  + + +      +  L L  N+ ++
Sbjct: 71  ---LVQILAAIPANVTSLNLSGN---FLS-YKSSDELVKTLAAIPFTITVLDLGWNDFSS 123

Query: 206 VGLQAILDA----CPHLESLDLRQCFNVNLVGKLGKICAERIRD-LRHPNDS 252
                   A       + SL+LR          LG   ++ +   L     +
Sbjct: 124 KSSSEFKQAFSNLPASITSLNLRGN-------DLGIKSSDELIQILAAIPAN 168

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 24/178 (13%), Positives = 58/178 (32%), Gaps = 32/178 (17%)

Query: 91  NIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQG---FCEAIKGFPL-LEELELSYCS 146
           ++    +DEL+Q +A    N+ +L L    N++ +      + +   P  +  L+LS   
Sbjct: 149 DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL 207

Query: 147 LSQEALEAVGSLCPLLRSFKLNNRGHRCPKIEC----DDDAKAIAENMHG---LRHLQLF 199
           L  ++         L   F           +          + +         L+ + L 
Sbjct: 208 LGLKSYAE------LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 200 GNELTNVG---LQAILDA---CPHLESLDLRQCFNVNLVGKLGKICAERIRD-LRHPN 250
            + + N+     +A+  A      +  +D           ++    +  I + +R  +
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-------EIHPSHSIPISNLIRELS 312

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 26/134 (19%), Positives = 45/134 (33%), Gaps = 28/134 (20%)

Query: 109 RNLRNLRLVSCYNISDQG---FCEAIK-GFPLLEELELSYCSLSQEALEAVGSLCPLLRS 164
            +LR L L     ++          +  G   L+E+ L+ C L    L     L P+   
Sbjct: 72  SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRT---LLPVFLR 127

Query: 165 FK-----LNNRGHRCPKIECDDDAKAIAE----NMHGLRHLQLFGNELTNVGLQAI---L 212
            +     LN+ G         +  K + +    +   +  L+L  N LT  G+  +   L
Sbjct: 128 ARKLGLQLNSLG--------PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179

Query: 213 DACPHLESLDLRQC 226
                +  L L   
Sbjct: 180 AGNTSVTHLSLLHT 193

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 23/132 (17%)

Query: 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSL----CPLLR 163
              L  + L +   +   G    +  F    +L L   SL  EA + +  L       + 
Sbjct: 100 RHALDEVNL-ASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 164 SFKLNNRGHRCPKIEC---DDDAKAIAE---NMHGLRHLQLFGNELTNVGLQAI---LDA 214
           + +L+N                   + E       + HL L    L + GL+ +   LD 
Sbjct: 159 TLRLSN---------NPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR 209

Query: 215 CPHLESLDLRQC 226
              L+ L++   
Sbjct: 210 NRQLQELNVAYN 221

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 20/156 (12%)

Query: 100 LLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLC 159
           +L  +    +NL  L       I  +      +  P  E L+  +     +       + 
Sbjct: 14  VLAQLGCPIKNLDALENAQA--IKKKLGKLGRQVLPPSELLDHLFFHYEFQNQRFSAEVL 71

Query: 160 PLLRSFKLNNRGHRCPKIECDDDAKAIAE----NMHGLRHLQLFGNELTNVGLQAILDAC 215
             LR   L        ++        +A       H L  + L   +L   GL+ +L   
Sbjct: 72  SSLRQLNLAGV-----RM-TPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF 125

Query: 216 PHLESLDLRQCFNVNLVGKLGKICAERIRD-LRHPN 250
                L L+          LG    + +RD L H  
Sbjct: 126 LRARKLGLQLN-------SLGPEACKDLRDLLLHDQ 154

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 30/138 (21%), Positives = 48/138 (34%), Gaps = 12/138 (8%)

Query: 91  NIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQG---FCEAIKGFPLLEELELSYCSL 147
           ++      +L   + +    +  LRL +   ++  G     E + G   +  L L +  L
Sbjct: 137 SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195

Query: 148 SQEALEAVGSLCPLLRS-FKLNNRGHRCPKIECDDDAKAIAE---NMHGLRHLQLFGNEL 203
             E LE    L   L    +L            D  A A+A        L  L L+ NEL
Sbjct: 196 GDEGLEL---LAAQLDRNRQLQELNVAYNGAG-DTAALALARAAREHPSLELLHLYFNEL 251

Query: 204 TNVGLQAILDACPHLESL 221
           ++ G Q + D     E  
Sbjct: 252 SSEGRQVLRDLGGAAEGG 269

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 7  EQESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNID 58
                W  LP ++   I S +   + L     VC  W R+  D ++W+ +D
Sbjct: 3  NFPGVSWDSLPDELLLGIFSCLCLPE-LLKVSGVCKRWYRLASDESLWQTLD 53

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 50/344 (14%), Positives = 109/344 (31%), Gaps = 105/344 (30%)

Query: 30  AIDVLTSAQRVCSS-----WLRI--CHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDR 82
           A+DV  S +  C       WL +  C+ P       +  L  L    + ++       D 
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSP----ETVLEMLQKLL---YQIDPNWTSRSDH 219

Query: 83  SNGQLLSINIEYFGTDELLQYIANRS--------RNLRNLRLVSCYNIS--------DQG 126
           S+   L I+       EL + + ++          N++N +  + +N+S         + 
Sbjct: 220 SSNIKLRIHSIQ---AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276

Query: 127 FCEAIKGF----PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDD 182
             + +         L+   ++      E          LL  + L+ R    P+     +
Sbjct: 277 VTDFLSAATTTHISLDHHSMTL--TPDEVKS-------LLLKY-LDCRPQDLPREVLTTN 326

Query: 183 AKA---IAENMHGLRH-----LQLFGNELTNVGLQAILDACPHLESLDLRQCF------- 227
            +    IAE++            +  ++LT + +++ L+    LE  + R+ F       
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTI-IESSLN---VLEPAEYRKMFDRLSVFP 382

Query: 228 -NVN--------LVGKLGKICAERIRDL--------RHPNDST---HDYEFGADFQDFCW 267
            + +        +   + K     + +         + P +ST           + +   
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI-----YLELKV 437

Query: 268 SS----------VEDY--PSGISDIELVSDEDDYYEFSDYDFGY 299
                       V+ Y  P      +L+    D Y +S +  G+
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-H-IGH 479

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 137 LEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHG---L 193
           ++ ++ +   +     + +      +   +L      C  IE D   + +++  +    +
Sbjct: 63  IQAIDATDSCIMSIGFDHMEG-LQYVEKIRLCK----CHYIE-DGCLERLSQLENLQKSM 116

Query: 194 RHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNV 229
             +++     +T+ G+ A L    +L+ L L     V
Sbjct: 117 LEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGV 152

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)

Query: 97  TDELLQYIA---NRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALE 153
            D  L+ ++   N  +++  + ++SC N++D+G   A+  F  L+ L LS     +E  +
Sbjct: 99  EDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGVKEKEK 157

Query: 154 AVGSLCPLLRSFKLN 168
            V +    L S +L 
Sbjct: 158 IVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 18/117 (15%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 87  LLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFP----LLEELEL 142
           + +I+        +        + +  +RL  C+ I D    E +         + E+E+
Sbjct: 63  IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGC-LERLSQLENLQKSMLEMEI 121

Query: 143 SYCS-LSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQL 198
             C  ++ + + A+      L+   L++     P ++  +  K +      L  L+L
Sbjct: 122 ISCGNVTDKGIIALHH-FRNLKYLFLSD----LPGVK--EKEKIVQAFKTSLPSLEL 171

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 22/137 (16%), Positives = 46/137 (33%), Gaps = 34/137 (24%)

Query: 98  DELLQYIANRSRNLRNLRLVSCYNISDQG---FCEAIKGFPLLEELELSYCSLSQEALEA 154
           +E L+ I N   +L  + L +  NI         EA+K    +++  +     +     A
Sbjct: 25  EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA 84

Query: 155 VGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA 214
           +                           A+ +  N + L+ L +  N ++  G+ A+++A
Sbjct: 85  L---------------------------AEMLKVN-NTLKSLNVESNFISGSGILALVEA 116

Query: 215 CPH---LESLDLRQCFN 228
                 L  L +     
Sbjct: 117 LQSNTSLIELRIDNQSQ 133

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Length = 197

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 22/158 (13%), Positives = 48/158 (30%), Gaps = 32/158 (20%)

Query: 98  DELLQYIANRSRNLRNLRLVSCYNISDQG---FCEAIKGFPLLEELELSYCSLSQEALEA 154
           +  +  +     +L+ + + +   +S +      EA      +E+  L+  ++S      
Sbjct: 30  ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 89

Query: 155 VGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA 214
           +                            + I  +   LR L +  N LT   L  +L +
Sbjct: 90  L---------------------------IELIETS-PSLRVLNVESNFLTPELLARLLRS 121

Query: 215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS 252
               +S+   +  N      LG      +      N+S
Sbjct: 122 TLVTQSIVEFKADN-QRQSVLGNQVEMDMMMAIEENES 158

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 9/77 (11%)

Query: 10 SCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNL------- 62
          +   T+LP DV   ILS +   D L         W     DP +WR   + +L       
Sbjct: 2  ASTLTRLPIDVQLYILSFLSPHD-LCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVD 60

Query: 63 -GDLWDMDHDLEKMCRH 78
             L D++   + +   
Sbjct: 61 WKSLPDLEILKKPISEV 77

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 21/121 (17%), Positives = 35/121 (28%), Gaps = 13/121 (10%)

Query: 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPL--LRSFK 166
               +L+ +               G   LE L+  + +L Q  +        L  L    
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRNLIYLD 427

Query: 167 L-NNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQ 225
           + +           +         +  L  L++ GN      L  I     +L  LDL Q
Sbjct: 428 ISHTHTRVAFNGIFN--------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 226 C 226
           C
Sbjct: 480 C 480

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 13/116 (11%)

Query: 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLN 168
             L  L  ++   ++       +     L++LELS   +S   LE +   CP L    L+
Sbjct: 42  EELEFLSTINV-GLTS---IANLPKLNKLKKLELSDNRVSG-GLEVLAEKCPNLTHLNLS 96

Query: 169 NRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVG--LQAILDACPHLESLD 222
                  KI+     + +   +  L+ L LF  E+TN+    + +    P L  LD
Sbjct: 97  GN-----KIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 15/105 (14%)

Query: 137 LEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRG-------HRCPKIEC--------DD 181
           ++EL L     ++  LE +      L      N G        +  K++           
Sbjct: 19  VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSG 78

Query: 182 DAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQC 226
             + +AE    L HL L GN++ ++     L    +L+SLDL  C
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 13/118 (11%)

Query: 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLN 168
            NL  L L++   +        +   P L++LELS   +    L+ +    P L    L+
Sbjct: 49  VNLEFLSLINV-GLIS---VSNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLS 103

Query: 169 NRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGL--QAILDACPHLESLDLR 224
                  K++     + +   +  L+ L LF  E+TN+    +++    P L  LD  
Sbjct: 104 GN-----KLKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 137 LEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRG-------HRCPKIEC--------DD 181
           + EL L  C  +   +E + +    L    L N G        + PK++           
Sbjct: 26  VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFG 85

Query: 182 DAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQC 226
               +AE +  L HL L GN+L ++     L     L+SLDL  C
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 29/158 (18%), Positives = 56/158 (35%), Gaps = 16/158 (10%)

Query: 83  SNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELEL 142
            + ++ SI++     +     +++   +L  L  +   N    G     K    L  L+L
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 143 SYCSLSQEALEAVGSL--CPLLRSFKL-NNRGHRCPKIECDDDAKAIAENMHGLRHLQLF 199
           S  SLS   +  + SL  C  L+   + +N      K+            ++ L  L L 
Sbjct: 108 SRNSLS-GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS-------GGLKLNSLEVLDLS 159

Query: 200 GNELTNVGLQAI--LDACPHLESLDLRQCFNVNLVGKL 235
            N ++   +      D C  L+ L +       + G +
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGN---KISGDV 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 17/128 (13%), Positives = 45/128 (35%), Gaps = 15/128 (11%)

Query: 110 NLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNN 169
           +L  + L +  N++D      I+    +++L ++    +      +  L   L   ++  
Sbjct: 45  SLTYITLANI-NVTD---LTGIEYAHNIKDLTINNIHATN--YNPISGL-SNLERLRIMG 97

Query: 170 RGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNV 229
           +      +   D    +   +  L  L +  +   +  L   ++  P + S+DL     +
Sbjct: 98  K-----DVT-SDKIPNL-SGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAI 149

Query: 230 NLVGKLGK 237
             +  L  
Sbjct: 150 TDIMPLKT 157

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 9/128 (7%)

Query: 100 LLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLC 159
                +       +L+ +               G   LE L+  + +L Q +  +V    
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420

Query: 160 PLLRSFKL-NNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHL 218
             L    + +           +         +  L  L++ GN      L  I     +L
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFN--------GLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 219 ESLDLRQC 226
             LDL QC
Sbjct: 473 TFLDLSQC 480

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 20/145 (13%)

Query: 109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPL--LRSFK 166
             L+ L L S          EA +  P L  L+L    +    L    +   L  L   +
Sbjct: 48  EQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYF--LHP-DAFQGLFHLFELR 103

Query: 167 L-NNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQ 225
           L          +           N+  L  L L  N++ ++ L         L+S+D   
Sbjct: 104 LYFCG------LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 226 CFNVNLVGKLGKICAERIRDLRHPN 250
                   ++  +C   +  L+   
Sbjct: 158 N-------QIFLVCEHELEPLQGKT 175

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 3/116 (2%)

Query: 111 LRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKL-NN 169
           +      S Y    +    +      L ++EL  C    +  + +  L P L+S  +  N
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQSLNIACN 525

Query: 170 RGHRCPKIECDDDA-KAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLR 224
           RG    +++ D        +    ++   +  N L      A L     L  LD  
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 14/140 (10%)

Query: 88  LSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSL 147
           +S         EL Q++      L+ L +      S    CE ++ FP L  L+LS    
Sbjct: 131 VSWATRDAWLAELQQWL---KPGLKVLSIA--QAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 148 SQEALEAVGSLC----PLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNEL 203
             E    + +LC    P L+   L N G   P   C     A+A     L+ L L  N L
Sbjct: 186 LGE-RGLISALCPLKFPTLQVLALRNAGMETPSGVC----SALAAARVQLQGLDLSHNSL 240

Query: 204 TNVGLQAILDACPHLESLDL 223
            +       D    L SL+L
Sbjct: 241 RDAAGAPSCDWPSQLNSLNL 260

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 18/129 (13%), Positives = 36/129 (27%), Gaps = 13/129 (10%)

Query: 101 LQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCP 160
               +       +LR +               G   L+ L+  + +L +  +    +   
Sbjct: 365 SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR--VTEFSAFLS 422

Query: 161 L--LRSFKL-NNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPH 217
           L  L    +                       +  L  L++ GN   +  L  +     +
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFL--------GLTSLNTLKMAGNSFKDNTLSNVFANTTN 474

Query: 218 LESLDLRQC 226
           L  LDL +C
Sbjct: 475 LTFLDLSKC 483

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 21/116 (18%)

Query: 110 NLRNLRLVSCYN--ISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKL 167
           NL NL  ++ +N  I+D    + +K    L  LELS  ++S   + A+  L   L+    
Sbjct: 110 NLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD--ISALSGL-TSLQQLSF 163

Query: 168 NNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDL 223
            N+      +           N+  L  L +  N+++++   ++L    +LESL  
Sbjct: 164 GNQVTDLKPL----------ANLTTLERLDISSNKVSDI---SVLAKLTNLESLIA 206

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 22/115 (19%), Positives = 46/115 (40%), Gaps = 20/115 (17%)

Query: 110 NLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKL-N 168
            + +L L + +N+SD      +     L  L ++   +    +  + +L   L S  L  
Sbjct: 133 KMYSLNLGANHNLSD---LSPLSNMTGLNYLTVTESKVKD--VTPIANL-TDLYSLSLNY 186

Query: 169 NRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDL 223
           N+      IE   D   +A ++  L +   + N++T++     +     L SL +
Sbjct: 187 NQ------IE---DISPLA-SLTSLHYFTAYVNQITDI---TPVANMTRLNSLKI 228

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 6/115 (5%)

Query: 110 NLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKL-N 168
              N      Y   D            L ++E+  C    +    + +L P ++   +  
Sbjct: 228 ENENSEYAQQYKTED----LKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVAC 282

Query: 169 NRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDL 223
           NRG    +++ D  A A A     ++ + +  N L    ++  L     L  L+ 
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLEC 337

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.6
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.55
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.49
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.48
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.47
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.42
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.22
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.19
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.17
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.16
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.11
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.1
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.03
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.02
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.01
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.01
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.01
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.0
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.99
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.98
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.98
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.95
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.93
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.88
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.88
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.88
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.87
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.83
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.83
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.81
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.8
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.8
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.77
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.75
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.73
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.73
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.7
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.7
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.69
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.69
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.69
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.67
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.66
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.66
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.65
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.65
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.62
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.6
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.6
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.59
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.59
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.59
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.57
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.57
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.57
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.55
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.53
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.51
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.51
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.49
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.47
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.46
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.42
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.36
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.34
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.34
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.31
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.25
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.22
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.2
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.04
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.03
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.98
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.96
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.95
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.9
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.89
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.83
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.82
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.82
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.71
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.64
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.59
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.43
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.28
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.02
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.7
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.31
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.22
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	84.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	84.0
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	82.73
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	82.63

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.97  E-value=5.4e-30  Score=221.52  Aligned_cols=259  Identities=19%  Similarity=0.236  Sum_probs=200.5

Q ss_pred             cCCCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHHh------
Q 021667            8 QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVD------   81 (309)
Q Consensus         8 ~~~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~------   81 (309)
                      .+...|++||+|+|.+||+||+..|+. +++.|||+|++++.+|.+|++++++...   .....+..+....+.      
T Consensus         4 ~~~~~~~~LP~eil~~If~~L~~~d~~-~~~~vc~~W~~~~~~~~~~~~l~l~~~~---~~~~~~~~~~~~~l~~L~l~~   79 (336)
T 2ast_B            4 FPGVSWDSLPDELLLGIFSCLCLPELL-KVSGVCKRWYRLASDESLWQTLDLTGKN---LHPDVTGRLLSQGVIAFRCPR   79 (336)
T ss_dssp             ---CCSSSSCHHHHHHHHTTSCHHHHH-HTTSSCHHHHHHHTCSTTSSEEECTTCB---CCHHHHHHHHHTTCSEEECTT
T ss_pred             cccCChhhCCHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHhcCchhheeecccccc---CCHHHHHhhhhccceEEEcCC
Confidence            456789999999999999999999995 9999999999999999999999998754   333333332211110      


Q ss_pred             ----------ccCCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCH
Q 021667           82 ----------RSNGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQ  149 (309)
Q Consensus        82 ----------~~~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~  149 (309)
                                ...++++.++++. .+++..+..+...+++|++|++.++ .+++.....+. .+++|++|++++| .+++
T Consensus        80 n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~  157 (336)
T 2ast_B           80 SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSE  157 (336)
T ss_dssp             CEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBSCCH
T ss_pred             ccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHh-cCCCCCEEECCCCCCCCH
Confidence                      1136788888854 5666667777788999999999977 67776666554 4999999999999 8998


Q ss_pred             HHHHHHHhcCCCCcEEEeccC-CCCCCCcccchhHHHHHhcCC-CCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCC
Q 021667          150 EALEAVGSLCPLLRSFKLNNR-GHRCPKIECDDDAKAIAENMH-GLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQ  225 (309)
Q Consensus       150 ~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~  225 (309)
                      .++..+...+++|++|++++| .+.      +..+......++ +|++|++++|  .+++.++..++..+++|++|++++
T Consensus       158 ~~l~~~~~~~~~L~~L~l~~~~~l~------~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~  231 (336)
T 2ast_B          158 FALQTLLSSCSRLDELNLSWCFDFT------EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  231 (336)
T ss_dssp             HHHHHHHHHCTTCCEEECCCCTTCC------HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             HHHHHHHhcCCCCCEEcCCCCCCcC------hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence            888888888999999999875 332      444555556899 9999999999  788888888888999999999999


Q ss_pred             CCCcCc-hhHHHHHhHhccCceecCCCC-CCchhhhhhhhhhccCCcCCCCCCCCccccCCCC
Q 021667          226 CFNVNL-VGKLGKICAERIRDLRHPNDS-THDYEFGADFQDFCWSSVEDYPSGISDIELVSDE  286 (309)
Q Consensus       226 c~~~~~-~~~l~~~~~~~L~~L~l~~~~-~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d~  286 (309)
                      |..+++ .......++ +|++|++++|. +++.++..+.     ..+.|+.+++++|  +++.
T Consensus       232 ~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~--i~~~  286 (336)
T 2ast_B          232 SVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELG-----EIPTLKTLQVFGI--VPDG  286 (336)
T ss_dssp             CTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGG-----GCTTCCEEECTTS--SCTT
T ss_pred             CCcCCHHHHHHHhCCC-CCCEeeCCCCCCCCHHHHHHHh-----cCCCCCEEeccCc--cCHH
Confidence            986654 222334567 99999999995 7888887775     5678888999988  5553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=7.6e-25  Score=203.22  Aligned_cols=251  Identities=18%  Similarity=0.199  Sum_probs=131.0

Q ss_pred             CCCCCCCcHHHHHHHhccCC-hhhhhhhhhhhcHHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHHhccCCCce
Q 021667           10 SCDWTQLPADVTSTILSKIG-AIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLL   88 (309)
Q Consensus        10 ~~~~~~LP~eiL~~If~~L~-~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   88 (309)
                      .+.|++||+|||.+||+||+ .+++. ++++|||+|+++.  +..|+++++..+...  ..   ....     ...++++
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~-~~s~vck~W~~~~--~~~~~~l~~~~~~~~--~~---~~~~-----~~~~~L~   69 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRN-SVSLVCKSWYEIE--RWCRRKVFIGNCYAV--SP---ATVI-----RRFPKVR   69 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHH-HHHTSCHHHHHHH--HHHCCEEEESSTTSS--CH---HHHH-----HHCTTCC
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHH-HHHHHHHHHHHhh--hhhceEEeecccccc--CH---HHHH-----hhCCCce
Confidence            47899999999999999999 99995 9999999999983  344666666554321  00   0111     1134445


Q ss_pred             EEecccc--C-------------ChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHH
Q 021667           89 SINIEYF--G-------------TDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEAL  152 (309)
Q Consensus        89 ~l~l~~~--~-------------~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~  152 (309)
                      .+++...  .             ....+..+...+++|++|++.++ .+++..+..+.+.+++|++|+|.+| .+++.++
T Consensus        70 ~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l  148 (594)
T 2p1m_B           70 SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGL  148 (594)
T ss_dssp             EEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHH
T ss_pred             EEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHH
Confidence            5444220  0             11223334444555555555544 3555555444444555555555555 4444445


Q ss_pred             HHHHhcCCCCcEEEeccCCCCCCC------------------------cccchhHHHHHhcCCCCcEEEecCCccChHHH
Q 021667          153 EAVGSLCPLLRSFKLNNRGHRCPK------------------------IECDDDAKAIAENMHGLRHLQLFGNELTNVGL  208 (309)
Q Consensus       153 ~~l~~~~~~L~~L~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l  208 (309)
                      ..+...|++|++|++.+|.+....                        ......+..+...+++|++|++.+| ....++
T Consensus       149 ~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~l  227 (594)
T 2p1m_B          149 AAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA-VPLEKL  227 (594)
T ss_dssp             HHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT-SCHHHH
T ss_pred             HHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC-CcHHHH
Confidence            555545555555555543322110                        0112334444444555555555555 111224


Q ss_pred             HHHHHhCCCCCeeecCCCCC----------------------------cCc--hhHHHHHhHhccCceecCCCCCCchhh
Q 021667          209 QAILDACPHLESLDLRQCFN----------------------------VNL--VGKLGKICAERIRDLRHPNDSTHDYEF  258 (309)
Q Consensus       209 ~~l~~~~~~L~~L~l~~c~~----------------------------~~~--~~~l~~~~~~~L~~L~l~~~~~~d~~~  258 (309)
                      ..++..+++|++|++..|..                            ...  ...+...++ +|++|++++|.+++.++
T Consensus       228 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~l~~~~l  306 (594)
T 2p1m_B          228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS-RLTTLNLSYATVQSYDL  306 (594)
T ss_dssp             HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT-TCCEEECTTCCCCHHHH
T ss_pred             HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC-CCCEEEccCCCCCHHHH
Confidence            44555555555555433321                            000  223334567 88888888888877776


Q ss_pred             hhhhhhhccCCcCCCCCCCCcc
Q 021667          259 GADFQDFCWSSVEDYPSGISDI  280 (309)
Q Consensus       259 ~~~~~~~c~~~~~l~~~~~s~~  280 (309)
                      .... .   .++.|+.++++++
T Consensus       307 ~~~~-~---~~~~L~~L~l~~~  324 (594)
T 2p1m_B          307 VKLL-C---QCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHH-T---TCTTCCEEEEEGG
T ss_pred             HHHH-h---cCCCcCEEeCcCc
Confidence            6544 2   4467777788776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.89  E-value=1.9e-22  Score=187.11  Aligned_cols=197  Identities=19%  Similarity=0.268  Sum_probs=107.0

Q ss_pred             CCCCcHHHHHHHhccC-ChhhhhhhhhhhcHHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHHhccCCCceEEe
Q 021667           13 WTQLPADVTSTILSKI-GAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSIN   91 (309)
Q Consensus        13 ~~~LP~eiL~~If~~L-~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~   91 (309)
                      ..+||+|+|.+||+|| +.+++. +++.|||+|+++..  ..++.+.+..+.     ......+.     ...+++++++
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~-~~s~vck~W~~~~~--~~~~~l~~~~~~-----~~~~~~~~-----~~~~~L~~L~   79 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRD-SASLVCRRWFKIDS--ETREHVTMALCY-----TATPDRLS-----RRFPNLRSLK   79 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHH-HHTTSCHHHHHHHH--HHCCEEEESCGG-----GSCHHHHH-----HHCTTCSEEE
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHH-HHHHHhHHHHHhhh--ccccEEEEeecc-----ccChHHHH-----HhCCCCeEEE
Confidence            3489999999999999 899995 99999999999853  123334333211     00111111     1234455555


Q ss_pred             ccc---------------cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCC-cCEEEecCC-CCCHHHHHH
Q 021667           92 IEY---------------FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPL-LEELELSYC-SLSQEALEA  154 (309)
Q Consensus        92 l~~---------------~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~L~~~-~~~~~~~~~  154 (309)
                      +..               ......+..+...+++|++|+|.++ .+++..+..+...+++ |++|+|++| .+++.++..
T Consensus        80 L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~  158 (592)
T 3ogk_B           80 LKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLS  158 (592)
T ss_dssp             EECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHH
T ss_pred             ecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHH
Confidence            521               1122334445555666666666654 4555555555544444 666666655 345555555


Q ss_pred             HHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccC---hHHHHHHHHhCCCCCeeecCCC
Q 021667          155 VGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELT---NVGLQAILDACPHLESLDLRQC  226 (309)
Q Consensus       155 l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~---~~~l~~l~~~~~~L~~L~l~~c  226 (309)
                      +...||+|++|++.++.+...   ....+..+...+++|++|+++++.++   ..++..++..|++|+.|++++|
T Consensus       159 ~~~~~~~L~~L~L~~~~~~~~---~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          159 IVTHCRKIKTLLMEESSFSEK---DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             HHHHCTTCSEEECTTCEEECC---CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             HHhhCCCCCEEECccccccCc---chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence            555566666666655433211   01113334445555555555555333   4455555555555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.72  E-value=1.7e-16  Score=147.08  Aligned_cols=196  Identities=18%  Similarity=0.204  Sum_probs=136.4

Q ss_pred             ccCCCceEEeccccCChHHHHHHHhcCCCccEEEeCC----------CCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHH
Q 021667           82 RSNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVS----------CYNISDQGFCEAIKGFPLLEELELSYCSLSQEA  151 (309)
Q Consensus        82 ~~~~~l~~l~l~~~~~~~~l~~l~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  151 (309)
                      ..+++++.|++...+++..+..++..+++|++|++.+          |..+++.++..+...+++|++|++..+.+++..
T Consensus       315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~  394 (592)
T 3ogk_B          315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES  394 (592)
T ss_dssp             TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH
T ss_pred             HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH
Confidence            4578899998887778888888888899999999995          778888888888888999999999777888888


Q ss_pred             HHHHHhcCCCCcEEEeccCCCCCCCcc---cchhHHHHHhcCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCC
Q 021667          152 LEAVGSLCPLLRSFKLNNRGHRCPKIE---CDDDAKAIAENMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQC  226 (309)
Q Consensus       152 ~~~l~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~l~~~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c  226 (309)
                      +..++..+++|++|++.++. .+..++   .+.++..+...+++|++|+++.|  .+++.++..+...+++|+.|++++|
T Consensus       395 ~~~l~~~~~~L~~L~l~~~~-~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n  473 (592)
T 3ogk_B          395 LESIGTYLKNLCDFRLVLLD-REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV  473 (592)
T ss_dssp             HHHHHHHCCSCCEEEEEECS-CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred             HHHHHhhCCCCcEEEEeecC-CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence            88888888999999986422 011111   12345555556777777777654  3666666666666777777777665


Q ss_pred             CCcCc--hhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          227 FNVNL--VGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       227 ~~~~~--~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      . +++  ...+...++ +|++|++++|++++.+...+. .   ..+.++.+++++|. +++
T Consensus       474 ~-l~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~-~---~l~~L~~L~ls~n~-it~  527 (592)
T 3ogk_B          474 G-ESDEGLMEFSRGCP-NLQKLEMRGCCFSERAIAAAV-T---KLPSLRYLWVQGYR-ASM  527 (592)
T ss_dssp             C-SSHHHHHHHHTCCT-TCCEEEEESCCCBHHHHHHHH-H---HCSSCCEEEEESCB-CCT
T ss_pred             C-CCHHHHHHHHhcCc-ccCeeeccCCCCcHHHHHHHH-H---hcCccCeeECcCCc-CCH
Confidence            5 332  234444555 677777777776666665554 2   23456666666666 444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=9.2e-16  Score=142.13  Aligned_cols=178  Identities=18%  Similarity=0.187  Sum_probs=100.4

Q ss_pred             cCCCceEEeccccCChHHHHHHHhcCCCccEEEe--------CCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHH
Q 021667           83 SNGQLLSINIEYFGTDELLQYIANRSRNLRNLRL--------VSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEA  154 (309)
Q Consensus        83 ~~~~l~~l~l~~~~~~~~l~~l~~~~~~L~~L~l--------~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  154 (309)
                      .+++|+.|++...+++..+..++..+++|++|++        ..+..+++.++..+...+++|++|.+..+.+++.++..
T Consensus       312 ~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~  391 (594)
T 2p1m_B          312 QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT  391 (594)
T ss_dssp             TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHH
T ss_pred             cCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHH
Confidence            3566777776555556666666666777777776        23456666666666666666666666555666666666


Q ss_pred             HHhcCCCCcEEEeccCCC-CCCCc---------------------------ccchhHHHHHhcCCCCcEEEecCCccChH
Q 021667          155 VGSLCPLLRSFKLNNRGH-RCPKI---------------------------ECDDDAKAIAENMHGLRHLQLFGNELTNV  206 (309)
Q Consensus       155 l~~~~~~L~~L~l~~~~~-~~~~~---------------------------~~~~~~~~l~~~~~~L~~L~l~~~~i~~~  206 (309)
                      ++..+|+|+.|++..++. .+..+                           ..+..+..+...+++|++|++++|.+++.
T Consensus       392 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~  471 (594)
T 2p1m_B          392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDL  471 (594)
T ss_dssp             HHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred             HHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence            665666666666651110 00100                           11333344443455666666666666666


Q ss_pred             HHHHHHHhCCCCCeeecCCCCCcCc--hhHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667          207 GLQAILDACPHLESLDLRQCFNVNL--VGKLGKICAERIRDLRHPNDSTHDYEFGADF  262 (309)
Q Consensus       207 ~l~~l~~~~~~L~~L~l~~c~~~~~--~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~  262 (309)
                      ++..++..|++|+.|++++|.. ++  ...+...++ +|+.|++++|++++.|...+.
T Consensus       472 ~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~  527 (594)
T 2p1m_B          472 GMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLE-TMRSLWMSSCSVSFGACKLLG  527 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGG-GSSEEEEESSCCBHHHHHHHH
T ss_pred             HHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCC-CCCEEeeeCCCCCHHHHHHHH
Confidence            6666555566666666666654 32  112333455 666666666666665555553

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=9e-16  Score=132.15  Aligned_cols=165  Identities=15%  Similarity=0.140  Sum_probs=139.1

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccC-CCCCCCcccchhHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNR-GHRCPKIECDDDAKA  185 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~  185 (309)
                      .+++|++|+++++ .++..++..++..+++|++|+|++|.+++.....+.. +++|++|++++| .+      .+..+..
T Consensus        91 ~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l------~~~~l~~  162 (336)
T 2ast_B           91 SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGF------SEFALQT  162 (336)
T ss_dssp             CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSC------CHHHHHH
T ss_pred             cCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCC------CHHHHHH
Confidence            4789999999977 5888888888999999999999999999887777765 999999999975 22      2445666


Q ss_pred             HHhcCCCCcEEEecCC-ccChHHHHHHHHhCC-CCCeeecCCCC-CcCc--hhHHHHHhHhccCceecCCCC-CCchhhh
Q 021667          186 IAENMHGLRHLQLFGN-ELTNVGLQAILDACP-HLESLDLRQCF-NVNL--VGKLGKICAERIRDLRHPNDS-THDYEFG  259 (309)
Q Consensus       186 l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~-~L~~L~l~~c~-~~~~--~~~l~~~~~~~L~~L~l~~~~-~~d~~~~  259 (309)
                      +...+++|++|++++| .+++.++..++..++ +|++|++++|. .+++  .......++ +|++|++++|. +++.+..
T Consensus       163 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~  241 (336)
T 2ast_B          163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP-NLVHLDLSDSVMLKNDCFQ  241 (336)
T ss_dssp             HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT-TCSEEECTTCTTCCGGGGG
T ss_pred             HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC-CCCEEeCCCCCcCCHHHHH
Confidence            5669999999999999 999998888899999 99999999996 4553  445667788 99999999999 8988888


Q ss_pred             hhhhhhccCCcCCCCCCCCccccCCC
Q 021667          260 ADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       260 ~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      .+.     ..+.++.+++++|..+++
T Consensus       242 ~l~-----~l~~L~~L~l~~~~~~~~  262 (336)
T 2ast_B          242 EFF-----QLNYLQHLSLSRCYDIIP  262 (336)
T ss_dssp             GGG-----GCTTCCEEECTTCTTCCG
T ss_pred             HHh-----CCCCCCEeeCCCCCCCCH
Confidence            776     567899999999975555

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.60  E-value=2.6e-14  Score=128.36  Aligned_cols=187  Identities=18%  Similarity=0.176  Sum_probs=88.2

Q ss_pred             CceEEeccc-cCChHH---HHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhc----CCCcCEEEecCCCCCHHHHHHH--
Q 021667           86 QLLSINIEY-FGTDEL---LQYIANRSRNLRNLRLVSCYNISDQGFCEAIKG----FPLLEELELSYCSLSQEALEAV--  155 (309)
Q Consensus        86 ~l~~l~l~~-~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~~~~~~~~l--  155 (309)
                      .+++|++.. .+++..   +......+++|++|+++++ .+++.++..+...    .++|++|++++|.+++.+...+  
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            455666532 333322   2222334556666666544 3554444443332    2356666666665554332222  


Q ss_pred             -HhcCCCCcEEEeccCCCCCCCcccchhHHHHH----hcCCCCcEEEecCCccChHHH---HHHHHhCCCCCeeecCCCC
Q 021667          156 -GSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA----ENMHGLRHLQLFGNELTNVGL---QAILDACPHLESLDLRQCF  227 (309)
Q Consensus       156 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~----~~~~~L~~L~l~~~~i~~~~l---~~l~~~~~~L~~L~l~~c~  227 (309)
                       ...+++|++|+++++.+.      +..+..+.    ...++|++|++++|.+++.++   ...+..+++|++|++++|.
T Consensus       165 ~l~~~~~L~~L~L~~n~i~------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          165 VLRAKPDFKELTVSNNDIN------EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHCTTCCEEECCSSBCH------HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHhhCCCCCEEECcCCCcc------hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence             233556666666543321      22222222    234466666666666655442   2233345666666666654


Q ss_pred             CcCc-hhHHHH----HhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccc
Q 021667          228 NVNL-VGKLGK----ICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIE  281 (309)
Q Consensus       228 ~~~~-~~~l~~----~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~  281 (309)
                      .... ...+..    .++ +|++|++++|.+++.+...+. +.-...+.++.++++++.
T Consensus       239 l~~~~~~~l~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSS-RLRTLWIWECGITAKGCGDLC-RVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTC-CCCEEECTTSCCCHHHHHHHH-HHHHHCTTCCEEECTTCC
T ss_pred             CChHHHHHHHHHHhcCCC-CceEEECcCCCCCHHHHHHHH-HHHhhCCCcceEECCCCC
Confidence            2221 111211    234 666666666666665544443 111124456666666554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.58  E-value=2.5e-13  Score=119.23  Aligned_cols=144  Identities=15%  Similarity=0.148  Sum_probs=85.7

Q ss_pred             CCccEEEeCCCCCCCHHHHH---HHHhcCCCcCEEEecCCCCCHHHHHHHHh----cCCCCcEEEeccCCCCCCCcccch
Q 021667          109 RNLRNLRLVSCYNISDQGFC---EAIKGFPLLEELELSYCSLSQEALEAVGS----LCPLLRSFKLNNRGHRCPKIECDD  181 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~~~~~  181 (309)
                      ++|++|+++++ .+++.++.   ..+..+++|++|+|++|.+++.++..+..    .+++|+.|+++++.+...   ...
T Consensus       159 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~---g~~  234 (386)
T 2ca6_A          159 PPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL---GSS  234 (386)
T ss_dssp             CCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH---HHH
T ss_pred             CCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH---HHH
Confidence            66777777654 45544444   33445667777777777776665444433    566777777765433200   001


Q ss_pred             hHHHHHhcCCCCcEEEecCCccChHHHHHHHHh-----CCCCCeeecCCCCCcCc----hh-HHHHHhHhccCceecCCC
Q 021667          182 DAKAIAENMHGLRHLQLFGNELTNVGLQAILDA-----CPHLESLDLRQCFNVNL----VG-KLGKICAERIRDLRHPND  251 (309)
Q Consensus       182 ~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~-----~~~L~~L~l~~c~~~~~----~~-~l~~~~~~~L~~L~l~~~  251 (309)
                      .+......+++|++|+|++|.+++.+...+...     +++|++|+|++|.....    .. .+...++ +|+.|++++|
T Consensus       235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~-~L~~L~l~~N  313 (386)
T 2ca6_A          235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP-DLLFLELNGN  313 (386)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT-TCCEEECTTS
T ss_pred             HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC-CceEEEccCC
Confidence            122223467788888888887777766555443     67788888877765442    22 2224456 7888888888


Q ss_pred             CCCchh
Q 021667          252 STHDYE  257 (309)
Q Consensus       252 ~~~d~~  257 (309)
                      ++++.+
T Consensus       314 ~l~~~~  319 (386)
T 2ca6_A          314 RFSEED  319 (386)
T ss_dssp             BSCTTS
T ss_pred             cCCcch
Confidence            876655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=4.9e-14  Score=126.50  Aligned_cols=190  Identities=17%  Similarity=0.143  Sum_probs=119.3

Q ss_pred             CCCceEEecc-ccCChHHHHH---HHhcCCCccEEEeCCCCCCCHHHHHHHHhcCC----CcCEEEecCCCCCHHHHH--
Q 021667           84 NGQLLSINIE-YFGTDELLQY---IANRSRNLRNLRLVSCYNISDQGFCEAIKGFP----LLEELELSYCSLSQEALE--  153 (309)
Q Consensus        84 ~~~l~~l~l~-~~~~~~~l~~---l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~L~~~~~~~~~~~--  153 (309)
                      .++++.+++. ..+++.....   ....+++|++|+++++ .+++.++..+...++    +|++|+|++|.+++.+..  
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l  105 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL  105 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence            4677888874 3566554333   3334788888888864 677777777777665    688888888877764433  


Q ss_pred             -HHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh----cCCCCcEEEecCCccChHHH---HHHHHhCCCCCeeecCC
Q 021667          154 -AVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE----NMHGLRHLQLFGNELTNVGL---QAILDACPHLESLDLRQ  225 (309)
Q Consensus       154 -~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~i~~~~l---~~l~~~~~~L~~L~l~~  225 (309)
                       .....+++|++|+++++.+.      +..+..+..    ..++|++|++++|.+++.+.   ...+..+++|++|++++
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~------~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  179 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLG------DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN  179 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCH------HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHccCCceeEEECCCCcCc------hHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence             33455778888888764432      333333332    35578888888887776553   33445578888888888


Q ss_pred             CCCcCc-hhHHHHH----hHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          226 CFNVNL-VGKLGKI----CAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       226 c~~~~~-~~~l~~~----~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      |..... ...+...    .+ +|++|++++|.+++.+...+. ..-...+.++.++++++..
T Consensus       180 n~i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          180 NDINEAGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDLC-GIVASKASLRELALGSNKL  239 (461)
T ss_dssp             SBCHHHHHHHHHHHHHHSCC-CCCEEECTTSCCBTTHHHHHH-HHHHHCTTCCEEECCSSBC
T ss_pred             CCcchHHHHHHHHHHhcCCC-CceEEEccCCCCcHHHHHHHH-HHHHhCCCccEEeccCCcC
Confidence            763322 2222222    33 788888888888777655444 1111455677788877743

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.55  E-value=3.3e-13  Score=118.43  Aligned_cols=222  Identities=14%  Similarity=0.103  Sum_probs=148.8

Q ss_pred             CCCceeecCCCCCCccc---chhHHHHHHHHHhccCCCceEEeccc-cCChHH---HHHHHhcCCCccEEEeCCCCCCCH
Q 021667           52 AMWRNIDMHNLGDLWDM---DHDLEKMCRHAVDRSNGQLLSINIEY-FGTDEL---LQYIANRSRNLRNLRLVSCYNISD  124 (309)
Q Consensus        52 ~l~~~i~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~  124 (309)
                      .-.+.+++..+..-...   +..+..+....  ..+++|+.|+++. .+++..   +......+++|++|+|+++ .++.
T Consensus        60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l--~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~  136 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQAL--LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGP  136 (386)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHH--TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHH
T ss_pred             CCccEEeCcccccCccccchhHHHHHHHHHH--hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCH
Confidence            34578888765311011   12333333222  2368999999964 555532   3333456999999999976 6665


Q ss_pred             HHHHHH---HhcC---------CCcCEEEecCCCCCHHHHHHH---HhcCCCCcEEEeccCCCCCCCcccchhHHHHH--
Q 021667          125 QGFCEA---IKGF---------PLLEELELSYCSLSQEALEAV---GSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA--  187 (309)
Q Consensus       125 ~~~~~~---~~~~---------~~L~~L~L~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~--  187 (309)
                      .+...+   +..+         ++|++|+|++|.+++.++..+   ...+++|++|+++++.+.      +.++..+.  
T Consensus       137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~------~~g~~~l~~~  210 (386)
T 2ca6_A          137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR------PEGIEHLLLE  210 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC------HHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC------HhHHHHHHHH
Confidence            554433   3334         999999999999986666643   347899999999976543      33433332  


Q ss_pred             --hcCCCCcEEEecCCccChHHHHHH---HHhCCCCCeeecCCCCCcCc-hhHHHHH-----hHhccCceecCCCCCCch
Q 021667          188 --ENMHGLRHLQLFGNELTNVGLQAI---LDACPHLESLDLRQCFNVNL-VGKLGKI-----CAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       188 --~~~~~L~~L~l~~~~i~~~~l~~l---~~~~~~L~~L~l~~c~~~~~-~~~l~~~-----~~~~L~~L~l~~~~~~d~  256 (309)
                        ..+++|++|+|++|.+++.+...+   +..+++|++|+|++|..... ...+...     ++ +|++|+|++|.+++.
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~-~L~~L~L~~n~i~~~  289 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLRLQYNEIELD  289 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC-CCCEEECCSSCCBHH
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCC-CeEEEECcCCcCCHH
Confidence              389999999999999998766555   45689999999999874432 1122222     56 899999999999997


Q ss_pred             hhhhhhhhhccCCcCCCCCCCCccccC
Q 021667          257 EFGADFQDFCWSSVEDYPSGISDIELV  283 (309)
Q Consensus       257 ~~~~~~~~~c~~~~~l~~~~~s~~~~~  283 (309)
                      |+..+........+.+..++++++...
T Consensus       290 g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          290 AVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            776654222123567777887777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.55  E-value=1.1e-13  Score=120.49  Aligned_cols=171  Identities=17%  Similarity=0.143  Sum_probs=133.0

Q ss_pred             CCCceEEecc-ccCChHHHHHHHhc----CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHh-
Q 021667           84 NGQLLSINIE-YFGTDELLQYIANR----SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGS-  157 (309)
Q Consensus        84 ~~~l~~l~l~-~~~~~~~l~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-  157 (309)
                      .+.++.+++. +.+++.....++..    +++|++|+|+++ .+++.++..+...+++|++|+|++|.+++.+...++. 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            5678999995 46777666555443    469999999976 7899999888888899999999999999988877654 


Q ss_pred             ---cCCCCcEEEeccCCCCCCCcccchhHHHH---HhcCCCCcEEEecCCccChHHHHHHH---HhCCCCCeeecCCCCC
Q 021667          158 ---LCPLLRSFKLNNRGHRCPKIECDDDAKAI---AENMHGLRHLQLFGNELTNVGLQAIL---DACPHLESLDLRQCFN  228 (309)
Q Consensus       158 ---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~  228 (309)
                         .+++|++|++++|.+.      +.+...+   ...+++|++|+|++|.+++.++..+.   ..+++|+.|+|++|..
T Consensus       150 L~~~~~~L~~L~Ls~n~l~------~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLT------AAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCH------HHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHhcCCccceeeCCCCCCC------hHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence               4688999999986553      3333333   23789999999999999998877665   3467899999999865


Q ss_pred             cCc-hhHHH---HHhHhccCceecCCCCCCchhhhhhh
Q 021667          229 VNL-VGKLG---KICAERIRDLRHPNDSTHDYEFGADF  262 (309)
Q Consensus       229 ~~~-~~~l~---~~~~~~L~~L~l~~~~~~d~~~~~~~  262 (309)
                      ... ...+.   ..++ +|++|+|++|.+++.|...+.
T Consensus       224 ~~~g~~~l~~~L~~~~-~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          224 GDTAALALARAAREHP-SLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             CHHHHHHHHHHHHHCS-SCCEEECTTSSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCC-CCCEEeccCCCCCHHHHHHHH
Confidence            432 12232   3456 899999999999999999887

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.49  E-value=5.1e-13  Score=116.21  Aligned_cols=17  Identities=12%  Similarity=0.094  Sum_probs=8.1

Q ss_pred             ccCceecCCCCCCchhh
Q 021667          242 RIRDLRHPNDSTHDYEF  258 (309)
Q Consensus       242 ~L~~L~l~~~~~~d~~~  258 (309)
                      +|++|+|++|.+++.+.
T Consensus       226 ~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          226 HVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             TCCEEECCSSCCCCCCH
T ss_pred             CceEEECcCCCCCcHHH
Confidence            44444554444444444

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.48  E-value=1.9e-14  Score=88.30  Aligned_cols=50  Identities=26%  Similarity=0.683  Sum_probs=40.0

Q ss_pred             cCCCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceee
Q 021667            8 QESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNID   58 (309)
Q Consensus         8 ~~~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~   58 (309)
                      .+...|..||+|++.+||+||+.+++. ++++|||+|+.++.++.+|+.++
T Consensus         4 ~~~~~~~~LP~eil~~I~~~L~~~dl~-~~~~Vck~w~~~~~~~~lW~~ld   53 (53)
T 1fs1_A            4 FPGVSWDSLPDELLLGIFSCLCLPELL-KVSGVCKRWYRLASDESLWQTLD   53 (53)
T ss_dssp             -----CCSSCHHHHHHHHTTSCGGGHH-HHHTTCHHHHHHHTCGGGC----
T ss_pred             CCCCCHHHCCHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhCChHHHHhcC
Confidence            456789999999999999999999996 99999999999999999999874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.47  E-value=1.3e-13  Score=120.18  Aligned_cols=166  Identities=16%  Similarity=0.125  Sum_probs=128.6

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhc----CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKG----FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDA  183 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~  183 (309)
                      .+.|++|+++++ .++..++..+...    +++|++|+|++|.+++.++..++..+++|+.|++++|.+.      +..+
T Consensus        71 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~------~~~~  143 (372)
T 3un9_A           71 LSSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG------PEAC  143 (372)
T ss_dssp             HTTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC------HHHH
T ss_pred             HhhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC------HHHH
Confidence            468999999976 7887776655443    3699999999999999999988888899999999986554      4444


Q ss_pred             HHHH----hcCCCCcEEEecCCccChHHHHHHH---HhCCCCCeeecCCCCCcCc-hhHHH---HHhHhccCceecCCCC
Q 021667          184 KAIA----ENMHGLRHLQLFGNELTNVGLQAIL---DACPHLESLDLRQCFNVNL-VGKLG---KICAERIRDLRHPNDS  252 (309)
Q Consensus       184 ~~l~----~~~~~L~~L~l~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~~~~-~~~l~---~~~~~~L~~L~l~~~~  252 (309)
                      ..+.    ...++|++|+|++|.+++.+...+.   ..+++|++|+|++|..... ...+.   ...+ +|++|+|++|.
T Consensus       144 ~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~-~L~~L~Ls~N~  222 (372)
T 3un9_A          144 KDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR-QLQELNVAYNG  222 (372)
T ss_dssp             HHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS-CCCEEECCSSC
T ss_pred             HHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC-CcCeEECCCCC
Confidence            4443    3578999999999999988876664   5688999999999874332 12222   3445 89999999999


Q ss_pred             CCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          253 THDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       253 ~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      +++.|...+. ......+.+..+|++++..
T Consensus       223 i~~~g~~~l~-~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          223 AGDTAALALA-RAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             CCHHHHHHHH-HHHHHCSSCCEEECTTSSC
T ss_pred             CCHHHHHHHH-HHHHhCCCCCEEeccCCCC
Confidence            9999988876 3333456788999998864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.42  E-value=1.7e-12  Score=112.88  Aligned_cols=196  Identities=13%  Similarity=0.051  Sum_probs=129.8

Q ss_pred             CCCceEEeccc-cCChHHH---HHHHhcCC-CccEEEeCCCCCCCHH---HHHHHHhcC-CCcCEEEecCCCCCHHHHH-
Q 021667           84 NGQLLSINIEY-FGTDELL---QYIANRSR-NLRNLRLVSCYNISDQ---GFCEAIKGF-PLLEELELSYCSLSQEALE-  153 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l---~~l~~~~~-~L~~L~l~~~~~~~~~---~~~~~~~~~-~~L~~L~L~~~~~~~~~~~-  153 (309)
                      ...++.|+++. .+++...   ......++ +|++|+|+++ .+++.   .+..++... ++|++|+|++|.+++.... 
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~   99 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE   99 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence            45599999964 3444333   23334577 9999999976 66644   344444444 9999999999977654433 


Q ss_pred             --HHHhcC-CCCcEEEeccCCCCCCCcccchhHHHHHhc-CCCCcEEEecCCccChHHHHHHH---HhCC-CCCeeecCC
Q 021667          154 --AVGSLC-PLLRSFKLNNRGHRCPKIECDDDAKAIAEN-MHGLRHLQLFGNELTNVGLQAIL---DACP-HLESLDLRQ  225 (309)
Q Consensus       154 --~l~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~-~~~L~~L~l~~~~i~~~~l~~l~---~~~~-~L~~L~l~~  225 (309)
                        .....+ ++|++|+++++.+...  . ...+...... +++|++|++++|.+++.+...+.   ...+ +|++|++++
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N~l~~~--~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWNDFSSK--S-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSSCGGGS--C-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHhCCCCccEEECcCCcCCcH--H-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence              333445 7999999998766532  1 1122222224 46999999999999876655543   3455 899999999


Q ss_pred             CCCcCch-hHH---HHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667          226 CFNVNLV-GKL---GKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV  283 (309)
Q Consensus       226 c~~~~~~-~~l---~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~  283 (309)
                      |...... ..+   ...++++|++|+|++|.+++.+...+........+.++.+|++++...
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            8754432 222   223312899999999999998777665323212347888999887553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.37  E-value=8.1e-13  Score=101.40  Aligned_cols=93  Identities=18%  Similarity=0.306  Sum_probs=51.6

Q ss_pred             CccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667          110 NLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE  188 (309)
Q Consensus       110 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  188 (309)
                      +|++|++++|. +++.++..+ ..|++|++|+|++| .++|.++..++..-                            .
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~----------------------------~  111 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLE----------------------------N  111 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCH----------------------------H
T ss_pred             eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcc----------------------------c
Confidence            45555555542 555555443 34555555555555 45555555444310                            0


Q ss_pred             cCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCchh
Q 021667          189 NMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNLVG  233 (309)
Q Consensus       189 ~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~  233 (309)
                      .+++|++|+|++| .|||.++..+. .|++|++|+|++|+.+++.+
T Consensus       112 ~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          112 LQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             HHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCHH
T ss_pred             ccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCchH
Confidence            1345666666666 57777776654 56777777777777666644

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.31  E-value=5.6e-12  Score=96.73  Aligned_cols=104  Identities=14%  Similarity=0.225  Sum_probs=83.2

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhc---CCCcCEEEecCC-CCCHHHHHHHHhc
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKG---FPLLEELELSYC-SLSQEALEAVGSL  158 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~L~~~-~~~~~~~~~l~~~  158 (309)
                      ...|++++++. .+++.++..+. .|++|++|+|++|..+++.++..+...   +++|++|+|++| .+++.++..++. 
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-  137 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-  137 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-
T ss_pred             CceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-
Confidence            34799999953 69999998885 699999999999999999999999873   679999999999 799999998864 


Q ss_pred             CCCCcEEEeccCCCCCCCcccchh--HHHHHhcCCCCc
Q 021667          159 CPLLRSFKLNNRGHRCPKIECDDD--AKAIAENMHGLR  194 (309)
Q Consensus       159 ~~~L~~L~l~~~~~~~~~~~~~~~--~~~l~~~~~~L~  194 (309)
                      |++|++|++++|    +.++ +.+  ...+...+|+++
T Consensus       138 ~~~L~~L~L~~c----~~It-d~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          138 FRNLKYLFLSDL----PGVK-EKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             CTTCCEEEEESC----TTCC-CHHHHHHHHHHHCTTCE
T ss_pred             CCCCCEEECCCC----CCCC-chHHHHHHHHHHCCCcE
Confidence            899999999873    3233 332  345555777765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.22  E-value=5.7e-12  Score=99.89  Aligned_cols=149  Identities=15%  Similarity=0.136  Sum_probs=91.1

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      +++|++|++.++ .+++  +. -+..+++|++|++++|.+...  . ....+++|++|+++++.+..      .....+.
T Consensus        43 l~~L~~L~l~~n-~i~~--l~-~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~l~~------~~~~~l~  109 (197)
T 4ezg_A           43 MNSLTYITLANI-NVTD--LT-GIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKDVTS------DKIPNLS  109 (197)
T ss_dssp             HHTCCEEEEESS-CCSC--CT-TGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTTCBG------GGSCCCT
T ss_pred             cCCccEEeccCC-CccC--hH-HHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCccCc------ccChhhc
Confidence            457777877754 3432  11 245677888888887755432  1 23447788888887655432      1111223


Q ss_pred             hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhcc
Q 021667          188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCW  267 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~  267 (309)
                       .+++|++|++++|.+++.....+ ..+++|++|++++|..+++.. ....++ +|+.|++++|.+++..  .+.     
T Consensus       110 -~l~~L~~L~Ls~n~i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~-~l~~l~-~L~~L~l~~n~i~~~~--~l~-----  178 (197)
T 4ezg_A          110 -GLTSLTLLDISHSAHDDSILTKI-NTLPKVNSIDLSYNGAITDIM-PLKTLP-ELKSLNIQFDGVHDYR--GIE-----  178 (197)
T ss_dssp             -TCTTCCEEECCSSBCBGGGHHHH-TTCSSCCEEECCSCTBCCCCG-GGGGCS-SCCEEECTTBCCCCCT--TGG-----
T ss_pred             -CCCCCCEEEecCCccCcHhHHHH-hhCCCCCEEEccCCCCccccH-hhcCCC-CCCEEECCCCCCcChH--Hhc-----
Confidence             67788888888887776555443 367788888888877555544 244556 7888888888877643  232     


Q ss_pred             CCcCCCCCCCCcc
Q 021667          268 SSVEDYPSGISDI  280 (309)
Q Consensus       268 ~~~~l~~~~~s~~  280 (309)
                      ..+.++.+++++.
T Consensus       179 ~l~~L~~L~l~~N  191 (197)
T 4ezg_A          179 DFPKLNQLYAFSQ  191 (197)
T ss_dssp             GCSSCCEEEECBC
T ss_pred             cCCCCCEEEeeCc
Confidence            3445666666544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.19  E-value=8.9e-11  Score=101.54  Aligned_cols=171  Identities=16%  Similarity=0.082  Sum_probs=119.1

Q ss_pred             CCCceEEecccc-C--------ChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHH
Q 021667           84 NGQLLSINIEYF-G--------TDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEA  154 (309)
Q Consensus        84 ~~~l~~l~l~~~-~--------~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~  154 (309)
                      .++|+.|.+... .        ....+..+...+|+|++|.|.++..+..   .. . ..++|++|.|..+.+++..+..
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~-~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GK-K-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---cc-c-cCCCCcEEEEecCCCChHHHHH
Confidence            458888877432 1        1123556667799999999987632321   11 1 3799999999999999998888


Q ss_pred             HHh-cCCCCcEEEeccCCC-CCCCcccchhHHH-HH-hcCCCCcEEEecCCccChHHHHHHHH--hCCCCCeeecCCCCC
Q 021667          155 VGS-LCPLLRSFKLNNRGH-RCPKIECDDDAKA-IA-ENMHGLRHLQLFGNELTNVGLQAILD--ACPHLESLDLRQCFN  228 (309)
Q Consensus       155 l~~-~~~~L~~L~l~~~~~-~~~~~~~~~~~~~-l~-~~~~~L~~L~l~~~~i~~~~l~~l~~--~~~~L~~L~l~~c~~  228 (309)
                      ++. .+|+|++|.|..+.. .... .....+.. +. ..+|+|++|.+.+|.+++.+...++.  .+|+|++|+|+.|. 
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~-~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-  290 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFD-GDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-  290 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCC-SCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred             HHHccCCCCcEEEEeccccccccc-hhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-
Confidence            874 689999999853110 0000 00001111 11 25899999999999999888777765  47889999998754 


Q ss_pred             cCch--hHHH---HHhHhccCceecCCCCCCchhhhhhh
Q 021667          229 VNLV--GKLG---KICAERIRDLRHPNDSTHDYEFGADF  262 (309)
Q Consensus       229 ~~~~--~~l~---~~~~~~L~~L~l~~~~~~d~~~~~~~  262 (309)
                      +++.  .++.   ..++ +|+.|++++|.++|.+..++.
T Consensus       291 L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIK-HLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             CBHHHHHHHHTTHHHHT-TCSEEECCSBBCCHHHHHHHH
T ss_pred             CChHHHHHHHhhcccCC-cceEEECCCCcCCHHHHHHHH
Confidence            5542  2333   4567 999999999999999999987

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.17  E-value=2.4e-10  Score=89.53  Aligned_cols=123  Identities=15%  Similarity=0.120  Sum_probs=70.6

Q ss_pred             HHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHh---cCCCcCEEEecCCCCCHHHHHHHHh---cCCCCcEEEeccCCC
Q 021667           99 ELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIK---GFPLLEELELSYCSLSQEALEAVGS---LCPLLRSFKLNNRGH  172 (309)
Q Consensus        99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~  172 (309)
                      ..+..+...+++|++|+|.++..+++.++..+..   ..++|++|+|++|.+++.+...++.   ..++|++|+++++.+
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            3445555557777777777554677766555443   3467777777777777776655543   235666666665433


Q ss_pred             CCCCcccchhHHHHH---hcCCCCcEEEe--cCCccChHHHHHHH---HhCCCCCeeecCCCC
Q 021667          173 RCPKIECDDDAKAIA---ENMHGLRHLQL--FGNELTNVGLQAIL---DACPHLESLDLRQCF  227 (309)
Q Consensus       173 ~~~~~~~~~~~~~l~---~~~~~L~~L~l--~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~  227 (309)
                      .      +.++.+++   ...++|++|+|  .+|.+++++...+.   ..++.|++|++++|.
T Consensus       106 ~------~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          106 S------GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             C------HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             C------HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            2      33333332   24456666666  55666666543333   234556666665544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.16  E-value=8.6e-10  Score=86.33  Aligned_cols=127  Identities=16%  Similarity=0.163  Sum_probs=94.2

Q ss_pred             HHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHh---cCCCCcEEEeccCCCCCCCcccchhHHHHH---hcCCCCcEE
Q 021667          124 DQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGS---LCPLLRSFKLNNRGHRCPKIECDDDAKAIA---ENMHGLRHL  196 (309)
Q Consensus       124 ~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L  196 (309)
                      .+.+..++...+.|++|+|++| .+++.++..++.   ..++|++|+++++.+.      +.++..++   ...++|++|
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~------~~g~~~l~~~L~~n~~L~~L   98 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN------DPVAFALAEMLKVNNTLKSL   98 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC------HHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC------hHHHHHHHHHHHhCCCcCEE
Confidence            4556777788899999999999 999988776664   3578999999876554      44444332   366889999


Q ss_pred             EecCCccChHHHHHHHHh---CCCCCeeec--CCCCCcCc-----hhHHHHHhHhccCceecCCCCCCchhh
Q 021667          197 QLFGNELTNVGLQAILDA---CPHLESLDL--RQCFNVNL-----VGKLGKICAERIRDLRHPNDSTHDYEF  258 (309)
Q Consensus       197 ~l~~~~i~~~~l~~l~~~---~~~L~~L~l--~~c~~~~~-----~~~l~~~~~~~L~~L~l~~~~~~d~~~  258 (309)
                      +|++|.|++.+...++..   ++.|++|+|  ++|. +++     +.......+ +|++|+|++|.+++.|.
T Consensus        99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~-~L~~L~L~~n~i~~~~~  168 (185)
T 1io0_A           99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNT-TLLKFGYHFTQQGPRLR  168 (185)
T ss_dssp             ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCS-SCCEEECCCSSHHHHHH
T ss_pred             ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCC-CcCEEeccCCCCChHHH
Confidence            999999999998777655   567999999  5554 444     223334445 89999999999877763

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.15  E-value=2.2e-11  Score=91.95  Aligned_cols=130  Identities=22%  Similarity=0.233  Sum_probs=67.8

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      .++|+.|+++++ .+++..+...+..+++|+.|++++|.++..   .....+++|+.|+++++.+...       +....
T Consensus        16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~-------~~~~~   84 (149)
T 2je0_A           16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGG-------LEVLA   84 (149)
T ss_dssp             GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSC-------THHHH
T ss_pred             CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccch-------HHHHh
Confidence            356666666655 333222223334566677777776655432   2223456666666665444311       22233


Q ss_pred             hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchh---HHHHHhHhccCceecC
Q 021667          188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVG---KLGKICAERIRDLRHP  249 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~---~l~~~~~~~L~~L~l~  249 (309)
                      ..+++|++|++++|.+++......+..+++|++|++++|.......   .....++ +|+.|+++
T Consensus        85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~  148 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP-QLTYLDGY  148 (149)
T ss_dssp             HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT-TCCEETTB
T ss_pred             hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC-CcccccCC
Confidence            2566666666666666653332334456666666666664333222   3445555 66666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.14  E-value=1.5e-10  Score=99.89  Aligned_cols=169  Identities=12%  Similarity=0.049  Sum_probs=94.0

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.+++.. .+.+...   ...+++|+.|++.++ .++....   ...+++|+.|+++++.+.....   ...+++|
T Consensus       154 l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L  223 (347)
T 4fmz_A          154 MTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYN-QIEDISP---LASLTSLHYFTAYVNQITDITP---VANMTRL  223 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTS-CCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GGGCTTC
T ss_pred             CCCCcEEEecCCCcCCchh---hccCCCCCEEEccCC-ccccccc---ccCCCccceeecccCCCCCCch---hhcCCcC
Confidence            56777777753 2221111   345788888888765 3332111   4456777777777775543221   3456777


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+...    ..     ...+++|++|++++|.++.-   ..+..+++|++|++++|.... .. ....++ +
T Consensus       224 ~~L~l~~n~l~~~----~~-----~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~-~  288 (347)
T 4fmz_A          224 NSLKIGNNKITDL----SP-----LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISD-IS-VLNNLS-Q  288 (347)
T ss_dssp             CEEECCSSCCCCC----GG-----GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCC-CG-GGGGCT-T
T ss_pred             CEEEccCCccCCC----cc-----hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCC-Ch-hhcCCC-C
Confidence            7777766544321    11     22666777777777655542   123356667777776664333 22 233445 6


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      |+.|++++|.+++.....+.     ..+.+..++++++..
T Consensus       289 L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          289 LNSLFLNNNQLGNEDMEVIG-----GLTNLTTLFLSQNHI  323 (347)
T ss_dssp             CSEEECCSSCCCGGGHHHHH-----TCTTCSEEECCSSSC
T ss_pred             CCEEECcCCcCCCcChhHhh-----ccccCCEEEccCCcc
Confidence            67777777666665555554     445566666666653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.12  E-value=3e-12  Score=107.50  Aligned_cols=185  Identities=16%  Similarity=0.078  Sum_probs=91.9

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .++++.|++.. .++...... ...+++|++|+++++..++... ...+..+++|++|++++|.+..... .....+++|
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L  131 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAAL  131 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred             CCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcCCEECH-hHhhCCcCC
Confidence            45666666643 222211111 2236677777776543233211 1123346677777777765442211 112346677


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+...  .    ...+ ..+++|++|++++|.++..... .+..+++|++|++++|............++ +
T Consensus       132 ~~L~l~~n~l~~~--~----~~~~-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~  202 (285)
T 1ozn_A          132 QYLYLQDNALQAL--P----DDTF-RDLGNLTHLFLHGNRISSVPER-AFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-R  202 (285)
T ss_dssp             CEEECCSSCCCCC--C----TTTT-TTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCT-T
T ss_pred             CEEECCCCccccc--C----HhHh-ccCCCccEEECCCCcccccCHH-HhcCccccCEEECCCCcccccCHhHccCcc-c
Confidence            7777766544321  0    0011 2566777777777655532111 123466677777766654333222333455 6


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      |+.|++++|.+++.....+.     ..+.+..+++++.....|
T Consensus       203 L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~N~~~c~  240 (285)
T 1ozn_A          203 LMTLYLFANNLSALPTEALA-----PLRALQYLRLNDNPWVCD  240 (285)
T ss_dssp             CCEEECCSSCCSCCCHHHHT-----TCTTCCEEECCSSCEECS
T ss_pred             ccEeeCCCCcCCcCCHHHcc-----cCcccCEEeccCCCccCC
Confidence            77777777766655444443     445566666665555433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.11  E-value=5.7e-11  Score=94.11  Aligned_cols=150  Identities=17%  Similarity=0.189  Sum_probs=104.5

Q ss_pred             CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667           85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR  163 (309)
Q Consensus        85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  163 (309)
                      +.++.+++.. .+++  +.. ...+++|++|++.++ .++..  . .+..+++|++|++++|.+++.....+ ..+++|+
T Consensus        44 ~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~~n-~~~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~  115 (197)
T 4ezg_A           44 NSLTYITLANINVTD--LTG-IEYAHNIKDLTINNI-HATNY--N-PISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLT  115 (197)
T ss_dssp             HTCCEEEEESSCCSC--CTT-GGGCTTCSEEEEESC-CCSCC--G-GGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCC
T ss_pred             CCccEEeccCCCccC--hHH-HhcCCCCCEEEccCC-CCCcc--h-hhhcCCCCCEEEeECCccCcccChhh-cCCCCCC
Confidence            4567777743 3332  112 345899999999987 44432  1 34568999999999998876444433 3589999


Q ss_pred             EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCc-cChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNE-LTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      .|+++++.+.      +.....+. .+++|++|++++|. +++-.   .+..+++|+.|++++|.... .. ....++ +
T Consensus       116 ~L~Ls~n~i~------~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~-~  182 (197)
T 4ezg_A          116 LLDISHSAHD------DSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHD-YR-GIEDFP-K  182 (197)
T ss_dssp             EEECCSSBCB------GGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCC-CT-TGGGCS-S
T ss_pred             EEEecCCccC------cHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcC-hH-HhccCC-C
Confidence            9999976543      33445555 89999999999996 77642   35579999999999987443 33 345667 9


Q ss_pred             cCceecCCCCCCc
Q 021667          243 IRDLRHPNDSTHD  255 (309)
Q Consensus       243 L~~L~l~~~~~~d  255 (309)
                      |+.|++++|++++
T Consensus       183 L~~L~l~~N~i~~  195 (197)
T 4ezg_A          183 LNQLYAFSQTIGG  195 (197)
T ss_dssp             CCEEEECBC----
T ss_pred             CCEEEeeCcccCC
Confidence            9999999999764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.11  E-value=3.4e-12  Score=109.48  Aligned_cols=89  Identities=19%  Similarity=0.119  Sum_probs=53.4

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWS  268 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~  268 (309)
                      .+++|++|++++|.++.  +..-+..+++|++|++++|...+........++ +|+.|++++|.+....-..+.     .
T Consensus       204 ~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~p~~~~-----~  275 (328)
T 4fcg_A          204 NLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTLPLDIH-----R  275 (328)
T ss_dssp             GCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC-CCCEEECTTCTTCCBCCTTGG-----G
T ss_pred             CCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCC-CCCEEECCCCCchhhcchhhh-----c
Confidence            66777777777776552  111234567777777777766665443344456 777777777765433222232     4


Q ss_pred             CcCCCCCCCCccccCCC
Q 021667          269 SVEDYPSGISDIELVSD  285 (309)
Q Consensus       269 ~~~l~~~~~s~~~~~~d  285 (309)
                      .+.|+.+++++|.....
T Consensus       276 l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          276 LTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             CTTCCEEECTTCTTCCC
T ss_pred             CCCCCEEeCCCCCchhh
Confidence            45677777777766544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.10  E-value=9.5e-12  Score=95.94  Aligned_cols=133  Identities=26%  Similarity=0.275  Sum_probs=56.6

Q ss_pred             CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667          109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE  188 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  188 (309)
                      ++|+.|++.++ .+++..+...+..+++|+.|++++|.+...   .....+++|+.|+++++.+...       +.....
T Consensus        24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~   92 (168)
T 2ell_A           24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGG-------LDMLAE   92 (168)
T ss_dssp             TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSC-------CCHHHH
T ss_pred             ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchH-------HHHHHh
Confidence            45555555544 233222222233455555555555544332   1223345555555554433211       111222


Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchh---HHHHHhHhccCceecCCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVG---KLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~---~l~~~~~~~L~~L~l~~~~~  253 (309)
                      .+++|++|++++|.+++-.....+..+++|+.|++++|.......   .....++ +|+.|++++|.+
T Consensus        93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~-~L~~L~l~~n~~  159 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP-QLTYLDGYDRED  159 (168)
T ss_dssp             HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS-SCCEETTEETTS
T ss_pred             hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc-cCcEecCCCCCh
Confidence            355555555555544432111122244555555555544332211   2333344 555555555443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.09  E-value=4.3e-10  Score=96.98  Aligned_cols=169  Identities=15%  Similarity=0.068  Sum_probs=86.4

Q ss_pred             CCCceEEeccccCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667           84 NGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR  163 (309)
Q Consensus        84 ~~~l~~l~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  163 (309)
                      .+.++.+++........+.. ...+++|+.|++.++.......    +..+++|++|++++|.+.+...   ...+++|+
T Consensus       131 l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~  202 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP----IANLTDLYSLSLNYNQIEDISP---LASLTSLH  202 (347)
T ss_dssp             CTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCSEEECTTSCCCCCGG---GGGCTTCC
T ss_pred             CCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh----hccCCCCCEEEccCCccccccc---ccCCCccc
Confidence            45566666643210011111 2346667777776552222111    4456677777777665443211   34466677


Q ss_pred             EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhcc
Q 021667          164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERI  243 (309)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L  243 (309)
                      .|.+.++.+...    ..     ...+++|++|++++|.++....   +..+++|++|++++|.... .. ....++ +|
T Consensus       203 ~L~l~~n~l~~~----~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-~~-~~~~l~-~L  267 (347)
T 4fmz_A          203 YFTAYVNQITDI----TP-----VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISD-IN-AVKDLT-KL  267 (347)
T ss_dssp             EEECCSSCCCCC----GG-----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-CG-GGTTCT-TC
T ss_pred             eeecccCCCCCC----ch-----hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCC-Ch-hHhcCC-Cc
Confidence            777665444321    10     2266677777777765553222   3456667777776664333 22 123445 67


Q ss_pred             CceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          244 RDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       244 ~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      +.|++++|.+++..  .+.     ..+.++.++++++..
T Consensus       268 ~~L~l~~n~l~~~~--~~~-----~l~~L~~L~L~~n~l  299 (347)
T 4fmz_A          268 KMLNVGSNQISDIS--VLN-----NLSQLNSLFLNNNQL  299 (347)
T ss_dssp             CEEECCSSCCCCCG--GGG-----GCTTCSEEECCSSCC
T ss_pred             CEEEccCCccCCCh--hhc-----CCCCCCEEECcCCcC
Confidence            77777776665542  222     344566666666644

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.07  E-value=2.5e-10  Score=96.87  Aligned_cols=167  Identities=11%  Similarity=0.125  Sum_probs=109.3

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .++++.|+++. .+++..  . ...+++|++|+++++ .++..  . .+..+++|++|++++|.+...  .. ...+++|
T Consensus        62 l~~L~~L~L~~n~i~~~~--~-~~~l~~L~~L~L~~n-~l~~~--~-~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L  131 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLA--P-LKNLTKITELELSGN-PLKNV--S-AIAGLQSIKTLDLTSTQITDV--TP-LAGLSNL  131 (308)
T ss_dssp             CTTCCEEECCSSCCCCCG--G-GTTCCSCCEEECCSC-CCSCC--G-GGTTCTTCCEEECTTSCCCCC--GG-GTTCTTC
T ss_pred             cCCCCEEEccCCcCCCCh--h-HccCCCCCEEEccCC-cCCCc--h-hhcCCCCCCEEECCCCCCCCc--hh-hcCCCCC
Confidence            67888888854 333211  1 445888999988866 34432  1 245678888999888866542  12 4557888


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+...    ..    + ..+++|++|++++|.+++-..   +..+++|+.|++++|.... ... ...++ +
T Consensus       132 ~~L~l~~n~l~~~----~~----l-~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~  196 (308)
T 1h6u_A          132 QVLYLDLNQITNI----SP----L-AGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISD-ISP-LASLP-N  196 (308)
T ss_dssp             CEEECCSSCCCCC----GG----G-GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-CGG-GGGCT-T
T ss_pred             CEEECCCCccCcC----cc----c-cCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCc-Chh-hcCCC-C
Confidence            8888887655422    11    3 378888888888887764322   4568888888888876443 322 44566 8


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      |++|++++|.+++..  .+.     ..+.+..++++++..
T Consensus       197 L~~L~L~~N~l~~~~--~l~-----~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          197 LIEVHLKNNQISDVS--PLA-----NTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CCEEECTTSCCCBCG--GGT-----TCTTCCEEEEEEEEE
T ss_pred             CCEEEccCCccCccc--ccc-----CCCCCCEEEccCCee
Confidence            888888888877654  232     455667777766655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.04  E-value=7.9e-12  Score=104.94  Aligned_cols=182  Identities=17%  Similarity=0.019  Sum_probs=122.1

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCC-CCHHHHHHHHhcCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCS-LSQEALEAVGSLCPL  161 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~  161 (309)
                      .+.++.|++.. .++..... ....+++|++|++.++ .++... ...+..+++|++|++++|. +..... .....+++
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~  106 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSN-VLARID-AAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGR  106 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTT
T ss_pred             CCCceEEEeeCCcCCccCHH-HcccCCCCCEEECCCC-ccceeC-HhhcCCccCCCEEeCCCCCCccccCH-HHhcCCcC
Confidence            45788888854 33322111 2245899999999965 454321 1234568999999999995 543211 12345899


Q ss_pred             CcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHh
Q 021667          162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAE  241 (309)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~  241 (309)
                      |++|++.++.+...  .    ...+ ..+++|++|++++|.++.... ..+..+++|++|++++|............++ 
T Consensus       107 L~~L~l~~n~l~~~--~----~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-  177 (285)
T 1ozn_A          107 LHTLHLDRCGLQEL--G----PGLF-RGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGLH-  177 (285)
T ss_dssp             CCEEECTTSCCCCC--C----TTTT-TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-
T ss_pred             CCEEECCCCcCCEE--C----HhHh-hCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCCcccccCHHHhcCcc-
Confidence            99999998665422  1    1112 378999999999997764222 1234689999999999865443333345577 


Q ss_pred             ccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667          242 RIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV  283 (309)
Q Consensus       242 ~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~  283 (309)
                      +|+.|++++|.+++.....+.     ..+.++.++++++...
T Consensus       178 ~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          178 SLDRLLLHQNRVAHVHPHAFR-----DLGRLMTLYLFANNLS  214 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTT-----TCTTCCEEECCSSCCS
T ss_pred             ccCEEECCCCcccccCHhHcc-----CcccccEeeCCCCcCC
Confidence            999999999999877665654     5667888888877553

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.04  E-value=1.1e-11  Score=103.38  Aligned_cols=63  Identities=17%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      .+++|++|++++|.++..... .+..+++|++|++++|............++ +|+.|++++|++
T Consensus       155 ~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~  217 (270)
T 2o6q_A          155 KLTSLKELRLYNNQLKRVPEG-AFDKLTELKTLKLDNNQLKRVPEGAFDSLE-KLKMLQLQENPW  217 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCB
T ss_pred             CCcccceeEecCCcCcEeChh-HhccCCCcCEEECCCCcCCcCCHHHhcccc-CCCEEEecCCCe
Confidence            455666666666544421111 122455666666665543332222233445 566666666654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.03  E-value=4.8e-11  Score=99.51  Aligned_cols=135  Identities=17%  Similarity=0.129  Sum_probs=61.1

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      .+++|++|++.++ .++.. ....+..+++|++|++++|.+.... ......+++|+.|+++++.+...  .     ...
T Consensus        83 ~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~--~-----~~~  152 (272)
T 3rfs_A           83 ELTNLTYLILTGN-QLQSL-PNGVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLTYLNLAHNQLQSL--P-----KGV  152 (272)
T ss_dssp             TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC--C-----TTT
T ss_pred             CCCCCCEEECCCC-ccCcc-ChhHhcCCcCCCEEECCCCcCCccC-HHHhccCCCCCEEECCCCccCcc--C-----HHH
Confidence            3556666666544 22211 0112234556666666665443211 11123355666666655443311  0     011


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      ...+++|++|++++|.++.... ..+..+++|++|++++|............++ +|+.|++++|++
T Consensus       153 ~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~  217 (272)
T 3rfs_A          153 FDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHDNPW  217 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCB
T ss_pred             hccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccCHHHHhCCc-CCCEEEccCCCc
Confidence            1245566666666665442111 1223455666666665544333223333445 666666666654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.02  E-value=7.4e-11  Score=88.99  Aligned_cols=129  Identities=17%  Similarity=0.095  Sum_probs=92.5

Q ss_pred             CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHH
Q 021667          134 FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILD  213 (309)
Q Consensus       134 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~  213 (309)
                      .++|++|++++|.+++..+......+++|+.|+++++.+...        ..+ ..+++|++|++++|.++.. +...+.
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~-~~l~~L~~L~Ls~n~i~~~-~~~~~~   85 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANL-PKLNKLKKLELSDNRVSGG-LEVLAE   85 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTC-CCCTTCCEEECCSSCCCSC-THHHHH
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhh-hcCCCCCEEECCCCcccch-HHHHhh
Confidence            478999999999876333334446689999999998665421        223 3789999999999988764 445566


Q ss_pred             hCCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCCCCCchhh---hhhhhhhccCCcCCCCCCCC
Q 021667          214 ACPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPNDSTHDYEF---GADFQDFCWSSVEDYPSGIS  278 (309)
Q Consensus       214 ~~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~~~~d~~~---~~~~~~~c~~~~~l~~~~~s  278 (309)
                      .+++|++|++++|...+.. ......++ +|++|++++|++++...   ..+.     ..+.+..+|++
T Consensus        86 ~l~~L~~L~ls~N~i~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~~~-----~l~~L~~L~l~  148 (149)
T 2je0_A           86 KCPNLTHLNLSGNKIKDLSTIEPLKKLE-NLKSLDLFNCEVTNLNDYRENVFK-----LLPQLTYLDGY  148 (149)
T ss_dssp             HCTTCCEEECTTSCCCSHHHHGGGGGCT-TCCEEECTTCGGGGSTTHHHHHHH-----HCTTCCEETTB
T ss_pred             hCCCCCEEECCCCcCCChHHHHHHhhCC-CCCEEeCcCCcccchHHHHHHHHH-----HCCCcccccCC
Confidence            7999999999998754421 14455677 99999999999876643   2333     44566666664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.01  E-value=2.3e-10  Score=97.26  Aligned_cols=39  Identities=21%  Similarity=0.171  Sum_probs=17.4

Q ss_pred             cCCCCcEEEecCCccC--hHHHHHHHHhCCCCCeeecCCCC
Q 021667          189 NMHGLRHLQLFGNELT--NVGLQAILDACPHLESLDLRQCF  227 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~--~~~l~~l~~~~~~L~~L~l~~c~  227 (309)
                      .+++|++|++++|.++  ......++..+++|++|++++|.
T Consensus       195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~  235 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS  235 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC
T ss_pred             cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC
Confidence            3445555555555444  12222233344555555555444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.01  E-value=1.2e-10  Score=104.30  Aligned_cols=88  Identities=17%  Similarity=0.131  Sum_probs=47.8

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHH-HHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFC-EAIKGFPLLEELELSYCSLSQEALEAVGSLCPL  161 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  161 (309)
                      .++|+.|++++ .++......+ ..+++|++|++.++ .++..... ..+..+++|++|+|++|.+.......+...+++
T Consensus        78 l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  155 (455)
T 3v47_A           78 LSSLIILKLDYNQFLQLETGAF-NGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRR  155 (455)
T ss_dssp             CTTCCEEECTTCTTCEECTTTT-TTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTT
T ss_pred             cccCCEEeCCCCccCccChhhc-cCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCc
Confidence            45677777753 2222111122 34677777777765 44432222 124456777777777775543322222345677


Q ss_pred             CcEEEeccCCCC
Q 021667          162 LRSFKLNNRGHR  173 (309)
Q Consensus       162 L~~L~l~~~~~~  173 (309)
                      |+.|+++++.+.
T Consensus       156 L~~L~L~~n~l~  167 (455)
T 3v47_A          156 FHVLDLTFNKVK  167 (455)
T ss_dssp             CCEEECTTCCBS
T ss_pred             ccEEeCCCCccc
Confidence            777777765443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.01  E-value=1.9e-11  Score=104.80  Aligned_cols=187  Identities=14%  Similarity=0.061  Sum_probs=123.0

Q ss_pred             ccCCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCC
Q 021667           82 RSNGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCP  160 (309)
Q Consensus        82 ~~~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  160 (309)
                      .....++.|++.. .++ ..-..+. .+++|++|++.++ .++  .+...+..+++|++|+|++|.+..  +......++
T Consensus        78 ~~~~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n-~l~--~lp~~~~~l~~L~~L~Ls~n~l~~--lp~~l~~l~  150 (328)
T 4fcg_A           78 ATQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAA-GLM--ELPDTMQQFAGLETLTLARNPLRA--LPASIASLN  150 (328)
T ss_dssp             HTSTTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESS-CCC--CCCSCGGGGTTCSEEEEESCCCCC--CCGGGGGCT
T ss_pred             ccccceeEEEccCCCch-hcChhhh-hCCCCCEEECCCC-Ccc--chhHHHhccCCCCEEECCCCcccc--CcHHHhcCc
Confidence            3467899999854 332 1112233 3889999999966 444  233345678999999999996652  222345689


Q ss_pred             CCcEEEeccCCCCCCCcccch---hHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHH
Q 021667          161 LLRSFKLNNRGHRCPKIECDD---DAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGK  237 (309)
Q Consensus       161 ~L~~L~l~~~~~~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~  237 (309)
                      +|+.|++++|..... +....   ........+++|++|++++|.++  .+..-+..+++|++|++++|....... ...
T Consensus       151 ~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~-~l~  226 (328)
T 4fcg_A          151 RLRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGP-AIH  226 (328)
T ss_dssp             TCCEEEEEEETTCCC-CCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCG-GGG
T ss_pred             CCCEEECCCCCCccc-cChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCch-hhc
Confidence            999999987543321 01000   00000125899999999999776  222235578999999999987665333 345


Q ss_pred             HhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          238 ICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       238 ~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      .++ +|+.|++++|.+.......+.     ..+.|+.+++++|.....
T Consensus       227 ~l~-~L~~L~Ls~n~~~~~~p~~~~-----~l~~L~~L~L~~n~~~~~  268 (328)
T 4fcg_A          227 HLP-KLEELDLRGCTALRNYPPIFG-----GRAPLKRLILKDCSNLLT  268 (328)
T ss_dssp             GCT-TCCEEECTTCTTCCBCCCCTT-----CCCCCCEEECTTCTTCCB
T ss_pred             cCC-CCCEEECcCCcchhhhHHHhc-----CCCCCCEEECCCCCchhh
Confidence            677 999999999987554333343     566788888888766543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.00  E-value=6.7e-11  Score=91.12  Aligned_cols=134  Identities=17%  Similarity=0.079  Sum_probs=97.8

Q ss_pred             cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667          133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL  212 (309)
Q Consensus       133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~  212 (309)
                      ..++|++|++++|.+++..+......+++|+.|+++++.+...        ..+ ..+++|++|++++|.++.. +..++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--------~~~-~~l~~L~~L~Ls~N~l~~~-~~~~~   91 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--------SNL-PKLPKLKKLELSENRIFGG-LDMLA   91 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--------SSC-CCCSSCCEEEEESCCCCSC-CCHHH
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--------hhh-ccCCCCCEEECcCCcCchH-HHHHH
Confidence            3489999999999876333444446689999999998765421        222 3789999999999988754 44556


Q ss_pred             HhCCCCCeeecCCCCCcCchh-HHHHHhHhccCceecCCCCCCchhh---hhhhhhhccCCcCCCCCCCCcccc
Q 021667          213 DACPHLESLDLRQCFNVNLVG-KLGKICAERIRDLRHPNDSTHDYEF---GADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       213 ~~~~~L~~L~l~~c~~~~~~~-~l~~~~~~~L~~L~l~~~~~~d~~~---~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      ..+++|++|++++|....... .....++ +|+.|++++|++++...   ..+.     ..+.+..++++++..
T Consensus        92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~-----~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           92 EKLPNLTHLNLSGNKLKDISTLEPLKKLE-CLKSLDLFNCEVTNLNDYRESVFK-----LLPQLTYLDGYDRED  159 (168)
T ss_dssp             HHCTTCCEEECBSSSCCSSGGGGGGSSCS-CCCEEECCSSGGGTSTTHHHHHHT-----TCSSCCEETTEETTS
T ss_pred             hhCCCCCEEeccCCccCcchhHHHHhcCC-CCCEEEeeCCcCcchHHHHHHHHH-----hCccCcEecCCCCCh
Confidence            679999999999986544221 3445677 99999999999876543   3343     567788888887754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.99  E-value=1.2e-09  Score=92.69  Aligned_cols=167  Identities=17%  Similarity=0.129  Sum_probs=118.4

Q ss_pred             CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667           85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR  163 (309)
Q Consensus        85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  163 (309)
                      +.++.+++.. .++.  +.. ...+++|+.|+++++ .++...  . +..+++|++|++++|.+...  .. ...+++|+
T Consensus        41 ~~L~~L~l~~~~i~~--l~~-~~~l~~L~~L~L~~n-~i~~~~--~-~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~  110 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT--IEG-VQYLNNLIGLELKDN-QITDLA--P-LKNLTKITELELSGNPLKNV--SA-IAGLQSIK  110 (308)
T ss_dssp             HTCCEEECTTSCCCC--CTT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCCSCCEEECCSCCCSCC--GG-GTTCTTCC
T ss_pred             CCcCEEEeeCCCccC--chh-hhccCCCCEEEccCC-cCCCCh--h-HccCCCCCEEEccCCcCCCc--hh-hcCCCCCC
Confidence            4677888753 2222  122 345899999999976 454322  1 66789999999999976542  22 45589999


Q ss_pred             EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhcc
Q 021667          164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERI  243 (309)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L  243 (309)
                      .|+++++.+...        ..+ ..+++|++|++++|.++....   +..+++|++|++++|.... ... ...++ +|
T Consensus       111 ~L~l~~n~l~~~--------~~l-~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~~-l~~l~-~L  175 (308)
T 1h6u_A          111 TLDLTSTQITDV--------TPL-AGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSD-LTP-LANLS-KL  175 (308)
T ss_dssp             EEECTTSCCCCC--------GGG-TTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-CGG-GTTCT-TC
T ss_pred             EEECCCCCCCCc--------hhh-cCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCC-Chh-hcCCC-CC
Confidence            999998766432        123 489999999999997774332   5578999999999986544 333 55677 99


Q ss_pred             CceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667          244 RDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV  283 (309)
Q Consensus       244 ~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~  283 (309)
                      +.|++++|.+++...  +.     ..+.++.++++++...
T Consensus       176 ~~L~l~~n~l~~~~~--l~-----~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          176 TTLKADDNKISDISP--LA-----SLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             CEEECCSSCCCCCGG--GG-----GCTTCCEEECTTSCCC
T ss_pred             CEEECCCCccCcChh--hc-----CCCCCCEEEccCCccC
Confidence            999999999876543  32     4567788888777553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.98  E-value=7.3e-10  Score=102.38  Aligned_cols=149  Identities=18%  Similarity=0.107  Sum_probs=84.4

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .++|+.|+++. .+++..  . ...+++|+.|.|+++ .++..  . .+..+++|++|+|++|.+...  .. ...+++|
T Consensus        64 l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~L  133 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDEN-KIKDL--S-SLKDLKKLKSLSLEHNGISDI--NG-LVHLPQL  133 (605)
T ss_dssp             CTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSS-CCCCC--T-TSTTCTTCCEEECTTSCCCCC--GG-GGGCTTC
T ss_pred             CCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCC-CCCCC--h-hhccCCCCCEEEecCCCCCCC--cc-ccCCCcc
Confidence            56677777743 222211  1 335777777777755 33321  1 234567777777777755431  11 3446777


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+...        ..+. .+++|+.|+|++|.++....   +..+++|+.|+|++|.... ... ...++ +
T Consensus       134 ~~L~Ls~N~l~~l--------~~l~-~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~-l~~-l~~l~-~  198 (605)
T 1m9s_A          134 ESLYLGNNKITDI--------TVLS-RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISD-LRA-LAGLK-N  198 (605)
T ss_dssp             SEEECCSSCCCCC--------GGGG-SCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCB-CGG-GTTCT-T
T ss_pred             CEEECCCCccCCc--------hhhc-ccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCC-ChH-HccCC-C
Confidence            7777776544321        1222 67777777777776654322   4467777777777765333 322 33455 7


Q ss_pred             cCceecCCCCCCchh
Q 021667          243 IRDLRHPNDSTHDYE  257 (309)
Q Consensus       243 L~~L~l~~~~~~d~~  257 (309)
                      |+.|+|++|++++.+
T Consensus       199 L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          199 LDVLELFSQECLNKP  213 (605)
T ss_dssp             CSEEECCSEEEECCC
T ss_pred             CCEEEccCCcCcCCc
Confidence            777777777765443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.98  E-value=7.8e-10  Score=93.05  Aligned_cols=149  Identities=17%  Similarity=0.093  Sum_probs=72.3

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .++++.|+++. .+++..  . ...+++|+.|+++++ .++..  . .+..+++|++|++++|.+.+-  .. ...+++|
T Consensus        67 l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~L~~n~i~~~--~~-l~~l~~L  136 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDEN-KVKDL--S-SLKDLKKLKSLSLEHNGISDI--NG-LVHLPQL  136 (291)
T ss_dssp             CTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSS-CCCCG--G-GGTTCTTCCEEECTTSCCCCC--GG-GGGCTTC
T ss_pred             CCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCC-cCCCC--h-hhccCCCCCEEECCCCcCCCC--hh-hcCCCCC
Confidence            45566666633 222211  1 234566666666644 33321  1 134456666666666644431  11 2345666


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+...        ..+. .+++|++|++++|.+++...   +..+++|++|++++|.. ++... ...++ +
T Consensus       137 ~~L~l~~n~l~~~--------~~l~-~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i-~~l~~-l~~l~-~  201 (291)
T 1h6t_A          137 ESLYLGNNKITDI--------TVLS-RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHI-SDLRA-LAGLK-N  201 (291)
T ss_dssp             CEEECCSSCCCCC--------GGGG-GCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCC-CBCGG-GTTCT-T
T ss_pred             CEEEccCCcCCcc--------hhhc-cCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcC-CCChh-hccCC-C
Confidence            6666665443311        1122 56666666666665553221   33556666666666543 22322 23345 6


Q ss_pred             cCceecCCCCCCchh
Q 021667          243 IRDLRHPNDSTHDYE  257 (309)
Q Consensus       243 L~~L~l~~~~~~d~~  257 (309)
                      |+.|++++|++++.+
T Consensus       202 L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          202 LDVLELFSQECLNKP  216 (291)
T ss_dssp             CSEEEEEEEEEECCC
T ss_pred             CCEEECcCCcccCCc
Confidence            666666666654433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.97  E-value=3e-10  Score=96.56  Aligned_cols=182  Identities=19%  Similarity=0.129  Sum_probs=117.9

Q ss_pred             CCCceEEeccc-cCCh--HHHHHHHhc-CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHH-HH-HHH-H
Q 021667           84 NGQLLSINIEY-FGTD--ELLQYIANR-SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQE-AL-EAV-G  156 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~--~~l~~l~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~-~~l-~  156 (309)
                      .+.++.|++++ .++.  ..+..+... .++|++|+++++ .++.... ..+..+++|++|++++|.+... .+ ..+ .
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSC-EQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchH-HHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            57889999854 3332  233333221 489999999976 4432211 2344689999999999976543 22 222 1


Q ss_pred             hcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHH
Q 021667          157 SLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLG  236 (309)
Q Consensus       157 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~  236 (309)
                      ..+++|++|+++++.+..    .......+...+++|++|++++|.++.......+..+++|++|++++|....-...+.
T Consensus       198 ~~l~~L~~L~L~~N~l~~----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~  273 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGMET----PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP  273 (312)
T ss_dssp             TSCTTCCEEECTTSCCCC----HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred             ccCCCCCEEECCCCcCcc----hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence            568999999999765541    1233445555889999999999987764311223346889999999987553222222


Q ss_pred             HHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          237 KICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       237 ~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                         + +|+.|++++|.+++...  +.     ..+.+..+++++...
T Consensus       274 ---~-~L~~L~Ls~N~l~~~p~--~~-----~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          274 ---A-KLSVLDLSYNRLDRNPS--PD-----ELPQVGNLSLKGNPF  308 (312)
T ss_dssp             ---S-EEEEEECCSSCCCSCCC--TT-----TSCEEEEEECTTCTT
T ss_pred             ---C-CceEEECCCCCCCCChh--Hh-----hCCCCCEEeccCCCC
Confidence               5 89999999999876622  32     456677777776543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.97  E-value=8.1e-12  Score=105.96  Aligned_cols=66  Identities=14%  Similarity=0.092  Sum_probs=27.2

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      .+++|++|++++|.++..... .+..+++|++|++++|...+........++ +|+.|++++|.+++.
T Consensus       173 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          173 ELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYSLNHIMTS  238 (306)
T ss_dssp             TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCSBCCSGGGTTCT-TCCEEECTTSCCCBC
T ss_pred             hCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccCccChhhccCcc-cCCEeECCCCCCccc
Confidence            344555555555544322111 112344555555554443222111222334 555555555554443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.95  E-value=1.5e-11  Score=114.15  Aligned_cols=139  Identities=15%  Similarity=0.130  Sum_probs=59.9

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      .+++|+.|++.++. ++..  ...+..+++|++|++++|.+...........+++|+.|+++++.+...      ....+
T Consensus       374 ~~~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~  444 (606)
T 3vq2_A          374 GTNSLRHLDLSFNG-AIIM--SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID------FDGIF  444 (606)
T ss_dssp             CCSCCCEEECCSCS-EEEE--CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC------CTTTT
T ss_pred             cCCcccEeECCCCc-cccc--hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc------chhhh
Confidence            35555555555442 2110  012233455555555555332211101123355666666655433211      00111


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                       ..+++|++|++++|.+++..+...+..+++|++|++++|...+........++ +|++|++++|.+++.
T Consensus       445 -~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~  512 (606)
T 3vq2_A          445 -LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-RLQLLNMSHNNLLFL  512 (606)
T ss_dssp             -TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCE
T ss_pred             -cCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc-cCCEEECCCCcCCCc
Confidence             14555566666555544322222233455555555555543332222223344 555555555555444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.95  E-value=1.1e-10  Score=99.34  Aligned_cols=184  Identities=15%  Similarity=0.066  Sum_probs=117.8

Q ss_pred             cCCCceEEeccc-cCChHHHHHH-HhcCCCccEEEeCCCCCCCHH--HHHHHHh-cCCCcCEEEecCCCCCHHHHHHHHh
Q 021667           83 SNGQLLSINIEY-FGTDELLQYI-ANRSRNLRNLRLVSCYNISDQ--GFCEAIK-GFPLLEELELSYCSLSQEALEAVGS  157 (309)
Q Consensus        83 ~~~~l~~l~l~~-~~~~~~l~~l-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~l~~  157 (309)
                      ....++.|+++. .+++.....+ ...+++|++|+++++ .++..  .+..+.. ..++|++|+|++|.+....... ..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~~  170 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VR  170 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-CC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-hc
Confidence            367899999854 3332222222 256899999999976 44432  2222221 1389999999999765432222 24


Q ss_pred             cCCCCcEEEeccCCCCCCCcccch-hHHHH-HhcCCCCcEEEecCCccCh--HHHHHHHHhCCCCCeeecCCCCCcCch-
Q 021667          158 LCPLLRSFKLNNRGHRCPKIECDD-DAKAI-AENMHGLRHLQLFGNELTN--VGLQAILDACPHLESLDLRQCFNVNLV-  232 (309)
Q Consensus       158 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~l-~~~~~~L~~L~l~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~~~~~~-  232 (309)
                      .+++|+.|+++++.+.     ... ....+ ...+++|++|++++|.++.  .....++..+++|++|++++|...... 
T Consensus       171 ~l~~L~~L~Ls~N~l~-----~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          171 VFPALSTLDLSDNPEL-----GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             CCSSCCEEECCSCTTC-----HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             cCCCCCEEECCCCCcC-----cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence            5899999999975432     111 12222 1488999999999998883  344566678899999999998765532 


Q ss_pred             hHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          233 GKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       233 ~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      .......+ +|+.|++++|.++....  .   .  . +.++.+|+++...
T Consensus       246 ~~~~~~l~-~L~~L~Ls~N~l~~ip~--~---~--~-~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          246 APSCDWPS-QLNSLNLSFTGLKQVPK--G---L--P-AKLSVLDLSYNRL  286 (312)
T ss_dssp             CSCCCCCT-TCCEEECTTSCCSSCCS--S---C--C-SEEEEEECCSSCC
T ss_pred             hhhhhhcC-CCCEEECCCCccChhhh--h---c--c-CCceEEECCCCCC
Confidence            12223346 99999999999873211  1   1  1 4566677776644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.94  E-value=6.1e-11  Score=100.77  Aligned_cols=180  Identities=19%  Similarity=0.125  Sum_probs=115.9

Q ss_pred             CCCceEEeccc-cCChH----HHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHH-HHHH--H
Q 021667           84 NGQLLSINIEY-FGTDE----LLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQE-ALEA--V  155 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~----~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~--l  155 (309)
                      .+.++.|+++. .++..    ....+. .+++|++|+++++ .++.. ....+..+++|++|+|++|.+... ++..  .
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  192 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQA-HSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALC  192 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECC-SSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCC-Ccchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence            56788888854 33321    112223 5899999999976 44321 112344689999999999976543 2221  1


Q ss_pred             HhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhC---CCCCeeecCCCCCcCch
Q 021667          156 GSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDAC---PHLESLDLRQCFNVNLV  232 (309)
Q Consensus       156 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~---~~L~~L~l~~c~~~~~~  232 (309)
                      ...+++|++|+++++.+..    .......+...+++|++|++++|.++......+. .+   ++|++|++++|....-.
T Consensus       193 ~~~l~~L~~L~Ls~N~l~~----l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          193 PHKFPAIQNLALRNTGMET----PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             TTSSCCCCSCBCCSSCCCC----HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCCSCC
T ss_pred             hhcCCCCCEEECCCCCCCc----hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCCchh
Confidence            2467899999999866541    1233334445889999999999987754211111 23   78999999988765332


Q ss_pred             hHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          233 GKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       233 ~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      ..+   ++ +|+.|++++|.++....  +.     ..+.+..+++++...
T Consensus       268 ~~~---~~-~L~~L~Ls~N~l~~~~~--~~-----~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          268 KGL---PA-KLRVLDLSSNRLNRAPQ--PD-----ELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SCC---CS-CCSCEECCSCCCCSCCC--TT-----SCCCCSCEECSSTTT
T ss_pred             hhh---cC-CCCEEECCCCcCCCCch--hh-----hCCCccEEECcCCCC
Confidence            222   25 99999999999875422  22     456778888876644

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.94  E-value=1.3e-11  Score=113.69  Aligned_cols=140  Identities=18%  Similarity=0.107  Sum_probs=70.2

Q ss_pred             cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667          133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL  212 (309)
Q Consensus       133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~  212 (309)
                      .+++|++|++++|.+...........+++|+.|+++++.+...       .......+++|++|++++|.+++..+...+
T Consensus       394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~  466 (570)
T 2z63_A          394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-------FNGIFNGLSSLEVLKMAGNSFQENFLPDIF  466 (570)
T ss_dssp             TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-------CTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-------chhhhhcCCcCcEEECcCCcCccccchhhh
Confidence            3455555555554322111111123455666666655433211       011112566777777777765532222334


Q ss_pred             HhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          213 DACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       213 ~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      ..+++|++|++++|............++ +|+.|++++|.+++.....+.     ..+.+..+++++.....+
T Consensus       467 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          467 TELRNLTFLDLSQCQLEQLSPTAFNSLS-SLQVLNMASNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCC
T ss_pred             hcccCCCEEECCCCccccCChhhhhccc-CCCEEeCCCCcCCCCCHHHhh-----cccCCcEEEecCCcccCC
Confidence            4566777777776654433223334456 777777777776655443343     445566666666554433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.93  E-value=1.4e-10  Score=100.31  Aligned_cols=38  Identities=21%  Similarity=0.304  Sum_probs=18.5

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF  227 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  227 (309)
                      .+++|++|++++|.++... ..+...+++|+.|++++|.
T Consensus       196 ~l~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~L~~n~  233 (353)
T 2z80_A          196 SIQNVSHLILHMKQHILLL-EIFVDVTSSVECLELRDTD  233 (353)
T ss_dssp             TCSEEEEEEEECSCSTTHH-HHHHHHTTTEEEEEEESCB
T ss_pred             ccccCCeecCCCCccccch-hhhhhhcccccEEECCCCc
Confidence            4455555555555443221 2223345566666665554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.93  E-value=4.3e-11  Score=99.95  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=17.6

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF  227 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  227 (309)
                      .+++|++|++++|.++...+...+..+++|++|++++|.
T Consensus       122 ~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A          122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            445555555555544332222223344555555555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.92  E-value=5.4e-09  Score=95.69  Aligned_cols=82  Identities=10%  Similarity=-0.018  Sum_probs=46.3

Q ss_pred             CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCc
Q 021667          191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSV  270 (309)
Q Consensus       191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~  270 (309)
                      ++|++|++++|.++..     ...+++|++|++++|.... +.. ...++ +|+.|++++|.+++.....+.     ..+
T Consensus       431 ~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~l~~-ip~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~-----~l~  497 (549)
T 2z81_A          431 QTLEVLDVSNNNLDSF-----SLFLPRLQELYISRNKLKT-LPD-ASLFP-VLLVMKISRNQLKSVPDGIFD-----RLT  497 (549)
T ss_dssp             TTCSEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSS-CCC-GGGCT-TCCEEECCSSCCCCCCTTGGG-----GCT
T ss_pred             CCceEEECCCCChhhh-----cccCChhcEEECCCCccCc-CCC-cccCc-cCCEEecCCCccCCcCHHHHh-----cCc
Confidence            3555555555554431     1356677777777765432 222 12455 777777777777654433343     345


Q ss_pred             CCCCCCCCccccCCC
Q 021667          271 EDYPSGISDIELVSD  285 (309)
Q Consensus       271 ~l~~~~~s~~~~~~d  285 (309)
                      .+..++++++.+.-+
T Consensus       498 ~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          498 SLQKIWLHTNPWDCS  512 (549)
T ss_dssp             TCCEEECCSSCBCCC
T ss_pred             ccCEEEecCCCccCC
Confidence            666677776665433

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.92  E-value=4.4e-10  Score=93.63  Aligned_cols=180  Identities=18%  Similarity=0.077  Sum_probs=122.1

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      ...++.+.+.. .+++  +.. ...+++|++|++.++ .++..   ..+..+++|++|++++|.++... ......+++|
T Consensus        40 l~~L~~L~l~~~~i~~--~~~-l~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L  111 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKS--VQG-IQYLPNVRYLALGGN-KLHDI---SALKELTNLTYLILTGNQLQSLP-NGVFDKLTNL  111 (272)
T ss_dssp             HTTCCEEECTTSCCCC--CTT-GGGCTTCCEEECTTS-CCCCC---GGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTC
T ss_pred             ccceeeeeeCCCCccc--ccc-cccCCCCcEEECCCC-CCCCc---hhhcCCCCCCEEECCCCccCccC-hhHhcCCcCC
Confidence            35778888754 2222  112 335899999999976 44432   13557899999999999665321 1223458999


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      ++|+++++.+...  .     ......+++|++|++++|.++.... ..+..+++|+.|++++|............++ +
T Consensus       112 ~~L~L~~n~l~~~--~-----~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~  182 (272)
T 3rfs_A          112 KELVLVENQLQSL--P-----DGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEGVFDKLT-Q  182 (272)
T ss_dssp             CEEECTTSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-T
T ss_pred             CEEECCCCcCCcc--C-----HHHhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECCCCCcCccCHHHhcCCc-c
Confidence            9999998765422  1     1112378999999999997763221 2234689999999999875544444445677 9


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      |+.|++++|.+++.....+.     ..+.+..+++++.....+
T Consensus       183 L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          183 LKDLRLYQNQLKSVPDGVFD-----RLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCC
T ss_pred             CCEEECCCCcCCccCHHHHh-----CCcCCCEEEccCCCcccc
Confidence            99999999998765544443     556788888887766544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.92  E-value=4.2e-11  Score=111.13  Aligned_cols=86  Identities=20%  Similarity=0.053  Sum_probs=36.2

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc---hhHHHHHhHhccCceecCCCCCCchhhhhhhhhh
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL---VGKLGKICAERIRDLRHPNDSTHDYEFGADFQDF  265 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~---~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~  265 (309)
                      .+++|++|++++|.++..... .+..+++|++|++++|...+.   .......++ +|+.|++++|.+++.....+.   
T Consensus       423 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~---  497 (606)
T 3t6q_A          423 NLHLLKVLNLSHSLLDISSEQ-LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLSFCDLSSIDQHAFT---  497 (606)
T ss_dssp             TCTTCCEEECTTCCCBTTCTT-TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECTTSCCCEECTTTTT---
T ss_pred             CcccCCEEECCCCccCCcCHH-HHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECCCCccCccChhhhc---
Confidence            344444444444433321111 122344555555555443221   001223344 555555555555444333332   


Q ss_pred             ccCCcCCCCCCCCccc
Q 021667          266 CWSSVEDYPSGISDIE  281 (309)
Q Consensus       266 c~~~~~l~~~~~s~~~  281 (309)
                        ..+.++.++++++.
T Consensus       498 --~l~~L~~L~Ls~N~  511 (606)
T 3t6q_A          498 --SLKMMNHVDLSHNR  511 (606)
T ss_dssp             --TCTTCCEEECCSSC
T ss_pred             --cccCCCEEECCCCc
Confidence              34455555555553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.91  E-value=3.9e-09  Score=94.80  Aligned_cols=82  Identities=16%  Similarity=0.111  Sum_probs=34.4

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWS  268 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~  268 (309)
                      .+++|+.|++++|.+++...   +..+++|+.|++++|.... .. -...++ +|+.|++++|++++...  +.     .
T Consensus       307 ~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-~~-~l~~l~-~L~~L~l~~n~l~~~~~--~~-----~  373 (466)
T 1o6v_A          307 NLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSD-VS-SLANLT-NINWLSAGHNQISDLTP--LA-----N  373 (466)
T ss_dssp             GCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCC-CG-GGTTCT-TCCEEECCSSCCCBCGG--GT-----T
T ss_pred             CCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCC-ch-hhccCC-CCCEEeCCCCccCccch--hh-----c
Confidence            34444444444443332211   2234444444444443222 11 122334 55555555555443322  21     3


Q ss_pred             CcCCCCCCCCccccC
Q 021667          269 SVEDYPSGISDIELV  283 (309)
Q Consensus       269 ~~~l~~~~~s~~~~~  283 (309)
                      .+.+..++++++...
T Consensus       374 l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          374 LTRITQLGLNDQAWT  388 (466)
T ss_dssp             CTTCCEEECCCEEEE
T ss_pred             CCCCCEEeccCCccc
Confidence            445555556555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.89  E-value=3.3e-11  Score=102.17  Aligned_cols=182  Identities=17%  Similarity=0.073  Sum_probs=95.4

Q ss_pred             CCCceEEeccc-cCChHH--HHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCC
Q 021667           84 NGQLLSINIEY-FGTDEL--LQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCP  160 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~--l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  160 (309)
                      .++++.|++.. .++...  ...+. .+++|++|+++++ .++.  +...+..+++|++|+++++.+...........++
T Consensus        51 l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~L~~L~Ls~n-~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  126 (306)
T 2z66_A           51 LTQLTKLSLSSNGLSFKGCCSQSDF-GTTSLKYLDLSFN-GVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  126 (306)
T ss_dssp             CTTCSEEECCSSCCCEEEEEEHHHH-SCSCCCEEECCSC-SEEE--EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT
T ss_pred             cccCCEEECCCCccCcccCcccccc-cccccCEEECCCC-cccc--ChhhcCCCCCCCEEECCCCcccccccchhhhhcc
Confidence            45677777643 232110  11122 3677777777755 2221  1111334677777777777443221111234467


Q ss_pred             CCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhH
Q 021667          161 LLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICA  240 (309)
Q Consensus       161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~  240 (309)
                      +|+.|+++++.+...       .......+++|++|++++|.++...+...+..+++|++|++++|............++
T Consensus       127 ~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  199 (306)
T 2z66_A          127 NLIYLDISHTHTRVA-------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS  199 (306)
T ss_dssp             TCCEEECTTSCCEEC-------STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCEEECCCCcCCcc-------chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCC
Confidence            777777776443211       0111125677777777777665432333344567777777777654333223334455


Q ss_pred             hccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          241 ERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       241 ~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                       +|++|++++|.+++.....+.     ..+.++.+|++++..
T Consensus       200 -~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          200 -SLQVLNMSHNNFFSLDTFPYK-----CLNSLQVLDYSLNHI  235 (306)
T ss_dssp             -TCCEEECTTSCCSBCCSGGGT-----TCTTCCEEECTTSCC
T ss_pred             -CCCEEECCCCccCccChhhcc-----CcccCCEeECCCCCC
Confidence             777777777776655443333     344566666665544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.89  E-value=1.6e-10  Score=95.18  Aligned_cols=159  Identities=12%  Similarity=0.064  Sum_probs=106.5

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.|++.. .++... ......+++|++|+++++ .++... ...+..+++|++|+|++|.++... ......+++|
T Consensus        34 ~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L  109 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYN-QLQTLS-AGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQL  109 (251)
T ss_dssp             CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTC
T ss_pred             CCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCC-cCCccC-HhHhccCCcCCEEECCCCcccccC-hhHhcccCCC
Confidence            35788999854 332211 112335899999999975 444311 123456899999999999765321 1223568999


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+...  .     ......+++|++|++++|.++.-.. ..+..+++|++|++++|............++ +
T Consensus       110 ~~L~L~~N~l~~~--~-----~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~  180 (251)
T 3m19_A          110 DKLYLGGNQLKSL--P-----SGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG-K  180 (251)
T ss_dssp             CEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-T
T ss_pred             CEEEcCCCcCCCc--C-----hhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHHHHhCCC-C
Confidence            9999998766422  1     1112378999999999997763222 1234688999999999876554433445667 9


Q ss_pred             cCceecCCCCCCc
Q 021667          243 IRDLRHPNDSTHD  255 (309)
Q Consensus       243 L~~L~l~~~~~~d  255 (309)
                      |+.|++++|+++.
T Consensus       181 L~~L~l~~N~~~c  193 (251)
T 3m19_A          181 LQTITLFGNQFDC  193 (251)
T ss_dssp             CCEEECCSCCBCT
T ss_pred             CCEEEeeCCceeC
Confidence            9999999999754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.89  E-value=4.9e-11  Score=107.50  Aligned_cols=133  Identities=20%  Similarity=0.091  Sum_probs=57.2

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      +++|++|+|.++ .++... ...+..+++|++|+|++|.+..... .....+++|+.|++.++.+...      ....+.
T Consensus        79 l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~l~~n~l~~~------~~~~~~  149 (477)
T 2id5_A           79 LFNLRTLGLRSN-RLKLIP-LGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYI------SHRAFS  149 (477)
T ss_dssp             CTTCCEEECCSS-CCCSCC-TTSSTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEEECCTTCCEE------CTTSST
T ss_pred             CccCCEEECCCC-cCCccC-cccccCCCCCCEEECCCCccccCCh-hHccccccCCEEECCCCcccee------Chhhcc
Confidence            455555555543 222110 0112334555555555554432111 1113355555555554332210      001111


Q ss_pred             hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCC
Q 021667          188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS  252 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~  252 (309)
                       .+++|++|++++|.++.... ..+..+++|+.|+++++............++ +|+.|++++|+
T Consensus       150 -~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~~~  211 (477)
T 2id5_A          150 -GLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDYSFKRLY-RLKVLEISHWP  211 (477)
T ss_dssp             -TCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTTCSCSCT-TCCEEEEECCT
T ss_pred             -CCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChhhcccCc-ccceeeCCCCc
Confidence             45566666666654443221 1223455666666655543332222223344 56666666655

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.88  E-value=8.3e-11  Score=104.92  Aligned_cols=82  Identities=18%  Similarity=0.081  Sum_probs=36.8

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .++|+.|+++. .++.... .....+++|++|+|+++ .++... ...+..+++|++|+|++|.+..... .....+++|
T Consensus        87 l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L  162 (440)
T 3zyj_A           87 LRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDN-RLTTIP-NGAFVYLSKLKELWLRNNPIESIPS-YAFNRIPSL  162 (440)
T ss_dssp             CSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSS-CCSSCC-TTTSCSCSSCCEEECCSCCCCEECT-TTTTTCTTC
T ss_pred             CCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCC-cCCeeC-HhHhhccccCceeeCCCCcccccCH-HHhhhCccc
Confidence            45566666643 2222111 11233666777777654 333110 1123345666666666664432110 112234555


Q ss_pred             cEEEecc
Q 021667          163 RSFKLNN  169 (309)
Q Consensus       163 ~~L~l~~  169 (309)
                      +.|++.+
T Consensus       163 ~~L~l~~  169 (440)
T 3zyj_A          163 RRLDLGE  169 (440)
T ss_dssp             CEEECCC
T ss_pred             CEeCCCC
Confidence            5555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.88  E-value=3.4e-09  Score=89.10  Aligned_cols=169  Identities=15%  Similarity=0.073  Sum_probs=121.4

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.+++.. .+++-  .. ...+++|+.|+++++ .++...  . +..+++|+.|++++|.+...  .. ...+++|
T Consensus        45 l~~L~~L~l~~~~i~~~--~~-~~~l~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L  114 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDENKVKDL--SS-LKDLKKL  114 (291)
T ss_dssp             HHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSCCCCG--GG-GTTCTTC
T ss_pred             cCcccEEEccCCCcccC--hh-HhcCCCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCCcCCCC--hh-hccCCCC
Confidence            34678888854 22221  22 345899999999976 454321  1 66789999999999977652  22 4568999


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+...        ..+. .+++|++|++++|.++.-   ..+..+++|+.|++++|..... .. ...++ +
T Consensus       115 ~~L~L~~n~i~~~--------~~l~-~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~-~~-l~~l~-~  179 (291)
T 1h6t_A          115 KSLSLEHNGISDI--------NGLV-HLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDI-VP-LAGLT-K  179 (291)
T ss_dssp             CEEECTTSCCCCC--------GGGG-GCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCC-GG-GTTCT-T
T ss_pred             CEEECCCCcCCCC--------hhhc-CCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccc-hh-hcCCC-c
Confidence            9999998766432        2233 889999999999988764   3455789999999999865443 33 55677 9


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCC
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVS  284 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~  284 (309)
                      |+.|++++|.+++..  .+.     ..+.+..++++++....
T Consensus       180 L~~L~L~~N~i~~l~--~l~-----~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          180 LQNLYLSKNHISDLR--ALA-----GLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCEEECCSSCCCBCG--GGT-----TCTTCSEEEEEEEEEEC
T ss_pred             cCEEECCCCcCCCCh--hhc-----cCCCCCEEECcCCcccC
Confidence            999999999998753  233     56678888888776543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.88  E-value=2.2e-09  Score=88.93  Aligned_cols=127  Identities=23%  Similarity=0.219  Sum_probs=62.0

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      .+++|+.|+++++ .++....   +..+++|++|++++|.++.-  ..+..  ++|+.|+++++.+...        ..+
T Consensus        61 ~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N~l~~l--~~~~~--~~L~~L~L~~N~l~~~--------~~l  124 (263)
T 1xeu_A           61 FFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRNRLKNL--NGIPS--ACLSRLFLDNNELRDT--------DSL  124 (263)
T ss_dssp             GCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSSCCSCC--TTCCC--SSCCEEECCSSCCSBS--------GGG
T ss_pred             hCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCCccCCc--Ccccc--CcccEEEccCCccCCC--------hhh
Confidence            3566666666644 3332111   34556666666666644321  11111  5566666665443311        112


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      . .+++|+.|++++|.+++-.   .+..+++|+.|++++|.....  .....++ +|+.|++++|+++..
T Consensus       125 ~-~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~--~~l~~l~-~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          125 I-HLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT--GGLTRLK-KVNWIDLTGQKCVNE  187 (263)
T ss_dssp             T-TCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC--TTSTTCC-CCCEEEEEEEEEECC
T ss_pred             c-CcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch--HHhccCC-CCCEEeCCCCcccCC
Confidence            2 5666666666666555421   233456666666666543332  2223344 566666666665433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.87  E-value=6.6e-10  Score=99.36  Aligned_cols=136  Identities=15%  Similarity=0.021  Sum_probs=71.8

Q ss_pred             CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667          135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA  214 (309)
Q Consensus       135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~  214 (309)
                      ++|++|++++|.+.... ......+++|+.|+++++.+...      ....+. .+++|++|++++|.++..... .+..
T Consensus       275 ~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~-~l~~L~~L~Ls~N~l~~~~~~-~~~~  345 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQNEINKI------DDNAFW-GLTHLLKLNLSQNFLGSIDSR-MFEN  345 (455)
T ss_dssp             SCCCEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCEE------CTTTTT-TCTTCCEEECCSSCCCEECGG-GGTT
T ss_pred             cCceEEEecCccccccc-hhhcccCCCCCEEECCCCccccc------ChhHhc-CcccCCEEECCCCccCCcChh-HhcC
Confidence            45666666666444321 11123456677777765443311      111122 566777777777765432211 2235


Q ss_pred             CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      +++|++|++++|............++ +|++|++++|.+++.....+.     ..+.++.+++++.....+
T Consensus       346 l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          346 LDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCC
T ss_pred             cccCCEEECCCCcccccChhhccccc-cccEEECCCCccccCCHhHhc-----cCCcccEEEccCCCcccC
Confidence            67777777777654332223334456 777777777776654443333     445666666666655443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.87  E-value=1.2e-10  Score=104.27  Aligned_cols=63  Identities=14%  Similarity=0.075  Sum_probs=26.7

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD  255 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d  255 (309)
                      .+++|++|++++|.++.-  .. +..+++|+.|++++|............++ +|+.|++++|.++.
T Consensus       194 ~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~n~l~~  256 (452)
T 3zyi_A          194 GLFNLKYLNLGMCNIKDM--PN-LTPLVGLEELEMSGNHFPEIRPGSFHGLS-SLKKLWVMNSQVSL  256 (452)
T ss_dssp             TCTTCCEEECTTSCCSSC--CC-CTTCTTCCEEECTTSCCSEECGGGGTTCT-TCCEEECTTSCCCE
T ss_pred             CCCCCCEEECCCCccccc--cc-ccccccccEEECcCCcCcccCcccccCcc-CCCEEEeCCCcCce
Confidence            445555555555544321  01 22344455555555443322222223334 44555555444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.86  E-value=6.7e-09  Score=93.25  Aligned_cols=167  Identities=17%  Similarity=0.091  Sum_probs=92.2

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.+++.. .+++..  . ...+++|+.|++.++ .++..   ..+..+++|++|++++|.+.....   ...+++|
T Consensus       198 l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L  267 (466)
T 1o6v_A          198 LTNLESLIATNNQISDIT--P-LGILTNLDELSLNGN-QLKDI---GTLASLTNLTDLDLANNQISNLAP---LSGLTKL  267 (466)
T ss_dssp             CTTCSEEECCSSCCCCCG--G-GGGCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTC
T ss_pred             CCCCCEEEecCCcccccc--c-ccccCCCCEEECCCC-Ccccc---hhhhcCCCCCEEECCCCccccchh---hhcCCCC
Confidence            46677777743 222211  1 234677777777755 33321   123456777777777775543211   3456777


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+...    .    .+ ..+++|+.|++++|.++....   +..+++|+.|++++|...+.. . ...++ +
T Consensus       268 ~~L~l~~n~l~~~----~----~~-~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~-~-~~~l~-~  332 (466)
T 1o6v_A          268 TELKLGANQISNI----S----PL-AGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDIS-P-VSSLT-K  332 (466)
T ss_dssp             SEEECCSSCCCCC----G----GG-TTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCG-G-GGGCT-T
T ss_pred             CEEECCCCccCcc----c----cc-cCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCch-h-hccCc-c
Confidence            7777776544321    1    12 266777777777775553221   345677777777776543322 2 34555 7


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      |+.|++++|.+++.  ..+.     ..+.++.++++++..
T Consensus       333 L~~L~l~~n~l~~~--~~l~-----~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          333 LQRLFFYNNKVSDV--SSLA-----NLTNINWLSAGHNQI  365 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGT-----TCTTCCEEECCSSCC
T ss_pred             CCEeECCCCccCCc--hhhc-----cCCCCCEEeCCCCcc
Confidence            77777777776654  2222     445566666665543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.86  E-value=1.5e-10  Score=104.24  Aligned_cols=181  Identities=15%  Similarity=0.018  Sum_probs=87.1

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .++|+.|++.. .++.. .......+++|++|+|+++ .++.. ....+..+++|++|+|++|.+....... ...+++|
T Consensus        79 l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L  154 (477)
T 2id5_A           79 LFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISEN-KIVIL-LDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSL  154 (477)
T ss_dssp             CTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTC
T ss_pred             CccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCC-ccccC-ChhHccccccCCEEECCCCccceeChhh-ccCCCCC
Confidence            45666666643 22211 1111234667777777654 33211 0112345666667766666443221111 1235666


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCC------------------------C
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPH------------------------L  218 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~------------------------L  218 (309)
                      +.|++.++.+...      ....+. .+++|+.|++.+|.++..... .+..+++                        |
T Consensus       155 ~~L~l~~n~l~~~------~~~~l~-~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  226 (477)
T 2id5_A          155 EQLTLEKCNLTSI------PTEALS-HLHGLIVLRLRHLNINAIRDY-SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL  226 (477)
T ss_dssp             CEEEEESCCCSSC------CHHHHT-TCTTCCEEEEESCCCCEECTT-CSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred             CEEECCCCcCccc------ChhHhc-ccCCCcEEeCCCCcCcEeChh-hcccCcccceeeCCCCccccccCcccccCccc
Confidence            6666665443311      111222 556666666666544321111 1123444                        4


Q ss_pred             CeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          219 ESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       219 ~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      +.|++++|............++ +|+.|+|++|.++......+.     ..+.|+.++++++..
T Consensus       227 ~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l  284 (477)
T 2id5_A          227 TSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLH-----ELLRLQEIQLVGGQL  284 (477)
T ss_dssp             SEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCT-----TCTTCCEEECCSSCC
T ss_pred             cEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhcc-----ccccCCEEECCCCcc
Confidence            5555544433322223445566 788888888877655544443     455666666666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.85  E-value=2.1e-10  Score=102.61  Aligned_cols=109  Identities=10%  Similarity=-0.018  Sum_probs=55.5

Q ss_pred             cCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHH
Q 021667          158 LCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGK  237 (309)
Q Consensus       158 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~  237 (309)
                      .+++|+.|+++++.+...  .      .+ ..+++|+.|++++|.++..... .+..+++|+.|++++|...........
T Consensus       194 ~l~~L~~L~L~~n~l~~~--~------~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~  263 (452)
T 3zyi_A          194 GLFNLKYLNLGMCNIKDM--P------NL-TPLVGLEELEMSGNHFPEIRPG-SFHGLSSLKKLWVMNSQVSLIERNAFD  263 (452)
T ss_dssp             TCTTCCEEECTTSCCSSC--C------CC-TTCTTCCEEECTTSCCSEECGG-GGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CCCCCCEEECCCCccccc--c------cc-cccccccEEECcCCcCcccCcc-cccCccCCCEEEeCCCcCceECHHHhc
Confidence            355666666665444321  0      12 2566777777777765532222 123566677777766554333222333


Q ss_pred             HhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          238 ICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       238 ~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      .++ +|+.|+|++|.++......+.     ..+.+..+++++...
T Consensus       264 ~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          264 GLA-SLVELNLAHNNLSSLPHDLFT-----PLRYLVELHLHHNPW  302 (452)
T ss_dssp             TCT-TCCEEECCSSCCSCCCTTSST-----TCTTCCEEECCSSCE
T ss_pred             CCC-CCCEEECCCCcCCccChHHhc-----cccCCCEEEccCCCc
Confidence            445 666666666666544333332     233455555554433

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.85  E-value=2e-10  Score=95.56  Aligned_cols=184  Identities=15%  Similarity=0.052  Sum_probs=122.0

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.|++.. .++... ......+++|++|++.++ .++.. ...++..+++|++|+|++|.+..... .....+++|
T Consensus        36 ~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L  111 (270)
T 2o6q_A           36 PADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNL  111 (270)
T ss_dssp             CTTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSC
T ss_pred             CCCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCC
Confidence            35788999854 232211 112335899999999865 44321 11234568999999999996653211 223558999


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|++.++.+...  .     ......+++|++|++++|.++.... ..+..+++|++|++++|............++ +
T Consensus       112 ~~L~l~~n~l~~~--~-----~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~  182 (270)
T 2o6q_A          112 AELRLDRNQLKSL--P-----PRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEGAFDKLT-E  182 (270)
T ss_dssp             CEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCT-T
T ss_pred             CEEECCCCccCee--C-----HHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChhHhccCC-C
Confidence            9999998665432  1     1112378999999999997764222 1234689999999999865554333345567 9


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      |+.|++++|.++......+.     ..+.+..+++++....-|
T Consensus       183 L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          183 LKTLKLDNNQLKRVPEGAFD-----SLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCS
T ss_pred             cCEEECCCCcCCcCCHHHhc-----cccCCCEEEecCCCeeCC
Confidence            99999999998766555453     456777888887766544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.84  E-value=1.2e-10  Score=108.16  Aligned_cols=183  Identities=16%  Similarity=0.107  Sum_probs=95.7

Q ss_pred             CCCceEEeccc-cCChHH-HHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCC
Q 021667           84 NGQLLSINIEY-FGTDEL-LQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPL  161 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~-l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  161 (309)
                      .+.++.++++. .++... .......+++|++|++.++ .++.. ....+..+++|++|++++|.+...........+++
T Consensus       349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  426 (606)
T 3t6q_A          349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL  426 (606)
T ss_dssp             CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEE-CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred             cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcC-CHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence            46778887754 222211 0112234778888888765 33211 11223456777888877774432211122344677


Q ss_pred             CcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHH--HHHHhCCCCCeeecCCCCCcCchhHHHHHh
Q 021667          162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQ--AILDACPHLESLDLRQCFNVNLVGKLGKIC  239 (309)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~--~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~  239 (309)
                      |+.|+++++.+...      ....+. .+++|++|++++|.++...+.  ..+..+++|+.|++++|...+........+
T Consensus       427 L~~L~l~~n~l~~~------~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  499 (606)
T 3t6q_A          427 LKVLNLSHSLLDIS------SEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL  499 (606)
T ss_dssp             CCEEECTTCCCBTT------CTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCEEECCCCccCCc------CHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc
Confidence            77777776544321      011122 567777777777766542211  123456777777777765443322333445


Q ss_pred             HhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          240 AERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       240 ~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      + +|++|++++|.+++.....+.     ....+ .++++++..
T Consensus       500 ~-~L~~L~Ls~N~l~~~~~~~l~-----~l~~L-~L~L~~N~l  535 (606)
T 3t6q_A          500 K-MMNHVDLSHNRLTSSSIEALS-----HLKGI-YLNLASNHI  535 (606)
T ss_dssp             T-TCCEEECCSSCCCGGGGGGGT-----TCCSC-EEECCSSCC
T ss_pred             c-CCCEEECCCCccCcCChhHhC-----ccccc-EEECcCCcc
Confidence            5 677777777776655544443     33344 444544433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.83  E-value=1.9e-10  Score=94.60  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=49.8

Q ss_pred             cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667          133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL  212 (309)
Q Consensus       133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~  212 (309)
                      .+++|++|+|++|.+..... .....+++|+.|+++++.+...  .     ......+++|++|++++|.++.-.. ..+
T Consensus        57 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~--~-----~~~~~~l~~L~~L~L~~N~l~~~~~-~~~  127 (251)
T 3m19_A           57 GLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLANNQLASL--P-----LGVFDHLTQLDKLYLGGNQLKSLPS-GVF  127 (251)
T ss_dssp             TCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTTSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCCT-TTT
T ss_pred             CcccCCEEECCCCcCCccCH-hHhccCCcCCEEECCCCccccc--C-----hhHhcccCCCCEEEcCCCcCCCcCh-hHh
Confidence            45556666665554432111 1112345566666555443311  0     0111245556666665554442111 112


Q ss_pred             HhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667          213 DACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       213 ~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      ..+++|++|++++|............++ +|+.|+|++|.++..
T Consensus       128 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~  170 (251)
T 3m19_A          128 DRLTKLKELRLNTNQLQSIPAGAFDKLT-NLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCC
T ss_pred             ccCCcccEEECcCCcCCccCHHHcCcCc-CCCEEECCCCcCCcc
Confidence            2455566666655543322222223344 556666666555443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.83  E-value=1e-09  Score=85.09  Aligned_cols=135  Identities=16%  Similarity=0.083  Sum_probs=87.3

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      +++|+.|++.++ .++.  +..+....++|+.|++++|.++.-   .....+++|+.|+++++.+...    .   ..+.
T Consensus        18 ~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~----~---~~~~   84 (176)
T 1a9n_A           18 AVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRI----G---EGLD   84 (176)
T ss_dssp             TTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEE----C---SCHH
T ss_pred             cCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccccc----C---cchh
Confidence            678888888866 4442  233344456888888888877642   2234578888888887655411    1   1122


Q ss_pred             hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchh---HHHHHhHhccCceecCCCCCCch
Q 021667          188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVG---KLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~---~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      ..+++|++|++++|.+++-.....+..+++|+.|++++|.......   .+...++ +|+.|++++|...+.
T Consensus        85 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~-~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A           85 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP-QVRVLDFQKVKLKER  155 (176)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT-TCSEETTEECCHHHH
T ss_pred             hcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCC-ccceeCCCcCCHHHH
Confidence            3788888888888877642211134468888888888877543322   2466777 888888888876443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.82  E-value=2.1e-10  Score=102.36  Aligned_cols=159  Identities=18%  Similarity=0.070  Sum_probs=75.8

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPL  161 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~  161 (309)
                      .++|+.|++.+ .++. ........+++|+.|++.++ .++... ...+..+++|++|+|+++ .+... .......+++
T Consensus       111 l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i-~~~~~~~l~~  186 (440)
T 3zyj_A          111 LANLNTLELFDNRLTT-IPNGAFVYLSKLKELWLRNN-PIESIP-SYAFNRIPSLRRLDLGELKRLSYI-SEGAFEGLSN  186 (440)
T ss_dssp             CSSCCEEECCSSCCSS-CCTTTSCSCSSCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECCCCTTCCEE-CTTTTTTCSS
T ss_pred             CccCCEEECCCCcCCe-eCHhHhhccccCceeeCCCC-cccccC-HHHhhhCcccCEeCCCCCCCccee-Ccchhhcccc
Confidence            46788888754 2221 11112234677888888754 333211 112345677777777764 22211 0111234566


Q ss_pred             CcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHh
Q 021667          162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAE  241 (309)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~  241 (309)
                      |+.|+++++.+...  .      .+ ..+++|++|+|++|.++..... .+..+++|+.|++++|............++ 
T Consensus       187 L~~L~L~~n~l~~~--~------~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-  255 (440)
T 3zyj_A          187 LRYLNLAMCNLREI--P------NL-TPLIKLDELDLSGNHLSAIRPG-SFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-  255 (440)
T ss_dssp             CCEEECTTSCCSSC--C------CC-TTCSSCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTSSTTCT-
T ss_pred             cCeecCCCCcCccc--c------cc-CCCcccCEEECCCCccCccChh-hhccCccCCEEECCCCceeEEChhhhcCCC-
Confidence            77777766544321  1      11 2555666666666655432111 122455555665555543322222223344 


Q ss_pred             ccCceecCCCCCCchh
Q 021667          242 RIRDLRHPNDSTHDYE  257 (309)
Q Consensus       242 ~L~~L~l~~~~~~d~~  257 (309)
                      +|+.|+|++|.++...
T Consensus       256 ~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          256 SLVEINLAHNNLTLLP  271 (440)
T ss_dssp             TCCEEECTTSCCCCCC
T ss_pred             CCCEEECCCCCCCccC
Confidence            5555555555554433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.81  E-value=2.9e-09  Score=96.93  Aligned_cols=160  Identities=14%  Similarity=0.102  Sum_probs=95.5

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHH-HHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQE-ALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA  185 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  185 (309)
                      .+++|++|+++++ .++.... ..+..+++|++|++++|.+..- .+......+++|+.|+++++.+...      ....
T Consensus       322 ~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~------l~~~  393 (520)
T 2z7x_B          322 KISPFLHLDFSNN-LLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD------EKKG  393 (520)
T ss_dssp             SCCCCCEEECCSS-CCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC------GGGC
T ss_pred             hCCcccEEEeECC-ccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc------cccc
Confidence            4677888888765 4443211 2234577888888888877642 2333345578888888877655421      0001


Q ss_pred             HHhcCCCCcEEEecCCccChHHHHHHHHhC-CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhh
Q 021667          186 IAENMHGLRHLQLFGNELTNVGLQAILDAC-PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQD  264 (309)
Q Consensus       186 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~-~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~  264 (309)
                      ....+++|++|++++|.++.....    .. ++|+.|++++|....-...+. .++ +|++|++++|.++......+.  
T Consensus       394 ~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~~L~~L~Ls~N~l~~ip~~~~-~l~-~L~~L~L~~N~l~~l~~~~~~--  465 (520)
T 2z7x_B          394 DCSWTKSLLSLNMSSNILTDTIFR----CLPPRIKVLDLHSNKIKSIPKQVV-KLE-ALQELNVASNQLKSVPDGIFD--  465 (520)
T ss_dssp             SCCCCTTCCEEECCSSCCCGGGGG----SCCTTCCEEECCSSCCCCCCGGGG-GCT-TCCEEECCSSCCCCCCTTTTT--
T ss_pred             hhccCccCCEEECcCCCCCcchhh----hhcccCCEEECCCCcccccchhhh-cCC-CCCEEECCCCcCCccCHHHhc--
Confidence            112567888888888877643322    22 578888888776543222333 666 888888888887654333332  


Q ss_pred             hccCCcCCCCCCCCccccCCC
Q 021667          265 FCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       265 ~c~~~~~l~~~~~s~~~~~~d  285 (309)
                         ..+.+..+++++....-|
T Consensus       466 ---~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          466 ---RLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             ---TCTTCCEEECCSSCBCCC
T ss_pred             ---cCCcccEEECcCCCCccc
Confidence               445677777776665444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.81  E-value=2.3e-10  Score=96.29  Aligned_cols=161  Identities=16%  Similarity=0.065  Sum_probs=85.5

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.|++.. .++....   ...+++|+.|+++++ .++.  +...+..+++|++|++++|.++.... .....+++|
T Consensus        54 l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L  126 (290)
T 1p9a_G           54 YTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGEL  126 (290)
T ss_dssp             CTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSCCCCCCS-STTTTCTTC
T ss_pred             CCCCCEEECCCCccCcccC---CCCCCcCCEEECCCC-cCCc--CchhhccCCCCCEEECCCCcCcccCH-HHHcCCCCC
Confidence            45666666643 2221100   034667777777754 3331  12223456777777777775542111 112346777


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|.++++.+...  .     ......+++|+.|++++|.++.-. ..++..+++|+.|++++|....-... ....+ +
T Consensus       127 ~~L~L~~N~l~~~--~-----~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~ip~~-~~~~~-~  196 (290)
T 1p9a_G          127 QELYLKGNELKTL--P-----PGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKG-FFGSH-L  196 (290)
T ss_dssp             CEEECTTSCCCCC--C-----TTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCCCCTT-TTTTC-C
T ss_pred             CEEECCCCCCCcc--C-----hhhcccccCCCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcCCccChh-hcccc-c
Confidence            7777776554321  1     111225677888888877665211 12234567788888877664432222 22334 6


Q ss_pred             cCceecCCCCCC-chhhhhh
Q 021667          243 IRDLRHPNDSTH-DYEFGAD  261 (309)
Q Consensus       243 L~~L~l~~~~~~-d~~~~~~  261 (309)
                      |+.|.+++|++. +.++..+
T Consensus       197 L~~l~L~~Np~~C~c~~~~l  216 (290)
T 1p9a_G          197 LPFAFLHGNPWLCNCEILYF  216 (290)
T ss_dssp             CSEEECCSCCBCCSGGGHHH
T ss_pred             CCeEEeCCCCccCcCccHHH
Confidence            888888888853 4444443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.80  E-value=4.5e-10  Score=96.24  Aligned_cols=84  Identities=17%  Similarity=0.060  Sum_probs=48.4

Q ss_pred             CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCc
Q 021667          191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSV  270 (309)
Q Consensus       191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~  270 (309)
                      ++|++|++++|.++...... +..+++|++|++++|............++ +|++|++++|.++.... .+.     ..+
T Consensus       192 ~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~-~l~-----~l~  263 (330)
T 1xku_A          192 PSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVKVPG-GLA-----DHK  263 (330)
T ss_dssp             TTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCSSCCT-TTT-----TCS
T ss_pred             ccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCC-CCCEEECCCCcCccCCh-hhc-----cCC
Confidence            56667777666555332222 23567788888877664433222334556 78888888887763211 121     445


Q ss_pred             CCCCCCCCcccc
Q 021667          271 EDYPSGISDIEL  282 (309)
Q Consensus       271 ~l~~~~~s~~~~  282 (309)
                      .++.++++++..
T Consensus       264 ~L~~L~l~~N~i  275 (330)
T 1xku_A          264 YIQVVYLHNNNI  275 (330)
T ss_dssp             SCCEEECCSSCC
T ss_pred             CcCEEECCCCcC
Confidence            666777776654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.80  E-value=7.4e-10  Score=94.37  Aligned_cols=178  Identities=13%  Similarity=0.051  Sum_probs=90.6

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHH----------
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEAL----------  152 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----------  152 (309)
                      .++++.|+++. .++......+ ..+++|+.|+++++ .++...  . +..+++|++|++++|.++....          
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~--~-~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~  107 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADL-APFTKLELLNLSSN-VLYETL--D-LESLSTLRTLDLNNNYVQELLVGPSIETLHAA  107 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHH-TTCTTCCEEECTTS-CCEEEE--E-ETTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred             CCCCCEEECcCCccCcCCHHHh-hCCCcCCEEECCCC-cCCcch--h-hhhcCCCCEEECcCCccccccCCCCcCEEECC
Confidence            45666666643 2332221222 34666777766654 332110  0 3445666666666664332100          


Q ss_pred             -----HHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC
Q 021667          153 -----EAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF  227 (309)
Q Consensus       153 -----~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  227 (309)
                           ......+++|+.|+++++.+...      ....+ ..+++|++|++++|.++......+...+++|++|++++|.
T Consensus       108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~------~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  180 (317)
T 3o53_A          108 NNNISRVSCSRGQGKKNIYLANNKITML------RDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (317)
T ss_dssp             SSCCSEEEECCCSSCEEEECCSSCCCSG------GGBCT-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             CCccCCcCccccCCCCEEECCCCCCCCc------cchhh-hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence                 00011234555555554433211      00111 2567778888877776654444444567778888887776


Q ss_pred             CcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          228 NVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       228 ~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      .... .... .++ +|++|++++|.++..... +.     ..+.+..++++++..
T Consensus       181 l~~~-~~~~-~l~-~L~~L~Ls~N~l~~l~~~-~~-----~l~~L~~L~L~~N~l  226 (317)
T 3o53_A          181 IYDV-KGQV-VFA-KLKTLDLSSNKLAFMGPE-FQ-----SAAGVTWISLRNNKL  226 (317)
T ss_dssp             CCEE-ECCC-CCT-TCCEEECCSSCCCEECGG-GG-----GGTTCSEEECTTSCC
T ss_pred             Cccc-cccc-ccc-cCCEEECCCCcCCcchhh-hc-----ccCcccEEECcCCcc
Confidence            4332 1111 245 788888888887654322 22     345666777766644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.80  E-value=2.6e-09  Score=97.18  Aligned_cols=164  Identities=13%  Similarity=0.114  Sum_probs=112.5

Q ss_pred             cCCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCH-HHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCC
Q 021667           83 SNGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISD-QGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCP  160 (309)
Q Consensus        83 ~~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  160 (309)
                      ..+.++.+++++ .+++.....+ ..+++|+.|+++++ .++. ..+...+..+++|++|++++|.+...........++
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            456788888854 4443222223 45899999999976 5553 345566778999999999999775421222234578


Q ss_pred             CCcEEEeccCCCCCCCcccchhHHHHHhcC-CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHh
Q 021667          161 LLRSFKLNNRGHRCPKIECDDDAKAIAENM-HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKIC  239 (309)
Q Consensus       161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~  239 (309)
                      +|+.|+++++.+...          +...+ ++|+.|++++|.++  .+..-+..+++|++|++++|...+-.......+
T Consensus       400 ~L~~L~Ls~N~l~~~----------~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l  467 (520)
T 2z7x_B          400 SLLSLNMSSNILTDT----------IFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGIFDRL  467 (520)
T ss_dssp             TCCEEECCSSCCCGG----------GGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cCCEEECcCCCCCcc----------hhhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCccCHHHhccC
Confidence            999999998655421          11123 69999999999887  222222378999999999987554333335567


Q ss_pred             HhccCceecCCCCCC-chhhhhh
Q 021667          240 AERIRDLRHPNDSTH-DYEFGAD  261 (309)
Q Consensus       240 ~~~L~~L~l~~~~~~-d~~~~~~  261 (309)
                      + +|+.|++++|+++ +.....+
T Consensus       468 ~-~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          468 T-SLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             T-TCCEEECCSSCBCCCHHHHHH
T ss_pred             C-cccEEECcCCCCcccCCchHH
Confidence            7 9999999999974 4444444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.78  E-value=4.7e-10  Score=96.10  Aligned_cols=140  Identities=18%  Similarity=0.122  Sum_probs=81.3

Q ss_pred             CCCccEEEeCCCCCCCHH-HHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQ-GFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      +++|+.|++.++ .++.. .....+..+++|++|+++++.++.-.    ....++|+.|+++++.+..      .....+
T Consensus       144 l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~----~~~~~~L~~L~l~~n~l~~------~~~~~~  212 (330)
T 1xku_A          144 LNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPPSLTELHLDGNKITK------VDAASL  212 (330)
T ss_dssp             CTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC----SSCCTTCSEEECTTSCCCE------ECTGGG
T ss_pred             CccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCccccCC----ccccccCCEEECCCCcCCc------cCHHHh
Confidence            555555555533 22211 11112334555555555555333100    0112556666666543321      111223


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADF  262 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~  262 (309)
                      . .+++|++|++++|.++..... .+..+++|++|++++|.... .......++ +|+.|++++|+++..+...++
T Consensus       213 ~-~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~-~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          213 K-GLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLVK-VPGGLADHK-YIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             T-TCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCSS-CCTTTTTCS-SCCEEECCSSCCCCCCTTSSS
T ss_pred             c-CCCCCCEEECCCCcCceeChh-hccCCCCCCEEECCCCcCcc-CChhhccCC-CcCEEECCCCcCCccChhhcC
Confidence            3 789999999999987753322 23468999999999987553 322334567 999999999999877766664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.78  E-value=5.6e-10  Score=106.44  Aligned_cols=155  Identities=15%  Similarity=0.133  Sum_probs=75.6

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHH--HHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEA--VGSLCPLLRSFKLNNRGHRCPKIECDDDAKA  185 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  185 (309)
                      +++|++|+++++ .++......+...+++|++|+|++|.+.......  ....+++|++|+++++.+...  . .     
T Consensus       125 l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~-~-----  195 (768)
T 3rgz_A          125 CSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--V-D-----  195 (768)
T ss_dssp             CTTCCEEECCSS-EEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC--C-B-----
T ss_pred             CCCCCEEECcCC-ccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc--C-C-----
Confidence            566666666544 1111101111134566666666666544322221  134466666666665443321  0 0     


Q ss_pred             HHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhh
Q 021667          186 IAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDF  265 (309)
Q Consensus       186 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~  265 (309)
                      . ..+++|++|++++|.++...- . +..+++|++|++++|............++ +|++|++++|.++...-     ..
T Consensus       196 ~-~~l~~L~~L~Ls~n~l~~~~~-~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~-----~~  266 (768)
T 3rgz_A          196 V-SRCVNLEFLDVSSNNFSTGIP-F-LGDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFVGPIP-----PL  266 (768)
T ss_dssp             C-TTCTTCCEEECCSSCCCSCCC-B-CTTCCSCCEEECCSSCCCSCHHHHTTTCS-SCCEEECCSSCCEESCC-----CC
T ss_pred             c-ccCCcCCEEECcCCcCCCCCc-c-cccCCCCCEEECcCCcCCCcccHHHhcCC-CCCEEECCCCcccCccC-----cc
Confidence            0 256666666666665543111 1 33566677777766665444334444555 67777777766532110     11


Q ss_pred             ccCCcCCCCCCCCcccc
Q 021667          266 CWSSVEDYPSGISDIEL  282 (309)
Q Consensus       266 c~~~~~l~~~~~s~~~~  282 (309)
                        ..+.++.++++++..
T Consensus       267 --~l~~L~~L~L~~n~l  281 (768)
T 3rgz_A          267 --PLKSLQYLSLAENKF  281 (768)
T ss_dssp             --CCTTCCEEECCSSEE
T ss_pred             --ccCCCCEEECcCCcc
Confidence              334555566665543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.77  E-value=4.6e-09  Score=97.08  Aligned_cols=170  Identities=16%  Similarity=0.090  Sum_probs=121.8

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      ...|+.|++.. .+..  +.. ...+++|+.|+|+++ .++...  . +..+++|+.|+|++|.+...  . ....+++|
T Consensus        42 L~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~Ls~N-~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L  111 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKS--VQG-IQYLPNVTKLFLNGN-KLTDIK--P-LTNLKNLGWLFLDENKIKDL--S-SLKDLKKL  111 (605)
T ss_dssp             HTTCCCCBCTTCCCCC--CTT-GGGCTTCCEEECTTS-CCCCCG--G-GGGCTTCCEEECCSSCCCCC--T-TSTTCTTC
T ss_pred             CCCCCEEECcCCCCCC--ChH-HccCCCCCEEEeeCC-CCCCCh--h-hccCCCCCEEECcCCCCCCC--h-hhccCCCC
Confidence            34677777743 2222  112 345899999999976 444321  1 66799999999999977542  2 23558999


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+...        ..+. .+++|+.|+|++|.++.-   ..+..+++|+.|+|++|...... . ...++ +
T Consensus       112 ~~L~Ls~N~l~~l--------~~l~-~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~-~-l~~l~-~  176 (605)
T 1m9s_A          112 KSLSLEHNGISDI--------NGLV-HLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV-P-LAGLT-K  176 (605)
T ss_dssp             CEEECTTSCCCCC--------GGGG-GCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCG-G-GTTCT-T
T ss_pred             CEEEecCCCCCCC--------cccc-CCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCch-h-hccCC-C
Confidence            9999998766532        1233 899999999999988764   34557999999999998755433 3 56677 9


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      |+.|+|++|.+++.  ..+.     ..+.|..++++++.....
T Consensus       177 L~~L~Ls~N~i~~l--~~l~-----~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          177 LQNLYLSKNHISDL--RALA-----GLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCEEECCSSCCCBC--GGGT-----TCTTCSEEECCSEEEECC
T ss_pred             CCEEECcCCCCCCC--hHHc-----cCCCCCEEEccCCcCcCC
Confidence            99999999999875  2333     567888889988876544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.75  E-value=1.6e-09  Score=94.90  Aligned_cols=15  Identities=33%  Similarity=0.332  Sum_probs=7.8

Q ss_pred             cCCCcCEEEecCCCC
Q 021667          133 GFPLLEELELSYCSL  147 (309)
Q Consensus       133 ~~~~L~~L~L~~~~~  147 (309)
                      .+++|++|++++|.+
T Consensus       163 ~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          163 ATTSLQNLQLSSNRL  177 (390)
T ss_dssp             SCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCcC
Confidence            345555555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.74  E-value=2.1e-09  Score=91.58  Aligned_cols=169  Identities=17%  Similarity=0.126  Sum_probs=94.4

Q ss_pred             hHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCc
Q 021667           98 DELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKI  177 (309)
Q Consensus        98 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  177 (309)
                      ...+..+...+++|++|+++++ .++... ...+..+++|++|+|++|.+....  . ...+++|+.|+++++.+...  
T Consensus        23 ~~~~~~~~~~~~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l~~l--   95 (317)
T 3o53_A           23 KQALASLRQSAWNVKELDLSGN-PLSQIS-AADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYVQEL--   95 (317)
T ss_dssp             HHHHHHHHTTGGGCSEEECTTS-CCCCCC-HHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEEEEE--
T ss_pred             hhhHHHHhccCCCCCEEECcCC-ccCcCC-HHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCccccc--
Confidence            3445566667889999999976 555322 234567999999999999765321  1 45678999999987544311  


Q ss_pred             ccchh----------H-HHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc-hhHHHHHhHhccCc
Q 021667          178 ECDDD----------A-KAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL-VGKLGKICAERIRD  245 (309)
Q Consensus       178 ~~~~~----------~-~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~-~~~l~~~~~~~L~~  245 (309)
                      .....          + ......+++|++|++++|.++...-.. +..+++|++|++++|..... ...+...++ +|++
T Consensus        96 ~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~  173 (317)
T 3o53_A           96 LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNFAELAASSD-TLEH  173 (317)
T ss_dssp             EECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTSCCCEEEGGGGGGGTT-TCCE
T ss_pred             cCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCCCCCcccHHHHhhccC-cCCE
Confidence            00000          0 000112455666666666554321111 22456677777766654332 223333455 6777


Q ss_pred             eecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          246 LRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       246 L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      |++++|.+++.....       ..+.++.++++++..
T Consensus       174 L~L~~N~l~~~~~~~-------~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          174 LNLQYNFIYDVKGQV-------VFAKLKTLDLSSNKL  203 (317)
T ss_dssp             EECTTSCCCEEECCC-------CCTTCCEEECCSSCC
T ss_pred             EECCCCcCccccccc-------ccccCCEEECCCCcC
Confidence            777777765441111       234566666665544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.74  E-value=8.5e-11  Score=100.06  Aligned_cols=85  Identities=19%  Similarity=0.122  Sum_probs=44.8

Q ss_pred             CCCceEEecc--ccCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCC
Q 021667           84 NGQLLSINIE--YFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPL  161 (309)
Q Consensus        84 ~~~l~~l~l~--~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  161 (309)
                      .+.++.|++.  +.+....-..+ ..+++|++|++.++ .++.. +...+..+++|++|++++|.+..... .....+++
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~  150 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHT-NVSGA-IPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPN  150 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEE-CCEEE-CCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTT
T ss_pred             CCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCC-eeCCc-CCHHHhCCCCCCEEeCCCCccCCcCC-hHHhcCCC
Confidence            5677888775  33322221222 34778888887754 33211 11224456777777777774432111 11234677


Q ss_pred             CcEEEeccCCC
Q 021667          162 LRSFKLNNRGH  172 (309)
Q Consensus       162 L~~L~l~~~~~  172 (309)
                      |++|+++++.+
T Consensus       151 L~~L~L~~N~l  161 (313)
T 1ogq_A          151 LVGITFDGNRI  161 (313)
T ss_dssp             CCEEECCSSCC
T ss_pred             CCeEECcCCcc
Confidence            77777766443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.73  E-value=6.3e-11  Score=100.85  Aligned_cols=134  Identities=11%  Similarity=0.050  Sum_probs=82.9

Q ss_pred             CCceEEeccc-cCCh--HHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCC
Q 021667           85 GQLLSINIEY-FGTD--ELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPL  161 (309)
Q Consensus        85 ~~l~~l~l~~-~~~~--~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~  161 (309)
                      .+++.+++.. .++.  .....+ ..+++|++|+++++..++.. +...+..+++|++|+|++|.+...... ....+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCC
Confidence            5788888854 3332  222233 35899999999842233321 122345789999999999976532112 2345899


Q ss_pred             CcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCC-CCCeeecCCCCCc
Q 021667          162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACP-HLESLDLRQCFNV  229 (309)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~-~L~~L~l~~c~~~  229 (309)
                      |++|+++++.+...      ....+. .+++|++|++++|.++......+. .++ +|++|++++|...
T Consensus       127 L~~L~Ls~N~l~~~------~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~  187 (313)
T 1ogq_A          127 LVTLDFSYNALSGT------LPPSIS-SLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             CCEEECCSSEEESC------CCGGGG-GCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEE
T ss_pred             CCEEeCCCCccCCc------CChHHh-cCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeee
Confidence            99999997655421      111223 788899999988876633222222 444 7788887776543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.73  E-value=1.1e-09  Score=98.85  Aligned_cols=128  Identities=16%  Similarity=0.095  Sum_probs=72.6

Q ss_pred             CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667          135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA  214 (309)
Q Consensus       135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~  214 (309)
                      ++|++|++++|.++...    ...+++|+.|+++++.+...      ....+. .+++|++|++++|.++......+...
T Consensus        99 ~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~------~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~  167 (487)
T 3oja_A           99 PSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITML------RDLDEG-CRSRVQYLDLKLNEIDTVNFAELAAS  167 (487)
T ss_dssp             TTCCEEECCSSCCCCEE----ECCCSSCEEEECCSSCCCSG------GGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             CCcCEEECcCCcCCCCC----ccccCCCCEEECCCCCCCCC------Cchhhc-CCCCCCEEECCCCCCCCcChHHHhhh
Confidence            44555555555333211    12346666666665444321      011122 57788888888887775544455556


Q ss_pred             CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      +++|+.|++++|..... .... .++ +|+.|+|++|.++..... +.     ..+.+..++++++..
T Consensus       168 l~~L~~L~Ls~N~l~~~-~~~~-~l~-~L~~L~Ls~N~l~~~~~~-~~-----~l~~L~~L~Ls~N~l  226 (487)
T 3oja_A          168 SDTLEHLNLQYNFIYDV-KGQV-VFA-KLKTLDLSSNKLAFMGPE-FQ-----SAAGVTWISLRNNKL  226 (487)
T ss_dssp             TTTCCEEECTTSCCCEE-ECCC-CCT-TCCEEECCSSCCCEECGG-GG-----GGTTCSEEECTTSCC
T ss_pred             CCcccEEecCCCccccc-cccc-cCC-CCCEEECCCCCCCCCCHh-Hc-----CCCCccEEEecCCcC
Confidence            78888888888764432 1111 356 888888888887654322 22     345666677776544

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.73  E-value=7.9e-10  Score=90.47  Aligned_cols=50  Identities=28%  Similarity=0.477  Sum_probs=45.6

Q ss_pred             CCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeecCC
Q 021667           11 CDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHN   61 (309)
Q Consensus        11 ~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~~   61 (309)
                      ..|++||+||+.+||+||+++|++ ++++|||+||.++.++.+|+++-.+.
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~-~l~~vcr~Wr~la~D~~LWr~~l~rd   52 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLC-QLGSTNHYWNETVRDPILWRYFLLRD   52 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHH-HHHTTCHHHHHHHTCHHHHHHHHHSS
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHhccchHHHHHHhcc
Confidence            457899999999999999999995 99999999999999999999876654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.71  E-value=8.4e-08  Score=87.76  Aligned_cols=172  Identities=16%  Similarity=0.070  Sum_probs=98.3

Q ss_pred             CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHH--HHhcCCCcCEEEecCCCCCHHHH-HHHHhcCC
Q 021667           85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCE--AIKGFPLLEELELSYCSLSQEAL-EAVGSLCP  160 (309)
Q Consensus        85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~-~~l~~~~~  160 (309)
                      +.++.+++.. .++ ..-..+...+++|+.|+++++ .++......  ....+++|++|++++|.++.... ......++
T Consensus       310 ~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             ccceEEEeccCccc-cCCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence            4555665533 121 111223345777888888755 555433322  13456778888888876654321 23345677


Q ss_pred             CCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhH
Q 021667          161 LLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICA  240 (309)
Q Consensus       161 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~  240 (309)
                      +|+.|+++++.+..-  .  .   . ...+++|++|++++|.++.-.  .  ...++|+.|++++|......    ..++
T Consensus       388 ~L~~L~Ls~N~l~~l--p--~---~-~~~~~~L~~L~Ls~N~l~~l~--~--~~~~~L~~L~Ls~N~l~~~~----~~l~  451 (549)
T 2z81_A          388 NLTSLDISRNTFHPM--P--D---S-CQWPEKMRFLNLSSTGIRVVK--T--CIPQTLEVLDVSNNNLDSFS----LFLP  451 (549)
T ss_dssp             TCCEEECTTCCCCCC--C--S---C-CCCCTTCCEEECTTSCCSCCC--T--TSCTTCSEEECCSSCCSCCC----CCCT
T ss_pred             CCCEEECCCCCCccC--C--h---h-hcccccccEEECCCCCccccc--c--hhcCCceEEECCCCChhhhc----ccCC
Confidence            888888877655421  1  0   1 125677888888887665210  0  01246888888877544322    3566


Q ss_pred             hccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          241 ERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       241 ~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                       +|++|++++|.++...  ...     ..+.++.+|++++..
T Consensus       452 -~L~~L~Ls~N~l~~ip--~~~-----~l~~L~~L~Ls~N~l  485 (549)
T 2z81_A          452 -RLQELYISRNKLKTLP--DAS-----LFPVLLVMKISRNQL  485 (549)
T ss_dssp             -TCCEEECCSSCCSSCC--CGG-----GCTTCCEEECCSSCC
T ss_pred             -hhcEEECCCCccCcCC--Ccc-----cCccCCEEecCCCcc
Confidence             8999999999876322  111     345677788877654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.70  E-value=2.8e-09  Score=98.78  Aligned_cols=13  Identities=8%  Similarity=0.120  Sum_probs=7.0

Q ss_pred             ccCceecCCCCCC
Q 021667          242 RIRDLRHPNDSTH  254 (309)
Q Consensus       242 ~L~~L~l~~~~~~  254 (309)
                      +|+.|+|++|.++
T Consensus       302 ~L~~L~Ls~N~l~  314 (597)
T 3oja_B          302 TLKVLDLSHNHLL  314 (597)
T ss_dssp             TCCEEECCSSCCC
T ss_pred             CCcEEECCCCCCC
Confidence            5555555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.70  E-value=5.2e-10  Score=106.69  Aligned_cols=158  Identities=16%  Similarity=0.116  Sum_probs=73.2

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHH------------
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQE------------  150 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~------------  150 (309)
                      .+.++.|++.. .++. .+.. ...+++|++|++.++ .++.. +...+..+++|++|++++|.+...            
T Consensus       199 l~~L~~L~Ls~n~l~~-~~~~-l~~l~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L  274 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFST-GIPF-LGDCSALQHLDISGN-KLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL  274 (768)
T ss_dssp             CTTCCEEECCSSCCCS-CCCB-CTTCCSCCEEECCSS-CCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred             CCcCCEEECcCCcCCC-CCcc-cccCCCCCEEECcCC-cCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEE
Confidence            45677777643 2211 1111 234667777777654 33322 222344566666666666643211            


Q ss_pred             ----------HHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCe
Q 021667          151 ----------ALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLES  220 (309)
Q Consensus       151 ----------~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~  220 (309)
                                ....+...+++|++|++.++.+..      .....+. .+++|++|++++|.++...-...+..+++|++
T Consensus       275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~------~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~  347 (768)
T 3rgz_A          275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG------AVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKV  347 (768)
T ss_dssp             ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE------CCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred             ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC------ccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence                      000111123444444444332211      0111122 66777777777775542222222345677777


Q ss_pred             eecCCCCCcCc-hhHHHHHhHhccCceecCCCCC
Q 021667          221 LDLRQCFNVNL-VGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       221 L~l~~c~~~~~-~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      |++++|..... ...+....+ +|+.|++++|.+
T Consensus       348 L~Ls~n~l~~~~p~~l~~l~~-~L~~L~Ls~N~l  380 (768)
T 3rgz_A          348 LDLSFNEFSGELPESLTNLSA-SLLTLDLSSNNF  380 (768)
T ss_dssp             EECCSSEEEECCCTTHHHHTT-TCSEEECCSSEE
T ss_pred             EeCcCCccCccccHHHHhhhc-CCcEEEccCCCc
Confidence            77777654322 222222222 455555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.70  E-value=1.5e-08  Score=90.70  Aligned_cols=159  Identities=14%  Similarity=0.046  Sum_probs=82.0

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.|+++. .++.-  .  ...+++|++|+++++ .++...    +..+++|++|++++|.++.-.    ...+++|
T Consensus        63 l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~L~~L~L~~N~l~~l~----~~~l~~L  129 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSN-KLTNLD----VTPLTKLTYLNCDTNKLTKLD----VSQNPLL  129 (457)
T ss_dssp             CTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCEEECCSSCCSCCC----CTTCTTC
T ss_pred             cCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCC-CCceee----cCCCCcCCEEECCCCcCCeec----CCCCCcC
Confidence            45566666643 22221  1  223566666666654 333211    344566666666666444321    2345666


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHh
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAE  241 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~  241 (309)
                      +.|+++++.+...         .+ ..+++|++|++++| .++...    +..+++|+.|++++|.... ..  ...++ 
T Consensus       130 ~~L~l~~N~l~~l---------~l-~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~l~~-l~--l~~l~-  191 (457)
T 3bz5_A          130 TYLNCARNTLTEI---------DV-SHNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNKITE-LD--VSQNK-  191 (457)
T ss_dssp             CEEECTTSCCSCC---------CC-TTCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSCCCC-CC--CTTCT-
T ss_pred             CEEECCCCcccee---------cc-ccCCcCCEEECCCCCcccccc----cccCCcCCEEECCCCccce-ec--cccCC-
Confidence            6666665444321         01 25666666666666 333221    2245667777776654333 22  33455 


Q ss_pred             ccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccc
Q 021667          242 RIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIE  281 (309)
Q Consensus       242 ~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~  281 (309)
                      +|+.|++++|.+++..   +.     ..+.++.++++++.
T Consensus       192 ~L~~L~l~~N~l~~~~---l~-----~l~~L~~L~Ls~N~  223 (457)
T 3bz5_A          192 LLNRLNCDTNNITKLD---LN-----QNIQLTFLDCSSNK  223 (457)
T ss_dssp             TCCEEECCSSCCSCCC---CT-----TCTTCSEEECCSSC
T ss_pred             CCCEEECcCCcCCeec---cc-----cCCCCCEEECcCCc
Confidence            7777777777766542   21     33455555555543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.69  E-value=3.9e-07  Score=71.13  Aligned_cols=57  Identities=11%  Similarity=0.215  Sum_probs=32.2

Q ss_pred             HHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcC---CCcCEEEecCCCCCHHHHHHHH
Q 021667          100 LLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGF---PLLEELELSYCSLSQEALEAVG  156 (309)
Q Consensus       100 ~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~L~~~~~~~~~~~~l~  156 (309)
                      .+..+...-+.|++|+|.+...+++.+...+...+   ..|++|+|++|.+++.+...++
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA   91 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI   91 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH
Confidence            44445555566666666643456666555444433   5666666666666666554444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.69  E-value=1.5e-10  Score=106.59  Aligned_cols=160  Identities=13%  Similarity=0.012  Sum_probs=89.1

Q ss_pred             cCCCccEEEeCCCCCCCHHH-HHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQG-FCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA  185 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  185 (309)
                      .+++|+.|+++++ .++..+ ....+..+++|++|++++|.+......  ...+++|+.|++.++.+...      ....
T Consensus       345 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~------~~~~  415 (570)
T 2z63_A          345 DLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQM------SEFS  415 (570)
T ss_dssp             BCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE--EETCTTCCEEECTTSEEESC------TTSC
T ss_pred             cCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCcccccccc--ccccCCCCEEEccCCccccc------cchh
Confidence            3555666666543 222110 012233456666666666643221100  23456667776665433211      0001


Q ss_pred             HHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcC-chhHHHHHhHhccCceecCCCCCCchhhhhhhhh
Q 021667          186 IAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVN-LVGKLGKICAERIRDLRHPNDSTHDYEFGADFQD  264 (309)
Q Consensus       186 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~-~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~  264 (309)
                      ....+++|++|++++|.++.... ..+..+++|++|++++|.... ........++ +|+.|++++|.+++.....+.  
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~~~~~~--  491 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFN-GIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFN--  491 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTT--
T ss_pred             hhhcCCCCCEEeCcCCcccccch-hhhhcCCcCcEEECcCCcCccccchhhhhccc-CCCEEECCCCccccCChhhhh--
Confidence            12267788888888886553221 223467888888888876542 2223344567 899999999988776555554  


Q ss_pred             hccCCcCCCCCCCCcccc
Q 021667          265 FCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       265 ~c~~~~~l~~~~~s~~~~  282 (309)
                         ..+.++.++++++..
T Consensus       492 ---~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          492 ---SLSSLQVLNMASNQL  506 (570)
T ss_dssp             ---TCTTCCEEECCSSCC
T ss_pred             ---cccCCCEEeCCCCcC
Confidence               556778888887754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.69  E-value=2.8e-07  Score=71.92  Aligned_cols=124  Identities=15%  Similarity=0.099  Sum_probs=94.0

Q ss_pred             HHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcC---CCCcEEEeccCCCCCCCcccchhHHHHH---hcCCCCcEE
Q 021667          124 DQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLC---PLLRSFKLNNRGHRCPKIECDDDAKAIA---ENMHGLRHL  196 (309)
Q Consensus       124 ~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~l~---~~~~~L~~L  196 (309)
                      ++.+..+...-+.|++|+|+++ .+++.+...++..+   ..|+.|+|+++.+.      +.++.+++   +..+.|++|
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig------d~ga~alA~aL~~N~tL~~L  103 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS------DSEARGLIELIETSPSLRVL  103 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB------HHHHTTHHHHHHHCSSCCEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC------hHHHHHHHHHHhcCCccCeE
Confidence            4567777777899999999996 99999988777554   68999999986664      44444332   367899999


Q ss_pred             EecCCccChHHHHHHHHhCC---CCCeeecCCCC--CcCch-----hHHHHHhHhccCceecCCCCCC
Q 021667          197 QLFGNELTNVGLQAILDACP---HLESLDLRQCF--NVNLV-----GKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       197 ~l~~~~i~~~~l~~l~~~~~---~L~~L~l~~c~--~~~~~-----~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      +|.+|.|++.|...+++.+.   .|++|+|+++.  .+++.     ......-+ +|++|+++.+.+.
T Consensus       104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~-tL~~L~l~~~~~g  170 (197)
T 1pgv_A          104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE-SLLRVGISFASME  170 (197)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS-SCCEEECCCCCHH
T ss_pred             ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCC-CcCeEeccCCCcc
Confidence            99999999999999988764   49999998764  34442     22233344 8999999877653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.69  E-value=9.4e-10  Score=106.00  Aligned_cols=164  Identities=15%  Similarity=0.057  Sum_probs=89.7

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.|++++ .++... ......+++|+.|+++++..+..- -...+..+++|+.|+|++|.+...... ....+++|
T Consensus        23 p~~l~~LdLs~N~i~~i~-~~~~~~l~~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L   99 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHL   99 (844)
T ss_dssp             CTTCCEEEEESCCCCEEC-SSSCSSCCSCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSC
T ss_pred             CCCcCEEECCCCcCCccC-hhHCcccccCeEEeCCCCCCcccc-CHHHhcCCCCCCEEECCCCcCcccCHh-HccCCccc
Confidence            35667777743 222211 111234778888888766332211 012245677888888888765432111 22457788


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHh--H
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKIC--A  240 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~--~  240 (309)
                      ++|+++++.+...... .   ..+ ..+++|++|++++|.++.......+..+++|++|++++|............+  +
T Consensus       100 ~~L~Ls~n~l~~~~~~-~---~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~  174 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLK-D---GYF-RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK  174 (844)
T ss_dssp             CCEECTTCCCSSCCST-T---CCC-SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred             CEeeCcCCCCCccccc-C---ccc-cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence            8888877655421000 0   012 2677888888888866543333334567788888887765433211111111  4


Q ss_pred             hccCceecCCCCCCch
Q 021667          241 ERIRDLRHPNDSTHDY  256 (309)
Q Consensus       241 ~~L~~L~l~~~~~~d~  256 (309)
                       +|+.|++++|.++..
T Consensus       175 -~L~~L~L~~n~l~~~  189 (844)
T 3j0a_A          175 -TLSFFSLAANSLYSR  189 (844)
T ss_dssp             -SSCCCEECCSBSCCC
T ss_pred             -ccceEECCCCccccc
Confidence             777777777776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.67  E-value=4.7e-09  Score=88.22  Aligned_cols=178  Identities=19%  Similarity=0.119  Sum_probs=114.3

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.|++.. .++... ......+++|+.|+++++ .++....   ...+++|++|++++|.+..  +......+++|
T Consensus        30 ~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L  102 (290)
T 1p9a_G           30 PKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRA-ELTKLQV---DGTLPVLGTLDLSHNQLQS--LPLLGQTLPAL  102 (290)
T ss_dssp             CTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTS-CCCEEEC---CSCCTTCCEEECCSSCCSS--CCCCTTTCTTC
T ss_pred             CCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCC-ccCcccC---CCCCCcCCEEECCCCcCCc--CchhhccCCCC
Confidence            35788888854 333221 122335889999999965 4543211   1468999999999996652  22223567899


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+...  .    ...+ ..+++|++|++++|.++.-. ...+..+++|+.|++++|....-.......++ +
T Consensus       103 ~~L~l~~N~l~~l--~----~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~  173 (290)
T 1p9a_G          103 TVLDVSFNRLTSL--P----LGAL-RGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLE-N  173 (290)
T ss_dssp             CEEECCSSCCCCC--C----SSTT-TTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT-T
T ss_pred             CEEECCCCcCccc--C----HHHH-cCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCcCCccCHHHhcCcC-C
Confidence            9999998665422  1    0112 27889999999999776321 12334678999999998876554444445667 9


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV  283 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~  283 (309)
                      |+.|++++|.++......+      ....+..+++++....
T Consensus       174 L~~L~L~~N~l~~ip~~~~------~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          174 LDTLLLQENSLYTIPKGFF------GSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCEEECCSSCCCCCCTTTT------TTCCCSEEECCSCCBC
T ss_pred             CCEEECCCCcCCccChhhc------ccccCCeEEeCCCCcc
Confidence            9999999999874433222      3345666666655443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.67  E-value=1.1e-09  Score=88.16  Aligned_cols=134  Identities=13%  Similarity=0.090  Sum_probs=74.8

Q ss_pred             CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667          109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE  188 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  188 (309)
                      +.++.|+++++ .++.......+..+++|++|+|++|.++.... .....+++|+.|+++++.+...  .     .....
T Consensus        32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~--~-----~~~~~  102 (220)
T 2v70_A           32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSNRLENV--Q-----HKMFK  102 (220)
T ss_dssp             TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCCC--C-----GGGGT
T ss_pred             CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCCccCcc--C-----HhHhc
Confidence            34566776644 33322111224457777777777775543211 1123467777777776555322  1     11122


Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      .+++|++|++++|.++..... .+..+++|+.|++++|...+........++ +|+.|++++|++
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l  165 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTVAPGAFDTLH-SLSTLNLLANPF  165 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTTTTTCT-TCCEEECCSCCE
T ss_pred             CCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEECHHHhcCCC-CCCEEEecCcCC
Confidence            677788888887766532111 123567788888877665443233334556 788888888875

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.67  E-value=1.2e-09  Score=91.18  Aligned_cols=138  Identities=14%  Similarity=0.153  Sum_probs=92.9

Q ss_pred             CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667          109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE  188 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  188 (309)
                      ++|++|+++++ .++.... ..+..+++|++|++++|.+...... ....+++|++|+++++.+...      ....+. 
T Consensus        28 ~~l~~L~ls~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~------~~~~~~-   97 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSL------ALGAFS-   97 (276)
T ss_dssp             TTCCEEECTTC-CCCEECT-TTTTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEE------CTTTTT-
T ss_pred             CCccEEECCCC-cccccCH-hHhccccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccCcc------Chhhhc-
Confidence            47899999865 4543221 1345689999999999976532211 234578999999987655321      111223 


Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc-hhHHHHHhHhccCceecCCCCCCchhh
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL-VGKLGKICAERIRDLRHPNDSTHDYEF  258 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~-~~~l~~~~~~~L~~L~l~~~~~~d~~~  258 (309)
                      .+++|++|++.+|.++...... +..+++|++|+++++..... .......++ +|++|++++|.+++...
T Consensus        98 ~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~-~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           98 GLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECG
T ss_pred             CCccccEEECCCCCccccCchh-cccCCCCCEEECcCCccceecCchhhccCC-CCCEEECCCCCCCcCCH
Confidence            7899999999999766422211 34689999999999875542 234445667 99999999999876543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.67  E-value=2.2e-09  Score=86.95  Aligned_cols=133  Identities=18%  Similarity=0.094  Sum_probs=82.0

Q ss_pred             CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667          109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE  188 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  188 (309)
                      ++|+.|+|+++ .++... ...+..+++|++|+|++|.+..-. ......+++|+.|+++++.+...  .     .....
T Consensus        40 ~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l--~-----~~~~~  109 (229)
T 3e6j_A           40 TNAQILYLHDN-QITKLE-PGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVL--P-----SAVFD  109 (229)
T ss_dssp             TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCC--C-----TTTTT
T ss_pred             CCCCEEEcCCC-ccCccC-HHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCcc--C-----hhHhC
Confidence            67888888765 333211 123445788888888888654211 11224578888888887655422  1     11122


Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      .+++|++|++++|.++.  +..-+..+++|++|+++++....-.......++ +|+.|++++|+++
T Consensus       110 ~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~  172 (229)
T 3e6j_A          110 RLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS-SLTHAYLFGNPWD  172 (229)
T ss_dssp             TCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECTTSCBC
T ss_pred             cchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHHHHhCCC-CCCEEEeeCCCcc
Confidence            67888888888887662  212235678888888888765443333445566 8888888888864

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.66  E-value=2.3e-09  Score=85.46  Aligned_cols=112  Identities=15%  Similarity=0.120  Sum_probs=52.0

Q ss_pred             hcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHH
Q 021667          132 KGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAI  211 (309)
Q Consensus       132 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l  211 (309)
                      ..+++|++|+++++.+... .......+++|++|+++++.+...  .     ......+++|++|++++|.++.... ..
T Consensus        49 ~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~--~-----~~~~~~l~~L~~L~L~~N~l~~~~~-~~  119 (208)
T 2o6s_A           49 DELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSL--P-----NGVFDKLTQLKELALNTNQLQSLPD-GV  119 (208)
T ss_dssp             TTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCCT-TT
T ss_pred             cccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCCcc--C-----HhHhcCccCCCEEEcCCCcCcccCH-hH
Confidence            3455666666666544321 011123355666666655443311  0     0111245666666666665442111 11


Q ss_pred             HHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          212 LDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       212 ~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      +..+++|++|+++++............++ +|+.|++++|++
T Consensus       120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~  160 (208)
T 2o6s_A          120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHDNPW  160 (208)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSCCB
T ss_pred             hccCCcCCEEECCCCccceeCHHHhccCC-CccEEEecCCCe
Confidence            23455666666666543332222233445 666666666654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.66  E-value=3.7e-09  Score=84.23  Aligned_cols=137  Identities=16%  Similarity=0.073  Sum_probs=95.2

Q ss_pred             CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHH
Q 021667          134 FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILD  213 (309)
Q Consensus       134 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~  213 (309)
                      .++|++|+++++.++... ......+++|++|+++++.+...  .     ......+++|++|++++|.++.-. ...+.
T Consensus        27 ~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~-----~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~   97 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSL--P-----NGVFNKLTSLTYLNLSTNQLQSLP-NGVFD   97 (208)
T ss_dssp             CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCC-TTTTT
T ss_pred             CCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCCccCcc--C-----hhhcCCCCCcCEEECCCCcCCccC-HhHhc
Confidence            468999999999665321 12235689999999998665422  1     112237899999999999776321 12245


Q ss_pred             hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      .+++|++|+++++............++ +|++|++++|.+++.....+.     ..+.++.+++++.....+
T Consensus        98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~  163 (208)
T 2o6s_A           98 KLTQLKELALNTNQLQSLPDGVFDKLT-QLKDLRLYQNQLKSVPDGVFD-----RLTSLQYIWLHDNPWDCT  163 (208)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSCCBCCC
T ss_pred             CccCCCEEEcCCCcCcccCHhHhccCC-cCCEEECCCCccceeCHHHhc-----cCCCccEEEecCCCeecC
Confidence            789999999999875543334445677 999999999998765554443     456788888887766544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.66  E-value=1.5e-08  Score=87.48  Aligned_cols=161  Identities=13%  Similarity=0.070  Sum_probs=78.8

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .++++.|++.. .++.-........+++|++|++.++..++... ...+..+++|++|++++|.+....... ...+++|
T Consensus       123 l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L  200 (353)
T 2z80_A          123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNV  200 (353)
T ss_dssp             CTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEE
T ss_pred             CccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-HHHccCCCCCCEEECCCCCcCccCHHH-HhccccC
Confidence            56778888753 22210000122346777777777553232211 112234566666666665443221111 1224455


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEe---------------------------cCCccChHHHHH---HH
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQL---------------------------FGNELTNVGLQA---IL  212 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l---------------------------~~~~i~~~~l~~---l~  212 (309)
                      ++|+++++.+.       .........+++|+.|++                           .++.+++.++..   .+
T Consensus       201 ~~L~l~~n~l~-------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l  273 (353)
T 2z80_A          201 SHLILHMKQHI-------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL  273 (353)
T ss_dssp             EEEEEECSCST-------THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHH
T ss_pred             CeecCCCCccc-------cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHH
Confidence            55555543221       111112223444455444                           444444444333   24


Q ss_pred             HhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667          213 DACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       213 ~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      ..+++|+.|++++|...+-...+...++ +|+.|++++|+++
T Consensus       274 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~-~L~~L~L~~N~~~  314 (353)
T 2z80_A          274 NQISGLLELEFSRNQLKSVPDGIFDRLT-SLQKIWLHTNPWD  314 (353)
T ss_dssp             HTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCBC
T ss_pred             hcccCCCEEECCCCCCCccCHHHHhcCC-CCCEEEeeCCCcc
Confidence            4677788888877765433333335566 7888888888753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=2.1e-07  Score=80.44  Aligned_cols=157  Identities=15%  Similarity=0.180  Sum_probs=105.1

Q ss_pred             cCCCceEEeccccCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHh-cCCCcCEEEecCC--C-CCHH---HHHHH
Q 021667           83 SNGQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIK-GFPLLEELELSYC--S-LSQE---ALEAV  155 (309)
Q Consensus        83 ~~~~l~~l~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~--~-~~~~---~~~~l  155 (309)
                      ..|+|+.|.+....... +..+  ..++|++|.|..+ .++..++..+.. .+|+|++|+|+.+  . ..+.   .+..+
T Consensus       170 ~~P~L~~L~L~g~~~l~-l~~~--~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLS-IGKK--PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             TCTTCCEEEEECCBTCB-CCSC--BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             cCCCCcEEEEeCCCCce-eccc--cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            36899999995431111 1111  3789999999955 788888887764 6899999999642  1 1111   12222


Q ss_pred             H--hcCCCCcEEEeccCCCCCCCcccchhHHHHH--hcCCCCcEEEecCCccChHHHHHHHH---hCCCCCeeecCCCCC
Q 021667          156 G--SLCPLLRSFKLNNRGHRCPKIECDDDAKAIA--ENMHGLRHLQLFGNELTNVGLQAILD---ACPHLESLDLRQCFN  228 (309)
Q Consensus       156 ~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~i~~~~l~~l~~---~~~~L~~L~l~~c~~  228 (309)
                      .  ..+|+|+.|.+.+|.+.      +.....++  ..+|+|++|+|+.|.+++.+...+..   .+++|+.|+|++|. 
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~------~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-  318 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQ------NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-  318 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTH------HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-
T ss_pred             HhcCCCCCcCEEeCCCCCCc------hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-
Confidence            2  35899999999865442      33444454  36889999999999999999888764   47899999999875 


Q ss_pred             cCchhHHHHHhHhcc-CceecCCCC
Q 021667          229 VNLVGKLGKICAERI-RDLRHPNDS  252 (309)
Q Consensus       229 ~~~~~~l~~~~~~~L-~~L~l~~~~  252 (309)
                      +++..  .....+.+ ..++++++.
T Consensus       319 i~d~~--~~~l~~alg~~~~~~~~~  341 (362)
T 2ra8_A          319 LSDEM--KKELQKSLPMKIDVSDSQ  341 (362)
T ss_dssp             CCHHH--HHHHHHHCCSEEECCSBC
T ss_pred             CCHHH--HHHHHHHcCCEEEecCCc
Confidence            55422  22222113 557887766

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.65  E-value=4.7e-09  Score=81.36  Aligned_cols=131  Identities=15%  Similarity=0.140  Sum_probs=92.1

Q ss_pred             cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667          133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL  212 (309)
Q Consensus       133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~  212 (309)
                      .+++|++|++++|.++.  +..+....++|+.|+++++.+...        ..+. .+++|++|++++|.++.-. ..++
T Consensus        17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~--------~~l~-~l~~L~~L~Ls~N~l~~~~-~~~~   84 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL--------DGFP-LLRRLKTLLVNNNRICRIG-EGLD   84 (176)
T ss_dssp             CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE--------CCCC-CCSSCCEEECCSSCCCEEC-SCHH
T ss_pred             CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc--------cccc-cCCCCCEEECCCCcccccC-cchh
Confidence            46899999999997763  234455566999999998665421        2233 7899999999999887421 1234


Q ss_pred             HhCCCCCeeecCCCCCcCchhH--HHHHhHhccCceecCCCCCCchhhh---hhhhhhccCCcCCCCCCCCcccc
Q 021667          213 DACPHLESLDLRQCFNVNLVGK--LGKICAERIRDLRHPNDSTHDYEFG---ADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       213 ~~~~~L~~L~l~~c~~~~~~~~--l~~~~~~~L~~L~l~~~~~~d~~~~---~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      ..+++|++|++++|... ....  ....++ +|+.|++++|++++....   .+.     ..+.+..+|++.+..
T Consensus        85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~-~L~~L~l~~N~i~~~~~~~~~~~~-----~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           85 QALPDLTELILTNNSLV-ELGDLDPLASLK-SLTYLCILRNPVTNKKHYRLYVIY-----KVPQVRVLDFQKVKL  152 (176)
T ss_dssp             HHCTTCCEEECCSCCCC-CGGGGGGGGGCT-TCCEEECCSSGGGGSTTHHHHHHH-----HCTTCSEETTEECCH
T ss_pred             hcCCCCCEEECCCCcCC-cchhhHhhhcCC-CCCEEEecCCCCCCcHhHHHHHHH-----HCCccceeCCCcCCH
Confidence            57999999999998753 3333  345677 999999999998644322   232     456777778776543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.65  E-value=9e-10  Score=102.17  Aligned_cols=163  Identities=12%  Similarity=0.028  Sum_probs=94.1

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      .+++|+.|++.++ .++.......+..+++|++|++++|.+..... .....+++|++|+++++.+...      .....
T Consensus       397 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~------~~~~~  468 (606)
T 3vq2_A          397 GLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGNSFKDN------TLSNV  468 (606)
T ss_dssp             TCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTCEEGGG------EECSC
T ss_pred             CCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCCCCccch-hhhcCCCCCCEEECCCCcCCCc------chHHh
Confidence            4788889988865 33222111234567888888888885543211 1234578888888876544310      01111


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhc
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFC  266 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c  266 (309)
                      ...+++|++|++++|.++..... .+..+++|++|++++|...+........++ +|+.|++++|.++..... +.    
T Consensus       469 ~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~p~~-~~----  541 (606)
T 3vq2_A          469 FANTTNLTFLDLSKCQLEQISWG-VFDTLHRLQLLNMSHNNLLFLDSSHYNQLY-SLSTLDCSFNRIETSKGI-LQ----  541 (606)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCSCEEGGGTTTCT-TCCEEECTTSCCCCEESC-GG----
T ss_pred             hccCCCCCEEECCCCcCCccChh-hhcccccCCEEECCCCcCCCcCHHHccCCC-cCCEEECCCCcCcccCHh-Hh----
Confidence            22677888888888866643222 233577788888887765554334444556 788888888877643222 21    


Q ss_pred             cCCc-CCCCCCCCccccCCC
Q 021667          267 WSSV-EDYPSGISDIELVSD  285 (309)
Q Consensus       267 ~~~~-~l~~~~~s~~~~~~d  285 (309)
                       ..+ .+..+++++....-|
T Consensus       542 -~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          542 -HFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             -GSCTTCCEEECCSCCCCCS
T ss_pred             -hhcccCcEEEccCCCcccC
Confidence             222 356666666555433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.65  E-value=5.7e-09  Score=86.41  Aligned_cols=149  Identities=18%  Similarity=0.129  Sum_probs=105.7

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      .+++|+.|++.++ .++..  . -+..+++|++|+|++|.+++...   ...+++|+.|+++++.+...  .      .+
T Consensus        39 ~l~~L~~L~l~~n-~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l--~------~~  103 (263)
T 1xeu_A           39 ELSGVQNFNGDNS-NIQSL--A-GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNL--N------GI  103 (263)
T ss_dssp             HHTTCSEEECTTS-CCCCC--T-TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCC--T------TC
T ss_pred             hcCcCcEEECcCC-Ccccc--h-HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCc--C------cc
Confidence            3689999999976 45432  1 24578999999999997764322   45689999999998766532  1      11


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhc
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFC  266 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c  266 (309)
                      . . ++|++|++++|.++.-  . -+..+++|+.|++++|...+ .. ....++ +|+.|++++|.+++.  ..+.    
T Consensus       104 ~-~-~~L~~L~L~~N~l~~~--~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~-~L~~L~L~~N~i~~~--~~l~----  169 (263)
T 1xeu_A          104 P-S-ACLSRLFLDNNELRDT--D-SLIHLKNLEILSIRNNKLKS-IV-MLGFLS-KLEVLDLHGNEITNT--GGLT----  169 (263)
T ss_dssp             C-C-SSCCEEECCSSCCSBS--G-GGTTCTTCCEEECTTSCCCB-CG-GGGGCT-TCCEEECTTSCCCBC--TTST----
T ss_pred             c-c-CcccEEEccCCccCCC--h-hhcCcccccEEECCCCcCCC-Ch-HHccCC-CCCEEECCCCcCcch--HHhc----
Confidence            2 2 8999999999988753  2 24578999999999877443 33 344567 899999999998876  3333    


Q ss_pred             cCCcCCCCCCCCccccCCC
Q 021667          267 WSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       267 ~~~~~l~~~~~s~~~~~~d  285 (309)
                       ..+.+..+++++......
T Consensus       170 -~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          170 -RLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             -TCCCCCEEEEEEEEEECC
T ss_pred             -cCCCCCEEeCCCCcccCC
Confidence             456777777777665443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.64  E-value=1.4e-09  Score=98.12  Aligned_cols=152  Identities=14%  Similarity=-0.021  Sum_probs=92.0

Q ss_pred             CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667          109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE  188 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  188 (309)
                      ++|+.|+++++ .++...    ...+++|+.|+|++|.++...... ...+++|+.|+++++.+..      .....+..
T Consensus        99 ~~L~~L~L~~N-~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~------~~~~~l~~  166 (487)
T 3oja_A           99 PSIETLHAANN-NISRVS----CSRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDT------VNFAELAA  166 (487)
T ss_dssp             TTCCEEECCSS-CCCCEE----ECCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCE------EEGGGGGG
T ss_pred             CCcCEEECcCC-cCCCCC----ccccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCC------cChHHHhh
Confidence            55556665544 333211    124678889999888766432111 2347888899888765542      12233334


Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWS  268 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~  268 (309)
                      .+++|++|+|++|.++...  . ...+++|+.|++++|........ ...++ +|+.|++++|.++..... +.     .
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~--~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~-~L~~L~Ls~N~l~~lp~~-l~-----~  235 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDVK--G-QVVFAKLKTLDLSSNKLAFMGPE-FQSAA-GVTWISLRNNKLVLIEKA-LR-----F  235 (487)
T ss_dssp             GTTTCCEEECTTSCCCEEE--C-CCCCTTCCEEECCSSCCCEECGG-GGGGT-TCSEEECTTSCCCEECTT-CC-----C
T ss_pred             hCCcccEEecCCCcccccc--c-cccCCCCCEEECCCCCCCCCCHh-HcCCC-CccEEEecCCcCcccchh-hc-----c
Confidence            6788999999988776431  1 11477889999988765443233 44566 889999999887642111 11     3


Q ss_pred             CcCCCCCCCCccccC
Q 021667          269 SVEDYPSGISDIELV  283 (309)
Q Consensus       269 ~~~l~~~~~s~~~~~  283 (309)
                      .+.+..++++++...
T Consensus       236 l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          236 SQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CTTCCEEECTTCCBC
T ss_pred             CCCCCEEEcCCCCCc
Confidence            456667777766554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.62  E-value=5.6e-09  Score=96.71  Aligned_cols=40  Identities=18%  Similarity=0.049  Sum_probs=16.8

Q ss_pred             hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667          214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      .+++|+.|++++|............++ +|+.|+|++|.++
T Consensus       252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~  291 (597)
T 3oja_B          252 NYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNNRLV  291 (597)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCS-SCCEEECTTSCCC
T ss_pred             cCCCCCEEECCCCccCCCCHHHhcCcc-CCCEEECCCCCCC
Confidence            344444444444433222122222334 4555555555544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.62  E-value=3.3e-09  Score=85.37  Aligned_cols=141  Identities=16%  Similarity=0.104  Sum_probs=96.9

Q ss_pred             CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667          109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE  188 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  188 (309)
                      ++|+.|++.++ .++... ...+..+++|+.|+|++|.+...... ....+++|+.|+++++.+...  .     .....
T Consensus        32 ~~l~~L~l~~n-~i~~i~-~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l--~-----~~~f~  101 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIP-PGAFSPYKKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKITEL--P-----KSLFE  101 (220)
T ss_dssp             TTCCEEECCSS-CCCEEC-TTSSTTCTTCCEEECCSSCCCEECTT-TTTTCSSCCEEECCSSCCCCC--C-----TTTTT
T ss_pred             cCCCEEECCCC-cCCCcC-HhHhhCCCCCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCCCcCCcc--C-----HhHcc
Confidence            68999999965 444211 11345689999999999977542112 234579999999998766522  1     11223


Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC-Cchhhhhh
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST-HDYEFGAD  261 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~-~d~~~~~~  261 (309)
                      .+++|++|+|++|.++..... .+..+++|++|++++|...+........++ +|+.|++++|++ -|..+..+
T Consensus       102 ~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~~c~c~l~~l  173 (220)
T 2v9t_B          102 GLFSLQLLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFSPLR-AIQTMHLAQNPFICDCHLKWL  173 (220)
T ss_dssp             TCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCEECSGGGHHH
T ss_pred             CCCCCCEEECCCCCCCEeCHH-HcCCCCCCCEEECCCCcCCEECHHHHhCCC-CCCEEEeCCCCcCCCCccHHH
Confidence            789999999999977643222 234689999999999876554434445567 999999999996 45555444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.61  E-value=7.5e-09  Score=95.17  Aligned_cols=134  Identities=13%  Similarity=0.124  Sum_probs=58.1

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHH-HHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQE-ALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA  185 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  185 (309)
                      .+++|++|+++++ .++.. ....+..+++|++|++++|.++.- .+......+++|+.|+++++.+... +.     ..
T Consensus       351 ~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~-----~~  422 (562)
T 3a79_B          351 SPSSFTFLNFTQN-VFTDS-VFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-AY-----DR  422 (562)
T ss_dssp             SCCCCCEEECCSS-CCCTT-TTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-CS-----SC
T ss_pred             CCCCceEEECCCC-ccccc-hhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-cC-----hh
Confidence            3566666666644 33321 111223456666666666655431 1122223456666666665443320 00     00


Q ss_pred             HHhcCCCCcEEEecCCccChHHHHHHHHhC-CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667          186 IAENMHGLRHLQLFGNELTNVGLQAILDAC-PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       186 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~-~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      ....+++|++|++++|.++....    ... ++|+.|++++|....-...+. .++ +|+.|++++|.++
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~~~----~~l~~~L~~L~L~~N~l~~ip~~~~-~l~-~L~~L~L~~N~l~  486 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGSVF----RCLPPKVKVLDLHNNRIMSIPKDVT-HLQ-ALQELNVASNQLK  486 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGGGG----SSCCTTCSEEECCSSCCCCCCTTTT-SSC-CCSEEECCSSCCC
T ss_pred             hhcCcccCCEEECCCCCCCcchh----hhhcCcCCEEECCCCcCcccChhhc-CCC-CCCEEECCCCCCC
Confidence            11134555555555555543211    122 345555555543222111122 344 5555555555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.60  E-value=7.7e-09  Score=97.22  Aligned_cols=184  Identities=16%  Similarity=0.068  Sum_probs=97.0

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.|+++. .++...-.. ...+++|++|+++++ .++... ...+..+++|++|++++|.+...... ....+++|
T Consensus        48 l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L  123 (680)
T 1ziw_A           48 YSQLTSLDVGFNTISKLEPEL-CQKLPMLKVLNLQHN-ELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNN-PFVKQKNL  123 (680)
T ss_dssp             GTTCSEEECCSSCCCCCCTTH-HHHCTTCCEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSCCCCCCSC-TTTTCTTC
T ss_pred             CCcCcEEECCCCccCccCHHH-HhcccCcCEEECCCC-ccCccC-hhhhccCCCCCEEECCCCccCccChh-HccccCCC
Confidence            46777777753 232211122 234778888888755 333110 11234577888888887755321111 12346778


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH-HhCCCCCeeecCCCCCcCchhHHHH----
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL-DACPHLESLDLRQCFNVNLVGKLGK----  237 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~-~~~~~L~~L~l~~c~~~~~~~~l~~----  237 (309)
                      ++|+++++.+....      ...+ ..+++|++|++++|.++......+. ..+++|+.|++++|...........    
T Consensus       124 ~~L~Ls~n~l~~~~------~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  196 (680)
T 1ziw_A          124 ITLDLSHNGLSSTK------LGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR  196 (680)
T ss_dssp             CEEECCSSCCSCCC------CCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSE
T ss_pred             CEEECCCCcccccC------chhh-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhh
Confidence            88888765543220      0111 2677888888888766533222221 1356788888877643322111111    


Q ss_pred             -----------------------HhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          238 -----------------------ICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       238 -----------------------~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                                             ..+ +|+.|++++|.+++.....+. . + ....++.++++++..
T Consensus       197 L~~L~l~~~~l~~~~~~~~~~~l~~~-~L~~L~L~~n~l~~~~~~~~~-~-l-~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          197 LFGLFLNNVQLGPSLTEKLCLELANT-SIRNLSLSNSQLSTTSNTTFL-G-L-KWTNLTMLDLSYNNL  260 (680)
T ss_dssp             ECEEECTTCCCHHHHHHHHHHHHTTS-CCCEEECTTSCCCEECTTTTG-G-G-GGSCCCEEECTTSCC
T ss_pred             hhhhhccccccChhhHHHHHHHhhhc-cccEEEccCCcccccChhHhh-c-c-CcCCCCEEECCCCCc
Confidence                                   113 677777777776655444443 1 1 123477777776643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.60  E-value=4.2e-09  Score=84.79  Aligned_cols=138  Identities=16%  Similarity=0.071  Sum_probs=95.7

Q ss_pred             CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHH
Q 021667          134 FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILD  213 (309)
Q Consensus       134 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~  213 (309)
                      .+.+++|+|++|.++..........+++|+.|+++++.+...    .  ...+. .+++|++|+|++|.++..... .+.
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i----~--~~~~~-~l~~L~~L~Ls~N~l~~~~~~-~~~  102 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI----E--EGAFE-GASGVNEILLTSNRLENVQHK-MFK  102 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE----C--TTTTT-TCTTCCEEECCSSCCCCCCGG-GGT
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE----C--HHHhC-CCCCCCEEECCCCccCccCHh-Hhc
Confidence            357899999999776432122235689999999997655421    1  11233 789999999999977643222 244


Q ss_pred             hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      .+++|++|+++++............++ +|+.|+|++|.++......+.     ..+.+..+++++..+.-|
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGNDSFIGLS-SVRLLSLYDNQITTVAPGAFD-----TLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCTTSSTTCT-TCSEEECTTSCCCCBCTTTTT-----TCTTCCEEECCSCCEECS
T ss_pred             CCcCCCEEECCCCcCCeECHhHcCCCc-cCCEEECCCCcCCEECHHHhc-----CCCCCCEEEecCcCCcCC
Confidence            789999999999876554333344567 999999999998776555554     455777778877665444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.60  E-value=4.4e-09  Score=98.86  Aligned_cols=161  Identities=17%  Similarity=0.123  Sum_probs=105.3

Q ss_pred             CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667           85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR  163 (309)
Q Consensus        85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  163 (309)
                      +.++.|+++. .++... ......+++|++|+++++ .++... ...+..+++|++|+|++|.+..-.. .....+++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~  100 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGFN-TISKLE-PELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNLT  100 (680)
T ss_dssp             TTCSEEECCSSCCCCCC-GGGGGGGTTCSEEECCSS-CCCCCC-TTHHHHCTTCCEEECCSSCCCCCCT-TTTTTCTTCS
T ss_pred             CCCcEEECCCCCCCCcC-HHHHhCCCcCcEEECCCC-ccCccC-HHHHhcccCcCEEECCCCccCccCh-hhhccCCCCC
Confidence            5788888864 333211 122345899999999965 444221 2235579999999999996653211 1234589999


Q ss_pred             EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHH--HHhHh
Q 021667          164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLG--KICAE  241 (309)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~--~~~~~  241 (309)
                      +|+++++.+...  . .   ..+. .+++|++|++++|.++...... +..+++|++|++++|..........  ..++ 
T Consensus       101 ~L~L~~n~l~~~--~-~---~~~~-~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-  171 (680)
T 1ziw_A          101 ELHLMSNSIQKI--K-N---NPFV-KQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANS-  171 (680)
T ss_dssp             EEECCSSCCCCC--C-S---CTTT-TCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTC-
T ss_pred             EEECCCCccCcc--C-h---hHcc-ccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccc-
Confidence            999998665422  1 0   1223 7899999999999776432222 2368899999999987544332222  2346 


Q ss_pred             ccCceecCCCCCCchhh
Q 021667          242 RIRDLRHPNDSTHDYEF  258 (309)
Q Consensus       242 ~L~~L~l~~~~~~d~~~  258 (309)
                      +|++|++++|.+++...
T Consensus       172 ~L~~L~L~~n~l~~~~~  188 (680)
T 1ziw_A          172 SLKKLELSSNQIKEFSP  188 (680)
T ss_dssp             EESEEECTTCCCCCBCT
T ss_pred             cccEEECCCCcccccCh
Confidence            89999999998765543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.59  E-value=4.7e-09  Score=91.98  Aligned_cols=156  Identities=14%  Similarity=0.101  Sum_probs=98.5

Q ss_pred             CCCceEEecccc-CChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEYF-GTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~~-~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      ..+++.+++... ++. .-..+...+++|+.|++.++ .++.... ..+..+++|++|+|++|.+..... .....+++|
T Consensus        44 l~~l~~l~l~~~~l~~-l~~~~~~~l~~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L  119 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRK-LPAALLDSFRQVELLNLNDL-QIEEIDT-YAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLL  119 (390)
T ss_dssp             GCCCSEEEEESCEESE-ECTHHHHHCCCCSEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred             cCCceEEEecCCchhh-CChhHhcccccCcEEECCCC-cccccCh-hhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCC
Confidence            457777877542 221 11233345889999999966 4443211 134568999999999996654221 123457899


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|+++++.+...  .     ..+...+++|++|++++|.++..... .+..+++|++|++++|..... .  ...++ +
T Consensus       120 ~~L~L~~n~l~~l--~-----~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~--~~~l~-~  187 (390)
T 3o6n_A          120 TVLVLERNDLSSL--P-----RGIFHNTPKLTTLSMSNNNLERIEDD-TFQATTSLQNLQLSSNRLTHV-D--LSLIP-S  187 (390)
T ss_dssp             CEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCBCCTT-TTSSCTTCCEEECCSSCCSBC-C--GGGCT-T
T ss_pred             CEEECCCCccCcC--C-----HHHhcCCCCCcEEECCCCccCccChh-hccCCCCCCEEECCCCcCCcc-c--ccccc-c
Confidence            9999987665421  1     11223789999999999977643222 234678999999998765432 1  23345 7


Q ss_pred             cCceecCCCCCCc
Q 021667          243 IRDLRHPNDSTHD  255 (309)
Q Consensus       243 L~~L~l~~~~~~d  255 (309)
                      |+.|++++|.++.
T Consensus       188 L~~L~l~~n~l~~  200 (390)
T 3o6n_A          188 LFHANVSYNLLST  200 (390)
T ss_dssp             CSEEECCSSCCSE
T ss_pred             cceeecccccccc
Confidence            8888888877654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.59  E-value=3.4e-09  Score=91.93  Aligned_cols=166  Identities=21%  Similarity=0.117  Sum_probs=101.6

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      ...++.|++++ .++.-....+...+++|+.|+|.++ .++... ...+..+++|++|+|++|.+.... ......+++|
T Consensus        38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L  114 (361)
T 2xot_A           38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQAL  114 (361)
T ss_dssp             CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTC
T ss_pred             CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccC-hhhccCCCCCCEEECCCCcCCcCC-HHHhCCCcCC
Confidence            34577888854 3332111122226889999999865 454221 113456899999999999765321 1123457899


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHH--HHhCCCCCeeecCCCCCcCchhHHHHHhH
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAI--LDACPHLESLDLRQCFNVNLVGKLGKICA  240 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l--~~~~~~L~~L~l~~c~~~~~~~~l~~~~~  240 (309)
                      +.|+++++.+...      ....+. .+++|++|+|++|.++.-....+  ...+++|+.|+|+++....-........+
T Consensus       115 ~~L~L~~N~i~~~------~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  187 (361)
T 2xot_A          115 EVLLLYNNHIVVV------DRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP  187 (361)
T ss_dssp             CEEECCSSCCCEE------CTTTTT-TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred             CEEECCCCcccEE------CHHHhC-CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence            9999987655421      111223 78999999999997764211111  13588999999998775543333444444


Q ss_pred             hc--cCceecCCCCC-Cchhhhh
Q 021667          241 ER--IRDLRHPNDST-HDYEFGA  260 (309)
Q Consensus       241 ~~--L~~L~l~~~~~-~d~~~~~  260 (309)
                       .  ++.|+|++|++ -|..+..
T Consensus       188 -~~~l~~l~l~~N~~~C~C~l~~  209 (361)
T 2xot_A          188 -AWVKNGLYLHNNPLECDCKLYQ  209 (361)
T ss_dssp             -HHHHTTEECCSSCEECCHHHHH
T ss_pred             -HhhcceEEecCCCccCCcCcHH
Confidence             4  58899999996 4555443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.59  E-value=1.3e-08  Score=93.63  Aligned_cols=133  Identities=13%  Similarity=0.131  Sum_probs=62.1

Q ss_pred             cCCCccEEEeCCCCCCCH-HHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667          107 RSRNLRNLRLVSCYNISD-QGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA  185 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  185 (309)
                      .+++|+.|+++++ .++. ..+...+..+++|++|++++|.+...........+++|+.|+++++.+...          
T Consensus       375 ~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~----------  443 (562)
T 3a79_B          375 TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS----------  443 (562)
T ss_dssp             SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG----------
T ss_pred             ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc----------
Confidence            3566666666644 3332 223333445566666666666443211111123345666666665433210          


Q ss_pred             HHhcC-CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          186 IAENM-HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       186 l~~~~-~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      +...+ ++|+.|++++|.++.  +..-+..+++|++|++++|...+-.......++ +|+.|++++|++
T Consensus       444 ~~~~l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~-~L~~L~l~~N~~  509 (562)
T 3a79_B          444 VFRCLPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQLKSVPDGVFDRLT-SLQYIWLHDNPW  509 (562)
T ss_dssp             GGSSCCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCT-TCCCEECCSCCB
T ss_pred             hhhhhcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCC-CCCEEEecCCCc
Confidence            11122 466666666665541  111111455666666666544332222233445 666666666664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.57  E-value=3.8e-09  Score=98.59  Aligned_cols=60  Identities=10%  Similarity=-0.026  Sum_probs=24.6

Q ss_pred             CCCcEEEecCCccChHHHHH--HHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667          191 HGLRHLQLFGNELTNVGLQA--ILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       191 ~~L~~L~l~~~~i~~~~l~~--l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      ++|++|++++|.++  .+..  .+..+++|++|++++|.....+. ....++ +|+.|++++|.++
T Consensus       305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~  366 (636)
T 4eco_A          305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT  366 (636)
T ss_dssp             GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE
T ss_pred             CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc
Confidence            44444444444443  1111  23344445555554444331222 112233 4555555555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.57  E-value=3.5e-09  Score=85.23  Aligned_cols=136  Identities=18%  Similarity=0.184  Sum_probs=87.7

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      ...++.|++.. .++... ......+++|+.|+|+++ .++... ...+..+++|++|+|++|.++.- ...+...+++|
T Consensus        31 ~~~l~~L~l~~n~i~~i~-~~~~~~l~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L  106 (220)
T 2v9t_B           31 PETITEIRLEQNTIKVIP-PGAFSPYKKLRRIDLSNN-QISELA-PDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSL  106 (220)
T ss_dssp             CTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECCSS-CCCEEC-TTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred             CcCCCEEECCCCcCCCcC-HhHhhCCCCCCEEECCCC-cCCCcC-HHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCC
Confidence            35788888854 332211 112245789999999965 444211 12345689999999999966531 11223557899


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL  231 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~  231 (309)
                      +.|+++++.+...  .    ...+. .+++|++|+|++|.++..... .+..+++|+.|++++++..-+
T Consensus       107 ~~L~L~~N~l~~~--~----~~~~~-~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          107 QLLLLNANKINCL--R----VDAFQ-DLHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CEEECCSSCCCCC--C----TTTTT-TCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEECCSSCEECS
T ss_pred             CEEECCCCCCCEe--C----HHHcC-CCCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEeCCCCcCCC
Confidence            9999998766532  1    11222 789999999999977643222 234688999999999875443

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.57  E-value=1.5e-08  Score=83.83  Aligned_cols=49  Identities=16%  Similarity=0.403  Sum_probs=43.9

Q ss_pred             CCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceee
Q 021667           10 SCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNID   58 (309)
Q Consensus        10 ~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~   58 (309)
                      ...+..||+|+|..||++|+.++++.++++|||+|+.++.++.+|+..-
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~   96 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKC   96 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHh
Confidence            3578899999999999999999993399999999999999999998654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.55  E-value=3.2e-09  Score=90.93  Aligned_cols=178  Identities=16%  Similarity=0.091  Sum_probs=85.3

Q ss_pred             CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667           85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR  163 (309)
Q Consensus        85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  163 (309)
                      +.++.|++.. .++... ......+++|++|++.++ .++... ...+..+++|++|++++|.+..-.    ....++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~----~~~~~~L~  126 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNN-KISKIH-EKAFSPLRKLQKLYISKNHLVEIP----PNLPSSLV  126 (332)
T ss_dssp             TTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS-CCCEEC-GGGSTTCTTCCEEECCSSCCCSCC----SSCCTTCC
T ss_pred             CCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCC-ccCccC-HhHhhCcCCCCEEECCCCcCCccC----ccccccCC
Confidence            4566666643 222111 111234667777777654 333211 112345677777777776443110    01125666


Q ss_pred             EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHH-HHHHh--------------------CCCCCeee
Q 021667          164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQ-AILDA--------------------CPHLESLD  222 (309)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~-~l~~~--------------------~~~L~~L~  222 (309)
                      +|++.++.+...  .     ......+++|++|++++|.++..+.. ..+..                    .++|++|+
T Consensus       127 ~L~l~~n~i~~~--~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~  199 (332)
T 2ft3_A          127 ELRIHDNRIRKV--P-----KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELH  199 (332)
T ss_dssp             EEECCSSCCCCC--C-----SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCB
T ss_pred             EEECCCCccCcc--C-----HhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEE
Confidence            666665444311  0     01112566666666666655421110 00111                    13566666


Q ss_pred             cCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          223 LRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       223 l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      +++|............++ +|+.|++++|.+++.....+.     ..+.++.++++++..
T Consensus       200 l~~n~i~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l  253 (332)
T 2ft3_A          200 LDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLS-----FLPTLRELHLDNNKL  253 (332)
T ss_dssp             CCSSCCCCCCTTSSTTCT-TCSCCBCCSSCCCCCCTTGGG-----GCTTCCEEECCSSCC
T ss_pred             CCCCcCCccCHHHhcCCC-CCCEEECCCCcCCcCChhHhh-----CCCCCCEEECCCCcC
Confidence            665543332222233455 777777777777655443443     345666666665543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.55  E-value=7.4e-08  Score=86.17  Aligned_cols=161  Identities=14%  Similarity=0.022  Sum_probs=105.3

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.|+++. .++..  .  ...+++|++|+++++ .++..  .  +..+++|++|++++|.++...    ...+++|
T Consensus        84 l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N-~l~~l--~--~~~l~~L~~L~l~~N~l~~l~----l~~l~~L  150 (457)
T 3bz5_A           84 NTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTN-KLTKL--D--VSQNPLLTYLNCARNTLTEID----VSHNTQL  150 (457)
T ss_dssp             CTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSS-CCSCC--C--CTTCTTCCEEECTTSCCSCCC----CTTCTTC
T ss_pred             CCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCC-cCCee--c--CCCCCcCCEEECCCCccceec----cccCCcC
Confidence            56788888854 33332  1  345888999998865 44432  1  456788999999888665421    3457889


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.|++.++.....    .    .+. .+++|++|++++|.++.-.    +..+++|+.|++++|..... .  ...++ +
T Consensus       151 ~~L~l~~n~~~~~----~----~~~-~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~-~--l~~l~-~  213 (457)
T 3bz5_A          151 TELDCHLNKKITK----L----DVT-PQTQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKL-D--LNQNI-Q  213 (457)
T ss_dssp             CEEECTTCSCCCC----C----CCT-TCTTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCC-C--CTTCT-T
T ss_pred             CEEECCCCCcccc----c----ccc-cCCcCCEEECCCCccceec----cccCCCCCEEECcCCcCCee-c--cccCC-C
Confidence            9998887532211    0    122 6788999999988776532    44678899999988765442 1  34456 8


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      |+.|++++|.+++..   +.     ..+.++.++++++..
T Consensus       214 L~~L~Ls~N~l~~ip---~~-----~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          214 LTFLDCSSNKLTEID---VT-----PLTQLTYFDCSVNPL  245 (457)
T ss_dssp             CSEEECCSSCCSCCC---CT-----TCTTCSEEECCSSCC
T ss_pred             CCEEECcCCcccccC---cc-----ccCCCCEEEeeCCcC
Confidence            899999998887643   22     345666666665543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.53  E-value=1.2e-08  Score=97.94  Aligned_cols=60  Identities=15%  Similarity=0.032  Sum_probs=30.1

Q ss_pred             CCCCcEEEecCCccChHHHHH--HHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667          190 MHGLRHLQLFGNELTNVGLQA--ILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       190 ~~~L~~L~l~~~~i~~~~l~~--l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      +++|++|++++|.++  .+..  .+..+++|+.|++++|... .+. ....++ +|+.|++++|.++
T Consensus       547 l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          547 GPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE  608 (876)
T ss_dssp             TTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS
T ss_pred             cCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc
Confidence            445666666665544  1222  3335556666666655433 222 223344 6666666666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.51  E-value=1.9e-08  Score=81.37  Aligned_cols=136  Identities=14%  Similarity=0.000  Sum_probs=93.4

Q ss_pred             CCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHH
Q 021667          134 FPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILD  213 (309)
Q Consensus       134 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~  213 (309)
                      .++|+.|+|++|.+..... .....+++|+.|+++++.+...  .     ......+++|++|+|++|.++.-. ...+.
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i--~-----~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~  109 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGAL--P-----VGVFDSLTQLTVLDLGTNQLTVLP-SAVFD  109 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCC-TTTTT
T ss_pred             CCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCc--C-----hhhcccCCCcCEEECCCCcCCccC-hhHhC
Confidence            3899999999997654211 2234589999999998766422  1     112237899999999999776321 12344


Q ss_pred             hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      .+++|++|+++++.... +..-...++ +|+.|++++|.++......+.     ..+.+..+++++..+.-+
T Consensus       110 ~l~~L~~L~Ls~N~l~~-lp~~~~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          110 RLVHLKELFMCCNKLTE-LPRGIERLT-HLTHLALDQNQLKSIPHGAFD-----RLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             TCTTCCEEECCSSCCCS-CCTTGGGCT-TCSEEECCSSCCCCCCTTTTT-----TCTTCCEEECTTSCBCTT
T ss_pred             cchhhCeEeccCCcccc-cCcccccCC-CCCEEECCCCcCCccCHHHHh-----CCCCCCEEEeeCCCccCC
Confidence            68999999999887554 333335667 999999999998765544443     455677777776655433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.51  E-value=3.2e-09  Score=84.01  Aligned_cols=107  Identities=22%  Similarity=0.249  Sum_probs=61.8

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      .+++|+.|+++++ .++.  +. .+..+++|+.|++++|.+..  +......+++|+.|+++++.+..        +..+
T Consensus        46 ~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~--------l~~~  111 (198)
T 1ds9_A           46 TLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--------LSGI  111 (198)
T ss_dssp             HTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC--------HHHH
T ss_pred             cCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc--------CCcc
Confidence            4677777777754 3332  11 23456777777777774432  22223335677777777654431        1233


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCC
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFN  228 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~  228 (309)
                      . .+++|++|++++|.++.-.....+..+++|++|++++|..
T Consensus       112 ~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          112 E-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             H-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             c-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            3 5677777777777766533323344677777777777653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.51  E-value=1.8e-09  Score=88.09  Aligned_cols=179  Identities=9%  Similarity=0.012  Sum_probs=108.6

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecC-CCCCHHHHHHHHhcCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSY-CSLSQEALEAVGSLCPL  161 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~l~~~~~~  161 (309)
                      ...++.+++.. .++.-. ......+++|++|++.++..++... ...+..+++|++|++++ +.+..-.. .....+++
T Consensus        30 ~~~l~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~  106 (239)
T 2xwt_C           30 PPSTQTLKLIETHLRTIP-SHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPL  106 (239)
T ss_dssp             CTTCCEEEEESCCCSEEC-TTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECT-TSEECCTT
T ss_pred             CCcccEEEEeCCcceEEC-HHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCC
Confidence            34677777743 232211 1122358899999998763244211 11245688999999997 66653211 12245789


Q ss_pred             CcEEEeccCCCCCCCcccchhHHHHHhcCCCCc---EEEecCC-ccChHHHHHHHHhCCCCC-eeecCCCCCcCchhHHH
Q 021667          162 LRSFKLNNRGHRCPKIECDDDAKAIAENMHGLR---HLQLFGN-ELTNVGLQAILDACPHLE-SLDLRQCFNVNLVGKLG  236 (309)
Q Consensus       162 L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~-~i~~~~l~~l~~~~~~L~-~L~l~~c~~~~~~~~l~  236 (309)
                      |+.|++.++.+..-  .      .+ ..+++|+   +|++++| .++.-... .+..+++|+ .|+++++....-.....
T Consensus       107 L~~L~l~~n~l~~l--p------~~-~~l~~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~l~~i~~~~~  176 (239)
T 2xwt_C          107 LKFLGIFNTGLKMF--P------DL-TKVYSTDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNGFTSVQGYAF  176 (239)
T ss_dssp             CCEEEEEEECCCSC--C------CC-TTCCBCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCCCCEECTTTT
T ss_pred             CCEEeCCCCCCccc--c------cc-ccccccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCCCcccCHhhc
Confidence            99999987655421  1      12 2667777   9999988 76642211 233678899 99998876543222222


Q ss_pred             HHhHhccCceecCCCC-CCchhhhhhhhhhccCC-cCCCCCCCCcccc
Q 021667          237 KICAERIRDLRHPNDS-THDYEFGADFQDFCWSS-VEDYPSGISDIEL  282 (309)
Q Consensus       237 ~~~~~~L~~L~l~~~~-~~d~~~~~~~~~~c~~~-~~l~~~~~s~~~~  282 (309)
                      .. + +|++|++++|. ++......+.     .. +.++.+++++...
T Consensus       177 ~~-~-~L~~L~L~~n~~l~~i~~~~~~-----~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          177 NG-T-KLDAVYLNKNKYLTVIDKDAFG-----GVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             TT-C-EEEEEECTTCTTCCEECTTTTT-----TCSBCCSEEECTTCCC
T ss_pred             CC-C-CCCEEEcCCCCCcccCCHHHhh-----ccccCCcEEECCCCcc
Confidence            22 5 89999999995 8765555554     44 5677777776544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.49  E-value=1.9e-08  Score=96.46  Aligned_cols=159  Identities=13%  Similarity=0.134  Sum_probs=104.3

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCC-CCH-HHHH---HHH---hcCCCCcEEEeccCCCCCCCcc
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCS-LSQ-EALE---AVG---SLCPLLRSFKLNNRGHRCPKIE  178 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~-~~~~---~l~---~~~~~L~~L~l~~~~~~~~~~~  178 (309)
                      .+++|+.|+|.++.....  ++..+..+++|++|+|++|. ++. ....   .+.   ..+|+|+.|+++++.+.  .++
T Consensus       489 ~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip  564 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFP  564 (876)
T ss_dssp             GCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCC
T ss_pred             cCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccC
Confidence            578899999987632221  22345678999999999996 775 3222   222   34579999999986654  111


Q ss_pred             cchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc-cCceecCCCCCCchh
Q 021667          179 CDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER-IRDLRHPNDSTHDYE  257 (309)
Q Consensus       179 ~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~-L~~L~l~~~~~~d~~  257 (309)
                         ....+. .+++|+.|++++|.++  .+. .+..+++|+.|++++|... .+......++ + |+.|++++|.++...
T Consensus       565 ---~~~~l~-~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~-~~L~~L~Ls~N~L~~lp  635 (876)
T 4ecn_A          565 ---ASASLQ-KMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFT-DQVEGLGFSHNKLKYIP  635 (876)
T ss_dssp             ---CHHHHT-TCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEEC-TTCCEEECCSSCCCSCC
T ss_pred             ---Chhhhh-cCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccc-cchHHHhhcc-ccCCEEECcCCCCCcCc
Confidence               112344 8999999999999877  232 3456889999999998765 3333344556 6 999999999987332


Q ss_pred             hhhhhhhhccCCcCCCCCCCCcccc
Q 021667          258 FGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       258 ~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                       ..+. ..  ..+.+..++++++..
T Consensus       636 -~~~~-~~--~~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          636 -NIFN-AK--SVYVMGSVDFSYNKI  656 (876)
T ss_dssp             -SCCC-TT--CSSCEEEEECCSSCT
T ss_pred             -hhhh-cc--ccCCCCEEECcCCcC
Confidence             1111 11  223477777877755

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.47  E-value=1.1e-08  Score=95.52  Aligned_cols=154  Identities=14%  Similarity=0.044  Sum_probs=78.9

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHh-------cCCCCcEEEeccCCCCCCCcccc
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGS-------LCPLLRSFKLNNRGHRCPKIECD  180 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-------~~~~L~~L~l~~~~~~~~~~~~~  180 (309)
                      +++|+.|+++++ .++. ....+...+++|++|+|++|.++.- -..+..       .+++|+.|+++++.+..  +.  
T Consensus       432 ~~~L~~L~Ls~N-~l~~-lp~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp--  504 (636)
T 4eco_A          432 GINVSSINLSNN-QISK-FPKELFSTGSPLSSINLMGNMLTEI-PKNSLKDENENFKNTYLLTSIDLRFNKLTK--LS--  504 (636)
T ss_dssp             CCCEEEEECCSS-CCCS-CCTHHHHTTCCCSEEECCSSCCSBC-CSSSSEETTEECTTGGGCCEEECCSSCCCB--CC--
T ss_pred             CCCCCEEECcCC-ccCc-CCHHHHccCCCCCEEECCCCCCCCc-CHHHhccccccccccCCccEEECcCCcCCc--cC--
Confidence            457777777755 3431 1123444577777777777755411 000111       12267777777654431  11  


Q ss_pred             hhHHHHH-hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCC------CcCchhHHHHHhHhccCceecCCCCC
Q 021667          181 DDAKAIA-ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCF------NVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       181 ~~~~~l~-~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~------~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                         ..+. ..+++|++|++++|.++.  +..-+..+++|+.|++++|.      ...........++ +|++|++++|.+
T Consensus       505 ---~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l  578 (636)
T 4eco_A          505 ---DDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP-SLTQLQIGSNDI  578 (636)
T ss_dssp             ---GGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS-SCCEEECCSSCC
T ss_pred             ---hhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC-CCCEEECCCCcC
Confidence               1111 256777777777776654  22223356777777774432      2222222333455 677777777766


Q ss_pred             CchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          254 HDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       254 ~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      +.....     .   .+.++.+|++++..
T Consensus       579 ~~ip~~-----~---~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          579 RKVNEK-----I---TPNISVLDIKDNPN  599 (636)
T ss_dssp             CBCCSC-----C---CTTCCEEECCSCTT
T ss_pred             CccCHh-----H---hCcCCEEECcCCCC
Confidence            332111     1   13556666666544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.47  E-value=7.7e-09  Score=99.63  Aligned_cols=38  Identities=18%  Similarity=0.166  Sum_probs=16.1

Q ss_pred             cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccC
Q 021667          133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNR  170 (309)
Q Consensus       133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~  170 (309)
                      .+++|++|+|++|.+...........+++|+.|+++++
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            34555555555553332111111233455555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.46  E-value=3.3e-09  Score=90.90  Aligned_cols=163  Identities=14%  Similarity=0.069  Sum_probs=81.8

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHH-HHHhcC--
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALE-AVGSLC--  159 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~--  159 (309)
                      .+.++.|+++. .++.  +.  ....++|++|++.++ .++.. ....+..+++|++|++++|.+...+.. .....+  
T Consensus       101 l~~L~~L~L~~n~l~~--l~--~~~~~~L~~L~l~~n-~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L  174 (332)
T 2ft3_A          101 LRKLQKLYISKNHLVE--IP--PNLPSSLVELRIHDN-RIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKL  174 (332)
T ss_dssp             CTTCCEEECCSSCCCS--CC--SSCCTTCCEEECCSS-CCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCC
T ss_pred             cCCCCEEECCCCcCCc--cC--ccccccCCEEECCCC-ccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCCcc
Confidence            46778888753 2221  00  011267888888754 33311 111244577788888877755431111 001111  


Q ss_pred             ------------------CCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCee
Q 021667          160 ------------------PLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESL  221 (309)
Q Consensus       160 ------------------~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L  221 (309)
                                        ++|+.|+++++.+...      ....+. .+++|++|++++|.++..... .+..+++|++|
T Consensus       175 ~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~------~~~~l~-~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L  246 (332)
T 2ft3_A          175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI------ELEDLL-RYSKLYRLGLGHNQIRMIENG-SLSFLPTLREL  246 (332)
T ss_dssp             SCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC------CTTSST-TCTTCSCCBCCSSCCCCCCTT-GGGGCTTCCEE
T ss_pred             CEEECcCCCCCccCccccCCCCEEECCCCcCCcc------CHHHhc-CCCCCCEEECCCCcCCcCChh-HhhCCCCCCEE
Confidence                              3444444444332211      001122 566777777777755532211 12356777777


Q ss_pred             ecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667          222 DLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADF  262 (309)
Q Consensus       222 ~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~  262 (309)
                      ++++|... ........++ +|+.|++++|.+++.+...+.
T Consensus       247 ~L~~N~l~-~lp~~l~~l~-~L~~L~l~~N~l~~~~~~~~~  285 (332)
T 2ft3_A          247 HLDNNKLS-RVPAGLPDLK-LLQVVYLHTNNITKVGVNDFC  285 (332)
T ss_dssp             ECCSSCCC-BCCTTGGGCT-TCCEEECCSSCCCBCCTTSSS
T ss_pred             ECCCCcCe-ecChhhhcCc-cCCEEECCCCCCCccChhHcc
Confidence            77766543 2222234455 777777777777666555554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.42  E-value=2.5e-08  Score=86.45  Aligned_cols=144  Identities=17%  Similarity=0.089  Sum_probs=96.3

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      .+.++.|+|+++ .++......+...+++|++|+|++|.+...... ....+++|+.|+++++.+...       .....
T Consensus        38 ~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~-~~~~l~~L~~L~Ls~N~l~~~-------~~~~~  108 (361)
T 2xot_A           38 PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSE-AFVPVPNLRYLDLSSNHLHTL-------DEFLF  108 (361)
T ss_dssp             CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEE-------CTTTT
T ss_pred             CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChh-hccCCCCCCEEECCCCcCCcC-------CHHHh
Confidence            356899999965 555322221222689999999999977542211 234589999999998665421       11112


Q ss_pred             hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHH---HHhHhccCceecCCCCCCchhhhhhh
Q 021667          188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLG---KICAERIRDLRHPNDSTHDYEFGADF  262 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~---~~~~~~L~~L~l~~~~~~d~~~~~~~  262 (309)
                      ..+++|+.|+|++|.++..... .+..+++|+.|+|++|....-...+.   ..++ +|+.|+|++|.++......+.
T Consensus       109 ~~l~~L~~L~L~~N~i~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~  184 (361)
T 2xot_A          109 SDLQALEVLLLYNNHIVVVDRN-AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP-KLMLLDLSSNKLKKLPLTDLQ  184 (361)
T ss_dssp             TTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCGGGTC----CT-TCCEEECCSSCCCCCCHHHHH
T ss_pred             CCCcCCCEEECCCCcccEECHH-HhCCcccCCEEECCCCcCCeeCHHHhcCcccCC-cCCEEECCCCCCCccCHHHhh
Confidence            3789999999999987743222 23468999999999987655333332   4567 999999999999876655543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.36  E-value=4.9e-08  Score=90.70  Aligned_cols=138  Identities=14%  Similarity=0.140  Sum_probs=94.3

Q ss_pred             CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667          109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE  188 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  188 (309)
                      +++++|+|++. .++.-. ...+..+++|++|+|++|.+..-.- .....+++|++|+++++.+..-    .   .....
T Consensus        52 ~~~~~LdLs~N-~i~~l~-~~~f~~l~~L~~L~Ls~N~i~~i~~-~~f~~L~~L~~L~Ls~N~l~~l----~---~~~f~  121 (635)
T 4g8a_A           52 FSTKNLDLSFN-PLRHLG-SYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSL----A---LGAFS  121 (635)
T ss_dssp             TTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEE----C---GGGGT
T ss_pred             cCCCEEEeeCC-CCCCCC-HHHHhCCCCCCEEECCCCcCCCcCh-hHhcCCCCCCEEEccCCcCCCC----C---HHHhc
Confidence            47999999965 555311 1234578999999999997653211 1235589999999998655421    1   11223


Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc-hhHHHHHhHhccCceecCCCCCCchhh
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL-VGKLGKICAERIRDLRHPNDSTHDYEF  258 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~-~~~l~~~~~~~L~~L~l~~~~~~d~~~  258 (309)
                      .+++|++|++++|.++.-.-. .+..+++|++|++++|..... .......++ +|++|++++|.++....
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTC-CCTTCTTCCEEECCSSCCCCCCCCGGGGGCT-TCCEEECCSSCCCEECG
T ss_pred             CCCCCCEEECCCCcCCCCChh-hhhcCcccCeeccccCccccCCCchhhccch-hhhhhcccCcccccccc
Confidence            889999999999977642111 134689999999999875432 334555677 99999999999865433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.34  E-value=4.1e-08  Score=91.20  Aligned_cols=159  Identities=16%  Similarity=0.088  Sum_probs=98.4

Q ss_pred             CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667           85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR  163 (309)
Q Consensus        85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  163 (309)
                      ..++.|++++ .++.- -......+++|++|+|+++ .++.-. ...+..+++|++|+|++|.+..-.. ....++++|+
T Consensus        52 ~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~L~  127 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSLQ  127 (635)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCCCCEECG-GGGTTCTTCC
T ss_pred             cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCCCCC
Confidence            4788888864 33321 1122345899999999976 444211 1234578999999999997653211 2235689999


Q ss_pred             EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhH---
Q 021667          164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICA---  240 (309)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~---  240 (309)
                      +|++.++.+...  .  .  ..+ ..+++|++|++++|.++...+...+..+++|++|+++++..............   
T Consensus       128 ~L~Ls~N~l~~l--~--~--~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~  200 (635)
T 4g8a_A          128 KLVAVETNLASL--E--N--FPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP  200 (635)
T ss_dssp             EEECTTSCCCCS--T--T--CCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred             EEECCCCcCCCC--C--h--hhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence            999998665422  1  0  112 27899999999999776544444555789999999998865443222222222   


Q ss_pred             hccCceecCCCCCC
Q 021667          241 ERIRDLRHPNDSTH  254 (309)
Q Consensus       241 ~~L~~L~l~~~~~~  254 (309)
                      .....++++.+.++
T Consensus       201 ~~~~~~~ls~n~l~  214 (635)
T 4g8a_A          201 LLNLSLDLSLNPMN  214 (635)
T ss_dssp             TCCCEEECTTCCCC
T ss_pred             hhhhhhhcccCccc
Confidence            12335666666553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.34  E-value=6.4e-09  Score=84.75  Aligned_cols=153  Identities=12%  Similarity=0.070  Sum_probs=102.3

Q ss_pred             CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCC-CCHHHHHHHHhcCCCCcEEEecc-CCCCCCCcccchhHHHH
Q 021667          109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCS-LSQEALEAVGSLCPLLRSFKLNN-RGHRCPKIECDDDAKAI  186 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l  186 (309)
                      ++|+.|++.++ .++...- ..+..+++|++|++++|. ++.-.. .....+++|++|++++ +.+...  .    ...+
T Consensus        31 ~~l~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i--~----~~~f  101 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIPS-HAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYI--D----PDAL  101 (239)
T ss_dssp             TTCCEEEEESC-CCSEECT-TTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEE--C----TTSE
T ss_pred             CcccEEEEeCC-cceEECH-HHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEc--C----HHHh
Confidence            48999999965 4442211 134568999999999995 653211 1235689999999986 554311  0    1112


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCC---eeecCCCCCcCchh-HHHHHhHhccC-ceecCCCCCCchhhhhh
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLE---SLDLRQCFNVNLVG-KLGKICAERIR-DLRHPNDSTHDYEFGAD  261 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~---~L~l~~c~~~~~~~-~l~~~~~~~L~-~L~l~~~~~~d~~~~~~  261 (309)
                       ..+++|++|++++|.++.  +.. +..+++|+   +|+++++..++... .....++ +|+ .|++++|.++......+
T Consensus       102 -~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~-~L~~~L~l~~n~l~~i~~~~~  176 (239)
T 2xwt_C          102 -KELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLYNNGFTSVQGYAF  176 (239)
T ss_dssp             -ECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB-SSEEEEECCSCCCCEECTTTT
T ss_pred             -CCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchh-cceeEEEcCCCCCcccCHhhc
Confidence             278999999999997764  222 44678888   99999984555432 3345677 999 99999999875554444


Q ss_pred             hhhhccCCcCCCCCCCCccc
Q 021667          262 FQDFCWSSVEDYPSGISDIE  281 (309)
Q Consensus       262 ~~~~c~~~~~l~~~~~s~~~  281 (309)
                      .     . ..+..++++++.
T Consensus       177 ~-----~-~~L~~L~L~~n~  190 (239)
T 2xwt_C          177 N-----G-TKLDAVYLNKNK  190 (239)
T ss_dssp             T-----T-CEEEEEECTTCT
T ss_pred             C-----C-CCCCEEEcCCCC
Confidence            3     2 466677777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.31  E-value=3.5e-08  Score=77.53  Aligned_cols=63  Identities=13%  Similarity=0.115  Sum_probs=25.2

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      .+++|++|+|++|.++..... .+..+++|++|+++++...+.........+ +|+.|++++|++
T Consensus        76 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l  138 (192)
T 1w8a_A           76 GASHIQELQLGENKIKEISNK-MFLGLHQLKTLNLYDNQISCVMPGSFEHLN-SLTSLNLASNPF  138 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSS-SSTTCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECTTCCB
T ss_pred             CcccCCEEECCCCcCCccCHH-HhcCCCCCCEEECCCCcCCeeCHHHhhcCC-CCCEEEeCCCCc
Confidence            344455555555443321111 112344455555554433222122222334 455555555553

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.30  E-value=6.7e-08  Score=86.21  Aligned_cols=51  Identities=18%  Similarity=0.432  Sum_probs=45.8

Q ss_pred             CCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccC-CCCCceeecCC
Q 021667           10 SCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHD-PAMWRNIDMHN   61 (309)
Q Consensus        10 ~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~-~~l~~~i~l~~   61 (309)
                      .+.+..||+|++.+||+||+.++++ ++++|||+|++++.+ +.+|+++-+..
T Consensus        12 ~d~~~~lp~~~~~~i~~~l~~~~l~-~~~~v~~~w~~~~~~~~~~w~~~~~~~   63 (464)
T 3v7d_B           12 RDLITSLPFEISLKIFNYLQFEDII-NSLGVSQNWNKIIRKSTSLWKKLLISE   63 (464)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHH-HHHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             cCChHHCCHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence            4678899999999999999999996 999999999999997 89999876543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.28  E-value=9.9e-08  Score=73.84  Aligned_cols=110  Identities=15%  Similarity=0.138  Sum_probs=59.9

Q ss_pred             CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667          135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA  214 (309)
Q Consensus       135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~  214 (309)
                      ++|++|+++++.+.... ......+++|+.|+++++.+...  .     ......+++|++|++++|.++... ...+..
T Consensus        28 ~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~-----~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~   98 (177)
T 2o6r_A           28 SSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQIQSL--P-----DGVFDKLTKLTILYLHENKLQSLP-NGVFDK   98 (177)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCC--C-----TTTTTTCTTCCEEECCSSCCCCCC-TTTTTT
T ss_pred             CCCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcceEe--C-----hhHccCCCccCEEECCCCCccccC-HHHhhC
Confidence            56677777766543211 11123456777777766544321  1     011125677777777777655221 112335


Q ss_pred             CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667          215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      +++|++|+++++....-.......++ +|++|++++|+++
T Consensus        99 l~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~~~  137 (177)
T 2o6r_A           99 LTQLKELALDTNQLKSVPDGIFDRLT-SLQKIWLHTNPWD  137 (177)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCT-TCCEEECCSSCBC
T ss_pred             CcccCEEECcCCcceEeCHHHhcCCc-ccCEEEecCCCee
Confidence            67777777777654433333334456 7777888877754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.27  E-value=2.4e-07  Score=72.79  Aligned_cols=115  Identities=17%  Similarity=0.029  Sum_probs=61.1

Q ss_pred             CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667          135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA  214 (309)
Q Consensus       135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~  214 (309)
                      ++|++|+|+++.++.-  ......+++|+.|+++++.+...  .    ...+. .+++|++|+|++|.++.-... .+..
T Consensus        31 ~~l~~L~L~~n~i~~i--p~~~~~l~~L~~L~Ls~N~i~~i--~----~~~f~-~l~~L~~L~Ls~N~l~~i~~~-~f~~  100 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLV--PKELSNYKHLTLIDLSNNRISTL--S----NQSFS-NMTQLLTLILSYNRLRCIPPR-TFDG  100 (193)
T ss_dssp             TTCCEEECCSSCCCSC--CGGGGGCTTCCEEECCSSCCCCC--C----TTTTT-TCTTCCEEECCSSCCCBCCTT-TTTT
T ss_pred             CCCCEEECCCCcCchh--HHHhhcccCCCEEECCCCcCCEe--C----HhHcc-CCCCCCEEECCCCccCEeCHH-HhCC
Confidence            4666666666644421  11234466677777665544321  0    01122 566777777777755532211 1235


Q ss_pred             CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC-Cchhhhh
Q 021667          215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST-HDYEFGA  260 (309)
Q Consensus       215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~-~d~~~~~  260 (309)
                      +++|+.|+|+++....-.......++ +|+.|++++|++ -|..+..
T Consensus       101 l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~~C~c~l~~  146 (193)
T 2wfh_A          101 LKSLRLLSLHGNDISVVPEGAFNDLS-ALSHLAIGANPLYCDCNMQW  146 (193)
T ss_dssp             CTTCCEEECCSSCCCBCCTTTTTTCT-TCCEEECCSSCEECSGGGHH
T ss_pred             CCCCCEEECCCCCCCeeChhhhhcCc-cccEEEeCCCCeecCCcCHH
Confidence            66777777777654433323334456 777777777774 3444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.25  E-value=4.4e-07  Score=83.28  Aligned_cols=107  Identities=21%  Similarity=0.146  Sum_probs=75.9

Q ss_pred             CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh
Q 021667          135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA  214 (309)
Q Consensus       135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~  214 (309)
                      ..|+.|+|++|.++.  +.. ...+++|+.|+++++.+..  ++     ..+. .+++|+.|+|++|.++.  +. -+..
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~~--lp-----~~~~-~l~~L~~L~Ls~N~l~~--lp-~l~~  506 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLRA--LP-----PALA-ALRCLEVLQASDNALEN--VD-GVAN  506 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCCC--CC-----GGGG-GCTTCCEEECCSSCCCC--CG-GGTT
T ss_pred             cCceEEEecCCCCCC--CcC-ccccccCcEeecCcccccc--cc-----hhhh-cCCCCCEEECCCCCCCC--Cc-ccCC
Confidence            468999999996654  223 4557899999998876651  11     1233 78999999999997775  22 3456


Q ss_pred             CCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCCCCCch
Q 021667          215 CPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       215 ~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      +++|+.|+|++|...+.. ......++ +|+.|+|++|+++..
T Consensus       507 l~~L~~L~Ls~N~l~~~~~p~~l~~l~-~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          507 LPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQE  548 (567)
T ss_dssp             CSSCCEEECCSSCCCSSSTTGGGGGCT-TCCEEECTTSGGGGS
T ss_pred             CCCCcEEECCCCCCCCCCCcHHHhcCC-CCCEEEecCCcCCCC
Confidence            889999999987655432 34445677 899999999987543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.22  E-value=3.9e-07  Score=80.87  Aligned_cols=49  Identities=24%  Similarity=0.459  Sum_probs=44.7

Q ss_pred             CCCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceee
Q 021667            9 ESCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNID   58 (309)
Q Consensus         9 ~~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~   58 (309)
                      ..+.++.||+|++.+||+||+.+++. ++++|||+|+.++.++.+|+.+-
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~-~~~~v~~~~~~~~~~~~~w~~~~   63 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLL-QAAQTCRYWRILAEDNLLWREKC   63 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHH-HHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHH-HHHHHhHHHHhhcCchhHhhhhe
Confidence            45789999999999999999999995 99999999999999888898654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.20  E-value=1.3e-07  Score=83.88  Aligned_cols=48  Identities=31%  Similarity=0.623  Sum_probs=43.9

Q ss_pred             CCCCCCCCcHH----HHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCcee
Q 021667            9 ESCDWTQLPAD----VTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNI   57 (309)
Q Consensus         9 ~~~~~~~LP~e----iL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i   57 (309)
                      ..+.++.||+|    ++.+||+||+.+++. ++++|||+|+.++.++.+|+.+
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~-~~~~v~~~w~~~~~~~~~w~~~   58 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLC-AAELVCKEWYRVTSDGMLWKKL   58 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHH-HHHHHCHHHHHHHHHTTHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHhcChHHHHHH
Confidence            35778899999    999999999999996 9999999999999988999865

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.11  E-value=4.7e-06  Score=77.17  Aligned_cols=40  Identities=8%  Similarity=-0.102  Sum_probs=17.1

Q ss_pred             CCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667          215 CPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       215 ~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      +++|+.|++++|.... +......++ +|+.|+|++|+++..
T Consensus       260 ~~~L~~L~Ls~N~L~~-lp~~l~~l~-~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          260 PSGLLSLSVYRNQLTR-LPESLIHLS-SETTVNLEGNPLSER  299 (622)
T ss_dssp             CTTCCEEECCSSCCCS-CCGGGGGSC-TTCEEECCSCCCCHH
T ss_pred             cccCcEEeCCCCCCCc-CCHHHhhcc-ccCEEEecCCCCCCc
Confidence            3445555554443322 111123344 555555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.06  E-value=1e-06  Score=68.04  Aligned_cols=132  Identities=11%  Similarity=0.047  Sum_probs=87.8

Q ss_pred             CcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhC
Q 021667          136 LLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDAC  215 (309)
Q Consensus       136 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~  215 (309)
                      ..+.++++++.+..-.    ....++|+.|++.++.+...  .     ......+++|++|++++|.++.-. ...+..+
T Consensus         8 ~~~~l~~~~~~l~~~p----~~~~~~l~~L~l~~n~l~~~--~-----~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l   75 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVP----TGIPSSATRLELESNKLQSL--P-----HGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKL   75 (177)
T ss_dssp             ETTEEECCSSCCSSCC----TTCCTTCSEEECCSSCCCCC--C-----TTTTTTCTTCSEEECCSSCCCCCC-TTTTTTC
T ss_pred             CCCEEEecCCCCccCC----CCCCCCCcEEEeCCCcccEe--C-----HHHhcCcccccEEECCCCcceEeC-hhHccCC
Confidence            3467777777544311    12246899999998665422  1     111237899999999999776321 1223478


Q ss_pred             CCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          216 PHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       216 ~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      ++|++|+++++............++ +|+.|++++|.++......+.     ..+.+..+++++.....+
T Consensus        76 ~~L~~L~l~~N~l~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           76 TKLTILYLHENKLQSLPNGVFDKLT-QLKELALDTNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCC
T ss_pred             CccCEEECCCCCccccCHHHhhCCc-ccCEEECcCCcceEeCHHHhc-----CCcccCEEEecCCCeecc
Confidence            8999999999876554444445667 999999999998755444343     456777788887765443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.04  E-value=1.4e-06  Score=79.80  Aligned_cols=54  Identities=22%  Similarity=0.256  Sum_probs=23.7

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCC
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGH  172 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  172 (309)
                      +++|+.|+++++ .++.  +.. +  ..+|++|+|++|.++.  +..   .+++|+.|+++++.+
T Consensus        99 l~~L~~L~Ls~N-~l~~--ip~-l--~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l  152 (571)
T 3cvr_A           99 PASLEYLDACDN-RLST--LPE-L--PASLKHLDVDNNQLTM--LPE---LPALLEYINADNNQL  152 (571)
T ss_dssp             CTTCCEEECCSS-CCSC--CCC-C--CTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCC
T ss_pred             cCCCCEEEccCC-CCCC--cch-h--hcCCCEEECCCCcCCC--CCC---cCccccEEeCCCCcc
Confidence            556666666644 3322  111 1  1155555555554332  111   345555555554433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.03  E-value=1.6e-06  Score=81.93  Aligned_cols=110  Identities=19%  Similarity=0.163  Sum_probs=50.7

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      .+++|+.|+|+++ .+..  +..-+..+++|++|+|++|.++.  +..-...+++|+.|+|+++.+..  +.  .   .+
T Consensus       222 ~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~--lp--~---~~  289 (727)
T 4b8c_D          222 DDQLWHALDLSNL-QIFN--ISANIFKYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTS--LP--A---EL  289 (727)
T ss_dssp             CCCCCCEEECTTS-CCSC--CCGGGGGCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEECTTSCCSS--CC--S---SG
T ss_pred             cCCCCcEEECCCC-CCCC--CChhhcCCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeCcCCcCCc--cC--h---hh
Confidence            3556666666644 2221  11111245666666666664431  11112345566666666544431  11  0   12


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL  231 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~  231 (309)
                      . .+++|++|+|++|.++.  +..-+..+++|+.|+|++|.....
T Consensus       290 ~-~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          290 G-SCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             G-GGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCCCSH
T ss_pred             c-CCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCccCCC
Confidence            2 55666666666665441  111133455666666666554433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.98  E-value=7.3e-06  Score=75.90  Aligned_cols=119  Identities=16%  Similarity=0.058  Sum_probs=79.0

Q ss_pred             cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667          133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL  212 (309)
Q Consensus       133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~  212 (309)
                      .+++|+.|++++|.++.     +....++|+.|.+.++.+..-  .         ..+++|+.|++++|.++.-.     
T Consensus       179 ~~~~L~~L~Ls~N~l~~-----l~~~~~~L~~L~L~~N~l~~l--~---------~~~~~L~~L~Ls~N~L~~lp-----  237 (622)
T 3g06_A          179 LPSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRLTSL--P---------ALPSGLKELIVSGNRLTSLP-----  237 (622)
T ss_dssp             CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCSSC--C---------CCCTTCCEEECCSSCCSCCC-----
T ss_pred             cCCCCcEEECCCCCCCC-----CCCccchhhEEECcCCccccc--C---------CCCCCCCEEEccCCccCcCC-----
Confidence            34777777777775542     112346788887776554421  1         13588999999999877521     


Q ss_pred             HhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667          213 DACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV  283 (309)
Q Consensus       213 ~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~  283 (309)
                      ..+++|+.|++++|.... +..   .++ +|+.|++++|.++... ..+.     ..+.+..++++++...
T Consensus       238 ~~l~~L~~L~Ls~N~L~~-lp~---~~~-~L~~L~Ls~N~L~~lp-~~l~-----~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          238 VLPSELKELMVSGNRLTS-LPM---LPS-GLLSLSVYRNQLTRLP-ESLI-----HLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCCTTCCEEECCSSCCSC-CCC---CCT-TCCEEECCSSCCCSCC-GGGG-----GSCTTCEEECCSCCCC
T ss_pred             CCCCcCcEEECCCCCCCc-CCc---ccc-cCcEEeCCCCCCCcCC-HHHh-----hccccCEEEecCCCCC
Confidence            467889999999986443 332   456 9999999999987432 1232     4567778888877653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.96  E-value=5.7e-07  Score=70.88  Aligned_cols=112  Identities=13%  Similarity=0.088  Sum_probs=80.0

Q ss_pred             HHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHH
Q 021667          130 AIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQ  209 (309)
Q Consensus       130 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~  209 (309)
                      .+..+++|++|++++|.+..  +. ....+++|+.|+++++.+..-    .    .....+++|++|++++|.++.-  .
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l----~----~~~~~~~~L~~L~L~~N~l~~l--~  109 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKI----E----NLDAVADTLEELWISYNQIASL--S  109 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSC----S----SHHHHHHHCSEEEEEEEECCCH--H
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccc----c----chhhcCCcCCEEECcCCcCCcC--C
Confidence            45679999999999995544  22 234578999999998665421    1    1222568899999999988763  3


Q ss_pred             HHHHhCCCCCeeecCCCCCcCchh-HHHHHhHhccCceecCCCCCCch
Q 021667          210 AILDACPHLESLDLRQCFNVNLVG-KLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       210 ~l~~~~~~L~~L~l~~c~~~~~~~-~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      . +..+++|++|++++|....-.. .....++ +|+.|++++|++++.
T Consensus       110 ~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~-~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          110 G-IEKLVNLRVLYMSNNKITNWGEIDKLAALD-KLEDLLLAGNPLYND  155 (198)
T ss_dssp             H-HHHHHHSSEEEESEEECCCHHHHHHHTTTT-TCSEEEECSCHHHHH
T ss_pred             c-cccCCCCCEEECCCCcCCchhHHHHHhcCC-CCCEEEecCCccccc
Confidence            3 4468899999999876544221 2345677 999999999987543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.95  E-value=4.7e-06  Score=76.47  Aligned_cols=156  Identities=17%  Similarity=0.124  Sum_probs=95.3

Q ss_pred             cCCCccEEEeCCCCCC-----------CHHHHHHHHhcCCCcCEEE-ecCCCCC--------HHHHHHHHhcCCCCcEEE
Q 021667          107 RSRNLRNLRLVSCYNI-----------SDQGFCEAIKGFPLLEELE-LSYCSLS--------QEALEAVGSLCPLLRSFK  166 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~-----------~~~~~~~~~~~~~~L~~L~-L~~~~~~--------~~~~~~l~~~~~~L~~L~  166 (309)
                      .+++|+.|++.++..+           ........+..+++|+.|+ ++.+.+.        ...+..+.  ...|+.|+
T Consensus       370 ~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~--~~~L~~L~  447 (567)
T 1dce_A          370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME--YADVRVLH  447 (567)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH--HTTCSEEE
T ss_pred             HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC--ccCceEEE
Confidence            4677777776543200           0112233455667777777 4444221        11122221  23688999


Q ss_pred             eccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCce
Q 021667          167 LNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDL  246 (309)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L  246 (309)
                      ++++.+...    .    .+. .+++|+.|+|++|.++  .+..-+..+++|+.|+|++|...+ +. -...++ +|+.|
T Consensus       448 Ls~n~l~~l----p----~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~-~L~~L  513 (567)
T 1dce_A          448 LAHKDLTVL----C----HLE-QLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALEN-VD-GVANLP-RLQEL  513 (567)
T ss_dssp             CTTSCCSSC----C----CGG-GGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS-SCCEE
T ss_pred             ecCCCCCCC----c----Ccc-ccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC-CCcEE
Confidence            987665421    1    233 7889999999999776  222234578899999998876554 33 344566 89999


Q ss_pred             ecCCCCCCchh-hhhhhhhhccCCcCCCCCCCCccccC
Q 021667          247 RHPNDSTHDYE-FGADFQDFCWSSVEDYPSGISDIELV  283 (309)
Q Consensus       247 ~l~~~~~~d~~-~~~~~~~~c~~~~~l~~~~~s~~~~~  283 (309)
                      +|++|.++... ...+.     ..+.|..+++++..+.
T Consensus       514 ~Ls~N~l~~~~~p~~l~-----~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          514 LLCNNRLQQSAAIQPLV-----SCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             ECCSSCCCSSSTTGGGG-----GCTTCCEEECTTSGGG
T ss_pred             ECCCCCCCCCCCcHHHh-----cCCCCCEEEecCCcCC
Confidence            99999887664 44443     5567788888876553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.90  E-value=1.7e-06  Score=81.73  Aligned_cols=114  Identities=20%  Similarity=0.142  Sum_probs=76.3

Q ss_pred             HHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHH
Q 021667          129 EAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGL  208 (309)
Q Consensus       129 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l  208 (309)
                      ..+..++.|+.|+|++|.+..  +..-...+++|+.|+|+++.+..  +.     ..+. .+++|+.|+|++|.++  .+
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~~--lp-----~~~~-~l~~L~~L~Ls~N~l~--~l  285 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTE--LP-----AEIK-NLSNLRVLDLSHNRLT--SL  285 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCSC--CC-----GGGG-GGTTCCEEECTTSCCS--SC
T ss_pred             hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCcc--cC-----hhhh-CCCCCCEEeCcCCcCC--cc
Confidence            345567899999999985542  11112358899999999876651  11     1233 7899999999999777  22


Q ss_pred             HHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667          209 QAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       209 ~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      ..-+..+++|++|+|++|... .+..-...++ +|+.|+|++|.++..
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC-NLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCT-TCCCEECTTSCCCSH
T ss_pred             ChhhcCCCCCCEEECCCCCCC-ccChhhhcCC-CccEEeCCCCccCCC
Confidence            222456889999999988654 3222245567 899999999998754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.89  E-value=4e-06  Score=65.77  Aligned_cols=129  Identities=15%  Similarity=0.010  Sum_probs=86.1

Q ss_pred             CEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCC
Q 021667          138 EELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPH  217 (309)
Q Consensus       138 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~  217 (309)
                      +.++++++.++.-.    ....++|+.|++.++.+...    .   ..+. .+++|+.|++++|.++.-... .+..+++
T Consensus        13 ~~l~~~~~~l~~ip----~~~~~~l~~L~L~~n~i~~i----p---~~~~-~l~~L~~L~Ls~N~i~~i~~~-~f~~l~~   79 (193)
T 2wfh_A           13 TVVRCSNKGLKVLP----KGIPRDVTELYLDGNQFTLV----P---KELS-NYKHLTLIDLSNNRISTLSNQ-SFSNMTQ   79 (193)
T ss_dssp             TEEECTTSCCSSCC----SCCCTTCCEEECCSSCCCSC----C---GGGG-GCTTCCEEECCSSCCCCCCTT-TTTTCTT
T ss_pred             CEEEcCCCCCCcCC----CCCCCCCCEEECCCCcCchh----H---HHhh-cccCCCEEECCCCcCCEeCHh-HccCCCC
Confidence            56777777544210    01236899999998766421    1   1333 899999999999987743222 2347899


Q ss_pred             CCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          218 LESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       218 L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      |++|+++++.............+ +|+.|+|++|.++......+.     ..+.+..+++++....-|
T Consensus        80 L~~L~Ls~N~l~~i~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           80 LLTLILSYNRLRCIPPRTFDGLK-SLRLLSLHGNDISVVPEGAFN-----DLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTT-----TCTTCCEEECCSSCEECS
T ss_pred             CCEEECCCCccCEeCHHHhCCCC-CCCEEECCCCCCCeeChhhhh-----cCccccEEEeCCCCeecC
Confidence            99999999875554333445667 999999999998765554454     455677777776555433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.83  E-value=3.4e-06  Score=64.68  Aligned_cols=63  Identities=17%  Similarity=0.145  Sum_probs=28.7

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      .+++|++|+|++|.++.-. ...+..+++|++|+|+++....-.......++ +|+.|+|++|++
T Consensus        52 ~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~~  114 (170)
T 3g39_A           52 RLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLK-SLTHIWLLNNPW  114 (170)
T ss_dssp             TCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCB
T ss_pred             CcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeCHHHhcCCC-CCCEEEeCCCCC
Confidence            4455555555555444211 11123455555555555443332222233344 566666666554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.82  E-value=2.2e-06  Score=67.12  Aligned_cols=131  Identities=11%  Similarity=0.060  Sum_probs=83.2

Q ss_pred             CEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCC
Q 021667          138 EELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPH  217 (309)
Q Consensus       138 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~  217 (309)
                      +.++++++.++.-.  .  ...++|+.|.+.++.+...  . .   ......+++|++|++++|.++..... .+..+++
T Consensus        11 ~~l~~s~~~l~~ip--~--~~~~~l~~L~l~~n~i~~~--~-~---~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~   79 (192)
T 1w8a_A           11 TTVDCTGRGLKEIP--R--DIPLHTTELLLNDNELGRI--S-S---DGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASH   79 (192)
T ss_dssp             TEEECTTSCCSSCC--S--CCCTTCSEEECCSCCCCSB--C-C---SCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTT
T ss_pred             CEEEcCCCCcCcCc--c--CCCCCCCEEECCCCcCCcc--C-C---ccccccCCCCCEEECCCCCCCCcCHh-HcCCccc
Confidence            56777776443210  0  1123788888877555321  1 0   01123789999999999977743222 2346899


Q ss_pred             CCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          218 LESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       218 L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      |++|+++++.............+ +|+.|++++|.++......+.     ..+.+..+++++..+.-|
T Consensus        80 L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           80 IQELQLGENKIKEISNKMFLGLH-QLKTLNLYDNQISCVMPGSFE-----HLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             CCEEECCSCCCCEECSSSSTTCT-TCCEEECCSSCCCEECTTSST-----TCTTCCEEECTTCCBCCS
T ss_pred             CCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCeeCHHHhh-----cCCCCCEEEeCCCCccCc
Confidence            99999999876554333344567 999999999998765444443     455677777777665433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=3.8e-06  Score=71.62  Aligned_cols=81  Identities=15%  Similarity=0.125  Sum_probs=53.4

Q ss_pred             CCceEEeccccCChHHHHHHHhcCCCccEEEeCCCCCCC---------HH---------H-HHHHHhc--------CCCc
Q 021667           85 GQLLSINIEYFGTDELLQYIANRSRNLRNLRLVSCYNIS---------DQ---------G-FCEAIKG--------FPLL  137 (309)
Q Consensus        85 ~~l~~l~l~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~---------~~---------~-~~~~~~~--------~~~L  137 (309)
                      ..+++|.+...+....+..+...+++|+.|+|+++ .+.         ..         . -...+..        |++|
T Consensus        25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L  103 (329)
T 3sb4_A           25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTL  103 (329)
T ss_dssp             HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTC
T ss_pred             CceeEEEEeccccHHHHHHHHHhhccCeEEecCcc-eeEEecCccccccccccccccccccCHHHhcccccccccccCCC
Confidence            36788888777777777777666899999999854 222         00         0 0123446        8999


Q ss_pred             CEEEecCC--CCCHHHHHHHHhcCCCCcEEEeccC
Q 021667          138 EELELSYC--SLSQEALEAVGSLCPLLRSFKLNNR  170 (309)
Q Consensus       138 ~~L~L~~~--~~~~~~~~~l~~~~~~L~~L~l~~~  170 (309)
                      ++|.|...  .+.+..    ...|++|+.|.+..+
T Consensus       104 ~~l~L~~~i~~I~~~a----F~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          104 EKVILSEKIKNIEDAA----FKGCDNLKICQIRKK  134 (329)
T ss_dssp             CC-CBCTTCCEECTTT----TTTCTTCCEEEBCCS
T ss_pred             cEEECCccccchhHHH----hhcCcccceEEcCCC
Confidence            99999883  333322    356899999999764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.78  E-value=8.3e-06  Score=74.68  Aligned_cols=150  Identities=12%  Similarity=0.021  Sum_probs=95.9

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .++|+.|++++ .++.  +..+   ..+|+.|+++++ .++.  +..   .+++|+.|+|++|.++.  +.   ..+++|
T Consensus        99 l~~L~~L~Ls~N~l~~--ip~l---~~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~l~~--lp---~~l~~L  162 (571)
T 3cvr_A           99 PASLEYLDACDNRLST--LPEL---PASLKHLDVDNN-QLTM--LPE---LPALLEYINADNNQLTM--LP---ELPTSL  162 (571)
T ss_dssp             CTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSCCSC--CC---CCCTTC
T ss_pred             cCCCCEEEccCCCCCC--cchh---hcCCCEEECCCC-cCCC--CCC---cCccccEEeCCCCccCc--CC---CcCCCc
Confidence            46777777754 3332  1111   239999999976 4443  222   57999999999997653  11   257899


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHH-H-HHHHHhCCCCCeeecCCCCCcCchhHHHHHhH
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVG-L-QAILDACPHLESLDLRQCFNVNLVGKLGKICA  240 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~-l-~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~  240 (309)
                      +.|+++++.+...  .  .    +.   ++|+.|+|++|.++.-. + ..+....+.|+.|++++|....-...+.. ++
T Consensus       163 ~~L~Ls~N~L~~l--p--~----l~---~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~  230 (571)
T 3cvr_A          163 EVLSVRNNQLTFL--P--E----LP---ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS-LD  230 (571)
T ss_dssp             CEEECCSSCCSCC--C--C----CC---TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGG-SC
T ss_pred             CEEECCCCCCCCc--c--h----hh---CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhc-CC
Confidence            9999998766531  1  1    11   89999999999776211 1 01222233449999999875543333433 77


Q ss_pred             hccCceecCCCCCCchhhhhhh
Q 021667          241 ERIRDLRHPNDSTHDYEFGADF  262 (309)
Q Consensus       241 ~~L~~L~l~~~~~~d~~~~~~~  262 (309)
                       +|+.|+|++|+++......+.
T Consensus       231 -~L~~L~L~~N~l~~~~p~~l~  251 (571)
T 3cvr_A          231 -PTCTIILEDNPLSSRIRESLS  251 (571)
T ss_dssp             -TTEEEECCSSSCCHHHHHHHH
T ss_pred             -CCCEEEeeCCcCCCcCHHHHH
Confidence             999999999999876555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.71  E-value=8.3e-06  Score=69.53  Aligned_cols=74  Identities=23%  Similarity=0.255  Sum_probs=39.7

Q ss_pred             HHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCc-hhHHHHHhHhccC-ceecCCCCCCchhhhhh
Q 021667          184 KAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNL-VGKLGKICAERIR-DLRHPNDSTHDYEFGAD  261 (309)
Q Consensus       184 ~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~-~~~l~~~~~~~L~-~L~l~~~~~~d~~~~~~  261 (309)
                      ..+...|++|+.|+|.+|.++.-+-. .+.+|++|+.|++.++  ++. .......|+ +|+ .+.+++ .++..+-.+|
T Consensus       219 ~~l~~~~~~L~~l~L~~n~i~~I~~~-aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~-~L~~~l~l~~-~l~~I~~~aF  293 (329)
T 3sb4_A          219 KLIRDYMPNLVSLDISKTNATTIPDF-TFAQKKYLLKIKLPHN--LKTIGQRVFSNCG-RLAGTLELPA-SVTAIEFGAF  293 (329)
T ss_dssp             HHHHHHCTTCCEEECTTBCCCEECTT-TTTTCTTCCEEECCTT--CCEECTTTTTTCT-TCCEEEEECT-TCCEECTTTT
T ss_pred             HHHHHhcCCCeEEECCCCCcceecHh-hhhCCCCCCEEECCcc--cceehHHHhhCCh-hccEEEEEcc-cceEEchhhh
Confidence            34444567777777776544421111 2235677777777653  333 223344566 676 777766 5555555555


Q ss_pred             h
Q 021667          262 F  262 (309)
Q Consensus       262 ~  262 (309)
                      .
T Consensus       294 ~  294 (329)
T 3sb4_A          294 M  294 (329)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.71  E-value=7.8e-05  Score=61.23  Aligned_cols=87  Identities=25%  Similarity=0.310  Sum_probs=49.6

Q ss_pred             HHhcCCCcCEEEecCCCCCHH-HHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccCh---
Q 021667          130 AIKGFPLLEELELSYCSLSQE-ALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTN---  205 (309)
Q Consensus       130 ~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~---  205 (309)
                      +...+++|++|+|++|.+..- .+..+...+|+|+.|+|+++.+...     ..+..+. .+ +|++|.|.+|.++.   
T Consensus       165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-----~~l~~l~-~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-----RELDKIK-GL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-----GGGGGGT-TS-CCSEEECTTSTTGGGCS
T ss_pred             HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-----hhhhhcc-cC-CcceEEccCCcCccccC
Confidence            335677888888888765431 1223334577777777776554321     1222222 23 77777777776653   


Q ss_pred             ---HHHHHHHHhCCCCCeeec
Q 021667          206 ---VGLQAILDACPHLESLDL  223 (309)
Q Consensus       206 ---~~l~~l~~~~~~L~~L~l  223 (309)
                         .....++..+|+|+.|+=
T Consensus       238 ~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEESS
T ss_pred             cchhHHHHHHHHCcccCeECC
Confidence               223355566777777753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.64  E-value=1.9e-05  Score=70.52  Aligned_cols=59  Identities=17%  Similarity=0.024  Sum_probs=31.9

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD  255 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d  255 (309)
                      .+++|++|++++|.++.  +   -...++|++|++++|... .... ...++ +|+.|++++|.++.
T Consensus       193 ~l~~L~~L~l~~N~l~~--l---~~~~~~L~~L~l~~n~l~-~lp~-~~~l~-~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          193 NLPFLTAIYADNNSLKK--L---PDLPLSLESIVAGNNILE-ELPE-LQNLP-FLTTIYADNNLLKT  251 (454)
T ss_dssp             TCTTCCEEECCSSCCSS--C---CCCCTTCCEEECCSSCCS-SCCC-CTTCT-TCCEEECCSSCCSS
T ss_pred             CCCCCCEEECCCCcCCc--C---CCCcCcccEEECcCCcCC-cccc-cCCCC-CCCEEECCCCcCCc
Confidence            56666666666665542  0   012245666666666433 2222 23455 67777777776653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.59  E-value=1.4e-05  Score=61.44  Aligned_cols=36  Identities=14%  Similarity=0.027  Sum_probs=15.4

Q ss_pred             CCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCC
Q 021667          135 PLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRG  171 (309)
Q Consensus       135 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  171 (309)
                      ++|+.|+|++|.+.... ......+++|+.|+++++.
T Consensus        33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~   68 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNK   68 (174)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCC
Confidence            45555555555433210 0111234455555555433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.59  E-value=5.7e-05  Score=67.34  Aligned_cols=57  Identities=16%  Similarity=0.173  Sum_probs=34.1

Q ss_pred             CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667          191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD  255 (309)
Q Consensus       191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d  255 (309)
                      ++|++|++++|.++.  +.. +..+++|++|++++|.... ...   ..+ +|+.|++++|.++.
T Consensus       215 ~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~-~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          215 LSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKT-LPD---LPP-SLEALNVRDNYLTD  271 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCSS-CCS---CCT-TCCEEECCSSCCSC
T ss_pred             CcccEEECcCCcCCc--ccc-cCCCCCCCEEECCCCcCCc-ccc---ccc-ccCEEECCCCcccc
Confidence            477888888776552  222 3367778888887765433 111   124 67777777776554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.43  E-value=8.4e-05  Score=56.79  Aligned_cols=89  Identities=15%  Similarity=0.058  Sum_probs=61.9

Q ss_pred             CCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccCC
Q 021667          190 MHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWSS  269 (309)
Q Consensus       190 ~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~  269 (309)
                      .++|++|+|++|.++.-.- ..+..+++|++|+++++.............+ +|+.|+|++|.++......+.     ..
T Consensus        29 ~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~-----~l  101 (170)
T 3g39_A           29 PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT-QLTQLSLNDNQLKSIPRGAFD-----NL  101 (170)
T ss_dssp             CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTT-----TC
T ss_pred             CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCccChhhccCCC-CCCEEECCCCccCEeCHHHhc-----CC
Confidence            3789999999997764221 1234688999999999875554444445677 999999999998765544443     45


Q ss_pred             cCCCCCCCCccccCCC
Q 021667          270 VEDYPSGISDIELVSD  285 (309)
Q Consensus       270 ~~l~~~~~s~~~~~~d  285 (309)
                      +.|..+++++-.+.-+
T Consensus       102 ~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A          102 KSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             TTCCEEECCSSCBCTT
T ss_pred             CCCCEEEeCCCCCCCC
Confidence            5677777776655433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.36  E-value=0.00022  Score=58.49  Aligned_cols=124  Identities=19%  Similarity=0.197  Sum_probs=76.5

Q ss_pred             hHHHHHHHHHhccCCCceEEeccccCC-------------------hHHHHHHHhcCCCccEEEeCCCCCCCH-HHHHHH
Q 021667           71 DLEKMCRHAVDRSNGQLLSINIEYFGT-------------------DELLQYIANRSRNLRNLRLVSCYNISD-QGFCEA  130 (309)
Q Consensus        71 ~~~~~~~~~~~~~~~~l~~l~l~~~~~-------------------~~~l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~  130 (309)
                      .+..+-.....+....-+.|+++....                   ...+..+...+++|+.|+|+++ .++. .++..+
T Consensus       113 ~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~  191 (267)
T 3rw6_A          113 QVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNN-RLYRLDDMSSI  191 (267)
T ss_dssp             HHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTS-CCCCCGGGTTH
T ss_pred             HHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCC-CCCCCccchhH
Confidence            344444444455666666666643111                   1223444456899999999976 5543 345556


Q ss_pred             HhcCCCcCEEEecCCCCCHH-HHHHHHhcCCCCcEEEeccCCCCCCCcc-cchhHHHHHhcCCCCcEEEe
Q 021667          131 IKGFPLLEELELSYCSLSQE-ALEAVGSLCPLLRSFKLNNRGHRCPKIE-CDDDAKAIAENMHGLRHLQL  198 (309)
Q Consensus       131 ~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~l~~~~~~L~~L~l  198 (309)
                      +..+++|+.|+|++|.+.+. .+..+ ..+ +|++|.+.++.+... +. .......+...+|+|+.|+=
T Consensus       192 ~~~l~~L~~L~Ls~N~i~~~~~l~~l-~~l-~L~~L~L~~Npl~~~-~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          192 VQKAPNLKILNLSGNELKSERELDKI-KGL-KLEELWLDGNSLCDT-FRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHSTTCCEEECTTSCCCSGGGGGGG-TTS-CCSEEECTTSTTGGG-CSSHHHHHHHHHHHCTTCCEESS
T ss_pred             HhhCCCCCEEECCCCccCCchhhhhc-ccC-CcceEEccCCcCccc-cCcchhHHHHHHHHCcccCeECC
Confidence            67899999999999987653 22222 223 899999998665321 11 11233455669999998863

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.28  E-value=6.6e-05  Score=57.65  Aligned_cols=105  Identities=15%  Similarity=0.123  Sum_probs=71.9

Q ss_pred             cCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCC
Q 021667          137 LEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACP  216 (309)
Q Consensus       137 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~  216 (309)
                      -+.++++++.++.-.    ..-.++|+.|+++++.+...  .    ...+ ..+++|+.|+|++|.++.-. ..++..++
T Consensus        14 ~~~l~~~~n~l~~iP----~~~~~~L~~L~Ls~N~l~~~--~----~~~~-~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~   81 (174)
T 2r9u_A           14 QTLVNCQNIRLASVP----AGIPTDKQRLWLNNNQITKL--E----PGVF-DHLVNLQQLYFNSNKLTAIP-TGVFDKLT   81 (174)
T ss_dssp             SSEEECCSSCCSSCC----SCCCTTCSEEECCSSCCCCC--C----TTTT-TTCTTCCEEECCSSCCCCCC-TTTTTTCT
T ss_pred             CcEEEeCCCCCCccC----CCcCCCCcEEEeCCCCcccc--C----HHHh-cCCcCCCEEECCCCCCCccC-hhHhCCcc
Confidence            367888887553210    01137899999998766432  1    1122 37899999999999777421 12335689


Q ss_pred             CCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC
Q 021667          217 HLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH  254 (309)
Q Consensus       217 ~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~  254 (309)
                      +|+.|+|+++....-.......++ +|+.|+|++|++.
T Consensus        82 ~L~~L~L~~N~l~~l~~~~~~~l~-~L~~L~L~~N~~~  118 (174)
T 2r9u_A           82 QLTQLDLNDNHLKSIPRGAFDNLK-SLTHIYLYNNPWD  118 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCBC
T ss_pred             hhhEEECCCCccceeCHHHhcccc-CCCEEEeCCCCcc
Confidence            999999999876554434455677 9999999999974

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.15  E-value=2.9e-06  Score=73.03  Aligned_cols=63  Identities=14%  Similarity=0.018  Sum_probs=41.2

Q ss_pred             CCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchh-HHHHHhHhccCceecCCCCCCch
Q 021667          191 HGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVG-KLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       191 ~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~-~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      ..|+.|++++|.++.-.-.  +-...+|+.|.+.+++.++.+. .....++ +|+.|++++|.++..
T Consensus       154 ~~l~~L~L~~N~i~~i~~~--~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~-~L~~LdLs~N~l~~l  217 (350)
T 4ay9_X          154 FESVILWLNKNGIQEIHNS--AFNGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDISRTRIHSL  217 (350)
T ss_dssp             SSCEEEECCSSCCCEECTT--SSTTEEEEEEECTTCTTCCCCCTTTTTTEE-CCSEEECTTSCCCCC
T ss_pred             hhhhhhccccccccCCChh--hccccchhHHhhccCCcccCCCHHHhccCc-ccchhhcCCCCcCcc
Confidence            3577888888876631111  1124568888888777666643 3445667 899999999887543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.02  E-value=4.3e-06  Score=71.96  Aligned_cols=181  Identities=9%  Similarity=-0.017  Sum_probs=89.4

Q ss_pred             CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEE-EecCCCCCHHHHHHHHhcCCCC
Q 021667           85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEEL-ELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L-~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .++++|++.+ .++. .-.....++++|++|+|+++...+.. -...+..+++|+++ .+.++.+..-. ......+++|
T Consensus        30 ~~l~~L~Ls~N~i~~-i~~~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCCCSE-ECTTSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTC
T ss_pred             CCCCEEEccCCcCCC-cCHHHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCcccccC-chhhhhcccc
Confidence            4567777743 2221 11112234777888888765322210 01123345666653 44444443210 1122456788


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHh
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAE  241 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~  241 (309)
                      +.|++.++.+...  ...    .. ....++..|.+.++ .++.-....+......++.|+++++.... +..-..... 
T Consensus       107 ~~L~l~~n~l~~~--~~~----~~-~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~-  177 (350)
T 4ay9_X          107 QYLLISNTGIKHL--PDV----HK-IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGT-  177 (350)
T ss_dssp             CEEEEEEECCSSC--CCC----TT-CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTE-
T ss_pred             ccccccccccccC--Cch----hh-cccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhcccc-
Confidence            8888876554322  100    00 13445667777654 44321111111122357788887765433 222222335 


Q ss_pred             ccCceecCCC-CCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          242 RIRDLRHPND-STHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       242 ~L~~L~l~~~-~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      +|++|.+.++ .++.....++.     ..+.|+.+|+++...
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~-----~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFH-----GASGPVILDISRTRI  214 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTT-----TEECCSEEECTTSCC
T ss_pred             chhHHhhccCCcccCCCHHHhc-----cCcccchhhcCCCCc
Confidence            7888888764 46655555554     455677778876643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.70  E-value=0.00027  Score=60.48  Aligned_cols=91  Identities=21%  Similarity=0.101  Sum_probs=55.4

Q ss_pred             HhcCCCcCEEEecC-CCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHH
Q 021667          131 IKGFPLLEELELSY-CSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQ  209 (309)
Q Consensus       131 ~~~~~~L~~L~L~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~  209 (309)
                      +..+++|++|+|++ |.+..... .....+++|+.|+|+++.+...  .    ...+ ..+++|+.|+|++|.++.-. .
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~--~----~~~~-~~l~~L~~L~l~~N~l~~~~-~   97 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFV--A----PDAF-HFTPRLSRLNLSFNALESLS-W   97 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEE--C----TTGG-GSCSCCCEEECCSSCCSCCC-S
T ss_pred             CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCcccee--C----HHHh-cCCcCCCEEeCCCCccceeC-H
Confidence            55678899999986 76643211 1234578899999987655421  1    1122 27888999999888766311 1


Q ss_pred             HHHHhCCCCCeeecCCCCCcCc
Q 021667          210 AILDACPHLESLDLRQCFNVNL  231 (309)
Q Consensus       210 ~l~~~~~~L~~L~l~~c~~~~~  231 (309)
                      .++...+ |+.|+|.++...-+
T Consensus        98 ~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           98 KTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             TTTCSCC-CCEEECCSSCCCCC
T ss_pred             HHcccCC-ceEEEeeCCCccCC
Confidence            1222233 88888887765543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.31  E-value=0.00078  Score=57.55  Aligned_cols=111  Identities=16%  Similarity=0.121  Sum_probs=71.0

Q ss_pred             EEEecCC-CCCHHHHHHHHhcCCCCcEEEecc-CCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCC
Q 021667          139 ELELSYC-SLSQEALEAVGSLCPLLRSFKLNN-RGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACP  216 (309)
Q Consensus       139 ~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~  216 (309)
                      .++++++ .++.  +.. ...+.+|+.|+|++ +.+...    .  ...+ ..+++|+.|+|++|.++.-.- ..+..++
T Consensus        12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~----~--~~~~-~~l~~L~~L~l~~N~l~~~~~-~~~~~l~   80 (347)
T 2ifg_A           12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHL----E--LRDL-RGLGELRNLTIVKSGLRFVAP-DAFHFTP   80 (347)
T ss_dssp             CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEE----C--GGGS-CSCCCCSEEECCSSCCCEECT-TGGGSCS
T ss_pred             EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCc----C--hhHh-ccccCCCEEECCCCccceeCH-HHhcCCc
Confidence            4566665 5543  222 45577899999985 555321    1  1122 378999999999998774221 2345789


Q ss_pred             CCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC-chhhhhhh
Q 021667          217 HLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH-DYEFGADF  262 (309)
Q Consensus       217 ~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~-d~~~~~~~  262 (309)
                      +|++|+|+++....-....... . .|+.|+|.+|+++ |..+..+.
T Consensus        81 ~L~~L~l~~N~l~~~~~~~~~~-~-~L~~l~l~~N~~~c~c~l~~~~  125 (347)
T 2ifg_A           81 RLSRLNLSFNALESLSWKTVQG-L-SLQELVLSGNPLHCSCALRWLQ  125 (347)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCS-C-CCCEEECCSSCCCCCGGGHHHH
T ss_pred             CCCEEeCCCCccceeCHHHccc-C-CceEEEeeCCCccCCCccHHHH
Confidence            9999999998755432222222 2 4999999999974 55544443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.63  E-value=0.00083  Score=58.76  Aligned_cols=70  Identities=16%  Similarity=0.313  Sum_probs=37.7

Q ss_pred             cCCCCcEEEecCCccChHH----HHHHHHhCCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667          189 NMHGLRHLQLFGNELTNVG----LQAILDACPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPNDSTHDYEFGADF  262 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~----l~~l~~~~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~  262 (309)
                      .|++|+.+.+.++.+....    -...+.+|++|+.+.+..  .++.+ ......|. +|+.+.|+.+ ++..+..+|.
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~-~L~~l~lp~~-l~~I~~~aF~  343 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNR-KVTQLTIPAN-VTQINFSAFN  343 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCC-SCCEEEECTT-CCEECTTSSS
T ss_pred             CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCC-CccEEEECcc-ccEEcHHhCC
Confidence            6777777777765322000    011233677777777763  23332 23344566 7777777543 5544555553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.48  E-value=0.0017  Score=56.72  Aligned_cols=66  Identities=14%  Similarity=0.152  Sum_probs=41.6

Q ss_pred             CCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCc-----CchhHHHHHhHhccCceecCCCCCCchhhhhhh
Q 021667          191 HGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNV-----NLVGKLGKICAERIRDLRHPNDSTHDYEFGADF  262 (309)
Q Consensus       191 ~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~-----~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~  262 (309)
                      .+|+.+.+..+  .|....    +.+|++|+.+.+.++...     .-.......|+ +|+.+.++. .++..+..+|.
T Consensus       248 ~~L~~i~lp~~i~~I~~~a----F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~-~L~~l~l~~-~i~~I~~~aF~  320 (401)
T 4fdw_A          248 SGITTVKLPNGVTNIASRA----FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP-KLARFEIPE-SIRILGQGLLG  320 (401)
T ss_dssp             CCCSEEEEETTCCEECTTT----TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT-TCCEECCCT-TCCEECTTTTT
T ss_pred             CCccEEEeCCCccEEChhH----hhCCCCCCEEEeCCccccCCcccEECHHHhhCCc-cCCeEEeCC-ceEEEhhhhhc
Confidence            56777777554  333322    347889999988765432     11234456788 899999984 46666666664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.22  E-value=0.12  Score=44.64  Aligned_cols=56  Identities=11%  Similarity=0.300  Sum_probs=24.3

Q ss_pred             cCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCC
Q 021667          189 NMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPND  251 (309)
Q Consensus       189 ~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~  251 (309)
                      .|.+|+.+.|..+  .|.+..    +.+|.+|+.+.|-..  ++.+ ......|. +|+.+.++++
T Consensus       309 ~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~s--v~~I~~~aF~~C~-~L~~i~~~~~  367 (394)
T 4gt6_A          309 GCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSS--VTKIPESAFSNCT-ALNNIEYSGS  367 (394)
T ss_dssp             TCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTT--CCBCCGGGGTTCT-TCCEEEESSC
T ss_pred             CCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcc--cCEEhHhHhhCCC-CCCEEEECCc
Confidence            4555555555443  233322    224555555555321  2221 12234455 5555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=84.44  E-value=0.12  Score=44.30  Aligned_cols=13  Identities=8%  Similarity=0.105  Sum_probs=6.5

Q ss_pred             cCCCCcEEEecCC
Q 021667          189 NMHGLRHLQLFGN  201 (309)
Q Consensus       189 ~~~~L~~L~l~~~  201 (309)
                      .|++|+.+.+.++
T Consensus       284 ~c~~L~~i~l~~~  296 (379)
T 4h09_A          284 GCSNLTKVVMDNS  296 (379)
T ss_dssp             TCTTCCEEEECCT
T ss_pred             ccccccccccccc
Confidence            4455555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=84.00  E-value=0.39  Score=41.48  Aligned_cols=77  Identities=14%  Similarity=0.232  Sum_probs=46.9

Q ss_pred             cCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCCCCCchhhhhhhhhh
Q 021667          189 NMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPNDSTHDYEFGADFQDF  265 (309)
Q Consensus       189 ~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~  265 (309)
                      .+.+|+.+.+..+  .|.+..    +.+|.+|+.+++...  ++.+ ......|. +|+.+.++.+ ++..+-.+|.   
T Consensus       295 ~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~---  363 (394)
T 4fs7_A          295 GCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLPYL--VEEIGKRSFRGCT-SLSNINFPLS-LRKIGANAFQ---  363 (394)
T ss_dssp             TCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTTTTTTCT-TCCEECCCTT-CCEECTTTBT---
T ss_pred             ccccccccccccccceechhh----hcCCCCCCEEEeCCc--ccEEhHHhccCCC-CCCEEEECcc-ccEehHHHhh---
Confidence            6777888887665  344332    336888888888532  3332 23345677 8888888765 6655666664   


Q ss_pred             ccCCcCCCCCCCC
Q 021667          266 CWSSVEDYPSGIS  278 (309)
Q Consensus       266 c~~~~~l~~~~~s  278 (309)
                        ++..|..+++.
T Consensus       364 --~C~~L~~i~lp  374 (394)
T 4fs7_A          364 --GCINLKKVELP  374 (394)
T ss_dssp             --TCTTCCEEEEE
T ss_pred             --CCCCCCEEEEC
Confidence              44455555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=82.73  E-value=0.56  Score=40.09  Aligned_cols=79  Identities=11%  Similarity=0.180  Sum_probs=49.2

Q ss_pred             cCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhc
Q 021667          189 NMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFC  266 (309)
Q Consensus       189 ~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c  266 (309)
                      .+.+|+.+.+...  .+...    .+.+|.+|+.+.+.++....-.......|. +|+.+.|+.+ ++..+..+|.    
T Consensus       261 ~~~~l~~i~l~~~i~~i~~~----aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~-~L~~i~lp~~-l~~I~~~aF~----  330 (379)
T 4h09_A          261 NCTALKTLNFYAKVKTVPYL----LCSGCSNLTKVVMDNSAIETLEPRVFMDCV-KLSSVTLPTA-LKTIQVYAFK----  330 (379)
T ss_dssp             TCTTCCEEEECCCCSEECTT----TTTTCTTCCEEEECCTTCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTT----
T ss_pred             eeehhccccccccceecccc----ccccccccccccccccccceehhhhhcCCC-CCCEEEcCcc-ccEEHHHHhh----
Confidence            6777888887654  33322    234788999998865432221224456788 8999999753 6666666664    


Q ss_pred             cCCcCCCCCCCC
Q 021667          267 WSSVEDYPSGIS  278 (309)
Q Consensus       267 ~~~~~l~~~~~s  278 (309)
                       ++..|.++.+.
T Consensus       331 -~C~~L~~i~ip  341 (379)
T 4h09_A          331 -NCKALSTISYP  341 (379)
T ss_dssp             -TCTTCCCCCCC
T ss_pred             -CCCCCCEEEEC
Confidence             44456666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=82.63  E-value=0.42  Score=41.27  Aligned_cols=78  Identities=15%  Similarity=0.207  Sum_probs=50.6

Q ss_pred             cCCCCcEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCCCCCchhhhhhhhhh
Q 021667          189 NMHGLRHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPNDSTHDYEFGADFQDF  265 (309)
Q Consensus       189 ~~~~L~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~  265 (309)
                      .|++|+.+.+...  .+.+..    +.+|.+|+.+.|...  ++.+ ......|. +|+++.|+.+ ++..|-.+|.   
T Consensus       286 ~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~--v~~I~~~aF~~C~-~L~~i~ip~s-v~~I~~~aF~---  354 (394)
T 4gt6_A          286 NCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEG--ITQILDDAFAGCE-QLERIAIPSS-VTKIPESAFS---  354 (394)
T ss_dssp             TCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTT--CCEECTTTTTTCT-TCCEEEECTT-CCBCCGGGGT---
T ss_pred             cccccccccCCCcccccCcee----ecCCCCcCEEEeCCc--ccEehHhHhhCCC-CCCEEEECcc-cCEEhHhHhh---
Confidence            6788888888654  444432    347889999988642  3332 23445678 8999999753 6666677775   


Q ss_pred             ccCCcCCCCCCCCc
Q 021667          266 CWSSVEDYPSGISD  279 (309)
Q Consensus       266 c~~~~~l~~~~~s~  279 (309)
                        ++..|..+++.+
T Consensus       355 --~C~~L~~i~~~~  366 (394)
T 4gt6_A          355 --NCTALNNIEYSG  366 (394)
T ss_dssp             --TCTTCCEEEESS
T ss_pred             --CCCCCCEEEECC
Confidence              445566555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	4e-05
d1io0a_	166	c.10.1.1 (A:) Tropomodulin C-terminal domain {Chic	1e-04
d1pgva_	167	c.10.1.1 (A:) Tropomodulin C-terminal domain {nema	1e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	6e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 30/163 (18%), Positives = 56/163 (34%), Gaps = 23/163 (14%)

Query: 71  DLEKMCRHAVDRSNGQLLSINIEYFGTDELLQYIAN-RSRNLRNLRLVSCYNISDQGFCE 129
            +E++      R +G   +++++   +D  L         N R+    +   I +     
Sbjct: 8   QVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEEN---- 63

Query: 130 AIKGFPLLEELELSYCSLS-QEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188
                P L  L LS   L   + + ++    P L+   L+         E   + +    
Sbjct: 64  ----IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-------ELKSERELDKI 112

Query: 189 NMHGLRHLQLFGNELTNV------GLQAILDACPHLESLDLRQ 225
               L  L L GN L++        + AI +  P L  LD  +
Sbjct: 113 KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHE 155

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 33/125 (26%)

Query: 108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKL 167
           S ++++L +  C  +SD  + E +      + + L  C L++   + + S   +  +   
Sbjct: 1   SLDIQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPA--- 56

Query: 168 NNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA----CPHLESLDL 223
                                    L  L L  NEL +VG+  +L         ++ L L
Sbjct: 57  -------------------------LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSL 91

Query: 224 RQCFN 228
           + C  
Sbjct: 92  QNCCL 96

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (89), Expect = 4e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 13 WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMW 54
          W  LP ++   I S +   + L     VC  W R+  D ++W
Sbjct: 1  WDSLPDELLLGIFSCLCLPE-LLKVSGVCKRWYRLASDESLW 41

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 20/139 (14%), Positives = 40/139 (28%), Gaps = 8/139 (5%)

Query: 98  DELLQYIANRSRNLRNLRLVSCYNISDQG---FCEAIKGFPLLEELELSYCSLSQEALEA 154
           +E L+ I N   +L  + L +  NI         EA+K    +++  +     +     A
Sbjct: 6   EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA 65

Query: 155 VGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNE--LTNVGLQAIL 212
           +  +  +  + K  N                  ++   L  L++      L N     I 
Sbjct: 66  LAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 125

Query: 213 DA---CPHLESLDLRQCFN 228
           +       L          
Sbjct: 126 NMLEKNTTLLKFGYHFTQQ 144

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 8/140 (5%), Positives = 38/140 (27%), Gaps = 9/140 (6%)

Query: 98  DELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGS 157
           +  +  +     +L+ + + +   +S +     I+     + +E    + +  +      
Sbjct: 4   ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG 63

Query: 158 LCPLLRSFKLNNRGHRCPKIECDDDAKAIAE---NMHGLRHLQLFGNELTNVG------L 208
           L  L+ +       +        +    +         +   +      + +G      +
Sbjct: 64  LIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 123

Query: 209 QAILDACPHLESLDLRQCFN 228
              ++    L  + +     
Sbjct: 124 MMAIEENESLLRVGISFASM 143

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 6e-04
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 14 TQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHN 61
           +    +   ILS + A   L +A+ VC  W R+  D  +W+ +    
Sbjct: 16 ARGLDHIAENILSYLDAKS-LCAAELVCKEWYRVTSDGMLWKKLIERM 62

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 13 WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMHNLGDLWDMDHDL 72
           + LP ++   +LS +   D L  A + C  W  +  D  +WR       G    +    
Sbjct: 19 ISLLPKELALYVLSFLEPKD-LLQAAQTCRYWRILAEDNLLWREK-CKEEGIDEPLHIKR 76

Query: 73 EKMCRHAVDRSN 84
           K+ +     S 
Sbjct: 77 RKVIKPGFIHSP 88

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 129 EAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE 188
             ++   L+  L+LS+  L         +L  L     L    +    ++          
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRAL----PPALAALRCLEVLQASDNALENVDGVA------- 62

Query: 189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLR 224
           N+  L+ L L  N L        L +CP L  L+L+
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.9
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.83
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.35
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.27
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.15
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.13
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.09
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.07
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.98
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.97
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.88
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.82
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.78
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.53
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.52
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.48
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.47
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.41
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.41
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.3
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.25
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.2
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.07
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.04
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.0
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.92
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.73
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.62
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.32
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.13
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.11
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.87
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.59
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.95
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	93.39

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.2e-22  Score=167.59  Aligned_cols=216  Identities=19%  Similarity=0.163  Sum_probs=170.4

Q ss_pred             CCceeecCCCCCCcccchhHHHHHHHHHh----------------ccCCCceEEeccc-cCChHHHHHHHhcCCCccEEE
Q 021667           53 MWRNIDMHNLGDLWDMDHDLEKMCRHAVD----------------RSNGQLLSINIEY-FGTDELLQYIANRSRNLRNLR  115 (309)
Q Consensus        53 l~~~i~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~  115 (309)
                      +|+++++....   ..+..+..++.....                .....++++++++ .+++..+..+..+|++|++|.
T Consensus         1 LW~~lDLs~~~---l~~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~   77 (284)
T d2astb2           1 LWQTLDLTGKN---LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS   77 (284)
T ss_dssp             TSSEEECTTCB---CCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred             CcCEEECCCCC---CCchHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccc
Confidence            68899988654   344444444443211                1234678888864 678888899999999999999


Q ss_pred             eCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhH-HHHHhcCCCC
Q 021667          116 LVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDA-KAIAENMHGL  193 (309)
Q Consensus       116 l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~l~~~~~~L  193 (309)
                      +.+| .+++..+..+. .+++|++|++++| .+++.++..++.+||+|++|++++|    ..+. +..+ ..+...+++|
T Consensus        78 L~~~-~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c----~~~~-~~~~~~~~~~~~~~L  150 (284)
T d2astb2          78 LEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC----FDFT-EKHVQVAVAHVSETI  150 (284)
T ss_dssp             CTTC-BCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC----TTCC-HHHHHHHHHHSCTTC
T ss_pred             cccc-CCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccc----cccc-cccchhhhccccccc
Confidence            9988 78888887765 5899999999998 8999999999999999999999873    2223 4444 4556567899


Q ss_pred             cEEEecCC--ccChHHHHHHHHhCCCCCeeecCCCCCcCchh-HHHHHhHhccCceecCCCC-CCchhhhhhhhhhccCC
Q 021667          194 RHLQLFGN--ELTNVGLQAILDACPHLESLDLRQCFNVNLVG-KLGKICAERIRDLRHPNDS-THDYEFGADFQDFCWSS  269 (309)
Q Consensus       194 ~~L~l~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~-~l~~~~~~~L~~L~l~~~~-~~d~~~~~~~~~~c~~~  269 (309)
                      +.|++.++  .+++.++..++..||+|++|++++|..+++.. .....++ +|++|++++|. ++|.++..+.     ..
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~-~L~~L~L~~C~~i~~~~l~~L~-----~~  224 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELG-----EI  224 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGG-----GC
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC-cCCEEECCCCCCCChHHHHHHh-----cC
Confidence            99999987  68999999999999999999999999888632 2334678 99999999986 9999998886     56


Q ss_pred             cCCCCCCCCccccCCCC
Q 021667          270 VEDYPSGISDIELVSDE  286 (309)
Q Consensus       270 ~~l~~~~~s~~~~~~d~  286 (309)
                      +.++.+++++|  ++|.
T Consensus       225 ~~L~~L~l~~~--~~d~  239 (284)
T d2astb2         225 PTLKTLQVFGI--VPDG  239 (284)
T ss_dssp             TTCCEEECTTS--SCTT
T ss_pred             CCCCEEeeeCC--CCHH
Confidence            78999999988  5554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.7e-20  Score=153.94  Aligned_cols=231  Identities=19%  Similarity=0.216  Sum_probs=171.8

Q ss_pred             CCcHHHHHHHhccCChhhhhhhhhhhc--HHHHHhccCCCCCceeecCCCCCCcccchhHHHHHHHHHhccCCCceEEec
Q 021667           15 QLPADVTSTILSKIGAIDVLTSAQRVC--SSWLRICHDPAMWRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINI   92 (309)
Q Consensus        15 ~LP~eiL~~If~~L~~~d~~~~~~~Vc--r~W~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l   92 (309)
                      .++++++..+++.-...-   ++++.+  .-+.... .+.-.++++++.+.   .....+..+     ...++++++|++
T Consensus        11 ~l~~~~l~~l~~~~~~~l---rl~~~~~~~~~~~~~-~~~~L~~LdLs~~~---i~~~~l~~l-----~~~c~~L~~L~L   78 (284)
T d2astb2          11 NLHPDVTGRLLSQGVIAF---RCPRSFMDQPLAEHF-SPFRVQHMDLSNSV---IEVSTLHGI-----LSQCSKLQNLSL   78 (284)
T ss_dssp             BCCHHHHHHHHHTTCSEE---ECTTCEECSCCCSCC-CCBCCCEEECTTCE---ECHHHHHHH-----HTTBCCCSEEEC
T ss_pred             CCCchHHHHHHhccceEe---eccccccccchhhhc-cCCCCCEEECCCCc---cCHHHHHHH-----HHhCCCcccccc
Confidence            678899999987532211   232222  1122211 12334667766543   233333332     345789999999


Q ss_pred             cc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHH-HHhcCCCCcEEEecc
Q 021667           93 EY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEA-VGSLCPLLRSFKLNN  169 (309)
Q Consensus        93 ~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~-l~~~~~~L~~L~l~~  169 (309)
                      .. .+++..+..+++ +++|++|++++|..+++.++..++..|++|++|++++| .+++.++.. +...+++|+.|++.+
T Consensus        79 ~~~~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~  157 (284)
T d2astb2          79 EGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  157 (284)
T ss_dssp             TTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             cccCCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcc
Confidence            65 578888888875 89999999999999999999999999999999999998 788887765 445568999999986


Q ss_pred             CCCCCCCcccchhHHHHHhcCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCchh-HHHHHhHhccCcee
Q 021667          170 RGHRCPKIECDDDAKAIAENMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNLVG-KLGKICAERIRDLR  247 (309)
Q Consensus       170 ~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~-~l~~~~~~~L~~L~  247 (309)
                      +...    ..+..+..+..++|+|++|++++| .+++.++..+. .+++|++|++++|..+++.+ .....+| +|+.|+
T Consensus       158 ~~~~----i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L~~~~-~L~~L~  231 (284)
T d2astb2         158 YRKN----LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQ  231 (284)
T ss_dssp             CGGG----SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCT-TCCEEE
T ss_pred             cccc----cccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHHhcCC-CCCEEe
Confidence            3221    346778888889999999999998 79998888776 69999999999999988733 1234678 999999


Q ss_pred             cCCCCCCchhhhhhhhhhc
Q 021667          248 HPNDSTHDYEFGADFQDFC  266 (309)
Q Consensus       248 l~~~~~~d~~~~~~~~~~c  266 (309)
                      +++| ++|.++..+. +.|
T Consensus       232 l~~~-~~d~~l~~l~-~~l  248 (284)
T d2astb2         232 VFGI-VPDGTLQLLK-EAL  248 (284)
T ss_dssp             CTTS-SCTTCHHHHH-HHS
T ss_pred             eeCC-CCHHHHHHHH-HhC
Confidence            9998 8888888876 444

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-15  Score=85.05  Aligned_cols=41  Identities=29%  Similarity=0.773  Sum_probs=38.9

Q ss_pred             CCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCC
Q 021667           13 WTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMW   54 (309)
Q Consensus        13 ~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~   54 (309)
                      |+.||+|++.+||+||+.+|+. ++++|||+|++++.++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~-~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELL-KVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHH-HHHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhCCcccC
Confidence            6789999999999999999996 9999999999999998887

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=7.5e-12  Score=105.96  Aligned_cols=197  Identities=14%  Similarity=0.121  Sum_probs=132.3

Q ss_pred             cCCCceEEeccc-cCChHHHH---HHHhcCCCccEEEeCCCCCCCHHHHHHH------------HhcCCCcCEEEecCCC
Q 021667           83 SNGQLLSINIEY-FGTDELLQ---YIANRSRNLRNLRLVSCYNISDQGFCEA------------IKGFPLLEELELSYCS  146 (309)
Q Consensus        83 ~~~~l~~l~l~~-~~~~~~l~---~l~~~~~~L~~L~l~~~~~~~~~~~~~~------------~~~~~~L~~L~L~~~~  146 (309)
                      .++.++.|++.. .+++..+.   .....+++|++|++.++ .+++.+...+            ....+.|+.+.++++.
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheecccc-cccccccccccccccccccccccccCcccceeeccccc
Confidence            367899999854 44554333   33445889999999876 5665543332            2346889999999988


Q ss_pred             CCHHHHHHHH---hcCCCCcEEEeccCCCCCCCcccchhH----HHHHhcCCCCcEEEecCCccChHHHHHHH---HhCC
Q 021667          147 LSQEALEAVG---SLCPLLRSFKLNNRGHRCPKIECDDDA----KAIAENMHGLRHLQLFGNELTNVGLQAIL---DACP  216 (309)
Q Consensus       147 ~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~l~~~~~~L~~L~l~~~~i~~~~l~~l~---~~~~  216 (309)
                      +++.++..++   ..++.|+.|++..+.+.      +.+.    ......+++|++|++++|.+++.+...+.   ..++
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~------~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~  243 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIR------PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  243 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCC------HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             ccccccccccchhhhhhhhccccccccccc------ccccccchhhhhcchhhhcccccccccccccccccccccccccc
Confidence            8776655443   55788999999865443      2222    22234788999999999999888766554   5688


Q ss_pred             CCCeeecCCCCCcCc-hhHHHHHhH----hccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCCC
Q 021667          217 HLESLDLRQCFNVNL-VGKLGKICA----ERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSDE  286 (309)
Q Consensus       217 ~L~~L~l~~c~~~~~-~~~l~~~~~----~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d~  286 (309)
                      +|++|++++|...+. ...+.....    ..|++|++++|.+++.|+..+........+.+..+++++..+..++
T Consensus       244 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~  318 (344)
T d2ca6a1         244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  318 (344)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             cchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcc
Confidence            899999999874332 223333221    2689999999999998888776422113456777888877665543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.27  E-value=4.6e-10  Score=94.68  Aligned_cols=188  Identities=15%  Similarity=0.163  Sum_probs=130.5

Q ss_pred             CceeecCCCCCCcccchhHHHHHHHHHhccCCCceEEeccc-cCChHHHHHH------------HhcCCCccEEEeCCCC
Q 021667           54 WRNIDMHNLGDLWDMDHDLEKMCRHAVDRSNGQLLSINIEY-FGTDELLQYI------------ANRSRNLRNLRLVSCY  120 (309)
Q Consensus        54 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~-~~~~~~l~~l------------~~~~~~L~~L~l~~~~  120 (309)
                      .+.+++..+.   .....+..+.....  .++.++++++.+ .+++.....+            ....+.|+.+.+.+. 
T Consensus        95 L~~L~L~~n~---i~~~~~~~l~~~l~--~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-  168 (344)
T d2ca6a1          95 LHTVRLSDNA---FGPTAQEPLIDFLS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-  168 (344)
T ss_dssp             CCEEECCSCC---CCTTTHHHHHHHHH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-
T ss_pred             cccccccccc---cccccccchhhhhc--ccccchheecccccccccccccccccccccccccccccCcccceeecccc-
Confidence            4567777654   33334444444332  367899999964 4444333222            234788999999864 


Q ss_pred             CCCHHHHH---HHHhcCCCcCEEEecCCCCCHHHHHHH----HhcCCCCcEEEeccCCCCCCCcccchhHHHH---HhcC
Q 021667          121 NISDQGFC---EAIKGFPLLEELELSYCSLSQEALEAV----GSLCPLLRSFKLNNRGHRCPKIECDDDAKAI---AENM  190 (309)
Q Consensus       121 ~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l---~~~~  190 (309)
                      .+++.++.   ..+..++.|++|+|+.|.+++.++..+    ...+++|+.|+++++.+.      +.+..++   ...+
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~------~~g~~~L~~~l~~~  242 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT------HLGSSALAIALKSW  242 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH------HHHHHHHHHHGGGC
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccc------cccccccccccccc
Confidence            67765544   445678999999999999998765543    356799999999875443      3333333   3589


Q ss_pred             CCCcEEEecCCccChHHHHHHHHh-----CCCCCeeecCCCCCcCc--hh----HHHHHhHhccCceecCCCCCCc
Q 021667          191 HGLRHLQLFGNELTNVGLQAILDA-----CPHLESLDLRQCFNVNL--VG----KLGKICAERIRDLRHPNDSTHD  255 (309)
Q Consensus       191 ~~L~~L~l~~~~i~~~~l~~l~~~-----~~~L~~L~l~~c~~~~~--~~----~l~~~~~~~L~~L~l~~~~~~d  255 (309)
                      ++|++|+|++|.+++.++..++..     .+.|++|++++|. +++  ..    .+..+++ +|+.|+|++|.+.+
T Consensus       243 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~-~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMP-DLLFLELNGNRFSE  316 (344)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCT-TCCEEECTTSBSCT
T ss_pred             ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCC-CCCEEECCCCcCCC
Confidence            999999999999999998888754     2569999999986 544  11    2334566 89999999999744

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=2.8e-12  Score=88.07  Aligned_cols=51  Identities=18%  Similarity=0.432  Sum_probs=45.6

Q ss_pred             CCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhcc-CCCCCceeecCC
Q 021667           10 SCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICH-DPAMWRNIDMHN   61 (309)
Q Consensus        10 ~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~-~~~l~~~i~l~~   61 (309)
                      .+.++.||+||+.+||+||+.+|++ ++++|||+|+.++. ++.+|+++.+..
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~-~~s~Vcr~W~~~~~~d~~LWr~l~~~~   54 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDII-NSLGVSQNWNKIIRKSTSLWKKLLISE   54 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHH-HHTTTCHHHHHHHHTCSHHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            3678899999999999999999996 99999999999885 789999987654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.8e-10  Score=97.18  Aligned_cols=169  Identities=18%  Similarity=0.195  Sum_probs=118.2

Q ss_pred             CCceEEec-cccCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHH---HhcCCCcCEEEecCCCCCHHHHHHHHhcC-
Q 021667           85 GQLLSINI-EYFGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEA---IKGFPLLEELELSYCSLSQEALEAVGSLC-  159 (309)
Q Consensus        85 ~~l~~l~l-~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~~~~l~~~~-  159 (309)
                      ..|+.|++ +..+++..+..+...+++++.|+|.+| .+++.++..+   ++.+++|++|+|++|.+++.++..++..+ 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            36888999 458999998888888999999999988 6888776654   46789999999999999998888887654 


Q ss_pred             ---CCCcEEEeccCCCCCCCcccchhHHHH---HhcCCCCcEEEecCCccChHHHHHHHHhCCC----CCeeecCCCCCc
Q 021667          160 ---PLLRSFKLNNRGHRCPKIECDDDAKAI---AENMHGLRHLQLFGNELTNVGLQAILDACPH----LESLDLRQCFNV  229 (309)
Q Consensus       160 ---~~L~~L~l~~~~~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~----L~~L~l~~c~~~  229 (309)
                         ++|++|+++++.++      +..+..+   ...+++|++|++++|.+++.++..+......    ...+........
T Consensus        81 ~~~~~L~~L~L~~n~it------~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  154 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLT------GAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  154 (460)
T ss_dssp             STTCCCCEEECTTSCCB------GGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             cCCCCCCEEECCCCCcc------ccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccc
Confidence               57999999976554      3333333   3478999999999999998887776654321    223333322222


Q ss_pred             Cc-h---hHHHHHhHhccCceecCCCCCCchhhhhh
Q 021667          230 NL-V---GKLGKICAERIRDLRHPNDSTHDYEFGAD  261 (309)
Q Consensus       230 ~~-~---~~l~~~~~~~L~~L~l~~~~~~d~~~~~~  261 (309)
                      .. .   .......+ .++.+.++++.+.+.++...
T Consensus       155 ~~~~~~~~~~l~~~~-~~~~~~ls~~~~~~~~~~~~  189 (460)
T d1z7xw1         155 AASCEPLASVLRAKP-DFKELTVSNNDINEAGVRVL  189 (460)
T ss_dssp             GGGHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHH
T ss_pred             hhhhccccccccccc-cccccccccccccccccccc
Confidence            11 1   12222333 56677777776666555444

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.1e-11  Score=85.42  Aligned_cols=48  Identities=25%  Similarity=0.457  Sum_probs=44.6

Q ss_pred             CCCCCCCcHHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceee
Q 021667           10 SCDWTQLPADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNID   58 (309)
Q Consensus        10 ~~~~~~LP~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~   58 (309)
                      .+.++.||+||+.+||+||+..|++ ++++|||+|+.++.++.+|+..-
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~-~~~~vcr~w~~l~~~~~lW~~~~   63 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLL-QAAQTCRYWRILAEDNLLWREKC   63 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHH-HHTTSCHHHHHHHTCSHHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHCCHHHHHHHH
Confidence            5789999999999999999999996 99999999999999999998664

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.6e-09  Score=94.38  Aligned_cols=169  Identities=20%  Similarity=0.195  Sum_probs=117.4

Q ss_pred             HhcCCCccEEEeCCCCCCCHHHHH---HHHhcCCCcCEEEecCCCCCHHHHHHHHh----cCCCCcEEEeccCCCCCCCc
Q 021667          105 ANRSRNLRNLRLVSCYNISDQGFC---EAIKGFPLLEELELSYCSLSQEALEAVGS----LCPLLRSFKLNNRGHRCPKI  177 (309)
Q Consensus       105 ~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~  177 (309)
                      ......++.+++.++ .+......   ......+.++.++++++.+++.++..++.    ..+.|+.+.+..+.+...  
T Consensus       251 ~~~~~~l~~l~l~~n-~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~--  327 (460)
T d1z7xw1         251 LHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA--  327 (460)
T ss_dssp             TSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG--
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhh--
Confidence            334678888888865 55544433   33456789999999999888887776653    345799999987655421  


Q ss_pred             ccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHh----CCCCCeeecCCCCCcCch--hHH---HHHhHhccCceec
Q 021667          178 ECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDA----CPHLESLDLRQCFNVNLV--GKL---GKICAERIRDLRH  248 (309)
Q Consensus       178 ~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~----~~~L~~L~l~~c~~~~~~--~~l---~~~~~~~L~~L~l  248 (309)
                       ....+......+++|++|+|++|.+++.++..+++.    .+.|++|++++|. +++.  .++   ...++ +|++|+|
T Consensus       328 -~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~-~L~~L~L  404 (460)
T d1z7xw1         328 -CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANH-SLRELDL  404 (460)
T ss_dssp             -GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCC-CCCEEEC
T ss_pred             -hhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCC-CChHHHHHHHHHHhcCC-CCCEEEC
Confidence             112223334578899999999999999988887653    4569999999996 5542  233   34567 9999999


Q ss_pred             CCCCCCchhhhhhhhhhcc-CCcCCCCCCCCcc
Q 021667          249 PNDSTHDYEFGADFQDFCW-SSVEDYPSGISDI  280 (309)
Q Consensus       249 ~~~~~~d~~~~~~~~~~c~-~~~~l~~~~~s~~  280 (309)
                      ++|++++.|...+. +..+ ....++.+++++.
T Consensus       405 s~N~i~~~g~~~l~-~~l~~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         405 SNNCLGDAGILQLV-ESVRQPGCLLEQLVLYDI  436 (460)
T ss_dssp             CSSSCCHHHHHHHH-HHHTSTTCCCCEEECTTC
T ss_pred             CCCcCCHHHHHHHH-HHHHhCCCccCEEECCCC
Confidence            99999999998876 2222 2224555666544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.98  E-value=6.9e-09  Score=77.83  Aligned_cols=122  Identities=10%  Similarity=0.133  Sum_probs=72.9

Q ss_pred             HHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHh---cCCCcCEEEecCCCCCHHHHHHHH---hcCCCCcEEEeccCCC
Q 021667           99 ELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIK---GFPLLEELELSYCSLSQEALEAVG---SLCPLLRSFKLNNRGH  172 (309)
Q Consensus        99 ~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~  172 (309)
                      +.+..+....++|++|+|+++..+++.++..++.   ..+.|++|+|++|.+++.+...++   ...+.|++|+++++.+
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence            4566676667788888887655677776665544   346778888887777776655443   3356677777765443


Q ss_pred             CCCCcccchhHHHHH---hcCCCCcEEEecCC---ccChHH---HHHHHHhCCCCCeeecCCC
Q 021667          173 RCPKIECDDDAKAIA---ENMHGLRHLQLFGN---ELTNVG---LQAILDACPHLESLDLRQC  226 (309)
Q Consensus       173 ~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~---~i~~~~---l~~l~~~~~~L~~L~l~~c  226 (309)
                      .      +.++..+.   +..++|++|++.++   .+++++   +...+...+.|+.|+++++
T Consensus        85 ~------~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          85 T------PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             C------HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             c------hHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            3      33333332   24456777777655   344444   3333344666777766554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.97  E-value=2.2e-08  Score=74.98  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=87.6

Q ss_pred             hHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHh---cCCCcCEEEecCCCCCHHHHHHHH---hcCCCCcEEEeccCC
Q 021667           98 DELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIK---GFPLLEELELSYCSLSQEALEAVG---SLCPLLRSFKLNNRG  171 (309)
Q Consensus        98 ~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~  171 (309)
                      ++.+..+....++|++|++.+...+++.++..+..   ..++|++|+|++|.+++.+...++   ...+.++.+.+.++.
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            35667777778999999998767788888776665   568899999999988888777654   345788888887643


Q ss_pred             CCCCCcccchhHHHHH---hcCCCCcEEEec--CCccChHHHHHHH---HhCCCCCeeecCCCC
Q 021667          172 HRCPKIECDDDAKAIA---ENMHGLRHLQLF--GNELTNVGLQAIL---DACPHLESLDLRQCF  227 (309)
Q Consensus       172 ~~~~~~~~~~~~~~l~---~~~~~L~~L~l~--~~~i~~~~l~~l~---~~~~~L~~L~l~~c~  227 (309)
                      +.      +.++..+.   ...++|+.++|.  ++.+++++...++   +.++.|+.|++....
T Consensus        86 ~~------~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          86 IS------GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             CC------HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             cc------chhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            32      44444443   356778876664  4478887755554   467888888886643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.88  E-value=1.4e-08  Score=76.14  Aligned_cols=126  Identities=14%  Similarity=0.069  Sum_probs=90.9

Q ss_pred             HHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHh---cCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEec
Q 021667          124 DQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGS---LCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLF  199 (309)
Q Consensus       124 ~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~  199 (309)
                      ++.+..+....++|++|+|+++ .+++.++..++.   ..+.|++|+++++.+...  . -..+....+..+.|++|+|+
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~--~-~~~la~~L~~n~~L~~L~L~   80 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDS--E-ARGLIELIETSPSLRVLNVE   80 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHH--H-HTTHHHHHHHCSSCCEEECC
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchh--H-HHHHhhhhhhcccccceeee
Confidence            3567788888899999999986 799988877654   457899999998665421  0 11122223378999999999


Q ss_pred             CCccChHHHHHHHHhC---CCCCeeecCCCCC--cCc-----hhHHHHHhHhccCceecCCCCC
Q 021667          200 GNELTNVGLQAILDAC---PHLESLDLRQCFN--VNL-----VGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       200 ~~~i~~~~l~~l~~~~---~~L~~L~l~~c~~--~~~-----~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      +|.++++++..++..+   +.|++|+++++..  +++     +.......+ +|++|.++.+..
T Consensus        81 ~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~-sL~~l~l~~~~~  143 (167)
T d1pgva_          81 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENE-SLLRVGISFASM  143 (167)
T ss_dssp             SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCS-SCCEEECCCCCH
T ss_pred             hhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCC-CccEeeCcCCCc
Confidence            9999999998887664   5699999987643  322     223334456 899999877643

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.4e-10  Score=81.90  Aligned_cols=50  Identities=28%  Similarity=0.539  Sum_probs=44.4

Q ss_pred             CCCCCCCc----HHHHHHHhccCChhhhhhhhhhhcHHHHHhccCCCCCceeecC
Q 021667           10 SCDWTQLP----ADVTSTILSKIGAIDVLTSAQRVCSSWLRICHDPAMWRNIDMH   60 (309)
Q Consensus        10 ~~~~~~LP----~eiL~~If~~L~~~d~~~~~~~Vcr~W~~~~~~~~l~~~i~l~   60 (309)
                      .+.++.||    +||+.+||+||+..|++ ++++|||+|+.++.++.+|+++...
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~-~~s~Vck~W~~l~~d~~lWk~~~~~   61 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLC-AAELVCKEWYRVTSDGMLWKKLIER   61 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHH-HHHHHCHHHHHHHHHTTHHHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHh
Confidence            36777888    59999999999999996 9999999999999999999987543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.78  E-value=6.6e-08  Score=72.26  Aligned_cols=123  Identities=15%  Similarity=0.181  Sum_probs=92.3

Q ss_pred             HHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHh---cCCCCcEEEeccCCCCCCCcccchhHHH---HHhcCCCCcEE
Q 021667          124 DQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGS---LCPLLRSFKLNNRGHRCPKIECDDDAKA---IAENMHGLRHL  196 (309)
Q Consensus       124 ~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~~---l~~~~~~L~~L  196 (309)
                      ++.+..+....|.|++|+|+++ .+++.++..++.   .++.|++|+++++.+.      +..+..   ..+..++|+.+
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~------~~~~~~L~~~l~~~~~l~~l   79 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN------DPVAFALAEMLKVNNTLKSL   79 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC------HHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc------HHHHHHHHHHHhhcccchhh
Confidence            4556777788899999999985 899999887775   5689999999986654      333333   33478999999


Q ss_pred             EecCCccChHHHHHHHHh---CCCCCeeecCCCC-CcCc-----hhHHHHHhHhccCceecCCCCC
Q 021667          197 QLFGNELTNVGLQAILDA---CPHLESLDLRQCF-NVNL-----VGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       197 ~l~~~~i~~~~l~~l~~~---~~~L~~L~l~~c~-~~~~-----~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      .+.++.++++++..++..   ++.|+.++|..+. .+++     +......++ +|++|+++.+..
T Consensus        80 ~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~-~L~~L~l~~~~~  144 (166)
T d1io0a_          80 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNT-TLLKFGYHFTQQ  144 (166)
T ss_dssp             ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCS-SCCEEECCCSSH
T ss_pred             hhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCC-CcCEEeCcCCCC
Confidence            999999999998877755   5779988887553 4444     223334667 999999987664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.4e-09  Score=81.27  Aligned_cols=125  Identities=17%  Similarity=0.116  Sum_probs=62.9

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      +.+++.|+|+++ .++.-  ..+...+++|+.|+|++|.+..-  .. ...+++|++|+++++.+...    .   ..+.
T Consensus        17 ~~~lr~L~L~~n-~I~~i--~~~~~~l~~L~~L~Ls~N~i~~l--~~-~~~l~~L~~L~ls~N~i~~l----~---~~~~   83 (162)
T d1a9na_          17 AVRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNNNRICRI----G---EGLD   83 (162)
T ss_dssp             TTSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCSSCCCEE----C---SCHH
T ss_pred             cCcCcEEECCCC-CCCcc--CccccccccCCEEECCCCCCCcc--CC-cccCcchhhhhcccccccCC----C---cccc
Confidence            455666777654 33321  12334566677777777655431  11 23456666666665444311    1   1122


Q ss_pred             hcCCCCcEEEecCCccChH-HHHHHHHhCCCCCeeecCCCCCcCch---hHHHHHhHhccCcee
Q 021667          188 ENMHGLRHLQLFGNELTNV-GLQAILDACPHLESLDLRQCFNVNLV---GKLGKICAERIRDLR  247 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~~~~~~---~~l~~~~~~~L~~L~  247 (309)
                      ..+++|++|++++|.+++- .+.. +..+|+|++|++++|+.....   ..+...+| +|+.|+
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l~~-l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp-~L~~LD  145 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDLDP-LASLKSLTYLCILRNPVTNKKHYRLYVIYKVP-QVRVLD  145 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGG-GGGCTTCCEEECCSSGGGGSTTHHHHHHHHCT-TCSEET
T ss_pred             ccccccccceeccccccccccccc-cccccccchhhcCCCccccccchHHHHHHHCC-CcCeeC
Confidence            2566666666666655532 2222 235666666666666543221   12344555 666554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.76  E-value=3.1e-09  Score=82.98  Aligned_cols=145  Identities=17%  Similarity=0.109  Sum_probs=94.1

Q ss_pred             hcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHH
Q 021667          106 NRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKA  185 (309)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  185 (309)
                      +.+++|++|+++++ .++..  .. ...+++|+.|++++|.+++  +.. ...+++|+.|.+.++.....        ..
T Consensus        65 ~~l~~L~~L~L~~n-~i~~l--~~-~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~~~~~~~~--------~~  129 (210)
T d1h6ta2          65 QYLPNVTKLFLNGN-KLTDI--KP-LANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNGISDI--------NG  129 (210)
T ss_dssp             GGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSCCCCC--------GG
T ss_pred             hhCCCCCEEeCCCc-cccCc--cc-cccCccccccccccccccc--ccc-cccccccccccccccccccc--------cc
Confidence            45888888888866 45431  11 3467888888888887764  222 34578888888876544311        12


Q ss_pred             HHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhh
Q 021667          186 IAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDF  265 (309)
Q Consensus       186 l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~  265 (309)
                      +. .+++|+.+.+.++.+++..   ....+++|+.++++++... .... ...++ +|++|++++|.+++..  .+.   
T Consensus       130 l~-~l~~l~~l~~~~n~l~~~~---~~~~l~~L~~l~l~~n~l~-~i~~-l~~l~-~L~~L~Ls~N~i~~l~--~l~---  197 (210)
T d1h6ta2         130 LV-HLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQIS-DIVP-LAGLT-KLQNLYLSKNHISDLR--ALA---  197 (210)
T ss_dssp             GG-GCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCC-CCGG-GTTCT-TCCEEECCSSCCCBCG--GGT---
T ss_pred             cc-ccccccccccccccccccc---ccccccccccccccccccc-cccc-ccCCC-CCCEEECCCCCCCCCh--hhc---
Confidence            33 7788888888888776532   2346788888888887643 3333 34566 8888889888887642  333   


Q ss_pred             ccCCcCCCCCCCCc
Q 021667          266 CWSSVEDYPSGISD  279 (309)
Q Consensus       266 c~~~~~l~~~~~s~  279 (309)
                        ..+.|+.+++++
T Consensus       198 --~l~~L~~L~Ls~  209 (210)
T d1h6ta2         198 --GLKNLDVLELFS  209 (210)
T ss_dssp             --TCTTCSEEEEEE
T ss_pred             --CCCCCCEEEccC
Confidence              445666666543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.70  E-value=8.3e-09  Score=81.49  Aligned_cols=62  Identities=11%  Similarity=0.156  Sum_probs=39.2

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      .+++|++|.+.+|.+++..-   +..+++|+.|++++|. +++... ...++ +|++|++++|++++.
T Consensus       149 ~~~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~Ls~n~-l~~l~~-l~~l~-~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         149 GLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNK-ISDISP-LASLP-NLIEVHLKNNQISDV  210 (227)
T ss_dssp             GCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCCGG-GGGCT-TCCEEECTTSCCCBC
T ss_pred             cccccccccccccccccchh---hcccccceecccCCCc-cCCChh-hcCCC-CCCEEECcCCcCCCC
Confidence            56777777777776553211   3457777777777764 344333 34556 777777777777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.68  E-value=1.3e-08  Score=78.58  Aligned_cols=127  Identities=16%  Similarity=0.200  Sum_probs=64.1

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      .+++|++|+++++ .+++.  .. +..+++|++|.+++|.+...  .. ...++.|+.|.+.++.....    +    .+
T Consensus        60 ~l~nL~~L~Ls~N-~l~~~--~~-l~~l~~L~~L~l~~n~~~~~--~~-l~~l~~L~~L~l~~~~~~~~----~----~~  124 (199)
T d2omxa2          60 YLNNLTQINFSNN-QLTDI--TP-LKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQITDI----D----PL  124 (199)
T ss_dssp             GCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCC----G----GG
T ss_pred             cCCCcCcCccccc-cccCc--cc-ccCCcccccccccccccccc--cc-cccccccccccccccccccc----c----cc
Confidence            3666666666654 34321  11 34566666666666643321  11 23456666666654333211    0    11


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCc
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHD  255 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d  255 (309)
                       ..+++|+.|++++|.+..-  .. +..+++|+.|++.+|.. ++... ...++ +|++|++++|++++
T Consensus       125 -~~l~~L~~L~l~~n~l~~~--~~-l~~~~~L~~L~l~~n~l-~~l~~-l~~l~-~L~~L~ls~N~i~~  186 (199)
T d2omxa2         125 -KNLTNLNRLELSSNTISDI--SA-LSGLTSLQQLNFSSNQV-TDLKP-LANLT-TLERLDISSNKVSD  186 (199)
T ss_dssp             -TTCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCC-CCCGG-GTTCT-TCCEEECCSSCCCC
T ss_pred             -chhhhhHHhhhhhhhhccc--cc-ccccccccccccccccc-cCCcc-ccCCC-CCCEEECCCCCCCC
Confidence             2566666666666655421  11 23566666666666542 22322 23445 66666666666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=9.4e-09  Score=76.63  Aligned_cols=111  Identities=17%  Similarity=0.152  Sum_probs=80.3

Q ss_pred             cCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHH
Q 021667          133 GFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAIL  212 (309)
Q Consensus       133 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~  212 (309)
                      .+.+|++|+|++|.++.  +..+...+++|+.|+++++.+..-    +    .+ ..+++|++|++++|.++.-.. .++
T Consensus        16 n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~l----~----~~-~~l~~L~~L~ls~N~i~~l~~-~~~   83 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL----D----GF-PLLRRLKTLLVNNNRICRIGE-GLD   83 (162)
T ss_dssp             CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE----C----CC-CCCSSCCEEECCSSCCCEECS-CHH
T ss_pred             CcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCCcc----C----Cc-ccCcchhhhhcccccccCCCc-ccc
Confidence            45689999999997764  234456789999999998665411    1    12 378999999999998774221 234


Q ss_pred             HhCCCCCeeecCCCCCcCchh-HHHHHhHhccCceecCCCCCCch
Q 021667          213 DACPHLESLDLRQCFNVNLVG-KLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       213 ~~~~~L~~L~l~~c~~~~~~~-~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      ..+++|+.|++++|....-.+ .....++ +|++|++++|++++.
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l~~l~~l~-~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDLDPLASLK-SLTYLCILRNPVTNK  127 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCT-TCCEEECCSSGGGGS
T ss_pred             ccccccccceecccccccccccccccccc-ccchhhcCCCccccc
Confidence            579999999999987543211 2235678 999999999998654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.61  E-value=2.5e-08  Score=76.96  Aligned_cols=147  Identities=19%  Similarity=0.185  Sum_probs=104.5

Q ss_pred             CCCccEEEeCCCCCCCH-HHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          108 SRNLRNLRLVSCYNISD-QGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      ++++++|.+.++ .++. .+    ++.+++|++|++++|.+++-  .. ...+++|+.|.+.++.....        ..+
T Consensus        39 l~~l~~L~l~~~-~i~~l~~----l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~~--------~~l  102 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKSIDG----VEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADI--------TPL  102 (199)
T ss_dssp             HTTCCEEECTTS-CCCCCTT----GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC--------GGG
T ss_pred             hcCCCEEECCCC-CCCCccc----cccCCCcCcCccccccccCc--cc-ccCCcccccccccccccccc--------ccc
Confidence            568999999876 4443 22    45789999999999977642  22 45689999999987554321        123


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhc
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFC  266 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c  266 (309)
                      . .+++|+.|++.++.+....   -+..+++|+.|++++|.. ..... ...++ +|+.|.+.+|.+++..  .+.    
T Consensus       103 ~-~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n~l-~~~~~-l~~~~-~L~~L~l~~n~l~~l~--~l~----  169 (199)
T d2omxa2         103 A-NLTNLTGLTLFNNQITDID---PLKNLTNLNRLELSSNTI-SDISA-LSGLT-SLQQLNFSSNQVTDLK--PLA----  169 (199)
T ss_dssp             T-TCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCC-CCCGG-GTTCT-TCSEEECCSSCCCCCG--GGT----
T ss_pred             c-ccccccccccccccccccc---ccchhhhhHHhhhhhhhh-ccccc-ccccc-cccccccccccccCCc--ccc----
Confidence            3 8899999999998554321   134689999999998764 33333 34567 8999999999987643  333    


Q ss_pred             cCCcCCCCCCCCccccCCC
Q 021667          267 WSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       267 ~~~~~l~~~~~s~~~~~~d  285 (309)
                       +.+.++.++++++. +++
T Consensus       170 -~l~~L~~L~ls~N~-i~~  186 (199)
T d2omxa2         170 -NLTTLERLDISSNK-VSD  186 (199)
T ss_dssp             -TCTTCCEEECCSSC-CCC
T ss_pred             -CCCCCCEEECCCCC-CCC
Confidence             56788899999885 555

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=2.8e-08  Score=70.41  Aligned_cols=84  Identities=25%  Similarity=0.332  Sum_probs=36.7

Q ss_pred             hcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHH-HHH
Q 021667          132 KGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVG-LQA  210 (309)
Q Consensus       132 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~-l~~  210 (309)
                      ..+++|++|++++|.+..  +......+++|+.|+++++.+...        ..+. .+++|++|++++|.+++-. +..
T Consensus        17 ~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l--------~~~~-~l~~L~~L~l~~N~i~~~~~~~~   85 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENV--------DGVA-NLPRLQELLLCNNRLQQSAAIQP   85 (124)
T ss_dssp             GGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCC--------GGGT-TCSSCCEEECCSSCCCSSSTTGG
T ss_pred             ccCCCCCEEECCCCccCc--chhhhhhhhccccccccccccccc--------Cccc-cccccCeEECCCCccCCCCCchh
Confidence            345555555555554432  111123355555555554433211        0122 4555555555555444221 111


Q ss_pred             HHHhCCCCCeeecCCCC
Q 021667          211 ILDACPHLESLDLRQCF  227 (309)
Q Consensus       211 l~~~~~~L~~L~l~~c~  227 (309)
                       +..+++|+.|++++++
T Consensus        86 -l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          86 -LVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             -GGGCTTCCEEECTTSG
T ss_pred             -hcCCCCCCEEECCCCc
Confidence             2245555555555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.5e-09  Score=86.69  Aligned_cols=62  Identities=16%  Similarity=0.073  Sum_probs=40.8

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      .+++|+.|++++|.++..... .+..+++|++|+|+++...+-...+ ...+ +|+.|+|+||+.
T Consensus       146 ~l~~l~~l~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~L~~lp~~~-~~~~-~L~~L~L~~Np~  207 (266)
T d1p9ag_         146 PTPKLEKLSLANNNLTELPAG-LLNGLENLDTLLLQENSLYTIPKGF-FGSH-LLPFAFLHGNPW  207 (266)
T ss_dssp             TCTTCCEEECTTSCCSCCCTT-TTTTCTTCCEEECCSSCCCCCCTTT-TTTC-CCSEEECCSCCB
T ss_pred             ccccchhcccccccccccCcc-ccccccccceeecccCCCcccChhH-CCCC-CCCEEEecCCCC
Confidence            567888888888876643222 2346788888888887644322222 2345 788888888885

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.48  E-value=1e-07  Score=74.11  Aligned_cols=144  Identities=17%  Similarity=0.145  Sum_probs=102.7

Q ss_pred             CCCccEEEeCCCCCCCH-HHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          108 SRNLRNLRLVSCYNISD-QGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      +.+|+.|.+.++ .++. .+    ++.+++|++|+|++|.+++-  ..+ ..+++|+.|++.++.+..        +..+
T Consensus        45 L~~L~~L~l~~~-~i~~l~~----l~~l~~L~~L~L~~n~i~~l--~~~-~~l~~L~~L~l~~n~i~~--------l~~l  108 (210)
T d1h6ta2          45 LNSIDQIIANNS-DIKSVQG----IQYLPNVTKLFLNGNKLTDI--KPL-ANLKNLGWLFLDENKVKD--------LSSL  108 (210)
T ss_dssp             HHTCCEEECTTS-CCCCCTT----GGGCTTCCEEECCSSCCCCC--GGG-TTCTTCCEEECCSSCCCC--------GGGG
T ss_pred             hcCccEEECcCC-CCCCchh----HhhCCCCCEEeCCCccccCc--ccc-ccCccccccccccccccc--------cccc
Confidence            347999999976 4432 22    46799999999999977652  222 468999999998765532        1223


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhc
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFC  266 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c  266 (309)
                      . .+++|+.|++.++.+..-  . -+..+++|+.+.++++.... .. ....++ +|+.+.+++|.+++.  ..+.    
T Consensus       109 ~-~l~~L~~L~l~~~~~~~~--~-~l~~l~~l~~l~~~~n~l~~-~~-~~~~l~-~L~~l~l~~n~l~~i--~~l~----  175 (210)
T d1h6ta2         109 K-DLKKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNKITD-IT-VLSRLT-KLDTLSLEDNQISDI--VPLA----  175 (210)
T ss_dssp             T-TCTTCCEEECTTSCCCCC--G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCT-TCSEEECCSSCCCCC--GGGT----
T ss_pred             c-cccccccccccccccccc--c-cccccccccccccccccccc-cc-cccccc-ccccccccccccccc--cccc----
Confidence            3 789999999999966542  1 24478999999998876443 32 234567 999999999998764  2233    


Q ss_pred             cCCcCCCCCCCCccc
Q 021667          267 WSSVEDYPSGISDIE  281 (309)
Q Consensus       267 ~~~~~l~~~~~s~~~  281 (309)
                       ..+.++.++++++.
T Consensus       176 -~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         176 -GLTKLQNLYLSKNH  189 (210)
T ss_dssp             -TCTTCCEEECCSSC
T ss_pred             -CCCCCCEEECCCCC
Confidence             56678888888774

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=1.2e-07  Score=80.46  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=67.7

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCC-cc--------
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPK-IE--------  178 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~--------  178 (309)
                      +++|+.|++.++ .+++.  . .+..+++|+.|++.++.+.+.  .. ...+++|++|.++++.+.... ..        
T Consensus       218 ~~~L~~L~l~~n-~l~~~--~-~l~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l  290 (384)
T d2omza2         218 LTNLDELSLNGN-QLKDI--G-TLASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKLGANQISNISPLAGLTALTNL  290 (384)
T ss_dssp             CTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cCCCCEEECCCC-CCCCc--c-hhhcccccchhccccCccCCC--Cc-ccccccCCEeeccCcccCCCCccccccccccc
Confidence            566777777654 33321  1 234567777777777755431  11 234677777777654332110 00        


Q ss_pred             -----cchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          179 -----CDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       179 -----~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                           .-..+.. ...++++++|++++|.+++-.  . +..+++|++|++++|. ++.... ...++ +|++|++++|++
T Consensus       291 ~~~~n~l~~~~~-~~~~~~l~~L~ls~n~l~~l~--~-l~~l~~L~~L~L~~n~-l~~l~~-l~~l~-~L~~L~l~~N~l  363 (384)
T d2omza2         291 ELNENQLEDISP-ISNLKNLTYLTLYFNNISDIS--P-VSSLTKLQRLFFANNK-VSDVSS-LANLT-NINWLSAGHNQI  363 (384)
T ss_dssp             ECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCG--G-GGGCTTCCEEECCSSC-CCCCGG-GGGCT-TCCEEECCSSCC
T ss_pred             cccccccccccc-cchhcccCeEECCCCCCCCCc--c-cccCCCCCEEECCCCC-CCCChh-HcCCC-CCCEEECCCCcC
Confidence                 0000111 225566666666666555321  1 3356666666666663 333333 23455 666666666666


Q ss_pred             Cc
Q 021667          254 HD  255 (309)
Q Consensus       254 ~d  255 (309)
                      ++
T Consensus       364 ~~  365 (384)
T d2omza2         364 SD  365 (384)
T ss_dssp             CB
T ss_pred             CC
Confidence            54

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.43  E-value=1e-07  Score=75.01  Aligned_cols=167  Identities=19%  Similarity=0.186  Sum_probs=108.1

Q ss_pred             CceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcE
Q 021667           86 QLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRS  164 (309)
Q Consensus        86 ~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~  164 (309)
                      .++.+.+.. .+++  +..+ .++++|+.|+++++ .++..  .. +..+++|+.+.++++.+++  +..+ ..+++|+.
T Consensus        42 ~L~~L~l~~~~i~~--l~~l-~~l~~L~~L~ls~n-~i~~~--~~-l~~l~~l~~l~~~~n~~~~--i~~l-~~l~~L~~  111 (227)
T d1h6ua2          42 GITTLSAFGTGVTT--IEGV-QYLNNLIGLELKDN-QITDL--AP-LKNLTKITELELSGNPLKN--VSAI-AGLQSIKT  111 (227)
T ss_dssp             TCCEEECTTSCCCC--CTTG-GGCTTCCEEECCSS-CCCCC--GG-GTTCCSCCEEECCSCCCSC--CGGG-TTCTTCCE
T ss_pred             CcCEEECCCCCCCc--chhH-hcCCCCcEeecCCc-eeecc--cc-ccccccccccccccccccc--cccc-cccccccc
Confidence            567777743 3332  2223 45888999888865 44431  11 4668888888888885543  2222 35788888


Q ss_pred             EEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccC
Q 021667          165 FKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIR  244 (309)
Q Consensus       165 L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~  244 (309)
                      +.+..+.....        ..+. ..+.++.+.+.++.+.....   +..+++|++|++++|.... ... ...++ +|+
T Consensus       112 l~l~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~---~~~~~~L~~L~l~~n~~~~-~~~-l~~l~-~L~  176 (227)
T d1h6ua2         112 LDLTSTQITDV--------TPLA-GLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSD-LTP-LANLS-KLT  176 (227)
T ss_dssp             EECTTSCCCCC--------GGGT-TCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-CGG-GTTCT-TCC
T ss_pred             ccccccccccc--------chhc-cccchhhhhchhhhhchhhh---hcccccccccccccccccc-chh-hcccc-cce
Confidence            88876433211        1122 67788888888876553211   3468899999998876543 222 34577 999


Q ss_pred             ceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          245 DLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       245 ~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      +|++++|.+++..  .+.     ..+.|+.++++++. +++
T Consensus       177 ~L~Ls~n~l~~l~--~l~-----~l~~L~~L~Ls~N~-lt~  209 (227)
T d1h6ua2         177 TLKADDNKISDIS--PLA-----SLPNLIEVHLKNNQ-ISD  209 (227)
T ss_dssp             EEECCSSCCCCCG--GGG-----GCTTCCEEECTTSC-CCB
T ss_pred             ecccCCCccCCCh--hhc-----CCCCCCEEECcCCc-CCC
Confidence            9999999987643  233     45678899999884 444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.41  E-value=5.2e-09  Score=80.84  Aligned_cols=106  Identities=23%  Similarity=0.240  Sum_probs=57.8

Q ss_pred             CCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          108 SRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       108 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      +++|++|+|+++ .++.-  .. +..+++|++|+|++|.+++  +..+...+++|+.|++.++.+..        +..+.
T Consensus        47 L~~L~~L~Ls~n-~I~~i--~~-l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~--------l~~~~  112 (198)
T d1m9la_          47 LKACKHLALSTN-NIEKI--SS-LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS--------LSGIE  112 (198)
T ss_dssp             TTTCCEEECSEE-EESCC--CC-HHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCC--------HHHHH
T ss_pred             ccccceeECccc-CCCCc--cc-ccCCccccChhhccccccc--ccccccccccccccccccccccc--------ccccc
Confidence            567777777644 33321  11 3356677777777774432  11122224467777776543321        22233


Q ss_pred             hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCC
Q 021667          188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFN  228 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~  228 (309)
                       .+++|+.|++++|.+++-.-...+..+++|+.|++++|+.
T Consensus       113 -~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         113 -KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             -HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             -ccccccccccccchhccccccccccCCCccceeecCCCcc
Confidence             5667777777777666533222344677777777776643

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.5e-08  Score=79.79  Aligned_cols=177  Identities=18%  Similarity=0.094  Sum_probs=114.2

Q ss_pred             CCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCc
Q 021667           85 GQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLR  163 (309)
Q Consensus        85 ~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~  163 (309)
                      +.++.|++++ .++.-. ......+++|++|+|+++ .++.-  . ....+++|++|+|++|.+...  ......+++|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N-~l~~l--~-~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~  103 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRA-ELTKL--Q-VDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALT  103 (266)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTS-CCCEE--E-CCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCC
T ss_pred             cCCCEEECcCCcCCCcC-HHHhhccccccccccccc-ccccc--c-ccccccccccccccccccccc--ccccccccccc
Confidence            5788999864 333211 122345899999999976 55531  1 124679999999999966432  22345678999


Q ss_pred             EEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhcc
Q 021667          164 SFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERI  243 (309)
Q Consensus       164 ~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L  243 (309)
                      .|++.++.....  .     ......+++|+.|.+.+|.++.-. ......+++|+.|++++|............++ +|
T Consensus       104 ~L~l~~~~~~~~--~-----~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~-~L  174 (266)
T d1p9ag_         104 VLDVSFNRLTSL--P-----LGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPAGLLNGLE-NL  174 (266)
T ss_dssp             EEECCSSCCCCC--C-----SSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT-TC
T ss_pred             ccccccccccee--e-----ccccccccccccccccccccceec-cccccccccchhcccccccccccCcccccccc-cc
Confidence            999987544321  1     111236789999999998665321 12334678899999999875554334445567 99


Q ss_pred             CceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccC
Q 021667          244 RDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELV  283 (309)
Q Consensus       244 ~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~  283 (309)
                      ++|+|++|.++......+      ....+..+++++-.+.
T Consensus       175 ~~L~Ls~N~L~~lp~~~~------~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         175 DTLLLQENSLYTIPKGFF------GSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CEEECCSSCCCCCCTTTT------TTCCCSEEECCSCCBC
T ss_pred             ceeecccCCCcccChhHC------CCCCCCEEEecCCCCC
Confidence            999999999875433222      3445666777754443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.4e-08  Score=83.01  Aligned_cols=141  Identities=18%  Similarity=0.098  Sum_probs=86.3

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      .+++|+.|++..+. +... .......+++|+.++++++.++... ......+++|+.|++.++.+...    .  ..++
T Consensus       103 ~l~~L~~L~l~~n~-~~~~-~~~~~~~~~~L~~l~l~~N~l~~i~-~~~f~~~~~L~~L~l~~N~l~~l----~--~~~f  173 (284)
T d1ozna_         103 GLGRLHTLHLDRCG-LQEL-GPGLFRGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGNRISSV----P--ERAF  173 (284)
T ss_dssp             TCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCEE----C--TTTT
T ss_pred             ccccCCEEecCCcc-cccc-cccccchhcccchhhhccccccccC-hhHhccccchhhcccccCccccc----c--hhhh
Confidence            46788888887653 2211 1122344678888888887554311 11234567888888876554311    1  1122


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC-Cchhhh
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST-HDYEFG  259 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~-~d~~~~  259 (309)
                      . .+++|+.+.+.+|.++.-.. ..+..+++|++|+++++...+........++ +|+.|++++|++ -|.+..
T Consensus       174 ~-~l~~L~~l~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~-~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         174 R-GLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEALAPLR-ALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             T-TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHHHHTTCT-TCCEEECCSSCEECSGGGH
T ss_pred             c-cccccchhhhhhccccccCh-hHhhhhhhccccccccccccccccccccccc-ccCEEEecCCCCCCCccch
Confidence            2 77888888888886663222 2244678888888888776665545555677 888888888885 354443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=2.5e-07  Score=65.37  Aligned_cols=103  Identities=22%  Similarity=0.165  Sum_probs=73.8

Q ss_pred             CEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCC
Q 021667          138 EELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPH  217 (309)
Q Consensus       138 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~  217 (309)
                      +.|+|+++.++.-  .. ...+++|++|+++++.+..-    ..   .+. .+++|+.|++++|.++.-  .. +..+++
T Consensus         1 R~L~Ls~n~l~~l--~~-l~~l~~L~~L~ls~N~l~~l----p~---~~~-~l~~L~~L~l~~N~i~~l--~~-~~~l~~   66 (124)
T d1dcea3           1 RVLHLAHKDLTVL--CH-LEQLLLVTHLDLSHNRLRAL----PP---ALA-ALRCLEVLQASDNALENV--DG-VANLPR   66 (124)
T ss_dssp             SEEECTTSCCSSC--CC-GGGGTTCCEEECCSSCCCCC----CG---GGG-GCTTCCEEECCSSCCCCC--GG-GTTCSS
T ss_pred             CEEEcCCCCCCCC--cc-cccCCCCCEEECCCCccCcc----hh---hhh-hhhccccccccccccccc--Cc-cccccc
Confidence            4688999977632  23 35688999999998766421    11   233 799999999999987752  22 347899


Q ss_pred             CCeeecCCCCCcCchh-HHHHHhHhccCceecCCCCCCc
Q 021667          218 LESLDLRQCFNVNLVG-KLGKICAERIRDLRHPNDSTHD  255 (309)
Q Consensus       218 L~~L~l~~c~~~~~~~-~l~~~~~~~L~~L~l~~~~~~d  255 (309)
                      |++|+++++....-.. .....++ +|+.|++++|++++
T Consensus        67 L~~L~l~~N~i~~~~~~~~l~~~~-~L~~L~l~~N~i~~  104 (124)
T d1dcea3          67 LQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCT-TCCEEECTTSGGGG
T ss_pred             cCeEECCCCccCCCCCchhhcCCC-CCCEEECCCCcCCc
Confidence            9999999876543211 2235678 99999999999754

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.25  E-value=4.1e-08  Score=75.29  Aligned_cols=38  Identities=11%  Similarity=0.045  Sum_probs=15.4

Q ss_pred             hCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCC
Q 021667          214 ACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDS  252 (309)
Q Consensus       214 ~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~  252 (309)
                      ++++|++|+|+++...+-........+ +|++|+|++|+
T Consensus       100 ~l~~L~~L~L~~N~l~~i~~~~f~~l~-~L~~l~L~~N~  137 (192)
T d1w8aa_         100 GLHQLKTLNLYDNQISCVMPGSFEHLN-SLTSLNLASNP  137 (192)
T ss_dssp             TCTTCCEEECCSSCCCEECTTSSTTCT-TCCEEECTTCC
T ss_pred             CCCcccccccCCccccccCHHHhcCCc-ccccccccccc
Confidence            344444444444433222222222333 44455554444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2e-07  Score=75.88  Aligned_cols=182  Identities=15%  Similarity=0.080  Sum_probs=107.0

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      .+.++.++++. .+.. ........+..++++.+.....++... ...+..+++|++|+++.+.+..... .....+++|
T Consensus        55 l~~L~~L~ls~n~l~~-i~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L  131 (284)
T d1ozna_          55 CRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAAL  131 (284)
T ss_dssp             CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTC
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccccc-chhhcccccCCEEecCCcccccccc-cccchhccc
Confidence            45677777754 2222 112222346677777665443333211 1124567888888888885432111 122446788


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhc
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAER  242 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~  242 (309)
                      +.+.+.++.+...  . .   ..+ ..+++|++|++.+|.++.-.. ..+.++++|+++.++++............++ +
T Consensus       132 ~~l~l~~N~l~~i--~-~---~~f-~~~~~L~~L~l~~N~l~~l~~-~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~-~  202 (284)
T d1ozna_         132 QYLYLQDNALQAL--P-D---DTF-RDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG-R  202 (284)
T ss_dssp             CEEECCSSCCCCC--C-T---TTT-TTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCT-T
T ss_pred             chhhhcccccccc--C-h---hHh-ccccchhhcccccCcccccch-hhhccccccchhhhhhccccccChhHhhhhh-h
Confidence            8888887655421  1 1   112 367788888888887653211 2234678888888888765544334445566 8


Q ss_pred             cCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCcccc
Q 021667          243 IRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       243 L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~  282 (309)
                      |++|++++|.++......+.     ..+.+..+++++-.+
T Consensus       203 L~~L~l~~N~i~~~~~~~~~-----~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALA-----PLRALQYLRLNDNPW  237 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHT-----TCTTCCEEECCSSCE
T ss_pred             cccccccccccccccccccc-----cccccCEEEecCCCC
Confidence            88888888888766666664     445667777765333

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.07  E-value=3.6e-07  Score=75.10  Aligned_cols=141  Identities=18%  Similarity=0.103  Sum_probs=79.3

Q ss_pred             cCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHH
Q 021667          107 RSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAI  186 (309)
Q Consensus       107 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  186 (309)
                      ....+..+...................+++|+.+.+.++.+..-.    ...+++|++|++.++....      .....+
T Consensus       122 ~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~----~~~~~~L~~L~l~~n~~~~------~~~~~~  191 (305)
T d1xkua_         122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPPSLTELHLDGNKITK------VDAASL  191 (305)
T ss_dssp             TCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC----SSCCTTCSEEECTTSCCCE------ECTGGG
T ss_pred             ccccccccccccccccccCCCccccccccccCccccccCCccccC----cccCCccCEEECCCCcCCC------CChhHh
Confidence            345555555543322222112223455677888888777543210    1235678888887643321      111122


Q ss_pred             HhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhh
Q 021667          187 AENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGAD  261 (309)
Q Consensus       187 ~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~  261 (309)
                       ..+++++.|.+++|.++..... .+.++++|++|+|++|...+ +..-...++ +|+.|+|++|.++..+...+
T Consensus       192 -~~~~~l~~L~~s~n~l~~~~~~-~~~~l~~L~~L~L~~N~L~~-lp~~l~~l~-~L~~L~Ls~N~i~~i~~~~f  262 (305)
T d1xkua_         192 -KGLNNLAKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLVK-VPGGLADHK-YIQVVYLHNNNISAIGSNDF  262 (305)
T ss_dssp             -TTCTTCCEEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCSS-CCTTTTTCS-SCCEEECCSSCCCCCCTTSS
T ss_pred             -hccccccccccccccccccccc-cccccccceeeecccccccc-ccccccccc-CCCEEECCCCccCccChhhc
Confidence             3677888888888866643222 33467888888888875443 222234466 88888888888776554444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.04  E-value=2.4e-06  Score=72.11  Aligned_cols=146  Identities=18%  Similarity=0.135  Sum_probs=88.6

Q ss_pred             CCCceEEeccc-cCChHHHHHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHH-HH--------
Q 021667           84 NGQLLSINIEY-FGTDELLQYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEA-LE--------  153 (309)
Q Consensus        84 ~~~l~~l~l~~-~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~--------  153 (309)
                      .+.++.+++.. .+++-  .. ...+++|+.|.+.++ .++..  .. ...+++|++|+++++.+.... +.        
T Consensus       218 ~~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n-~l~~~--~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l  290 (384)
T d2omza2         218 LTNLDELSLNGNQLKDI--GT-LASLTNLTDLDLANN-QISNL--AP-LSGLTKLTELKLGANQISNISPLAGLTALTNL  290 (384)
T ss_dssp             CTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSS-CCCCC--GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cCCCCEEECCCCCCCCc--ch-hhcccccchhccccC-ccCCC--Cc-ccccccCCEeeccCcccCCCCccccccccccc
Confidence            34566666643 22221  11 234677777777755 33321  11 345677777777666432110 00        


Q ss_pred             ----------HHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeec
Q 021667          154 ----------AVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDL  223 (309)
Q Consensus       154 ----------~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l  223 (309)
                                .....+++++.|+++++.+...        ..+ ..+++|++|++++|.+++-  .. +..+++|++|++
T Consensus       291 ~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l--------~~l-~~l~~L~~L~L~~n~l~~l--~~-l~~l~~L~~L~l  358 (384)
T d2omza2         291 ELNENQLEDISPISNLKNLTYLTLYFNNISDI--------SPV-SSLTKLQRLFFANNKVSDV--SS-LANLTNINWLSA  358 (384)
T ss_dssp             ECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC--------GGG-GGCTTCCEEECCSSCCCCC--GG-GGGCTTCCEEEC
T ss_pred             cccccccccccccchhcccCeEECCCCCCCCC--------ccc-ccCCCCCEEECCCCCCCCC--hh-HcCCCCCCEEEC
Confidence                      1134467778888776544321        123 3899999999999988752  23 457999999999


Q ss_pred             CCCCCcCchhHHHHHhHhccCceecCCC
Q 021667          224 RQCFNVNLVGKLGKICAERIRDLRHPND  251 (309)
Q Consensus       224 ~~c~~~~~~~~l~~~~~~~L~~L~l~~~  251 (309)
                      ++|.. ++... ...++ +|+.|+|++|
T Consensus       359 ~~N~l-~~l~~-l~~l~-~L~~L~L~~N  383 (384)
T d2omza2         359 GHNQI-SDLTP-LANLT-RITQLGLNDQ  383 (384)
T ss_dssp             CSSCC-CBCGG-GTTCT-TCSEEECCCE
T ss_pred             CCCcC-CCChh-hccCC-CCCEeeCCCC
Confidence            98764 44443 45678 9999999886

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.00  E-value=5e-06  Score=67.97  Aligned_cols=85  Identities=18%  Similarity=0.062  Sum_probs=54.3

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhccC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCWS  268 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~~  268 (309)
                      .+++|++|++.++.++..... .+..++.++.|++++|............++ +|++|+|++|.++... ..+.     .
T Consensus       169 ~~~~L~~L~l~~n~~~~~~~~-~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~-~L~~L~L~~N~L~~lp-~~l~-----~  240 (305)
T d1xkua_         169 LPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNKLVKVP-GGLA-----D  240 (305)
T ss_dssp             CCTTCSEEECTTSCCCEECTG-GGTTCTTCCEEECCSSCCCEECTTTGGGST-TCCEEECCSSCCSSCC-TTTT-----T
T ss_pred             cCCccCEEECCCCcCCCCChh-Hhhccccccccccccccccccccccccccc-cceeeecccccccccc-cccc-----c
Confidence            356777888877754433222 234677888888887755443344555677 8999999998876432 1232     4


Q ss_pred             CcCCCCCCCCccc
Q 021667          269 SVEDYPSGISDIE  281 (309)
Q Consensus       269 ~~~l~~~~~s~~~  281 (309)
                      .+.|+.+++++..
T Consensus       241 l~~L~~L~Ls~N~  253 (305)
T d1xkua_         241 HKYIQVVYLHNNN  253 (305)
T ss_dssp             CSSCCEEECCSSC
T ss_pred             ccCCCEEECCCCc
Confidence            5677777777754

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.92  E-value=9e-08  Score=73.64  Aligned_cols=110  Identities=14%  Similarity=0.140  Sum_probs=77.4

Q ss_pred             HHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHH
Q 021667          130 AIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQ  209 (309)
Q Consensus       130 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~  209 (309)
                      -+..+++|++|+|++|.+.+  +..+ ..+++|+.|+++++.+..-     ..   +...+++|++|++.+|.++.-  .
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~--i~~l-~~l~~L~~L~Ls~N~i~~i-----~~---~~~~~~~L~~L~l~~N~i~~l--~  109 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK--ISSL-SGMENLRILSLGRNLIKKI-----EN---LDAVADTLEELWISYNQIASL--S  109 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC--CCCH-HHHTTCCEEECCEEEECSC-----SS---HHHHHHHCCEEECSEEECCCH--H
T ss_pred             HHhcccccceeECcccCCCC--cccc-cCCccccChhhcccccccc-----cc---ccccccccccccccccccccc--c
Confidence            34568999999999996653  1222 3578999999998665421     11   222346799999999988853  2


Q ss_pred             HHHHhCCCCCeeecCCCCCcCchhH--HHHHhHhccCceecCCCCCCc
Q 021667          210 AILDACPHLESLDLRQCFNVNLVGK--LGKICAERIRDLRHPNDSTHD  255 (309)
Q Consensus       210 ~l~~~~~~L~~L~l~~c~~~~~~~~--l~~~~~~~L~~L~l~~~~~~d  255 (309)
                      . +..+++|+.|++++|.. +....  ....++ +|+.|++++|+++.
T Consensus       110 ~-~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~-~L~~L~L~~N~l~~  154 (198)
T d1m9la_         110 G-IEKLVNLRVLYMSNNKI-TNWGEIDKLAALD-KLEDLLLAGNPLYN  154 (198)
T ss_dssp             H-HHHHHHSSEEEESEEEC-CCHHHHHHHTTTT-TCSEEEECSSHHHH
T ss_pred             c-ccccccccccccccchh-ccccccccccCCC-ccceeecCCCcccc
Confidence            2 34678999999998764 33332  345677 99999999998643

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=9.7e-06  Score=59.75  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=19.4

Q ss_pred             HHhcCCCcCEEEecCCCCCHH-HHHHHHhcCCCCcEEEeccCC
Q 021667          130 AIKGFPLLEELELSYCSLSQE-ALEAVGSLCPLLRSFKLNNRG  171 (309)
Q Consensus       130 ~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~  171 (309)
                      +...+++|++|+|++|.+++- .+......+++|+.|+++++.
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~  102 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE  102 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc
Confidence            334455666666665544321 122222335555555555433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.73  E-value=1.7e-06  Score=65.98  Aligned_cols=113  Identities=12%  Similarity=0.067  Sum_probs=71.6

Q ss_pred             CCCcEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHh
Q 021667          160 PLLRSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKIC  239 (309)
Q Consensus       160 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~  239 (309)
                      +++++|+++++.+...  .    .......+++|++|++++|.+...... .+...++|++|+++++....-....+...
T Consensus        29 ~~l~~L~Ls~N~i~~~--~----~~~~f~~l~~L~~L~L~~N~i~~~~~~-~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l  101 (192)
T d1w8aa_          29 LHTTELLLNDNELGRI--S----SDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNKMFLGL  101 (192)
T ss_dssp             TTCSEEECCSCCCCSB--C----CSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred             CCCCEEEeCCCCCccc--c----cccccCCCceEeeeecccccccccccc-ccccccccceeeeccccccccCHHHHhCC
Confidence            3677777776544311  0    001112678889999988866532222 23367889999998876544333445667


Q ss_pred             HhccCceecCCCCCCchhhhhhhhhhccCCcCCCCCCCCccccCCC
Q 021667          240 AERIRDLRHPNDSTHDYEFGADFQDFCWSSVEDYPSGISDIELVSD  285 (309)
Q Consensus       240 ~~~L~~L~l~~~~~~d~~~~~~~~~~c~~~~~l~~~~~s~~~~~~d  285 (309)
                      + +|++|+|++|.++.....++.     ..+.+..+++++-....+
T Consensus       102 ~-~L~~L~L~~N~l~~i~~~~f~-----~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         102 H-QLKTLNLYDNQISCVMPGSFE-----HLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             T-TCCEEECCSSCCCEECTTSST-----TCTTCCEEECTTCCBCCS
T ss_pred             C-cccccccCCccccccCHHHhc-----CCcccccccccccccccc
Confidence            8 999999999998766555554     455677777776554433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=1.2e-05  Score=59.28  Aligned_cols=94  Identities=21%  Similarity=0.180  Sum_probs=59.3

Q ss_pred             HHHHHhcCCCccEEEeCCCCCCCH-HHHHHHHhcCCCcCEEEecCCCCCHHH-HHHHHhcCCCCcEEEeccCCCCCCCcc
Q 021667          101 LQYIANRSRNLRNLRLVSCYNISD-QGFCEAIKGFPLLEELELSYCSLSQEA-LEAVGSLCPLLRSFKLNNRGHRCPKIE  178 (309)
Q Consensus       101 l~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~~  178 (309)
                      +..+...+++|+.|+|+++ .++. .++......+++|+.|+|++|.+++-. +.. .. ..+|+.|.+.++.+......
T Consensus        57 l~~~~~~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l~-~~~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IK-GLKLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-HT-TCCCSSCCCTTSTTSSSSSS
T ss_pred             hHHHHHhCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCccccchhhhh-hh-ccccceeecCCCCcCcCccc
Confidence            4455667999999999976 5553 345556678999999999999776522 222 22 34688888877655432111


Q ss_pred             cchhHHHHHhcCCCCcEEE
Q 021667          179 CDDDAKAIAENMHGLRHLQ  197 (309)
Q Consensus       179 ~~~~~~~l~~~~~~L~~L~  197 (309)
                      .......+...+|+|+.|+
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence            1223344555677777653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.32  E-value=2.6e-06  Score=70.01  Aligned_cols=155  Identities=10%  Similarity=0.026  Sum_probs=87.3

Q ss_pred             CceEEeccc-cCChH-HH-HHHHhcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCC
Q 021667           86 QLLSINIEY-FGTDE-LL-QYIANRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLL  162 (309)
Q Consensus        86 ~l~~l~l~~-~~~~~-~l-~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L  162 (309)
                      +++.|++.. .++.. .+ ..++ .+++|++|+|+++..++.. ++.-+..+++|++|+|++|.+..... .....+++|
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~-~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L  127 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTC
T ss_pred             EEEEEECCCCCCCCCCCCChHHh-cCccccccccccccccccc-cccccccccccchhhhcccccccccc-ccccchhhh
Confidence            688888854 22211 12 2333 4889999999764443311 22235568999999999986543211 223457889


Q ss_pred             cEEEeccCCCCCCCcccchhHHHHHhcCCCCcEEEecCCccChHHHHHHHHhCCC-CCeeecCCCCCcCchhHHHHHhHh
Q 021667          163 RSFKLNNRGHRCPKIECDDDAKAIAENMHGLRHLQLFGNELTNVGLQAILDACPH-LESLDLRQCFNVNLVGKLGKICAE  241 (309)
Q Consensus       163 ~~L~l~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~-L~~L~l~~c~~~~~~~~l~~~~~~  241 (309)
                      +.+.+..+.....      ....+. .+++|+.+++++|.++......+. ..+. ++.+.++++.............  
T Consensus       128 ~~l~l~~N~~~~~------~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l--  197 (313)
T d1ogqa_         128 VTLDFSYNALSGT------LPPSIS-SLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANL--  197 (313)
T ss_dssp             CEEECCSSEEESC------CCGGGG-GCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGC--
T ss_pred             ccccccccccccc------Cchhhc-cCcccceeeccccccccccccccc-ccccccccccccccccccccccccccc--
Confidence            9998876443321      111233 788999999998866532222222 3444 4778887765443322222222  


Q ss_pred             ccCceecCCCCC
Q 021667          242 RIRDLRHPNDST  253 (309)
Q Consensus       242 ~L~~L~l~~~~~  253 (309)
                      ....+++.++..
T Consensus       198 ~~~~l~l~~~~~  209 (313)
T d1ogqa_         198 NLAFVDLSRNML  209 (313)
T ss_dssp             CCSEEECCSSEE
T ss_pred             cccccccccccc
Confidence            344566666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.21  E-value=9.4e-06  Score=66.58  Aligned_cols=139  Identities=11%  Similarity=0.030  Sum_probs=86.8

Q ss_pred             CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecC-CCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHH
Q 021667          109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSY-CSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIA  187 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  187 (309)
                      .+++.|+|.++.-.....+..-+..+++|++|+|++ +.+....... ...+++|++|+++++.+...       .....
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~-i~~L~~L~~L~Ls~N~l~~~-------~~~~~  121 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGA-------IPDFL  121 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEE-------CCGGG
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccc-cccccccchhhhcccccccc-------ccccc
Confidence            379999998763222222334456799999999986 4443211112 34589999999998655421       11122


Q ss_pred             hcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCch
Q 021667          188 ENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDY  256 (309)
Q Consensus       188 ~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~  256 (309)
                      ..+++|+.+++.+|.+...... -+..++.|+.++++++................++.+.+++|.++..
T Consensus       122 ~~~~~L~~l~l~~N~~~~~~p~-~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~  189 (313)
T d1ogqa_         122 SQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             GGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             cchhhhcccccccccccccCch-hhccCcccceeecccccccccccccccccccccccccccccccccc
Confidence            3788999999999854422111 2347899999999988765443222233341457888888886543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=3.6e-05  Score=56.15  Aligned_cols=70  Identities=19%  Similarity=0.167  Sum_probs=42.2

Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCC-chhhhhh
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTH-DYEFGAD  261 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~-d~~~~~~  261 (309)
                      .+++|+.|++++|.++.-.-. .+..+++|++|+|+++...+-...... .. +|++|+|++|++. |..+..+
T Consensus        54 ~l~~L~~L~Ls~N~l~~i~~~-~f~~l~~L~~L~Ls~N~l~~l~~~~~~-~~-~l~~L~L~~Np~~C~C~~~~l  124 (156)
T d2ifga3          54 GLGELRNLTIVKSGLRFVAPD-AFHFTPRLSRLNLSFNALESLSWKTVQ-GL-SLQELVLSGNPLHCSCALRWL  124 (156)
T ss_dssp             SCCCCSEEECCSSCCCEECTT-GGGSCSCCCEEECCSSCCSCCCSTTTC-SC-CCCEEECCSSCCCCCGGGHHH
T ss_pred             cccccCcceeeccccCCcccc-cccccccccceeccCCCCcccChhhhc-cc-cccccccCCCcccCCchHHHH
Confidence            677788888877766532212 234677888888877765443222222 23 5888888888863 4444433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=2.3e-06  Score=67.52  Aligned_cols=63  Identities=14%  Similarity=0.013  Sum_probs=32.3

Q ss_pred             CCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCch-hHHHHHhHhccCceecCCCCCCchh
Q 021667          192 GLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLV-GKLGKICAERIRDLRHPNDSTHDYE  257 (309)
Q Consensus       192 ~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~-~~l~~~~~~~L~~L~l~~~~~~d~~  257 (309)
                      .++.|.+.++.++.-...  +-..++++.+....+..++.. ......++ +|+.|++++|.++..+
T Consensus       154 ~l~~L~l~~n~l~~i~~~--~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~-~L~~L~Ls~N~l~~l~  217 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNC--AFNGTQLDELNLSDNNNLEELPNDVFHGAS-GPVILDISRTRIHSLP  217 (242)
T ss_dssp             SCEEEECCSSCCCEECTT--TTTTCCEEEEECTTCTTCCCCCTTTTTTSC-CCSEEECTTSCCCCCC
T ss_pred             cceeeecccccccccccc--cccchhhhccccccccccccccHHHhcCCC-CCCEEECCCCcCCccC
Confidence            566666666655421111  112345555544444444432 22334566 7788888777766443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=3.1e-06  Score=66.80  Aligned_cols=162  Identities=10%  Similarity=0.014  Sum_probs=75.9

Q ss_pred             hcCCCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCC-CCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHH
Q 021667          106 NRSRNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYC-SLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAK  184 (309)
Q Consensus       106 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  184 (309)
                      .++++|++|++.++...... -...+..+++++++.+..+ .+..... .....+++|+.|.+.++.+....     . .
T Consensus        50 ~~l~~L~~L~ls~n~~~~~i-~~~~f~~l~~l~~l~~~~~n~l~~~~~-~~~~~l~~L~~l~l~~~~l~~~~-----~-~  121 (242)
T d1xwdc1          50 SGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLP-----D-V  121 (242)
T ss_dssp             TTCTTCCEEEEESCTTCCEE-CSSSEESCTTCCEEEEECCTTCCEECT-TSEECCTTCCEEEEESCCCCSCC-----C-C
T ss_pred             hccchhhhhhhcccccccee-ecccccccccccccccccccccccccc-ccccccccccccccchhhhcccc-----c-c
Confidence            34677777777754222110 0112334677777766553 3322111 12245677777777765443210     0 0


Q ss_pred             HHHhcCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCce-ecCCCCCCchhhhhhhh
Q 021667          185 AIAENMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDL-RHPNDSTHDYEFGADFQ  263 (309)
Q Consensus       185 ~l~~~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L-~l~~~~~~d~~~~~~~~  263 (309)
                      ......+.|..+...++.+..-....+......++.|+++++... .........+ +++++ .+.++.++......+. 
T Consensus       122 ~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~~~~-~l~~~~~l~~n~l~~l~~~~f~-  198 (242)
T d1xwdc1         122 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAFNGT-QLDELNLSDNNNLEELPNDVFH-  198 (242)
T ss_dssp             TTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTTTTC-CEEEEECTTCTTCCCCCTTTTT-
T ss_pred             cccccccccccccccccccccccccccccccccceeeeccccccc-ccccccccch-hhhccccccccccccccHHHhc-
Confidence            111133444444444444432211111111235677777664433 2222222234 45555 4455667665555554 


Q ss_pred             hhccCCcCCCCCCCCcccc
Q 021667          264 DFCWSSVEDYPSGISDIEL  282 (309)
Q Consensus       264 ~~c~~~~~l~~~~~s~~~~  282 (309)
                          ..+.++.+++++...
T Consensus       199 ----~l~~L~~L~Ls~N~l  213 (242)
T d1xwdc1         199 ----GASGPVILDISRTRI  213 (242)
T ss_dssp             ----TSCCCSEEECTTSCC
T ss_pred             ----CCCCCCEEECCCCcC
Confidence                456777777776643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00017  Score=52.41  Aligned_cols=86  Identities=13%  Similarity=0.085  Sum_probs=57.3

Q ss_pred             cCCCCcEEEecCC-ccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCCCchhhhhhhhhhcc
Q 021667          189 NMHGLRHLQLFGN-ELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDSTHDYEFGADFQDFCW  267 (309)
Q Consensus       189 ~~~~L~~L~l~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~~d~~~~~~~~~~c~  267 (309)
                      .+++|++|.+.++ .++.-.... +.++++|+.|+++++....-........+ +|++|+|++|.++......+      
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~-~L~~L~Ls~N~l~~l~~~~~------  100 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSGLRFVAPDAFHFTP-RLSRLNLSFNALESLSWKTV------  100 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSSCCCEECTTGGGSCS-CCCEEECCSSCCSCCCSTTT------
T ss_pred             CccccCeeecCCCccccccCchh-hccccccCcceeeccccCCcccccccccc-cccceeccCCCCcccChhhh------
Confidence            6778899999766 455322222 34689999999998875443344456677 99999999999875444444      


Q ss_pred             CCcCCCCCCCCcccc
Q 021667          268 SSVEDYPSGISDIEL  282 (309)
Q Consensus       268 ~~~~l~~~~~s~~~~  282 (309)
                      ....+..+++++-.+
T Consensus       101 ~~~~l~~L~L~~Np~  115 (156)
T d2ifga3         101 QGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSCCCCEEECCSSCC
T ss_pred             ccccccccccCCCcc
Confidence            223466666664433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.95  E-value=0.0033  Score=51.19  Aligned_cols=115  Identities=21%  Similarity=0.209  Sum_probs=74.7

Q ss_pred             CCccEEEeCCCCCCCHHHHHHHHhcCCCcCEEEecCCCCCHHHHHHHHhcCCCCcEEEeccCCCCCCCcccchhHHHHHh
Q 021667          109 RNLRNLRLVSCYNISDQGFCEAIKGFPLLEELELSYCSLSQEALEAVGSLCPLLRSFKLNNRGHRCPKIECDDDAKAIAE  188 (309)
Q Consensus       109 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  188 (309)
                      .++++|+|+++ .++.  ++   ...++|++|+|+++.++.     +.....+|+.|.+.++.+..-  .         .
T Consensus        38 ~~l~~LdLs~~-~L~~--lp---~~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~l~~n~l~~l--~---------~   95 (353)
T d1jl5a_          38 RQAHELELNNL-GLSS--LP---ELPPHLESLVASCNSLTE-----LPELPQSLKSLLVDNNNLKAL--S---------D   95 (353)
T ss_dssp             HTCSEEECTTS-CCSC--CC---SCCTTCSEEECCSSCCSS-----CCCCCTTCCEEECCSSCCSCC--C---------S
T ss_pred             cCCCEEEeCCC-CCCC--CC---CCCCCCCEEECCCCCCcc-----cccchhhhhhhhhhhcccchh--h---------h
Confidence            47999999865 4442  11   235899999999987653     113356899999987655421  1         1


Q ss_pred             cCCCCcEEEecCCccChHHHHHHHHhCCCCCeeecCCCCCcCchhHHHHHhHhccCceecCCCCC
Q 021667          189 NMHGLRHLQLFGNELTNVGLQAILDACPHLESLDLRQCFNVNLVGKLGKICAERIRDLRHPNDST  253 (309)
Q Consensus       189 ~~~~L~~L~l~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~~~~~~~l~~~~~~~L~~L~l~~~~~  253 (309)
                      -.++|++|++++|.++.-  .. ...+++|+.|+++++.......    ..+ .+..+.+..+..
T Consensus        96 lp~~L~~L~L~~n~l~~l--p~-~~~l~~L~~L~l~~~~~~~~~~----~~~-~l~~l~~~~~~~  152 (353)
T d1jl5a_          96 LPPLLEYLGVSNNQLEKL--PE-LQNSSFLKIIDVDNNSLKKLPD----LPP-SLEFIAAGNNQL  152 (353)
T ss_dssp             CCTTCCEEECCSSCCSSC--CC-CTTCTTCCEEECCSSCCSCCCC----CCT-TCCEEECCSSCC
T ss_pred             hccccccccccccccccc--cc-hhhhccceeecccccccccccc----ccc-cccchhhccccc
Confidence            235799999999977632  11 2357889999998876544321    123 566777766553

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=93.39  E-value=0.0089  Score=48.50  Aligned_cols=13  Identities=15%  Similarity=0.146  Sum_probs=6.7

Q ss_pred             ccCceecCCCCCC
Q 021667          242 RIRDLRHPNDSTH  254 (309)
Q Consensus       242 ~L~~L~l~~~~~~  254 (309)
                      +|+.|++++|.++
T Consensus       305 ~L~~L~L~~N~L~  317 (353)
T d1jl5a_         305 RLERLIASFNHLA  317 (353)
T ss_dssp             TCCEEECCSSCCS
T ss_pred             CCCEEECCCCcCC
Confidence            4555555555544