Citrus Sinensis ID: 021676

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWLLFFFYFLFFIFYFFG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccccccHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
menavdlsrnSVFYQmktgnqavgtdvqfGTLSKTLAssdinlsshivgsqsmplqkepqsnlisvssghrenwgesnmaeaspitdtstddtedknqrfergqltavaasdssdkskeksgdQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGifisssgdqshsmsgngaaAFDVEYSRWLEEHNRHIVELRAAvnshagdteLRTIVDNVTSHFDEIFRLKGIASKADVFHILSGmwktpaercfmwiggfrsselLKVSRLLIAIVPTGIWLLFFFYFLFFIFYFFG
Flexible Loop (DISEMBL)
MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSNLISVSSGHRENWgesnmaeaspitdtstddTEDKNQRfergqltavaasdssdkskeksgdqktlrRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAavnshagdtELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWLLFFFYFLFFIFYFFG
Low Complexity Region (SEG)
MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAAsdssdkskeksgdQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTqleqelqrarqqGIFIsssgdqshsmsGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWllfffyflffifyffG
Disordered region (IsUnstruct)
***********VFYQMKTGNQAVGTDVQFGTL**************************************************************************************************************************************************************AAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWLLFFFYFLFFIFYFF*
Disordered Region (DISOPRED)
**NAVDLSRNS***************************************************************************************************************************************YVQQLESSRLK********************************AAAFDVEYSRWLEEHNRHIVE***************TIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWLLFFFYFLFFIFYFFG
Disordered Region (DISEMBL)
MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGS**********SNLISVSSGHRENWGESNM*****************NQRFERGQLT*********************RRLAQ*****************QLESSRLKLTQLEQELQRARQQGIFIS***********NGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWLLFFFYFLFFIFYFFG
Disordered Region (DISPRO)
*****DLSRNSVFYQMKTGN*****************************************************************************************************GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQS**MSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWLLFFFYFLFFIFYFFG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAARKSRLRxxxxxxxxxxxxxxxxxxxxxxxxxxxxGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWLLFFFYFLFFIFYFFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q41558	476	Transcription factor HBP-	N/A	no	0.899	0.584	0.627	2e-99
O24160	456	TGACG-sequence-specific D	N/A	no	0.857	0.581	0.652	4e-98
P23923	332	Transcription factor HBP-	N/A	no	0.650	0.605	0.777	3e-91
Q39140	330	Transcription factor TGA6	yes	no	0.647	0.606	0.738	1e-81
P43273	330	Transcription factor TGA2	no	no	0.650	0.609	0.722	2e-76
Q39163	330	Transcription factor TGA5	no	no	0.647	0.606	0.674	2e-74
Q9SX27	452	Transcription factor PERI	no	no	0.576	0.393	0.655	4e-65
Q39234	384	Transcription factor TGA3	no	no	0.546	0.440	0.580	1e-51
P14232	359	TGACG-sequence-specific D	N/A	no	0.508	0.437	0.627	2e-51
Q39237	368	Transcription factor TGA1	no	no	0.501	0.421	0.614	5e-51

>sp|Q41558|HBP1C_WHEAT Transcription factor HBP-1b(c1) (Fragment) OS=Triticum aestivum PE=1 SV=2

 Score =  362 bits (930), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/290 (62%), Positives = 228/290 (78%), Gaps = 12/290 (4%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTD-VQFGTLSKTLASSDINLSSHIV------GSQSM 53
           +E+  + S N++F  +K    A  +D +QFG   K+++ +D+  ++           Q++
Sbjct: 59  IEDLANFSTNNLF-NLKPNTHAYTSDPLQFGNYGKSISPTDLATTAAAAAAVTAVDPQAL 117

Query: 54  PLQKEPQSNLISVSSGHRENWGESNMAEASPITDTSTD---DTEDKNQRFERGQLTAVAA 110
             QK  Q NL+++ + + +NWGES+MA+ SP TDTSTD   D +++NQ FE+GQL A  A
Sbjct: 118 LQQKGVQPNLVALRTHNNDNWGESSMADTSPRTDTSTDPDIDIDERNQMFEQGQLAAPTA 177

Query: 111 SDSSDKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQ 170
           SDSSDKS++K  D K+LRRLAQNREAARKSRLRKKAY+Q LESSRLKLTQLEQELQRARQ
Sbjct: 178 SDSSDKSRDKL-DHKSLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQELQRARQ 236

Query: 171 QGIFISSSGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDN 230
           QGIFISSSGDQS S SGNGA AFD+EY+RWLEEHN+HI ELRAA N+HAGD +LR IVD+
Sbjct: 237 QGIFISSSGDQSQSASGNGAVAFDMEYARWLEEHNKHINELRAAANAHAGDDDLRKIVDS 296

Query: 231 VTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           + S +DE FRLKG+A+KADVFH+LSGMWKTPAERCFMW+GGFRSSELLK+
Sbjct: 297 IMSQYDEFFRLKGVAAKADVFHVLSGMWKTPAERCFMWLGGFRSSELLKL 346

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Triticum aestivum (taxid: 4565)

>sp|O24160|TGA21_TOBAC TGACG-sequence-specific DNA-binding protein TGA-2.1 OS=Nicotiana tabacum GN=TGA21 PE=1 SV=1

 Score =  358 bits (918), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 182/279 (65%), Positives = 217/279 (77%), Gaps = 14/279 (5%)

Query: 3   NAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSN 62
           +  +++R+ +F      N AVG +V  GT+++TLA S+ +L +    SQ+M LQ    SN
Sbjct: 58  DGANVNRSPLFNSTSATNPAVGFEVS-GTINRTLAPSNTSLPTATPRSQTMLLQ----SN 112

Query: 63  LISVSSGHRENWGESNMAEASPITDTSTD-DTEDKNQRFERGQLTAVAASDSSDKSKEKS 121
           L+S S  H ENWGESNMA++   TDTSTD D +DKNQ  E GQ        SSDKSKEK 
Sbjct: 113 LVSASGTHHENWGESNMADSGSRTDTSTDMDGDDKNQLIEAGQ--------SSDKSKEKV 164

Query: 122 GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ 181
            DQKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKL+QLEQ+LQRARQQG +IS+  DQ
Sbjct: 165 LDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQRARQQGKYISNIADQ 224

Query: 182 SHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRL 241
           S+ +  NG  AFD EYSRWLEEHN+HI ELR AVN+HA D ELR+IV+NVT+HFDE+FR+
Sbjct: 225 SNGVGANGPLAFDAEYSRWLEEHNKHINELRTAVNAHASDPELRSIVNNVTAHFDEVFRV 284

Query: 242 KGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           KG A+KADVFH+LSGMWKTPAERCFMWIGGFR SELLK+
Sbjct: 285 KGNAAKADVFHVLSGMWKTPAERCFMWIGGFRPSELLKL 323

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.

Nicotiana tabacum (taxid: 4097)

>sp|P23923|HBP1B_WHEAT Transcription factor HBP-1b(c38) OS=Triticum aestivum PE=2 SV=1

 Score =  335 bits (858), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 157/202 (77%), Positives = 179/202 (88%), Gaps = 1/202 (0%)

Query: 79  MAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAAR 138
           MAEASP T+TSTDDT D+N   E G       SDSSD+S++K+GDQKT+RRLAQNREAAR
Sbjct: 1   MAEASPRTETSTDDT-DENLMLEPGNAALAVVSDSSDRSRDKNGDQKTMRRLAQNREAAR 59

Query: 139 KSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYS 198
           KSRLRKKAYVQQLE+SRLKLTQLEQELQRARQQGIFISSS DQSHSMSGNGA AFD EY+
Sbjct: 60  KSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGIFISSSADQSHSMSGNGALAFDTEYA 119

Query: 199 RWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMW 258
           RWLEEHNR + ELRAAVN+HAGDTELR++V+ + SH+DEIF+ KG A+KADVFH+LSGMW
Sbjct: 120 RWLEEHNRQVNELRAAVNAHAGDTELRSVVEKIMSHYDEIFKQKGNAAKADVFHVLSGMW 179

Query: 259 KTPAERCFMWIGGFRSSELLKV 280
           KTPAERCF+W+GGFR SELLK+
Sbjct: 180 KTPAERCFLWLGGFRPSELLKL 201

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q39140|TGA6_ARATH Transcription factor TGA6 OS=Arabidopsis thaliana GN=TGA6 PE=1 SV=2

 Score =  303 bits (776), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 150/203 (73%), Positives = 176/203 (86%), Gaps = 3/203 (1%)

Query: 79  MAEASPITDTSTD-DTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAA 137
           MA+ S  TD STD DT+ ++   +RG + A AASDSSD+SK+K  DQKTLRRLAQNREAA
Sbjct: 1   MADTSSRTDVSTDGDTDHRDLGSDRGHMHA-AASDSSDRSKDKL-DQKTLRRLAQNREAA 58

Query: 138 RKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEY 197
           RKSRLRKKAYVQQLE+SRLKLTQLEQELQRARQQG+FISSSGDQ+HS  GNGA AFD E+
Sbjct: 59  RKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISSSGDQAHSTGGNGALAFDAEH 118

Query: 198 SRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGM 257
           SRWLEE NR + ELR+A+N+HAGDTELR IVD V +H++E+FR+K  A+K DVFH+LSGM
Sbjct: 119 SRWLEEKNRQMNELRSALNAHAGDTELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGM 178

Query: 258 WKTPAERCFMWIGGFRSSELLKV 280
           WKTPAERCF+W+GGFRSSELLK+
Sbjct: 179 WKTPAERCFLWLGGFRSSELLKL 201

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P43273|TGA2_ARATH Transcription factor TGA2 OS=Arabidopsis thaliana GN=TGA2 PE=1 SV=1

 Score =  286 bits (731), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/202 (72%), Positives = 169/202 (83%), Gaps = 1/202 (0%)

Query: 79  MAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAAR 138
           MA+ SP TD STDD  D       G L   AASDSSD+SK K  DQKTLRRLAQNREAAR
Sbjct: 1   MADTSPRTDVSTDDDTDHPDLGSEGALVNTAASDSSDRSKGKM-DQKTLRRLAQNREAAR 59

Query: 139 KSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEYS 198
           KSRLRKKAYVQQLE+SRLKLTQLEQELQRARQQG+FIS +GDQ+HS  GNGA AFD E+S
Sbjct: 60  KSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISGTGDQAHSTGGNGALAFDAEHS 119

Query: 199 RWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMW 258
           RWLEE N+ + ELR+A+N+HAGD+ELR IVD V +H++E+FR+K  A+K DVFH+LSGMW
Sbjct: 120 RWLEEKNKQMNELRSALNAHAGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMW 179

Query: 259 KTPAERCFMWIGGFRSSELLKV 280
           KTPAERCF+W+GGFRSSELLK+
Sbjct: 180 KTPAERCFLWLGGFRSSELLKL 201

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the C-boxes (5'-ATGACGTCAT-3') with high affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39163|TGA5_ARATH Transcription factor TGA5 OS=Arabidopsis thaliana GN=TGA5 PE=1 SV=2

 Score =  279 bits (714), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/203 (67%), Positives = 165/203 (81%), Gaps = 3/203 (1%)

Query: 79  MAEASPITDTSTD-DTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAA 137
           M + SP T  STD DT+  N  F+ G L   A+  S     +   DQKTLRRLAQNREAA
Sbjct: 1   MGDTSPRTSVSTDGDTDHNNLMFDEGHLGIGASDSSDRSKSKM--DQKTLRRLAQNREAA 58

Query: 138 RKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHSMSGNGAAAFDVEY 197
           RKSRLRKKAYVQQLE+SRLKLTQLEQELQRARQQG+FISSSGDQ+HS +G+GA AFDVEY
Sbjct: 59  RKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISSSGDQAHSTAGDGAMAFDVEY 118

Query: 198 SRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGM 257
            RW E+ NR + EL +A++SHA D+ELR IVD V +H++E++R+KG A+K+DVFH+LSGM
Sbjct: 119 RRWQEDKNRQMKELSSAIDSHATDSELRIIVDGVIAHYEELYRIKGNAAKSDVFHLLSGM 178

Query: 258 WKTPAERCFMWIGGFRSSELLKV 280
           WKTPAERCF+W+GGFRSSELLK+
Sbjct: 179 WKTPAERCFLWLGGFRSSELLKL 201

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX27|PAN_ARATH Transcription factor PERIANTHIA OS=Arabidopsis thaliana GN=PAN PE=1 SV=1

 Score =  248 bits (633), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/180 (65%), Positives = 144/180 (80%), Gaps = 2/180 (1%)

Query: 103 GQLTAVAASDSSDKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLE 162
           G    + A++ SD+S  KS DQ+TLRRLAQNREAARKSRLRKKAYVQQLE+SR++L QLE
Sbjct: 144 GHQGMLLATNCSDQSNVKSSDQRTLRRLAQNREAARKSRLRKKAYVQQLENSRIRLAQLE 203

Query: 163 QELQRARQQGIFISS--SGDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAG 220
           +EL+RARQQG  +    S D +H  +GNG  +F++EY+RW EEH R I +LR+ VNS  G
Sbjct: 204 EELKRARQQGSLVERGVSADHTHLAAGNGVFSFELEYTRWKEEHQRMINDLRSGVNSQLG 263

Query: 221 DTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           D +LR +VD V SH+DEIFRLKGI +K DVFH+LSGMWKTPAER FMW+GGFRSSELLK+
Sbjct: 264 DNDLRVLVDAVMSHYDEIFRLKGIGTKVDVFHMLSGMWKTPAERFFMWLGGFRSSELLKI 323

Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39234|TGA3_ARATH Transcription factor TGA3 OS=Arabidopsis thaliana GN=TGA3 PE=1 SV=1

 Score =  203 bits (517), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 101/174 (58%), Positives = 132/174 (75%), Gaps = 5/174 (2%)

Query: 111 SDSSDKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQ 170
           S ++D+ +++  D K  RRLAQNREAARKSRLRKKA+VQQLE SRLKL+QLEQEL RARQ
Sbjct: 85  SSNNDQDEDRIND-KMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELVRARQ 143

Query: 171 QGIFISSSGDQSH-SMSGN---GAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRT 226
           QG+ + +S D S+   +GN   G AAF++EY+ WLEE NR + E+R A+ +H GD EL+ 
Sbjct: 144 QGLCVRNSSDTSYLGPAGNMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQAHIGDIELKM 203

Query: 227 IVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           +VD+  +H+  +FR+K  A+KADVF ++SGMW+T  ER F WIGGFR SELL V
Sbjct: 204 LVDSCLNHYANLFRMKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSELLNV 257

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Required to induce the systemic acquired resistance (SAR) via the regulation of pathogenesis-related genes expression. Binding to the as-1 element of PR-1 promoter is salicylic acid-inducible and mediated by NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P14232|TGA1A_TOBAC TGACG-sequence-specific DNA-binding protein TGA-1A OS=Nicotiana tabacum GN=TGA1A PE=1 SV=1

 Score =  202 bits (514), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 101/161 (62%), Positives = 123/161 (76%), Gaps = 4/161 (2%)

Query: 124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSH 183
           +K LRRLAQNREAARKSRLRKKAYVQQLE+S+LKL QLEQEL+RAR+QG+ +    D S 
Sbjct: 73  EKVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQLEQELERARKQGMCVGGGVDASQ 132

Query: 184 -SMSG---NGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIF 239
            S SG   +G A FD+EY  W+EE  R   +LR A++S  G+ ELR IVD   +H+ ++F
Sbjct: 133 LSYSGTASSGTAVFDMEYGHWVEEQTRQTNDLRIALHSQIGEAELRIIVDGYLNHYFDLF 192

Query: 240 RLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           R+K  A+KADV +I+SGMWKT AER FMWIGGFR SELLKV
Sbjct: 193 RMKATAAKADVLYIMSGMWKTSAERFFMWIGGFRPSELLKV 233

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Nicotiana tabacum (taxid: 4097)

>sp|Q39237|TGA1_ARATH Transcription factor TGA1 OS=Arabidopsis thaliana GN=TGA1 PE=1 SV=2

 Score =  201 bits (511), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 99/161 (61%), Positives = 122/161 (75%), Gaps = 6/161 (3%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ--- 181
           K  RRLAQNREAARKSRLRKKAYVQQLE+SRLKL QLEQEL RARQQG ++ +  D    
Sbjct: 84  KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQLEQELDRARQQGFYVGNGIDTNSL 143

Query: 182 --SHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIF 239
             S +M+  G AAF++EY  W+EE NR I ELR  ++ H  D ELR++V+N   H+ E+F
Sbjct: 144 GFSETMNP-GIAAFEMEYGHWVEEQNRQICELRTVLHGHINDIELRSLVENAMKHYFELF 202

Query: 240 RLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           R+K  A+KADVF ++SGMW+T AER F+WIGGFR S+LLKV
Sbjct: 203 RMKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPSDLLKV 243

Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
224139726	463	predicted protein [Populus trichocarpa]	0.906	0.604	0.832	1e-130
388522283	461	unknown [Lotus japonicus]	0.928	0.622	0.720	1e-120
357509409	452	TGA transcription factor [Medicago trunc	0.932	0.637	0.717	1e-118
357509411	395	TGA transcription factor [Medicago trunc	0.919	0.718	0.720	1e-117
359482245	451	PREDICTED: TGACG-sequence-specific DNA-b	0.912	0.625	0.715	1e-114
449437717	470	PREDICTED: TGACG-sequence-specific DNA-b	0.893	0.587	0.748	1e-114
15148926	460	TGA-type basic leucine zipper protein TG	0.873	0.586	0.764	1e-113
449506021	471	PREDICTED: LOW QUALITY PROTEIN: TGACG-se	0.893	0.585	0.745	1e-112
255543929	463	Transcription factor HBP-1b(c1), putativ	0.902	0.602	0.730	1e-112
359487138	469	PREDICTED: transcription factor HBP-1b(c	0.902	0.594	0.726	1e-111

>gi|224139726|ref|XP_002323247.1| predicted protein [Populus trichocarpa] gi|222867877|gb|EEF05008.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 233/280 (83%), Positives = 258/280 (92%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQ 60
           +E+AVDLSRN +F+Q+K+  QA+GTDVQFGTL+K LASSDINLS+ +VGSQS+PLQKE Q
Sbjct: 54  IEDAVDLSRNPLFHQLKSSGQAIGTDVQFGTLNKPLASSDINLSAAVVGSQSLPLQKEVQ 113

Query: 61  SNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEK 120
            N +S+   H ENWGE++MAEASP TDTSTDDT+DKNQRFERGQ TA+ ASDSSDKSKEK
Sbjct: 114 VNPVSIPGNHPENWGETSMAEASPRTDTSTDDTDDKNQRFERGQSTAIVASDSSDKSKEK 173

Query: 121 SGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD 180
           +GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD
Sbjct: 174 AGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD 233

Query: 181 QSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
           Q+HSMSGNGA AFD EYSRWLEE NRHI ELRAAVNSHAGDTEL TIVDNV +HF+E++R
Sbjct: 234 QTHSMSGNGALAFDAEYSRWLEEQNRHISELRAAVNSHAGDTELHTIVDNVVAHFNEVYR 293

Query: 241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           LKG A+KADVFHILSGMWKTPAERCFMWIGGFRSSELLK+
Sbjct: 294 LKGTAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKL 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522283|gb|AFK49203.1| unknown [Lotus japonicus]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 217/301 (72%), Positives = 249/301 (82%), Gaps = 14/301 (4%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQ 60
           +E+ ++LSRN VF QMK+ +QA+G D+QFG LSK++A+SD NLS+ I GSQ MPLQK+ Q
Sbjct: 64  IEDTMNLSRNPVFNQMKSNSQALGADIQFGALSKSIATSDNNLSAAIAGSQMMPLQKDSQ 123

Query: 61  SNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEK 120
            NL S S GHRENWGESN  +ASP   TSTDDT+DKNQ  ERG        +SSD+SK+K
Sbjct: 124 PNLASTSGGHRENWGESNTGDASP---TSTDDTDDKNQMVERG--------ESSDRSKDK 172

Query: 121 SGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD 180
           + DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISS+G+
Sbjct: 173 T-DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGE 231

Query: 181 QSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
           Q+HSMSGNGA AFDVEY+RWLEEHNRH  ELRAA+NSHAGD ELRTIVDN  + FD++FR
Sbjct: 232 QAHSMSGNGAIAFDVEYARWLEEHNRHTNELRAAINSHAGDIELRTIVDNFMTQFDDLFR 291

Query: 241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWLLFFFYF 300
           LKGIA+KADVFHILSGMWKTPAERCFMWIGGFRSSE+LK+  L+  + P     L   Y 
Sbjct: 292 LKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSEILKL--LVNQLEPLTEQQLMGIYN 349

Query: 301 L 301
           L
Sbjct: 350 L 350

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509409|ref|XP_003624993.1| TGA transcription factor [Medicago truncatula] gi|355500008|gb|AES81211.1| TGA transcription factor [Medicago truncatula]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/301 (71%), Positives = 248/301 (82%), Gaps = 13/301 (4%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQ 60
           +E+A++LSRN VF QMK  +QA+G D+QFG LSK++A+SDINLS+ I GSQ++ LQK+  
Sbjct: 54  VEDAMNLSRNPVFNQMKANSQALGADIQFGALSKSIANSDINLSAAIAGSQTLQLQKDAM 113

Query: 61  SNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEK 120
            NL S S GHRENWGESNMAE S   DTSTDDTEDKNQ  ERG        +SS++SK+K
Sbjct: 114 PNLASTSGGHRENWGESNMAEGS--ADTSTDDTEDKNQMPERG--------ESSERSKDK 163

Query: 121 SGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD 180
           S DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISS+G+
Sbjct: 164 S-DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGE 222

Query: 181 QSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
           Q+HSMSGNGA AFD EY+RWLEEHNR   ELRAA+NSHAGD ELRTIVDN  + F++I+R
Sbjct: 223 QTHSMSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYR 282

Query: 241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWLLFFFYF 300
           LKG+A+KADVFHILSGMWKTPAERCFMWIGGFRSSELLK+  L+  + P     L   Y 
Sbjct: 283 LKGVAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKL--LVSHLEPLTEQQLMGIYN 340

Query: 301 L 301
           L
Sbjct: 341 L 341

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509411|ref|XP_003624994.1| TGA transcription factor [Medicago truncatula] gi|355500009|gb|AES81212.1| TGA transcription factor [Medicago truncatula]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/297 (72%), Positives = 244/297 (82%), Gaps = 13/297 (4%)

Query: 5   VDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQSNLI 64
           ++LSRN VF QMK  +QA+G D+QFG LSK++A+SDINLS+ I GSQ++ LQK+   NL 
Sbjct: 1   MNLSRNPVFNQMKANSQALGADIQFGALSKSIANSDINLSAAIAGSQTLQLQKDAMPNLA 60

Query: 65  SVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSGDQ 124
           S S GHRENWGESNMAE S   DTSTDDTEDKNQ  ERG        +SS++SK+KS DQ
Sbjct: 61  STSGGHRENWGESNMAEGS--ADTSTDDTEDKNQMPERG--------ESSERSKDKS-DQ 109

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHS 184
           KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISS+G+Q+HS
Sbjct: 110 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGEQTHS 169

Query: 185 MSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGI 244
           MSGNGA AFD EY+RWLEEHNR   ELRAA+NSHAGD ELRTIVDN  + F++I+RLKG+
Sbjct: 170 MSGNGAMAFDAEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMTQFEDIYRLKGV 229

Query: 245 ASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWLLFFFYFL 301
           A+KADVFHILSGMWKTPAERCFMWIGGFRSSELLK+  L+  + P     L   Y L
Sbjct: 230 AAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKL--LVSHLEPLTEQQLMGIYNL 284

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482245|ref|XP_003632741.1| PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Vitis vinifera] gi|297739945|emb|CBI30127.3| unnamed protein product [Vitis vinifera]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/302 (71%), Positives = 242/302 (80%), Gaps = 20/302 (6%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQ 60
           +E+AVDLSRNSVF   K  +QA  TD+QFG L+KT                   +QKE Q
Sbjct: 58  IEDAVDLSRNSVFNSAKPSSQAPSTDLQFGALNKT-----------------STVQKELQ 100

Query: 61  SNLISVSSGHRENWGESNMAEASP-ITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKE 119
            N+ SVS  HRENWGESNMA+ASP    ++  DT++KNQRFE GQ  A+ ASDSSD+SKE
Sbjct: 101 QNIASVSGSHRENWGESNMADASPRTDTSTDVDTDEKNQRFEMGQSAALVASDSSDRSKE 160

Query: 120 KSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSG 179
           K+GDQKTLRRLAQNREAARKSRLRKKAYVQQLE+SR+KLTQLEQELQRARQQGIFISSSG
Sbjct: 161 KAGDQKTLRRLAQNREAARKSRLRKKAYVQQLENSRMKLTQLEQELQRARQQGIFISSSG 220

Query: 180 DQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIF 239
           DQSHSMSGNGA AFDVEY+RWLEEHNR I ELR+AVNSHA DTELRTIVDNVT+HFD+IF
Sbjct: 221 DQSHSMSGNGALAFDVEYARWLEEHNRQINELRSAVNSHASDTELRTIVDNVTAHFDDIF 280

Query: 240 RLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLLIAIVPTGIWLLFFFY 299
           RLKGIA+KADVFHILSGMWKTPAERCFMWIGGFRSSE+LK+  L+  + P     L   Y
Sbjct: 281 RLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSEVLKL--LVNQLEPLTEQQLMSIY 338

Query: 300 FL 301
            L
Sbjct: 339 NL 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437717|ref|XP_004136637.1| PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Cucumis sativus]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/278 (74%), Positives = 247/278 (88%), Gaps = 2/278 (0%)

Query: 5   VDLSRNSVFYQMKTGNQAVGTDVQFGTLS--KTLASSDINLSSHIVGSQSMPLQKEPQSN 62
           VDL+RN ++ Q+K+ +  +  ++QFG+L+  + LAS+D+NL + ++GSQ++PLQKE  +N
Sbjct: 63  VDLTRNPLYNQIKSNSSTMNNNIQFGSLNGIQPLASTDVNLPTAVMGSQTLPLQKESNAN 122

Query: 63  LISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSG 122
           L+S S G RENWGESNMA+ S  TDTSTDDT+DK+QR ++ Q  ++A  DSS+KSKEK+ 
Sbjct: 123 LVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAVYDSSNKSKEKTA 182

Query: 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQS 182
           DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFIS+SGDQ+
Sbjct: 183 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQA 242

Query: 183 HSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLK 242
           HSMSGNGA AFDVEYSRWLEEHNR + ELRAAVNSHAGDTELRTIVDNVT+ FD+IFRLK
Sbjct: 243 HSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRLK 302

Query: 243 GIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           GIA+KADVFHILSGMWKTPAERCF+WIGGFRSSE+LK+
Sbjct: 303 GIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKL 340

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15148926|gb|AAK84890.1|AF402609_1 TGA-type basic leucine zipper protein TGA2.2 [Phaseolus vulgaris]

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/280 (76%), Positives = 244/280 (87%), Gaps = 10/280 (3%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTDVQFGTLSKTLASSDINLSSHIVGSQSMPLQKEPQ 60
           +E+ ++LSRN VF QMK+ +QA+G D+QFG L+K++ +SDINLS+ I GSQ++ LQK+ Q
Sbjct: 61  VEDTINLSRNPVFSQMKSNSQALGADIQFGALNKSIVTSDINLSAAIAGSQTLALQKDAQ 120

Query: 61  SNLISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEK 120
             L S +SGHRENWGE+NMA+ASP TDTSTDDTEDKNQ  ERG        +SSD+SK+K
Sbjct: 121 PTLAS-TSGHRENWGETNMADASPRTDTSTDDTEDKNQLPERG--------ESSDRSKDK 171

Query: 121 SGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGD 180
           S DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISS+GD
Sbjct: 172 S-DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSTGD 230

Query: 181 QSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
           Q+ SMSGNGA AFDVEY+RWLEEHNR   ELRAA+NSHAGD ELRTIVDN  + FD+IFR
Sbjct: 231 QAQSMSGNGAMAFDVEYARWLEEHNRQTNELRAAINSHAGDIELRTIVDNFMAQFDDIFR 290

Query: 241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           LKGIA+KADVFHILSGMWKTPAERCFMWIGGFRSSELLK+
Sbjct: 291 LKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKL 330

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506021|ref|XP_004162630.1| PREDICTED: LOW QUALITY PROTEIN: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Cucumis sativus]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/279 (74%), Positives = 247/279 (88%), Gaps = 3/279 (1%)

Query: 5   VDLSRNSVFYQMKTGNQAVGTDVQFGTLS--KTLASSDINLSSHIVGSQSMPLQKEPQSN 62
           VDL+RN ++ Q+K+ +  +  ++QFG+L+  + LAS+D+NL + ++GSQ++PLQKE  +N
Sbjct: 63  VDLTRNPLYNQIKSNSSTMNNNIQFGSLNGIQPLASTDVNLPTAVMGSQTLPLQKESNAN 122

Query: 63  LISVSSGHRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAASDSSDKSKEKSG 122
           L+S S G RENWGESNMA+ S  TDTSTDDT+DK+QR ++ Q  ++A  DSS+KSKEK+ 
Sbjct: 123 LVSTSGGPRENWGESNMADTSTRTDTSTDDTDDKSQRLDKDQGNSLAVYDSSNKSKEKTA 182

Query: 123 DQKTLRRLAQNREAARKSRLRKK-AYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQ 181
           DQKTLRRLAQNREAARKSRLRKK AYVQQLESSRLKLTQLEQELQRARQQGIFIS+SGDQ
Sbjct: 183 DQKTLRRLAQNREAARKSRLRKKXAYVQQLESSRLKLTQLEQELQRARQQGIFISNSGDQ 242

Query: 182 SHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRL 241
           +HSMSGNGA AFDVEYSRWLEEHNR + ELRAAVNSHAGDTELRTIVDNVT+ FD+IFRL
Sbjct: 243 AHSMSGNGALAFDVEYSRWLEEHNRLMNELRAAVNSHAGDTELRTIVDNVTTQFDDIFRL 302

Query: 242 KGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           KGIA+KADVFHILSGMWKTPAERCF+WIGGFRSSE+LK+
Sbjct: 303 KGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKL 341

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543929|ref|XP_002513027.1| Transcription factor HBP-1b(c1), putative [Ricinus communis] gi|223548038|gb|EEF49530.1| Transcription factor HBP-1b(c1), putative [Ricinus communis]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/282 (73%), Positives = 237/282 (84%), Gaps = 3/282 (1%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTD-VQFGTLSKTLASSDINLSSHIVGSQSMPLQKEP 59
           +E+AVDLS N+VF   K  NQA  +D +  G+  K  AS +IN S   + SQ +PL+K  
Sbjct: 53  LEDAVDLSTNTVFNSAKANNQADTSDPLHIGSFDKLTASFNINPSPAQLESQRLPLEKGQ 112

Query: 60  QSNLISVSSGHRENWGESNMAEASPITDTSTD-DTEDKNQRFERGQLTAVAASDSSDKSK 118
           Q N+I++SSG+ ENW ESNMA+ SP TD STD DT+DKNQRF+RG  TA+AASDSSD+SK
Sbjct: 113 QLNIIALSSGNTENWEESNMADGSPRTDLSTDGDTDDKNQRFDRGLSTAIAASDSSDRSK 172

Query: 119 EKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSS 178
           +K  DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSS
Sbjct: 173 DKM-DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSS 231

Query: 179 GDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEI 238
           GDQ+HSMSGNGA AFDVEY+RWLEE NR I ELR+AVNSHAGD ELR I+D V +H+DEI
Sbjct: 232 GDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHAGDAELRIIIDGVMAHYDEI 291

Query: 239 FRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           FRLK  A+KADVFH+LSGMWKTPAERCF+W+GGFRSSELLK+
Sbjct: 292 FRLKSNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKL 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487138|ref|XP_002263159.2| PREDICTED: transcription factor HBP-1b(c1)-like [Vitis vinifera] gi|296087850|emb|CBI35106.3| unnamed protein product [Vitis vinifera]

 Score =  406 bits (1043), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/282 (72%), Positives = 237/282 (84%), Gaps = 3/282 (1%)

Query: 1   MENAVDLSRNSVFYQMKTGNQAVGTD-VQFGTLSKTLASSDINLSSHIVGSQSMPLQKEP 59
           +E+AVDLS ++ F   K   +AV +D +   T  K+  S DIN S+  V SQ +PLQK  
Sbjct: 59  LEDAVDLSGSTAFNSTKPSGRAVTSDPLHSVTFDKSQNSFDINPSAARVESQRLPLQKGQ 118

Query: 60  QSNLISVSSGHRENWGESNMAEASPITDTSTD-DTEDKNQRFERGQLTAVAASDSSDKSK 118
           QSNL+S+SSG  ENWGES MA+ASP TD STD DT+DK QRFERGQ  +  ASDSSD+SK
Sbjct: 119 QSNLVSISSGSVENWGESAMADASPRTDISTDVDTDDKVQRFERGQPASNMASDSSDRSK 178

Query: 119 EKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSS 178
           +K+ DQKTLRRLAQNREAARKSRLRKKAYVQQLESSR+KLTQLEQELQRARQQGIFISSS
Sbjct: 179 DKN-DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISSS 237

Query: 179 GDQSHSMSGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEI 238
           GDQ+HSMSGNGA AFDVEY+RWLEE NR I ELR+AVNSHA D ELR IVDN+ +H+D+I
Sbjct: 238 GDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHASDAELRVIVDNIMAHYDDI 297

Query: 239 FRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
           FRLKG+A+KADVFH+LSGMWKTPAERCF+W+GGFRSSELLK+
Sbjct: 298 FRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKL 339

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
UNIPROTKB|Q9SQK1	325	TGA2.2 "BZIP transcription fac	0.631	0.6	0.645	1.5e-60
TAIR|locus:2169394	330	AHBP-1B "AT5G06950" [Arabidops	0.650	0.609	0.589	2.8e-57
TAIR|locus:2082234	355	TGA6 "AT3G12250" [Arabidopsis	0.576	0.501	0.611	1.4e-56
TAIR|locus:2169409	330	OBF5 "AT5G06960" [Arabidopsis	0.647	0.606	0.566	1.4e-55
TAIR|locus:2026890	452	PAN "AT1G68640" [Arabidopsis t	0.656	0.449	0.550	3.5e-52
TAIR|locus:2199968	481	TGA9 "AT1G08320" [Arabidopsis	0.501	0.322	0.570	3.1e-44
TAIR|locus:2171820	368	TGA1 "AT5G65210" [Arabidopsis	0.504	0.423	0.537	8.7e-40
TAIR|locus:2184078	364	TGA4 "AT5G10030" [Arabidopsis	0.504	0.428	0.518	4.8e-39
TAIR|locus:2030551	384	TGA3 "AT1G22070" [Arabidopsis	0.504	0.406	0.525	9.9e-39
TAIR|locus:2029366	368	TGA7 "AT1G77920" [Arabidopsis	0.660	0.554	0.417	3e-37

UNIPROTKB|Q9SQK1 TGA2.2 "BZIP transcription factor" [Nicotiana tabacum (taxid:4097)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 131/203 (64%), Positives = 146/203 (71%)

Query:    79 MAEASPITDTSTD-DTEDKNQRFERGQLTAVAAXXXXXXXXXXXXXQKTLRRLAQNREAA 137
             MA+ SP   TSTD DTEDKN+     QL AVA+             QKTLRRLAQNREAA
Sbjct:     1 MADISP--STSTDADTEDKNRFLNSQQLGAVASDGSDRTRD-----QKTLRRLAQNREAA 53

Query:   138 RKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXXXXGNGAAAFDVEY 197
             RKSRLRKKAYVQQLESSR+KLT            GIFI           GNGA AFDVEY
Sbjct:    54 RKSRLRKKAYVQQLESSRMKLTQLEQELQRARQQGIFISGSGDQSQSMSGNGALAFDVEY 113

Query:   198 SRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGM 257
             +RWLEE NR I ELR AVNSHAGD ELR IVD + +H+D+IFR+KG A+K+DVFHILSGM
Sbjct:   114 ARWLEEQNRRINELRGAVNSHAGDGELRIIVDGILAHYDDIFRIKGDAAKSDVFHILSGM 173

Query:   258 WKTPAERCFMWIGGFRSSELLKV 280
             WKTPAERCF+W+GGFRSSELLK+
Sbjct:   174 WKTPAERCFLWLGGFRSSELLKL 196

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2169394 AHBP-1B "AT5G06950" [Arabidopsis thaliana (taxid:3702)]

 Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
 Identities = 119/202 (58%), Positives = 139/202 (68%)

Query:    79 MAEASPITDTSTDDTEDKNQRFERGQLTAVAAXXXXXXXXXXXXXQKTLRRLAQNREAAR 138
             MA+ SP TD STDD  D       G L   AA             QKTLRRLAQNREAAR
Sbjct:     1 MADTSPRTDVSTDDDTDHPDLGSEGALVNTAASDSSDRSKGKMD-QKTLRRLAQNREAAR 59

Query:   139 KSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXXXXGNGAAAFDVEYS 198
             KSRLRKKAYVQQLE+SRLKLT            G+FI           GNGA AFD E+S
Sbjct:    60 KSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISGTGDQAHSTGGNGALAFDAEHS 119

Query:   199 RWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMW 258
             RWLEE N+ + ELR+A+N+HAGD+ELR IVD V +H++E+FR+K  A+K DVFH+LSGMW
Sbjct:   120 RWLEEKNKQMNELRSALNAHAGDSELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMW 179

Query:   259 KTPAERCFMWIGGFRSSELLKV 280
             KTPAERCF+W+GGFRSSELLK+
Sbjct:   180 KTPAERCFLWLGGFRSSELLKL 201

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IGI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

TAIR|locus:2082234 TGA6 "AT3G12250" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
 Identities = 110/180 (61%), Positives = 130/180 (72%)

Query:   101 ERGQLTAVAAXXXXXXXXXXXXXQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTX 160
             +RG + A A+             QKTLRRLAQNREAARKSRLRKKAYVQQLE+SRLKLT 
Sbjct:    49 DRGHMHAAASDSSDRSKDKLD--QKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQ 106

Query:   161 XXXXXXXXXXXGIFIXXXXXXXXXXXGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAG 220
                        G+FI           GNGA AFD E+SRWLEE NR + ELR+A+N+HAG
Sbjct:   107 LEQELQRARQQGVFISSSGDQAHSTGGNGALAFDAEHSRWLEEKNRQMNELRSALNAHAG 166

Query:   221 DTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
             DTELR IVD V +H++E+FR+K  A+K DVFH+LSGMWKTPAERCF+W+GGFRSSELLK+
Sbjct:   167 DTELRIIVDGVMAHYEELFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGGFRSSELLKL 226

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009627 "systemic acquired resistance" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2169409 OBF5 "AT5G06960" [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 115/203 (56%), Positives = 140/203 (68%)

Query:    79 MAEASPITDTSTD-DTEDKNQRFERGQLTAVAAXXXXXXXXXXXXXQKTLRRLAQNREAA 137
             M + SP T  STD DT+  N  F+ G L  + A             QKTLRRLAQNREAA
Sbjct:     1 MGDTSPRTSVSTDGDTDHNNLMFDEGHL-GIGASDSSDRSKSKMD-QKTLRRLAQNREAA 58

Query:   138 RKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXXXXGNGAAAFDVEY 197
             RKSRLRKKAYVQQLE+SRLKLT            G+FI           G+GA AFDVEY
Sbjct:    59 RKSRLRKKAYVQQLENSRLKLTQLEQELQRARQQGVFISSSGDQAHSTAGDGAMAFDVEY 118

Query:   198 SRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGM 257
              RW E+ NR + EL +A++SHA D+ELR IVD V +H++E++R+KG A+K+DVFH+LSGM
Sbjct:   119 RRWQEDKNRQMKELSSAIDSHATDSELRIIVDGVIAHYEELYRIKGNAAKSDVFHLLSGM 178

Query:   258 WKTPAERCFMWIGGFRSSELLKV 280
             WKTPAERCF+W+GGFRSSELLK+
Sbjct:   179 WKTPAERCFLWLGGFRSSELLKL 201

GO:0003677 "DNA binding" evidence=ISS;IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=IGI;RCA

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=TAS

TAIR|locus:2026890 PAN "AT1G68640" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 114/207 (55%), Positives = 135/207 (65%)

Query:    77 SNMAEASPITDTSTD-DTEDKNQRFERGQLTAVAAXXXXXXXXXXXXXQKTLRRLAQNRE 135
             S MA+ S  TDTSTD DT+DK Q    G    + A             Q+TLRRLAQNRE
Sbjct:   118 SAMADNSQHTDTSTDIDTDDKTQ-LNGGHQGMLLATNCSDQSNVKSSDQRTLRRLAQNRE 176

Query:   136 AARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXX--XXGNGAAAF 193
             AARKSRLRKKAYVQQLE+SR++L             G  +             GNG  +F
Sbjct:   177 AARKSRLRKKAYVQQLENSRIRLAQLEEELKRARQQGSLVERGVSADHTHLAAGNGVFSF 236

Query:   194 DVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHI 253
             ++EY+RW EEH R I +LR+ VNS  GD +LR +VD V SH+DEIFRLKGI +K DVFH+
Sbjct:   237 ELEYTRWKEEHQRMINDLRSGVNSQLGDNDLRVLVDAVMSHYDEIFRLKGIGTKVDVFHM 296

Query:   254 LSGMWKTPAERCFMWIGGFRSSELLKV 280
             LSGMWKTPAER FMW+GGFRSSELLK+
Sbjct:   297 LSGMWKTPAERFFMWLGGFRSSELLKI 323

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2199968 TGA9 "AT1G08320" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 89/156 (57%), Positives = 112/156 (71%)

Query:   125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXX 184
             KTLRRLAQNREAARKSRLRKKAYVQQLESSR+KL+            G+F+         
Sbjct:   178 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQELQRARSQGLFMGGCGPPGPN 237

Query:   185 XXGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGI 244
                +GAA FD+EY RWLE+ NRH+ E+R  + +H  D +LR IVD   +HFDEIFRLK +
Sbjct:   238 IT-SGAAIFDMEYGRWLEDDNRHMSEIRTGLQAHLSDNDLRLIVDGYIAHFDEIFRLKAV 296

Query:   245 ASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
             A+KADVFH++ G W +PAERCF+W+ GFR S+L+K+
Sbjct:   297 AAKADVFHLIIGTWMSPAERCFIWMAGFRPSDLIKI 332

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2171820 TGA1 "AT5G65210" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 86/160 (53%), Positives = 105/160 (65%)

Query:   125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIF----IXXXXX 180
             K  RRLAQNREAARKSRLRKKAYVQQLE+SRLKL             G +    I     
Sbjct:    84 KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIQLEQELDRARQQGFYVGNGIDTNSL 143

Query:   181 XXXXXXGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
                     G AAF++EY  W+EE NR I ELR  ++ H  D ELR++V+N   H+ E+FR
Sbjct:   144 GFSETMNPGIAAFEMEYGHWVEEQNRQICELRTVLHGHINDIELRSLVENAMKHYFELFR 203

Query:   241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
             +K  A+KADVF ++SGMW+T AER F+WIGGFR S+LLKV
Sbjct:   204 MKSSAAKADVFFVMSGMWRTSAERFFLWIGGFRPSDLLKV 243

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003677 "DNA binding" evidence=TAS

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2184078 TGA4 "AT5G10030" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 83/160 (51%), Positives = 104/160 (65%)

Query:   125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIX----XXXX 180
             K  RRLAQNREAARKSRLRKKAYVQQLE+SRLKL             G ++         
Sbjct:    80 KIQRRLAQNREAARKSRLRKKAYVQQLETSRLKLIHLEQELDRARQQGFYVGNGVDTNAL 139

Query:   181 XXXXXXGNGAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
                    +G  AF++EY  W+EE NR I ELR  ++    D ELR++V+N   H+ ++FR
Sbjct:   140 SFSDNMSSGIVAFEMEYGHWVEEQNRQICELRTVLHGQVSDIELRSLVENAMKHYFQLFR 199

Query:   241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
             +K  A+K DVF+++SGMWKT AER F+WIGGFR SELLKV
Sbjct:   200 MKSAAAKIDVFYVMSGMWKTSAERFFLWIGGFRPSELLKV 239

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0003677 "DNA binding" evidence=TAS

TAIR|locus:2030551 TGA3 "AT1G22070" [Arabidopsis thaliana (taxid:3702)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 84/160 (52%), Positives = 106/160 (66%)

Query:   125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXX 184
             K  RRLAQNREAARKSRLRKKA+VQQLE SRLKL+            G+ +         
Sbjct:    98 KMKRRLAQNREAARKSRLRKKAHVQQLEESRLKLSQLEQELVRARQQGLCVRNSSDTSYL 157

Query:   185 X-XGN---GAAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFR 240
                GN   G AAF++EY+ WLEE NR + E+R A+ +H GD EL+ +VD+  +H+  +FR
Sbjct:   158 GPAGNMNSGIAAFEMEYTHWLEEQNRRVSEIRTALQAHIGDIELKMLVDSCLNHYANLFR 217

Query:   241 LKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
             +K  A+KADVF ++SGMW+T  ER F WIGGFR SELL V
Sbjct:   218 MKADAAKADVFFLMSGMWRTSTERFFQWIGGFRPSELLNV 257

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA;IPI

GO:0005516 "calmodulin binding" evidence=IDA;TAS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0003677 "DNA binding" evidence=IDA

TAIR|locus:2029366 TGA7 "AT1G77920" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 88/211 (41%), Positives = 117/211 (55%)

Query:    70 HRENWGESNMAEASPITDTSTDDTEDKNQRFERGQLTAVAAXXXXXXXXXXXXXQKTLRR 129
             H  N   S++ +  P  D   ++ +  N      Q+ A                 K  RR
Sbjct:    39 HSPNTATSSIIQVDPRIDDHNNNIKI-NYDSSHNQIEAEQPSSNDNQDDDGRIHDKMKRR 97

Query:   130 LAQNREAARKSRLRKKAYVQQLESSRLKLTXXXXXXXXXXXXGIFIXXXXXXXXXXXGNG 189
             LAQNREAARKSRLRKKAYVQQLE SRLKL+            G                G
Sbjct:    98 LAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQELEKVKQQG------HLGPSGSINTG 151

Query:   190 AAAFDVEYSRWLEEHNRHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKAD 249
              A+F++EYS WL+E +R + ELR A+ SH  D EL+ +V++  +H+  +F++K  A+KAD
Sbjct:   152 IASFEMEYSHWLQEQSRRVSELRTALQSHISDIELKMLVESCLNHYANLFQMKSDAAKAD 211

Query:   250 VFHILSGMWKTPAERCFMWIGGFRSSELLKV 280
             VF+++SGMW+T  ER F WIGGFR SELL V
Sbjct:   212 VFYLISGMWRTSTERFFQWIGGFRPSELLNV 242

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23923	HBP1B_WHEAT	No assigned EC number	0.7772	0.6504	0.6054	N/A	no
Q39140	TGA6_ARATH	No assigned EC number	0.7389	0.6472	0.6060	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVI0272 hypothetical protein (463 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
pfam14144	79	pfam14144, DOG1, Seed dormancy control	2e-40
smart00338	65	smart00338, BRLZ, basic region leucin zipper	7e-11
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	8e-08
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	1e-06
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	1e-04

>gnl|CDD|206313 pfam14144, DOG1, Seed dormancy control

 Score =  135 bits (342), Expect = 2e-40
 Identities = 54/75 (72%), Positives = 65/75 (86%)

Query: 206 RHIVELRAAVNSHAGDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERC 265
           R + ELRAA+N+HA D ELR++VD V +H+DE FRLK  A+KADVFH+LSGMWKTPAERC
Sbjct: 1   RLLAELRAALNAHASDDELRSLVDKVLAHYDEYFRLKSAAAKADVFHLLSGMWKTPAERC 60

Query: 266 FMWIGGFRSSELLKV 280
           F+WIGGFR SELLK+
Sbjct: 61  FLWIGGFRPSELLKL 75

This family of plant proteins appears to be a highly specific controller seed dormancy. Length = 79

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 56.8 bits (138), Expect = 7e-11
 Identities = 20/45 (44%), Positives = 30/45 (66%)

Query: 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 167
           D+K  RR  +NREAAR+SR RKKA +++LE    +L    + L++
Sbjct: 3   DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKK 47

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 19/28 (67%), Positives = 24/28 (85%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLE 152
           K  RR  +NREAAR+SRLRKKAY+++LE
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELE 32

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           D+   RR  +N EAAR+SR +KK   ++LE    ++ +LE+E  + RQ+
Sbjct: 3   DEYRDRRR-RNNEAARRSREKKKQREEELEE---RVKELEEENAQLRQK 47

Length = 54

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ----LEQELQRARQQ 171
              R+ A+NREAAR+SR RK   ++QLE    +LT     LE E+ R ++ 
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKKA 52

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
PF14144	80	DOG1: Seed dormancy control	100.0
smart00338	65	BRLZ basic region leucin zipper.	98.69
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	98.6
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	98.47
KOG3584	348	consensus cAMP response element binding protein an	97.66
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	96.3
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	95.05
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	94.5
KOG0837	279	consensus Transcriptional activator of the JUN fam	93.02
KOG4571	294	consensus Activating transcription factor 4 [Trans	84.19
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	80.56

>PF14144 DOG1: Seed dormancy control

Probab=100.00  E-value=9e-37  Score=239.43  Aligned_cols=79  Identities=59%  Similarity=1.019  Sum_probs=76.7

Q ss_pred             hhHHHHHHHhhcCC-CChhHHHHHHHHHHhHHHHHHHHhhhhcccchhhccCCCCChHHHHHHHhcCCCchhHHHHHHHh
Q 021676          206 RHIVELRAAVNSHA-GDTELRTIVDNVTSHFDEIFRLKGIASKADVFHILSGMWKTPAERCFMWIGGFRSSELLKVSRLL  284 (309)
Q Consensus       206 r~i~ELRaAL~ah~-~D~eLr~LVdkvmsHY~eyfrlKs~AAkaDVfhv~SG~WkTPlER~FLWIGGFRPSeLlkLL~sL  284 (309)
                      |+|+|||+|+++|. +|++|+.||++||+||++||++|+.||++|||++|+|+|+||+|||||||||||||++|||||+.
T Consensus         1 ~~l~eLr~al~~~~~~~~~L~~lV~~~~~Hy~~y~~~K~~aa~~DV~~~~s~~W~sp~Er~flWiGG~RPS~~~~ll~s~   80 (80)
T PF14144_consen    1 RQLNELRAALQSHADSDDELRSLVDKVMSHYDEYYRAKSAAAKADVFHLLSPPWKSPLERCFLWIGGWRPSELFKLLYSQ   80 (80)
T ss_pred             CcHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHhCCCCCCHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            58999999999998 89999999999999999999999999999999999999999999999999999999999999973

>smart00338 BRLZ basic region leucin zipper

Probab=98.69  E-value=5.2e-08  Score=72.58  Aligned_cols=44  Identities=45%  Similarity=0.570  Sum_probs=37.0

Q ss_pred             cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021676          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ  166 (309)
Q Consensus       123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelq  166 (309)
                      |+|-.||+.+||+||++||.|||+|+++||.....|.....+|.
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~   46 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLK   46 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999986665555444444

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=98.60  E-value=9.5e-08  Score=71.12  Aligned_cols=36  Identities=50%  Similarity=0.700  Sum_probs=30.0

Q ss_pred             cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHH
Q 021676          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL  158 (309)
Q Consensus       123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL  158 (309)
                      ..|..+|+.+||+|||+||.|||+|+++||..--.|
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L   38 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEEL   38 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            356789999999999999999999999999844433

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=98.47  E-value=5e-07  Score=65.69  Aligned_cols=37  Identities=46%  Similarity=0.578  Sum_probs=32.0

Q ss_pred             cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 021676          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ  160 (309)
Q Consensus       123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~q  160 (309)
                      |++..||. .||+||++||-|||.|+++||..-..|.+
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~   39 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEE   39 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67889999 99999999999999999999995544443

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=97.66  E-value=6.3e-05  Score=72.84  Aligned_cols=34  Identities=47%  Similarity=0.580  Sum_probs=29.9

Q ss_pred             cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHH
Q 021676          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRL  156 (309)
Q Consensus       123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~  156 (309)
                      ..|..=||-.||||||.+|-.||-||..||+-..
T Consensus       289 trKRevRLmKNREAARECRRKKKEYVKCLENRVA  322 (348)
T KOG3584|consen  289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVA  322 (348)
T ss_pred             hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHH
Confidence            3467779999999999999999999999999543

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=96.30  E-value=0.0037  Score=49.98  Aligned_cols=35  Identities=34%  Similarity=0.367  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHH
Q 021676          124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL  158 (309)
Q Consensus       124 ~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL  158 (309)
                      -|-.||.-+||.||+.||-||+..+..||.....|
T Consensus        29 lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l   63 (92)
T PF03131_consen   29 LKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQL   63 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999866443

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=95.05  E-value=0.041  Score=57.46  Aligned_cols=42  Identities=43%  Similarity=0.602  Sum_probs=34.1

Q ss_pred             ccHHHHH---HHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021676          122 GDQKTLR---RLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ  166 (309)
Q Consensus       122 ~d~k~lR---RLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelq  166 (309)
                      .|+|+++   |+..|||-|--||-|||-|++-||.   +|..|++|-+
T Consensus       275 ~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~---rLq~ll~Ene  319 (655)
T KOG4343|consen  275 SDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEA---RLQALLSENE  319 (655)
T ss_pred             cCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            4777754   7889999999999999999999998   5555555544

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=94.50  E-value=0.037  Score=56.57  Aligned_cols=34  Identities=38%  Similarity=0.497  Sum_probs=29.9

Q ss_pred             cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHH
Q 021676          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRL  156 (309)
Q Consensus       123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~  156 (309)
                      +=|..||...|.+-|..||-|||-||.+||+-..
T Consensus       249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~  282 (472)
T KOG0709|consen  249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVS  282 (472)
T ss_pred             HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhh
Confidence            3467799999999999999999999999997543

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=93.02  E-value=0.21  Score=48.29  Aligned_cols=29  Identities=45%  Similarity=0.504  Sum_probs=24.1

Q ss_pred             HHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Q 021676          125 KTLRRLAQNREAARKSRLRKKAYVQQLES  153 (309)
Q Consensus       125 k~lRRLAQNREAARKSRlRKKAYvQqLEs  153 (309)
                      |..|.-+.|||||+|||-||=--+.+||.
T Consensus       206 kleRkrlrnreaa~Kcr~rkLdrisrLEd  234 (279)
T KOG0837|consen  206 KLERKRLRNREAASKCRKRKLDRISRLED  234 (279)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            44566678999999999999888888776

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=84.19  E-value=4.1  Score=39.94  Aligned_cols=49  Identities=31%  Similarity=0.401  Sum_probs=38.0

Q ss_pred             ccHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHh-----------HHHHHHHHHHHHHHhh
Q 021676          122 GDQKTLRRLAQNREA-ARKSRLRKKAYVQQLESS-----------RLKLTQLEQELQRARQ  170 (309)
Q Consensus       122 ~d~k~lRRLAQNREA-ARKSRlRKKAYvQqLEss-----------r~kL~qleqelqrarq  170 (309)
                      .+.|++||-+|+|.+ |-+=|-||||=-+.||..           |.++..||.|+++-||
T Consensus       223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq  283 (294)
T KOG4571|consen  223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ  283 (294)
T ss_pred             CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477999998887776 888899999988888653           3456778888887765

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=80.56  E-value=14  Score=35.95  Aligned_cols=52  Identities=37%  Similarity=0.396  Sum_probs=37.9

Q ss_pred             ccHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHH------HHHHHHHHHhhcce
Q 021676          122 GDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLT------QLEQELQRARQQGI  173 (309)
Q Consensus       122 ~d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~------qleqelqrarqQg~  173 (309)
                      ...|++||=-.||-||.-+|=||||-...+|-.-..|.      |+|-++-|+...|+
T Consensus        66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L  123 (292)
T KOG4005|consen   66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESL  123 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999998888886544333      44444445444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	3e-09
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	1e-08
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	2e-08
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	7e-07
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	7e-07
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	9e-07
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	4e-06
2wt7_B	90	Transcription factor MAFB; transcription, transcri	5e-06
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	1e-05
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	4e-05
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	4e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 51.3 bits (123), Expect = 3e-09
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           K   RL +NREAAR+SR +KK YV+ LE+   ++  LE + +   ++
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE 44

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           K  + L +NR AA +SR ++K +VQ LE     L+ L  +LQ     
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTL 47

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 48.9 bits (117), Expect = 2e-08
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ----LEQELQRARQQ 171
           K  R+  +NR AA KSR RK   + +LE     L      L       R+Q
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 12/43 (27%), Positives = 24/43 (55%)

Query: 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQR 167
           K L+++ QN+ AA + R +K+A  + L     +L +  + L+ 
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKE 44

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 44.8 bits (106), Expect = 7e-07
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 119 EKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
            +S D   L+R A+N EAAR+SR RK   ++QLE    K+ +L  +      +
Sbjct: 4   PESSDPAALKR-ARNTEAARRSRARKLQRMKQLED---KVEELLSKNYHLENE 52

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 44.8 bits (106), Expect = 9e-07
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           +K   R  +N+ AA K R R++     L++   +L   +  LQ     
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIAN 48

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 117 SKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           SKE+    K  RR  +NR  A   R+++    ++LE  + +L Q  ++L      
Sbjct: 29  SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENAS 83

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 13/55 (23%), Positives = 28/55 (50%)

Query: 117 SKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           +K++    K  RR  +NR  A+  R ++      LE+ + +L Q  ++L++   +
Sbjct: 19  TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR 73

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
            + + +R AQNR A R  R RK+ +++ LE+   ++  L++       +
Sbjct: 6   QEPSSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHSSTTLE 51

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 11/69 (15%)

Query: 113 SSDKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESS-----------RLKLTQL 161
           S  K        +   R  +N  A RKSR + K    + +             + K+ QL
Sbjct: 3   SKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL 62

Query: 162 EQELQRARQ 170
            +EL   R 
Sbjct: 63  SRELSTLRN 71

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 113 SSDKSKEKSGDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ 171
           S  K        +   R  +N  A RKSR + K    + +    K+ +L  E +R +++
Sbjct: 3   SKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQH---KVLELTAENERLQKK 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	98.97
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	98.54
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	98.23
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	98.22
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	98.19
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	97.86
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	97.04
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	96.14
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	94.74
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	92.88
2wt7_B	90	Transcription factor MAFB; transcription, transcri	86.33

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=98.97  E-value=6.6e-10  Score=81.19  Aligned_cols=44  Identities=43%  Similarity=0.587  Sum_probs=36.7

Q ss_pred             HHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 021676          125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQ  171 (309)
Q Consensus       125 k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelqrarqQ  171 (309)
                      |-.||+..|||+|+.||.|||+||+.||.   ++.+||.|-..-+.|
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~---~v~~L~~eN~~L~~~   44 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLEN---RVAVLENQNKTLIEE   44 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999   567777776655543

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=98.54  E-value=1.1e-07  Score=71.10  Aligned_cols=48  Identities=38%  Similarity=0.461  Sum_probs=33.7

Q ss_pred             cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHH----HHHHHHHHHHhh
Q 021676          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKL----TQLEQELQRARQ  170 (309)
Q Consensus       123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL----~qleqelqrarq  170 (309)
                      +++..|+-++||||||+||.||++|+..||.....|    ..|+.|+.+-|+
T Consensus         7 ~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~   58 (63)
T 2dgc_A            7 SDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKK   58 (63)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566668899999999999999999999865444    345555555554

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=98.23  E-value=2.5e-06  Score=63.26  Aligned_cols=41  Identities=27%  Similarity=0.317  Sum_probs=34.0

Q ss_pred             HHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 021676          125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL  165 (309)
Q Consensus       125 k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqel  165 (309)
                      |-.||+-.||+||+|||.|||.|++.||...-.|..-..+|
T Consensus         2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L   42 (63)
T 2wt7_A            2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSAL   42 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999766665543333

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=98.22  E-value=2e-06  Score=63.39  Aligned_cols=36  Identities=39%  Similarity=0.386  Sum_probs=30.8

Q ss_pred             HHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 021676          125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ  160 (309)
Q Consensus       125 k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~q  160 (309)
                      |..||...||+||+|||.|||.|+++||.....|..
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~   36 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKA   36 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999999986655544

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=98.19  E-value=2.6e-06  Score=62.47  Aligned_cols=35  Identities=37%  Similarity=0.509  Sum_probs=30.3

Q ss_pred             HHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHH
Q 021676          126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQ  160 (309)
Q Consensus       126 ~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~q  160 (309)
                      -.+|+..||+||.|||.|||.|+++||...-.|..
T Consensus         2 R~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~   36 (61)
T 1t2k_D            2 RRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSS   36 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999999999986555543

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=97.86  E-value=2.5e-05  Score=59.81  Aligned_cols=38  Identities=34%  Similarity=0.432  Sum_probs=31.9

Q ss_pred             HHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 021676          126 TLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQ  166 (309)
Q Consensus       126 ~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleqelq  166 (309)
                      ..+|-||||+|+|-.|-||++||+.||.   |+.+||.+.+
T Consensus         9 ~~kR~~qNR~AQRafReRK~~~i~~LE~---~v~~le~~~~   46 (70)
T 1gd2_E            9 SSKRKAQNRAAQRAFRKRKEDHLKALET---QVVTLKELHS   46 (70)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            4688999999999999999999999998   5566665543

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=97.04  E-value=0.00065  Score=50.42  Aligned_cols=39  Identities=28%  Similarity=0.417  Sum_probs=27.2

Q ss_pred             HHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHHHHHHHH
Q 021676          125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQ  163 (309)
Q Consensus       125 k~lRRLAQNREAARKSRlRKKAYvQqLEssr~kL~qleq  163 (309)
                      |-.|+.-+||.||+++|.|||.+++.||..--.|.+-..
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~   40 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNE   40 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788899999999999999999999986555544333

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=96.14  E-value=0.019  Score=44.65  Aligned_cols=47  Identities=32%  Similarity=0.308  Sum_probs=36.5

Q ss_pred             cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHH---------hH--HHHHHHHHHHHHHh
Q 021676          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLES---------SR--LKLTQLEQELQRAR  169 (309)
Q Consensus       123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEs---------sr--~kL~qleqelqrar  169 (309)
                      |++-..|-..|.+||+|||-.+|.=.++++.         .+  .++.+|++|+..-|
T Consensus        13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr   70 (78)
T 1gu4_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777889999999999999998888743         32  45667777777665

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=94.74  E-value=0.024  Score=46.59  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=29.0

Q ss_pred             HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhH
Q 021676          124 QKTLRRLAQNREAARKSRLRKKAYVQQLESSR  155 (309)
Q Consensus       124 ~k~lRRLAQNREAARKSRlRKKAYvQqLEssr  155 (309)
                      -|-.||--.||++|+.||.||.+.+..||...
T Consensus        36 lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~   67 (107)
T 3a5t_A           36 LKQRRRTLKNRGYAASCRVKRVTQKEELEKQK   67 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            37789999999999999999999999999754

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=92.88  E-value=0.35  Score=38.25  Aligned_cols=47  Identities=30%  Similarity=0.285  Sum_probs=33.8

Q ss_pred             cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHh-----------HHHHHHHHHHHHHHh
Q 021676          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESS-----------RLKLTQLEQELQRAR  169 (309)
Q Consensus       123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEss-----------r~kL~qleqelqrar  169 (309)
                      |++-.+|-..|.+||||||-.+|.=.++++.-           +.++.+|+.|++.-|
T Consensus        13 d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr   70 (87)
T 1hjb_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR   70 (87)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67778888999999999999999877766432           234455555555544

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=86.33  E-value=2.2  Score=33.99  Aligned_cols=45  Identities=31%  Similarity=0.435  Sum_probs=34.9

Q ss_pred             cHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHhHHH----HHHHHHHHHH
Q 021676          123 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLK----LTQLEQELQR  167 (309)
Q Consensus       123 d~k~lRRLAQNREAARKSRlRKKAYvQqLEssr~k----L~qleqelqr  167 (309)
                      .-|-.||--.||-+|..||-||-.-+..||.....    +.+|.+|+.+
T Consensus        25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~   73 (90)
T 2wt7_B           25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSR   73 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44778999999999999999999999999986543    3445555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00