Citrus Sinensis ID: 021698

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MAENADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSSGSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAVEKETA
Secondary Structure (PSIPRED)
cccccccccccccEEEEEcccccHHHHHHHHHHHHHccccEEEccccccccccHHHHHHHHHccccccccEEEEEEccHHHHHHHHcccccEEEEccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHcccccccccccccccccEEEEEccEEEEEEEccccccccccEEEEEccccEEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHcHHHccccccEEEEEcccccHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHccccccEEEcccHHHHHHHHHHHcccEEEEEcccEcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccEEEEEccccccccccEcccccEEEEEEcccEEEEEEEcccccccccccccccEEEEEccEEEEEcccccEEEcccccEEEccccccEEEEEEEccEEEEEEccccEEEEcHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maenadaaaphplkIIAGADSFGAELKDALVSHLRSlnidvedlgtsdyysigaevgrrvsssdssetttrgLVACGTGVGVAIfanknpgvfattcltpadalntrsinNCNVLAVSGMSTSKESAVEILDTWlktpfkapcpasglkpwdeklscffdksmtempligkndkldsdssgstcsicclvknrelnpvemipggsmkiiresPTSAIVRfkagsvepahhhtfghdLVVLEGKKSvwnltkgerfdltvgdylftpagdvhrvkyYEETEFfikwdgrwdmfFDEDLETAKKAVEKETA
Flexible Loop (DISEMBL)
maenadaaaphplKIIAGADSFGAELKDALVSHLRSlnidvedlgtsDYYSIGAevgrrvsssdssetttRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGkndkldsdssgSTCSICClvknrelnpvemIPGGSMKIIRESPTSAIVRFKAGSVEPAHhhtfghdlvvlEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAVEKETA
Low Complexity Region (SEG)
MAENADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSSGSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAVEKETA
Disordered region (IsUnstruct)
************LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV*************TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMT******************TCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDED*************
Disordered Region (DISOPRED)
*************KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPC**SGL*PWDEKLSC***************************SICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLET**********
Disordered Region (DISEMBL)
*********PHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV**************RGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKND*********TCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETA*********
Disordered Region (DISPRO)
**********HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIG*********SGSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAVE*E**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAENADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSSGSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAVEKETA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q05212	310	DNA-damage-repair/tolerat	yes	no	0.974	0.970	0.698	1e-126
P37351	149	Ribose-5-phosphate isomer	N/A	no	0.398	0.825	0.348	8e-12
P26424	171	Galactose-6-phosphate iso	yes	no	0.414	0.748	0.317	3e-10
P53527	152	Probable ribose-5-phospha	yes	no	0.414	0.842	0.287	1e-09
P47636	152	Probable ribose-5-phospha	yes	no	0.404	0.822	0.305	3e-09
Q4L873	171	Galactose-6-phosphate iso	yes	no	0.401	0.725	0.315	3e-09
Q8CRJ3	171	Galactose-6-phosphate iso	yes	no	0.401	0.725	0.315	5e-09
Q5HM36	171	Galactose-6-phosphate iso	yes	no	0.401	0.725	0.315	5e-09
Q8NZV7	171	Galactose-6-phosphate iso	N/A	no	0.414	0.748	0.302	3e-08
Q48RC3	171	Galactose-6-phosphate iso	N/A	no	0.440	0.795	0.317	3e-08

>sp|Q05212|DR102_ARATH DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=2 SV=2

 Score =  451 bits (1160), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 215/308 (69%), Positives = 251/308 (81%), Gaps = 7/308 (2%)

Query: 5   ADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSD 64
           A +A   PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGRRVS+S 
Sbjct: 4   AVSAVDQPLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASS 63

Query: 65  SSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
           SSE   RGLV CGTGVGVA+FANK PGV+A TCL+  DA+N RSI+NCNVLA SG+ TS 
Sbjct: 64  SSEV--RGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSP 121

Query: 125 ESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDS-----DS 179
           E+A+EI D W+KTPFK+PCPASG +PW   +S F D S++EM  IGK+   DS     D 
Sbjct: 122 ETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDE 181

Query: 180 SGSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVV 239
           + ++C ICCL KNRE  PV+++PGGSMKI+RE+PTSAIVRFKAGSVEPAHHHTFGHDLVV
Sbjct: 182 TTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTFGHDLVV 241

Query: 240 LEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLET 299
           ++GKKSVWNL+K ER DL  GDYLFTPAGDVHRVKY+E+TEFFI WDG WD+F DEDLET
Sbjct: 242 IKGKKSVWNLSKKERADLVDGDYLFTPAGDVHRVKYHEDTEFFITWDGHWDIFLDEDLET 301

Query: 300 AKKAVEKE 307
           AKKA+E+E
Sbjct: 302 AKKAIEEE 309

Arabidopsis thaliana (taxid: 3702)

>sp|P37351|RPIB_ECOLI Ribose-5-phosphate isomerase B OS=Escherichia coli (strain K12) GN=rpiB PE=1 SV=2

 Score = 71.6 bits (174), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 9/132 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSET 68
           KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V+  +    
Sbjct: 3   KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGE---- 58

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct: 59  VDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAK 118

Query: 129 EILDTWLKTPFK 140
            I+D WL   ++
Sbjct: 119 MIVDAWLGAQYE 130

In addition to its activity on D-ribose 5-phosphate it probably also has activity on D-allose 6-phosphate.

Escherichia coli (strain K12) (taxid: 83333)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|P26424|LACB_STRMU Galactose-6-phosphate isomerase subunit LacB OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=lacB PE=3 SV=2

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 1/129 (0%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV-GRRVSSSDSSETTTR 71
           +KI  G D    ++K  L  HL+    +V D+GT D+      + G++V  + SS     
Sbjct: 1   MKIAIGCDHIVTDVKMELSKHLKEEGYEVLDVGTYDFTRTHYPIFGKKVGEAVSSGEADL 60

Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G+  CGTGVG++  ANK PGV          AL ++   N NV++  G    K    +I+
Sbjct: 61  GVCMCGTGVGISNAANKVPGVRTALVRDMTSALYSKEELNANVVSFGGAIIGKLLLFDIV 120

Query: 132 DTWLKTPFK 140
           D ++K  +K
Sbjct: 121 DAFIKAQYK 129

Streptococcus mutans (taxid: 1309)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P53527|RPIB_MYCPN Probable ribose-5-phosphate isomerase B OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=rpiB PE=1 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)

Query: 11  HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIG--AEVGRRVSSSDSSET 68
           HP+ I   +D  G ELK  ++ HL    + V DLG ++   +    +    ++ +  +  
Sbjct: 5   HPIYI--ASDHTGLELKSLVIKHLEQQKLQVIDLGPTELDPLDDYPDYAFLLAQTMQANP 62

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
            + G++ CGTGVGV + ANK  G+ A   +    A   R  ++ NVL +S      E  +
Sbjct: 63  NSLGILICGTGVGVCMAANKAKGILAALVVDSKTAALARQHDDANVLCLSSRFVVPEENI 122

Query: 129 EILDTWLKTPFK 140
           +I+D +L+  F+
Sbjct: 123 KIVDEFLQAQFE 134

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|P47636|RPIB_MYCGE Probable ribose-5-phosphate isomerase B OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=rpiB PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLG------TSDYYSIGAEVGRRVSSSDSS 66
             I   +D  G  LK  +  HL++   +V DLG        DY      V  +V  +   
Sbjct: 3   FNIFIASDHTGLTLKKIISEHLKTKQFNVVDLGPNYFDANDDYPDFAFLVADKVKKNSDK 62

Query: 67  ETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
           +    G++ CGTGVGV + ANK  GV A   ++   A   R  +N NVL +S    +   
Sbjct: 63  DL---GILICGTGVGVCMAANKVKGVLAALVVSEKTAALARQHDNANVLCLSSRFVTDSE 119

Query: 127 AVEILDTWLKTPFK 140
            ++I+D +LK  F+
Sbjct: 120 NIKIVDDFLKANFE 133

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 6

>sp|Q4L873|LACB_STAHJ Galactose-6-phosphate isomerase subunit LacB OS=Staphylococcus haemolyticus (strain JCSC1435) GN=lacB PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 9/133 (6%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSI-GAEVGRRVSSSDSSE 67
           +KI  G D    + K  +  HL++   +V D+GT D+    Y I G +VG +V+S ++  
Sbjct: 1   MKIAIGCDHIVTDTKMEVSQHLKAQGHEVIDVGTYDFTRTHYPIFGKKVGEKVASGEAD- 59

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+  CGTGVG++  ANK PGV          AL ++   N NV++  G    +   
Sbjct: 60  ---LGVCICGTGVGISNAANKVPGVRTALVRDMTSALYSKEELNANVVSFGGKVAGELFI 116

Query: 128 VEILDTWLKTPFK 140
            +I+D ++K  +K
Sbjct: 117 FDIVDAFIKAEYK 129

Staphylococcus haemolyticus (strain JCSC1435) (taxid: 279808)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8CRJ3|LACB_STAES Galactose-6-phosphate isomerase subunit LacB OS=Staphylococcus epidermidis (strain ATCC 12228) GN=lacB PE=3 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 9/133 (6%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSI-GAEVGRRVSSSDSSE 67
           +KI  G D    + K  +  HL+S   +V D+GT D+    Y I G +VG +V+S ++  
Sbjct: 1   MKIAIGCDHIVTDTKMEVSQHLKSQGHEVIDVGTYDFTRTHYPIYGKKVGEKVASGEAD- 59

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+  CGTGVG++  ANK PGV          AL ++   N NV++  G    +   
Sbjct: 60  ---LGVCICGTGVGISNAANKVPGVRTALVRDMTSALYSKEELNANVVSFGGKVAGELFI 116

Query: 128 VEILDTWLKTPFK 140
            +I+D +++  +K
Sbjct: 117 FDIVDAFIEAEYK 129

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5HM36|LACB_STAEQ Galactose-6-phosphate isomerase subunit LacB OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=lacB PE=3 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 9/133 (6%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSI-GAEVGRRVSSSDSSE 67
           +KI  G D    + K  +  HL+S   +V D+GT D+    Y I G +VG +V+S ++  
Sbjct: 1   MKIAIGCDHIVTDTKMEVSQHLKSQGHEVIDVGTYDFTRTHYPIYGKKVGEKVASGEAD- 59

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+  CGTGVG++  ANK PGV          AL ++   N NV++  G    +   
Sbjct: 60  ---LGVCICGTGVGISNAANKVPGVRTALVRDMTSALYSKEELNANVVSFGGKVAGELFI 116

Query: 128 VEILDTWLKTPFK 140
            +I+D +++  +K
Sbjct: 117 FDIVDAFIEAEYK 129

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8NZV7|LACB1_STRP8 Galactose-6-phosphate isomerase subunit LacB 1 OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=lacB1 PE=3 SV=1

 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 60/129 (46%), Gaps = 1/129 (0%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV-GRRVSSSDSSETTTR 71
           +KI  G D      K A+   L+S   DV D GT D+      + G++V  +  +E    
Sbjct: 1   MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNEQADL 60

Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G+  CGTGVG+    NK PG+ +        AL  +   N NV+   G  T +    +I+
Sbjct: 61  GVCICGTGVGINNAVNKVPGIRSALVRDMTTALYAKEELNANVIGFGGKITGELLMCDII 120

Query: 132 DTWLKTPFK 140
           D ++K  +K
Sbjct: 121 DAFIKAEYK 129

Streptococcus pyogenes serotype M18 (taxid: 301451)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q48RC3|LACB2_STRPM Galactose-6-phosphate isomerase subunit LacB 2 OS=Streptococcus pyogenes serotype M28 (strain MGAS6180) GN=lacB2 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 12/148 (8%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSD----YYSI-GAEVGRRVSSSDSSE 67
           +KI  G D      K A+V +L+S   ++ D GT D    +Y I G +VG  V+S ++  
Sbjct: 1   MKIAVGCDHIVTYEKIAVVDYLKSQGHEIIDCGTYDNVRTHYPIFGKKVGEAVASGEAE- 59

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+V CGTGVG+    NK PG+ A        A+ ++   N NV+   G        
Sbjct: 60  ---LGVVICGTGVGITNAVNKVPGIRAALVRDMTSAIYSKEELNANVIGFGGKIIGGLLM 116

Query: 128 VEILDTWLKTPFKAPCPASGLKPWDEKL 155
            +I+D +L   +K   P    K W EK+
Sbjct: 117 NDIIDAFLAAEYK---PTEENKKWIEKM 141

Streptococcus pyogenes serotype M28 (taxid: 319700)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
359487816	312	PREDICTED: DNA-damage-repair/toleration	0.964	0.955	0.743	1e-131
147812118	316	hypothetical protein VITISV_010562 [Viti	0.964	0.943	0.743	1e-131
225451267	300	PREDICTED: DNA-damage-repair/toleration	0.964	0.993	0.743	1e-131
84468444	302	putative DNA-damage-repair/toleration pr	0.935	0.956	0.756	1e-127
356573087	300	PREDICTED: DNA-damage-repair/toleration	0.948	0.976	0.725	1e-127
255542356	318	DNA-damage-repair/toleration protein DRT	0.974	0.946	0.703	1e-127
255639307	300	unknown [Glycine max]	0.948	0.976	0.725	1e-126
357512241	304	DNA-damage-repair/toleration protein DRT	0.941	0.957	0.75	1e-125
18397039	310	DNA-damage-repair/toleration protein DRT	0.974	0.970	0.698	1e-124
224131318	333	predicted protein [Populus trichocarpa]	0.951	0.882	0.689	1e-123

>gi|359487816|ref|XP_003633653.1| PREDICTED: DNA-damage-repair/toleration protein DRT102-like isoform 2 [Vitis vinifera]

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/308 (74%), Positives = 260/308 (84%), Gaps = 10/308 (3%)

Query: 1   MAENADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRV 60
           MAE+ +   PH  KI+ GADSFG  LK+ALVSHL+SLNI+VED+GT  YYS+ AE+GRRV
Sbjct: 1   MAEDGE---PHRFKIVTGADSFGCSLKEALVSHLKSLNIEVEDVGTDSYYSVAAEIGRRV 57

Query: 61  SSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM 120
           SSS      TRGL+ACGTGVGVA+FANK PGVFA TCL+ ADALN RSINN NVLAVSGM
Sbjct: 58  SSSPED---TRGLLACGTGVGVAMFANKFPGVFAATCLSAADALNARSINNSNVLAVSGM 114

Query: 121 STSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSS 180
           ST+ ESAVEILDTWLKTPFK+PCPAS  KPW +++  F D S++EM  IG      SDS 
Sbjct: 115 STAPESAVEILDTWLKTPFKSPCPASEFKPWPKEIESFLDNSVSEMSKIGSEKTKTSDS- 173

Query: 181 GSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVL 240
              CSICCLVKNRELNP+++IPGGSMKI+RESPTSA+VRF+AGSVEPAHHHTFGHDLVV+
Sbjct: 174 ---CSICCLVKNRELNPIDIIPGGSMKILRESPTSAVVRFEAGSVEPAHHHTFGHDLVVM 230

Query: 241 EGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETA 300
           +GKKSVWNLTK ERFDL VGDYL+TPAGDVHRVKYYE+TEFFIKWDG WDMFFDEDL TA
Sbjct: 231 KGKKSVWNLTKKERFDLIVGDYLYTPAGDVHRVKYYEDTEFFIKWDGHWDMFFDEDLATA 290

Query: 301 KKAVEKET 308
           K+A EKE+
Sbjct: 291 KEAAEKES 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147812118|emb|CAN65782.1| hypothetical protein VITISV_010562 [Vitis vinifera]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/308 (74%), Positives = 260/308 (84%), Gaps = 10/308 (3%)

Query: 1   MAENADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRV 60
           MAE+ +   PH  KI+ GADSFG  LK+ALVSHL+SLNI+VED+GT  YYS+ AE+GRRV
Sbjct: 1   MAEDGE---PHRFKIVTGADSFGCSLKEALVSHLKSLNIEVEDVGTDSYYSVAAEIGRRV 57

Query: 61  SSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM 120
           SSS      TRGL+ACGTGVGVA+FANK PGVFA TCL+ ADALN RSINN NVLAVSGM
Sbjct: 58  SSSPED---TRGLLACGTGVGVAMFANKFPGVFAATCLSAADALNARSINNSNVLAVSGM 114

Query: 121 STSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSS 180
           ST+ ESAVEILDTWLKTPFK+PCPAS  KPW +++  F D S++EM  IG      SDS 
Sbjct: 115 STAPESAVEILDTWLKTPFKSPCPASEFKPWPKEIESFLDNSVSEMSKIGSEKTKTSDS- 173

Query: 181 GSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVL 240
              CSICCLVKNRELNP+++IPGGSMKI+RESPTSA+VRF+AGSVEPAHHHTFGHDLVV+
Sbjct: 174 ---CSICCLVKNRELNPIDIIPGGSMKILRESPTSAVVRFEAGSVEPAHHHTFGHDLVVM 230

Query: 241 EGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETA 300
           +GKKSVWNLTK ERFDL VGDYL+TPAGDVHRVKYYE+TEFFIKWDG WDMFFDEDL TA
Sbjct: 231 KGKKSVWNLTKKERFDLIVGDYLYTPAGDVHRVKYYEDTEFFIKWDGHWDMFFDEDLATA 290

Query: 301 KKAVEKET 308
           K+A EKE+
Sbjct: 291 KEAAEKES 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451267|ref|XP_002277284.1| PREDICTED: DNA-damage-repair/toleration protein DRT102-like isoform 1 [Vitis vinifera]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/308 (74%), Positives = 260/308 (84%), Gaps = 10/308 (3%)

Query: 1   MAENADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRV 60
           MAE+ +   PH  KI+ GADSFG  LK+ALVSHL+SLNI+VED+GT  YYS+ AE+GRRV
Sbjct: 1   MAEDGE---PHRFKIVTGADSFGCSLKEALVSHLKSLNIEVEDVGTDSYYSVAAEIGRRV 57

Query: 61  SSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM 120
           SSS      TRGL+ACGTGVGVA+FANK PGVFA TCL+ ADALN RSINN NVLAVSGM
Sbjct: 58  SSSPED---TRGLLACGTGVGVAMFANKFPGVFAATCLSAADALNARSINNSNVLAVSGM 114

Query: 121 STSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSS 180
           ST+ ESAVEILDTWLKTPFK+PCPAS  KPW +++  F D S++EM  IG      SDS 
Sbjct: 115 STAPESAVEILDTWLKTPFKSPCPASEFKPWPKEIESFLDNSVSEMSKIGSEKTKTSDS- 173

Query: 181 GSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVL 240
              CSICCLVKNRELNP+++IPGGSMKI+RESPTSA+VRF+AGSVEPAHHHTFGHDLVV+
Sbjct: 174 ---CSICCLVKNRELNPIDIIPGGSMKILRESPTSAVVRFEAGSVEPAHHHTFGHDLVVM 230

Query: 241 EGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETA 300
           +GKKSVWNLTK ERFDL VGDYL+TPAGDVHRVKYYE+TEFFIKWDG WDMFFDEDL TA
Sbjct: 231 KGKKSVWNLTKKERFDLIVGDYLYTPAGDVHRVKYYEDTEFFIKWDGHWDMFFDEDLATA 290

Query: 301 KKAVEKET 308
           K+A EKE+
Sbjct: 291 KEAAEKES 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84468444|dbj|BAE71305.1| putative DNA-damage-repair/toleration protein DRT102 [Trifolium pratense]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 224/296 (75%), Positives = 253/296 (85%), Gaps = 7/296 (2%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSET-TTR 71
           +KIIAGAD FG  LKDALVSHLRSLNI VEDLGTS YYS GAEVGRRVS S SS +   R
Sbjct: 8   IKIIAGADDFGTPLKDALVSHLRSLNIQVEDLGTSSYYSAGAEVGRRVSQSISSSSPEVR 67

Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           GLVACGTG GV+IFANK PGVFA TCLTP+DA+N RSINN NVLAVSG  TS ESA+EI+
Sbjct: 68  GLVACGTGAGVSIFANKFPGVFAATCLTPSDAVNARSINNSNVLAVSGKYTSTESAIEIV 127

Query: 132 DTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSSGSTCSICCLVK 191
           +TWL TPFK+PCPA+  K W +++  F DKS+ EMP IGK + +D      TC++CCLVK
Sbjct: 128 NTWLNTPFKSPCPANDNKSWPQEIENFLDKSLVEMPEIGKGEPVD------TCAVCCLVK 181

Query: 192 NRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK 251
           NRELNP+++IPGGSMKI+RE+PTSA VRFKAGSVEPAHHHTFGHDLVV+EGKKSVWNLTK
Sbjct: 182 NRELNPIDLIPGGSMKIVRETPTSAFVRFKAGSVEPAHHHTFGHDLVVIEGKKSVWNLTK 241

Query: 252 GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAVEKE 307
            ER+DLTVGDYLFTPAGDVHRVKY+E+TEFFIKWDG WDMFFDEDLET K A++KE
Sbjct: 242 EERYDLTVGDYLFTPAGDVHRVKYHEDTEFFIKWDGHWDMFFDEDLETGKIAIDKE 297

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573087|ref|XP_003554696.1| PREDICTED: DNA-damage-repair/toleration protein DRT102-like [Glycine max]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/302 (72%), Positives = 252/302 (83%), Gaps = 9/302 (2%)

Query: 7   AAAP-HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDS 65
           AA P  P+KIIA AD FG  LKDALV+HLR+LNI VEDLGTS YYS GAEVGRRVS S S
Sbjct: 2   AAEPTRPVKIIAAADDFGTPLKDALVAHLRTLNIQVEDLGTSSYYSAGAEVGRRVSQSSS 61

Query: 66  SETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKE 125
           S+   RGLVACGTG GV+IFANK PGV+A TCL+P+DA+N RSINN NVLAVSG  TS E
Sbjct: 62  SDI--RGLVACGTGAGVSIFANKYPGVYAATCLSPSDAVNARSINNSNVLAVSGKYTSPE 119

Query: 126 SAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSSGSTCS 185
           +AVE+LD WL TPFK+ CPA+  KPW +++  F + S+ EMP IGK    D      TC+
Sbjct: 120 AAVEVLDAWLNTPFKSACPANDDKPWPQEIHSFLEHSLVEMPEIGKEGAFD------TCA 173

Query: 186 ICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKS 245
           +CCLVKNRELNP+++IPGGSMKI+RE+PTSA VRFKAGSVEPAHHHTFGHDLVV+EGKKS
Sbjct: 174 VCCLVKNRELNPIDLIPGGSMKILRETPTSAFVRFKAGSVEPAHHHTFGHDLVVIEGKKS 233

Query: 246 VWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAVE 305
           VWNLTK +R+DLTVGDYLFTP GDVHRVKY+E+TEFFIKWDG WDMFFDEDL+TAK A++
Sbjct: 234 VWNLTKEQRYDLTVGDYLFTPPGDVHRVKYHEDTEFFIKWDGHWDMFFDEDLDTAKNAID 293

Query: 306 KE 307
           KE
Sbjct: 294 KE 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542356|ref|XP_002512241.1| DNA-damage-repair/toleration protein DRT102, putative [Ricinus communis] gi|223548202|gb|EEF49693.1| DNA-damage-repair/toleration protein DRT102, putative [Ricinus communis]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 216/307 (70%), Positives = 258/307 (84%), Gaps = 6/307 (1%)

Query: 7   AAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSS 66
           A +P PLKII GADS G  LKDAL+SHLRSLNIDVEDLGTS YY+IGAEVGRRVS+++S+
Sbjct: 3   ADSPQPLKIITGADSLGCSLKDALISHLRSLNIDVEDLGTSSYYTIGAEVGRRVSAANST 62

Query: 67  ETT--TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
             +   RGLVACGTG GV+IFANK PGV+A+TCL+  DA NTRSINNCNVLAVSG+ T+ 
Sbjct: 63  SPSPEIRGLVACGTGAGVSIFANKFPGVYASTCLSTGDAANTRSINNCNVLAVSGLFTTP 122

Query: 125 ESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGK----NDKLDSDSS 180
           ESA++ILDTWL TPFKAPCPAS   PW  ++S F D S+ EMP IG+    N K +   +
Sbjct: 123 ESAIQILDTWLSTPFKAPCPASNNAPWSSEISEFLDNSLLEMPEIGQKVDTNIKEEEKET 182

Query: 181 GSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVL 240
            STCS+CCL KNR+L+ +++IPGGSMKI+RESPTSAIVRFKAGS+EPAHHHTFGHD+VV+
Sbjct: 183 LSTCSLCCLAKNRKLDEIDLIPGGSMKILRESPTSAIVRFKAGSIEPAHHHTFGHDIVVM 242

Query: 241 EGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETA 300
           +G KSVWNL+K  ++DL VGDYLFTPAGDVHRVKY+E+TEFFIKW+G+WD+FFDEDLE A
Sbjct: 243 KGSKSVWNLSKKVKYDLGVGDYLFTPAGDVHRVKYFEDTEFFIKWEGKWDLFFDEDLEVA 302

Query: 301 KKAVEKE 307
           K  +EKE
Sbjct: 303 KTEIEKE 309

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639307|gb|ACU19951.1| unknown [Glycine max]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/302 (72%), Positives = 251/302 (83%), Gaps = 9/302 (2%)

Query: 7   AAAP-HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDS 65
           AA P  P+KIIA AD FG  LKDALV+HLR+LNI VEDLGTS YYS GAEVGRRVS S S
Sbjct: 2   AAEPTRPVKIIAAADDFGTPLKDALVAHLRTLNIQVEDLGTSSYYSAGAEVGRRVSQSSS 61

Query: 66  SETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKE 125
           S+   RGLVACGTG GV+IFANK PGV+A TCL+P+DA+N RSINN NVLAVSG  TS E
Sbjct: 62  SDI--RGLVACGTGAGVSIFANKYPGVYAATCLSPSDAVNARSINNSNVLAVSGKYTSPE 119

Query: 126 SAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSSGSTCS 185
           +AVE+LD WL TPFK+ CPA+  KPW +++  F + S+ EMP IGK    D      TC+
Sbjct: 120 AAVEVLDAWLNTPFKSACPANDDKPWPQEIHSFLEHSLVEMPEIGKEGAFD------TCA 173

Query: 186 ICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKS 245
           +CCLVKNRELNP+++IPGGSMKI+RE+PTSA VRFKAGSVEPAHHHTFGHDLVV+EGKKS
Sbjct: 174 VCCLVKNRELNPIDLIPGGSMKILRETPTSAFVRFKAGSVEPAHHHTFGHDLVVIEGKKS 233

Query: 246 VWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAVE 305
           VWNLTK  R+DLTVGDYLFTP GDVHRVKY+E+TEFFIKWDG WDMFFDEDL+TAK A++
Sbjct: 234 VWNLTKEPRYDLTVGDYLFTPPGDVHRVKYHEDTEFFIKWDGHWDMFFDEDLDTAKNAID 293

Query: 306 KE 307
           KE
Sbjct: 294 KE 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512241|ref|XP_003626409.1| DNA-damage-repair/toleration protein DRT102 [Medicago truncatula] gi|355501424|gb|AES82627.1| DNA-damage-repair/toleration protein DRT102 [Medicago truncatula]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/296 (75%), Positives = 251/296 (84%), Gaps = 5/296 (1%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETT-TR 71
           +KIIAGAD FG  LKDAL+SHLRSLNI VEDLGTS YYS GA VGRRVS S SS +   R
Sbjct: 8   IKIIAGADDFGTPLKDALLSHLRSLNIQVEDLGTSSYYSAGAVVGRRVSQSISSSSQEVR 67

Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           GLVACGTG GV+IFANK PGVFA TCLTP+DA+N RSINN NVLAVSG  TS E+A+EI+
Sbjct: 68  GLVACGTGAGVSIFANKFPGVFAATCLTPSDAVNARSINNSNVLAVSGKYTSPETAIEIV 127

Query: 132 DTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSSGSTCSICCLVK 191
            TWL TPFK+PCPA+  KPW +++  F DKS+ EMP IGK++    DS    C++CCLVK
Sbjct: 128 KTWLNTPFKSPCPANDNKPWPQEIENFLDKSLVEMPEIGKSEPEPVDS----CAVCCLVK 183

Query: 192 NRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK 251
           NRELNP+++IPGGSMKIIRE+PTSA VRFKAGSVEPAHHHTFGHDLVV+EGKKSVWNLTK
Sbjct: 184 NRELNPIDLIPGGSMKIIRETPTSAFVRFKAGSVEPAHHHTFGHDLVVIEGKKSVWNLTK 243

Query: 252 GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAVEKE 307
            ER+DLTVGDYLFTPAGDVHRVKY+E+TEFFIKWD  WDMFFDEDLET K A++KE
Sbjct: 244 EERYDLTVGDYLFTPAGDVHRVKYHEDTEFFIKWDSHWDMFFDEDLETGKIAIDKE 299

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397039|ref|NP_566241.1| DNA-damage-repair/toleration protein DRT102 [Arabidopsis thaliana] gi|148872800|sp|Q05212.2|DR102_ARATH RecName: Full=DNA-damage-repair/toleration protein DRT102 gi|15529165|gb|AAK97677.1| AT3g04880/T9J14_17 [Arabidopsis thaliana] gi|23505883|gb|AAN28801.1| At3g04880/T9J14_17 [Arabidopsis thaliana] gi|332640629|gb|AEE74150.1| DNA-damage-repair/toleration protein DRT102 [Arabidopsis thaliana]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/308 (69%), Positives = 251/308 (81%), Gaps = 7/308 (2%)

Query: 5   ADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSD 64
           A +A   PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGRRVS+S 
Sbjct: 4   AVSAVDQPLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASS 63

Query: 65  SSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
           SSE   RGLV CGTGVGVA+FANK PGV+A TCL+  DA+N RSI+NCNVLA SG+ TS 
Sbjct: 64  SSEV--RGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSP 121

Query: 125 ESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDS-----DS 179
           E+A+EI D W+KTPFK+PCPASG +PW   +S F D S++EM  IGK+   DS     D 
Sbjct: 122 ETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDE 181

Query: 180 SGSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVV 239
           + ++C ICCL KNRE  PV+++PGGSMKI+RE+PTSAIVRFKAGSVEPAHHHTFGHDLVV
Sbjct: 182 TTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTFGHDLVV 241

Query: 240 LEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLET 299
           ++GKKSVWNL+K ER DL  GDYLFTPAGDVHRVKY+E+TEFFI WDG WD+F DEDLET
Sbjct: 242 IKGKKSVWNLSKKERADLVDGDYLFTPAGDVHRVKYHEDTEFFITWDGHWDIFLDEDLET 301

Query: 300 AKKAVEKE 307
           AKKA+E+E
Sbjct: 302 AKKAIEEE 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131318|ref|XP_002328509.1| predicted protein [Populus trichocarpa] gi|222838224|gb|EEE76589.1| predicted protein [Populus trichocarpa]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/303 (68%), Positives = 253/303 (83%), Gaps = 9/303 (2%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETT---- 69
           KIIAGAD+FG  LKD LVSHLRSLNI+VEDLGTS YYSI AEVGR VS++ ++ ++    
Sbjct: 22  KIIAGADAFGCTLKDTLVSHLRSLNIEVEDLGTSSYYSIAAEVGRLVSAASTTPSSPTPE 81

Query: 70  TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVE 129
            RGLVACGTGVGV+IFANK PGVFA TCL+ ADA N+RSINN NVLAVSGM+TS +SA+E
Sbjct: 82  IRGLVACGTGVGVSIFANKFPGVFAATCLSTADAANSRSINNSNVLAVSGMATSPDSAIE 141

Query: 130 ILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKN-----DKLDSDSSGSTC 184
           ILDTWLKTPFK+PCPAS   PW E++  F D S++EMP+IG        + +   + S C
Sbjct: 142 ILDTWLKTPFKSPCPASNSAPWGEEIESFLDNSLSEMPVIGAKLSDPKQQEEGSINTSAC 201

Query: 185 SICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKK 244
           ++CCLVKNR+L+P+E+IPGG+MKI+RESPTSAIV FKAGSVEPAHHHTFGHDLVVL+G K
Sbjct: 202 ALCCLVKNRKLDPIEIIPGGAMKIVRESPTSAIVSFKAGSVEPAHHHTFGHDLVVLKGSK 261

Query: 245 SVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAV 304
            VWN++K  ++DL VGDYLFTPAGDVHRVKY+E+TEFFIKW+G+WD+FFDE++E AK  +
Sbjct: 262 RVWNMSKKAKYDLVVGDYLFTPAGDVHRVKYFEDTEFFIKWEGKWDIFFDEEMEVAKSEI 321

Query: 305 EKE 307
           EKE
Sbjct: 322 EKE 324

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2114890	310	DRT102 "DNA-DAMAGE-REPAIR/TOLE	0.974	0.970	0.698	9.1e-116
TIGR_CMR|CHY_2558	159	CHY_2558 "ribose 5-phosphate i	0.414	0.805	0.356	3.7e-15
UNIPROTKB|P37351	149	rpiB [Escherichia coli K-12 (t	0.398	0.825	0.348	3.5e-13
TIGR_CMR|GSU_1606	148	GSU_1606 "ribose 5-phosphate i	0.378	0.790	0.349	1.3e-12
TIGR_CMR|CJE_1003	145	CJE_1003 "ribose 5-phosphate i	0.407	0.868	0.299	1.7e-11
TIGR_CMR|BA_5560	147	BA_5560 "sugar-phosphate isome	0.401	0.843	0.305	5e-10
TIGR_CMR|SPO_3180	149	SPO_3180 "ribose 5-phosphate i	0.398	0.825	0.280	1.4e-09
TIGR_CMR|DET_0643	152	DET_0643 "ribose-5-phosphate i	0.398	0.809	0.338	2.3e-09
TIGR_CMR|DET_0677	152	DET_0677 "ribose-5-phosphate i	0.398	0.809	0.338	2.3e-09
TIGR_CMR|APH_0642	143	APH_0642 "ribose 5-phosphate i	0.388	0.839	0.303	3.8e-09

TAIR|locus:2114890 DRT102 "DNA-DAMAGE-REPAIR/TOLERATION 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
 Identities = 215/308 (69%), Positives = 251/308 (81%)

Query:     5 ADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSD 64
             A +A   PLKII GAD FGA LKDA+V+HLRSL IDVED G S YYS G+EVGRRVS+S 
Sbjct:     4 AVSAVDQPLKIITGADDFGASLKDAMVTHLRSLGIDVEDTGVSSYYSAGSEVGRRVSASS 63

Query:    65 SSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
             SSE   RGLV CGTGVGVA+FANK PGV+A TCL+  DA+N RSI+NCNVLA SG+ TS 
Sbjct:    64 SSEV--RGLVCCGTGVGVAMFANKFPGVYAATCLSVEDAVNARSISNCNVLAFSGIKTSP 121

Query:   125 ESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDS-----DS 179
             E+A+EI D W+KTPFK+PCPASG +PW   +S F D S++EM  IGK+   DS     D 
Sbjct:   122 ETALEIFDAWIKTPFKSPCPASGSEPWSSVISSFLDNSLSEMSQIGKSTAGDSTTKKIDE 181

Query:   180 SGSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVV 239
             + ++C ICCL KNRE  PV+++PGGSMKI+RE+PTSAIVRFKAGSVEPAHHHTFGHDLVV
Sbjct:   182 TTASCVICCLAKNREFTPVDIMPGGSMKIVRETPTSAIVRFKAGSVEPAHHHTFGHDLVV 241

Query:   240 LEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLET 299
             ++GKKSVWNL+K ER DL  GDYLFTPAGDVHRVKY+E+TEFFI WDG WD+F DEDLET
Sbjct:   242 IKGKKSVWNLSKKERADLVDGDYLFTPAGDVHRVKYHEDTEFFITWDGHWDIFLDEDLET 301

Query:   300 AKKAVEKE 307
             AKKA+E+E
Sbjct:   302 AKKAIEEE 309

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000719 "photoreactive repair" evidence=IGI

GO:0009411 "response to UV" evidence=IGI

TIGR_CMR|CHY_2558 CHY_2558 "ribose 5-phosphate isomerase B" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 193 (73.0 bits), Expect = 3.7e-15, P = 3.7e-15
 Identities = 46/129 (35%), Positives = 67/129 (51%)

Query:    13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIG-AEVGRRVSSSDSSETTTR 71
             +KI  GAD  G  LK+ +  HL    I V D GT    S+   + G  V+ +   +    
Sbjct:     1 MKIAIGADHAGFNLKEEIKKHLEKKGIAVIDKGTYSAESVDYPDFGEAVAEAVVQKEVDF 60

Query:    72 GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
             G+V CGTG+G++I ANK PG+ A  C     A + R  N+ NVLA+         A++I+
Sbjct:    61 GIVICGTGIGISIAANKVPGIRAALCSDTFSAHSAREHNDANVLALGARVVGVGLALDIV 120

Query:   132 DTWLKTPFK 140
             DT+L   F+
Sbjct:   121 DTFLGASFE 129

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

UNIPROTKB|P37351 rpiB [Escherichia coli K-12 (taxid:83333)]

 Score = 176 (67.0 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 46/132 (34%), Positives = 65/132 (49%)

Query:    14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSET 68
             KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V+  +    
Sbjct:     3 KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGE---- 58

Query:    69 TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
                G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct:    59 VDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAK 118

Query:   129 EILDTWLKTPFK 140
              I+D WL   ++
Sbjct:   119 MIVDAWLGAQYE 130

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA;IGI;IDA

GO:0019316 "D-allose catabolic process" evidence=IMP

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0008786 "allose 6-phosphate isomerase activity" evidence=IMP;IDA

TIGR_CMR|GSU_1606 GSU_1606 "ribose 5-phosphate isomerase B, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 171 (65.3 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 44/126 (34%), Positives = 64/126 (50%)

Query:    15 IIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETT 69
             I+ G+D  G ELK+A+   L       ED GT      DY   G +V RRVS+ ++    
Sbjct:     2 IVVGSDHGGLELKEAVKRLLAERGETFEDCGTDNGNSVDYPDFGIKVARRVSNGEAG--- 58

Query:    70 TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVE 129
              +G++ CGTG+G++I ANK P V A        A   +  NN N+L + G    +  A E
Sbjct:    59 -KGILLCGTGIGMSIVANKFPRVRAALATDAFMARMAKEHNNANILVLGGRVLEEAVARE 117

Query:   130 ILDTWL 135
             ++  WL
Sbjct:   118 MVIAWL 123

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0006098 "pentose-phosphate shunt" evidence=ISS

TIGR_CMR|CJE_1003 CJE_1003 "ribose 5-phosphate isomerase B" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 161 (61.7 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 38/127 (29%), Positives = 67/127 (52%)

Query:    14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGL 73
             KI   +D  G ELK+ +   L+  NI   DLGT+   S        + +   ++ +  G+
Sbjct:     5 KIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCDYPDYAHLLAEKINKRSF-GI 63

Query:    74 VACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDT 133
             + CG+G+G++I AN++  +    C     A   R  N+ NVLA+ G     E A++I++ 
Sbjct:    64 LICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDANVLALGGRLIGVELAIDIIEK 123

Query:   134 WLKTPFK 140
             +++TPF+
Sbjct:   124 FIQTPFE 130

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

TIGR_CMR|BA_5560 BA_5560 "sugar-phosphate isomerase, RpiB/LacA/LacB family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 148 (57.2 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 41/134 (30%), Positives = 62/134 (46%)

Query:    13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSS 66
             +K++  +D  G  ++  LVS L  LNI+  DLG        DY          V++ +  
Sbjct:     1 MKVVIASDHGGMNIRKELVSLLEELNIEYIDLGCECEAGSVDYPDFAFPAAEMVANGE-- 58

Query:    67 ETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
                 RG++ CGTG+G++I ANK  G+          A  TR  N+ N+LA+         
Sbjct:    59 --VDRGILVCGTGIGMSIAANKVNGIRCALVHDTFSARATREHNDTNMLAMGERVIGAGL 116

Query:   127 AVEILDTWLKTPFK 140
             A +I   WL T F+
Sbjct:   117 ARDIAKIWLTTEFE 130

GO:0016052 "carbohydrate catabolic process" evidence=ISS

GO:0016861 "intramolecular oxidoreductase activity, interconverting aldoses and ketoses" evidence=ISS

TIGR_CMR|SPO_3180 SPO_3180 "ribose 5-phosphate isomerase B" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 144 (55.7 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 37/132 (28%), Positives = 65/132 (49%)

Query:    14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLG--TSD---YYSIGAEVGRRVSSSDSSET 68
             +I+  +D    +L+ A+  H+ +   +V D+G  T++   Y   G     RV+S D S  
Sbjct:     6 RIVLSSDHAAIDLRRAVADHISAQGWEVVDIGPQTTESTHYPKHGRAAAERVASGDCS-- 63

Query:    69 TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
                G++ CGTG G+ + ANK  G+    C     A   R  N+ N+L++      +  A+
Sbjct:    64 --LGIILCGTGQGIMMAANKVAGIRCGVCFDTFSARMIRMHNDANMLSLGARVVGEGLAL 121

Query:   129 EILDTWLKTPFK 140
             +I+D +L   F+
Sbjct:   122 DIVDAFLSAEFE 133

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

TIGR_CMR|DET_0643 DET_0643 "ribose-5-phosphate isomerase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 142 (55.0 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 45/133 (33%), Positives = 58/133 (43%)

Query:    13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT------SDYYSIGAEVGRRVSSSDSS 66
             + +  GAD  G  LK  L+  L  L I V DLG        DY      V R+V+     
Sbjct:     4 ISVAIGADHGGYGLKTDLLPFLNQLGIKVLDLGACTYDSADDYPDFALAVARKVACGQ-- 61

Query:    67 ETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
               T RG++ CG+GVG  I ANK  GV A  C     A      ++ NVL +       E 
Sbjct:    62 --TDRGIIICGSGVGACITANKIKGVRAGLCHDVYSAHQGVEHDDMNVLCLGARVIGIEV 119

Query:   127 AVEILDTWLKTPF 139
             A EI+  +L   F
Sbjct:   120 AKEIITAFLNARF 132

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

TIGR_CMR|DET_0677 DET_0677 "ribose-5-phosphate isomerase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 142 (55.0 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 45/133 (33%), Positives = 58/133 (43%)

Query:    13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT------SDYYSIGAEVGRRVSSSDSS 66
             + +  GAD  G  LK  L+  L  L I V DLG        DY      V R+V+     
Sbjct:     4 ISVAIGADHGGYGLKTDLLPFLNQLGIKVLDLGACTYDSADDYPDFALAVARKVACGQ-- 61

Query:    67 ETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
               T RG++ CG+GVG  I ANK  GV A  C     A      ++ NVL +       E 
Sbjct:    62 --TDRGIIICGSGVGACITANKIKGVRAGLCHDVYSAHQGVEHDDMNVLCLGARVIGIEV 119

Query:   127 AVEILDTWLKTPF 139
             A EI+  +L   F
Sbjct:   120 AKEIITAFLNARF 132

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

TIGR_CMR|APH_0642 APH_0642 "ribose 5-phosphate isomerase B" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 140 (54.3 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 40/132 (30%), Positives = 65/132 (49%)

Query:    14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSE 67
             ++   +D  G EL+  L ++LR L  +V D G        DY     +V R VS      
Sbjct:     4 RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSD----- 58

Query:    68 TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
              T+ G++ CGTG+G++I AN++  + A  C +   A  +R  N+ NVL         ++A
Sbjct:    59 -TSFGVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTA 117

Query:   128 VEILDTWLKTPF 139
               +L T++ T F
Sbjct:   118 QSVLYTFMTTAF 129

GO:0004751 "ribose-5-phosphate isomerase activity" evidence=ISS

GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05212	DR102_ARATH	No assigned EC number	0.6980	0.9741	0.9709	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031130001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (301 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021387001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (227 aa)	•								0.526
	GSVIVG00032161001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (428 aa)	•								0.523
	GSVIVG00027807001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (471 aa)	•								0.506
	GSVIVG00026404001	SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (620 aa)	•					•	•		0.485
	GSVIVG00038435001	SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (620 aa)	•					•	•		0.484
	GSVIVG00007751001	SubName- Full=Chromosome undetermined scaffold_200, whole genome shotgun sequence; (518 aa)	•		•						0.479
	GSVIVG00015058001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (516 aa)	•								0.419

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
pfam02502	140	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	3e-41
COG0698	151	COG0698, RpiB, Ribose 5-phosphate isomerase RpiB [	2e-30
PRK05571	148	PRK05571, PRK05571, ribose-5-phosphate isomerase B	4e-28
PTZ00215	151	PTZ00215, PTZ00215, ribose 5-phosphate isomerase;	1e-22
TIGR00689	144	TIGR00689, rpiB_lacA_lacB, sugar-phosphate isomera	1e-21
TIGR01120	143	TIGR01120, rpiB, ribose 5-phosphate isomerase B	9e-19
PRK08622	171	PRK08622, PRK08622, galactose-6-phosphate isomeras	8e-18
TIGR02133	148	TIGR02133, RPI_actino, ribose 5-phosphate isomeras	9e-15
TIGR01119	171	TIGR01119, lacB, galactose-6-phosphate isomerase,	6e-12
PRK12615	171	PRK12615, PRK12615, galactose-6-phosphate isomeras	5e-09
pfam07883	70	pfam07883, Cupin_2, Cupin domain	1e-07
PRK08621	142	PRK08621, PRK08621, galactose-6-phosphate isomeras	8e-07
COG1917	131	COG1917, COG1917, Uncharacterized conserved protei	1e-06
COG0662	127	COG0662, {ManC}, Mannose-6-phosphate isomerase [Ca	4e-06
pfam12973	91	pfam12973, Cupin_7, ChrR Cupin-like domain	2e-05
PRK09273	211	PRK09273, PRK09273, hypothetical protein; Provisio	3e-05

>gnl|CDD|202262 pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase

 Score =  139 bits (354), Expect = 3e-41
 Identities = 50/132 (37%), Positives = 72/132 (54%), Gaps = 9/132 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSET 68
           KI  G+D  G ELK+A+  +L++   +V D+GT      DY     +V   V+S ++   
Sbjct: 1   KIAIGSDHAGFELKEAIKEYLKAKGYEVIDVGTYSGESVDYPDYAIKVAEAVASGEAD-- 58

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
             RG++ CGTG+G++I ANK PG+ A  C  P  A   R  NN NVL +       E A 
Sbjct: 59  --RGILICGTGIGMSIAANKVPGIRAALCHDPFSAELAREHNNANVLCLGARVIGPELAK 116

Query: 129 EILDTWLKTPFK 140
           EI+D +L T F+
Sbjct: 117 EIVDAFLATEFE 128

This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Length = 140

>gnl|CDD|223770 COG0698, RpiB, Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]

 Score =  111 bits (280), Expect = 2e-30
 Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 10/133 (7%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT------SDYYSIGAEVGRRVSSSDSSE 67
           KI  G+D  G ELK+ ++ HL+S   +V D GT       DY     +V   V + ++  
Sbjct: 2   KIAIGSDHAGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEAD- 60

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G++ CGTG+G++I ANK PG+ A     P  A   R  NN NVL +       E A
Sbjct: 61  ---LGILICGTGIGMSIAANKVPGIRAALVSDPTSAKLAREHNNANVLCLGARIIGPELA 117

Query: 128 VEILDTWLKTPFK 140
            +I+D +L+T FK
Sbjct: 118 EDIVDAFLETEFK 130

Length = 151

>gnl|CDD|235509 PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional

 Score =  105 bits (265), Expect = 4e-28
 Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 10/132 (7%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSE 67
           KI  G+D  G ELK+ ++ HL  L  +V DLG        DY     +V   V +     
Sbjct: 2   KIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVA----G 57

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
              RG++ CGTG+G++I ANK  G+ A  C     A   R  NN NVLA+       E A
Sbjct: 58  EADRGILICGTGIGMSIAANKVKGIRAALCHDTYSAHLAREHNNANVLALGARVIGPELA 117

Query: 128 VEILDTWLKTPF 139
            +I+D +L T F
Sbjct: 118 KDIVDAFLATEF 129

Length = 148

>gnl|CDD|185516 PTZ00215, PTZ00215, ribose 5-phosphate isomerase; Provisional

 Score = 91.6 bits (228), Expect = 1e-22
 Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 11/137 (8%)

Query: 12  PLKIIAGADSFGAELKDALVSHLR--SLNIDVEDLGTS-----DYYSIGAEVGRRVSSSD 64
             K+  G+D  G +LK+ ++ +++       +ED+GT      DY     +V   V   +
Sbjct: 2   QKKVAIGSDHAGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLKGE 61

Query: 65  SSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
           +      G++ CG+G+G++I ANK  G+    C     A  +R  NN NVLA  G +T  
Sbjct: 62  A----DTGILVCGSGIGISIAANKVKGIRCALCHDHYTARMSRQHNNANVLAFGGRTTGI 117

Query: 125 ESAVEILDTWLKTPFKA 141
           E A EI+DT+L TPF+ 
Sbjct: 118 EVAKEIIDTFLSTPFEG 134

Length = 151

>gnl|CDD|129772 TIGR00689, rpiB_lacA_lacB, sugar-phosphate isomerase, RpiB/LacA/LacB family

 Score = 88.6 bits (220), Expect = 1e-21
 Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 9/132 (6%)

Query: 15  IIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSETT 69
           I  G+D  G ELK  ++ HL+    +V D GT      DY      V  +V + + S   
Sbjct: 1   IAIGSDHAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVAGEVS--- 57

Query: 70  TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVE 129
             G++ CGTG+G++I ANK  G+ A  C+    A   R  N+ NVL +       E A+ 
Sbjct: 58  -LGILICGTGIGMSIAANKFKGIRAALCVDEYTAALARQHNDANVLCLGSRVVGVELALS 116

Query: 130 ILDTWLKTPFKA 141
           I+D +L T F+ 
Sbjct: 117 IVDAFLTTQFEG 128

Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to complete the pentose phosphate pathway. Length = 144

>gnl|CDD|130190 TIGR01120, rpiB, ribose 5-phosphate isomerase B

 Score = 80.7 bits (199), Expect = 9e-19
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 9/132 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSET 68
           KI  G+D  G  LK+ + + L    + V D GT     +DY     +V   V+  +    
Sbjct: 1   KIAIGSDHAGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGGEVD-- 58

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTG+G++I ANK  G+ A  C  P  A  +R  N+ NVL +       E A 
Sbjct: 59  --GGILICGTGIGMSIAANKFAGIRAALCSEPYMAQMSRLHNDANVLCLGERVVGLELAK 116

Query: 129 EILDTWLKTPFK 140
            I+D WL T F+
Sbjct: 117 SIVDAWLGTQFE 128

Involved in the non-oxidative branch of the pentose phospate pathway [Energy metabolism, Pentose phosphate pathway]. Length = 143

>gnl|CDD|181506 PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed

 Score = 78.9 bits (195), Expect = 8e-18
 Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 9/133 (6%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSI-GAEVGRRVSSSDSSE 67
           +KI  G D    + K A+  +L+S   +V D+GT D+    Y I G +VG  V+S ++  
Sbjct: 1   MKIAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVASGEAD- 59

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+  CGTGVG++   NK PG+ +        AL  +   N NV+   G  T +   
Sbjct: 60  ---LGVCICGTGVGISNAVNKVPGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLM 116

Query: 128 VEILDTWLKTPFK 140
            +I+D ++   +K
Sbjct: 117 CDIIDAFINAEYK 129

Length = 171

>gnl|CDD|211716 TIGR02133, RPI_actino, ribose 5-phosphate isomerase

 Score = 69.8 bits (171), Expect = 9e-15
 Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLG------TSDYYSIGAEVGRRVSSSDSS 66
           ++++ G D  G E K+AL   L     +V D+G        DY          V+   + 
Sbjct: 1   MRVVLGHDHAGFEYKEALWLDLAGHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAAD 60

Query: 67  ETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
                G+V  G+G G AI ANK  G  A      A A   R  NN NV+         E 
Sbjct: 61  ----LGIVIGGSGNGEAIAANKVKGARAALAWDTASAGRARLHNNANVVGAGMRMHGLEE 116

Query: 127 AVEILDTWLKTPFKA 141
           A  ++  +L   F A
Sbjct: 117 AFRLVFEFLPFEFDA 131

This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family. Length = 148

>gnl|CDD|130189 TIGR01119, lacB, galactose-6-phosphate isomerase, LacB subunit

 Score = 62.7 bits (152), Expect = 6e-12
 Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 9/133 (6%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY----YSI-GAEVGRRVSSSDSSE 67
           +KI  G D    ++K  +   L+S   +V D+GT D+    Y I G +VG  V S ++  
Sbjct: 1   MKIAIGCDHIVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEAD- 59

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+  CGTGVG+    NK PGV +        AL  +   N NV+   G    K   
Sbjct: 60  ---LGVCICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEELNANVIGFGGAIIGKLLM 116

Query: 128 VEILDTWLKTPFK 140
            +I+D ++K  +K
Sbjct: 117 FDIIDAFIKAEYK 129

This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 171

>gnl|CDD|171610 PRK12615, PRK12615, galactose-6-phosphate isomerase subunit LacB; Reviewed

 Score = 54.3 bits (130), Expect = 5e-09
 Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 1/129 (0%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEV-GRRVSSSDSSETTTR 71
           +KI  G D      K A+   L+S   DV D GT D+      + G++V  +  +     
Sbjct: 1   MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVNGQADL 60

Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G+  CGTGVG+    NK PG+ +        AL  +   N NV+   G  T +    +I+
Sbjct: 61  GVCICGTGVGINNAVNKVPGIRSALVRDMTTALYAKEELNANVIGFGGKITGELLMCDII 120

Query: 132 DTWLKTPFK 140
           D ++K  +K
Sbjct: 121 DAFIKAEYK 129

Length = 171

>gnl|CDD|219618 pfam07883, Cupin_2, Cupin domain

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
            +V    G   P H H       VLEG+  +     GE   L  GD ++ PAG  HR +
Sbjct: 1   GLVTLPPGESSPPHRHPGEEFFYVLEGEGELT--VDGEEVVLKAGDSVYFPAGVPHRFR 57

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). Length = 70

>gnl|CDD|181505 PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDL---GTSDYYSIGAEVGRRVSSSDSSETT 69
           + II GAD  G ELK+ +  +L     +V D+   G  D+      V + V+ S+ +   
Sbjct: 1   MAIIIGADKAGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNKSEDN--- 57

Query: 70  TRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVE 129
             G+V    G G  + A K  G+ A        A  TR  NN  ++ +         A  
Sbjct: 58  -LGIVIDAYGAGSFMVATKIKGMVAAEVSDERSAYMTRGHNNARMITMGSEIVGDGLAKN 116

Query: 130 ILDTWLKT 137
           I+  +++ 
Sbjct: 117 IIKGFVEG 124

Length = 142

>gnl|CDD|224829 COG1917, COG1917, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 161 KSMTEMPLIGKNDKLDSDSSGSTCSICCLVKNRELNPVEMIPGGSMKIIRESPTSAIVRF 220
                  +       DS   G   S   +VK+R L   E   G ++ ++        V F
Sbjct: 1   AEAMAAKVFEHGSAADSAVPGPLFSGVAVVKSRVLPRNE---GENLSVVL-------VTF 50

Query: 221 KAGSVEPAHHHTFG-HDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           + G+V P H H  G   + VLEG+ +V    +GE+ +L  GD +  P G VH +K
Sbjct: 51  EPGAVIPWHTHPLGEQTIYVLEGEGTVQ--LEGEKKELKAGDVIIIPPGVVHGLK 103

Length = 131

>gnl|CDD|223734 COG0662, {ManC}, Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 25/119 (21%), Positives = 38/119 (31%), Gaps = 9/119 (7%)

Query: 188 CLVKNRELNPVEMIPGGSMKIIRESPTS----AIVRFKAGSVEPAHHHTFGHDLVVLEGK 243
              +    +  E  P GS  ++           +V+         HHH   H   VLEG 
Sbjct: 9   NFSERDGSHRAEFRPWGSYTVLDAGDRYSIARILVKPGEEISLHHHHHRDEH-WYVLEGT 67

Query: 244 KSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET--EFFIKWDGRWDMFFDEDLETA 300
             V     GE  ++  GD ++ PAG  HRV+   +            +    D      
Sbjct: 68  GKVTI--GGEEVEVKAGDSVYIPAGTPHRVRNTGKIPLVLIEVQSPPYLGEDDIVRTED 124

Length = 127

>gnl|CDD|193446 pfam12973, Cupin_7, ChrR Cupin-like domain

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 213 PTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR 272
             +++VR+  GS  P H H  G +++VLEG   V+     E  D   G YL  P G  H 
Sbjct: 24  RATSLVRYAPGSRFPPHRHPGGEEILVLEG---VF---SDEHGDYPAGSYLRNPPGSSHA 77

Query: 273 VKYYEETEFFIK 284
               E    F+K
Sbjct: 78  PFSEEGCTIFVK 89

Members of this family are part of the cupin superfamily. This family includes the transcriptional activator ChrR. Length = 91

>gnl|CDD|181746 PRK09273, PRK09273, hypothetical protein; Provisional

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 76  CGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLA 116
           CGTG G  +  N  PGV    C+ P DA     INN N L+
Sbjct: 71  CGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQINNGNALS 111

Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
PRK12613	141	galactose-6-phosphate isomerase subunit LacA; Prov	100.0
TIGR01118	141	lacA galactose-6-phosphate isomerase, LacA subunit	100.0
PRK08621	142	galactose-6-phosphate isomerase subunit LacA; Revi	100.0
PRK05571	148	ribose-5-phosphate isomerase B; Provisional	100.0
PRK08622	171	galactose-6-phosphate isomerase subunit LacB; Revi	100.0
PTZ00215	151	ribose 5-phosphate isomerase; Provisional	100.0
TIGR01119	171	lacB galactose-6-phosphate isomerase, LacB subunit	100.0
TIGR01120	143	rpiB ribose 5-phosphate isomerase B. Involved in t	100.0
PRK12615	171	galactose-6-phosphate isomerase subunit LacB; Revi	100.0
TIGR02133	148	RPI_actino ribose 5-phosphate isomerase. This fami	100.0
TIGR00689	144	rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/La	100.0
COG0698	151	RpiB Ribose 5-phosphate isomerase RpiB [Carbohydra	100.0
PF02502	140	LacAB_rpiB: Ribose/Galactose Isomerase; InterPro:	100.0
PRK09273	211	hypothetical protein; Provisional	100.0
PF07883	71	Cupin_2: Cupin domain; InterPro: IPR013096 This fa	99.44
PRK09943	185	DNA-binding transcriptional repressor PuuR; Provis	99.41
PRK13290	125	ectC L-ectoine synthase; Reviewed	99.25
COG0662	127	{ManC} Mannose-6-phosphate isomerase [Carbohydrate	99.22
COG1917	131	Uncharacterized conserved protein, contains double	99.22
TIGR01479	468	GMP_PMI mannose-1-phosphate guanylyltransferase/ma	99.07
PF01050	151	MannoseP_isomer: Mannose-6-phosphate isomerase; In	99.07
PRK15460	478	cpsB mannose-1-phosphate guanyltransferase; Provis	99.05
PF12973	91	Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_	99.02
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.97
smart00835	146	Cupin_1 Cupin. This family represents the conserve	98.95
PRK11171	266	hypothetical protein; Provisional	98.95
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.93
COG3837	161	Uncharacterized conserved protein, contains double	98.89
PRK11171	266	hypothetical protein; Provisional	98.87
TIGR03214	260	ura-cupin putative allantoin catabolism protein. T	98.86
TIGR03404	367	bicupin_oxalic bicupin, oxalate decarboxylase fami	98.81
TIGR03037	159	anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase	98.79
PRK13264	177	3-hydroxyanthranilate 3,4-dioxygenase; Provisional	98.77
PF00190	144	Cupin_1: Cupin; InterPro: IPR006045 This family re	98.72
PF02311	136	AraC_binding: AraC-like ligand binding domain; Int	98.72
COG4101	142	Predicted mannose-6-phosphate isomerase [Carbohydr	98.71
PRK04190	191	glucose-6-phosphate isomerase; Provisional	98.63
PF02041	167	Auxin_BP: Auxin binding protein; InterPro: IPR0005	98.55
COG2140	209	Thermophilic glucose-6-phosphate isomerase and rel	98.46
PRK15457	233	ethanolamine utilization protein EutQ; Provisional	98.46
PRK10371	302	DNA-binding transcriptional regulator MelR; Provis	98.37
TIGR02451	215	anti_sig_ChrR anti-sigma factor, putative, ChrR fa	98.36
PRK13501	290	transcriptional activator RhaR; Provisional	98.19
PRK10296	278	DNA-binding transcriptional regulator ChbR; Provis	98.15
PRK13500	312	transcriptional activator RhaR; Provisional	98.1
PRK13502	282	transcriptional activator RhaR; Provisional	98.06
COG3257	264	GlxB Uncharacterized protein, possibly involved in	98.06
PF11699	85	CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.	98.03
TIGR02297	287	HpaA 4-hydroxyphenylacetate catabolism regulatory	98.02
PLN00212	493	glutelin; Provisional	97.95
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	97.92
PRK13503	278	transcriptional activator RhaS; Provisional	97.91
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.83
PF06052	151	3-HAO: 3-hydroxyanthranilic acid dioxygenase; Inte	97.68
PF14499	251	DUF4437: Domain of unknown function (DUF4437); PDB	97.65
TIGR02272	335	gentisate_1_2 gentisate 1,2-dioxygenase. This fami	97.64
PF03079	157	ARD: ARD/ARD' family; InterPro: IPR004313 The two	97.62
PF06249	152	EutQ: Ethanolamine utilisation protein EutQ; Inter	97.6
PF05523	131	FdtA: WxcM-like, C-terminal ; InterPro: IPR008894	97.54
PF06339	126	Ectoine_synth: Ectoine synthase; InterPro: IPR0104	97.5
PF05899	74	Cupin_3: Protein of unknown function (DUF861); Int	97.42
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	97.35
COG4766	176	EutQ Ethanolamine utilization protein [Amino acid	97.26
PF06560	182	GPI: Glucose-6-phosphate isomerase (GPI); InterPro	97.1
PLN00212	493	glutelin; Provisional	97.01
COG1791	181	Uncharacterized conserved protein, contains double	96.95
COG3435	351	Gentisate 1,2-dioxygenase [Secondary metabolites b	96.8
COG3806	216	ChrR Transcriptional activator [Transcription]	96.78
COG3257	264	GlxB Uncharacterized protein, possibly involved in	96.52
PF02678	107	Pirin: Pirin; InterPro: IPR003829 This entry repre	96.34
COG3822	225	ABC-type sugar transport system, auxiliary compone	96.33
COG4297	163	Uncharacterized protein containing double-stranded	96.33
PRK10572	290	DNA-binding transcriptional regulator AraC; Provis	96.18
KOG2107	179	consensus Uncharacterized conserved protein, conta	96.16
PF05995	175	CDO_I: Cysteine dioxygenase type I; InterPro: IPR0	95.95
COG3450	116	Predicted enzyme of the cupin superfamily [General	95.94
PF09313	82	DUF1971: Domain of unknown function (DUF1971); Int	95.85
PF05726	104	Pirin_C: Pirin C-terminal cupin domain; InterPro:	95.81
COG1741	276	Pirin-related protein [General function prediction	95.46
PF08007	319	Cupin_4: Cupin superfamily protein; InterPro: IPR0	95.31
PRK09685	302	DNA-binding transcriptional activator FeaR; Provis	94.36
PF12852	186	Cupin_6: Cupin	94.25
PF14272	115	Gly_rich_SFCGS: Glycine-rich SFCGS	94.23
COG1898	173	RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and rela	94.21
PF13621	251	Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XU	93.89
PF04209	424	HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR	93.75
PRK02261	137	methylaspartate mutase subunit S; Provisional	93.61
TIGR01221	176	rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This en	93.39
PF00908	176	dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimer	93.11
PF02373	114	JmjC: JmjC domain, hydroxylase; InterPro: IPR01312	92.98
PF07385	225	DUF1498: Protein of unknown function (DUF1498); In	92.75
PF04962	261	KduI: KduI/IolB family; InterPro: IPR021120 The Kd	92.59
PHA00672	152	hypothetical protein	92.58
TIGR03577	115	EF_0830 conserved hypothetical protein EF_0830/AHA	91.93
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	91.88
PF14525	172	AraC_binding_2: AraC-binding-like domain	91.82
PF05118	163	Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxyl	91.77
KOG3995	279	consensus 3-hydroxyanthranilate oxygenase HAAO [Am	91.2
TIGR01015	429	hmgA homogentisate 1,2-dioxygenase. Missing in hum	91.01
COG2850	383	Uncharacterized conserved protein [Function unknow	89.82
TIGR01501	134	MthylAspMutase methylaspartate mutase, S subunit.	89.65
KOG2757	411	consensus Mannose-6-phosphate isomerase [Carbohydr	89.26
PRK05341	438	homogentisate 1,2-dioxygenase; Provisional	88.73
PF11142	63	DUF2917: Protein of unknown function (DUF2917); In	88.64
PRK12335	287	tellurite resistance protein TehB; Provisional	88.43
PF07847	200	DUF1637: Protein of unknown function (DUF1637); In	88.42
COG1482	312	ManA Phosphomannose isomerase [Carbohydrate transp	88.18
PRK15131	389	mannose-6-phosphate isomerase; Provisional	87.95
PLN02658	435	homogentisate 1,2-dioxygenase	87.33
PLN02288	394	mannose-6-phosphate isomerase	86.93
PF02302	90	PTS_IIB: PTS system, Lactose/Cellobiose specific I	86.86
cd05564	96	PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lic	85.22
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	83.38
PF06865	94	DUF1255: Protein of unknown function (DUF1255); In	83.26
PF03698	80	UPF0180: Uncharacterised protein family (UPF0180);	83.08
PRK10579	94	hypothetical protein; Provisional	83.02
PRK09590	104	celB cellobiose phosphotransferase system IIB comp	82.24
PRK00924	276	5-keto-4-deoxyuronate isomerase; Provisional	82.13
cd05568	85	PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosph	81.68
COG3508	427	HmgA Homogentisate 1,2-dioxygenase [Secondary meta	81.64
PF02878	137	PGM_PMM_I: Phosphoglucomutase/phosphomannomutase,	81.55
PRK10310	94	PTS system galactitol-specific transporter subunit	81.48
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	81.48
cd05566	89	PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB	81.25
TIGR00218	302	manA mannose-6-phosphate isomerase, class I. The n	80.71
PF06719	155	AraC_N: AraC-type transcriptional regulator N-term	80.66
PRK03094	80	hypothetical protein; Provisional	80.64

>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional

Probab=100.00  E-value=9.6e-57  Score=377.77  Aligned_cols=137  Identities=23%  Similarity=0.319  Sum_probs=132.8

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC--CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCC
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS--DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNP   90 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~--~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~   90 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|++  |||++|.+||++|.+    ++++|||+|||||+||||+|||+|
T Consensus         1 MkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~dypd~a~~va~~V~~----~e~~~GIliCGtGiG~siaANKv~   76 (141)
T PRK12613          1 MAIILGADAHGNALKELIKSFLQEEGYDIIDVTDINSDFIDNTLAVAKAVNE----AEGRLGIMVDAYGAGPFMVATKLK   76 (141)
T ss_pred             CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCChHHHHHHHHHHHHc----CCCceEEEEcCCCHhHhhhhhcCC
Confidence            89999999999999999999999999999999984  799999999999998    999999999999999999999999


Q ss_pred             ceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHh
Q 021698           91 GVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSC  157 (309)
Q Consensus        91 giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~  157 (309)
                      |||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    ++++++++.|.+
T Consensus        77 GIRaA~~~d~~~A~~ar~hNnaNVl~lG~r~ig~~~a~~iv~~fL~t~f~g----grh~~Rv~~i~~  139 (141)
T PRK12613         77 GMVAAEVSDERSAYMTRGHNNARMITMGAEIVGPELAKNIAKGFVTGPYDG----GRHQIRVDMLNK  139 (141)
T ss_pred             CeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999997    799988888765

>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit

Probab=100.00  E-value=9.4e-57  Score=377.84  Aligned_cols=137  Identities=23%  Similarity=0.331  Sum_probs=132.4

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC---CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCC
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT---SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKN   89 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~---~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~   89 (309)
                      |||+|||||+||+||++|++||+++||||+|+|+   .|||++|.+||+.|++    ++++|||||||||+||||+|||+
T Consensus         1 MkI~IgsDh~G~~lK~~i~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~----~e~~~GIliCGtGiG~siaANK~   76 (141)
T TIGR01118         1 MAIIIGSDLAGKRLKDVIKNFLVDNGFEVIDVTEGDGQDFVDVTLAVASEVQK----DEQNLGIVIDAYGAGSFMVATKI   76 (141)
T ss_pred             CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCcHHHHHHHHHHHHc----CCCceEEEEcCCCHhHhhhhhcC
Confidence            8999999999999999999999999999999998   3799999999999998    99999999999999999999999


Q ss_pred             CceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHh
Q 021698           90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSC  157 (309)
Q Consensus        90 ~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~  157 (309)
                      ||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    ++++++++.|.+
T Consensus        77 ~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~~g~~~a~~iv~~fL~t~f~g----grh~~Rv~~i~~  140 (141)
T TIGR01118        77 KGMIAAEVSDERSAYMTRGHNNARMITVGAEIVGDELAKNIVKAFVEGKYDG----GRHQIRVDMLNK  140 (141)
T ss_pred             CCeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999997    799988887764

This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.

>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed

Probab=100.00  E-value=1.5e-56  Score=377.08  Aligned_cols=137  Identities=23%  Similarity=0.305  Sum_probs=132.8

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC---CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCC
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS---DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKN   89 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~---~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~   89 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|++   |||++|.+||++|.+    +++++||||||||+||||+||||
T Consensus         1 mkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGTGiG~siaANK~   76 (142)
T PRK08621          1 MAIIIGADKAGFELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKEVNK----SEDNLGIVIDAYGAGSFMVATKI   76 (142)
T ss_pred             CEEEEEeCcchHHHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHHHHc----CCCceEEEEcCCChhhhhhhhcC
Confidence            89999999999999999999999999999999983   799999999999998    99999999999999999999999


Q ss_pred             CceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHh
Q 021698           90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSC  157 (309)
Q Consensus        90 ~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~  157 (309)
                      ||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    ++++++++.|..
T Consensus        77 ~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~iv~~fL~t~f~g----grh~~Rv~ki~~  140 (142)
T PRK08621         77 KGMVAAEVSDERSAYMTRGHNNARMITMGSEIVGDGLAKNIIKGFVEGKYDG----GRHQIRVDMLNK  140 (142)
T ss_pred             CCeEEEEECCHHHHHHHHHHcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999997    799988888775

>PRK05571 ribose-5-phosphate isomerase B; Provisional

Probab=100.00  E-value=7.4e-56  Score=376.08  Aligned_cols=138  Identities=36%  Similarity=0.557  Sum_probs=133.3

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecC---C---CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhh
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT---S---DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFA   86 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~---~---~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~a   86 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|+   +   |||++|.+||++|.+    |+++|||||||||+||||+|
T Consensus         1 mkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGtGiG~siaA   76 (148)
T PRK05571          1 MKIAIGSDHAGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVA----GEADRGILICGTGIGMSIAA   76 (148)
T ss_pred             CEEEEEeCCchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHH
Confidence            8999999999999999999999999999999998   3   699999999999998    99999999999999999999


Q ss_pred             cCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698           87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF  158 (309)
Q Consensus        87 NK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~  158 (309)
                      |||||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++    ++++++++.|..+
T Consensus        77 NK~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~iv~~fl~t~F~g----grh~~Rv~ki~~~  144 (148)
T PRK05571         77 NKVKGIRAALCHDTYSAHLAREHNNANVLALGARVIGPELAKDIVDAFLATEFEG----GRHQRRIDKIDEY  144 (148)
T ss_pred             hcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----CcHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999996    7999998888764

>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed

Probab=100.00  E-value=4.2e-55  Score=377.62  Aligned_cols=141  Identities=30%  Similarity=0.428  Sum_probs=134.4

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN   87 (309)
                      |||+|||||+||+||+.|++||+++||+|+|+|++     |||++|.+||++|.+    |+++|||||||||+||||+||
T Consensus         1 MkI~IgsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN   76 (171)
T PRK08622          1 MKIAIGCDHIVTDEKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVAS----GEADLGVCICGTGVGISNAVN   76 (171)
T ss_pred             CEEEEEeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCcEEEEEcCCcHHHHHHHh
Confidence            89999999999999999999999999999999984     699999999999998    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhh
Q 021698           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFD  160 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~  160 (309)
                      ||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++   .+++.++++.|..+-.
T Consensus        77 Kv~GIRAA~~~d~~sA~~aR~hNnaNVL~lG~r~ig~~~a~~iv~~fL~t~F~g---ggrh~~Rv~ki~~~e~  146 (171)
T PRK08622         77 KVPGIRSALVRDMTSALYAKEELNANVIGFGGKITGELLMCDIIDAFINAEYKP---TEENKKLIEKIDHLEK  146 (171)
T ss_pred             cCCCeEEEEeCCHHHHHHHHHhcCCcEEEEChhhcCHHHHHHHHHHHHcCCCCC---CChHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999994   4789988888876443

>PTZ00215 ribose 5-phosphate isomerase; Provisional

Probab=100.00  E-value=5.4e-55  Score=371.68  Aligned_cols=140  Identities=34%  Similarity=0.546  Sum_probs=134.5

Q ss_pred             CCcEEEEEeCcccHHHHHHHHHHHHh--CCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhh
Q 021698           11 HPLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVA   83 (309)
Q Consensus        11 ~~mkI~ig~D~~g~~lk~~l~~~l~~--~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~   83 (309)
                      +.|||+|||||+||+||++|++||++  +||||+|+|++     |||++|.+||++|.+    ++++|||+|||||+||+
T Consensus         1 ~~mkI~igsDhaG~~lK~~l~~~L~~~~~g~eV~D~G~~~~~~~dYp~~a~~va~~V~~----~~~~~GIliCGtGiG~s   76 (151)
T PTZ00215          1 MQKKVAIGSDHAGFDLKNEIIDYIKNKGKEYKIEDMGTYTAESVDYPDFAEKVCEEVLK----GEADTGILVCGSGIGIS   76 (151)
T ss_pred             CCcEEEEEeCCchHHHHHHHHHHHHhccCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhc----CCCcEEEEEcCCcHHHH
Confidence            36899999999999999999999999  99999999984     699999999999998    99999999999999999


Q ss_pred             hhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698           84 IFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF  158 (309)
Q Consensus        84 i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~  158 (309)
                      |+||||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    ++++++++.|..+
T Consensus        77 iaANK~~GIRAa~~~d~~~A~~ar~hNnaNVL~lGar~ig~~~a~~iv~~fL~t~F~g----grh~~Rv~~i~~~  147 (151)
T PTZ00215         77 IAANKVKGIRCALCHDHYTARMSRQHNNANVLAFGGRTTGIEVAKEIIDTFLSTPFEG----GRHTERIDKISAI  147 (151)
T ss_pred             HHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999996    7999888887754

>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit

Probab=100.00  E-value=6.4e-55  Score=376.84  Aligned_cols=141  Identities=30%  Similarity=0.428  Sum_probs=134.6

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN   87 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|++     |||++|.+||++|.+    ++++|||||||||+||||+||
T Consensus         1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGTGiG~siaAN   76 (171)
T TIGR01119         1 MKIAIGCDHIVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVS----GEADLGVCICGTGVGINNAVN   76 (171)
T ss_pred             CEEEEEeCCchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHHh
Confidence            89999999999999999999999999999999984     599999999999998    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhh
Q 021698           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFD  160 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~  160 (309)
                      ||||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++   .++++++++.|..+-.
T Consensus        77 Kv~GIRAAl~~d~~sA~~ar~hNnaNVL~lGarvig~e~a~~Iv~~fL~t~Feg---ggrh~~Rv~ki~~~e~  146 (171)
T TIGR01119        77 KVPGVRSALVRDMTSALYAKEELNANVIGFGGAIIGKLLMFDIIDAFIKAEYKP---TEENKKLIAKIKHLET  146 (171)
T ss_pred             cCCCeEEEEeCCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC---CCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999994   4799988888886543

This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.

>TIGR01120 rpiB ribose 5-phosphate isomerase B

Probab=100.00  E-value=6.3e-55  Score=368.42  Aligned_cols=136  Identities=33%  Similarity=0.477  Sum_probs=130.8

Q ss_pred             EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcC
Q 021698           14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANK   88 (309)
Q Consensus        14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK   88 (309)
                      ||+|||||+||+||+.|++||+++||||+|+|++     |||++|.+||++|.+    ++++|||||||||+||||+|||
T Consensus         1 kI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGtGiG~siaANK   76 (143)
T TIGR01120         1 KIAIGSDHAGFILKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAG----GEVDGGILICGTGIGMSIAANK   76 (143)
T ss_pred             CEEEEeCcchHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHC----CCCceEEEEcCCcHHHHHHHhc
Confidence            6999999999999999999999999999999983     699999999999998    9999999999999999999999


Q ss_pred             CCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHh
Q 021698           89 NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSC  157 (309)
Q Consensus        89 ~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~  157 (309)
                      +||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++    ++++++++.|..
T Consensus        77 ~~GIraa~~~d~~~A~~ar~hNnaNvl~lG~r~~g~~~a~~iv~~fl~t~f~g----grh~~Rv~~i~~  141 (143)
T TIGR01120        77 FAGIRAALCSEPYMAQMSRLHNDANVLCLGERVVGLELAKSIVDAWLGTQFEG----GRHQQRVEAITA  141 (143)
T ss_pred             CCCeEEEEECCHHHHHHHHHhcCCcEEEECcceeCHHHHHHHHHHHHcCCCCC----CccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999997    688888887764

Involved in the non-oxidative branch of the pentose phospate pathway.

>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed

Probab=100.00  E-value=1.3e-54  Score=375.01  Aligned_cols=139  Identities=30%  Similarity=0.429  Sum_probs=133.8

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN   87 (309)
                      |||+|||||+||+||+.|++||+++||+|+|+|++     |||++|.+||++|.+    ++++|||||||||+||||+||
T Consensus         1 MkI~igsDhaG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN   76 (171)
T PRK12615          1 MKIAIGCDHIVTNEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAVVN----GQADLGVCICGTGVGINNAVN   76 (171)
T ss_pred             CEEEEEeCchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHHh
Confidence            89999999999999999999999999999999984     699999999999998    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF  158 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~  158 (309)
                      ||||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++   .+++.++++.|..+
T Consensus        77 K~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r~ig~~~a~~Iv~~fL~t~F~g---ggrh~~Rv~ki~~~  144 (171)
T PRK12615         77 KVPGIRSALVRDMTTALYAKEELNANVIGFGGKITGELLMCDIIDAFIKAEYKE---TEENKKLIAKIAHL  144 (171)
T ss_pred             cCCCeEEEEeCCHHHHHHHHHhcCCcEEEEChhhcCHHHHHHHHHHHHcCCCCC---CCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999994   37999888888864

>TIGR02133 RPI_actino ribose 5-phosphate isomerase

Probab=100.00  E-value=4.2e-54  Score=365.81  Aligned_cols=139  Identities=29%  Similarity=0.339  Sum_probs=132.9

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhh
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFA   86 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~a   86 (309)
                      |||+|||||+||+||+.|++||+++||+|+|+|++      |||++|.+||++|.+    +++++||||||||+||||+|
T Consensus         1 MkI~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~----~~~~~GIliCGtGiG~siaA   76 (148)
T TIGR02133         1 MRVVLGHDHAGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVAR----DAADLGIVIGGSGNGEAIAA   76 (148)
T ss_pred             CEEEEEeCchhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhc----CCCceEEEEcCCChhheeee
Confidence            89999999999999999999999999999999982      599999999999998    99999999999999999999


Q ss_pred             cCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698           87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF  158 (309)
Q Consensus        87 NK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~  158 (309)
                      ||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++   .++++.+++.|.++
T Consensus        77 NK~~GiRAA~~~d~~sA~~ar~hNnaNVl~lG~r~ig~~~a~~iv~~fl~t~f~~---ggrh~~Rv~~i~~~  145 (148)
T TIGR02133        77 NKVKGARAALAWDTASAGRARLHNNANVVGAGMRMHGLEEAFRLVFEFLGFEFDA---RSRHARRIDSISEY  145 (148)
T ss_pred             cccCCeEEEEECCHHHHHHHHHHcCCcEEEECCcccCHHHHHHHHHHHHCCCCCC---CCchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999984   36899888887764

This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.

>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family

Probab=100.00  E-value=3.9e-54  Score=364.00  Aligned_cols=136  Identities=32%  Similarity=0.502  Sum_probs=131.2

Q ss_pred             EEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCC
Q 021698           15 IIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKN   89 (309)
Q Consensus        15 I~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~   89 (309)
                      |+|||||+||+||+.|++||+++||||+|+|++     |||++|.+||++|.+    |+++|||+|||||+||||+||||
T Consensus         1 I~igsDhaG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~~~GIliCGtGiG~siaANK~   76 (144)
T TIGR00689         1 IAIGSDHAGLELKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVVA----GEVSLGILICGTGIGMSIAANKF   76 (144)
T ss_pred             CEEeeCcchHHHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHHc----CCCceEEEEcCCcHHHHHHHhcC
Confidence            789999999999999999999999999999983     699999999999998    99999999999999999999999


Q ss_pred             CceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698           90 PGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF  158 (309)
Q Consensus        90 ~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~  158 (309)
                      ||||||+|+|+++|+|+|+|||+||||||+|++|+++|++|+++||+|+|++    ++++++++.|..+
T Consensus        77 ~GIraa~~~d~~~A~~ar~hNnaNVl~lGar~ig~~~a~~iv~~fL~t~f~g----grh~~Rv~~i~~~  141 (144)
T TIGR00689        77 KGIRAALCVDEYTAALARQHNDANVLCLGSRVVGVELALSIVDAFLTTQFEG----GRHQRRIDKIIEY  141 (144)
T ss_pred             CCeEEEEECCHHHHHHHHHhcCCcEEEECccccCHHHHHHHHHHHHcCCCCC----CcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999997    7999988888764

Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.

>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.9e-53  Score=359.52  Aligned_cols=142  Identities=35%  Similarity=0.533  Sum_probs=134.0

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhh
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFA   86 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~a   86 (309)
                      |||+|||||+|++||+.|++||+++||||+|+|++      +||+|+.+||+.|.+    ++.||||++||||+||+|+|
T Consensus         1 MkIaig~Dhag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~----~~~d~GIliCGTGiG~~iaA   76 (151)
T COG0698           1 MKIAIGSDHAGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLN----GEADLGILICGTGIGMSIAA   76 (151)
T ss_pred             CcEEEEcCcccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHc----CCCCeeEEEecCChhHHHHh
Confidence            89999999999999999999999999999999985      599999999999998    89999999999999999999


Q ss_pred             cCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhh
Q 021698           87 NKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDK  161 (309)
Q Consensus        87 NK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~  161 (309)
                      ||+||||||+|+|+++|+|||+|||+||||||+|++|+++|+.|+|+||+++|.   +.++++.+.+.|.++...
T Consensus        77 NKv~GiraAl~~D~~sA~~ar~hNnaNvl~~G~riig~~lA~~ivd~fl~~~f~---~ggrh~~Rv~~i~~~~~~  148 (151)
T COG0698          77 NKVPGIRAALVSDPTSAKLAREHNNANVLCLGARIIGPELAEDIVDAFLETEFK---EGGRHQRRVDKIAEYERK  148 (151)
T ss_pred             hccCCeEEEEecCHHHHHHHHhcCCCcEEEechhhccHHHHHHHHHHHHhcccc---CCCchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999994   237888888888776543

>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB)

Probab=100.00  E-value=9.9e-54  Score=360.85  Aligned_cols=134  Identities=37%  Similarity=0.564  Sum_probs=123.1

Q ss_pred             EEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCCC-----CcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcC
Q 021698           14 KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSD-----YYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANK   88 (309)
Q Consensus        14 kI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~-----y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK   88 (309)
                      ||+|||||+|++||+.|++||+++||||+|+|+++     ||+++.+||++|++    |+++|||++||||+||+|+|||
T Consensus         1 KI~igsDh~g~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dy~~~a~~va~~V~~----~~~d~GIliCgtGiG~~iaANK   76 (140)
T PF02502_consen    1 KIAIGSDHAGFELKEAIKEYLEEKGYEVIDFGTYSEDSVDYPDFAEKVAEAVAS----GEADRGILICGTGIGMSIAANK   76 (140)
T ss_dssp             EEEEEE-GGGHHHHHHHHHHHHHTTEEEEEESESSTST--HHHHHHHHHHHHHT----TSSSEEEEEESSSHHHHHHHHT
T ss_pred             CEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHc----ccCCeEEEEcCCChhhhhHhhc
Confidence            89999999999999999999999999999999974     99999999999999    9999999999999999999999


Q ss_pred             CCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHH
Q 021698           89 NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKL  155 (309)
Q Consensus        89 ~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I  155 (309)
                      |||||||+|+|+++|+|+|+|||+||||||+|++|++++++|+++||+|+|++    +++++++++|
T Consensus        77 ~~GIrAa~~~d~~~A~~ar~hNdaNVL~lG~~~~~~~~a~~i~~~~l~t~f~~----grh~~Rv~~i  139 (140)
T PF02502_consen   77 VPGIRAALCSDPYSAKMAREHNDANVLCLGARVIGEELAKEIVDAFLNTEFEG----GRHQRRVDKI  139 (140)
T ss_dssp             STT--EEE-SSHHHHHHHHHTT--SEEEEETTTSHHHHHHHHHHHHHHGGHHH----HHHHHHHHHH
T ss_pred             CCCEEEEeeCCHHHHHHHHHhcCCcEEEechhhccHHHHHHHHHHHhCCCCCc----ccHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999996    7777776655

Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....

>PRK09273 hypothetical protein; Provisional

Probab=100.00  E-value=9.9e-45  Score=321.19  Aligned_cols=137  Identities=23%  Similarity=0.274  Sum_probs=129.2

Q ss_pred             cEEEEEeCcccHH----HHHHHHHHHHhCCCcEEEecC-------CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698           13 LKIIAGADSFGAE----LKDALVSHLRSLNIDVEDLGT-------SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG   81 (309)
Q Consensus        13 mkI~ig~D~~g~~----lk~~l~~~l~~~g~~v~d~g~-------~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G   81 (309)
                      |||++-...+.-.    +-++|++||+++||+|+|+|+       .|||++|.+||+.|.+    |+++|||++||||+|
T Consensus         1 mkiali~e~sqa~kn~~i~~~L~~~L~~~G~eV~D~G~~~~~~~s~dYpd~a~~vA~~V~~----g~~d~GIliCGTGiG   76 (211)
T PRK09273          1 MKIALINENSQAAKNAIIYEALKKVADPKGHEVFNYGMYDEEDHQLTYVQNGIMASILLNS----KAVDFVVTGCGTGQG   76 (211)
T ss_pred             CeEEeecccchhhhhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCChHHHHHHHHHHHHc----CCCCEEEEEcCcHHH
Confidence            8999998877663    568899999999999999997       2699999999999998    999999999999999


Q ss_pred             hhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeeccc----ccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhH
Q 021698           82 VAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM----STSKESAVEILDTWLKTPFKAPCPASGLKPWDE  153 (309)
Q Consensus        82 ~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~----~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~  153 (309)
                      |+|+||||||||||+|+|+++|+|+|+|||+||||||+|    |+|+++|++|+++||+++|++|||.++.+|..+
T Consensus        77 ~siAANK~pGIraalc~d~~sA~lar~hNnaNVL~Lg~r~~~g~~g~~~a~~Ive~fl~tef~gGyp~er~~~~~~  152 (211)
T PRK09273         77 AMLALNSFPGVVCGYCIDPTDAYLFAQINNGNALSLPFAKGFGWGAELNLRYIFEKLFTGERGEGYPKERAEPQQR  152 (211)
T ss_pred             HHHHHhcCCCeEEEEeCCHHHHHHHHHhcCCcEEEEcCCcCCCcccHHHHHHHHHHHHcCCccCCCChHHhhHHHh
Confidence            999999999999999999999999999999999999999    999999999999999999999999999998643

>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel)

Probab=99.44  E-value=6.9e-13  Score=97.88  Aligned_cols=67  Identities=27%  Similarity=0.432  Sum_probs=61.6

Q ss_pred             EEEEcCCCcCCccccCcc-EEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698          217 IVRFKAGSVEPAHHHTFG-HDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~~-e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~  285 (309)
                      +++++||+..++|+|+.. |++||++|++++  ..+++.+.+++||++++|++++|++.|.++.++.+++
T Consensus         2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~--~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~~l~   69 (71)
T PF07883_consen    2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTL--TVDGERVELKPGDAIYIPPGVPHQVRNPGDEPARFLV   69 (71)
T ss_dssp             EEEEETTEEEEEEEESSEEEEEEEEESEEEE--EETTEEEEEETTEEEEEETTSEEEEEEESSSEEEEEE
T ss_pred             EEEECCCCCCCCEECCCCCEEEEEEECCEEE--EEccEEeEccCCEEEEECCCCeEEEEECCCCCEEEEE
Confidence            578999999999999998 999999999999  6899999999999999999999999999987776544

; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....

>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional

Probab=99.41  E-value=5.6e-12  Score=111.09  Aligned_cols=140  Identities=16%  Similarity=0.134  Sum_probs=98.6

Q ss_pred             HHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhhhccccccccCCCCCCCCCCCCccceeeeeecCCCCceeecCCceEE
Q 021698          128 VEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSSGSTCSICCLVKNRELNPVEMIPGGSMK  207 (309)
Q Consensus       128 ~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~s~~el~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~pgg~~~  207 (309)
                      ...+..|.+...      .++...+.+|+++|++++.+|+..+.+...+          ..+.+..+.... ...+..++
T Consensus        34 ~~~is~~E~g~~------~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~----------~~v~~~~e~~~~-~~~g~~~~   96 (185)
T PRK09943         34 HSAISTIEQDKV------SPAISTLQKLLKVYGLSLSEFFSEPEKPDEP----------QVVINQDDLIEM-GSQGVSMK   96 (185)
T ss_pred             HHHHHHHHcCCC------CCCHHHHHHHHHHhCCCHHHHccCccccCCc----------ceEEchhHhhcc-ccCCceEE
Confidence            455677776544      4677889999999999999998653211111          013333322111 12344455


Q ss_pred             EeeeCC-C-e---EEEEEcCCCcC-CccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          208 IIRESP-T-S---AIVRFKAGSVE-PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       208 il~~~~-~-~---~~v~l~pG~~~-p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      ++.... . .   .+.+++||... +.|+|+..|++||++|++++  .++++.+.|.+||++++|++++|+++|.++..+
T Consensus        97 ~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~--~~~~~~~~l~~Gd~~~~~~~~~H~~~n~~~~~~  174 (185)
T PRK09943         97 LVHNGNPNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVL--TINGQDYHLVAGQSYAINTGIPHSFSNTSAGIC  174 (185)
T ss_pred             EeccCCCCCeeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEE--EECCEEEEecCCCEEEEcCCCCeeeeCCCCCCe
Confidence            543221 1 1   34577898865 57889999999999999999  689999999999999999999999999988777


Q ss_pred             EEEEc
Q 021698          282 FIKWD  286 (309)
Q Consensus       282 ~i~~~  286 (309)
                      .++|.
T Consensus       175 ~~l~~  179 (185)
T PRK09943        175 RIISA  179 (185)
T ss_pred             EEEEE
Confidence            66664

>PRK13290 ectC L-ectoine synthase; Reviewed

Probab=99.25  E-value=1.7e-10  Score=95.98  Aligned_cols=67  Identities=18%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEE-e-CCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNL-T-KGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~-~-~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ..++++||+..+.|+|...|++|||+|++++  . + +++++.|.|||++++|++.+|+++|.++..++.+
T Consensus        38 ~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~--~~i~~g~~~~L~aGD~i~~~~~~~H~~~N~e~~~~l~v  106 (125)
T PRK13290         38 HETTIYAGTETHLHYKNHLEAVYCIEGEGEV--EDLATGEVHPIRPGTMYALDKHDRHYLRAGEDMRLVCV  106 (125)
T ss_pred             EEEEECCCCcccceeCCCEEEEEEEeCEEEE--EEcCCCEEEEeCCCeEEEECCCCcEEEEcCCCEEEEEE
Confidence            4579999999898988777899999999999  6 6 4999999999999999999999999865555433

>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=99.22  E-value=1.3e-10  Score=96.71  Aligned_cols=84  Identities=30%  Similarity=0.472  Sum_probs=67.6

Q ss_pred             eeecCCceEEEeeeCCC--eEEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEE
Q 021698          198 VEMIPGGSMKIIRESPT--SAIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK  274 (309)
Q Consensus       198 ~~~~pgg~~~il~~~~~--~~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~  274 (309)
                      ....+++.+..+.....  ...+.++||....+|.|. ..|.+||++|++.+  .++++...|++||+++||+|++|+++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v--~~~~~~~~v~~gd~~~iP~g~~H~~~   96 (127)
T COG0662          19 AEFRPWGSYTVLDAGDRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKV--TIGGEEVEVKAGDSVYIPAGTPHRVR   96 (127)
T ss_pred             EEEeCCcceeecccCCcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEE--EECCEEEEecCCCEEEECCCCcEEEE
Confidence            34566777776644333  367889999997665554 58889999999999  78999999999999999999999999


Q ss_pred             EcCCeEEEE
Q 021698          275 YYEETEFFI  283 (309)
Q Consensus       275 n~~d~~~~i  283 (309)
                      |.+..++.+
T Consensus        97 N~G~~~L~l  105 (127)
T COG0662          97 NTGKIPLVL  105 (127)
T ss_pred             cCCCcceEE
Confidence            999876654

>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=99.22  E-value=5.6e-11  Score=98.82  Aligned_cols=63  Identities=37%  Similarity=0.603  Sum_probs=58.6

Q ss_pred             EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          216 AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      ..+.++||+..++|.|+ ..+.+|||+|++++  .++++.+.+++||++++|+|++|++.|.++..
T Consensus        46 ~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~--~~~g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~  109 (131)
T COG1917          46 VLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTV--QLEGEKKELKAGDVIIIPPGVVHGLKAVEDEP  109 (131)
T ss_pred             EEEEECCCcccccccCCCcceEEEEEecEEEE--EecCCceEecCCCEEEECCCCeeeeccCCCCc
Confidence            57899999999999999 77999999999999  56799999999999999999999999999873

>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase

Probab=99.07  E-value=1.1e-09  Score=109.70  Aligned_cols=91  Identities=18%  Similarity=0.177  Sum_probs=75.0

Q ss_pred             eeecCCceEEEeeeCCCe--EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEE
Q 021698          198 VEMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK  274 (309)
Q Consensus       198 ~~~~pgg~~~il~~~~~~--~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~  274 (309)
                      ....|||..+.+......  ..++++||+..+.|.|. ..|.+||++|++++  .++++++.|++||++++|++++|++.
T Consensus       359 ~~~~pWG~~~~~~~~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v--~~dg~~~~l~~GDsi~ip~~~~H~~~  436 (468)
T TIGR01479       359 EVYRPWGKYDSIDQGDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARV--TIGDETLLLTENESTYIPLGVIHRLE  436 (468)
T ss_pred             eEECCCCceEEEecCCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEE--EECCEEEEecCCCEEEECCCCcEEEE
Confidence            345899999888776653  67899999987766554 34556999999999  78999999999999999999999999


Q ss_pred             EcCCeEEEEEEcCCcc
Q 021698          275 YYEETEFFIKWDGRWD  290 (309)
Q Consensus       275 n~~d~~~~i~~~g~~~  290 (309)
                      |.+++++.++|.....
T Consensus       437 N~g~~~~~~i~v~~~~  452 (468)
T TIGR01479       437 NPGKIPLELIEVQSGS  452 (468)
T ss_pred             cCCCCCEEEEEEEcCC
Confidence            9998888777765433

This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.

>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5

Probab=99.07  E-value=1.6e-09  Score=92.99  Aligned_cols=85  Identities=24%  Similarity=0.322  Sum_probs=72.1

Q ss_pred             eecCCceEEEeeeCCCe--EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEE
Q 021698          199 EMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY  275 (309)
Q Consensus       199 ~~~pgg~~~il~~~~~~--~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n  275 (309)
                      ...|||.++++..++..  ..+++.||...++|.|. ..|..+|++|+..+  .++++.+.+.+||+++||+|..|++.|
T Consensus        47 ~~rpWG~~~~l~~~~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v--~~~~~~~~~~~g~sv~Ip~g~~H~i~n  124 (151)
T PF01050_consen   47 VYRPWGSYEVLDEGEGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEV--TLDDEEFTLKEGDSVYIPRGAKHRIEN  124 (151)
T ss_pred             EecCCcEEEEEEccCCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEE--EECCEEEEEcCCCEEEECCCCEEEEEC
Confidence            45799999999877664  67899999999887775 45666789999999  789999999999999999999999999


Q ss_pred             cCCeEEEEEE
Q 021698          276 YEETEFFIKW  285 (309)
Q Consensus       276 ~~d~~~~i~~  285 (309)
                      .+++++.++=
T Consensus       125 ~g~~~L~~IE  134 (151)
T PF01050_consen  125 PGKTPLEIIE  134 (151)
T ss_pred             CCCcCcEEEE
Confidence            9977665443

3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process

>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional

Probab=99.05  E-value=1.2e-09  Score=109.51  Aligned_cols=90  Identities=17%  Similarity=0.151  Sum_probs=72.5

Q ss_pred             eecCCceEEEeeeCCCe--EEEEEcCCCcCCcccc-CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEE
Q 021698          199 EMIPGGSMKIIRESPTS--AIVRFKAGSVEPAHHH-TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY  275 (309)
Q Consensus       199 ~~~pgg~~~il~~~~~~--~~v~l~pG~~~p~H~H-~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n  275 (309)
                      ...|||....+......  ..++++||+..+.|.| ...|..||++|++++  .++++++.|.+||++++|+|.+|+++|
T Consensus       369 ~~rpWG~~~~l~~g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v--~idg~~~~L~~GDSi~ip~g~~H~~~N  446 (478)
T PRK15460        369 VYRPWGKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKV--TIDGDIKLLGENESIYIPLGATHCLEN  446 (478)
T ss_pred             EECCCCceEeecCCCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEE--EECCEEEEecCCCEEEECCCCcEEEEc
Confidence            35788888877555543  6789999987654433 234888999999999  789999999999999999999999999


Q ss_pred             cCCeEEEEEEcCCcc
Q 021698          276 YEETEFFIKWDGRWD  290 (309)
Q Consensus       276 ~~d~~~~i~~~g~~~  290 (309)
                      .++.++.++|...-.
T Consensus       447 ~g~~~l~iI~V~~g~  461 (478)
T PRK15460        447 PGKIPLDLIEVRSGS  461 (478)
T ss_pred             CCCCCEEEEEEEcCC
Confidence            998888777765443

>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A

Probab=99.02  E-value=2.9e-09  Score=83.43  Aligned_cols=79  Identities=30%  Similarity=0.496  Sum_probs=62.9

Q ss_pred             ecCCceEEEeeeCC-----CeEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEE
Q 021698          200 MIPGGSMKIIRESP-----TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK  274 (309)
Q Consensus       200 ~~pgg~~~il~~~~-----~~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~  274 (309)
                      ..||.+++.|...+     ...++++.||+..|.|.|+..|++|||+|++..    +++.  ..+||+++.|+|..|.+.
T Consensus         6 ~~~Gv~~~~L~~~~~~~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~~~--~~~G~~~~~p~g~~h~~~   79 (91)
T PF12973_consen    6 PRPGVSVKPLHRDEGETGERVSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GDGR--YGAGDWLRLPPGSSHTPR   79 (91)
T ss_dssp             CSTTEEEEEEEECSSSTTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TTCE--EETTEEEEE-TTEEEEEE
T ss_pred             CCCCEEEEEeccCCCcccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CCcc--CCCCeEEEeCCCCccccC
Confidence            46788888777554     247899999999999999999999999999886    4444  489999999999999999


Q ss_pred             EcCCeEEEEE
Q 021698          275 YYEETEFFIK  284 (309)
Q Consensus       275 n~~d~~~~i~  284 (309)
                      ..+++.++++
T Consensus        80 s~~gc~~~vk   89 (91)
T PF12973_consen   80 SDEGCLILVK   89 (91)
T ss_dssp             ESSCEEEEEE
T ss_pred             cCCCEEEEEE
Confidence            8777776654

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.97  E-value=3.3e-09  Score=98.67  Aligned_cols=65  Identities=28%  Similarity=0.367  Sum_probs=59.5

Q ss_pred             EEEEEcCCCcCCc-cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPA-HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~-H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+++++||+.++. |+|.++|..|||+|+..+  .++++++.+.+||++||||+++|++.|.+++++.
T Consensus       182 ~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~--~~~g~~~~V~~GD~i~i~~~~~h~~~~~G~~~~~  247 (260)
T TIGR03214       182 HILSFEPGASHPYIETHVMEHGLYVLEGKGVY--NLDNNWVPVEAGDYIWMGAYCPQACYAGGRGEFR  247 (260)
T ss_pred             EEEEECCCcccCCcccccceeEEEEEeceEEE--EECCEEEEecCCCEEEECCCCCEEEEecCCCcEE
Confidence            6799999999996 777888899999999999  7899999999999999999999999999987654

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>smart00835 Cupin_1 Cupin

Probab=98.95  E-value=7.8e-09  Score=87.68  Aligned_cols=67  Identities=24%  Similarity=0.280  Sum_probs=57.2

Q ss_pred             EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCe------EEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGE------RFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~------~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ..++++||+..+.|+|+ ..|++||++|++++  .++++      .+.+++||++++|+++.|++.|.++..+.++
T Consensus        33 ~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~--~~~~~~~~~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l  106 (146)
T smart00835       33 ARVNLEPGGMLPPHYHPRATELLYVVRGEGRV--GVVDPNGNKVYDARLREGDVFVVPQGHPHFQVNSGDENLEFV  106 (146)
T ss_pred             EEEEecCCcCcCCeeCCCCCEEEEEEeCeEEE--EEEeCCCCeEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEE
Confidence            46789999999999997 67899999999999  44444      8999999999999999999999886655443

This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.

>PRK11171 hypothetical protein; Provisional

Probab=98.95  E-value=4e-09  Score=98.38  Aligned_cols=65  Identities=26%  Similarity=0.358  Sum_probs=59.3

Q ss_pred             EEEEEcCCCcCCc-cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPA-HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~-H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..++++||+.++. |+|.++|.+||++|++++  .++++++.|++||+++++++.+|++.|.+++.+.
T Consensus       187 ~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~--~~~~~~~~l~~GD~i~~~~~~~h~~~N~g~~~~~  252 (266)
T PRK11171        187 NIVTFEPGASIPFVETHVMEHGLYVLEGKGVY--RLNNDWVEVEAGDFIWMRAYCPQACYAGGPGPFR  252 (266)
T ss_pred             EEEEECCCCEEccCcCCCceEEEEEEeCEEEE--EECCEEEEeCCCCEEEECCCCCEEEECCCCCcEE
Confidence            5689999999988 478889999999999999  7899999999999999999999999999876654

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=98.93  E-value=7.9e-09  Score=100.57  Aligned_cols=83  Identities=23%  Similarity=0.436  Sum_probs=66.4

Q ss_pred             eecCCceEEEeeeC--CC-----eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEe---CCeEEEecCCcEEEECC
Q 021698          199 EMIPGGSMKIIRES--PT-----SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLT---KGERFDLTVGDYLFTPA  267 (309)
Q Consensus       199 ~~~pgg~~~il~~~--~~-----~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~---~~~~~~L~pGd~i~iP~  267 (309)
                      ...+||+.+++...  +.     ...++++||+..++|||+. .|+.||++|++++++..   +++++.+++||.+|+|+
T Consensus       224 ~~~~gG~~~~~~~~~~p~~~~~s~~~~~l~PG~~~~~H~H~~~~E~~yvl~G~~~~~v~d~~g~~~~~~l~~GD~~~iP~  303 (367)
T TIGR03404       224 KQVPGGTVRIADSTNFPVSKTIAAAIVTVEPGAMRELHWHPNADEWQYFIQGQARMTVFAAGGNARTFDYQAGDVGYVPR  303 (367)
T ss_pred             eecCCceEEEEChhhccCcceEEEEEEEECCCCccCCeeCcCCCeEEEEEEEEEEEEEEecCCcEEEEEECCCCEEEECC
Confidence            45678888876432  21     2678999999999999995 68899999999995221   25688999999999999


Q ss_pred             CCcEEEEEcCCeEE
Q 021698          268 GDVHRVKYYEETEF  281 (309)
Q Consensus       268 g~~H~~~n~~d~~~  281 (309)
                      |..|+++|.+++.+
T Consensus       304 g~~H~i~N~G~e~l  317 (367)
T TIGR03404       304 NMGHYVENTGDETL  317 (367)
T ss_pred             CCeEEEEECCCCCE
Confidence            99999999986553

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=98.89  E-value=8.4e-09  Score=87.86  Aligned_cols=70  Identities=21%  Similarity=0.251  Sum_probs=61.5

Q ss_pred             EEEEEcCCCcC-CccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCC--CcEEEEEcCCeEEEEEEcC
Q 021698          216 AIVRFKAGSVE-PAHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       216 ~~v~l~pG~~~-p~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g--~~H~~~n~~d~~~~i~~~g  287 (309)
                      .+.+++||..+ ..|||.. +|++|||+|++++  ..++..+.|.|||++-+|+|  +-|.+.|.++..+.+...|
T Consensus        45 n~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l--~~d~~e~~lrpGD~~gFpAG~~~aHhliN~s~~~~~yL~vG  118 (161)
T COG3837          45 NLEIVEPGGESSLRHWHSAEDEFVYILEGEGTL--REDGGETRLRPGDSAGFPAGVGNAHHLINRSDVILRYLEVG  118 (161)
T ss_pred             ceEEeCCCCccccccccccCceEEEEEcCceEE--EECCeeEEecCCceeeccCCCcceeEEeecCCceEEEEEec
Confidence            46789999876 6799975 5778999999999  67999999999999999999  8899999999888777665

>PRK11171 hypothetical protein; Provisional

Probab=98.87  E-value=2.5e-08  Score=93.10  Aligned_cols=69  Identities=19%  Similarity=0.325  Sum_probs=58.4

Q ss_pred             EEEEEcCCCcCCcccc--CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKAGSVEPAHHH--TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H--~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      .+++++||+....|.|  ..+|++||++|++++  .++++++.|.+||++++|++++|+++|.++..+.++|.
T Consensus        64 ~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v--~~~g~~~~L~~GDsi~~p~~~~H~~~N~g~~~a~~l~v  134 (266)
T PRK11171         64 YLVEVEPGGGSDQPEPDEGAETFLFVVEGEITL--TLEGKTHALSEGGYAYLPPGSDWTLRNAGAEDARFHWI  134 (266)
T ss_pred             EEEEECCCCcCCCCCCCCCceEEEEEEeCEEEE--EECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            5678999987665554  357889999999999  68999999999999999999999999998776655554

>TIGR03214 ura-cupin putative allantoin catabolism protein

Probab=98.86  E-value=1.5e-08  Score=94.23  Aligned_cols=69  Identities=20%  Similarity=0.263  Sum_probs=58.0

Q ss_pred             EEEEEcCCCcCC-ccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKAGSVEP-AHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p-~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      .+++++||+..+ .|+|+. +|++||++|++++  .++++++.|.+||++|+|++.+|+++|.++..+.++|.
T Consensus        61 ~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v--~~~g~~~~L~~Gd~~y~pa~~~H~~~N~~~~~a~~l~v  131 (260)
T TIGR03214        61 YIVEVHPGGGNTTGFGGEGIETFLFVISGEVNV--TAEGETHELREGGYAYLPPGSKWTLANAQAEDARFFLY  131 (260)
T ss_pred             EEEEECCCCcCCCCCCCCceEEEEEEEeCEEEE--EECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            578899987654 455665 6889999999999  68999999999999999999999999998766655543

This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).

>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family

Probab=98.81  E-value=6e-08  Score=94.44  Aligned_cols=68  Identities=25%  Similarity=0.463  Sum_probs=57.0

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CCeEE--EecCCcEEEECCCCcEEEEEcCC-eEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KGERF--DLTVGDYLFTPAGDVHRVKYYEE-TEFFI  283 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~~--~L~pGd~i~iP~g~~H~~~n~~d-~~~~i  283 (309)
                      ..+++.||+..++|||...|++||++|++++++.. +++.+  .|++||+++||+|.+|.++|.++ ..+++
T Consensus        70 ~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~~~~~L~~GD~~~fP~g~~H~~~n~~~~~~~l~  141 (367)
T TIGR03404        70 VNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRNYIDDVGAGDLWYFPPGIPHSLQGLDEGCEFLL  141 (367)
T ss_pred             eEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcEEEeEECCCCEEEECCCCeEEEEECCCCeEEEE
Confidence            67899999999999999999999999999996321 35666  49999999999999999999864 34443

Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.

>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase

Probab=98.79  E-value=3.8e-08  Score=84.80  Aligned_cols=68  Identities=12%  Similarity=0.089  Sum_probs=55.0

Q ss_pred             EEEE-cCCCcCCccccCccEEEEEEeCEEEEEEEeCCe--EEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          217 IVRF-KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGE--RFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       217 ~v~l-~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~--~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ++.+ -||....+|.|+.+|++|+++|++.+.+..+++  ...|++||++++|+|++|+....+++..+++
T Consensus        31 v~~vgGpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~t~~LvI  101 (159)
T TIGR03037        31 VTVVGGPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAGSIGLVI  101 (159)
T ss_pred             EEEeCCCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCCcEEEEE
Confidence            3344 566678899999999999999999996333343  8999999999999999999988777766543

Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.

>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional

Probab=98.77  E-value=5.3e-08  Score=85.15  Aligned_cols=64  Identities=13%  Similarity=0.068  Sum_probs=54.2

Q ss_pred             cCCCcCCccccCccEEEEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          221 KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      -||....+|.|+.+|++|+++|++.+.+..++  +...|++||++++|+|++|+.+...++..+++
T Consensus        42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~tv~Lvi  107 (177)
T PRK13264         42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAGSIGLVI  107 (177)
T ss_pred             cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCCeEEEEE
Confidence            57778899999999999999999999533255  58999999999999999999988777766554

>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel)

Probab=98.72  E-value=1.9e-07  Score=79.02  Aligned_cols=62  Identities=26%  Similarity=0.343  Sum_probs=50.4

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--------eEEE--ecCCcEEEECCCCcEEEEEcC
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--------ERFD--LTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--------~~~~--L~pGd~i~iP~g~~H~~~n~~  277 (309)
                      ....+.||+...+|||...+++||++|++++++...+        ....  +++||.+++|+|.+|++.|.+
T Consensus        37 ~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~  108 (144)
T PF00190_consen   37 RRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQEEFRDFSQKVRLKAGDVFVVPAGHPHWIINDG  108 (144)
T ss_dssp             EEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSSEEEEEEEEEEEETTEEEEE-TT-EEEEEECS
T ss_pred             EeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccccceeeeceeeeecccceeeccceeEEEEcCC
Confidence            3466799999999999888999999999998644443        2344  999999999999999999997

This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....

>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC

Probab=98.72  E-value=4.6e-08  Score=79.14  Aligned_cols=58  Identities=24%  Similarity=0.418  Sum_probs=44.1

Q ss_pred             CCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          222 AGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       222 pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      ++...++|+|+.-++.||++|+.++  .++++.+.++|||.+++|||.+|++...++...
T Consensus        12 ~~~~~~~h~h~~~~i~~v~~G~~~~--~~~~~~~~l~~g~~~li~p~~~H~~~~~~~~~~   69 (136)
T PF02311_consen   12 PNFEFPPHWHDFYEIIYVLSGEGTL--HIDGQEYPLKPGDLFLIPPGQPHSYYPDSNEPW   69 (136)
T ss_dssp             TT-SEEEETT-SEEEEEEEEE-EEE--EETTEEEEE-TT-EEEE-TTS-EEEEE-TTSEE
T ss_pred             CCCccCCEECCCEEEEEEeCCEEEE--EECCEEEEEECCEEEEecCCccEEEecCCCCCE
Confidence            3445678999999999999999999  789999999999999999999999988885333

The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.

>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=98.71  E-value=4.2e-08  Score=79.97  Aligned_cols=67  Identities=22%  Similarity=0.398  Sum_probs=55.0

Q ss_pred             EEEEEcCCCcCCccccCccE-EEEEEeCEEEEEEEe-CCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGH-DLVVLEGKKSVWNLT-KGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e-~vyVl~G~l~v~~~~-~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+++++||.....|.|...| .+||++|+..+|+.. =+....+.|||++|||||++|.-.|.++..+.
T Consensus        49 ~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S~ep~s  117 (142)
T COG4101          49 HLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNRLEEHAEVGPGDFFYIPPGVPHQPANLSTEPLS  117 (142)
T ss_pred             EEEeeCCCccccccccccccEEEEEEeceeeeeeccceeeeEEecCCCeEEcCCCCCCcccccCCCCeE
Confidence            57899999999999998765 579999999997311 12457899999999999999999999865543

>PRK04190 glucose-6-phosphate isomerase; Provisional

Probab=98.63  E-value=2.3e-07  Score=82.57  Aligned_cols=65  Identities=20%  Similarity=0.289  Sum_probs=52.8

Q ss_pred             EEEEEcCCCc------CCccccCc---cEEEEEEeCEEEEEEEeCCe-----EEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          216 AIVRFKAGSV------EPAHHHTF---GHDLVVLEGKKSVWNLTKGE-----RFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~------~p~H~H~~---~e~vyVl~G~l~v~~~~~~~-----~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      .+.+++||..      .+.|.|+.   .|+.||++|+..+  .+++.     .+.++|||.++||||..|++.|.++.++
T Consensus        71 g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~--~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl  148 (191)
T PRK04190         71 GTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLM--LLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTGDEPL  148 (191)
T ss_pred             EEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEE--EEecCCCcEEEEEECCCCEEEECCCCcEEeEECCCCCE
Confidence            4678899885      45699964   4888999999998  44433     6899999999999999999999997654


Q ss_pred             E
Q 021698          282 F  282 (309)
Q Consensus       282 ~  282 (309)
                      .
T Consensus       149 ~  149 (191)
T PRK04190        149 V  149 (191)
T ss_pred             E
Confidence            3

>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER)

Probab=98.55  E-value=3.1e-07  Score=77.71  Aligned_cols=81  Identities=23%  Similarity=0.390  Sum_probs=48.6

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-------CeEEEecCCcEEEECCCCcEEEEEcCC-eE---EEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-------GERFDLTVGDYLFTPAGDVHRVKYYEE-TE---FFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-------~~~~~L~pGd~i~iP~g~~H~~~n~~d-~~---~~i~  284 (309)
                      .+.++.||...|.|+|.-+|.++||+|+.++.+...       -+.+.+.|++.+.||++.+|+++|.++ ++   ++++
T Consensus        47 wlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~eDlqvlVii  126 (167)
T PF02041_consen   47 WLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEHEDLQVLVII  126 (167)
T ss_dssp             EEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SSS-EEEEEEE
T ss_pred             EeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCCcceEEEEEe
Confidence            457899999999999999999999999999842111       145788899999999999999999983 33   3456


Q ss_pred             EcCCcccccchh
Q 021698          285 WDGRWDMFFDED  296 (309)
Q Consensus       285 ~~g~~~i~~~~~  296 (309)
                      ...+..+|+.+|
T Consensus       127 SrpPvkvf~y~d  138 (167)
T PF02041_consen  127 SRPPVKVFIYDD  138 (167)
T ss_dssp             ESSS--EEEESS
T ss_pred             cCCCeEEEEecc
Confidence            666777777665

The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.

>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]

Probab=98.46  E-value=1.1e-06  Score=78.61  Aligned_cols=67  Identities=19%  Similarity=0.242  Sum_probs=57.1

Q ss_pred             EEEEEcCCCcCCccccCcc-E--EEEEEeCEEEEEEEeCC---eEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFG-H--DLVVLEGKKSVWNLTKG---ERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~-e--~vyVl~G~l~v~~~~~~---~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .++.+++|+....|||+.. +  +.|||+|+.++.+...+   .+..+++||.+|||++--|+..|+++.+++
T Consensus        83 ~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLv  155 (209)
T COG2140          83 AEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEGEARVIAVRAGDVIYVPPGYGHYTINTGDEPLV  155 (209)
T ss_pred             eEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCCcEEEEEecCCcEEEeCCCcceEeecCCCCCEE
Confidence            6789999999999999853 3  77899999998544444   668899999999999999999999988764

>PRK15457 ethanolamine utilization protein EutQ; Provisional

Probab=98.46  E-value=4.8e-06  Score=75.63  Aligned_cols=71  Identities=23%  Similarity=0.486  Sum_probs=54.7

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE-EEEEcCCcc
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF-FIKWDGRWD  290 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~-~i~~~g~~~  290 (309)
                      .++++.. +..+| ++.+.|+.||++|++++  .++++++.++|||++|||+|..|.+...+...+ ++++++.|.
T Consensus       160 Gf~~~~~-~sf~w-tl~~dEi~YVLEGe~~l--~IdG~t~~l~pGDvlfIPkGs~~hf~tp~~aRflyV~~Pa~w~  231 (233)
T PRK15457        160 GFMQWEN-AFFPW-TLNYDEIDMVLEGELHV--RHEGETMIAKAGDVMFIPKGSSIEFGTPSSVRFLYVAWPANWQ  231 (233)
T ss_pred             EEEEEec-Cccce-eccceEEEEEEEeEEEE--EECCEEEEeCCCcEEEECCCCeEEecCCCCeeEEEEEecCccc
Confidence            4566664 33333 34678999999999999  789999999999999999999987766655544 567777664

>PRK10371 DNA-binding transcriptional regulator MelR; Provisional

Probab=98.37  E-value=9e-07  Score=83.79  Aligned_cols=62  Identities=16%  Similarity=0.108  Sum_probs=53.6

Q ss_pred             EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      ...-++....++|||...|+.|+++|++.+  .++++.+.++|||.++++++++|.+...++..
T Consensus        30 ~~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~--~i~g~~~~l~~Gd~ili~s~~~H~~~~~~~~~   91 (302)
T PRK10371         30 IEFRPPHIMPTSHWHGQVEVNVPFDGDVEY--LINNEKVQINQGHITLFWACTPHQLTDPGNCR   91 (302)
T ss_pred             EEeeCCCCCCCCCccccEEEEEecCCcEEE--EECCEEEEEcCCcEEEEecCCcccccccCCCc
Confidence            344556666889999999999999999999  78999999999999999999999987666544

>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family

Probab=98.36  E-value=1.5e-06  Score=78.79  Aligned_cols=83  Identities=19%  Similarity=0.095  Sum_probs=64.9

Q ss_pred             CCceEEEeee-C--CCeEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698          202 PGGSMKIIRE-S--PTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       202 pgg~~~il~~-~--~~~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      +|.....+.. .  ....++++.||+..|.|.|...|+++||+|++.-      +...+.+||+++.|++..|+..+.++
T Consensus       113 ~gv~~~~L~~~~~~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f~d------e~g~y~~Gd~i~~p~~~~H~p~a~~~  186 (215)
T TIGR02451       113 GRVSRVTLPIDDGNARVRLLYIEAGQSIPQHTHKGFELTLVLHGAFSD------ETGVYGVGDFEEADGSVQHQPRTVSG  186 (215)
T ss_pred             CCeEEEeccCCCCCcEEEEEEECCCCccCCCcCCCcEEEEEEEEEEEc------CCCccCCCeEEECCCCCCcCcccCCC
Confidence            4444444443 2  2357899999999999999999998999999542      33457899999999999999999964


Q ss_pred             --eEEEEEEcCCcc
Q 021698          279 --TEFFIKWDGRWD  290 (309)
Q Consensus       279 --~~~~i~~~g~~~  290 (309)
                        +.++.+.+++..
T Consensus       187 ~~Cicl~v~dapl~  200 (215)
T TIGR02451       187 GDCLCLAVLDAPLR  200 (215)
T ss_pred             CCeEEEEEecCCcc
Confidence              788888888644

The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.

>PRK13501 transcriptional activator RhaR; Provisional

Probab=98.19  E-value=4.5e-06  Score=77.99  Aligned_cols=57  Identities=19%  Similarity=0.313  Sum_probs=50.0

Q ss_pred             CCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          222 AGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       222 pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      +....++|||+..|++|+++|++++  .++++.+.+++||.++||||.+|.+...++..
T Consensus        27 ~~~~~~~H~H~~~ei~~i~~G~~~~--~i~~~~~~l~~g~~~~I~p~~~H~~~~~~~~~   83 (290)
T PRK13501         27 PQETFVEHTHQFCEIVIVWRGNGLH--VLNDHPYRITCGDVFYIQAADHHSYESVHDLV   83 (290)
T ss_pred             CCCCCccccccceeEEEEecCceEE--EECCeeeeecCCeEEEEcCCCcccccccCCeE
Confidence            3345678999999999999999999  78999999999999999999999987655543

>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional

Probab=98.15  E-value=9e-06  Score=75.37  Aligned_cols=52  Identities=33%  Similarity=0.490  Sum_probs=46.8

Q ss_pred             CCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc
Q 021698          223 GSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       223 G~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~  276 (309)
                      +...++|||...|++||++|++++  .++++.+.+++||.++||||+.|.....
T Consensus        33 ~~~~~~H~H~~~ei~~v~~G~~~~--~i~~~~~~l~~g~l~~i~p~~~H~~~~~   84 (278)
T PRK10296         33 ESVSGLHQHDYYEFTLVLTGRYYQ--EINGKRVLLERGDFVFIPLGSHHQSFYE   84 (278)
T ss_pred             hcCCCCcccccEEEEEEEeceEEE--EECCEEEEECCCcEEEeCCCCccceeee
Confidence            345589999999999999999999  6899999999999999999999987544

>PRK13500 transcriptional activator RhaR; Provisional

Probab=98.10  E-value=9e-06  Score=77.17  Aligned_cols=54  Identities=22%  Similarity=0.362  Sum_probs=49.1

Q ss_pred             CcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          224 SVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       224 ~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      ...++|+|+..|++||++|++.+  .++++.+.+.+||.++|||+.+|.+....+.
T Consensus        59 ~~~~~H~H~~~el~~v~~G~g~~--~v~~~~~~l~~Gdl~~I~~~~~H~~~~~~~~  112 (312)
T PRK13500         59 DVFAEHTHDFCELVIVWRGNGLH--VLNDRPYRITRGDLFYIHADDKHSYASVNDL  112 (312)
T ss_pred             CCCCccccceEEEEEEEcCeEEE--EECCEEEeecCCeEEEECCCCeecccccCCc
Confidence            44689999999999999999999  7899999999999999999999998776653

>PRK13502 transcriptional activator RhaR; Provisional

Probab=98.06  E-value=1.2e-05  Score=74.72  Aligned_cols=57  Identities=21%  Similarity=0.311  Sum_probs=50.0

Q ss_pred             cCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          221 KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      .|....++|+|+..+++||++|++.+  .++++.+.++|||.++|||+.+|.+...++.
T Consensus        26 ~~~~~~~~H~h~~~~l~~v~~G~~~~--~i~~~~~~l~~g~l~li~~~~~H~~~~~~~~   82 (282)
T PRK13502         26 YPQDVFAEHTHEFCELVMVWRGNGLH--VLNERPYRITRGDLFYIRAEDKHSYTSVNDL   82 (282)
T ss_pred             CCCCCCCccccceEEEEEEecCcEEE--EECCEEEeecCCcEEEECCCCcccccccCCc
Confidence            34455688999999999999999999  7899999999999999999999998765543

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=98.06  E-value=2.4e-05  Score=70.26  Aligned_cols=69  Identities=19%  Similarity=0.310  Sum_probs=54.6

Q ss_pred             EEEEEcCCCcCC-ccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKAGSVEP-AHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p-~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      .++++.|++... ...-+. +-++||++|++++  ..+++++.|.+|+++|+|||.-|.++|.+.+..++.|.
T Consensus        64 yive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv--~~~G~th~l~eggyaylPpgs~~~~~N~~~~~~rfhw~  134 (264)
T COG3257          64 YIVELHPNGGSQRPEGDEGAETFLFVVSGEITV--KAEGKTHALREGGYAYLPPGSGWTLRNAQKEDSRFHWI  134 (264)
T ss_pred             heEEECCCCCCCCCCCCCcceEEEEEEeeeEEE--EEcCeEEEeccCCeEEeCCCCcceEeeccCCceEEEEE
Confidence            467887776543 333344 4567999999999  78999999999999999999999999998666555553

>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B

Probab=98.03  E-value=5.4e-05  Score=58.91  Aligned_cols=67  Identities=19%  Similarity=0.281  Sum_probs=51.1

Q ss_pred             EEEEEcCCCcC-CccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVE-PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~-p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ..+.++||+.- +.+.+...-.+||++|.+++  .+.+..+.+.+|++++||+|-.-.++|.++.+..+.
T Consensus        15 G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~V--ti~~~~f~v~~G~~F~VP~gN~Y~i~N~~~~~a~Lf   82 (85)
T PF11699_consen   15 GMLELPPGGEKPPKNSRDNTMVFYVIKGKVEV--TIHETSFVVTKGGSFQVPRGNYYSIKNIGNEEAKLF   82 (85)
T ss_dssp             EEEEE-TCCCEEEEE--SEEEEEEEEESEEEE--EETTEEEEEETT-EEEE-TT-EEEEEE-SSS-EEEE
T ss_pred             EEEEeCCCCccCCcccCCcEEEEEEEeCEEEE--EEcCcEEEEeCCCEEEECCCCEEEEEECCCCcEEEE
Confidence            57889998765 56777777778999999999  789999999999999999999999999998877644

>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA

Probab=98.02  E-value=1.4e-05  Score=74.26  Aligned_cols=55  Identities=16%  Similarity=0.225  Sum_probs=49.1

Q ss_pred             CCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          223 GSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       223 G~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      +...++|||. ..+++|+++|++.+  .++++.+.+++||.+++||+++|.+....+.
T Consensus        33 ~~~~~~H~H~~~~~l~~~~~G~~~~--~~~~~~~~l~~g~~~ii~~~~~H~~~~~~~~   88 (287)
T TIGR02297        33 GRNMPVHFHDRYYQLHYLTEGSIAL--QLDEHEYSEYAPCFFLTPPSVPHGFVTDLDA   88 (287)
T ss_pred             CCCCCCcccccceeEEEEeeCceEE--EECCEEEEecCCeEEEeCCCCccccccCCCc
Confidence            4567899998 79999999999999  7899999999999999999999998766543

This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.

>PLN00212 glutelin; Provisional

Probab=97.95  E-value=4.8e-05  Score=76.64  Aligned_cols=67  Identities=13%  Similarity=0.099  Sum_probs=57.0

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC----------------------------eEEEecCCcEEEECC
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG----------------------------ERFDLTVGDYLFTPA  267 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~----------------------------~~~~L~pGd~i~iP~  267 (309)
                      ..+++.|++...+|.|...+++||++|+..+.+...+                            +.+.+++||.+.||+
T Consensus        83 ~R~~i~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPa  162 (493)
T PLN00212         83 IRRVIEPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPA  162 (493)
T ss_pred             EEEEecCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcccccccccccccccccccccceEeccCCEEEECC
Confidence            5678899999999999999999999999998643321                            226999999999999


Q ss_pred             CCcEEEEEcCCeEEE
Q 021698          268 GDVHRVKYYEETEFF  282 (309)
Q Consensus       268 g~~H~~~n~~d~~~~  282 (309)
                      |++|++.|.++++++
T Consensus       163 G~~hw~yN~Gd~~~v  177 (493)
T PLN00212        163 GVAHWFYNDGDAPVV  177 (493)
T ss_pred             CCeEEEEeCCCCcEE
Confidence            999999999987653

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=97.92  E-value=4.9e-05  Score=70.36  Aligned_cols=74  Identities=28%  Similarity=0.422  Sum_probs=46.4

Q ss_pred             eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeE---EEecCCcEEEECCCCcEEEEEcCCeEEEE--EEcCCc
Q 021698          215 SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER---FDLTVGDYLFTPAGDVHRVKYYEETEFFI--KWDGRW  289 (309)
Q Consensus       215 ~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~---~~L~pGd~i~iP~g~~H~~~n~~d~~~~i--~~~g~~  289 (309)
                      ..++++++|...|+|+|...+.+|||+|.+..    ++..   .-|++|.+++.|+|..|...+.+++.+.+  +-.+++
T Consensus        38 ~~~vkf~~g~~~pph~H~~~~~~~Vi~G~~~~----~~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~~~~~~~e~g~gp~  113 (251)
T PF14499_consen   38 GMRVKFPAGFSSPPHIHNADYRGTVISGELHN----GDPKAAAMWLPAGSYWFQPAGEPHITAAEGETNLLFIEIGEGPY  113 (251)
T ss_dssp             EEEEEE-TT-EE--BEESS-EEEEEEESEEEE----TTEE-----E-TTEEEEE-TT-EEEETTS-EE-EEEEE-S---E
T ss_pred             eEEEEcCCCccCCCcceeeeEEEEEEEeEEEc----CCCcccceecCCCceEeccCCCceeeeccCccEEEEEEeCCCcc
Confidence            47899999999999999999999999998776    5544   34999999999999999887777664433  444555


Q ss_pred             ccc
Q 021698          290 DMF  292 (309)
Q Consensus       290 ~i~  292 (309)
                      ++.
T Consensus       114 ~v~  116 (251)
T PF14499_consen  114 DVK  116 (251)
T ss_dssp             E--
T ss_pred             ccc
Confidence            543

>PRK13503 transcriptional activator RhaS; Provisional

Probab=97.91  E-value=1.4e-05  Score=73.79  Aligned_cols=55  Identities=24%  Similarity=0.375  Sum_probs=48.9

Q ss_pred             CCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698          222 AGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       222 pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      +....++|+|+..|++||++|.+++  .++++.+.+++||.+++||+.+|.+....+
T Consensus        24 ~~~~~~~H~H~~~ei~~v~~G~~~~--~i~~~~~~l~~g~~~~i~~~~~h~~~~~~~   78 (278)
T PRK13503         24 PQAAFPEHHHDFHEIVIVEHGTGIH--VFNGQPYTLSGGTVCFVRDHDRHLYEHTDN   78 (278)
T ss_pred             ccccccccccCceeEEEEecCceee--EecCCcccccCCcEEEECCCccchhhhccC
Confidence            3455689999999999999999999  789999999999999999999998866543

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.83  E-value=5.6e-05  Score=72.78  Aligned_cols=66  Identities=26%  Similarity=0.396  Sum_probs=58.7

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+..++||...+.|+|...-+.||++|+...+ .++++++.+++||++.+|++..|.-.|.++..++
T Consensus        84 ~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t-~V~g~~~~~~~gD~~~tP~w~wH~H~n~~d~~~~  149 (335)
T TIGR02272        84 GLQLILPGEVAPSHRHTQSALRFIVEGKGAFT-AVDGERTTMHPGDFIITPSWTWHDHGNPGDEPMI  149 (335)
T ss_pred             hhEEeCCCCCCCccccccceEEEEEEcCceEE-EECCEEEeeeCCCEEEeCCCeeEecccCCCCcEE
Confidence            35678999999999999999999999998643 5799999999999999999999999999887644

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1

Probab=97.68  E-value=0.00096  Score=56.85  Aligned_cols=69  Identities=14%  Similarity=0.132  Sum_probs=46.1

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ..+.--|+.....|.-+.+|++|-++|.+.+.+..++  +...+++||.+++|++++|+.+-..++.-+|+
T Consensus        36 VmvVGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~tiGLVi  106 (151)
T PF06052_consen   36 VMVVGGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPADTIGLVI  106 (151)
T ss_dssp             EEEEESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT-EEEEE
T ss_pred             EEEEcCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCCcEEEEE
Confidence            3455567788899999999999999999998644444  44789999999999999999888777765543

13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.

>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A

Probab=97.65  E-value=9.4e-05  Score=68.46  Aligned_cols=103  Identities=19%  Similarity=0.341  Sum_probs=60.2

Q ss_pred             eeecCCCCceeec----CCceEEEeeeCCCe-----EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecC
Q 021698          189 LVKNRELNPVEMI----PGGSMKIIRESPTS-----AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTV  259 (309)
Q Consensus       189 l~~~~~~~~~~~~----pgg~~~il~~~~~~-----~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~p  259 (309)
                      .....+.+++...    ++...+.|..++..     .++.+++|.....|+|...+..|||+|++.++..-.++...|.+
T Consensus       138 wld~~dl~W~~~~~~~~~g~~~a~Lwgd~~~g~~~gll~kLPagf~g~i~~h~~~eraVvI~G~~~~~~~~~~~~~~L~~  217 (251)
T PF14499_consen  138 WLDASDLEWISAPPGPPPGAQIAFLWGDPNTGQYTGLLLKLPAGFTGRIHTHASNERAVVISGELDYQSYGASNFGTLDP  217 (251)
T ss_dssp             EEECCCS--EE-SSSTT-SEEEEEEEE-TTS-EE-EEEEE-SSEE--SEEE--S-EEEEEEEEEEEETTEEEETTEEEEE
T ss_pred             EeccccCCccccCCCCCCcceEEEEecCCCCCceeeEEEEcCCCCcCceeccCCceEEEEEEeEEEEeecccCCCccccC
Confidence            4455556665544    67788888887652     56778888888999999999999999999983112345588999


Q ss_pred             CcEEEECCCCcEEEE-EcCCeEEEEEEcCCccc
Q 021698          260 GDYLFTPAGDVHRVK-YYEETEFFIKWDGRWDM  291 (309)
Q Consensus       260 Gd~i~iP~g~~H~~~-n~~d~~~~i~~~g~~~i  291 (309)
                      |.+++-|+...|+.. ...++.++|..+|.+++
T Consensus       218 GSYf~s~~~~~H~~~~~e~~~vlyIRtdG~l~~  250 (251)
T PF14499_consen  218 GSYFGSPGHITHGIFITEDECVLYIRTDGKLSV  250 (251)
T ss_dssp             -TT-EE--E------EESS-EEEEEEESS-TTS
T ss_pred             CcccccCCcccccccccCCCEEEEEEECCeeec
Confidence            999999999999995 44578888999887653

>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase

Probab=97.64  E-value=0.00022  Score=68.75  Aligned_cols=66  Identities=18%  Similarity=0.196  Sum_probs=57.5

Q ss_pred             EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ...+++|.....|+|.....++|++|+.+.  .++++++..++||.+.+|+...|+..|.++..++.+
T Consensus       254 ~q~L~~G~~t~~~r~T~s~Vf~VieG~G~s--~ig~~~~~W~~gD~f~vPsW~~~~h~a~~da~Lf~~  319 (335)
T TIGR02272       254 IQLLPKGFRTATYRSTDATVFCVVEGRGQV--RIGDAVFRFSPKDVFVVPSWHPVRFEASDDAVLFSF  319 (335)
T ss_pred             HhccCCCCCCCCccccccEEEEEEeCeEEE--EECCEEEEecCCCEEEECCCCcEecccCCCeEEEEe
Confidence            356788888999999999999999999999  789999999999999999999998888766555433

This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.

>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []

Probab=97.62  E-value=0.00028  Score=61.03  Aligned_cols=54  Identities=20%  Similarity=0.198  Sum_probs=38.9

Q ss_pred             cCCccccCccEEEEEEeCEEEEEEEeCCeE---EEecCCcEEEECCCCcEEEEEcCC
Q 021698          225 VEPAHHHTFGHDLVVLEGKKSVWNLTKGER---FDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       225 ~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~---~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      ....|.|..+|.-|+++|+..+-+...++.   ..+.+||.+.+|+|+.|+|.-...
T Consensus        84 f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~~~  140 (157)
T PF03079_consen   84 FFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLGES  140 (157)
T ss_dssp             HCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEESTT
T ss_pred             hheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcCCC
Confidence            345799999999999999999854444444   368999999999999999976553

ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.

>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine

Probab=97.60  E-value=0.0003  Score=60.41  Aligned_cols=70  Identities=19%  Similarity=0.412  Sum_probs=50.7

Q ss_pred             EEEEEcCCCcCCcccc-CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE-EEEEcCCcc
Q 021698          216 AIVRFKAGSVEPAHHH-TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF-FIKWDGRWD  290 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H-~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~-~i~~~g~~~  290 (309)
                      ..+++...   +.-|. ...|.-|||+|++++  .++++++..+|||.+|||+|..=.+...+...+ ++.++..|.
T Consensus        80 Gf~~le~~---~f~wtl~YDEi~~VlEG~L~i--~~~G~~~~A~~GDvi~iPkGs~I~fst~~~a~~~Yv~yPa~W~  151 (152)
T PF06249_consen   80 GFMELEKT---SFPWTLTYDEIKYVLEGTLEI--SIDGQTVTAKPGDVIFIPKGSTITFSTPDYARFFYVTYPANWQ  151 (152)
T ss_dssp             EEEEEEEE---EEEEE-SSEEEEEEEEEEEEE--EETTEEEEEETT-EEEE-TT-EEEEEEEEEEEEEEEEESTT--
T ss_pred             EEEEEeCC---CccEEeecceEEEEEEeEEEE--EECCEEEEEcCCcEEEECCCCEEEEecCCCEEEEEEECCCccC
Confidence            67788753   34444 567888999999999  789999999999999999999988877665554 455555563

The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.

>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []

Probab=97.54  E-value=0.00029  Score=59.06  Aligned_cols=67  Identities=24%  Similarity=0.288  Sum_probs=37.9

Q ss_pred             EcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC--CeEEEecCC-cEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          220 FKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK--GERFDLTVG-DYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       220 l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~--~~~~~L~pG-d~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      .++|....+|.|.. .|+++|++|++++.+..+  .+.+.|... ..++||||++|.+.+.++..++++|.
T Consensus        40 ~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~~~L~Ippg~w~~~~~~s~~svlLv~a  110 (131)
T PF05523_consen   40 VPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPNKGLYIPPGVWHGIKNFSEDSVLLVLA  110 (131)
T ss_dssp             --SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TTEEEEE-TT-EEEEE---TT-EEEEEE
T ss_pred             CCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCCeEEEECCchhhHhhccCCCcEEEEEc
Confidence            44555578999975 577899999999953222  245666655 59999999999999998544444443

It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.

>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins

Probab=97.50  E-value=0.0021  Score=53.30  Aligned_cols=87  Identities=16%  Similarity=0.168  Sum_probs=67.7

Q ss_pred             cCCceEEEeee-CCC--e-EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc
Q 021698          201 IPGGSMKIIRE-SPT--S-AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       201 ~pgg~~~il~~-~~~--~-~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~  276 (309)
                      ..|.+.+++-. +..  | ...++.+|+....|.-..-|-+|+++|+.++....+++.+.++||..+.+.....|.+++.
T Consensus        19 ~~w~SrRlll~~DgmGFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G~~~~i~pGt~YaLd~hD~H~lra~   98 (126)
T PF06339_consen   19 ENWESRRLLLKDDGMGFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTGEVHPIKPGTMYALDKHDRHYLRAK   98 (126)
T ss_pred             CCceEEEEEEccCCCCEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCCcEEEcCCCeEEecCCCccEEEEec
Confidence            35566665533 332  3 3567899999998888888999999999999644488999999999999999999999998


Q ss_pred             CCeEEEEEEcC
Q 021698          277 EETEFFIKWDG  287 (309)
Q Consensus       277 ~d~~~~i~~~g  287 (309)
                      ++-.+..++.+
T Consensus        99 ~dm~~vCVFnP  109 (126)
T PF06339_consen   99 TDMRLVCVFNP  109 (126)
T ss_pred             CCEEEEEEcCC
Confidence            86665544443

The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process

>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown

Probab=97.42  E-value=0.0003  Score=53.04  Aligned_cols=58  Identities=24%  Similarity=0.287  Sum_probs=42.3

Q ss_pred             EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC
Q 021698          217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~  277 (309)
                      +....||. .+++... .|++|||+|++++. ..+++++.++|||++++|+|..-.+...+
T Consensus        11 ~w~~~pg~-~~~~~~~-~E~~~vleG~v~it-~~~G~~~~~~aGD~~~~p~G~~~~w~v~~   68 (74)
T PF05899_consen   11 VWECTPGK-FPWPYPE-DEFFYVLEGEVTIT-DEDGETVTFKAGDAFFLPKGWTGTWEVRE   68 (74)
T ss_dssp             EEEEECEE-EEEEESS-EEEEEEEEEEEEEE-ETTTEEEEEETTEEEEE-TTEEEEEEEEE
T ss_pred             EEEECCce-eEeeCCC-CEEEEEEEeEEEEE-ECCCCEEEEcCCcEEEECCCCEEEEEECe
Confidence            34556654 3333333 88999999999995 33888999999999999999876665443

They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.35  E-value=0.00032  Score=65.99  Aligned_cols=65  Identities=28%  Similarity=0.392  Sum_probs=58.3

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      .+.-+.||..-|.|+|.+.-+-||++|+..++ .++++...+.+||++..|.+..|.--|.++.++
T Consensus        95 glQlilPGEvApsHrHsqsAlRFvveG~Ga~T-~VdGer~~M~~GDfilTP~w~wHdHgn~g~eP~  159 (351)
T COG3435          95 GLQLILPGEVAPSHRHNQSALRFVVEGKGAYT-VVDGERTPMEAGDFILTPAWTWHDHGNEGTEPC  159 (351)
T ss_pred             hhheecCcccCCcccccccceEEEEeccceeE-eecCceeeccCCCEEEccCceeccCCCCCCCce
Confidence            34567899999999999999999999999887 679999999999999999999999989886665

>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.26  E-value=0.0012  Score=56.43  Aligned_cols=71  Identities=23%  Similarity=0.437  Sum_probs=54.9

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE-EEEEcCCcc
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF-FIKWDGRWD  290 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~-~i~~~g~~~  290 (309)
                      .++++.+ +..|| .-...|.-|||+|++.+  .+++++...+|||.+|||.|..-.+...+...+ +++|+..|.
T Consensus       103 G~m~~~~-~tf~w-tl~yDe~d~VlEGrL~V--~~~g~tv~a~aGDvifiPKgssIefst~gea~flyvtyPanWq  174 (176)
T COG4766         103 GLMEMKN-TTFPW-TLNYDEIDYVLEGRLHV--RIDGRTVIAGAGDVIFIPKGSSIEFSTTGEAKFLYVTYPANWQ  174 (176)
T ss_pred             ceeeecc-ccCcc-eecccceeEEEeeeEEE--EEcCCeEecCCCcEEEecCCCeEEEeccceEEEEEEEcccccc
Confidence            3556665 44443 34567888999999999  789999999999999999999988877776554 566666664

>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5

Probab=97.10  E-value=0.0025  Score=56.40  Aligned_cols=66  Identities=21%  Similarity=0.322  Sum_probs=39.3

Q ss_pred             EEEEcCCCc------CCccccCc-------cEEEEEEeCEEEEEEEeCCe-------EEEecCCcEEEECCCCcEEEEEc
Q 021698          217 IVRFKAGSV------EPAHHHTF-------GHDLVVLEGKKSVWNLTKGE-------RFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       217 ~v~l~pG~~------~p~H~H~~-------~e~vyVl~G~l~v~~~~~~~-------~~~L~pGd~i~iP~g~~H~~~n~  276 (309)
                      +..+.||..      ..-|.|+.       .|..+|++|+..+..+..+.       ...+.|||.++|||+-.|+..|+
T Consensus        54 iTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~  133 (182)
T PF06560_consen   54 ITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINT  133 (182)
T ss_dssp             EEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-
T ss_pred             eEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceEEEEEC
Confidence            455666532      13488875       47778999988874333332       26789999999999999999999


Q ss_pred             CCeEEE
Q 021698          277 EETEFF  282 (309)
Q Consensus       277 ~d~~~~  282 (309)
                      +++++.
T Consensus       134 g~~~L~  139 (182)
T PF06560_consen  134 GDEPLV  139 (182)
T ss_dssp             SSS-EE
T ss_pred             CCCcEE
Confidence            987764

3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....

>PLN00212 glutelin; Provisional

Probab=97.01  E-value=0.0049  Score=62.36  Aligned_cols=64  Identities=16%  Similarity=0.129  Sum_probs=51.2

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEe-C-CeEE--EecCCcEEEECCCCcEEEEEcCCe
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLT-K-GERF--DLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~-~-~~~~--~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      ..+.+.+|+..++|||+. .+++||++|++.+++.. . ...+  .|.+||.++||.|.+|..++..+.
T Consensus       351 ~rv~L~~gam~~PHwn~nA~eI~yV~rG~g~vqvV~~~g~~vf~~~L~~GdvfVVPqg~~v~~~A~~eg  419 (493)
T PLN00212        351 TRVNLYQNALLSPFWNVNAHSVVYITQGRARVQVVSNNGKTVFNGVLRPGQLLIIPQHYAVLKKAEREG  419 (493)
T ss_pred             EEEEEcCCcccCCeecCCCCEEEEEeecceEEEEEcCCCCEEEEEEEcCCCEEEECCCCeEEEeecCCc
Confidence            567889999999999986 46789999999997432 2 2233  799999999999999987776443

>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.95  E-value=0.0036  Score=54.46  Aligned_cols=52  Identities=19%  Similarity=0.161  Sum_probs=43.1

Q ss_pred             CccccCccEEEEEEeCEEEEEEEeCC-eE--EEecCCcEEEECCCCcEEEEEcCC
Q 021698          227 PAHHHTFGHDLVVLEGKKSVWNLTKG-ER--FDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       227 p~H~H~~~e~vyVl~G~l~v~~~~~~-~~--~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      .-|.|...|.-|+++|.+.+.+...+ ..  ..+.+||.+.+|||+.|++.-..+
T Consensus        89 ~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~~  143 (181)
T COG1791          89 QEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTES  143 (181)
T ss_pred             HHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccCC
Confidence            46999999999999999998644444 33  467899999999999999977664

>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.80  E-value=0.0034  Score=59.21  Aligned_cols=64  Identities=28%  Similarity=0.375  Sum_probs=55.9

Q ss_pred             EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC-CeEEE
Q 021698          217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFF  282 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~  282 (309)
                      ...++||-....|+|...-+.-|.+|+...  .++++++...+||++.+|+...|+..|.+ |..+|
T Consensus       265 mqlL~~Gf~~~~~r~t~s~iy~V~eGsg~~--~Ig~~rf~~~~~D~fvVPsW~~~~~~~gs~da~LF  329 (351)
T COG3435         265 MQLLPPGFHGKAHRHTDSTIYHVVEGSGYT--IIGGERFDWSAGDIFVVPSWAWHEHVNGSEDAVLF  329 (351)
T ss_pred             HHhcCCcccCCceeccCCEEEEEEecceeE--EECCEEeeccCCCEEEccCcceeecccCCcceEEE
Confidence            345788888889999999888899999999  78999999999999999999999999965 44444

>COG3806 ChrR Transcriptional activator [Transcription]

Probab=96.78  E-value=0.014  Score=52.06  Aligned_cols=99  Identities=23%  Similarity=0.202  Sum_probs=74.8

Q ss_pred             eeecCCCCceeecCCceEEEeee--CC--CeEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEE
Q 021698          189 LVKNRELNPVEMIPGGSMKIIRE--SP--TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLF  264 (309)
Q Consensus       189 l~~~~~~~~~~~~pgg~~~il~~--~~--~~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~  264 (309)
                      +...-.+.....++|+++.-+.-  ++  ...++.+.+|..+|.|+|-.-|.+.|++|...-  .  ..  .+.+||+..
T Consensus       100 l~g~~l~~~~W~~~G~rv~~v~l~~dds~~V~llki~~g~s~P~HtH~G~E~t~vl~G~~sd--e--~G--~y~vgD~~~  173 (216)
T COG3806         100 LEGALLGPWRWLGPGGRVEPVRLPTDDSRRVALLKIEPGRSFPDHTHVGIERTAVLEGAFSD--E--NG--EYLVGDFTL  173 (216)
T ss_pred             hhcccccceeeecCCcceeecccCCCCCceeEEEEeccCcccccccccceEEEEEEeecccc--C--CC--ccccCceee
Confidence            33444556677889998875432  22  246788899999999999999999999998665  2  22  577999999


Q ss_pred             ECCCCcEE--EEEcCCeEEEEEEcCCccccc
Q 021698          265 TPAGDVHR--VKYYEETEFFIKWDGRWDMFF  293 (309)
Q Consensus       265 iP~g~~H~--~~n~~d~~~~i~~~g~~~i~~  293 (309)
                      -+.++-|+  +...+++.+++.|++.+.++.
T Consensus       174 ~d~~v~H~piv~~~~eClcl~al~~~~~l~g  204 (216)
T COG3806         174 ADGTVQHSPIVLPPGECLCLAALDGPMMLYG  204 (216)
T ss_pred             cCCccccccccCCCCCceEEEEcCCCeEEEh
Confidence            99999999  444457888889998876553

>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]

Probab=96.52  E-value=0.012  Score=53.25  Aligned_cols=65  Identities=28%  Similarity=0.346  Sum_probs=57.4

Q ss_pred             EEEEEcCCCcCCc-cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPA-HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~-H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .++++.||+.+|. .+|-.++=+|||+|+...  ..++..+.+++||++|+-+-.+......+...+.
T Consensus       185 ~ivsFePGa~ip~aEtHvmEHGlyvLeGk~vY--rLn~dwv~V~aGD~mwm~A~cpQacyagG~g~fr  250 (264)
T COG3257         185 HIVSFEPGASIPYAETHVMEHGLYVLEGKGVY--RLNNNWVPVEAGDYIWMGAYCPQACYAGGRGAFR  250 (264)
T ss_pred             EEEEecCCcccchhhhhhhhcceEEEecceEE--eecCceEEeecccEEEeeccChhhhccCCCCceE
Confidence            6789999999985 788888889999999998  6789999999999999999999988888766554

>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=96.34  E-value=0.02  Score=46.37  Aligned_cols=55  Identities=31%  Similarity=0.289  Sum_probs=44.7

Q ss_pred             CCcCCccccCccEEE-EEEeCEEEEEEEeCCeEEEecCCcEEEECCC--CcEEEEEcCC
Q 021698          223 GSVEPAHHHTFGHDL-VVLEGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEE  278 (309)
Q Consensus       223 G~~~p~H~H~~~e~v-yVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g--~~H~~~n~~d  278 (309)
                      +...++|.|...|.+ ||++|+++-+ ..-+...+|++|+.-|+.+|  +.|.-.|.++
T Consensus        39 ~~gf~~HPH~g~eivTyv~~G~~~H~-Ds~G~~~~l~~G~vq~m~AG~Gi~H~E~~~~~   96 (107)
T PF02678_consen   39 GAGFPMHPHRGFEIVTYVLEGELRHR-DSLGNRGVLRAGDVQWMTAGSGIVHSERNASD   96 (107)
T ss_dssp             TTEEEEEEECSEEEEEEEEESEEEEE-ETTSEEEEEETTEEEEEE-TTTEEEEEEE-TS
T ss_pred             CCCCCCcCCCCceEEEEEecCEEEEE-CCCCCeeEeCCCeEEEEeCCCCceEEEecCCC
Confidence            566789999988875 9999999985 45667789999999999876  7899888876

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.

>COG3822 ABC-type sugar transport system, auxiliary component [General function prediction only]

Probab=96.33  E-value=0.011  Score=52.28  Aligned_cols=62  Identities=26%  Similarity=0.376  Sum_probs=43.3

Q ss_pred             EEEEEcCCCcCCccccCcc-----------------------------EEEEEEeCEEEEEEEeCCeEEEecCCcEEEEC
Q 021698          216 AIVRFKAGSVEPAHHHTFG-----------------------------HDLVVLEGKKSVWNLTKGERFDLTVGDYLFTP  266 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~-----------------------------e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP  266 (309)
                      .++.+.+|...|.|.|...                             ...+.+.|..+-  ...+....|+||.++.+|
T Consensus        89 KiM~vr~gQvtPmHrH~~k~eDiinrgggtlv~el~~~d~~~~~~~ks~vtv~~dg~r~~--~~ag~~lkL~PGesitL~  166 (225)
T COG3822          89 KIMHVRPGQVTPMHRHWRKPEDIINRGGGTLVVELWNVDLVEGQDEKSDVTVPVDGCRQT--HTAGSQLKLSPGESITLP  166 (225)
T ss_pred             eeEEeccCCcCcccccccchhhhhhcCCceEEEEEeccccccCcCCCCCeEecCCCcEEE--eccceeEEECCCCcEecC
Confidence            3567778888888888721                             112233443333  334566789999999999


Q ss_pred             CCCcEEEEEcCCe
Q 021698          267 AGDVHRVKYYEET  279 (309)
Q Consensus       267 ~g~~H~~~n~~d~  279 (309)
                      ||+.|+|++.+..
T Consensus       167 Pg~~HsFwae~g~  179 (225)
T COG3822         167 PGLYHSFWAEEGG  179 (225)
T ss_pred             CCceeeeeecCCc
Confidence            9999999997654

>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]

Probab=96.33  E-value=0.02  Score=48.21  Aligned_cols=84  Identities=26%  Similarity=0.327  Sum_probs=55.6

Q ss_pred             CCCcCCc-cccCccEE-EEEEeCEEEEEEE-eCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEcC----Ccccccc
Q 021698          222 AGSVEPA-HHHTFGHD-LVVLEGKKSVWNL-TKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG----RWDMFFD  294 (309)
Q Consensus       222 pG~~~p~-H~H~~~e~-vyVl~G~l~v~~~-~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~g----~~~i~~~  294 (309)
                      .|+..+. |.|...++ +.|++|+..+++. -+++...+..||++.||+|+-|.-.. +...|.++-..    .|||--.
T Consensus        51 ~g~Vf~yHHYHs~aHEVl~vlrgqA~l~iGG~~G~el~v~~GDvlliPAGvGH~rl~-sS~DF~VvGaYp~G~q~diqtg  129 (163)
T COG4297          51 RGGVFNYHHYHSGAHEVLGVLRGQAGLQIGGADGQELEVGEGDVLLIPAGVGHCRLH-SSADFQVVGAYPPGQQADIQTG  129 (163)
T ss_pred             cccccccccccCCcceEEEEecceeEEEecCCCCceeeecCCCEEEEecCccccccc-CCCCeEEEcccCCcccccccCC
Confidence            3555554 56776655 5689999999431 25677999999999999999997533 33455554332    3443332


Q ss_pred             --hhHHHHHHHHhh
Q 021698          295 --EDLETAKKAVEK  306 (309)
Q Consensus       295 --~~~~~a~~~~~~  306 (309)
                        .|+..|+++|..
T Consensus       130 ~~t~~aear~~I~~  143 (163)
T COG4297         130 APTDLAEARARIKS  143 (163)
T ss_pred             CCccHHHHHHHHHc
Confidence              456888888753

>PRK10572 DNA-binding transcriptional regulator AraC; Provisional

Probab=96.18  E-value=0.012  Score=54.74  Aligned_cols=48  Identities=19%  Similarity=0.263  Sum_probs=40.4

Q ss_pred             cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698          229 HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       229 H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      |.+....+.++++|++.+  .++++.+.+++||.+++||+++|.+....+
T Consensus        45 ~~~~~~~i~~~~~G~~~~--~~~~~~~~~~~g~~i~i~p~~~h~~~~~~~   92 (290)
T PRK10572         45 LGMKGYILNLTIRGQGVI--FNGGRAFVCRPGDLLLFPPGEIHHYGRHPD   92 (290)
T ss_pred             CCccceEEEEEEeccEEE--ecCCeeEecCCCCEEEECCCCceeeccCCC
Confidence            444455678899999999  789999999999999999999999866543

>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]

Probab=96.16  E-value=0.0086  Score=51.82  Aligned_cols=54  Identities=22%  Similarity=0.170  Sum_probs=42.6

Q ss_pred             cCCccccCccEEEEEEeCEEEEEEEe-CCeE--EEecCCcEEEECCCCcEEEEEcCC
Q 021698          225 VEPAHHHTFGHDLVVLEGKKSVWNLT-KGER--FDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       225 ~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~--~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      ....|.|..+|+-|+++|+..+-+.. ++++  ..+..||.+++|+|+-|+|....+
T Consensus        85 FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~~  141 (179)
T KOG2107|consen   85 FFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTPS  141 (179)
T ss_pred             HHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCch
Confidence            34679999999999999999983221 2332  468999999999999999977654

>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1

Probab=95.95  E-value=0.06  Score=47.21  Aligned_cols=66  Identities=18%  Similarity=0.158  Sum_probs=43.7

Q ss_pred             EEEEEcCCCcCCccccCccE-EEEEEeCEEEEEEE--eCC---------eEEEecCCcEEEECCCCcEEEEEcC-CeEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGH-DLVVLEGKKSVWNL--TKG---------ERFDLTVGDYLFTPAGDVHRVKYYE-ETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e-~vyVl~G~l~v~~~--~~~---------~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~  281 (309)
                      .++...||..++.|-|.... ++.|++|+++-+.+  .++         ....+++|..+..+++-.|++.|.+ +...
T Consensus        78 ~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~~~~a  156 (175)
T PF05995_consen   78 WLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSGDEPA  156 (175)
T ss_dssp             EEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-SSS-E
T ss_pred             EEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCCCCCE
Confidence            46788999999999998654 66799999876421  122         2345678888888999999999886 5443

13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.

>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]

Probab=95.94  E-value=0.047  Score=44.91  Aligned_cols=58  Identities=24%  Similarity=0.235  Sum_probs=44.2

Q ss_pred             EEEEcCCCcCCcccc-CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698          217 IVRFKAGSVEPAHHH-TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H-~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      +..-.||.   ++++ +..|+.++|+|+++++ ..+++...+++||++++|+|..=.++-.+.
T Consensus        49 iWe~TpG~---~r~~y~~~E~chil~G~v~~T-~d~Ge~v~~~aGD~~~~~~G~~g~W~V~Et  107 (116)
T COG3450          49 IWECTPGK---FRVTYDEDEFCHILEGRVEVT-PDGGEPVEVRAGDSFVFPAGFKGTWEVLET  107 (116)
T ss_pred             EEEecCcc---ceEEcccceEEEEEeeEEEEE-CCCCeEEEEcCCCEEEECCCCeEEEEEeee
Confidence            34444443   3444 3578889999999996 567889999999999999999877766553

>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins

Probab=95.85  E-value=0.094  Score=40.51  Aligned_cols=55  Identities=25%  Similarity=0.343  Sum_probs=39.9

Q ss_pred             cccCccEE--EEEEeCEEEEEEEeC-----CeEEEecCCcEEEECCCCcEEEEEcCC-eEEEE
Q 021698          229 HHHTFGHD--LVVLEGKKSVWNLTK-----GERFDLTVGDYLFTPAGDVHRVKYYEE-TEFFI  283 (309)
Q Consensus       229 H~H~~~e~--vyVl~G~l~v~~~~~-----~~~~~L~pGd~i~iP~g~~H~~~n~~d-~~~~i  283 (309)
                      |.=..+.|  +-|++|++.+....+     .+...+.+|+..+|+|..+|++...++ ..++|
T Consensus        19 H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~f~l   81 (82)
T PF09313_consen   19 HNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLRFQL   81 (82)
T ss_dssp             BCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-EEEE
T ss_pred             cCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEEEEe
Confidence            43344555  469999999974434     477899999999999999999998885 66653

; PDB: 3BB6_C 3M70_A 3DL3_I.

>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes

Probab=95.81  E-value=0.069  Score=42.65  Aligned_cols=84  Identities=23%  Similarity=0.274  Sum_probs=58.2

Q ss_pred             EEEcCCCcCCcc-ccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc-CCeEEEE----------EE
Q 021698          218 VRFKAGSVEPAH-HHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY-EETEFFI----------KW  285 (309)
Q Consensus       218 v~l~pG~~~p~H-~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~-~d~~~~i----------~~  285 (309)
                      ++++||+..... ...+.-++||++|++++    +++...+++|+.+++.++..=.+.+. .+..+++          ++
T Consensus         4 i~l~~g~~~~~~~~~~~~~~iyv~~G~~~v----~~~~~~~~~~~~~~l~~g~~i~~~a~~~~a~~lll~GePl~Epi~~   79 (104)
T PF05726_consen    4 IKLEPGASFTLPLPPGHNAFIYVLEGSVEV----GGEEDPLEAGQLVVLEDGDEIELTAGEEGARFLLLGGEPLNEPIVQ   79 (104)
T ss_dssp             EEE-TT-EEEEEEETT-EEEEEEEESEEEE----TTTTEEEETTEEEEE-SECEEEEEESSSSEEEEEEEE----S--EE
T ss_pred             EEECCCCEEEeecCCCCEEEEEEEECcEEE----CCCcceECCCcEEEECCCceEEEEECCCCcEEEEEEccCCCCCEEE
Confidence            567777765433 23456788999999887    45557899999999998887788887 5565553          45


Q ss_pred             cCCcccccchhHHHHHHHHh
Q 021698          286 DGRWDMFFDEDLETAKKAVE  305 (309)
Q Consensus       286 ~g~~~i~~~~~~~~a~~~~~  305 (309)
                      -|+|.+.=.+++.+|.+.-+
T Consensus        80 ~GpFVmnt~eeI~qA~~dy~   99 (104)
T PF05726_consen   80 YGPFVMNTREEIEQAFEDYQ   99 (104)
T ss_dssp             ETTEEESSHHHHHHHHHHHH
T ss_pred             ECCcccCCHHHHHHHHHHHH
Confidence            56777777788999987654

The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.

>COG1741 Pirin-related protein [General function prediction only]

Probab=95.46  E-value=0.048  Score=51.36  Aligned_cols=69  Identities=22%  Similarity=0.189  Sum_probs=54.6

Q ss_pred             EEcCCCcCCccccCccEEE-EEEeCEEEEEEEeCCeEEEecCCcEEEECCC--CcEEEEEc--CC--eEEEEEEcCC
Q 021698          219 RFKAGSVEPAHHHTFGHDL-VVLEGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYY--EE--TEFFIKWDGR  288 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~~e~v-yVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g--~~H~~~n~--~d--~~~~i~~~g~  288 (309)
                      .+.||...++|.|+..|.+ ||++|+++-+ ...+..-.+.|||.-|+-+|  +.|+=.|.  .+  ...+-+|...
T Consensus        50 ~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr-DS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~l  125 (276)
T COG1741          50 VLAPGRGFPPHPHRGLETVTYVLDGEIEHR-DSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVNL  125 (276)
T ss_pred             cccCCCcCCCCCCCCcEEEEEEEccEEEEe-ecCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecCC
Confidence            4678888999999998875 9999999996 45677789999999999976  78988876  23  3445566554

>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors

Probab=95.31  E-value=0.11  Score=49.62  Aligned_cols=58  Identities=22%  Similarity=0.193  Sum_probs=39.9

Q ss_pred             EcCCC--cCCccccCccEEEEEEeCEEEEEEEe---------------------CCeEEEecCCcEEEECCCCcEEEEEc
Q 021698          220 FKAGS--VEPAHHHTFGHDLVVLEGKKSVWNLT---------------------KGERFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       220 l~pG~--~~p~H~H~~~e~vyVl~G~l~v~~~~---------------------~~~~~~L~pGd~i~iP~g~~H~~~n~  276 (309)
                      +.|++  ..++|+=...-+++=++|+-+.++..                     ....++|.|||.+|+|+|.+|...+.
T Consensus       120 ~tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~  199 (319)
T PF08007_consen  120 LTPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTT  199 (319)
T ss_dssp             EETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEES
T ss_pred             ecCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCC
Confidence            44544  66889888888888899987765432                     12358999999999999999999998


Q ss_pred             C
Q 021698          277 E  277 (309)
Q Consensus       277 ~  277 (309)
                      +
T Consensus       200 ~  200 (319)
T PF08007_consen  200 D  200 (319)
T ss_dssp             S
T ss_pred             C
Confidence            8

The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.

>PRK09685 DNA-binding transcriptional activator FeaR; Provisional

Probab=94.36  E-value=0.16  Score=47.35  Aligned_cols=45  Identities=16%  Similarity=0.148  Sum_probs=38.3

Q ss_pred             cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          234 GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       234 ~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      ..++++++|.+.+  ..+++.+.++|||.+++|++.+|.+...++..
T Consensus        72 ~~l~~~~~G~~~~--~~~g~~~~l~~G~~~l~~~~~p~~~~~~~~~~  116 (302)
T PRK09685         72 FFTVFQLSGHAII--EQDDRQVQLAAGDITLIDASRPCSIYPQGLSE  116 (302)
T ss_pred             EEEEEEecceEEE--EECCeEEEEcCCCEEEEECCCCcEeecCCCce
Confidence            3456789999999  67999999999999999999999987666543

>PF12852 Cupin_6: Cupin

Probab=94.25  E-value=0.17  Score=44.15  Aligned_cols=43  Identities=28%  Similarity=0.380  Sum_probs=35.6

Q ss_pred             cEEEEEEeCEEEEEEEeC--CeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698          234 GHDLVVLEGKKSVWNLTK--GERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       234 ~e~vyVl~G~l~v~~~~~--~~~~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      ..+.+|++|+..+  .++  +....|.+||.+++|.|.+|.+....+
T Consensus        36 ~~fh~V~~G~~~l--~~~~~~~~~~L~~GDivllp~g~~H~l~~~~~   80 (186)
T PF12852_consen   36 ASFHVVLRGSCWL--RVPGGGEPIRLEAGDIVLLPRGTAHVLSSDPD   80 (186)
T ss_pred             eEEEEEECCeEEE--EEcCCCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence            4566899999998  544  478999999999999999999955443

>PF14272 Gly_rich_SFCGS: Glycine-rich SFCGS

Probab=94.23  E-value=0.1  Score=41.46  Aligned_cols=77  Identities=22%  Similarity=0.324  Sum_probs=53.6

Q ss_pred             HHHHHHhhcCCCCCCcceEEEEecCc-hhhhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHH
Q 021698           54 AEVGRRVSSSDSSETTTRGLVACGTG-VGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILD  132 (309)
Q Consensus        54 ~~va~~v~~~~~~~~~~~gi~~cgtG-~G~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~  132 (309)
                      .++.+...+    ..+|+||-+|||| .|.-++.||+ |--+-.---.-++-.+...+.+|||-||.. =-+|+.+++++
T Consensus        36 mklGdvM~~----e~Ad~GiSFCGSGGAGAitA~tKy-gy~~~~gmRSv~~GvTAi~~G~~VlGFGFm-D~EeLG~rlve  109 (115)
T PF14272_consen   36 MKLGDVMKK----ENADFGISFCGSGGAGAITAQTKY-GYKARHGMRSVDEGVTAINEGKKVLGFGFM-DKEELGRRLVE  109 (115)
T ss_pred             chHHHHHHh----hCCCcceEEecCCCccceeecccc-CCchhcCccchhhhHHHHHcCCeEEeeccc-cHHHHHHHHHH
Confidence            456666666    6889999999997 4555666766 433333333345556666789999998854 34677799999


Q ss_pred             HHhc
Q 021698          133 TWLK  136 (309)
Q Consensus       133 ~~l~  136 (309)
                      +|..
T Consensus       110 ~~~k  113 (115)
T PF14272_consen  110 AYIK  113 (115)
T ss_pred             HHHh
Confidence            9975

>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]

Probab=94.21  E-value=0.18  Score=44.37  Aligned_cols=65  Identities=17%  Similarity=0.183  Sum_probs=46.7

Q ss_pred             CCCcCCccccCc--cEEEEEEeCEEEEEEEe---CC----e--EEEecCC--cEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          222 AGSVEPAHHHTF--GHDLVVLEGKKSVWNLT---KG----E--RFDLTVG--DYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       222 pG~~~p~H~H~~--~e~vyVl~G~l~v~~~~---~~----~--~~~L~pG--d~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      +|....+|.|..  .+++.|++|++......   +.    +  ...+.+.  ..+|||+|..|.+.+.++...++.+.
T Consensus        54 ~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~~~~y~~  131 (173)
T COG1898          54 PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDAEVVYKV  131 (173)
T ss_pred             CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCceEEEEEe
Confidence            777778998865  46788999998874211   22    1  1355544  68999999999999999876555443

>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A

Probab=93.89  E-value=0.43  Score=42.69  Aligned_cols=24  Identities=38%  Similarity=0.487  Sum_probs=19.2

Q ss_pred             eEEEecCCcEEEECCCCcEEEEEc
Q 021698          253 ERFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       253 ~~~~L~pGd~i~iP~g~~H~~~n~  276 (309)
                      -..+|.|||.+|||+|-.|.+.+.
T Consensus       209 ~~~~l~pGD~LfiP~gWwH~V~~~  232 (251)
T PF13621_consen  209 YEVVLEPGDVLFIPPGWWHQVENL  232 (251)
T ss_dssp             EEEEEETT-EEEE-TT-EEEEEES
T ss_pred             eEEEECCCeEEEECCCCeEEEEEc
Confidence            346899999999999999999999

...

>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism

Probab=93.75  E-value=0.28  Score=48.86  Aligned_cols=53  Identities=23%  Similarity=0.249  Sum_probs=39.5

Q ss_pred             cCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698          231 HTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       231 H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~  285 (309)
                      ...++++|+-+|++++  .++=+...+.|||+++||.|+.+++.-.++...+++-
T Consensus       144 aDGD~Li~~q~G~l~l--~Te~G~L~v~pGd~~VIPRG~~~rv~l~~p~rgyi~E  196 (424)
T PF04209_consen  144 ADGDELIFPQQGSLRL--ETEFGRLDVRPGDYVVIPRGTRFRVELPGPARGYIIE  196 (424)
T ss_dssp             SSEEEEEEEEES-EEE--EETTEEEEE-TTEEEEE-TT--EEEE-SSSEEEEEEE
T ss_pred             CCCCEEEEEEECCEEE--EecCeeEEEcCCeEEEECCeeEEEEEeCCCceEEEEE
Confidence            3556778999999999  6788889999999999999999999888777766654

The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=93.61  E-value=1.2  Score=37.47  Aligned_cols=128  Identities=16%  Similarity=0.097  Sum_probs=74.5

Q ss_pred             CCcEEEEEe---CcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698           11 HPLKIIAGA---DSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        11 ~~mkI~ig~---D~~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN   87 (309)
                      |+.||++++   |.-...+ ..+.-.|+.+||+|+|+|.+-.++   .+.+.+.+    ...+.-.+-|-.+..+..+  
T Consensus         2 ~~~~vl~~~~~gD~H~lG~-~iv~~~lr~~G~eVi~LG~~vp~e---~i~~~a~~----~~~d~V~lS~~~~~~~~~~--   71 (137)
T PRK02261          2 KKKTVVLGVIGADCHAVGN-KILDRALTEAGFEVINLGVMTSQE---EFIDAAIE----TDADAILVSSLYGHGEIDC--   71 (137)
T ss_pred             CCCEEEEEeCCCChhHHHH-HHHHHHHHHCCCEEEECCCCCCHH---HHHHHHHH----cCCCEEEEcCccccCHHHH--
Confidence            456787774   5445555 577788999999999999965433   33333333    2344443434334332222  


Q ss_pred             CCCceEEEEeCCHHHHHHHHhh--cCcceeeeccc-ccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhhhcc
Q 021698           88 KNPGVFATTCLTPADALNTRSI--NNCNVLAVSGM-STSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMT  164 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~h--NnaNvl~~g~~-~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~s~~  164 (309)
                                  .....+-|+.  .+.. +.+|+. .++.....++.+.+.+--|+.-|+.+-   .+++|.+|+.+-.+
T Consensus        72 ------------~~~~~~L~~~~~~~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~---~~~~i~~~l~~~~~  135 (137)
T PRK02261         72 ------------RGLREKCIEAGLGDIL-LYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT---DPEEAIDDLKKDLN  135 (137)
T ss_pred             ------------HHHHHHHHhcCCCCCe-EEEECCCCCCccChHHHHHHHHHcCCCEEECcCC---CHHHHHHHHHHHhc
Confidence                        1222333343  2333 445554 567777777777777777765555544   34788888877554

>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase

Probab=93.39  E-value=0.46  Score=41.85  Aligned_cols=65  Identities=22%  Similarity=0.224  Sum_probs=46.3

Q ss_pred             cCCCcCCcccc---CccEEEEEEeCEEEEEEEeCC--------e--EEEecC--CcEEEECCCCcEEEEEcCCe-EEEEE
Q 021698          221 KAGSVEPAHHH---TFGHDLVVLEGKKSVWNLTKG--------E--RFDLTV--GDYLFTPAGDVHRVKYYEET-EFFIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H---~~~e~vyVl~G~l~v~~~~~~--------~--~~~L~p--Gd~i~iP~g~~H~~~n~~d~-~~~i~  284 (309)
                      .+|....+|.|   .+..++.|++|++... .+|-        +  ...|.+  +..+|||+|+.|.+.+.++. .+...
T Consensus        52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV-~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~a~v~Y~  130 (176)
T TIGR01221        52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDV-AVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDEAEFLYK  130 (176)
T ss_pred             cCCEEEEEEECCCCCCceEEEEccCCEEEE-EEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCCeEEEEe
Confidence            45776788887   3678999999998874 2221        1  356666  55999999999999998864 44433


Q ss_pred             Ec
Q 021698          285 WD  286 (309)
Q Consensus       285 ~~  286 (309)
                      .+
T Consensus       131 ~~  132 (176)
T TIGR01221       131 CT  132 (176)
T ss_pred             CC
Confidence            33

This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen

>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5

Probab=93.11  E-value=0.82  Score=40.25  Aligned_cols=67  Identities=21%  Similarity=0.293  Sum_probs=46.1

Q ss_pred             EcCCCcCCccccCc----cEEEEEEeCEEEEEEEeC--------Ce--EEEecCCc--EEEECCCCcEEEEEcCCe-EEE
Q 021698          220 FKAGSVEPAHHHTF----GHDLVVLEGKKSVWNLTK--------GE--RFDLTVGD--YLFTPAGDVHRVKYYEET-EFF  282 (309)
Q Consensus       220 l~pG~~~p~H~H~~----~e~vyVl~G~l~v~~~~~--------~~--~~~L~pGd--~i~iP~g~~H~~~n~~d~-~~~  282 (309)
                      -.+|....+|.|..    ..++.|++|++... .+|        ++  ...|.++.  .+|||+|+.|.+.+.++. .+.
T Consensus        50 s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV-~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d~a~v~  128 (176)
T PF00908_consen   50 SKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDV-AVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLEDDAEVL  128 (176)
T ss_dssp             EETTBEEEEEEESTTT-EEEEEEEEESEEEEE-EEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSSEEEEE
T ss_pred             ccccEEEEEEEecCCCCCCcEEEEecCeEEEE-EEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccCceEEE
Confidence            34577778887765    47888999998864 233        22  25666665  799999999999999975 444


Q ss_pred             EEEcC
Q 021698          283 IKWDG  287 (309)
Q Consensus       283 i~~~g  287 (309)
                      +..+.
T Consensus       129 Y~~t~  133 (176)
T PF00908_consen  129 YKVTN  133 (176)
T ss_dssp             EEESS
T ss_pred             EecCC
Confidence            44443

1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....

>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice []

Probab=92.98  E-value=0.17  Score=40.04  Aligned_cols=29  Identities=28%  Similarity=0.479  Sum_probs=22.3

Q ss_pred             eEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          253 ERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       253 ~~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      .+...+|||++++|||..|.+.|.+++..
T Consensus        81 ~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~  109 (114)
T PF02373_consen   81 YRFVQKPGEFVFIPPGAYHQVFNLGDNIS  109 (114)
T ss_dssp             EEEEEETT-EEEE-TT-EEEEEESSSEEE
T ss_pred             ccceECCCCEEEECCCceEEEEeCCceEE
Confidence            45778899999999999999999997643

There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....

>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length

Probab=92.75  E-value=0.98  Score=41.16  Aligned_cols=29  Identities=21%  Similarity=0.243  Sum_probs=20.6

Q ss_pred             CCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          251 KGERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       251 ~~~~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      .+....|.||+++.++||..|+|+..+..
T Consensus       152 aG~~l~L~PGESiTL~Pg~yH~Fw~e~g~  180 (225)
T PF07385_consen  152 AGTQLRLNPGESITLPPGIYHWFWGEGGD  180 (225)
T ss_dssp             TT-EEEE-TT-EEEE-TTEEEEEEE-TTS
T ss_pred             CCceEEeCCCCeEeeCCCCeeeEEecCCC
Confidence            35567899999999999999999998765

The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.

>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB)

Probab=92.59  E-value=0.81  Score=42.80  Aligned_cols=68  Identities=25%  Similarity=0.319  Sum_probs=49.6

Q ss_pred             EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC-eEEEecCC--------cEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG-ERFDLTVG--------DYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~-~~~~L~pG--------d~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      .+++++|.....-....+-.++.|+|++++  ..++ +.+.+..-        |++|+|+|..=.+.+.++.++.+...
T Consensus        31 ~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v--~~~g~~~~~l~~R~~vF~~~~d~lYvp~g~~~~i~a~~~ae~~~~sa  107 (261)
T PF04962_consen   31 VLRLEAGESLEFELERRELGVVNLGGKATV--TVDGEEFYELGGRESVFDGPPDALYVPRGTKVVIFASTDAEFAVCSA  107 (261)
T ss_dssp             CEEEECCHCCCCCCCSEEEEEEEESSSEEE--EETTEEEEEE-TTSSGGGS--EEEEE-TT--EEEEESSTEEEEEEEE
T ss_pred             EEEecCCCEEeccCCCcEEEEEEeCCEEEE--EeCCceEEEecccccccCCCCcEEEeCCCCeEEEEEcCCCEEEEEcc
Confidence            468888877665544445556789999999  6677 78888887        99999999999999988888776544

KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.

>PHA00672 hypothetical protein

Probab=92.58  E-value=0.6  Score=38.93  Aligned_cols=82  Identities=18%  Similarity=0.240  Sum_probs=63.7

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEcCCcccccch
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDE  295 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~g~~~i~~~~  295 (309)
                      ..++++.|....--.|..+.+ .+++|.+++  .++++...|..=..+--|+|....+.+..|+...       .+|..+
T Consensus        50 Rei~IPkGt~LtG~~hkf~~~-ii~sG~itV--~tdge~~rl~g~~~i~~~aG~KragyAHeDT~wt-------~~h~se  119 (152)
T PHA00672         50 RTIRIPAGVALTGALIKVSTV-LIFSGHATV--FIGGEAVELRGYHVIPASAGRKQAFVAHADTDLT-------MLFPSE  119 (152)
T ss_pred             EEEeccCceeeeeeeeEeeEE-EEecccEEE--EeCCcEEEEecceeeecCCCcccceeeeccceEE-------EEeccc
Confidence            467888998887778888888 889999999  8899999998888888899999888888888764       233332


Q ss_pred             --hHHHHHHHHhhh
Q 021698          296 --DLETAKKAVEKE  307 (309)
Q Consensus       296 --~~~~a~~~~~~~  307 (309)
                        ++..|...++.|
T Consensus       120 er~v~~a~a~~~~~  133 (152)
T PHA00672        120 ARSVAEAEAEFTDE  133 (152)
T ss_pred             cccHHHHHhhcccH
Confidence              356666665543

>TIGR03577 EF_0830 conserved hypothetical protein EF_0830/AHA_3911

Probab=91.93  E-value=0.39  Score=38.20  Aligned_cols=77  Identities=23%  Similarity=0.302  Sum_probs=51.4

Q ss_pred             HHHHHHhhcCCCCCCcceEEEEecCch-hhhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHH
Q 021698           54 AEVGRRVSSSDSSETTTRGLVACGTGV-GVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILD  132 (309)
Q Consensus        54 ~~va~~v~~~~~~~~~~~gi~~cgtG~-G~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~  132 (309)
                      .++.+-..+    ..+|+||-+||||= |.-++-||+ |-.|-.---.-++-.+.-...+|||-||.. =-+|+.+++++
T Consensus        36 mklGdVM~~----e~Ad~GiSFCGSGGAGAitAqtky-Gyk~~~gmRSveeGvTAi~eG~~VlGFGFm-D~EeLG~rlve  109 (115)
T TIGR03577        36 MKLGDVMKQ----ENADLGISFCGSGGAGAITAQTKY-GYKARYGMRSVEEGVTAINEGKNVLGFGFM-DKEELGKRLTE  109 (115)
T ss_pred             chHHHHHhh----hcCccceEEecCCCccceeecccc-CCccccCccchhhhHHHHhcCCeEEeeccc-cHHHHHHHHHH
Confidence            355666655    67899999999974 555566765 544444333334444555578899888754 34667799999


Q ss_pred             HHhc
Q 021698          133 TWLK  136 (309)
Q Consensus       133 ~~l~  136 (309)
                      +|..
T Consensus       110 a~~k  113 (115)
T TIGR03577       110 AFLK  113 (115)
T ss_pred             HHHh
Confidence            9975

Members of this family of small (about 120 amino acid), relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=91.88  E-value=1.4  Score=41.73  Aligned_cols=49  Identities=27%  Similarity=0.259  Sum_probs=37.3

Q ss_pred             cCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          231 HTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       231 H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      +....+++|++|++++  ..++....|++|++++||++...... .++..++
T Consensus       251 ~~~~~il~v~~G~~~i--~~~~~~~~l~~G~~~~ipa~~~~~~i-~g~~~~~  299 (302)
T TIGR00218       251 QQSALILSVLEGSGRI--KSGGKTLPLKKGESFFIPAHLGPFTI-EGECEAI  299 (302)
T ss_pred             CCCcEEEEEEcceEEE--EECCEEEEEecccEEEEccCCccEEE-EeeEEEE
Confidence            4456778899999999  56888899999999999998854333 3444444

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PF14525 AraC_binding_2: AraC-binding-like domain

Probab=91.82  E-value=0.79  Score=38.31  Aligned_cols=46  Identities=17%  Similarity=0.317  Sum_probs=39.6

Q ss_pred             EEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          235 HDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       235 e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      -+.++++|...+  ..+++...+.||+.++++++.++.+...++...+
T Consensus        57 ~l~~~~~G~~~~--~~~g~~~~~~pg~~~l~d~~~~~~~~~~~~~~~~  102 (172)
T PF14525_consen   57 LLVLPLSGSARI--EQGGREVELAPGDVVLLDPGQPYRLEFSAGCRQL  102 (172)
T ss_pred             EEEEEccCCEEE--EECCEEEEEcCCeEEEEcCCCCEEEEECCCccEE
Confidence            345689999999  6799999999999999999999999888765544

>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1

Probab=91.77  E-value=0.53  Score=40.67  Aligned_cols=63  Identities=14%  Similarity=0.136  Sum_probs=43.9

Q ss_pred             EEEEEcCCCcCCccccCcc-----EEEEEE-eCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          216 AIVRFKAGSVEPAHHHTFG-----HDLVVL-EGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~-----e~vyVl-~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      .+.++.||+.+.+|.-...     ++.++. .+...+  .++++.+..++|.++++....+|.+.|.++..
T Consensus        83 ~~s~l~pg~~I~pH~d~~~~~lR~Hl~L~~p~~~~~~--~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~~  151 (163)
T PF05118_consen   83 RFSRLPPGTHIKPHRDPTNLRLRLHLPLIVPNPGCYI--RVGGETRHWREGECWVFDDSFEHEVWNNGDED  151 (163)
T ss_dssp             EEEEEECTEEEEEE-SS-TTEEEEEEEEC--STTEEE--EETTEEEB--CTEEEEE-TTS-EEEEESSSS-
T ss_pred             EEEEECCCCEECCeeCCCCcceEEEEEEEcCCCCeEE--EECCeEEEeccCcEEEEeCCEEEEEEeCCCCC
Confidence            4678899999999987643     333444 355666  67999999999999999999999999998653

14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.

>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]

Probab=91.20  E-value=0.52  Score=42.64  Aligned_cols=62  Identities=16%  Similarity=0.116  Sum_probs=48.1

Q ss_pred             EEcCCCcCCccccCccEEEEEEeCEEEEEEEe--CCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          219 RFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT--KGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~--~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      .--|+.....|-.+.+|++|-++|.+.+.+..  +-+...++.||.+.+|+.++|+..-..++.
T Consensus        39 VGGPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFantv  102 (279)
T KOG3995|consen   39 VGGPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTV  102 (279)
T ss_pred             ecCCCcccccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhccce
Confidence            33566777889999999999999999886322  224578999999999999999865555443

>TIGR01015 hmgA homogentisate 1,2-dioxygenase

Probab=91.01  E-value=0.81  Score=45.54  Aligned_cols=53  Identities=19%  Similarity=0.135  Sum_probs=43.9

Q ss_pred             ccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          230 HHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       230 ~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      -...++++|+-+|.+.+  .++=....+.|||+++||.|+.+++.-.+....+|+
T Consensus       145 NaDGD~Livpq~G~l~i--~TEfG~L~v~pgei~VIPRG~~frv~l~gp~rgyi~  197 (429)
T TIGR01015       145 NADGDFLIVPQQGALLI--TTEFGRLLVEPNEICVIPRGVRFRVTVLEPARGYIC  197 (429)
T ss_pred             ccCCCEEEEEEeCcEEE--EEeccceEecCCCEEEecCccEEEEeeCCCceEEEE
Confidence            44667788999999999  667778899999999999999999987666666554

Missing in human disease alkaptonuria.

>COG2850 Uncharacterized conserved protein [Function unknown]

Probab=89.82  E-value=0.4  Score=46.71  Aligned_cols=59  Identities=19%  Similarity=0.177  Sum_probs=44.9

Q ss_pred             EEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCe----------------------EEEecCCcEEEECCCCcEEEEEc
Q 021698          219 RFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGE----------------------RFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~----------------------~~~L~pGd~i~iP~g~~H~~~n~  276 (309)
                      -..+|+....|+-....+++-..|+-+.+  ++..                      .+++.|||.+||||+.+|.-...
T Consensus       125 ~a~~GGgvg~H~D~YDVfliQg~G~RRW~--v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~gvae  202 (383)
T COG2850         125 FAAPGGGVGPHFDQYDVFLIQGQGRRRWR--VGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYGVAE  202 (383)
T ss_pred             EecCCCccCccccchheeEEeecccceee--cCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCCccc
Confidence            34678888999888887777777776663  3322                      35788999999999999998776


Q ss_pred             CCe
Q 021698          277 EET  279 (309)
Q Consensus       277 ~d~  279 (309)
                      .++
T Consensus       203 ~dc  205 (383)
T COG2850         203 DDC  205 (383)
T ss_pred             ccc
Confidence            554

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit

Probab=89.65  E-value=5.6  Score=33.51  Aligned_cols=113  Identities=12%  Similarity=0.075  Sum_probs=65.0

Q ss_pred             HHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCCCceEEEEeCCHHHHHHH
Q 021698           27 KDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNT  106 (309)
Q Consensus        27 k~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~~giraa~~~~~~~A~~~  106 (309)
                      |+.+...|++.||+|+|+|.+--+   .++.+++.+    ..++ .| ..++=+|-.|..  +          ....++.
T Consensus        18 k~iv~~~l~~~GfeVi~LG~~v~~---e~~v~aa~~----~~ad-iV-glS~l~~~~~~~--~----------~~~~~~l   76 (134)
T TIGR01501        18 NKILDHAFTNAGFNVVNLGVLSPQ---EEFIKAAIE----TKAD-AI-LVSSLYGHGEID--C----------KGLRQKC   76 (134)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCH---HHHHHHHHH----cCCC-EE-EEecccccCHHH--H----------HHHHHHH
Confidence            688889999999999999996443   334444443    1222 22 112211222211  1          1233444


Q ss_pred             HhhcCcce-eeeccc-ccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhhhc
Q 021698          107 RSINNCNV-LAVSGM-STSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSM  163 (309)
Q Consensus       107 r~hNnaNv-l~~g~~-~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~s~  163 (309)
                      |+.+-.++ +.+|+. +++++...+..+.+.+.-|+.-|+.+-   .+++|.+|+...+
T Consensus        77 ~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt---~~~~iv~~l~~~~  132 (134)
T TIGR01501        77 DEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGT---PPEVVIADLKKDL  132 (134)
T ss_pred             HHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCC---CHHHHHHHHHHHh
Confidence            55443344 446666 578877777666666677766555444   3378888887765

This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.

>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=89.26  E-value=0.99  Score=43.98  Aligned_cols=61  Identities=20%  Similarity=0.195  Sum_probs=45.8

Q ss_pred             EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-CeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-~~~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      ..++++|.....-.-+...++.|++|+.++  ..+ +....+.+||.+|||++.+=.+...+|.
T Consensus       337 ~~~v~~g~~~~~~~~~~~SIllv~~G~g~l--~~~t~~~~~v~rG~V~fI~a~~~i~~~~~sd~  398 (411)
T KOG2757|consen  337 ETKVPTGESYKFPGVDGPSILLVLKGSGIL--KTDTDSKILVNRGDVLFIPANHPIHLSSSSDP  398 (411)
T ss_pred             EeecCCCceEEeecCCCceEEEEEecceEE--ecCCCCceeeccCcEEEEcCCCCceeeccCcc
Confidence            345565554444445566788999999999  566 8889999999999999988777665543

>PRK05341 homogentisate 1,2-dioxygenase; Provisional

Probab=88.73  E-value=1.5  Score=43.76  Aligned_cols=53  Identities=17%  Similarity=0.185  Sum_probs=42.4

Q ss_pred             ccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC-CeEEEEE
Q 021698          230 HHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIK  284 (309)
Q Consensus       230 ~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~i~  284 (309)
                      -...++++|+-+|++.+  .++=....+.|||+++||.|+.+++.-.+ ....+|+
T Consensus       151 NaDGD~Livpq~G~l~i--~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~  204 (438)
T PRK05341        151 NADGELLIVPQQGRLRL--ATELGVLDVEPGEIAVIPRGVKFRVELPDGPARGYVC  204 (438)
T ss_pred             cCCCCEEEEEEeCCEEE--EEeccceEecCCCEEEEcCccEEEEecCCCCeeEEEE
Confidence            34567788999999999  67778899999999999999999997533 5555443

>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria

Probab=88.64  E-value=0.97  Score=33.02  Aligned_cols=55  Identities=16%  Similarity=0.103  Sum_probs=38.0

Q ss_pred             EEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEE
Q 021698          218 VRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRV  273 (309)
Q Consensus       218 v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~  273 (309)
                      +++.||....++...... +-|.+|.+-++..-+.+.+.|.|||.+.+++|..=.+
T Consensus         2 ~~L~~g~~~~lr~~~~~~-l~v~~G~vWlT~~g~~~D~~L~~G~~l~l~~g~~vvl   56 (63)
T PF11142_consen    2 FELAPGETLSLRAAAGQR-LRVESGRVWLTREGDPDDYWLQAGDSLRLRRGGRVVL   56 (63)
T ss_pred             EEeCCCceEEeEcCCCcE-EEEccccEEEECCCCCCCEEECCCCEEEeCCCCEEEE
Confidence            456677777666555444 7889998777422234669999999999998865433

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=88.43  E-value=1.2  Score=41.76  Aligned_cols=62  Identities=18%  Similarity=0.218  Sum_probs=43.1

Q ss_pred             CCCcCCccccCc--cEEEEEEeCEEEEEEEeCCeE----EEecC-CcEEEECCCCcEEEEEcC-CeEEEE
Q 021698          222 AGSVEPAHHHTF--GHDLVVLEGKKSVWNLTKGER----FDLTV-GDYLFTPAGDVHRVKYYE-ETEFFI  283 (309)
Q Consensus       222 pG~~~p~H~H~~--~e~vyVl~G~l~v~~~~~~~~----~~L~p-Gd~i~iP~g~~H~~~n~~-d~~~~i  283 (309)
                      |++....|.|..  .+.+.|++|++.+....++..    ..+.| +..-++||+..|++...+ +..+++
T Consensus        20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l   89 (287)
T PRK12335         20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQL   89 (287)
T ss_pred             hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEE
Confidence            567778899953  456789999999853322221    34455 456579999999999885 666654

>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine

Probab=88.42  E-value=1.1  Score=40.22  Aligned_cols=67  Identities=22%  Similarity=0.270  Sum_probs=46.0

Q ss_pred             EEEEEcCCCcCCccccCccEEE-EEEeCEEEEEEE--eCC---e------E---------EEecCCc-EEEECCC--CcE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDL-VVLEGKKSVWNL--TKG---E------R---------FDLTVGD-YLFTPAG--DVH  271 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~v-yVl~G~l~v~~~--~~~---~------~---------~~L~pGd-~i~iP~g--~~H  271 (309)
                      .++.+++|..+|.|-|+....+ -||.|++.++-+  ++.   .      .         ..-.+++ ++..|..  ..|
T Consensus        47 ~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~~~~~~~~~~~~~~~~a~~~~d~~~~a~~~~~vL~P~~ggNiH  126 (200)
T PF07847_consen   47 GIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWVDEPSDSIEGQRQPRLARLVVDGEMTAPSDTCVLYPTSGGNIH  126 (200)
T ss_pred             EEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEccccccccccccccccceeeEEEecceecCCCCCeEEccCCCCeeE
Confidence            6788999999999999998765 599999998521  110   0      0         0222333 5555554  899


Q ss_pred             EEEEcC-CeEEE
Q 021698          272 RVKYYE-ETEFF  282 (309)
Q Consensus       272 ~~~n~~-d~~~~  282 (309)
                      ++.+.+ .+.++
T Consensus       127 ~f~a~~~p~Afl  138 (200)
T PF07847_consen  127 EFTALTGPCAFL  138 (200)
T ss_pred             EEEeCCCCeEEE
Confidence            999998 55554

Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process

>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]

Probab=88.18  E-value=5.5  Score=38.25  Aligned_cols=38  Identities=32%  Similarity=0.502  Sum_probs=33.5

Q ss_pred             cCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCc
Q 021698          231 HTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDV  270 (309)
Q Consensus       231 H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~  270 (309)
                      +..-.+++|++|++++  ..+++++.|++|++++||+...
T Consensus       258 ~~~~~il~v~eG~~~l--~~~~~~~~l~~G~s~~ipa~~~  295 (312)
T COG1482         258 QESFSILLVLEGEGTL--IGGGQTLKLKKGESFFIPANDG  295 (312)
T ss_pred             CCCcEEEEEEcCeEEE--ecCCEEEEEcCCcEEEEEcCCC
Confidence            3477889999999999  6789999999999999999844

>PRK15131 mannose-6-phosphate isomerase; Provisional

Probab=87.95  E-value=2  Score=42.50  Aligned_cols=47  Identities=15%  Similarity=0.180  Sum_probs=36.1

Q ss_pred             ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          233 FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       233 ~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ...+++|++|++++  ..+++.+.|++|+++|+|++...... .++..++
T Consensus       339 ~~~Illv~~G~~~i--~~~~~~~~l~~G~~~fipa~~~~~~~-~g~~~~~  385 (389)
T PRK15131        339 SAAILFCVEGEAVL--WKGEQQLTLKPGESAFIAANESPVTV-SGHGRLA  385 (389)
T ss_pred             CcEEEEEEcceEEE--EeCCeEEEECCCCEEEEeCCCccEEE-ecccEEE
Confidence            45778899999999  56888899999999999998765443 2443333

>PLN02658 homogentisate 1,2-dioxygenase

Probab=87.33  E-value=2.1  Score=42.78  Aligned_cols=53  Identities=13%  Similarity=0.158  Sum_probs=42.4

Q ss_pred             ccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc-CCeEEEEE
Q 021698          230 HHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY-EETEFFIK  284 (309)
Q Consensus       230 ~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~-~d~~~~i~  284 (309)
                      -+..++++|+-+|.+.+  .++=....+.|||+++||.|+.+++.-. +....+|+
T Consensus       144 NaDGD~Livpq~G~l~i--~TEfG~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~  197 (435)
T PLN02658        144 NADGDFLIVPQQGRLWI--KTELGKLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVL  197 (435)
T ss_pred             cCCCCEEEEEEeCCEEE--EEeccceEecCCCEEEecCccEEEEecCCCCeeEEEE
Confidence            44567778999999999  6677788999999999999999999754 35555443

>PLN02288 mannose-6-phosphate isomerase

Probab=86.93  E-value=1.6  Score=43.31  Aligned_cols=52  Identities=21%  Similarity=0.220  Sum_probs=36.5

Q ss_pred             EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeE--EEecCCcEEEECCCCc
Q 021698          217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER--FDLTVGDYLFTPAGDV  270 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~--~~L~pGd~i~iP~g~~  270 (309)
                      .+++.+|.......+....+++|++|++++  ..+++.  ..|++|+++|+|++..
T Consensus       338 ~~~l~~~~~~~~~~~~gp~Illv~~G~~~i--~~~~~~~~~~l~~G~~~fv~a~~~  391 (394)
T PLN02288        338 HCDVPPGASVVFPAVPGPSVFLVIEGEGVL--STGSSEDGTAAKRGDVFFVPAGTE  391 (394)
T ss_pred             EEEeCCCCeEeecCCCCCEEEEEEcCEEEE--ecCCccceEEEeceeEEEEeCCCc
Confidence            345555543222225566889999999999  445554  6799999999998753

>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes

Probab=86.86  E-value=0.31  Score=37.19  Aligned_cols=20  Identities=40%  Similarity=0.846  Sum_probs=16.9

Q ss_pred             eEEEEecCchhhhhhh-cCCC
Q 021698           71 RGLVACGTGVGVAIFA-NKNP   90 (309)
Q Consensus        71 ~gi~~cgtG~G~~i~a-NK~~   90 (309)
                      +-+++||+|+|.|+.+ +|++
T Consensus         1 kIlvvC~~Gi~TS~~~~~~i~   21 (90)
T PF02302_consen    1 KILVVCGSGIGTSLMVANKIK   21 (90)
T ss_dssp             EEEEEESSSSHHHHHHHHHHH
T ss_pred             CEEEECCChHHHHHHHHHHHH
Confidence            4689999999999999 7653

The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....

>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)

Probab=85.22  E-value=0.29  Score=38.58  Aligned_cols=19  Identities=26%  Similarity=0.543  Sum_probs=17.1

Q ss_pred             EEEEecCchhhhhhhcCCC
Q 021698           72 GLVACGTGVGVAIFANKNP   90 (309)
Q Consensus        72 gi~~cgtG~G~~i~aNK~~   90 (309)
                      -+++||+|++.|++++|++
T Consensus         2 Il~~Cg~G~sTS~~~~ki~   20 (96)
T cd05564           2 ILLVCSAGMSTSILVKKMK   20 (96)
T ss_pred             EEEEcCCCchHHHHHHHHH
Confidence            4789999999999999884

In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=83.38  E-value=0.47  Score=37.46  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=19.1

Q ss_pred             ceEEEEecCchhhhhhhcCCCc
Q 021698           70 TRGLVACGTGVGVAIFANKNPG   91 (309)
Q Consensus        70 ~~gi~~cgtG~G~~i~aNK~~g   91 (309)
                      -+-+++||+|++.|+.+||.+-
T Consensus         4 ~~ILl~C~~G~sSS~l~~k~~~   25 (95)
T TIGR00853         4 TNILLLCAAGMSTSLLVNKMNK   25 (95)
T ss_pred             cEEEEECCCchhHHHHHHHHHH
Confidence            3678999999999999999853

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length

Probab=83.26  E-value=6.7  Score=31.11  Aligned_cols=61  Identities=21%  Similarity=0.218  Sum_probs=38.7

Q ss_pred             EEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          219 RFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       219 ~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+.||..   +... ..|..-|++|++++++--.+++....+|+++-+|++..-.++....+..+
T Consensus        29 Vm~pGeY---~F~T~~~E~M~vvsG~l~V~lpg~~ew~~~~aGesF~VpanssF~v~v~~~~~Y~   90 (94)
T PF06865_consen   29 VMLPGEY---TFGTSAPERMEVVSGELEVKLPGEDEWQTYSAGESFEVPANSSFDVKVKEPTAYL   90 (94)
T ss_dssp             EE-SECE---EEEESS-EEEEEEESEEEEEETT-SS-EEEETT-EEEE-TTEEEEEEESS-EEEE
T ss_pred             EEeeeEE---EEcCCCCEEEEEEEeEEEEEcCCCcccEEeCCCCeEEECCCCeEEEEECcceeeE
Confidence            4556552   2222 35778899999999522223467899999999999999888887766543

The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.

>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins

Probab=83.08  E-value=1  Score=34.69  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=18.1

Q ss_pred             HHHHHHHHhCCCcEEEecCCC
Q 021698           28 DALVSHLRSLNIDVEDLGTSD   48 (309)
Q Consensus        28 ~~l~~~l~~~g~~v~d~g~~~   48 (309)
                      ..++++|+++||+|++++..+
T Consensus        11 s~v~~~L~~~GyeVv~l~~~~   31 (80)
T PF03698_consen   11 SNVKEALREKGYEVVDLENEQ   31 (80)
T ss_pred             hHHHHHHHHCCCEEEecCCcc
Confidence            468999999999999998643

>PRK10579 hypothetical protein; Provisional

Probab=83.02  E-value=7.8  Score=30.72  Aligned_cols=49  Identities=14%  Similarity=0.219  Sum_probs=37.5

Q ss_pred             cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          234 GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       234 ~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .|..-|++|++++.+--.+++....+|+.+.+|++..-.++....+..+
T Consensus        42 ~E~MeivsG~l~V~Lpg~~ew~~~~aG~sF~VpanssF~l~v~~~t~Y~   90 (94)
T PRK10579         42 PEEMTVISGALNVLLPGATDWQVYEAGEVFNVPGHSEFHLQVAEPTSYL   90 (94)
T ss_pred             cEEEEEEeeEEEEECCCCcccEEeCCCCEEEECCCCeEEEEECcceeeE
Confidence            4777899999999422223557999999999999998888777655443

>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed

Probab=82.24  E-value=0.64  Score=37.42  Aligned_cols=20  Identities=25%  Similarity=0.699  Sum_probs=17.9

Q ss_pred             eEEEEecCchhhhhhhcCCC
Q 021698           71 RGLVACGTGVGVAIFANKNP   90 (309)
Q Consensus        71 ~gi~~cgtG~G~~i~aNK~~   90 (309)
                      +-+++||+|++.||++||.+
T Consensus         3 kILlvCg~G~STSlla~k~k   22 (104)
T PRK09590          3 KALIICAAGMSSSMMAKKTT   22 (104)
T ss_pred             EEEEECCCchHHHHHHHHHH
Confidence            46899999999999999874

>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional

Probab=82.13  E-value=6.9  Score=36.97  Aligned_cols=53  Identities=19%  Similarity=0.291  Sum_probs=39.7

Q ss_pred             ccEE-EEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc----CCeEEEEEEcC
Q 021698          233 FGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY----EETEFFIKWDG  287 (309)
Q Consensus       233 ~~e~-vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~----~d~~~~i~~~g  287 (309)
                      ..|. ++.|.|++++  .++++++.+.+.|++|+|.|..-.....    ++.++.+....
T Consensus        73 rrE~giV~lgG~~~V--~vdG~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAP  130 (276)
T PRK00924         73 RRELGIINIGGAGTV--TVDGETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAP  130 (276)
T ss_pred             CcEEEEEEccceEEE--EECCEEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccc
Confidence            3454 5679999999  6899999999999999999988555432    24566655543

>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization

Probab=81.68  E-value=0.6  Score=34.96  Aligned_cols=20  Identities=30%  Similarity=0.740  Sum_probs=16.9

Q ss_pred             eEEEEecCchhhh-hhhcCCC
Q 021698           71 RGLVACGTGVGVA-IFANKNP   90 (309)
Q Consensus        71 ~gi~~cgtG~G~~-i~aNK~~   90 (309)
                      +.+++|++|.|.+ |.+||+.
T Consensus         2 kilivC~~G~~~s~~l~~~l~   22 (85)
T cd05568           2 KALVVCPSGIGTSRLLKSKLK   22 (85)
T ss_pred             eEEEECCCCHHHHHHHHHHHH
Confidence            5789999999999 8887754

The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial

>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=81.64  E-value=6.4  Score=38.43  Aligned_cols=46  Identities=17%  Similarity=0.207  Sum_probs=38.8

Q ss_pred             CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          232 TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       232 ~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      ..++++|+-+|++++  .++=....++|||+..||.|+.-++.-....
T Consensus       145 Dge~Livpq~G~l~l--~te~G~l~v~pgeiavIPRG~~frve~~~~~  190 (427)
T COG3508         145 DGELLIVPQQGELRL--KTELGVLEVEPGEIAVIPRGTTFRVELKDGE  190 (427)
T ss_pred             CCCEEEEeecceEEE--EEeeceEEecCCcEEEeeCCceEEEEecCCc
Confidence            356677899999999  6777889999999999999999998776544

>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []

Probab=81.55  E-value=4.5  Score=33.53  Aligned_cols=96  Identities=22%  Similarity=0.330  Sum_probs=56.0

Q ss_pred             CCcEEEEEeC--cccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcC
Q 021698           11 HPLKIIAGAD--SFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANK   88 (309)
Q Consensus        11 ~~mkI~ig~D--~~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK   88 (309)
                      +.-+|+||.|  +.+-.+++.+.+-|...|.+|.|+|.-.-|.+...+.+.        .++-||.|-         |..
T Consensus        39 ~~~~VvVg~D~R~~s~~~~~~~~~~l~~~G~~V~~~g~~~tP~~~~~~~~~--------~~~ggi~iT---------aSh  101 (137)
T PF02878_consen   39 NGSRVVVGRDTRPSSPMLAKALAAGLRANGVDVIDIGLVPTPALSFAIRQL--------NADGGIMIT---------ASH  101 (137)
T ss_dssp             TSSEEEEEE-SSTTHHHHHHHHHHHHHHTTEEEEEEEEB-HHHHHHHHHHH--------TESEEEEE-----------TT
T ss_pred             CCCeEEEEEcccCCHHHHHHHHHHHHhhcccccccccccCcHHhhhhcccc--------ccceeeEEE---------ecC
Confidence            3458999999  777899999999999999999999954444444444332        234455543         322


Q ss_pred             CCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCC
Q 021698           89 NPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPF  139 (309)
Q Consensus        89 ~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f  139 (309)
                      .|+=+                |+--+..=.+..+.++.-++|.+.+...+|
T Consensus       102 np~~~----------------ngik~~~~~G~~~~~~~~~~I~~~~~~~~~  136 (137)
T PF02878_consen  102 NPPGY----------------NGIKFFDANGGPISPEEERKIEQIIEREEF  136 (137)
T ss_dssp             S-TTE----------------EEEEEEETTSSB--HHHHHHHHHHHHHT-E
T ss_pred             CCCCc----------------ceEEEEeCCCCcCCHHHHHHHHHHHHhhhc
Confidence            22222                221122222446777777777777765544

PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....

>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional

Probab=81.48  E-value=0.91  Score=35.67  Aligned_cols=48  Identities=13%  Similarity=0.245  Sum_probs=28.6

Q ss_pred             eEEEEecCchhhhhh-hcCCCc------eEEEEeC-CHHHHHHHHhhcCcceeeeccc
Q 021698           71 RGLVACGTGVGVAIF-ANKNPG------VFATTCL-TPADALNTRSINNCNVLAVSGM  120 (309)
Q Consensus        71 ~gi~~cgtG~G~~i~-aNK~~g------iraa~~~-~~~~A~~~r~hNnaNvl~~g~~  120 (309)
                      +-+++||+|+|.|+. ++|++-      |-+-+.+ +..+.  ....+|..++..+..
T Consensus         4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~--~~~~~~~D~iv~t~~   59 (94)
T PRK10310          4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI--ETYMDGVHLICTTAR   59 (94)
T ss_pred             eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHH--hhhcCCCCEEEECCc
Confidence            578999999999988 577554      3333332 22222  222356667766554

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=81.48  E-value=15  Score=30.66  Aligned_cols=60  Identities=12%  Similarity=0.100  Sum_probs=37.8

Q ss_pred             CcEEEEEeCc-ccHHH-HHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCc
Q 021698           12 PLKIIAGADS-FGAEL-KDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTG   79 (309)
Q Consensus        12 ~mkI~ig~D~-~g~~l-k~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG   79 (309)
                      +.||++|.=- -+.+. |+.+...|+..||+|+|+|.+.-++   .+++++.+     +....|.+|++=
T Consensus         2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e---~~v~aa~e-----~~adii~iSsl~   63 (132)
T TIGR00640         2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPE---EIARQAVE-----ADVHVVGVSSLA   63 (132)
T ss_pred             CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHH---HHHHHHHH-----cCCCEEEEcCch
Confidence            3466665311 12333 7888899999999999999964443   34444443     234677888764

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)

Probab=81.25  E-value=0.59  Score=35.73  Aligned_cols=20  Identities=50%  Similarity=0.785  Sum_probs=16.6

Q ss_pred             eEEEEecCchhhh-hhhcCCC
Q 021698           71 RGLVACGTGVGVA-IFANKNP   90 (309)
Q Consensus        71 ~gi~~cgtG~G~~-i~aNK~~   90 (309)
                      +.+++|++|+|.| |.+.|++
T Consensus         2 ~ilivC~~G~~tS~~l~~~i~   22 (89)
T cd05566           2 KILVACGTGVATSTVVASKVK   22 (89)
T ss_pred             EEEEECCCCccHHHHHHHHHH
Confidence            5789999999999 7776654

In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and

>TIGR00218 manA mannose-6-phosphate isomerase, class I

Probab=80.71  E-value=0.88  Score=43.18  Aligned_cols=21  Identities=33%  Similarity=0.805  Sum_probs=18.5

Q ss_pred             eEEEecCCcEEEECCCCcEEE
Q 021698          253 ERFDLTVGDYLFTPAGDVHRV  273 (309)
Q Consensus       253 ~~~~L~pGd~i~iP~g~~H~~  273 (309)
                      ....++|||++|||+|++|..
T Consensus       151 n~v~v~~Gd~i~ipaGt~HA~  171 (302)
T TIGR00218       151 NRIKLKPGDFFYVPSGTPHAY  171 (302)
T ss_pred             cccccCCCCEEEeCCCCcccc
Confidence            347899999999999999983

The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.

>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators

Probab=80.66  E-value=17  Score=30.90  Aligned_cols=42  Identities=21%  Similarity=0.247  Sum_probs=35.9

Q ss_pred             CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEE
Q 021698          232 TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY  275 (309)
Q Consensus       232 ~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n  275 (309)
                      -.--+.+|++|+-++  .++++.+...+|+++..+.+.|=....
T Consensus        22 y~p~i~~vlQG~K~~--~~g~~~~~Y~~g~~lv~~~~lPv~~~v   63 (155)
T PF06719_consen   22 YEPSICIVLQGSKRV--HLGDQVFEYDAGQYLVSSVDLPVESEV   63 (155)
T ss_pred             cCCeEEEEEeeeEEE--EECCceEEecCCcEEEecCCCcEEEEE
Confidence            334567899999999  789999999999999999999976554

In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.

>PRK03094 hypothetical protein; Provisional

Probab=80.64  E-value=1.2  Score=34.19  Aligned_cols=19  Identities=16%  Similarity=0.239  Sum_probs=16.6

Q ss_pred             HHHHHHHHhCCCcEEEecC
Q 021698           28 DALVSHLRSLNIDVEDLGT   46 (309)
Q Consensus        28 ~~l~~~l~~~g~~v~d~g~   46 (309)
                      ..|+++|+++||+|+|+-.
T Consensus        11 s~i~~~L~~~GYeVv~l~~   29 (80)
T PRK03094         11 TDVQQALKQKGYEVVQLRS   29 (80)
T ss_pred             HHHHHHHHHCCCEEEecCc
Confidence            4589999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	309
3he8_A	149	Structural Study Of Clostridium Thermocellum Ribose		1e-15
3ph4_A	169	Clostridium Thermocellum Ribose-5-Phosphate Isomera		1e-15
1nn4_A	162	Structural Genomics, RpibALSB Length = 162		5e-13
2vvr_A	149	Crystal Structure Of The H99n Mutant Of Ribose-5-Ph		8e-13
3s5p_A	166	Crystal Structure Of Ribose-5-Phosphate Isomerase B		7e-12
1o1x_A	155	Crystal Structure Of A Ribose 5-phosphate Isomerase		1e-10
3k7o_A	179	Structure Of Type B Ribose 5-phosphate Isomerase Fr		2e-09
4em8_A	148	The Structure Of Ribose 5-Phosphate Isomerase B Fro		4e-09
3k7p_A	179	Structure Of Mutant Of Ribose 5-phosphate Isomerase		2e-08
3m1p_A	153	Structure Of Ribose 5-Phosphate Isomerase Type B Fr		2e-08
2vvo_A	162	Crystal Structure Of Mycobacterium Tuberculosis Rib		9e-07
1usl_A	170	Structure Of Mycobacterium Tuberculosis Ribose-5-ph		9e-07
2bes_A	172	Structure Of Mycobacterium Tuberculosis Ribose-5-Ph		1e-06
3sdw_A	184	Crystal Structure Of A Ribose-5-Phosphate Isomerase		2e-05
3qd5_A	167	Crystal Structure Of A Putative Ribose-5-Phosphate		3e-04

>pdb|3HE8|A Chain A, Structural Study Of Clostridium Thermocellum Ribose-5-Phosphate Isomerase B Length = 149

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVSSSDSSETTTR 71
           +KI  G+D  G  LK  +   L+    +V D GT    S+   + G +V+ +  S    R
Sbjct: 1   MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR 60
Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G+V CGTG+G++I ANK PG+ A  C     A  +R  N+ N+LA+       + A++I+
Sbjct: 61  GIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIV 120
Query: 132 DTWLKTPFKAPCPAS 146
           DTWLK  F+    A+
Sbjct: 121 DTWLKAEFQGGRHAT 135

>pdb|3PH4|A Chain A, Clostridium Thermocellum Ribose-5-Phosphate Isomerase B With D-Allose Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVSSSDSSETTTR 71
           +KI  G+D  G  LK  +   L+    +V D GT    S+   + G +V+ +  S    R
Sbjct: 21  MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDR 80
Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G+V CGTG+G++I ANK PG+ A  C     A  +R  N+ N+LA+       + A++I+
Sbjct: 81  GIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIV 140
Query: 132 DTWLKTPFKAPCPAS 146
           DTWLK  F+    A+
Sbjct: 141 DTWLKAEFQGGRHAT 155

>pdb|1NN4|A Chain A, Structural Genomics, RpibALSB Length = 162

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSET 68
           KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V+  +    
Sbjct: 16  KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGE---- 71
Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct: 72  VDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAK 131
Query: 129 EILDTWLKTPFKA 141
            I+D WL   ++ 
Sbjct: 132 MIVDAWLGAQYEG 144

>pdb|2VVR|A Chain A, Crystal Structure Of The H99n Mutant Of Ribose-5-Phosphate Isomerase B From E. Coli Soaked With Ribose 5-Phosphate Length = 149

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSET 68
           KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V+  +    
Sbjct: 3   KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGE---- 58
Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct: 59  VDGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAK 118
Query: 129 EILDTWLKTPFKA 141
            I+D WL   ++ 
Sbjct: 119 MIVDAWLGAQYEG 131

>pdb|3S5P|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase B Rpib From Giardia Lamblia Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 5   ADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIG----AEVGRRV 60
           A    P  +K+   +D  G +L+  L     +   +V DLGT    S+     A++G   
Sbjct: 14  AQTQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEA 73
Query: 61  SSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM 120
            +S  ++     ++ CGTG+G++I ANK  G+    C T  DA   R  NN N LA+ G 
Sbjct: 74  VTSGRADCC---ILVCGTGIGISIAANKMKGIRCALCSTEYDAEMARKHNNANALALGGR 130
Query: 121 STSKESAVEILDTWLKTPFK 140
           +T  E A  IL  +L T F+
Sbjct: 131 TTGPEVAASILSRFLSTNFE 150

>pdb|1O1X|A Chain A, Crystal Structure Of A Ribose 5-phosphate Isomerase Rpib (tm1080) From Thermotoga Maritima At 1.90 A Resolution Length = 155

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGA-EVGRRVSSSDSSETTTR 71
           +KI   +D    ELK+ + ++L    I+VED GT    S+   +  ++V  S  S     
Sbjct: 13  VKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEADF 72
Query: 72  GLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEIL 131
           G++  GTG+G +I AN+  G+ A  CL P  A   RS NN N+L + G     E A  I+
Sbjct: 73  GILLXGTGLGXSIAANRYRGIRAALCLFPDXARLARSHNNANILVLPGRLIGAELAFWIV 132
Query: 132 DTWLKTPFKAPCPASGLKPWDE 153
           DT+L TPF        ++  DE
Sbjct: 133 DTFLSTPFDGGRHERRIRKIDE 154

>pdb|3K7O|A Chain A, Structure Of Type B Ribose 5-phosphate Isomerase From Trypanosoma Cruzi Length = 179

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%)
Query: 59  RVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
           RV+   + +    G++ACG+G+G++I ANK PGV A  C     A  +R  N+ N++ V 
Sbjct: 72  RVAEMVARKEVEFGVLACGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVG 131
Query: 119 GMSTSKESAVEILDTWLKTPF 139
             +T  E   EI+ T+L+TPF
Sbjct: 132 ERTTGVEVIREIIITFLQTPF 152

>pdb|4EM8|A Chain A, The Structure Of Ribose 5-Phosphate Isomerase B From Anaplasma Phagocytophilum Length = 148

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLG------TSDYYSIGAEVGRRVSSSDSSE 67
           ++   +D  G EL+  L ++LR L  +V D G      + DY     +V R VS      
Sbjct: 9   RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSD----- 63
Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
            T+ G++ CGTG+G++I AN++  + A  C +   A  +R  N+ NVL         ++A
Sbjct: 64  -TSFGVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTA 122
Query: 128 VEILDTWLKTPF 139
             +L T++ T F
Sbjct: 123 QSVLYTFMTTAF 134

>pdb|3K7P|A Chain A, Structure Of Mutant Of Ribose 5-phosphate Isomerase Type B From Trypanosoma Cruzi. Length = 179

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 59  RVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
           RV+   + +    G++A G+G+G++I ANK PGV A  C     A  +R  N+ N++ V 
Sbjct: 72  RVAEMVARKEVEFGVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVG 131
Query: 119 GMSTSKESAVEILDTWLKTPF 139
             +T  E   EI+ T+L+TPF
Sbjct: 132 ERTTGVEVIREIIITFLQTPF 152

>pdb|3M1P|A Chain A, Structure Of Ribose 5-Phosphate Isomerase Type B From Trypanosoma Cruzi, Soaked With Allose-6-Phosphate Length = 153

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)
Query: 59  RVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
           RV+   + +    G++A G+G+G++I ANK PGV A  C     A  +R  N+ N++ V 
Sbjct: 52  RVAEMVARKEVEFGVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVG 111
Query: 119 GMSTSKESAVEILDTWLKTPF 139
             +T  E   EI+ T+L+TPF
Sbjct: 112 ERTTGVEVIREIIITFLQTPF 132

>pdb|2VVO|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Ribose-5- Phosphate Isomerase B In Complex With Alpha D-Allose 6- Phosphate Length = 162

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY--------YSIGAEVGRRVSSSD 64
           +++  GAD  G ELK  ++ HL+    +  D G   Y        + I A      ++  
Sbjct: 4   MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAA------ATRT 57
Query: 65  SSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
            ++  + G+V  G+G G  I ANK PG       +   A   R  NN  ++ + G   + 
Sbjct: 58  VADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTV 117
Query: 125 ESAVEILDTWLKTPF 139
             A+ I+D ++ TP+
Sbjct: 118 AEALAIVDAFVTTPW 132

>pdb|1USL|A Chain A, Structure Of Mycobacterium Tuberculosis Ribose-5-phosphate Isomerase, Rpib, Rv2465c, Complexed With Phosphate. Length = 170

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY--------YSIGAEVGRRVSSSD 64
           +++  GAD  G ELK  ++ HL+    +  D G   Y        + I A      ++  
Sbjct: 12  MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAA------ATRT 65
Query: 65  SSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
            ++  + G+V  G+G G  I ANK PG       +   A   R  NN  ++ + G   + 
Sbjct: 66  VADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTV 125
Query: 125 ESAVEILDTWLKTPF 139
             A+ I+D ++ TP+
Sbjct: 126 AEALAIVDAFVTTPW 140

>pdb|2BES|A Chain A, Structure Of Mycobacterium Tuberculosis Ribose-5-Phosphate Isomerase, Rpib, Rv2465c, In Complex With 4-Phospho-D- Erythronohydroxamic Acid. Length = 172

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDY--------YSIGAEVGRRVSSSD 64
           +++  GAD  G ELK  ++ HL+    +  D G   Y        + I A      ++  
Sbjct: 14  MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAA------ATRT 67
Query: 65  SSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSK 124
            ++  + G+V  G+G G  I ANK PG       +   A   R  NN  ++ + G   + 
Sbjct: 68  VADPGSLGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTV 127
Query: 125 ESAVEILDTWLKTPF 139
             A+ I+D ++ TP+
Sbjct: 128 AEALAIVDAFVTTPW 142

>pdb|3SDW|A Chain A, Crystal Structure Of A Ribose-5-Phosphate Isomerase B Rpib From Coccidioides Immitis Bound To Phosphate Length = 184

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 56/136 (41%), Gaps = 12/136 (8%)
Query: 12  PLKIIAGADSFGAELKDALVSHL--RSLNIDVEDLG---TSD---YYSIGAEVGRRVSSS 63
           PL++    D  G   K+AL +HL    L   + D+G   T+D   Y  +  +  + +   
Sbjct: 29  PLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDG 88
Query: 64  DSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTS 123
                  R L+ CGTG+GVAI ANK PG+ A T             N+  VL        
Sbjct: 89  K----VDRALMICGTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIG 144
Query: 124 KESAVEILDTWLKTPF 139
            E A  +   WL   F
Sbjct: 145 IELAKRLAGEWLTYRF 160

>pdb|3QD5|A Chain A, Crystal Structure Of A Putative Ribose-5-Phosphate Isomerase From Coccidioides Immitis Solved By Combined Iodide Ion Sad And Mr Length = 167

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 12  PLKIIAGADSFGAELKDALVSHL--RSLNIDVEDLGTSD------YYSIGAEVGRRVSSS 63
           PL++    D  G   K+AL +HL    L   + D+G +       Y  +  +  + +   
Sbjct: 12  PLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKDG 71
Query: 64  DSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTS 123
                  R L+  GTG+GVAI ANK PG+ A T             N+  VL        
Sbjct: 72  K----VDRALMIXGTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIG 127
Query: 124 KESAVEILDTWLKTPF 139
            E A  +   WL   F
Sbjct: 128 IELAKRLAGEWLTYRF 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
3s5p_A	166	Ribose 5-phosphate isomerase; structural genomics,	4e-34
1o1x_A	155	Ribose-5-phosphate isomerase RPIB; structural geno	5e-34
2vvr_A	149	Ribose-5-phosphate isomerase B; RPIB, carbohydrate	9e-34
3he8_A	149	Ribose-5-phosphate isomerase; CTRPI B, isomerizati	9e-34
3ph3_A	169	Ribose-5-phosphate isomerase; alpha-beta-alpha san	1e-33
4em8_A	148	Ribose 5-phosphate isomerase B; ssgcid, seattle st	2e-32
2vvp_A	162	Ribose-5-phosphate isomerase B; RPIB, RV2465C, RAR	3e-32
3sgw_A	184	Ribose 5-phosphate isomerase; structural genomics,	3e-32
3k7p_A	179	Ribose 5-phosphate isomerase; pentose phosphate pa	1e-30
3c5y_A	231	Ribose/galactose isomerase; structural genomics, j	1e-29
3ono_A	214	Ribose/galactose isomerase; structural genomics, P	2e-28
2ppw_A	216	Conserved domain protein; the putative RPIB, PSI-2	2e-27
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	5e-20
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	2e-19
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	2e-17
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	2e-10
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	7e-09
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	1e-08
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	1e-08
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	2e-08
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	7e-08
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	1e-06
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	1e-07
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	1e-07
1v70_A	105	Probable antibiotics synthesis protein; structural	4e-07
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	5e-07
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	5e-07
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	6e-07
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	1e-06
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	1e-06
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	1e-06
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	2e-06
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	3e-06
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	8e-05
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	3e-06
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	4e-06
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	6e-06
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	7e-06
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	5e-05
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	1e-05
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	1e-05
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	1e-05
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	1e-05
3h8u_A	125	Uncharacterized conserved protein with double-STR	2e-05
1sef_A	274	Conserved hypothetical protein; structural genomic	3e-05
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	7e-05
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	2e-04
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	2e-04
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	7e-04
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	2e-04
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	4e-04
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	6e-04
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	7e-04
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	8e-04

>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia} Length = 166

 Score =  121 bits (306), Expect = 4e-34
 Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 4   NADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGR 58
            A    P  +K+   +D  G +L+  L     +   +V DLGT      DY         
Sbjct: 13  EAQTQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCE 72

Query: 59  RVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
            V+S  +       ++ CGTG+G++I ANK  G+    C T  DA   R  NN N LA+ 
Sbjct: 73  AVTSGRAD----CCILVCGTGIGISIAANKMKGIRCALCSTEYDAEMARKHNNANALALG 128

Query: 119 GMSTSKESAVEILDTWLKTPF 139
           G +T  E A  IL  +L T F
Sbjct: 129 GRTTGPEVAASILSRFLSTNF 149

>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1 Length = 155

 Score =  121 bits (305), Expect = 5e-34
 Identities = 50/144 (34%), Positives = 75/144 (52%), Gaps = 9/144 (6%)

Query: 1   MAENADAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAE 55
           M  +      H +KI   +D    ELK+ + ++L    I+VED GT      DY     +
Sbjct: 1   MGSDKIHHHHHHVKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKK 60

Query: 56  VGRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVL 115
           V + + S+++      G++ CGTG+G++I AN+  G+ A  CL P  A   RS NN N+L
Sbjct: 61  VVQSILSNEAD----FGILLCGTGLGMSIAANRYRGIRAALCLFPDMARLARSHNNANIL 116

Query: 116 AVSGMSTSKESAVEILDTWLKTPF 139
            + G     E A  I+DT+L TPF
Sbjct: 117 VLPGRLIGAELAFWIVDTFLSTPF 140

>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A Length = 149

 Score =  119 bits (302), Expect = 9e-34
 Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSET 68
           KI  G D  G  LK  +V+HL    ++V D GT      DY    ++V   V+  +    
Sbjct: 3   KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEVD-- 60

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct: 61  --GGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAK 118

Query: 129 EILDTWLKTPF 139
            I+D WL   +
Sbjct: 119 MIVDAWLGAQY 129

>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A* Length = 149

 Score =  119 bits (302), Expect = 9e-34
 Identities = 48/131 (36%), Positives = 67/131 (51%), Gaps = 9/131 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSET 68
           KI  G+D  G  LK  +   L+    +V D GT      DY   G +V   V S +    
Sbjct: 2   KIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECD-- 59

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
             RG+V CGTG+G++I ANK PG+ A  C     A  +R  N+ N+LA+       + A+
Sbjct: 60  --RGIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLAL 117

Query: 129 EILDTWLKTPF 139
           +I+DTWLK  F
Sbjct: 118 DIVDTWLKAEF 128

>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} PDB: 3ph4_A* Length = 169

 Score =  120 bits (303), Expect = 1e-33
 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 9/133 (6%)

Query: 12  PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSS 66
            +KI  G+D  G  LK  +   L+    +V D GT      DY   G +V   V S +  
Sbjct: 20  HMKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECD 79

Query: 67  ETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
               RG+V CGTG+G++I ANK PG+ A  C     A  +R  N+ N+LA+       + 
Sbjct: 80  ----RGIVICGTGLGISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDL 135

Query: 127 AVEILDTWLKTPF 139
           A++I+DTWLK  F
Sbjct: 136 ALDIVDTWLKAEF 148

>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum} Length = 148

 Score =  116 bits (293), Expect = 2e-32
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 12/132 (9%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSE 67
           ++   +D  G EL+  L ++LR L  +V D G        DY     +V R VS +    
Sbjct: 9   RVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDTS--- 65

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G++ CGTG+G++I AN++  + A  C +   A  +R  N+ NVL         ++A
Sbjct: 66  ---FGVLICGTGIGMSIAANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTA 122

Query: 128 VEILDTWLKTPF 139
             +L T++ T F
Sbjct: 123 QSVLYTFMTTAF 134

>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A Length = 162

 Score =  116 bits (293), Expect = 3e-32
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSE 67
           ++  GAD  G ELK  ++ HL+    +  D G        DY +       R  +   S 
Sbjct: 5   RVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGS- 63

Query: 68  TTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESA 127
               G+V  G+G G  I ANK PG       +   A   R  NN  ++ + G   +   A
Sbjct: 64  ---LGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEA 120

Query: 128 VEILDTWLKTPF 139
           + I+D ++ TP+
Sbjct: 121 LAIVDAFVTTPW 132

>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A* Length = 184

 Score =  116 bits (294), Expect = 3e-32
 Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 7   AAAPHPLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTS------DYYSIGAEVGR 58
           A    PL++    D  G   K+AL +HL    L   + D+G +       Y  +  +  +
Sbjct: 24  ATPLPPLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQ 83

Query: 59  RVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
            +          R L+ CGTG+GVAI ANK PG+ A T             N+  VL   
Sbjct: 84  LIKDGKVD----RALMICGTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCFG 139

Query: 119 GMSTSKESAVEILDTWLKTPF 139
                 E A  +   WL   F
Sbjct: 140 QRVIGIELAKRLAGEWLTYRF 160

>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A Length = 179

 Score =  113 bits (284), Expect = 1e-30
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 11/133 (8%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDL--GTS-----DYYSIGAEVGRRVSSSDSS 66
           ++  G D     + + L+ +++    +   +  G       DY    + V   V+  +  
Sbjct: 24  RVAIGTDHPAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVARKEVE 83

Query: 67  ETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKES 126
                G++A G+G+G++I ANK PGV A  C     A  +R  N+ N++ V   +T  E 
Sbjct: 84  ----FGVLAAGSGIGMSIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEV 139

Query: 127 AVEILDTWLKTPF 139
             EI+ T+L+TPF
Sbjct: 140 IREIIITFLQTPF 152

>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans} Length = 231

 Score =  111 bits (279), Expect = 1e-29
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 16/144 (11%)

Query: 11  HPLKIIAGADSFGAE----LKDALVSHLRSLNIDVEDLGTS--------DYYSIGAEVGR 58
             +KI    ++  A     + +AL +    L   V + G           Y   G   G 
Sbjct: 18  QGMKIALIIENSQAAKNAVVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGI 77

Query: 59  RVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVS 118
            ++S  +       +  CGTG+G  + AN  PGVF    + P DA     IN+ N +++ 
Sbjct: 78  LLNSGAAD----FVVTGCGTGMGSMLAANAMPGVFCGLVIDPTDAFLFGQINDGNAISMP 133

Query: 119 GMSTSKESAVEILDTWLKTPFKAP 142
                  +A   L    +  F   
Sbjct: 134 YSKGFGWAAELNLQDVYRKLFDGE 157

>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus} Length = 214

 Score =  108 bits (270), Expect = 2e-28
 Identities = 30/142 (21%), Positives = 51/142 (35%), Gaps = 15/142 (10%)

Query: 12  PLKIIAGADSFGAELKDALVSHLR----SLNIDVEDLGTS-------DYYSIGAEVGRRV 60
            +KI    ++  A     +   L      L  DV ++G +        Y  +G      +
Sbjct: 3   AMKIALMMENSQAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILL 62

Query: 61  SSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM 120
           +S          +  CGTG G  +  N +PGV    CL P+DA     INN N ++++  
Sbjct: 63  NSKAVD----FVVTGCGTGQGALMSCNLHPGVVCGYCLEPSDAFLFNQINNGNAISLAFA 118

Query: 121 STSKESAVEILDTWLKTPFKAP 142
                +    +    +  F   
Sbjct: 119 KGFGWAGELNVRYIFEKAFTGK 140

>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae} Length = 216

 Score =  105 bits (263), Expect = 2e-27
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 19/144 (13%)

Query: 11  HPLKIIAGADSFGAELKDALVSHLR----SLNIDVEDLGTS--------DYYSIGAEVGR 58
           + +KI    ++  A     +   L+         + + G           Y   G     
Sbjct: 2   NAMKIALINENSQASKNHIIYDSLKEATDKKGYQLFNYGMRGEEGESQLTYVQNGLMAAI 61

Query: 59  RVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAV- 117
            +++          +  CGTGVG  +  N  PGV     + P DA     IN  N L++ 
Sbjct: 62  LLNTKAVD----FVVTGCGTGVGAMLALNSFPGVVCGLAVDPTDAYLYSQINGGNALSIP 117

Query: 118 --SGMSTSKESAVEILDTWLKTPF 139
              G     E  ++++   L    
Sbjct: 118 YAKGFGWGAELTLKLMFERLFAEE 141

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21 Length = 145

 Score = 83.9 bits (207), Expect = 5e-20
 Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 6/108 (5%)

Query: 194 ELNPVEMIPGGSMKIIRESPTS----AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNL 249
                    G   K++  SP      AI    AGS   AH H    +  + +GK  V   
Sbjct: 21  PFPAAFSTGGIRWKLLHVSPEMGSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRGG 80

Query: 250 TKGERFDLTVGDYLFTPAGDVHRVKYYEE-TEFFIKWDGRWDMFFDED 296
                       Y +  A   H    +   +EF++ + G    F   D
Sbjct: 81  KAAGGDTAIAPGYGYESANARHDKTEFPVASEFYMSFLGPL-TFVKPD 127

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii} Length = 153

 Score = 82.4 bits (203), Expect = 2e-19
 Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 197 PVEMIPGGSMKIIRESPT----SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG 252
                 G + +++  SP     +AI    AGS   +H H    +  + +GK  V    + 
Sbjct: 26  EAFSDGGITWQLLHSSPETSSWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEVRGGEQE 85

Query: 253 ERFDLTVGDYLFTPAGDVH-RVKYYEETEFFIKWDGRWDMFFDEDLETA 300
                    Y F  +G +H +  +  E++F++ + G    F D++ +  
Sbjct: 86  GGSTAYAPSYGFESSGALHGKTFFPVESQFYMTFLGPL-NFIDDNGKVI 133

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha} Length = 165

 Score = 77.4 bits (190), Expect = 2e-17
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 12/105 (11%)

Query: 200 MIPGGSMKIIRESPTS----AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERF 255
              G  +  +   P +        F  G   P H HT    +  + G    W  T+    
Sbjct: 26  GHEGTDIFPLFMDPYNGLMVMRASFAPGLTLPLHFHTGTVHMYTISGC---WYYTEYPGQ 82

Query: 256 DLTVGDYLFTPAGDVHRVKYY----EETEFFIKWDGRWDMFFDED 296
             T G YL+ P G +H+         +TE      G  ++ F +D
Sbjct: 83  KQTAGCYLYEPGGSIHQFNTPRDNEGQTEVIFMLSGC-NVNFTQD 126

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus} Length = 126

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)

Query: 194 ELNPVEMIPGGSMKIIR-ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG 252
           E+     +PG +M+ I+ ++     VR +  +  PAH H      V+LEG   +      
Sbjct: 21  EVRSFSPLPGFAMQAIQGKNLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLELT--IGE 78

Query: 253 ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI 283
           E   L  G     P G  HR + +E+    +
Sbjct: 79  ETRVLRPGMAYTIPGGVRHRARTFEDGCLVL 109

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A Length = 145

 Score = 52.6 bits (126), Expect = 7e-09
 Identities = 14/59 (23%), Positives = 24/59 (40%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
                      P H H + H++ VLEG   +    +G   ++  G+ +F P G+ H   
Sbjct: 42  TEFEVSPNGSTPPHFHEWEHEIYVLEGSMGLVLPDQGRTEEVGPGEAIFIPRGEPHGFV 100

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1} Length = 167

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 10/103 (9%)

Query: 211 ESPTSAIVRF--KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAG 268
           E+P      F  + G       H   H ++V+ G   V  +       LT  D ++    
Sbjct: 52  EAPAFETRYFEVEPGGYTTLERHEHTHVVMVVRGHAEV--VLDDRVEPLTPLDCVYIAPH 109

Query: 269 DVHRVKYYEETE------FFIKWDGRWDMFFDEDLETAKKAVE 305
             H++      E             R      +DL        
Sbjct: 110 AWHQIHATGANEPLGFLCIVDSDRDRPQRPDADDLARMCADPA 152

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10 Length = 126

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 197 PVEMIPGGSMKII---RESPTSAIVRF--KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK 251
             + + G   +++   +++P   +  F  + G +   H H + H++ VL+GK +V    +
Sbjct: 27  STDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTVLK--E 84

Query: 252 GERFDLTVGDYLFTPAGDVHRVK 274
                +  G Y+F    ++H  +
Sbjct: 85  QGEETVEEGFYIFVEPNEIHGFR 107

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina} Length = 116

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 4/96 (4%)

Query: 189 LVKNRELNPVEMIPGGSMKIIRESP--TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSV 246
                +    ++  G   +++  +    +  + F  G+    H H       V+EG+  V
Sbjct: 8   FSFGEQTEIEDIGGGLKRQMLGFNHELMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHV 67

Query: 247 WNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282
                G    LT GD  F P    H           
Sbjct: 68  N--VDGVIKVLTAGDSFFVPPHVDHGAVCPTGGILI 101

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 52.1 bits (124), Expect = 7e-08
 Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 218 VRFKAGSVEPAHHHTFGHDLV-VLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY 276
           +    G   P H H   H+ + VL+GK  +     GER+ L  GDY   PAG  H  +  
Sbjct: 51  LSGGKGDAFPLHVHKDTHEGILVLDGKLELT--LDGERYLLISGDYANIPAGTPHSYRMQ 108

Query: 277 EETEFFIKW--DGRWDMFFDE 295
                 + +   G     +  
Sbjct: 109 SHRTRLVSYTMKGNVAHLYSV 129

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A* Length = 337

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 25/176 (14%), Positives = 54/176 (30%), Gaps = 12/176 (6%)

Query: 129 EILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSSGSTCSICC 188
            I + +                   + +        +      + KL   +     ++  
Sbjct: 129 VIGNPYDHAEHPPYASEEVSNERFAEAAAVATIVFLDEAKPACSAKLAELTELPDGAVPY 188

Query: 189 LVKNRELNPVEMIPGGSMKIIRESPTS------AIVRFKAGSVEPAHHHTFGHDLV-VLE 241
           ++++ E     +      +I+     +             G     H+H +  +    LE
Sbjct: 189 VLESGE-GDRLLTGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLE 247

Query: 242 GKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW--DGRWDMFFDE 295
           G+ ++W  T G+   L  GD+L  PA  VH  +        +     G ++ FF  
Sbjct: 248 GQMTMW--TDGQEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVLVPGLFEPFFRT 301

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum} Length = 166

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 4/69 (5%)

Query: 208 IIRESPTSAIVRF--KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFT 265
                 T  +  F    G       H   H +++L+G+     +       +   D +  
Sbjct: 46  FSGNGLTGELRYFEVGPGGHSTLERHQHAHGVMILKGRGHA--MVGRAVSAVAPYDLVTI 103

Query: 266 PAGDVHRVK 274
           P    H+ +
Sbjct: 104 PGWSWHQFR 112

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris} Length = 156

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 4/69 (5%)

Query: 208 IIRESPTSAIVRF--KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFT 265
               +       F    G       H   H +++  G             D+  GD +F 
Sbjct: 37  FADPNLACEWRYFEVDEGGYSTLERHAHVHAVMIHRGHGQCL--VGETISDVAQGDLVFI 94

Query: 266 PAGDVHRVK 274
           P    H+ +
Sbjct: 95  PPMTWHQFR 103

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A Length = 105

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLV-VLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
            +     G  +  H H     +   LEG+  V      E   L  G   F PAG  H V+
Sbjct: 31  DLYALLPGQAQKVHVHEGSDKVYYALEGEVVVR--VGEEEALLAPGMAAFAPAGAPHGVR 88

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9 Length = 115

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 5/80 (6%)

Query: 198 VEMIPGG--SMKIIRESPTSAI-VRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER 254
           V +      S  +++             G     H       + +L G   +      E 
Sbjct: 22  VMIEQDQMLSRTLVQRQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEIT--IDQET 79

Query: 255 FDLTVGDYLFTPAGDVHRVK 274
           + +  G  +  PAG  H + 
Sbjct: 80  YRVAEGQTIVMPAGIPHALY 99

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134} Length = 114

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 4/85 (4%)

Query: 199 EMIPGGSMKIIRESPTSAIVR--FKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFD 256
           + +       + +     ++R    AG    +H       +  LEG+  +     G +  
Sbjct: 20  KQLTQTPSAALFKEHRLEVMRMVLPAGKQVGSHSVAGPSTIQCLEGEVEIG--VDGAQRR 77

Query: 257 LTVGDYLFTPAGDVHRVKYYEETEF 281
           L  GD L+  AG  H V     T  
Sbjct: 78  LHQGDLLYLGAGAAHDVNAITNTSL 102

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp} Length = 110

 Score = 46.3 bits (110), Expect = 6e-07
 Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 206 MKIIRESPTSAIVRF--KAGSVEPAHHHTFGHD--LVVLEGKKSVWNLTKGERFDLTVGD 261
           M+++ ES    IV F  KAG   P H H    +  +VVLEG+                G 
Sbjct: 24  MELVHESENFKIVSFTFKAGQELPVHSHNIEGELNIVVLEGEGEFV-GDGDAVIPAPRGA 82

Query: 262 YLFTPAGDVHRVKYYEETEFFI 283
            L  P    H V+   + +  +
Sbjct: 83  VLVAPISTPHGVRAVTDMKVLV 104

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134} Length = 159

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 13/107 (12%)

Query: 198 VEMIPGGSMKIIRESP----TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGE 253
                   +K  +  P    T  +++  AG   P HHHT    +  ++G    W   + +
Sbjct: 23  APYSNDVMVKYFKIDPVRGETITLLKAPAGMEMPRHHHTGTVIVYTVQGS---WRYKEHD 79

Query: 254 RFDLTVGDYLFTPAGDVHRVKYY----EETEFFIKWDGRWDMFFDED 296
                 G  ++  A   H  +       +   F    G   ++ D+ 
Sbjct: 80  WV-AHAGSVVYETASTRHTPQSAYAEGPDIITFNIVAGEL-LYLDDK 124

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A Length = 266

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY 276
           + + K  S            + V+EG  ++ N        LTV  Y + P    H +   
Sbjct: 74  LAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNT-SSSSKKLTVDSYAYLPPNFHHSLDCV 132

Query: 277 EETEF-FIKW 285
           E       + 
Sbjct: 133 ESATLVVFER 142

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis} Length = 227

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 189 LVKNRELNPVEMI---PGG--SMKIIR-ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEG 242
           L      N  E++    G   S  ++   +    I+ F  G     H       + VL+G
Sbjct: 123 LESASAFNLAEVVEYQEGKIVSKNLVAKPNLVMTIMSFWKGESLDPHKAPGDALVTVLDG 182

Query: 243 KKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE 278
           +   +    G+ F +  G+    PA   H V+   E
Sbjct: 183 EGKYY--VDGKPFIVKKGESAVLPANIPHAVEAETE 216

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 191 KNRELNPVEMIPGGSMKIIRESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWN 248
           K      + +           + T  + +     G V P+H H       ++EGK   + 
Sbjct: 76  KEAVRRVLVLENPALRGQSSITATLYAGLQLIMPGEVAPSHRHNQSALRFIVEGK-GAFT 134

Query: 249 LTKGERFDLTVGDYLFTPAGDVHR 272
              GER  +  GD++ TP    H 
Sbjct: 135 AVDGERTPMNEGDFILTPQWRWHD 158

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23 Length = 354

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 10/56 (17%), Positives = 14/56 (25%), Gaps = 2/56 (3%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR 272
           +     G        T      V+EG  S   +   E F  +  D    P      
Sbjct: 272 LQLLPKGFASRVARTTDSTIYHVVEG--SGQVIIGNETFSFSAKDIFVVPTWHGVS 325

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 46/328 (14%), Positives = 98/328 (29%), Gaps = 73/328 (22%)

Query: 1   MAENADAAAPHPLKIIAGADSFGAELKDALVS--HLRSLNI--DVEDLGTSDYYSIGAEV 56
           +  N  + + H   I     S  AEL+  L S  +   L +  +V++    + +++  ++
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 57  GRRVSSSDSSETTTRGLVACGTGVGVAIFANKNPGVFATTCLTP-------ADALNT--- 106
              +++     T               I  + +         TP          L+    
Sbjct: 269 --LLTTRFKQVTD-----FLSAATTTHISLDHHSMTL-----TPDEVKSLLLKYLDCRPQ 316

Query: 107 ---RSINNCNVLAVSGMSTSKESAVEILDTW-------LKTPFKAPCPASGLKPWDEKLS 156
              R +   N   +S ++ S    +   D W       L T  ++      L+P + +  
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNV-LEPAEYR-K 373

Query: 157 CF-----FDKSMTEMP------LIGKNDKLDSDSSGSTCSICCLVKNRELNPVEMIPGGS 205
            F     F  S   +P      +     K D     +      LV+ +       IP   
Sbjct: 374 MFDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 206 MKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFT 265
           +++  +              E A H +      +++           +     +  Y ++
Sbjct: 433 LELKVKLEN-----------EYALHRS------IVDHYNIPKTFDSDDLIPPYLDQYFYS 475

Query: 266 PAGDVH--RVKYYEETEFFIKW--DGRW 289
             G  H   +++ E    F     D R+
Sbjct: 476 HIGH-HLKNIEHPERMTLFRMVFLDFRF 502

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 215 SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           +AI         P H H+      V+EG+  VW +  G+   ++ GD L TP    H   
Sbjct: 105 AAIQYLGPRETAPEHRHSQNAFRFVVEGE-GVWTVVNGDPVRMSRGDLLLTPGWCFHGHM 163

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* Length = 368

 Score = 42.9 bits (100), Expect = 8e-05
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY 275
              R +AG+     +        V EG  +V     GE   L  GD    P+     ++ 
Sbjct: 282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAVV--MNGETTKLEKGDMFVVPSWVPWSLQA 339

Query: 276 YEETEFF 282
             + + F
Sbjct: 340 ETQFDLF 346

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense} Length = 114

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 198 VEMIPGG--SMKIIR-ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER 254
           +E       SM + + +    ++  F  G       +      ++L+G+  +      ++
Sbjct: 20  IEARENQVLSMALAQSDRVQISLFSFADGESVSEEEYFGDTLYLILQGEAVIT--FDDQK 77

Query: 255 FDLTVGDYLFTPAGDVHRVK 274
            DL   D L  PA  +H + 
Sbjct: 78  IDLVPEDVLMVPAHKIHAIA 97

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A* Length = 163

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 12/65 (18%), Positives = 20/65 (30%), Gaps = 7/65 (10%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVW-------NLTKGERFDLTVGDYLFTPAGD 269
           +     G   P H H+      VL+GK ++           + +            P  D
Sbjct: 45  LQTISPGQRTPIHRHSCEEVFTVLKGKGTLLMGSSSLKYPGQPQEIPFFQNTTFSIPVND 104

Query: 270 VHRVK 274
            H+V 
Sbjct: 105 PHQVW 109

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei} Length = 223

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 11/77 (14%)

Query: 201 IPGGSMKIIR-----ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERF 255
           + G   +++       +  ++IVR+  GS   AH H  G + +VL+G   V+    G   
Sbjct: 26  MKGVERRMLDRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFIVLDG---VFQDEHG--- 79

Query: 256 DLTVGDYLFTPAGDVHR 272
           D   G Y+  P    H 
Sbjct: 80  DYPAGTYVRNPPTTSHV 96

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Length = 394

 Score = 46.0 bits (108), Expect = 7e-06
 Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 8/104 (7%)

Query: 198 VEMIPGGSMKIIRESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERF 255
           V +       +        S I   KAG    AH H       ++EG    + +  G + 
Sbjct: 106 VYLRNPQRKDVSAACGWLFSGIQTMKAGERAGAHRHAASALRFIMEGS-GAYTIVDGHKV 164

Query: 256 DLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDEDLET 299
           +L   D++ TP G  H     E        +  W    D  L  
Sbjct: 165 ELGANDFVLTPNGTWHEHGILESGT-----ECIWQDGLDIPLTN 203

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23 Length = 394

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 212 SPT--SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGD 269
             T  +++   + G    AH HT      V +G+        G+RFD +  D    PA  
Sbjct: 291 MLTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSI--VGGKRFDWSEHDIFCVPAWT 348

Query: 270 VHR 272
            H 
Sbjct: 349 WHE 351

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Length = 133

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDL-VVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           A ++   GS    H H    ++  +L G+        G+   +  GD  FT +G+ H ++
Sbjct: 60  ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVFH--DNGKDVPIKAGDVCFTDSGESHSIE 117

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11 Length = 278

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 222 AGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
            GS +P         L V+EG+ S+    +G+   +  G Y F P G  ++V+
Sbjct: 79  GGSDKPEQDPNAEAVLFVVEGELSLTL--QGQVHAMQPGGYAFIPPGADYKVR 129

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis} Length = 125

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 216 AIVRFKAG-SVEPAHHHTFGHDL-VVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRV 273
           +I    AG  V   H H    ++  +L GK  +     GE+ +L  GD+L        ++
Sbjct: 29  SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFIT--IDGEKIELQAGDWLRIAPDGKRQI 86

Query: 274 K 274
            
Sbjct: 87  S 87

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11 Length = 261

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 221 KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
             G+ +          L V+ G  +     +G+ F L+ G YL+ P G +    
Sbjct: 69  NGGNQQGFGGEGIETFLYVISGNITAKA--EGKTFALSEGGYLYCPPGSLMTFV 120

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp} Length = 125

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 4/71 (5%)

Query: 207 KIIRESPTSAIVRF--KAGSVEPAHHHTFGHDL-VVLEGKKSVWNLTKGERFDLTVGDYL 263
            ++ E+  S +V +    G    +H H  G D   V+ G+        G    L  GD  
Sbjct: 31  SVVLETNDSVVVVWHAHPGQEIASHVHPHGQDTWTVISGEAEYHQ-GNGIVTHLKAGDIA 89

Query: 264 FTPAGDVHRVK 274
               G VH   
Sbjct: 90  IAKPGQVHGAM 100

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11 Length = 274

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 9/82 (10%), Positives = 19/82 (23%), Gaps = 9/82 (10%)

Query: 193 RELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG 252
             L   ++       I                            + V++G+  V +    
Sbjct: 51  SILGSPKLGATFVDYIATFHK-------NGQQTTGFGGDGIQTLVYVIDGRLRVSD--GQ 101

Query: 253 ERFDLTVGDYLFTPAGDVHRVK 274
           E  +L  G Y +        + 
Sbjct: 102 ETHELEAGGYAYFTPEMKMYLA 123

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha} Length = 112

 Score = 40.7 bits (95), Expect = 7e-05
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 7/74 (9%)

Query: 203 GGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLV-VLEGKKSVWNLTKGERFDLTVGD 261
              +KI R      I+     S     + +   + V V+ G   +          +  GD
Sbjct: 28  RKGLKIER------IISNGQASPPGFWYDSPQDEWVMVVSGSAGIECEGDTAPRVMRPGD 81

Query: 262 YLFTPAGDVHRVKY 275
           +L  PA   HRV +
Sbjct: 82  WLHVPAHCRHRVAW 95

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme} Length = 303

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 11/112 (9%)

Query: 197 PVEMIPGGSMKIIRESP--TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER 254
           P  + PG    +       +++ V        P+   T   ++ V++G      +  GE 
Sbjct: 73  PDNIAPGSRRLLTWHDSGASTSRVVLPPKFEAPSGIFTADLEIFVIKGA-----IQLGEW 127

Query: 255 FDLTVGDYLFTPAGDVH---RVKYYEETEFFIKWDGRWDMFFDEDLETAKKA 303
             L    Y F PAG      +V   EE E     +G   + +    E    A
Sbjct: 128 Q-LNKHSYSFIPAGVRIGSWKVLGGEEAEILWMENGSVPLEYKYAQEDHPDA 178

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 2/62 (3%)

Query: 214 TSAIVRFKAGSVEPAHHHTFGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR 272
           ++  +     +V        G     V EG+  V  +      +L  GD  F P G   +
Sbjct: 252 STISMSTTPSTVTVPTWSFPGACAFQVQEGRVVVQ-IGDYAATELGSGDVAFIPGGVEFK 310

Query: 273 VK 274
             
Sbjct: 311 YY 312

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A* Length = 350

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 227 PAHHHTFGHDL-VVLEGKKSVW---NLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282
             H H   ++     +G   +W        +   L+ GDY   P    H  +  +     
Sbjct: 64  LPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEM 123

Query: 283 IKW--DGRWDMFFDE 295
                 G ++  F  
Sbjct: 124 TGVIVPGGFEDLFYY 138

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I} Length = 97

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 202 PGGSMKIIRESPTSAI--VRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER-FDLT 258
           PG    +  ++    +   RF  G     H H+  + +V +     +    +G     LT
Sbjct: 5   PGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLT 64

Query: 259 VGDYLFTPAGDVHRVKYYEETEF-FI 283
            G     P G  H V    +TEF F+
Sbjct: 65  RGVSYTRPEGVEHNVINPSDTEFVFV 90

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A Length = 385

 Score = 40.6 bits (94), Expect = 4e-04
 Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 10/100 (10%)

Query: 194 ELNPVEMIPGGSMKII--RESPTS-----AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSV 246
                 +  GG  + +  RE P S       +R K G++   H H       ++ G   V
Sbjct: 53  SDTHNRLEKGGYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARV 112

Query: 247 WNL-TKGERF--DLTVGDYLFTPAGDVHRVKYYEETEFFI 283
             +  KG  F  D+  GD  + P+G  H ++  EE   F+
Sbjct: 113 TIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEEGAEFL 152

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP} Length = 361

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 196 NPVEMIPGGSMKIIR-------ESPTSAIVRFKAGSVEPAHHHTFGH-DLVVLEGKKSVW 247
            P+  + G  +++          + T A++  + G++   H H        VL+G+  + 
Sbjct: 210 QPLVSLGGNELRLASAKEFPGSFNMTGALIHLEPGAMRQLHWHPNADEWQYVLDGEMDLT 269

Query: 248 NLT---KGERFDLTVGDYLFTPAGDVHRVK 274
                 K     L  GD  + P G  H ++
Sbjct: 270 VFASEGKASVSRLQQGDVGYVPKGYGHAIR 299

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans} Length = 162

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 16/114 (14%), Positives = 41/114 (35%), Gaps = 27/114 (23%)

Query: 218 VRFKAGSVEPAHHHTFGHD--LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAG------- 268
           ++ + G     +H     +  + VL GK ++    + +++ +  GD++  P         
Sbjct: 51  IQIEPGKESTEYHLHHYEEEAVYVLSGKGTLT--MENDQYPIAPGDFVGFPCHAAAHSIS 108

Query: 269 ----------------DVHRVKYYEETEFFIKWDGRWDMFFDEDLETAKKAVEK 306
                           D   V Y  + +   + +G W++    D+   ++  +K
Sbjct: 109 NDGTETLVCLVIGQRLDQDVVDYPNQHKRLYRNNGEWNLVDMADIRVLREPTQK 162

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A Length = 113

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 3/49 (6%)

Query: 227 PAHHHTFGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           P + H      L V++G         G    L  G  +    G  H ++
Sbjct: 37  PDNRHRGADQWLFVVDGAGEAI--VDGHTQALQAGSLIAIERGQAHEIR 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
3he8_A	149	Ribose-5-phosphate isomerase; CTRPI B, isomerizati	100.0
3ph3_A	169	Ribose-5-phosphate isomerase; alpha-beta-alpha san	100.0
3s5p_A	166	Ribose 5-phosphate isomerase; structural genomics,	100.0
3sgw_A	184	Ribose 5-phosphate isomerase; structural genomics,	100.0
2vvr_A	149	Ribose-5-phosphate isomerase B; RPIB, carbohydrate	100.0
1o1x_A	155	Ribose-5-phosphate isomerase RPIB; structural geno	100.0
3k7p_A	179	Ribose 5-phosphate isomerase; pentose phosphate pa	100.0
2vvp_A	162	Ribose-5-phosphate isomerase B; RPIB, RV2465C, RAR	100.0
4em8_A	148	Ribose 5-phosphate isomerase B; ssgcid, seattle st	100.0
2ppw_A	216	Conserved domain protein; the putative RPIB, PSI-2	100.0
3ono_A	214	Ribose/galactose isomerase; structural genomics, P	100.0
3c5y_A	231	Ribose/galactose isomerase; structural genomics, j	100.0
2fqp_A	97	Hypothetical protein BP2299; double-stranded beta-	99.48
3fjs_A	114	Uncharacterized protein with RMLC-like cupin fold;	99.48
2pfw_A	116	Cupin 2, conserved barrel domain protein; cupin do	99.46
2bnm_A	198	Epoxidase; oxidoreductase, cupin, HTH, cation-depe	99.43
4e2g_A	126	Cupin 2 conserved barrel domain protein; MCSG, PSI	99.42
1y9q_A	192	Transcriptional regulator, HTH_3 family; transcrip	99.37
1yhf_A	115	Hypothetical protein SPY1581; structural genomics,	99.34
2b8m_A	117	Hypothetical protein MJ0764; structural genomics,	99.33
3ht1_A	145	REMF protein; cupin fold, Zn-binding, antibiotic b	99.32
2o1q_A	145	Putative acetyl/propionyl-COA carboxylase, alpha;	99.32
3h8u_A	125	Uncharacterized conserved protein with double-STR	99.32
3ibm_A	167	Cupin 2, conserved barrel domain protein; cupin 2	99.32
1v70_A	105	Probable antibiotics synthesis protein; structural	99.3
4i4a_A	128	Similar to unknown protein; structural genomics, P	99.29
2gu9_A	113	Tetracenomycin polyketide synthesis protein; X-RAY	99.29
3kgz_A	156	Cupin 2 conserved barrel domain protein; metallopr	99.29
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.27
3jzv_A	166	Uncharacterized protein RRU_A2000; structural geno	99.27
2ozj_A	114	Cupin 2, conserved barrel; cupin superfamily prote	99.27
1lr5_A	163	Auxin binding protein 1; beta jellyroll, double st	99.25
2q30_A	110	Uncharacterized protein; double-stranded beta-heli	99.25
3bal_A	153	Acetylacetone-cleaving enzyme; jelly roll, tetrame	99.23
3ebr_A	159	Uncharacterized RMLC-like cupin; structural genomi	99.22
3l2h_A	162	Putative sugar phosphate isomerase; AFE_0303, stru	99.22
3es1_A	172	Cupin 2, conserved barrel domain protein; YP_00116	99.21
1o4t_A	133	Putative oxalate decarboxylase; double-stranded be	99.2
3h7j_A	243	Bacilysin biosynthesis protein BACB; YWFC, bacilys	99.2
1vj2_A	126	Novel manganese-containing cupin TM1459; structura	99.19
2vpv_A	166	Protein MIF2, MIF2P; nucleus, mitosis, centromere,	99.19
2o8q_A	134	Hypothetical protein; cpuin-like fold, structural	99.19
2oa2_A	148	BH2720 protein; 10175341, structural genomics, joi	99.17
3i7d_A	163	Sugar phosphate isomerase; YP_168127.1, structural	99.17
4h7l_A	157	Uncharacterized protein; structural genomics, PSI-	99.16
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.15
3cew_A	125	Uncharacterized cupin protein; all beta-protein, j	99.14
3cjx_A	165	Protein of unknown function with A cupin-like FOL;	99.14
2f4p_A	147	Hypothetical protein TM1010; double-stranded beta-	99.13
3rns_A	227	Cupin 2 conserved barrel domain protein; structura	99.13
2i45_A	107	Hypothetical protein; neisseria meningitidis cupin	99.11
3lwc_A	119	Uncharacterized protein; structural genomics, unkn	99.11
1sfn_A	246	Conserved hypothetical protein; structural genomic	99.1
1sef_A	274	Conserved hypothetical protein; structural genomic	99.08
3lag_A	98	Uncharacterized protein RPA4178; functionally unkn	99.07
3d82_A	102	Cupin 2, conserved barrel domain protein; structur	99.05
1fi2_A	201	Oxalate oxidase, germin; beta-jellyroll, oxidoredu	99.03
2ozi_A	98	Hypothetical protein RPA4178; APC6210, putative pr	99.02
2xlg_A	239	SLL1785 protein, CUCA; metal binding protein, cupi	99.02
1dgw_A	178	Canavalin; duplicated swiss-roll beta barrels, loo	99.02
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	99.01
4b29_A	217	Dimethylsulfoniopropionate lyase; hydrolase, dimet	99.01
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	99.0
4e2q_A	266	Ureidoglycine aminohydrolase; BI-cupin, manganese	98.99
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.98
1x82_A	190	Glucose-6-phosphate isomerase; cupin superfamily,	98.98
2opk_A	112	Hypothetical protein; putative mannose-6-phosphate	98.98
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.97
1rc6_A	261	Hypothetical protein YLBA; structural genomics, NY	98.96
1o5u_A	101	Novel thermotoga maritima enzyme TM1112; cupin, st	98.96
1sq4_A	278	GLXB, glyoxylate-induced protein; structural genom	98.9
1sef_A	274	Conserved hypothetical protein; structural genomic	98.9
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	98.9
2q1z_B	195	Anti-sigma factor CHRR, transcriptional activator;	98.89
2pyt_A	133	Ethanolamine utilization protein EUTQ; structural	98.89
1y3t_A	337	Hypothetical protein YXAG; BI cupin, dioxygenase,	98.88
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	98.87
2vqa_A	361	SLL1358 protein, MNCA; periplasmic binding protein	98.87
4axo_A	151	EUTQ, ethanolamine utilization protein; structural	98.86
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.83
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	98.8
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.8
1sfn_A	246	Conserved hypothetical protein; structural genomic	98.75
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.74
3bcw_A	123	Uncharacterized protein; structural genomics, join	98.74
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	98.72
1j58_A	385	YVRK protein; cupin, decarboxyklase, oxalate, mang	98.7
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	98.7
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.7
2d40_A	354	Z3393, putative gentisate 1,2-dioxygenase; gentisi	98.69
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	98.66
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	98.64
3bu7_A	394	Gentisate 1,2-dioxygenase; cupin domain, oxidoredu	98.64
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	98.64
1yfu_A	174	3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxid	98.61
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	98.6
1fxz_A	476	Glycinin G1; proglycinin, legumin, SEED storage pr	98.58
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	98.53
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	98.53
1juh_A	350	Quercetin 2,3-dioxygenase; cupin, glycoprotein, be	98.53
1vr3_A	191	Acireductone dioxygenase; 13543033, structural gen	98.51
2d5f_A	493	Glycinin A3B4 subunit; soybean, globulin, 11S,SEED	98.51
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	98.46
3c3v_A	510	Arachin ARAH3 isoform; peanut allergen, allergy, g	98.45
1zvf_A	176	3-hydroxyanthranilate 3,4-dioxygenase; jellyroll b	98.45
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	98.43
2e9q_A	459	11S globulin subunit beta; cucubitin, pumpkin SEED	98.41
3nw4_A	368	Gentisate 1,2-dioxygenase; beta-barrel, oxidoreduc	98.4
2arc_A	164	ARAC, arabinose operon regulatory protein; transcr	98.39
2y0o_A	175	Probable D-lyxose ketol-isomerase; carbohydrate me	98.38
2phl_A	397	Phaseolin; plant SEED storage protein(vicilin); HE	98.37
1zrr_A	179	E-2/E-2' protein; nickel, cupin, beta helix, methi	98.34
1uij_A	416	Beta subunit of beta conglycinin; double-stranded	98.33
2ea7_A	434	7S globulin-1; beta barrel, cupin superfamily, pla	98.3
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	98.3
3ksc_A	496	LEGA class, prolegumin; PEA prolegumin, 11S SEED s	98.28
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	98.28
3kgl_A	466	Cruciferin; 11S SEED globulin, rapeseed, SEED stor	98.11
3qac_A	465	11S globulin SEED storage protein; 11S SEED storag	98.1
2cav_A	445	Protein (canavalin); vicilin, 7S SEED protein, dom	98.09
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	98.07
3d0j_A	140	Uncharacterized protein CA_C3497; beta-barrel, str	98.02
3fz3_A	531	Prunin; TREE NUT allergen, allergy, amandin, almon	97.97
3eqe_A	171	Putative cystein deoxygenase; YUBC, SR112, NESG, s	97.97
3s7i_A	418	Allergen ARA H 1, clone P41B; bicupin, vicilin, st	97.88
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	97.86
2gm6_A	208	Cysteine dioxygenase type I; structural genomics,	97.85
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.68
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	97.62
3o14_A	223	Anti-ecfsigma factor, CHRR; cupin, structural geno	97.56
2pa7_A	141	DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysug	97.54
3es4_A	116	Uncharacterized protein DUF861 with A RMLC-like C;	97.44
3gbg_A	276	TCP pilus virulence regulatory protein; cupin, hel	97.38
3eln_A	200	Cysteine dioxygenase type 1; peroxysulfenate, non-	97.22
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	97.21
3uss_A	211	Putative uncharacterized protein; cupin, three his	97.06
3ejk_A	174	DTDP sugar isomerase; YP_390184.1, structural geno	97.0
3myx_A	238	Uncharacterized protein pspto_0244; protein of unk	96.99
3kmh_A	246	D-lyxose isomerase; cupin beta-barrel, structural	96.93
2qnk_A	286	3-hydroxyanthranilate 3,4-dioxygenase; bicupin fol	96.93
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	96.81
4gjz_A	235	Lysine-specific demethylase 8; JMJC, beta barrel,	96.74
1nxm_A	197	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jell	96.41
1vrb_A	342	Putative asparaginyl hydroxylase; 2636534, structu	96.36
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	96.04
3bb6_A	127	Uncharacterized protein YEAR; structural genomics,	95.95
3al5_A	338	HTYW5, JMJC domain-containing protein C2ORF60; tRN	95.93
1ep0_A	185	DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; race	95.9
3ryk_A	205	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	95.83
2ixk_A	184	DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, l	95.81
1wlt_A	196	176AA long hypothetical DTDP-4-dehydrorhamnose 3,	95.48
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	95.47
1yud_A	170	Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, p	95.41
1dgw_X	79	Canavalin; duplicated swiss-roll beta barrels, loo	95.38
1dzr_A	183	DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase,	95.21
1oi6_A	205	PCZA361.16; epimerase, vancomycin group antibiotic	95.13
1upi_A	225	DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pat	95.0
2xdv_A	442	MYC-induced nuclear antigen; ribosome biogenesis,	94.98
2c0z_A	216	NOVW; isomerase, epimerase, antibiotic biosynthesi	94.91
3dl3_A	119	Tellurite resistance protein B; X-RAY NESG VFR98 Q	94.86
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	94.43
2qdr_A	303	Uncharacterized protein; double-stranded beta-heli	94.34
4hn1_A	201	Putative 3-epimerase in D-allose pathway; 3'-monoe	93.98
3d8c_A	349	Hypoxia-inducible factor 1 alpha inhibitor; FIH, H	93.72
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	93.7
3rcq_A	197	Aspartyl/asparaginyl beta-hydroxylase; structural	93.67
4diq_A	489	Lysine-specific demethylase NO66; structural genom	93.31
3iwt_A	178	178AA long hypothetical molybdenum cofactor biosy	92.69
3k2o_A	336	Bifunctional arginine demethylase and lysyl-hydro	91.28
2yu1_A	451	JMJC domain-containing histone demethylation PROT;	90.77
3kv4_A	447	PHD finger protein 8; epigenetics, histone CODE, c	90.72
3kv5_D	488	JMJC domain-containing histone demethylation prote	90.67
3k3o_A	371	PHF8, PHD finger protein 8; histone demethylase, c	90.62
2p17_A	277	Pirin-like protein; GK1651, structural genomics, s	90.41
3pua_A	392	GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe	90.03
1eyb_A	471	Homogentisate 1,2-dioxygenase; jelly roll, beta sa	89.97
1e5r_A	290	Proline oxidase; oxidoreductase, oxygenase, 2-oxog	88.96
3kv9_A	397	JMJC domain-containing histone demethylation prote	88.7
1uuy_A	167	CNX1, molybdopterin biosynthesis CNX1; chelatase,	88.05
1ywk_A	289	4-deoxy-L-threo-5-hexosulose-uronate ketol- isomer	88.0
2vec_A	256	YHAK, pirin-like protein YHAK; ROS, bicupin, sulfe	86.77
2ypd_A	392	Probable JMJC domain-containing histone demethyla	86.67
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	86.33
2oyz_A	94	UPF0345 protein VPA0057; unknown function, structu	85.76
1mkz_A	172	Molybdenum cofactor biosynthesis protein B; MAD, W	84.65
1tq5_A	242	Protein YHHW; bicupin, pirin, montreal-kingston ba	84.09
2l2q_A	109	PTS system, cellobiose-specific IIB component (CE;	83.83
3g7d_A	443	PHPD; non heme Fe(II) dioxygenase, cupin, biosynth	83.76
1zx5_A	300	Mannosephosphate isomerase, putative; STRU genomic	83.38
3hqx_A	111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	83.24
2qjv_A	270	Uncharacterized IOLB-like protein; structural geno	83.18
3pur_A	528	Lysine-specific demethylase 7 homolog; oxidoreduct	82.32
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	82.1
2pbq_A	178	Molybdenum cofactor biosynthesis MOG; molybdopteri	81.88
2wfp_A	394	Mannose-6-phosphate isomerase; APO-structure, meta	81.8
1j1l_A	290	Pirin; beta sandwich, cupin, iron, metatl binding	81.59
1y5e_A	169	Molybdenum cofactor biosynthesis protein B; struct	80.59
1e2b_A	106	Enzyme IIB-cellobiose; phosphotransferase system,	80.57

>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*

Probab=100.00  E-value=1e-57  Score=385.66  Aligned_cols=139  Identities=35%  Similarity=0.545  Sum_probs=134.3

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN   87 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|++     |||+++.+||++|++    |+++|||||||||+||||+||
T Consensus         1 MkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN   76 (149)
T 3he8_A            1 MKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKS----GECDRGIVICGTGLGISIAAN   76 (149)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSSSEEEEEESSSHHHHHHHH
T ss_pred             CEEEEEECchhHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEcCCcHHHHHHhh
Confidence            89999999999999999999999999999999985     599999999999999    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHh
Q 021698           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFF  159 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l  159 (309)
                      |+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    ++++++++.|.++-
T Consensus        77 Kv~GIRAAl~~d~~sA~~ar~hNnaNVl~lG~rvig~~~A~~iv~~fL~t~F~g----grh~~Rv~ki~~~e  144 (149)
T 3he8_A           77 KVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIVDTWLKAEFQG----GRHATRVGKIGEIE  144 (149)
T ss_dssp             TSTTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHHHCCCCC----THHHHHHHHHHHHH
T ss_pred             cCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999997    68999999887654

>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*

Probab=100.00  E-value=2e-57  Score=389.80  Aligned_cols=146  Identities=34%  Similarity=0.502  Sum_probs=134.4

Q ss_pred             cCCCCCCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCch
Q 021698            6 DAAAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGV   80 (309)
Q Consensus         6 ~~~~~~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~   80 (309)
                      .++..++|||+|||||+||+||+.|++||+++||||+|+|++     |||++|.+||++|++    |+++|||||||||+
T Consensus        14 ~~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGi   89 (169)
T 3ph3_A           14 LVPRGSHMKIGIGSDHGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKS----GECDRGIVICGTGL   89 (169)
T ss_dssp             -------CEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSSSEEEEEESSSH
T ss_pred             CcccCCCCEEEEEeCchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEcCCcH
Confidence            455568899999999999999999999999999999999985     599999999999999    99999999999999


Q ss_pred             hhhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHh
Q 021698           81 GVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFF  159 (309)
Q Consensus        81 G~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l  159 (309)
                      ||||+|||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    ++++++++.|.++-
T Consensus        90 G~sIaANKv~GIRAAlc~d~~sA~~aR~hNnANVL~lG~Rvig~~lA~~Iv~~fL~t~F~g----gRh~~Rv~kI~~~e  164 (169)
T 3ph3_A           90 GISIAANKVPGIRAAVCTNSYMARMSREHNDANILALGERVVGLDLALDIVDTWLKAEFQG----GRHATRVGKIGEIE  164 (169)
T ss_dssp             HHHHHHTTSTTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHHHCCCCC----THHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHcCCCCC----CchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999997    68999998887654

>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}

Probab=100.00  E-value=7.2e-58  Score=391.07  Aligned_cols=143  Identities=32%  Similarity=0.444  Sum_probs=129.8

Q ss_pred             CCCCCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698            8 AAPHPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV   82 (309)
Q Consensus         8 ~~~~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~   82 (309)
                      +.+.+|||+|||||+||+||+.|++||+++||||+|+|++     |||+|+.+||++|++    |+++|||||||||+||
T Consensus        17 ~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~----g~~d~GIliCGTGiG~   92 (166)
T 3s5p_A           17 QGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTS----GRADCCILVCGTGIGI   92 (166)
T ss_dssp             --CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHT----TSCSEEEEEESSSHHH
T ss_pred             CCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHc----CCCcEEEEEcCCcHHH
Confidence            3456699999999999999999999999999999999985     599999999999999    9999999999999999


Q ss_pred             hhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698           83 AIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF  158 (309)
Q Consensus        83 ~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~  158 (309)
                      ||+|||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    +++++++++|.++
T Consensus        93 sIaANKv~GIRAAlc~d~~sA~laR~hNnANVL~lG~Rvig~~lA~~Iv~~fL~t~F~g----gRH~~RV~kI~~~  164 (166)
T 3s5p_A           93 SIAANKMKGIRCALCSTEYDAEMARKHNNANALALGGRTTGPEVAASILSRFLSTNFEG----GRHAARIAKISAM  164 (166)
T ss_dssp             HHHHHTSTTCCEEECSSHHHHHHHHHTTCCCEEEEETTTSCHHHHHHHHHHHHHCCCCH----HHHHTCCCC----
T ss_pred             HHHhhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHcCCCCC----cchHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999997    6788777776543

>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB: 3sdw_A 3qd5_A*

Probab=100.00  E-value=2.1e-57  Score=393.58  Aligned_cols=149  Identities=29%  Similarity=0.419  Sum_probs=137.8

Q ss_pred             cCCCC-CCcEEEEEeCcccHHHHHHHHHHHHhCC--CcEEEecCC------CCcchhHHHHHHhhcCCCCCCcceEEEEe
Q 021698            6 DAAAP-HPLKIIAGADSFGAELKDALVSHLRSLN--IDVEDLGTS------DYYSIGAEVGRRVSSSDSSETTTRGLVAC   76 (309)
Q Consensus         6 ~~~~~-~~mkI~ig~D~~g~~lk~~l~~~l~~~g--~~v~d~g~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~c   76 (309)
                      |++.+ ++|||+|||||+||+||+.|++||+++|  |||+|+|++      |||+|+.+||++|++    |+++||||||
T Consensus        22 ~~~~~~~~MkIaIgsDHaG~~LK~~i~~~L~~~G~g~eV~D~G~~s~~e~~DYPd~a~~vA~~V~~----ge~d~GIliC   97 (184)
T 3sgw_A           22 MAATPLPPLRLAIACDDAGVSYKEALKAHLSDNPLVSSITDVGVTSTTDKTAYPHVAIQAAQLIKD----GKVDRALMIC   97 (184)
T ss_dssp             -----CCCEEEEEEECGGGHHHHHHHHHHHTTCTTEEEEEECSCCSTTCCCCHHHHHHHHHHHHHT----TSCSEEEEEE
T ss_pred             cCCCCCCCcEEEEEECchhHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCCCCHHHHHHHHHHHHHc----CCCcEEEEEc
Confidence            66666 8899999999999999999999999999  799999986      699999999999999    9999999999


Q ss_pred             cCchhhhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHH
Q 021698           77 GTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLS  156 (309)
Q Consensus        77 gtG~G~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~  156 (309)
                      |||+||||+|||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++   .+++++++++|.
T Consensus        98 GTGiG~sIaANKv~GIRAAlc~d~~sA~laR~HNnANVL~lG~Rvig~elA~~Ivd~fL~t~Feg---ggRH~~RV~kI~  174 (184)
T 3sgw_A           98 GTGLGVAISANKVPGIRAVTAHDTFSVERAILSNDAQVLCFGQRVIGIELAKRLAGEWLTYRFDQ---KSASAQKVQAIS  174 (184)
T ss_dssp             SSSHHHHHHHHTSTTCCEEECCSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHTTCCCCT---TSHHHHHHHHHH
T ss_pred             CCcHHHhhhhhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEchhhcCHHHHHHHHHHHHcCCCCC---CchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999985   469999999998


Q ss_pred             hHhhh
Q 021698          157 CFFDK  161 (309)
Q Consensus       157 ~~l~~  161 (309)
                      ++-.+
T Consensus       175 ~~E~~  179 (184)
T 3sgw_A          175 DYEKK  179 (184)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            76543

>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A

Probab=100.00  E-value=4.6e-57  Score=382.05  Aligned_cols=139  Identities=34%  Similarity=0.489  Sum_probs=134.0

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN   87 (309)
                      |||+|||||+||+||+.|++||+++||||+|+|++     |||+++.+||++|++    |+++|||||||||+||||+||
T Consensus         2 MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~siaAN   77 (149)
T 2vvr_A            2 KKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAG----GEVDGGILICGTGVGISIAAN   77 (149)
T ss_dssp             CEEEEEECTTGGGGHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSSSEEEEEESSSHHHHHHHH
T ss_pred             cEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHc----CCCceEEEEeCCcHHHHHHHh
Confidence            89999999999999999999999999999999984     599999999999999    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHh
Q 021698           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFF  159 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l  159 (309)
                      |+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    ++++++++.|.++-
T Consensus        78 Kv~GIRAal~~d~~sA~~ar~hNnaNVl~lG~rvig~ela~~iv~~fL~t~f~g----grh~~Rv~ki~~~e  145 (149)
T 2vvr_A           78 KFAGIRAVVCSEPYSAQLSRQNNDTNVLAFGSRVVGLELAKMIVDAWLGAQYEG----GRHQQRVEAITAIE  145 (149)
T ss_dssp             TSTTCCEEECSSHHHHHHHHHHHCCCEEEEETTTBCHHHHHHHHHHHHHCCCCC----TTHHHHHHHHHHHH
T ss_pred             cCCCeEEEEeCCHHHHHHHHHhCCCcEEEECccccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999997    69999999887653

>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1

Probab=100.00  E-value=1.7e-56  Score=379.57  Aligned_cols=138  Identities=36%  Similarity=0.508  Sum_probs=132.4

Q ss_pred             CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhh
Q 021698           11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIF   85 (309)
Q Consensus        11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~   85 (309)
                      ...||+|||||+||+||+.|++||+++||||+|+|++     |||+++.+||++|++    |+++|||||||||+||||+
T Consensus        11 ~~~~i~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~sia   86 (155)
T 1o1x_A           11 HHVKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILS----NEADFGILLCGTGLGMSIA   86 (155)
T ss_dssp             CCCEEEEEECSTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSCSEEEEEESSSHHHHHH
T ss_pred             cceeEEEeeCchHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHc----CCCceEEEEcCCcHHHHHH
Confidence            4579999999999999999999999999999999984     599999999999999    9999999999999999999


Q ss_pred             hcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHH
Q 021698           86 ANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLS  156 (309)
Q Consensus        86 aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~  156 (309)
                      |||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    ++++++++.|.
T Consensus        87 ANKv~GIRAAl~~d~~sA~~ar~hNnANVL~lG~rvig~elA~~Iv~~fL~t~F~g----gRh~~RV~ki~  153 (155)
T 1o1x_A           87 ANRYRGIRAALCLFPDMARLARSHNNANILVLPGRLIGAELAFWIVDTFLSTPFDG----GRHERRIRKID  153 (155)
T ss_dssp             HTTSTTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHHHCCCCC----TTHHHHHHHHT
T ss_pred             hhcCCCeEEEEeCCHHHHHHHHHcCCCcEEEECCcccCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999997    68888887764

>3k7p_A Ribose 5-phosphate isomerase; pentose phosphate pathway, type B ribose 5-phosphate isomera (RPIB), R5P; 1.40A {Trypanosoma cruzi} SCOP: c.121.1.0 PDB: 3k7s_A* 3k7o_A* 3k8c_A* 3m1p_A

Probab=100.00  E-value=1.3e-56  Score=387.05  Aligned_cols=144  Identities=26%  Similarity=0.359  Sum_probs=136.4

Q ss_pred             CCCcEEEEEeCcccHHHHHHHHHHHHh--CCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698           10 PHPLKIIAGADSFGAELKDALVSHLRS--LNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV   82 (309)
Q Consensus        10 ~~~mkI~ig~D~~g~~lk~~l~~~l~~--~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~   82 (309)
                      ++.|||+|||||+||+||+.|++||++  +||||+|+|++     |||+||.+||++|++    |+++|||||||||+||
T Consensus        20 ~M~MkIaIgsDhaG~~lK~~i~~~L~~~~~G~eV~D~G~~s~~s~DYPd~a~~vA~~V~~----g~~d~GIliCGTGiG~   95 (179)
T 3k7p_A           20 HMTRRVAIGTDHPAFAIHENLILYVKEAGDEFVPVYCGPKTAESVDYPDFASRVAEMVAR----KEVEFGVLAAGSGIGM   95 (179)
T ss_dssp             -CCEEEEEEECTGGGGGHHHHHHHHHHTCTTEEEEECSCSSSSCCCHHHHHHHHHHHHHT----TSSSEEEEEESSSHHH
T ss_pred             cCceEEEEEECchHHHHHHHHHHHHHhcCCCCeEEEcCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEccCcHHH
Confidence            456899999999999999999999999  99999999985     599999999999999    9999999999999999


Q ss_pred             hhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhh
Q 021698           83 AIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFD  160 (309)
Q Consensus        83 ~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~  160 (309)
                      +|+|||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++   .++++++++.|.++-.
T Consensus        96 sIaANKv~GIRAAlc~d~~sA~laR~HNnANVL~lG~Rvig~elA~~Ivd~fL~t~Feg---~gRH~~RV~kI~~~E~  170 (179)
T 3k7p_A           96 SIAANKVPGVRAALCHDHYTAAMSRIHNDANIVCVGERTTGVEVIREIIITFLQTPFSG---EERHVRRIEKIRAIEA  170 (179)
T ss_dssp             HHHHHTSTTCCEEECCSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHH
T ss_pred             hhHhhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHcCCCCC---CCchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999986   5689999988877643

>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A

Probab=100.00  E-value=3.7e-56  Score=380.94  Aligned_cols=142  Identities=26%  Similarity=0.399  Sum_probs=134.9

Q ss_pred             CcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhh
Q 021698           12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIF   85 (309)
Q Consensus        12 ~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~   85 (309)
                      +|||+|||||+||+||+.|++||+++||||+|+|++      |||+++.+||++|++    |+++|||||||||+||||+
T Consensus         3 ~MkIaigsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~----g~~d~GIliCGTGiG~sia   78 (162)
T 2vvp_A            3 GMRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVA----DPGSLGIVLGGSGNGEQIA   78 (162)
T ss_dssp             CCEEEEEECHHHHHHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHH----STTCEEEEEESSSHHHHHH
T ss_pred             CCEEEEEeCchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHc----CCCceEEEEeCCcHHHHHH
Confidence            389999999999999999999999999999999963      599999999999999    9999999999999999999


Q ss_pred             hcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhh
Q 021698           86 ANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFD  160 (309)
Q Consensus        86 aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~  160 (309)
                      |||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++   .++++++++.|.++-.
T Consensus        79 ANKv~GIRAAl~~d~~sA~~ar~hNnaNVL~lG~rvig~elA~~iv~~fL~t~F~g---g~rh~~Rv~ki~~~e~  150 (162)
T 2vvp_A           79 ANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSK---AQRHQRRIDILAEYER  150 (162)
T ss_dssp             HHTSTTCCEEECCSHHHHHHHHHTTCCSEEEEEGGGSCHHHHHHHHHHHHHSCCCC---CHHHHHHHHHHHHHHH
T ss_pred             HhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHcCCCCC---ChhHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999997   3489999998876644

>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}

Probab=100.00  E-value=5.8e-56  Score=373.94  Aligned_cols=135  Identities=31%  Similarity=0.430  Sum_probs=128.0

Q ss_pred             CcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhh
Q 021698           12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIF   85 (309)
Q Consensus        12 ~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~   85 (309)
                      .|||+|||||+||+||+.|++||+++||||+|+|++      |||+++.+||++|+      +++|||||||||+||||+
T Consensus         7 ~mkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~------~~d~GIliCGTGiG~sia   80 (148)
T 4em8_A            7 VKRVFLSSDHAGVELRLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVS------DTSFGVLICGTGIGMSIA   80 (148)
T ss_dssp             CSEEEEEECGGGHHHHHHHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCB------TTBEEEEEESSSHHHHHH
T ss_pred             eeEEEEEECchhHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHH------HhCeEEEEccCcHHHHHH
Confidence            479999999999999999999999999999999973      49999999999998      479999999999999999


Q ss_pred             hcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHH
Q 021698           86 ANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLS  156 (309)
Q Consensus        86 aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~  156 (309)
                      |||+||||||+|+|+++|+|+|+||||||||||+|++|+++|++|+++||+|+|++    +++++++++|.
T Consensus        81 ANKv~GIRAAl~~d~~sA~~ar~hNnANVL~lG~rvig~~lA~~iv~~fL~t~F~g----grh~~Rv~ki~  147 (148)
T 4em8_A           81 ANRHKNIRAALCSSTMLAKLSREHNDANVLCFGSRYIDPDTAQSVLYTFMTTAFLG----GRHAVRVQKLG  147 (148)
T ss_dssp             HTTSTTCCEEECSSHHHHHHHHHHHCCCEEEEETTTSCHHHHHHHHHHHHHCCCCC----THHHHHHHHHT
T ss_pred             HhcCCCeEEEEeCCHHHHHHHHHhCCCcEEEEchhhhCHHHHHHHHHHHHcCCCCC----CchHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999997    58887777664

>2ppw_A Conserved domain protein; the putative RPIB, PSI-2, protein initiative, MCSG, structural genomics, midwest center for S genomics; HET: MSE; 2.01A {Streptococcus pneumoniae}

Probab=100.00  E-value=2.3e-52  Score=371.36  Aligned_cols=138  Identities=20%  Similarity=0.275  Sum_probs=131.2

Q ss_pred             CCcEEEEEeCcccHHHH-----HHHHHHHHhCCCcEEEecCC--------CCcchhHHHHHHhhcCCCCCCcceEEEEec
Q 021698           11 HPLKIIAGADSFGAELK-----DALVSHLRSLNIDVEDLGTS--------DYYSIGAEVGRRVSSSDSSETTTRGLVACG   77 (309)
Q Consensus        11 ~~mkI~ig~D~~g~~lk-----~~l~~~l~~~g~~v~d~g~~--------~y~~~a~~va~~v~~~~~~~~~~~gi~~cg   77 (309)
                      +.|||+|||||+ ++||     +.|++||+++||||+|+|++        |||++|.+||++|.+    |+++|||+|||
T Consensus         2 ~~MkIaIgsDha-~~lKn~ilk~~i~~~L~~~G~eV~D~G~~s~~d~~s~DYPd~a~~vA~~V~~----g~~d~GIliCG   76 (216)
T 2ppw_A            2 NAMKIALINENS-QASKNHIIYDSLKEATDKKGYQLFNYGMRGEEGESQLTYVQNGLMAAILLNT----KAVDFVVTGCG   76 (216)
T ss_dssp             -CCEEEECCCTT-TGGGHHHHHHHHHHHHHHHTCEEEECSCCSCTTCCCCCHHHHHHHHHHHHHT----TSCSEEEEEES
T ss_pred             CCcEEEEEcCCh-HhhhhhhHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHc----CCCCeEEEEcC
Confidence            359999999999 9988     89999999999999999985        499999999999999    99999999999


Q ss_pred             CchhhhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecc-ccc--CHHHH-HHHHHHHhcCCCCCCCCCCCCchhhH
Q 021698           78 TGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSG-MST--SKESA-VEILDTWLKTPFKAPCPASGLKPWDE  153 (309)
Q Consensus        78 tG~G~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~-~~~--~~~~a-~~i~~~~l~~~f~~~~~~~~~~~~l~  153 (309)
                      ||+||||+|||+||||||+|+|+++|+|+|+||||||||||+ |++  |+++| ++|+++||+|+|++|||.++.+|...
T Consensus        77 TGiG~sIAANKv~GIRAAlc~d~~sA~laR~HNnANVL~lG~~rvi~~g~ela~~~Iv~~fL~t~F~gG~~~~R~~~~~r  156 (216)
T 2ppw_A           77 TGVGAMLALNSFPGVVCGLAVDPTDAYLYSQINGGNALSIPYAKGFGWGAELTLKLMFERLFAEEMGGGYPRERVIPEQR  156 (216)
T ss_dssp             SSHHHHHHHTTSTTCCEEECSSHHHHHHHHHHTCCSEEEEESSTTCCTTHHHHHHHHHHHHHSSCTTCCSSGGGHHHHHH
T ss_pred             CcHHHHHHhhcCCCeEEEEeCCHHHHHHHHHhcCceEEEeCCceecccCHHHHHHHHHHHHHcCCcCCCCChHHHhHHHH
Confidence            999999999999999999999999999999999999999999 988  99999 79999999999999999999887644

>3ono_A Ribose/galactose isomerase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.75A {Vibrio parahaemolyticus}

Probab=100.00  E-value=3.6e-52  Score=369.65  Aligned_cols=138  Identities=25%  Similarity=0.347  Sum_probs=131.5

Q ss_pred             CCcEEEEEeCcccHHHHH-----HHHHHHHhCCCcEEEec--CC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecC
Q 021698           11 HPLKIIAGADSFGAELKD-----ALVSHLRSLNIDVEDLG--TS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGT   78 (309)
Q Consensus        11 ~~mkI~ig~D~~g~~lk~-----~l~~~l~~~g~~v~d~g--~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgt   78 (309)
                      ++|||+|||||+ ++||+     .|++||+++||||+|+|  ++     |||++|.+||++|.+    |+++|||+||||
T Consensus         2 ~~MkIaigsDha-~~lK~~~i~~~l~~~L~~~G~eV~D~G~~~~~~~~~dYpd~a~~vA~~V~~----g~~d~GIliCGT   76 (214)
T 3ono_A            2 NAMKIALMMENS-QAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNS----KAVDFVVTGCGT   76 (214)
T ss_dssp             CCCEEEECCCGG-GGGGHHHHHHHHHHHHHHTTCEEEECSCSSTTSSCCCHHHHHHHHHHHHHT----TSCSEEEEEESS
T ss_pred             CccEEEEECCCc-HHHHChhHHHHHHHHHHHCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHHc----CCCCEEEEEcCC
Confidence            579999999999 99999     99999999999999999  33     699999999999999    999999999999


Q ss_pred             chhhhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeeccc---ccCHHHHHH-HHHHHhcCCCCCCCCCCCCchhhH
Q 021698           79 GVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGM---STSKESAVE-ILDTWLKTPFKAPCPASGLKPWDE  153 (309)
Q Consensus        79 G~G~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~---~~~~~~a~~-i~~~~l~~~f~~~~~~~~~~~~l~  153 (309)
                      |+||+|+|||+||||||+|+|+++|+|+|+||||||||||+|   ++|+++|.+ |+++||+|+|++|||.++.++...
T Consensus        77 GiG~siaANKv~GIRAAlc~d~~sA~laR~hNnANVL~lG~rr~~~ig~elA~~~Ivd~fL~t~F~gGr~~~R~~~~~r  155 (214)
T 3ono_A           77 GQGALMSCNLHPGVVCGYCLEPSDAFLFNQINNGNAISLAFAKGFGWAGELNVRYIFEKAFTGKRGEGYPIERAAPQQA  155 (214)
T ss_dssp             SHHHHHHHHTSTTCCEEECSSHHHHHHHHHHTCCSEEEEESSTTCCTTHHHHHHHHHHHHSSSCCCCCSSGGGHHHHHH
T ss_pred             cHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHcCCcEEEecCcccccccHHHHHHHHHHHHHcCCcCCCCChhHHHHHHH
Confidence            999999999999999999999999999999999999999996   799999985 999999999999999999887644

>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=9.3e-49  Score=349.79  Aligned_cols=139  Identities=21%  Similarity=0.281  Sum_probs=131.3

Q ss_pred             CCcEEEEEeCcccH--HHHHHHHHHHHhCCCcEEEecCC--------CCcchhHHHHHHhhcCCCCCCcceEEEEecCch
Q 021698           11 HPLKIIAGADSFGA--ELKDALVSHLRSLNIDVEDLGTS--------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGV   80 (309)
Q Consensus        11 ~~mkI~ig~D~~g~--~lk~~l~~~l~~~g~~v~d~g~~--------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~   80 (309)
                      ++.+|++++|.+|.  .||+.|++||+++||||+|+|++        |||++|.+||++|.+    |+++|||+|||||+
T Consensus        20 mkiali~~~sqa~kN~~lKe~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~----g~~d~GIliCGTGi   95 (231)
T 3c5y_A           20 MKIALIIENSQAAKNAVVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNS----GAADFVVTGCGTGM   95 (231)
T ss_dssp             CEEEECCCGGGGGGHHHHHHHHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHH----TSCSEEEEEESSSH
T ss_pred             ceEEEEecCCHhhhHHHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHc----CCCCeEEEEcCCcH
Confidence            44556778999999  99999999999999999999985        499999999999999    99999999999999


Q ss_pred             hhhhhhcCCCceEEEEeCCHHHHHHHHhhcCcceeeecc-ccc--CHHHH-HHHHHHHhcCCCCCCCCCCCCchhhH
Q 021698           81 GVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSG-MST--SKESA-VEILDTWLKTPFKAPCPASGLKPWDE  153 (309)
Q Consensus        81 G~~i~aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~-~~~--~~~~a-~~i~~~~l~~~f~~~~~~~~~~~~l~  153 (309)
                      ||||+|||+||||||+|+|+++|+|+|+||||||||||+ |++  |+++| ++|+++||+|+|++|||.++.+|...
T Consensus        96 G~sIAANKv~GIRAAlc~d~~sA~laR~HNnANVL~lGa~rvig~g~elA~~~Ivd~fL~teFeGGypq~R~~~~~r  172 (231)
T 3c5y_A           96 GSMLAANAMPGVFCGLVIDPTDAFLFGQINDGNAISMPYSKGFGWAAELNLQDVYRKLFDGERGLGYPRERAEIMRK  172 (231)
T ss_dssp             HHHHHHHTSTTCCEEECCSHHHHHHHHHHTCCSEEEEESSTTCCTTHHHHHHHHHHHHHSSCCCCCSSGGGHHHHHH
T ss_pred             HHHHHHhcCCCeEEEEeCCHHHHHHHHHhcCccEEEECCceecccCHHHHHHHHHHHHHcCCcCCCCCchhhhHHHH
Confidence            999999999999999999999999999999999999999 988  99999 69999999999999999999987754

>2fqp_A Hypothetical protein BP2299; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: 1PE; 1.80A {Bordetella pertussis tohama I}

Probab=99.48  E-value=1.9e-13  Score=106.34  Aligned_cols=82  Identities=23%  Similarity=0.230  Sum_probs=70.0

Q ss_pred             cCCceEEEeeeCCCe--EEEEEcCCCcCCccccCcc-EEEEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEE
Q 021698          201 IPGGSMKIIRESPTS--AIVRFKAGSVEPAHHHTFG-HDLVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKY  275 (309)
Q Consensus       201 ~pgg~~~il~~~~~~--~~v~l~pG~~~p~H~H~~~-e~vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n  275 (309)
                      +|++..+++......  ..++++||+..++|.|+.. |++||++|++++  .+++  +.+.|++||++|+|+|++|+++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~Pg~~~~~H~H~~~~e~~~Vl~G~~~~--~~~~g~~~~~l~~Gd~~~~p~~~~H~~~N   81 (97)
T 2fqp_A            4 RPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLL--ETPEGSVTSQLTRGVSYTRPEGVEHNVIN   81 (97)
T ss_dssp             CCBCEEEEEEESSSEEEEEEEECTTCBCCSEECCSCEEEEESSCEEEEE--EETTEEEEEEECTTCCEEECTTCEEEEEC
T ss_pred             cCCCceeEEEcCCeEEEEEEEECCCCCCCCEECCCCcEEEEEeecEEEE--EeCCCCEEEEEcCCCEEEeCCCCcccCEe
Confidence            577888877666553  6788999999999999987 488999999999  6777  78999999999999999999999


Q ss_pred             cCCeEEEEE
Q 021698          276 YEETEFFIK  284 (309)
Q Consensus       276 ~~d~~~~i~  284 (309)
                      .+++.+.++
T Consensus        82 ~g~~~~~~l   90 (97)
T 2fqp_A           82 PSDTEFVFV   90 (97)
T ss_dssp             CSSSCEEEE
T ss_pred             CCCCcEEEE
Confidence            997766544

>3fjs_A Uncharacterized protein with RMLC-like cupin fold; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha JMP134}

Probab=99.48  E-value=4.1e-13  Score=107.87  Aligned_cols=67  Identities=24%  Similarity=0.328  Sum_probs=62.3

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ..++++||...++|+|+..|++||++|++++  .++++++.|++||++++|+|++|+++|.++..++++
T Consensus        39 ~~~~l~~G~~~~~H~H~~~e~~~Vl~G~~~~--~i~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~~~  105 (114)
T 3fjs_A           39 MRMVLPAGKQVGSHSVAGPSTIQCLEGEVEI--GVDGAQRRLHQGDLLYLGAGAAHDVNAITNTSLLVT  105 (114)
T ss_dssp             EEEEECTTCEEEEECCSSCEEEEEEESCEEE--EETTEEEEECTTEEEEECTTCCEEEEESSSEEEEEE
T ss_pred             EEEEECCCCccCceeCCCcEEEEEEECEEEE--EECCEEEEECCCCEEEECCCCcEEEEeCCCcEEEEE
Confidence            6788999999999999999999999999999  789999999999999999999999999998877643

>2pfw_A Cupin 2, conserved barrel domain protein; cupin domain, struc genomics, joint center for structural genomics, JCSG; 1.90A {Shewanella frigidimarina}

Probab=99.46  E-value=1.2e-12  Score=104.02  Aligned_cols=95  Identities=18%  Similarity=0.165  Sum_probs=76.1

Q ss_pred             eeecCCCCceeecCCceEEEeeeCCC--eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEEC
Q 021698          189 LVKNRELNPVEMIPGGSMKIIRESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTP  266 (309)
Q Consensus       189 l~~~~~~~~~~~~pgg~~~il~~~~~--~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP  266 (309)
                      +.+..+.+.....+|...+++.....  ...++++||...++|+|+..|++||++|++++  .++++.+.|++||++++|
T Consensus         8 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~--~~~~~~~~l~~Gd~~~ip   85 (116)
T 2pfw_A            8 FSFGEQTEIEDIGGGLKRQMLGFNHELMAVKIWFDKGAEGYVHAHRHSQVSYVVEGEFHV--NVDGVIKVLTAGDSFFVP   85 (116)
T ss_dssp             EECTTTSCCEECSTTEEEEEEEEETTEEEEEEEECTTEEEEEECCSSEEEEEEEEECEEE--EETTEEEEECTTCEEEEC
T ss_pred             EecccCceeeeCCCCeEEEEEecCCceEEEEEEECCCCcCCcEECCcceEEEEEeeEEEE--EECCEEEEeCCCCEEEEC
Confidence            44455555555556666676653333  25678899999999999999999999999999  679999999999999999


Q ss_pred             CCCcEEEEEcCCeEEEEEE
Q 021698          267 AGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       267 ~g~~H~~~n~~d~~~~i~~  285 (309)
                      +|++|+++|.++..++.+.
T Consensus        86 ~~~~H~~~~~~~~~~l~v~  104 (116)
T 2pfw_A           86 PHVDHGAVCPTGGILIDTF  104 (116)
T ss_dssp             TTCCEEEEESSCEEEEEEE
T ss_pred             cCCceeeEeCCCcEEEEEE
Confidence            9999999999877665443

>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A

Probab=99.43  E-value=1.5e-12  Score=113.21  Aligned_cols=141  Identities=13%  Similarity=0.052  Sum_probs=96.5

Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhhhccccccccCCCCCCCCCCCCccceeeeeecCCCCc---e-eecCCc
Q 021698          129 EILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKNDKLDSDSSGSTCSICCLVKNRELNP---V-EMIPGG  204 (309)
Q Consensus       129 ~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~s~~el~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~-~~~pgg  204 (309)
                      ..+..|.+-.-.     .++...+.+|+++|++++.+|+..+.+...+     .    ..+++..+...   . ....+.
T Consensus        38 ~~ls~~e~g~~~-----~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~-----~----~~~~~~~e~~~~~~~~~~~~~~  103 (198)
T 2bnm_A           38 ETVAAWENGEGG-----ELTLTQLGRIAHVLGTSIGALTPPAGNDLDD-----G----VIIQMPDERPILKGVRDNVDYY  103 (198)
T ss_dssp             HHHHHHHTTTCT-----TCBHHHHHHHHHHTTSCTGGGSCCCCCCCBT-----T----BCCCCGGGCCEECCSTTCSTTE
T ss_pred             HHHHHHHcCCCC-----CCCHHHHHHHHHHhCCCHHHEEccCCCCccc-----C----ceEEeecccccccccccCCCce
Confidence            346666665431     3677888999999999999998754210001     0    01222222211   1 112333


Q ss_pred             eEEEeeeCC---C--eEEEEEcCCCcCC---ccccCccEEEEEEeCEEEEEEEeCC----eEEEecCCcEEEECCCCcEE
Q 021698          205 SMKIIRESP---T--SAIVRFKAGSVEP---AHHHTFGHDLVVLEGKKSVWNLTKG----ERFDLTVGDYLFTPAGDVHR  272 (309)
Q Consensus       205 ~~~il~~~~---~--~~~v~l~pG~~~p---~H~H~~~e~vyVl~G~l~v~~~~~~----~~~~L~pGd~i~iP~g~~H~  272 (309)
                      .+..+....   .  ...++++||...+   +|+|+..|++||++|++++  .+++    +.+.|++||++++|++++|+
T Consensus       104 ~~~~l~~~~~~~~~~~~~~~~~pg~~~~~~~~h~h~~~E~~~Vl~G~~~~--~~~~~~~~~~~~l~~GD~~~~~~~~~H~  181 (198)
T 2bnm_A          104 VYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHM--KWGDKENPKEALLPTGASMFVEEHVPHA  181 (198)
T ss_dssp             EEEECCCCTTSTTCEEEEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEE--EESCTTSCEEEEECTTCEEEECTTCCEE
T ss_pred             EEEeeccCCCCCcceEEEEEEcCCCCCcccccccCCCeEEEEEEeeeEEE--EECCcCCcccEEECCCCEEEeCCCCceE
Confidence            445553321   1  2567899998875   7999999999999999999  6788    99999999999999999999


Q ss_pred             EEEc-CCeEEEEEE
Q 021698          273 VKYY-EETEFFIKW  285 (309)
Q Consensus       273 ~~n~-~d~~~~i~~  285 (309)
                      ++|. ++..+.++|
T Consensus       182 ~~n~~~~~~~~~l~  195 (198)
T 2bnm_A          182 FTAAKGTGSAKLIA  195 (198)
T ss_dssp             EEESTTSCCEEEEE
T ss_pred             EEecCCCCCeEEEE
Confidence            9999 776655444

>4e2g_A Cupin 2 conserved barrel domain protein; MCSG, PSI-biology, structural genomics, GEBA, midwest center structural genomics; HET: MSE; 1.86A {Sphaerobacter thermophilus}

Probab=99.42  E-value=1.3e-12  Score=105.34  Aligned_cols=90  Identities=26%  Similarity=0.319  Sum_probs=72.7

Q ss_pred             CCCCceeecCCceEEEeeeCCC-eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcE
Q 021698          193 RELNPVEMIPGGSMKIIRESPT-SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVH  271 (309)
Q Consensus       193 ~~~~~~~~~pgg~~~il~~~~~-~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H  271 (309)
                      .+.+.....+|...+++..... ...++++||...++|+|+..|++||++|++++  .++++.+.|++||++++|+|++|
T Consensus        20 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~--~~~~~~~~l~~Gd~~~ip~~~~H   97 (126)
T 4e2g_A           20 TEVRSFSPLPGFAMQAIQGKNLMLNWVRIEPNTEMPAHEHPHEQAGVMLEGTLEL--TIGEETRVLRPGMAYTIPGGVRH   97 (126)
T ss_dssp             GGSCCBCSSTTEEEEEEECSSCEEEEEEECTTCEEEEECCSSEEEEEEEEECEEE--EETTEEEEECTTEEEEECTTCCE
T ss_pred             ccceecccCCCeEEEEEeCCCeEEEEEEECCCCcCCCccCCCceEEEEEEeEEEE--EECCEEEEeCCCCEEEECCCCcE
Confidence            3333344455777777654443 36789999999999999999999999999999  78999999999999999999999


Q ss_pred             EEEEcCC-eEEEEE
Q 021698          272 RVKYYEE-TEFFIK  284 (309)
Q Consensus       272 ~~~n~~d-~~~~i~  284 (309)
                      ++.|.++ ..++.+
T Consensus        98 ~~~~~~~~~~~l~v  111 (126)
T 4e2g_A           98 RARTFEDGCLVLDI  111 (126)
T ss_dssp             EEECCTTCEEEEEE
T ss_pred             EeEECCCCEEEEEE
Confidence            9999987 444433

>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15

Probab=99.37  E-value=1.3e-11  Score=107.00  Aligned_cols=129  Identities=11%  Similarity=-0.043  Sum_probs=91.5

Q ss_pred             HHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhhhccccccccCC-CCCCCCCCCCccceeeeeecCCCCceeecCCceEE
Q 021698          129 EILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSMTEMPLIGKN-DKLDSDSSGSTCSICCLVKNRELNPVEMIPGGSMK  207 (309)
Q Consensus       129 ~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~s~~el~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~pgg~~~  207 (309)
                      ..+..|.+..-      .++...+.+|+++|++++.+|+..+.+ ...+            ...       ....+..+.
T Consensus        39 ~~is~~e~g~~------~p~~~~l~~ia~~l~v~~~~l~~~~~~~~~~~------------~~~-------~~~~g~~~~   93 (192)
T 1y9q_A           39 AMLGQIERGES------SPTIATLWKIASGLEASFSAFFANDPQLLSSE------------RSF-------PDDLNMKIH   93 (192)
T ss_dssp             HHHHHHHTTCS------CCCHHHHHHHHHHHTCCSGGGGTTSTHHHHHC------------CBC-------TTCTTEEEE
T ss_pred             HHHHHHHcCCC------CCCHHHHHHHHHHHCcCHHHHcCCCCCCCccc------------eEE-------eCCCCEEEE
Confidence            34667766532      367778999999999999999976531 0000            000       001122233


Q ss_pred             EeeeC---CC--eEEEEEcCCCcCC--ccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          208 IIRES---PT--SAIVRFKAGSVEP--AHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       208 il~~~---~~--~~~v~l~pG~~~p--~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      .+...   ..  ...++++||...+  +|+|...|++||++|++++  .++++.+.|++||++++|++++|+++|.++.+
T Consensus        94 ~l~~~~~~~~~~~~~~~~~pg~~~~~~~H~h~~~E~~~Vl~G~~~~--~~~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~  171 (192)
T 1y9q_A           94 TLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKV--FFDEQWHELQQGEHIRFFSDQPHGYAAVTEKA  171 (192)
T ss_dssp             EEEEEETTTTEEEEEEEECTTCEEEECCCSTTCEEEEEEEESCEEE--EETTEEEEECTTCEEEEECSSSEEEEESSSCE
T ss_pred             EeccCCCCCcEEEEEEEECCCCCccCCCCCCCCEEEEEEEEeEEEE--EECCEEEEeCCCCEEEEcCCCCeEeECCCCCc
Confidence            33211   11  2467889998765  7888889999999999999  78999999999999999999999999998776


Q ss_pred             EEEEE
Q 021698          281 FFIKW  285 (309)
Q Consensus       281 ~~i~~  285 (309)
                      + ++|
T Consensus       172 ~-~l~  175 (192)
T 1y9q_A          172 V-FQN  175 (192)
T ss_dssp             E-EEE
T ss_pred             E-EEE
Confidence            6 444

>1yhf_A Hypothetical protein SPY1581; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; 2.00A {Streptococcus pyogenes} SCOP: b.82.1.9

Probab=99.34  E-value=1.1e-11  Score=98.28  Aligned_cols=65  Identities=17%  Similarity=0.272  Sum_probs=60.1

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..++++||...++|+|+..|++||++|++++  .++++.+.+++||++++|+|++|++.|.++..++
T Consensus        43 ~~~~~~~g~~~~~H~H~~~e~~~vl~G~~~~--~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~  107 (115)
T 1yhf_A           43 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEI--TIDQETYRVAEGQTIVMPAGIPHALYAVEAFQML  107 (115)
T ss_dssp             EEEEECTTCEEEEECCSSEEEEEEEESEEEE--EETTEEEEEETTCEEEECTTSCEEEEESSCEEEE
T ss_pred             EEEEECCCCccCCEECCCcEEEEEEeCEEEE--EECCEEEEECCCCEEEECCCCCEEEEECCCceEE
Confidence            5678899999999999999999999999999  6899999999999999999999999999876665

>2b8m_A Hypothetical protein MJ0764; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.70A {Methanocaldococcus jannaschii} SCOP: b.82.1.18

Probab=99.33  E-value=1.9e-11  Score=97.54  Aligned_cols=64  Identities=11%  Similarity=0.223  Sum_probs=58.6

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEE-EecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERF-DLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~-~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      ..++++||...++|+|+..|++||++|++++  .++++.+ .|++||++++|+|++|+++|.++..+
T Consensus        30 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~--~i~~~~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~   94 (117)
T 2b8m_A           30 NHIVLPRGEQMPKHYSNSYVHLIIIKGEMTL--TLEDQEPHNYKEGNIVYVPFNVKMLIQNINSDIL   94 (117)
T ss_dssp             EEEEEETTCBCCCEECSSCEEEEEEESEEEE--EETTSCCEEEETTCEEEECTTCEEEEECCSSSEE
T ss_pred             EEEEECCCCcCCCEeCCCcEEEEEEeCEEEE--EECCEEEEEeCCCCEEEECCCCcEEeEcCCCCCE
Confidence            4678899999999999999999999999999  6789999 99999999999999999999987644

>3ht1_A REMF protein; cupin fold, Zn-binding, antibiotic biosynthesis, resistomycin, metalloprotein, cyclase, lyase; 1.20A {Streptomyces resistomycificus} PDB: 3ht2_A

Probab=99.32  E-value=3.4e-12  Score=104.89  Aligned_cols=64  Identities=22%  Similarity=0.438  Sum_probs=58.9

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEE--eCCeEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNL--TKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~--~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      ..++++||+..++|+|+..|++||++|++++  .  ++++.+.+++||++++|+|++|+++|.++..+
T Consensus        42 ~~~~~~pg~~~~~H~H~~~e~~~vl~G~~~~--~~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~  107 (145)
T 3ht1_A           42 TEFEVSPNGSTPPHFHEWEHEIYVLEGSMGL--VLPDQGRTEEVGPGEAIFIPRGEPHGFVTGPGQTC  107 (145)
T ss_dssp             EEEEEEEEEECCCEECSSCEEEEEEEECEEE--EEGGGTEEEEECTTCEEEECTTCCBEEECCTTCCE
T ss_pred             EEEEECCCCcCCCccCCCceEEEEEEeEEEE--EEeECCEEEEECCCCEEEECCCCeEEeEcCCCCCE
Confidence            4678899999999999999999999999999  7  89999999999999999999999999886543

>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative acetylacetone dioxygenase, structural genomics; HET: MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP: b.82.1.21

Probab=99.32  E-value=3.5e-12  Score=107.11  Aligned_cols=102  Identities=23%  Similarity=0.281  Sum_probs=82.8

Q ss_pred             cCCCCceee-----cCCceEEEeeeCCC----eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeE--EEecCC
Q 021698          192 NRELNPVEM-----IPGGSMKIIRESPT----SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER--FDLTVG  260 (309)
Q Consensus       192 ~~~~~~~~~-----~pgg~~~il~~~~~----~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~--~~L~pG  260 (309)
                      ..+.+..+.     .+|...++|..++.    ..+++++||+..|.|+|+..|++|||+|+++.  ..++..  +.+++|
T Consensus        14 ~~~~~W~~~p~~~~~~Gv~~~~L~~~~~~g~~~~~~~~~pG~~~p~H~H~~~ee~~VL~G~~~~--~~g~~~~~~~~~~G   91 (145)
T 2o1q_A           14 MDQVDWKPFPAAFSTGGIRWKLLHVSPEMGSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV--RGGKAAGGDTAIAP   91 (145)
T ss_dssp             GGGSCCEECCGGGEESCCEEEEEEEETTTTEEEEEEEECTTEEECCEEESSCEEEEEEEEEEEE--TTCGGGTSEEEESS
T ss_pred             cccCccEeCCcccCCCCcEEEEeeECCCcccEEEEEEECCCCCCCccCCCCCEEEEEEEeEEEE--cCCCEecceEeCCC
Confidence            334455555     57888888865543    46899999999999999999999999999998  555555  899999


Q ss_pred             cEEEECCCCcEE-EEEcCCeEEEEEEcCCcccccchh
Q 021698          261 DYLFTPAGDVHR-VKYYEETEFFIKWDGRWDMFFDED  296 (309)
Q Consensus       261 d~i~iP~g~~H~-~~n~~d~~~~i~~~g~~~i~~~~~  296 (309)
                      |++++|+|..|. ..+.+++.+++++.+++ .|++++
T Consensus        92 d~~~~p~g~~H~p~~~~e~~~~l~~~~gp~-~f~~~~  127 (145)
T 2o1q_A           92 GYGYESANARHDKTEFPVASEFYMSFLGPL-TFVKPD  127 (145)
T ss_dssp             EEEEECTTCEESCCEEEEEEEEEEEEESCE-EEECTT
T ss_pred             EEEEECcCCccCCeECCCCeEEEEEECCcc-eecCCC
Confidence            999999999999 66677888888999988 466654

>3h8u_A Uncharacterized conserved protein with double-STR beta-helix domain; YP_001338853.1; HET: 2PE; 1.80A {Klebsiella pneumoniae subsp}

Probab=99.32  E-value=1.1e-11  Score=99.79  Aligned_cols=65  Identities=20%  Similarity=0.290  Sum_probs=57.7

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEe-CCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLT-KGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~-~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+++++||...++|+|+. .|++||++|++++  .+ +++.+.|++||++++|+|++|++.|.++..+.
T Consensus        42 ~~~~~~pg~~~~~H~H~~~~e~~~Vl~G~~~~--~~~~~~~~~l~~Gd~~~i~~~~~H~~~n~~~~~~~  108 (125)
T 3h8u_A           42 VVWHAHPGQEIASHVHPHGQDTWTVISGEAEY--HQGNGIVTHLKAGDIAIAKPGQVHGAMNSGPEPFI  108 (125)
T ss_dssp             EEEEECTTCEECCC-CTTCEEEEEEEECEEEE--ECSTTCEEEEETTEEEEECTTCCCEEEECSSSCEE
T ss_pred             EEEEECCCCcCCcccCCCCeEEEEEEEeEEEE--EECCCeEEEeCCCCEEEECCCCEEEeEeCCCCCEE
Confidence            568899999999999996 6778899999999  67 89999999999999999999999999876544

>3ibm_A Cupin 2, conserved barrel domain protein; cupin 2 family, metal-binding site, beta barrel, PSI-2, NYSG structural genomics; 2.00A {Halorhodospira halophila SL1}

Probab=99.32  E-value=2.1e-11  Score=104.50  Aligned_cols=65  Identities=15%  Similarity=0.202  Sum_probs=59.9

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC-CeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~  282 (309)
                      ..++++||+..++|+|+..|++||++|++++  .++++.+.|++||++|||+|++|+++|.+ +..+.
T Consensus        59 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~--~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~~  124 (167)
T 3ibm_A           59 RYFEVEPGGYTTLERHEHTHVVMVVRGHAEV--VLDDRVEPLTPLDCVYIAPHAWHQIHATGANEPLG  124 (167)
T ss_dssp             EEEEECTTCBCCCBBCSSCEEEEEEESEEEE--EETTEEEEECTTCEEEECTTCCEEEEEESSSCCEE
T ss_pred             EEEEECCCCCCCCccCCCcEEEEEEeCEEEE--EECCEEEEECCCCEEEECCCCcEEEEeCCCCCCEE
Confidence            4678999999999999999999999999999  78999999999999999999999999998 65543

>1v70_A Probable antibiotics synthesis protein; structural genomics, thermus thermophilus HB8, riken structu genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} SCOP: b.82.1.9 PDB: 2dct_A

Probab=99.30  E-value=2.2e-11  Score=93.65  Aligned_cols=67  Identities=24%  Similarity=0.270  Sum_probs=59.2

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ..++++||...++|+|+. .|++||++|++++  .++++.+.+++||++++|+|++|++.|.++..+.++
T Consensus        31 ~~~~~~pg~~~~~H~H~~~~e~~~v~~G~~~~--~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~~~~   98 (105)
T 1v70_A           31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVV--RVGEEEALLAPGMAAFAPAGAPHGVRNESASPALLL   98 (105)
T ss_dssp             EEEEECTTCEEEEECCSSCEEEEEEEESCEEE--EETTEEEEECTTCEEEECTTSCEEEECCSSSCEEEE
T ss_pred             EEEEECCCCcCCccCCCCCcEEEEEEeCEEEE--EECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEEEE
Confidence            567899999999999996 6788999999999  689999999999999999999999999886555433

>4i4a_A Similar to unknown protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.35A {Photorhabdus luminescens subsp}

Probab=99.29  E-value=4.8e-11  Score=96.33  Aligned_cols=75  Identities=20%  Similarity=0.359  Sum_probs=63.7

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEcCCcccccch
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRWDMFFDE  295 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~g~~~i~~~~  295 (309)
                      ...+++||...++|+|...|++||++|++++  .++++.+.+++||++++|+|++|++.|.++..+.++     .+++++
T Consensus        37 ~~~~~~pg~~~~~H~H~~~Ei~~v~~G~~~~--~i~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~~-----~i~f~~  109 (128)
T 4i4a_A           37 AWCIVRPETKSFRHSHNEYELFIVIQGNAII--RINDEDFPVTKGDLIIIPLDSEHHVINNNQEDFHFY-----TIWWDK  109 (128)
T ss_dssp             EEEEECTTEECCCBCCSSEEEEEEEESEEEE--EETTEEEEEETTCEEEECTTCCEEEEECSSSCEEEE-----EEEECH
T ss_pred             EEEEECCCCccCCEecCCeEEEEEEeCEEEE--EECCEEEEECCCcEEEECCCCcEEeEeCCCCCEEEE-----EEEECH
Confidence            4678899999999999999999999999999  789999999999999999999999999876544322     355555


Q ss_pred             hH
Q 021698          296 DL  297 (309)
Q Consensus       296 ~~  297 (309)
                      ++
T Consensus       110 ~~  111 (128)
T 4i4a_A          110 ES  111 (128)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2gu9_A Tetracenomycin polyketide synthesis protein; X-RAY diffraction, cupin, immune system; 1.40A {Xanthomonas campestris} PDB: 2ilb_A 3h50_A

Probab=99.29  E-value=1.2e-11  Score=96.88  Aligned_cols=66  Identities=20%  Similarity=0.305  Sum_probs=58.7

Q ss_pred             EEEEEcCCCcCCcc--ccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          216 AIVRFKAGSVEPAH--HHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~v~l~pG~~~p~H--~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      ..++++||...++|  +|+ ..|++||++|++++  .++++.+.|++||++++|+|++|++.|.++..+.+
T Consensus        24 ~~~~~~pg~~~~~h~~~H~~~~e~~~vl~G~~~~--~~~~~~~~l~~Gd~~~i~~~~~H~~~~~~~~~~~~   92 (113)
T 2gu9_A           24 AEMVIAPGDREGGPDNRHRGADQWLFVVDGAGEA--IVDGHTQALQAGSLIAIERGQAHEIRNTGDTPLKT   92 (113)
T ss_dssp             EEEEECTTCEEECCCSSSCCCEEEEEEEECCEEE--EETTEEEEECTTEEEEECTTCCEEEECCSSSCEEE
T ss_pred             EEEEECCCCccCCcccccCCCcEEEEEEeCEEEE--EECCEEEEeCCCCEEEECCCCcEEeEcCCCCCEEE
Confidence            46788999998888  999 78999999999999  68999999999999999999999999988654433

>3kgz_A Cupin 2 conserved barrel domain protein; metalloprotein, structural genomics, PSI-2, protein structur initiative; 1.85A {Rhodopseudomonas palustris}

Probab=99.29  E-value=1.1e-11  Score=105.51  Aligned_cols=65  Identities=17%  Similarity=0.257  Sum_probs=59.6

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..++++||+..++|+|+..|++||++|++++  .++++.+.|++||++|+|+|++|+++|.++..+.
T Consensus        47 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~v--~v~g~~~~l~~Gd~i~ip~~~~H~~~n~g~~~~~  111 (156)
T 3kgz_A           47 RYFEVDEGGYSTLERHAHVHAVMIHRGHGQC--LVGETISDVAQGDLVFIPPMTWHQFRANRGDCLG  111 (156)
T ss_dssp             EEEEEEEEEECCCBBCSSCEEEEEEEEEEEE--EETTEEEEEETTCEEEECTTCCEEEECCSSSCEE
T ss_pred             EEEEECCCCccCceeCCCcEEEEEEeCEEEE--EECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEE
Confidence            4678899999999999999999999999999  7899999999999999999999999999875543

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.27  E-value=2e-11  Score=110.31  Aligned_cols=85  Identities=13%  Similarity=0.026  Sum_probs=69.8

Q ss_pred             eecCCceEEEeeeCCC-eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEE-ECCCCcEEEEEc
Q 021698          199 EMIPGGSMKIIRESPT-SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLF-TPAGDVHRVKYY  276 (309)
Q Consensus       199 ~~~pgg~~~il~~~~~-~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~-iP~g~~H~~~n~  276 (309)
                      ...+|...+++..... ..+++++||...++|+|+..|++||++|++++  .++++.+.|+|||++| +|+|++|+++|.
T Consensus        19 ~~~~Gv~~~~l~~~~~~~~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~--~~~~~~~~l~~Gd~i~~ip~~~~H~~~n~   96 (243)
T 3h7j_A           19 EWENGVRQYSTVRGDTEVLMSYVPPHTNVEPHQHKEVQIGMVVSGELMM--TVGDVTRKMTALESAYIAPPHVPHGARND   96 (243)
T ss_dssp             ECTTSCEEEEEEETTEEEEEEEECTTEEEEEECCSSEEEEEEEESEEEE--EETTEEEEEETTTCEEEECTTCCEEEEEC
T ss_pred             ccCCCeEEEEEECCCCEEEEEEECCCCccCCEECCCcEEEEEEEeEEEE--EECCEEEEECCCCEEEEcCCCCcEeeEeC
Confidence            3445666666544433 25667999999999999999999999999999  6899999999999998 999999999999


Q ss_pred             CCeEEEEEE
Q 021698          277 EETEFFIKW  285 (309)
Q Consensus       277 ~d~~~~i~~  285 (309)
                      ++..+++++
T Consensus        97 ~~~~~~~l~  105 (243)
T 3h7j_A           97 TDQEVIAID  105 (243)
T ss_dssp             SSSCEEEEE
T ss_pred             CCCcEEEEE
Confidence            986655443

>3jzv_A Uncharacterized protein RRU_A2000; structural genomics, cupin-2 fold, unknown function, PSI-2, structure initiative; HET: MSE; 2.30A {Rhodospirillum rubrum}

Probab=99.27  E-value=1.3e-11  Score=106.00  Aligned_cols=65  Identities=12%  Similarity=0.198  Sum_probs=59.7

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+++++||+..++|+|+..|++||++|++++  .++++.+.|++||++++|+|++|++.|.++..+.
T Consensus        56 ~~~~l~pG~~~~~H~H~~~E~~~Vl~G~~~~--~v~g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~  120 (166)
T 3jzv_A           56 RYFEVGPGGHSTLERHQHAHGVMILKGRGHA--MVGRAVSAVAPYDLVTIPGWSWHQFRAPADEALG  120 (166)
T ss_dssp             EEEEEEEEEECCCBBCSSCEEEEEEEECEEE--EETTEEEEECTTCEEEECTTCCEEEECCTTSCEE
T ss_pred             EEEEECCCCccCceeCCCcEEEEEEeCEEEE--EECCEEEEeCCCCEEEECCCCcEEeEeCCCCCEE
Confidence            4678899999999999999999999999999  7899999999999999999999999998876543

>2ozj_A Cupin 2, conserved barrel; cupin superfamily protein, struct genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Desulfitobacterium hafniense}

Probab=99.27  E-value=2.4e-11  Score=96.41  Aligned_cols=65  Identities=17%  Similarity=0.287  Sum_probs=58.6

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .++.+++|...+.|+|+..|++||++|++++  .++++.+.|++||++++|+|++|+++|.++..++
T Consensus        41 ~~~~~~~g~~~~~H~h~~~e~~~vl~G~~~~--~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~~~  105 (114)
T 2ozj_A           41 SLFSFADGESVSEEEYFGDTLYLILQGEAVI--TFDDQKIDLVPEDVLMVPAHKIHAIAGKGRFKML  105 (114)
T ss_dssp             EEEEEETTSSCCCBCCSSCEEEEEEEEEEEE--EETTEEEEECTTCEEEECTTCCBEEEEEEEEEEE
T ss_pred             EEEEECCCCccccEECCCCeEEEEEeCEEEE--EECCEEEEecCCCEEEECCCCcEEEEeCCCcEEE
Confidence            4567889999999999999999999999999  7899999999999999999999999998665554

>1lr5_A Auxin binding protein 1; beta jellyroll, double stranded beta helix, germin-like PROT protein binding; HET: NAG BMA MAN; 1.90A {Zea mays} SCOP: b.82.1.2 PDB: 1lrh_A*

Probab=99.25  E-value=5.6e-11  Score=100.60  Aligned_cols=89  Identities=18%  Similarity=0.268  Sum_probs=68.5

Q ss_pred             ecCCCCceee-cCCceEEEeeeC-----CC--eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC---------e
Q 021698          191 KNRELNPVEM-IPGGSMKIIRES-----PT--SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG---------E  253 (309)
Q Consensus       191 ~~~~~~~~~~-~pgg~~~il~~~-----~~--~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~---------~  253 (309)
                      +.++.++... .+|...+.+...     ..  ...++++||...++|+|+..|++||++|++++  .+++         +
T Consensus        11 ~~~~~~~~~~~~~G~~~~~l~~~~~~g~~~~~~~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~--~~~~~~~~~~~~~~   88 (163)
T 1lr5_A           11 DISQMPQSSYGIEGLSHITVAGALNHGMKEVEVWLQTISPGQRTPIHRHSCEEVFTVLKGKGTL--LMGSSSLKYPGQPQ   88 (163)
T ss_dssp             EGGGSCCBCTTCTTEEEEEEECHHHHCCSSEEEEEEEECTTCBCCEEEESSCEEEEEEECCEEE--EECCSSSSSCCSCE
T ss_pred             ChHHCChhhccCCCcceEEEeccccCCCCcEEEEEEEECCCCcCCCeECCCCeEEEEEeCEEEE--EECCccccccCccE
Confidence            4444444443 455555544221     11  24678999999999999999999999999999  6777         8


Q ss_pred             EEEecCCcEEEECCCCcEEEEEcC-CeEE
Q 021698          254 RFDLTVGDYLFTPAGDVHRVKYYE-ETEF  281 (309)
Q Consensus       254 ~~~L~pGd~i~iP~g~~H~~~n~~-d~~~  281 (309)
                      .+.|++||++++|+|++|+++|.+ +..+
T Consensus        89 ~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~  117 (163)
T 1lr5_A           89 EIPFFQNTTFSIPVNDPHQVWNSDEHEDL  117 (163)
T ss_dssp             EEEECTTEEEEECTTCCEEEECCCSSSCE
T ss_pred             EEEeCCCCEEEECCCCcEEeEeCCCCCCE
Confidence            999999999999999999999988 5443

>2q30_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.94A {Desulfovibrio desulfuricans subsp}

Probab=99.25  E-value=8.7e-11  Score=91.78  Aligned_cols=68  Identities=26%  Similarity=0.430  Sum_probs=59.8

Q ss_pred             EEEEEcCCCcCCccccCc-cEE-EEEEeCEEEEEEEeC-CeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHD-LVVLEGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~-vyVl~G~l~v~~~~~-~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~  285 (309)
                      ..+++++|...++|+|+. .|+ +||++|++++  .++ ++.+.|++||++++|+|++|++.|.++..++++.
T Consensus        36 ~~~~~~~g~~~~~H~H~~~~e~~~~vl~G~~~~--~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l~~~  106 (110)
T 2q30_A           36 VSFTFKAGQELPVHSHNIEGELNIVVLEGEGEF--VGDGDAVIPAPRGAVLVAPISTPHGVRAVTDMKVLVTI  106 (110)
T ss_dssp             EEEEECTTCEEEEECCSSSCEEEEEEEESCEEE--ECGGGCEEEECTTEEEEEETTSCEEEEESSSEEEEEEE
T ss_pred             EEEEECCCCcCCcccCCCCccEEEEEEeCEEEE--EeCCCEEEEECCCCEEEeCCCCcEEEEEcCCcEEEEEE
Confidence            567889999999999996 687 7999999999  677 6999999999999999999999999887765443

>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase, iron, metal-binding, oxidoreductase; 1.95A {Acinetobacter johnsonii}

Probab=99.23  E-value=3.2e-11  Score=102.35  Aligned_cols=106  Identities=25%  Similarity=0.320  Sum_probs=87.0

Q ss_pred             eeeecCCCCceee-----cCCceEEEeeeCCC----eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--eEEE
Q 021698          188 CLVKNRELNPVEM-----IPGGSMKIIRESPT----SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--ERFD  256 (309)
Q Consensus       188 ~l~~~~~~~~~~~-----~pgg~~~il~~~~~----~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~~~~  256 (309)
                      .+++..+...++.     .+|..+++|+.++.    ..+++++||+..+.|+|+..+++|||+|++..  ..++  ..+.
T Consensus        12 ~~v~~d~~~W~p~P~~l~~~Gv~~k~L~~~~e~g~~t~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~--~~Gd~~~~~~   89 (153)
T 3bal_A           12 EYVKISDNNYVPFPEAFSDGGITWQLLHSSPETSSWTAIFNCPAGSSFASHIHAGPGEYFLTKGKMEV--RGGEQEGGST   89 (153)
T ss_dssp             EEEECCGGGCEECCGGGEESCCEEEEEEEETTTTEEEEEEEECTTEEECCEEESSCEEEEEEESEEEE--TTCGGGTSEE
T ss_pred             eEEccccCceecCCCccCCCCeEEEEEEECCccceEEEEEEeCCCCCccCccCCCCEEEEEEEEEEEe--cCccccCccc
Confidence            3667777788777     67889999887765    37899999999999999999999999999988  4433  3588


Q ss_pred             ecCCcEEEECCCCcEEE-EEcCCeEEEEEEcCCcccccchh
Q 021698          257 LTVGDYLFTPAGDVHRV-KYYEETEFFIKWDGRWDMFFDED  296 (309)
Q Consensus       257 L~pGd~i~iP~g~~H~~-~n~~d~~~~i~~~g~~~i~~~~~  296 (309)
                      +.+|++++.|+|..|.. ...++++++++..|++ .|++++
T Consensus        90 ~~aGsYv~ePpGs~H~p~~~~~~~~~~~~~~Gp~-~y~d~~  129 (153)
T 3bal_A           90 AYAPSYGFESSGALHGKTFFPVESQFYMTFLGPL-NFIDDN  129 (153)
T ss_dssp             EESSEEEEECTTCEESCCEESSCEEEEEEEESCE-EEECTT
T ss_pred             cCCCeEEEcCCCCcccceeCCCCeEEEEEEECCe-EEECCC
Confidence            89999999999999984 4456778888888886 677754

>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}

Probab=99.22  E-value=3.5e-11  Score=102.78  Aligned_cols=103  Identities=17%  Similarity=0.194  Sum_probs=81.3

Q ss_pred             eeecCCCCcee---ecCCceEEEeeeCC----CeEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCc
Q 021698          189 LVKNRELNPVE---MIPGGSMKIIRESP----TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGD  261 (309)
Q Consensus       189 l~~~~~~~~~~---~~pgg~~~il~~~~----~~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd  261 (309)
                      ++...+..+.+   ..+|..++.|..++    ...+++++||+..|.|+|+..|++|||+|++++  .  +..+.+++||
T Consensus        11 ~v~~~~~~W~~~~~~~~Gv~~~~L~~d~~~g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~~~~--~--e~~~~~~~Gd   86 (159)
T 3ebr_A           11 CLDGNDTPWMPFAPYSNDVMVKYFKIDPVRGETITLLKAPAGMEMPRHHHTGTVIVYTVQGSWRY--K--EHDWVAHAGS   86 (159)
T ss_dssp             CCCGGGSCCEECTTTCSSSEEEEEEEETTTTEEEEEEEECSSCBCCCEEESSCEEEEEEESCEEE--T--TSSCCBCTTC
T ss_pred             EEcCCcCCcEeCCCCCCCEEEEEeeEcCCCCeEEEEEEECCCCCcccccCCCCEEEEEEEeEEEE--e--CCCeEECCCe
Confidence            34555566666   46788888875442    247899999999999999999999999999987  2  2336899999


Q ss_pred             EEEECCCCcEEEEEc----CCeEEEEEEcCCcccccchh
Q 021698          262 YLFTPAGDVHRVKYY----EETEFFIKWDGRWDMFFDED  296 (309)
Q Consensus       262 ~i~iP~g~~H~~~n~----~d~~~~i~~~g~~~i~~~~~  296 (309)
                      +++.|+|..|...+.    +++.+++++.|++. |++++
T Consensus        87 ~~~~P~g~~H~~~~~~~~~e~~~~~~~~~G~l~-~~~~~  124 (159)
T 3ebr_A           87 VVYETASTRHTPQSAYAEGPDIITFNIVAGELL-YLDDK  124 (159)
T ss_dssp             EEEECSSEEECEEESSSSSSCEEEEEEEESCEE-EECTT
T ss_pred             EEEECCCCcceeEeCCCCCCCEEEEEEecCccE-ecCCC
Confidence            999999999999998    45777888899874 66544

>3l2h_A Putative sugar phosphate isomerase; AFE_0303, structural GEN joint center for structural genomics, JCSG; HET: MSE CXS; 1.85A {Acidithiobacillus ferrooxidans}

Probab=99.22  E-value=5.1e-11  Score=100.67  Aligned_cols=68  Identities=16%  Similarity=0.306  Sum_probs=59.5

Q ss_pred             EEEEEcCCCc-CCcccc-CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCC-CcEEEEEcCCeEEEEEE
Q 021698          216 AIVRFKAGSV-EPAHHH-TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAG-DVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~v~l~pG~~-~p~H~H-~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g-~~H~~~n~~d~~~~i~~  285 (309)
                      ..++++||.. .++|+| ...|++||++|++++  .++++.+.|++||++++|+| ++|++.|.++..+.+++
T Consensus        49 ~~~~l~pg~~~~~~H~H~~~~E~~~Vl~G~~~~--~~~~~~~~l~~Gd~i~i~~~~~~H~~~n~~~~~~~~l~  119 (162)
T 3l2h_A           49 HLIQIEPGKESTEYHLHHYEEEAVYVLSGKGTL--TMENDQYPIAPGDFVGFPCHAAAHSISNDGTETLVCLV  119 (162)
T ss_dssp             EEEEECTTCBSSSSBEESSCCEEEEEEESCEEE--EETTEEEEECTTCEEEECTTSCCEEEECCSSSCEEEEE
T ss_pred             EEEEECCCCcCCCCccCCCCCEEEEEEEEEEEE--EECCEEEEeCCCCEEEECCCCceEEeEeCCCCCEEEEE
Confidence            4688999994 899999 678999999999999  78999999999999999998 99999998876554433

>3es1_A Cupin 2, conserved barrel domain protein; YP_001165807.1; HET: MSE; 1.91A {Novosphingobium aromaticivorans dsm 12ORGANISM_TAXID}

Probab=99.21  E-value=3.1e-11  Score=104.46  Aligned_cols=68  Identities=19%  Similarity=0.242  Sum_probs=60.5

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-CeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      .+++++||+..++|.|..+|++|||+|++++  .++ ++++.|++||++ +|++++|+++|.+++.+.++|.
T Consensus        82 ~~v~l~PG~~~~~H~H~~eE~~~VLeGel~l--~ld~ge~~~L~~GDsi-~~~g~~H~~~N~g~~~ar~l~V  150 (172)
T 3es1_A           82 RVVDMLPGKESPMHRTNSIDYGIVLEGEIEL--ELDDGAKRTVRQGGII-VQRGTNHLWRNTTDKPCRIAFI  150 (172)
T ss_dssp             EEEEECTTCBCCCBCCSEEEEEEEEESCEEE--ECGGGCEEEECTTCEE-EECSCCBEEECCSSSCEEEEEE
T ss_pred             EEEEECCCCCCCCeecCceEEEEEEeCEEEE--EECCCeEEEECCCCEE-EeCCCcEEEEeCCCCCEEEEEE
Confidence            4678999999999999999999999999999  677 789999999999 9999999999999776655443

>1o4t_A Putative oxalate decarboxylase; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; 1.95A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.20  E-value=4.8e-11  Score=97.99  Aligned_cols=68  Identities=22%  Similarity=0.292  Sum_probs=60.8

Q ss_pred             EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~  285 (309)
                      ..++++||...++|+|+ ..|++||++|++++  .++++.+.|++||++++|++++|++.|.++..+.++|
T Consensus        60 ~~~~~~pg~~~~~H~H~~~~E~~~Vl~G~~~~--~i~~~~~~l~~Gd~i~i~~~~~H~~~n~~~~~~~~l~  128 (133)
T 1o4t_A           60 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVF--HDNGKDVPIKAGDVCFTDSGESHSIENTGNTDLEFLA  128 (133)
T ss_dssp             EEEEECTTCEEEEEECCSEEEEEEEEESEEEE--EETTEEEEEETTEEEEECTTCEEEEECCSSSCEEEEE
T ss_pred             EEEEECCCCccCceECCCccEEEEEEeCEEEE--EECCEEEEeCCCcEEEECCCCcEEeEECCCCCEEEEE
Confidence            45789999999999998 58999999999999  7899999999999999999999999999876665544

>3h7j_A Bacilysin biosynthesis protein BACB; YWFC, bacilysin synthesis, anticapsin synthesis, BI-Cu double stranded beta helix, antibiotic biosynthesis; HET: PPY; 1.87A {Bacillus subtilis} PDB: 3h7y_A* 3h9a_A*

Probab=99.20  E-value=1.1e-10  Score=105.51  Aligned_cols=65  Identities=17%  Similarity=0.238  Sum_probs=59.1

Q ss_pred             EEEEEcC-CCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKA-GSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~p-G~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+++++| |...++|+|+.+|++||++|++++  .++++++.|++||++|+|++++|+++|.++..+.
T Consensus       148 ~~~~~~p~g~~~~~H~H~~~e~~~Vl~G~~~~--~i~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~  213 (243)
T 3h7j_A          148 MLAKIPGNGGEMPFHKHRNEQIGICIGGGYDM--TVEGCTVEMKFGTAYFCEPREDHGAINRSEKESK  213 (243)
T ss_dssp             EEEEECTTTEEEEEECCSSEEEEEECSSCEEE--EETTEEEEECTTCEEEECTTCCEEEEECSSSCEE
T ss_pred             EEEEECCCCCcCCCEeCCCcEEEEEEECEEEE--EECCEEEEECCCCEEEECCCCcEEeEeCCCCCEE
Confidence            4678999 888899999999999999999999  7899999999999999999999999999865443

>1vj2_A Novel manganese-containing cupin TM1459; structural genomics, joint for structural genomics, JCSG; 1.65A {Thermotoga maritima} SCOP: b.82.1.10

Probab=99.19  E-value=4.5e-11  Score=97.11  Aligned_cols=66  Identities=23%  Similarity=0.456  Sum_probs=59.5

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      ..++++||...++|+|+..|++||++|++++  .++++.+.+++||++++|+|++|++.|.++..+.+
T Consensus        51 ~~~~~~pg~~~~~H~H~~~e~~~Vl~G~~~~--~i~~~~~~l~~Gd~i~ip~g~~H~~~~~~~~~~~~  116 (126)
T 1vj2_A           51 RLFTVEPGGLIDRHSHPWEHEIFVLKGKLTV--LKEQGEETVEEGFYIFVEPNEIHGFRNDTDSEVEF  116 (126)
T ss_dssp             EEEEEEEEEEEEEECCSSCEEEEEEESEEEE--ECSSCEEEEETTEEEEECTTCCEEEECCSSSCEEE
T ss_pred             EEEEECCCCcCCceeCCCcEEEEEEEeEEEE--EECCEEEEECCCCEEEECCCCcEEeEeCCCCCEEE
Confidence            5678899998999999999999999999999  78999999999999999999999999988655443

>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}

Probab=99.19  E-value=6.5e-11  Score=101.85  Aligned_cols=69  Identities=14%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             EEEEEcC-CCcC-CccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKA-GSVE-PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~p-G~~~-p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      .+++++| |+.. +.|.|..++++|||+|++++  .++++.+.|.+||++|+|++.+|+++|.++.++.++|.
T Consensus        91 ~~v~lpP~G~~~~~~~~h~gEE~~yVLeG~v~v--tl~g~~~~L~~Gds~~iP~g~~H~~~N~~d~~Arll~V  161 (166)
T 2vpv_A           91 GILKLPAISGQKKLSNSFRTYITFHVIQGIVEV--TVCKNKFLSVKGSTFQIPAFNEYAIANRGNDEAKMFFV  161 (166)
T ss_dssp             EEEEECSSGGGCEEEECCSEEEEEEEEESEEEE--EETTEEEEEETTCEEEECTTCEEEEEECSSSCEEEEEE
T ss_pred             EEEEECCCCCCCCCccCCCceEEEEEEEeEEEE--EECCEEEEEcCCCEEEECCCCCEEEEECCCCCEEEEEE
Confidence            5789999 7654 45677888899999999999  78999999999999999999999999999988877775

>2o8q_A Hypothetical protein; cpuin-like fold, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Burkholderia xenovorans}

Probab=99.19  E-value=5.4e-11  Score=97.04  Aligned_cols=77  Identities=21%  Similarity=0.186  Sum_probs=57.1

Q ss_pred             EEEE--cCCCcCCccccCc-cEEEEEEeCEEEEEEEeCC-eEEEecCCcEEEECCCCcEEEEEcCC-eEEE-EEEcCCcc
Q 021698          217 IVRF--KAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKG-ERFDLTVGDYLFTPAGDVHRVKYYEE-TEFF-IKWDGRWD  290 (309)
Q Consensus       217 ~v~l--~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~-~~~~L~pGd~i~iP~g~~H~~~n~~d-~~~~-i~~~g~~~  290 (309)
                      ++++  +||...++|+|+. .|++||++|++++  .+++ +.+.|++||++++|+|++|++.|.++ ..++ +.....+.
T Consensus        45 ~~~~~~~~g~~~~~H~H~~~~E~~~vl~G~~~~--~~~~~~~~~l~~Gd~~~ip~g~~H~~~~~~~~~~~l~~~~p~~~~  122 (134)
T 2o8q_A           45 VIRAIPGKEAKPTWHTHTVGFQLFYVLRGWVEF--EYEDIGAVMLEAGGSAFQPPGVRHRELRHSDDLEVLEIVSPAGFA  122 (134)
T ss_dssp             EEEECC-----CCCEEECCSCEEEEEEESEEEE--EETTTEEEEEETTCEEECCTTCCEEEEEECTTCEEEEEESSTTCC
T ss_pred             EEEEecCCCCCCCCEECCCCcEEEEEEeCEEEE--EECCcEEEEecCCCEEEECCCCcEEeEeCCCCeEEEEEECCCchh
Confidence            4444  4788889999998 8999999999999  6788 99999999999999999999999764 3444 34444455


Q ss_pred             cccch
Q 021698          291 MFFDE  295 (309)
Q Consensus       291 i~~~~  295 (309)
                      -++.+
T Consensus       123 ~~~~~  127 (134)
T 2o8q_A          123 TSVVD  127 (134)
T ss_dssp             EEECC
T ss_pred             eeehh
Confidence            44433

>2oa2_A BH2720 protein; 10175341, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative, PSI-2, unknow function; HET: MSE; 1.41A {Bacillus halodurans}

Probab=99.17  E-value=9.5e-11  Score=97.85  Aligned_cols=64  Identities=19%  Similarity=0.205  Sum_probs=56.9

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCCeE------EEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKGER------FDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~~~------~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      ..++++||...++|+|+. .|++||++|++++  .++++.      +.|++||++++|+|++|+++|.++..+
T Consensus        46 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~--~i~~~~~~~~~~~~l~~Gd~i~ip~g~~H~~~n~~~~~~  116 (148)
T 2oa2_A           46 TLMSIQVGEDIGLEIHPHLDQFLRVEEGRGLV--QMGHRQDNLHFQEEVFDDYAILIPAGTWHNVRNTGNRPL  116 (148)
T ss_dssp             EEEEECTTCBCCCBCCTTCEEEEEEEESEEEE--EEESBTTBCCEEEEEETTCEEEECTTCEEEEEECSSSCE
T ss_pred             EEEEECCCCccCceECCCCcEEEEEEeCEEEE--EECCccccceeeEEECCCCEEEECCCCcEEEEECCCCCE
Confidence            467899999999999985 4889999999999  677887      999999999999999999999986544

>3i7d_A Sugar phosphate isomerase; YP_168127.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.30A {Ruegeria pomeroyi dss-3}

Probab=99.17  E-value=1.1e-10  Score=99.60  Aligned_cols=66  Identities=21%  Similarity=0.286  Sum_probs=58.9

Q ss_pred             EEEEEcCCCcC-CccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCC--CcEEEEEcCCeEEEE
Q 021698          216 AIVRFKAGSVE-PAHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~v~l~pG~~~-p~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g--~~H~~~n~~d~~~~i  283 (309)
                      .+++++||+.. ++|+|+. +|++||++|++++  .++++.+.|++||++++|+|  ++|+++|.++..+.+
T Consensus        46 ~~~~l~pG~~~~~~H~H~~~eE~~~Vl~G~~~~--~~~~~~~~l~~GD~i~ip~~~~~~H~~~n~~~~~~~~  115 (163)
T 3i7d_A           46 NLVRLEPGAKSSLRHYHMEQDEFVMVTEGALVL--VDDQGEHPMVPGDCAAFPAGDPNGHQFVNRTDAPATF  115 (163)
T ss_dssp             EEEEECTTCBSSSSEEESSCCEEEEEEESCEEE--EETTEEEEECTTCEEEECTTCCCCBEEECCSSSCEEE
T ss_pred             EEEEECCCCcCCCCccCCCCcEEEEEEECEEEE--EECCEEEEeCCCCEEEECCCCCcceEEEECCCCCEEE
Confidence            57889999976 7999998 5999999999999  78999999999999999999  999999988765443

>4h7l_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, cupin, unknown function; 2.45A {Planctomyces limnophilus}

Probab=99.16  E-value=2.6e-10  Score=97.11  Aligned_cols=97  Identities=15%  Similarity=0.124  Sum_probs=76.9

Q ss_pred             eeeecCCCCceeecCCceEEEeeeCCC--eEEEEEcCCCcCCccccCc-cEEEEEEe--CEEEEEEEeCCeEEEecCCcE
Q 021698          188 CLVKNRELNPVEMIPGGSMKIIRESPT--SAIVRFKAGSVEPAHHHTF-GHDLVVLE--GKKSVWNLTKGERFDLTVGDY  262 (309)
Q Consensus       188 ~l~~~~~~~~~~~~pgg~~~il~~~~~--~~~v~l~pG~~~p~H~H~~-~e~vyVl~--G~l~v~~~~~~~~~~L~pGd~  262 (309)
                      .++.-.+.++.+..+|...+++.....  ..+..+.++...++|+|+. .|++|||+  |++++  .++++.+.|++||+
T Consensus        18 ~iv~~~ei~~~~~~~G~srR~l~~~~~fp~sv~~v~~g~~~~~H~H~~~~E~~yVLe~~G~g~v--~idge~~~l~~GD~   95 (157)
T 4h7l_A           18 QMISLSEIEAVACPCGWAQRAFGHDAGTSVSVHYTQITKAARTHYHREHQEIYVVLDHAAHATI--ELNGQSYPLTKLLA   95 (157)
T ss_dssp             EEEETTTSCCEEETTEEEEEESCGGGCCSCEEEEEEECSCCCCBBCSSCEEEEEEEEECTTCEE--EETTEEEECCTTEE
T ss_pred             eEEEhhhCCCccCCCCeeeEEeEcCCCCcEEEEEEeCCCCccceECCCCcEEEEEEecCcEEEE--EECCEEEEeCCCCE
Confidence            577778888888888888887765543  2344456677788999975 58889999  99999  68999999999999


Q ss_pred             EEECCCCcEEEEEcCCeEEEEEEcCC
Q 021698          263 LFTPAGDVHRVKYYEETEFFIKWDGR  288 (309)
Q Consensus       263 i~iP~g~~H~~~n~~d~~~~i~~~g~  288 (309)
                      ++||+|+.|++.  ++..++.+..++
T Consensus        96 v~IPpg~~H~i~--g~l~~L~I~~Pp  119 (157)
T 4h7l_A           96 ISIPPLVRHRIV--GEATIINIVSPP  119 (157)
T ss_dssp             EEECTTCCEEEE--SCEEEEEEEESS
T ss_pred             EEECCCCeEeeE--CCEEEEEEECCC
Confidence            999999999997  466666655554

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.15  E-value=2.8e-10  Score=101.91  Aligned_cols=71  Identities=8%  Similarity=0.104  Sum_probs=64.6

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEcCC
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGR  288 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~g~  288 (309)
                      .++.+.+|...+.|.|+.++++||++|++++  .++++++.|++||++++|+|++|++++.++..++.++...
T Consensus        40 ~~~~~~~G~~~~~h~h~~~~~~~Vl~G~~~~--~i~~~~~~l~~Gd~~~~p~~~~H~~~a~~~~~~l~i~~~~  110 (227)
T 3rns_A           40 SLFSLAKDEEITAEAMLGNRYYYCFNGNGEI--FIENNKKTISNGDFLEITANHNYSIEARDNLKLIEIGEKI  110 (227)
T ss_dssp             EEEEECTTCEEEECSCSSCEEEEEEESEEEE--EESSCEEEEETTEEEEECSSCCEEEEESSSEEEEEEEECC
T ss_pred             EEEEECCCCccCccccCCCEEEEEEeCEEEE--EECCEEEEECCCCEEEECCCCCEEEEECCCcEEEEEEeec
Confidence            6789999999999999999999999999999  7899999999999999999999999999888776554443

>3cew_A Uncharacterized cupin protein; all beta-protein, jelly-roll (cupin-2), structural genomics, protein structure initiative; 2.31A {Bacteroides fragilis}

Probab=99.14  E-value=2.4e-10  Score=92.20  Aligned_cols=63  Identities=24%  Similarity=0.462  Sum_probs=56.5

Q ss_pred             EEEEEcCCCcCC-ccccCccEEEE-EEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          216 AIVRFKAGSVEP-AHHHTFGHDLV-VLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~v~l~pG~~~p-~H~H~~~e~vy-Vl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      .+++++||...+ +|+|+..+++| |++|++++  .++++.+.+++||++++|+|++|++.|.++..
T Consensus        29 ~~~~~~pg~~~~~~H~H~~~e~~~~vl~G~~~~--~i~~~~~~l~~Gd~i~i~~~~~H~~~~~~~~~   93 (125)
T 3cew_A           29 SINHLPAGAGVPFVHSHKQNEEIYGILSGKGFI--TIDGEKIELQAGDWLRIAPDGKRQISAASDSP   93 (125)
T ss_dssp             EEEEECTTCBCSSEEEESSEEEEEEEEEEEEEE--EETTEEEEEETTEEEEECTTCCEEEEEBTTBC
T ss_pred             EEEEECCCCCCCCCccCCCceEEEEEEeCEEEE--EECCEEEEeCCCCEEEECCCCcEEEEcCCCCC
Confidence            567889999888 89999887766 99999999  78999999999999999999999999987543

>3cjx_A Protein of unknown function with A cupin-like FOL; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.60A {Ralstonia eutropha}

Probab=99.14  E-value=1.6e-10  Score=99.26  Aligned_cols=103  Identities=21%  Similarity=0.261  Sum_probs=77.2

Q ss_pred             eecCCCCceeec---CCceEEEeeeCCC----eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcE
Q 021698          190 VKNRELNPVEMI---PGGSMKIIRESPT----SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDY  262 (309)
Q Consensus       190 ~~~~~~~~~~~~---pgg~~~il~~~~~----~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~  262 (309)
                      +...+.++....   +|..++.|..++.    ..+++++||+..|.|+|+..|++|||+|+++.  . ++..+.+++||+
T Consensus        13 v~~~~~~W~~~~~~~~GV~~~~L~~~~~~g~~v~lvr~~pG~~~p~H~H~g~ee~~VL~G~f~~--~-~~~~~~~~aGd~   89 (165)
T 3cjx_A           13 VDTTAHPFLKALGGHEGTDIFPLFMDPYNGLMVMRASFAPGLTLPLHFHTGTVHMYTISGCWYY--T-EYPGQKQTAGCY   89 (165)
T ss_dssp             EETTSSCCBCSGGGCTTEEEEEEEEETTTTEEEEEEEECTTCBCCEEEESSCEEEEEEESEEEE--T-TCTTSCEETTEE
T ss_pred             EccccCCcEECCCCCCCEEEEEeEeCCCCCcEEEEEEECCCCcCCcccCCCCEEEEEEEEEEEE--C-CCceEEECCCeE
Confidence            344555555543   3777777754432    47899999999999999999999999999987  2 322578899999


Q ss_pred             EEECCCCcEEEEEcC----CeEEEEEEcCCcccccchh
Q 021698          263 LFTPAGDVHRVKYYE----ETEFFIKWDGRWDMFFDED  296 (309)
Q Consensus       263 i~iP~g~~H~~~n~~----d~~~~i~~~g~~~i~~~~~  296 (309)
                      ++.|+|..|...+..    ++.++++..|++. |++++
T Consensus        90 ~~~P~g~~H~~~a~~~~~~gci~l~v~~GpL~-~~~~~  126 (165)
T 3cjx_A           90 LYEPGGSIHQFNTPRDNEGQTEVIFMLSGCNV-NFTQD  126 (165)
T ss_dssp             EEECTTCEECEECCTTCSSCEEEEEEEESCEE-EECTT
T ss_pred             EEeCCCCceeeEeCCCCCCCcEEEEEEeccce-ecCCC
Confidence            999999999999876    4546666677754 45543

>2f4p_A Hypothetical protein TM1010; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: UNL; 1.90A {Thermotoga maritima} SCOP: b.82.1.9

Probab=99.13  E-value=1.8e-10  Score=96.42  Aligned_cols=65  Identities=28%  Similarity=0.280  Sum_probs=59.0

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeE-EEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER-FDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~-~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..++++||...++|+|+..|++||++|++++  .++++. +.|++||++++|++++|++.|.++..+.
T Consensus        51 ~~~~~~pg~~~~~H~H~~~E~~~Vl~G~~~~--~~~~~~~~~l~~Gd~i~ip~~~~H~~~n~~~~~~~  116 (147)
T 2f4p_A           51 YDVVFEPGARTHWHSHPGGQILIVTRGKGFY--QERGKPARILKKGDVVEIPPNVVHWHGAAPDEELV  116 (147)
T ss_dssp             EEEEECTTCEECSEECTTCEEEEEEEEEEEE--EETTSCCEEEETTCEEEECTTCCEEEEEBTTBCEE
T ss_pred             EEEEECCCCccCceECCCceEEEEEeCEEEE--EECCEEEEEECCCCEEEECCCCcEEeEeCCCCCEE
Confidence            4678999999999999999999999999999  678887 9999999999999999999999866543

>3rns_A Cupin 2 conserved barrel domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 2.07A {Leptotrichia buccalis}

Probab=99.13  E-value=2.4e-10  Score=102.27  Aligned_cols=67  Identities=22%  Similarity=0.298  Sum_probs=61.6

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEE-cCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY-YEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n-~~d~~~~i~  284 (309)
                      .+++++||...++|+|+..+++||++|++++  .++++++.+++||++|+|+|++|+++| .++..++++
T Consensus       156 ~~~~~~~G~~~~~H~H~~~e~~~Vl~G~~~~--~i~g~~~~l~~Gd~i~ip~~~~H~~~~~~~~~~~ll~  223 (227)
T 3rns_A          156 TIMSFWKGESLDPHKAPGDALVTVLDGEGKY--YVDGKPFIVKKGESAVLPANIPHAVEAETENFKMLLI  223 (227)
T ss_dssp             EEEEECTTCEEEEECCSSEEEEEEEEEEEEE--EETTEEEEEETTEEEEECTTSCEEEECCSSCEEEEEE
T ss_pred             EEEEECCCCccCCEECCCcEEEEEEeEEEEE--EECCEEEEECCCCEEEECCCCcEEEEeCCCCEEEEEE
Confidence            5788999999999999999999999999999  789999999999999999999999999 887776644

>2i45_A Hypothetical protein; neisseria meningitidis cupin domain, structural genomics, PS protein structure initiative; 2.50A {Neisseria meningitidis}

Probab=99.11  E-value=1.1e-10  Score=91.56  Aligned_cols=62  Identities=18%  Similarity=0.210  Sum_probs=51.2

Q ss_pred             EEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCC-eEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          217 IVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKG-ERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~-~~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      .+.+.+|. .++|+|+. .|++||++|++++  .+++ +.+.|++||++++|+|++|++.|.++..+
T Consensus        32 ~~~~~~g~-~~~H~H~~~~E~~~Vl~G~~~~--~~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~   95 (107)
T 2i45_A           32 HLVKLLGD-YGWHTHGYSDKVLFAVEGDMAV--DFADGGSMTIREGEMAVVPKSVSHRPRSENGCSL   95 (107)
T ss_dssp             EEEEEEEE-CCCBCC--CCEEEEESSSCEEE--EETTSCEEEECTTEEEEECTTCCEEEEEEEEEEE
T ss_pred             EEEECCCC-CcceeCCCCCEEEEEEeCEEEE--EECCCcEEEECCCCEEEECCCCcEeeEeCCCeEE
Confidence            45566775 46999998 8999999999999  6788 99999999999999999999999654443

>3lwc_A Uncharacterized protein; structural genomics, unknown function, joint center for STRU genomics, JCSG, protein structure initiative; HET: MSE; 1.40A {Rhizobium leguminosarum}

Probab=99.11  E-value=2.8e-10  Score=92.36  Aligned_cols=59  Identities=25%  Similarity=0.437  Sum_probs=53.8

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~  277 (309)
                      .+++++||...++|. +.+|++|||+|++++  .++++++.|++||+++||+|++|++.|.+
T Consensus        43 ~~~~~~pG~~~~~H~-~~~E~~~Vl~G~~~~--~~~g~~~~l~~GD~v~ip~g~~H~~~~~~  101 (119)
T 3lwc_A           43 GYGRYAPGQSLTETM-AVDDVMIVLEGRLSV--STDGETVTAGPGEIVYMPKGETVTIRSHE  101 (119)
T ss_dssp             EEEEECTTCEEEEEC-SSEEEEEEEEEEEEE--EETTEEEEECTTCEEEECTTCEEEEEEEE
T ss_pred             EEEEECCCCCcCccC-CCCEEEEEEeCEEEE--EECCEEEEECCCCEEEECCCCEEEEEcCC
Confidence            578999999887775 788999999999999  67999999999999999999999999975

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=99.10  E-value=4e-10  Score=102.20  Aligned_cols=67  Identities=19%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             EEEEEcCCCcCCc-cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPA-HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~-H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      .+++++||+..+. |+|..+|.+|||+|++++  .++++++.|++||++|++++.+|+++|.+++++.++
T Consensus       168 ~~~tl~PG~~~~~~~~h~~ee~~~vLeG~~~~--~~~~~~~~l~~GD~~~~~~~~pH~~~n~g~~~~~yl  235 (246)
T 1sfn_A          168 STMSFAPGASLPYAEVHYMEHGLLMLEGEGLY--KLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSKYL  235 (246)
T ss_dssp             EEEEECTTCBCSSCBCCSSCEEEEEEECEEEE--EETTEEEEEETTCEEEECTTCCEEEEEESSSCEEEE
T ss_pred             EEEEECCCCccCcccCCCceEEEEEEECEEEE--EECCEEEEcCCCCEEEECCCCCEEEEcCCCCCEEEE
Confidence            6789999999986 778899999999999999  789999999999999999999999999998766543

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=99.08  E-value=1e-09  Score=100.95  Aligned_cols=64  Identities=19%  Similarity=0.293  Sum_probs=59.0

Q ss_pred             EEEEEcCCCcCCc-cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC-eEE
Q 021698          216 AIVRFKAGSVEPA-HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE-TEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~-H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d-~~~  281 (309)
                      ..++++||...+. |+|...|++||++|++++  .++++.+.|++||++++|++++|+++|.++ ..+
T Consensus       185 ~~~~l~pg~~~~~~H~H~~~E~~yVl~G~~~~--~i~~~~~~l~~GD~i~i~~~~~H~~~n~~~~~~~  250 (274)
T 1sef_A          185 HILSFEPGASHAYIETHVQEHGAYLISGQGMY--NLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPL  250 (274)
T ss_dssp             EEEEECTTCBCSSCBCCSCCEEEEEEECEEEE--EETTEEEEEETTCEEEECTTCCEEEEEECSSSCE
T ss_pred             EEEEECCCCccCcceeccCeEEEEEEeCEEEE--EECCEEEEECCCCEEEECCCCCEEEEeCCCCCCE
Confidence            5678999999988 999999999999999999  789999999999999999999999999987 544

>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}

Probab=99.07  E-value=1.5e-10  Score=90.72  Aligned_cols=76  Identities=18%  Similarity=0.232  Sum_probs=58.9

Q ss_pred             EEeeeCCCe--EEEEEcCCCcCCccccCccEE-EEEEeCEEEEEEEeCC---eEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          207 KIIRESPTS--AIVRFKAGSVEPAHHHTFGHD-LVVLEGKKSVWNLTKG---ERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       207 ~il~~~~~~--~~v~l~pG~~~p~H~H~~~e~-vyVl~G~l~v~~~~~~---~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      +++-++...  ..++++||...++|+|+..++ ++|++|++++  ..++   +...+++||++|+|+|+.|++.|.++.+
T Consensus         9 ~V~ien~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v--~~~d~~~~~~~l~~G~~~~ip~G~~H~~~N~g~~p   86 (98)
T 3lag_A            9 EIQIDNDEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTI--VAPDGTRSLAQLKTGRSYARKAGVQHDVRNESTAE   86 (98)
T ss_dssp             EEEEESSSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CE--ECTTSCEECCCBCTTCCEEECTTCEEEEBCCSSSC
T ss_pred             eEEEcCCeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEE--EeCCCceEEEEecCCcEEEEcCCCcEECEECCCCe
Confidence            344444432  468899999999999998755 5678999999  5555   3456899999999999999999999888


Q ss_pred             EEEE
Q 021698          281 FFIK  284 (309)
Q Consensus       281 ~~i~  284 (309)
                      +.++
T Consensus        87 l~~I   90 (98)
T 3lag_A           87 IVFL   90 (98)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7543

>3d82_A Cupin 2, conserved barrel domain protein; structural genomics, joint center for structural genomics; 2.05A {Shewanella frigidimarina ncimb 400}

Probab=99.05  E-value=7.2e-10  Score=85.31  Aligned_cols=57  Identities=21%  Similarity=0.317  Sum_probs=51.2

Q ss_pred             CcCCccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          224 SVEPAHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       224 ~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      +..++|+|+. .|++||++|++++  .++++.+.+++||++++|+|++|++.|.++..++
T Consensus        40 ~~~~~H~H~~~~e~~~v~~G~~~~--~~~~~~~~l~~Gd~~~ip~~~~H~~~~~~~~~~l   97 (102)
T 3d82_A           40 GEFVWHEHADTDEVFIVMEGTLQI--AFRDQNITLQAGEMYVIPKGVEHKPMAKEECKIM   97 (102)
T ss_dssp             EECCCBCCTTCCEEEEEEESEEEE--ECSSCEEEEETTEEEEECTTCCBEEEEEEEEEEE
T ss_pred             CCCCceeCCCCcEEEEEEeCEEEE--EECCEEEEEcCCCEEEECCCCeEeeEcCCCCEEE
Confidence            4578999998 9999999999999  7899999999999999999999999998655554

>1fi2_A Oxalate oxidase, germin; beta-jellyroll, oxidoreductase; 1.60A {Hordeum vulgare} SCOP: b.82.1.2 PDB: 2et1_A 2ete_A* 2et7_A

Probab=99.03  E-value=7.5e-10  Score=97.37  Aligned_cols=67  Identities=24%  Similarity=0.275  Sum_probs=56.8

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC----Ce--EEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK----GE--RFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~----~~--~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..+++.||+..++|+|+. .|++||++|++++++..+    ++  ++.|++||++++|+|.+|+++|.+++.+.
T Consensus        75 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~v~~~~~~~~~~~~~~~~l~~GD~~~iP~g~~H~~~N~g~~~~~  148 (201)
T 1fi2_A           75 NRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAY  148 (201)
T ss_dssp             EEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECCGGGTTCEEEEEEETTCEEEECTTCCEEEEECSSSCEE
T ss_pred             EEEEECCCCCCCCeECCCCCEEEEEEeCEEEEEEEcCCCCCCeEEEEEECCCCEEEECCCCeEEEEeCCCCCEE
Confidence            567899999999999996 699999999999953211    45  89999999999999999999999865443

>2xlg_A SLL1785 protein, CUCA; metal binding protein, cupin; 1.80A {Synechocystis SP} PDB: 2xl7_A 2xl9_A 2xlf_A* 2xla_A

Probab=99.02  E-value=2.9e-10  Score=103.24  Aligned_cols=63  Identities=13%  Similarity=0.139  Sum_probs=56.3

Q ss_pred             EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEe--------CCe------------EEEecCCcEEEECCCCcEEEE
Q 021698          216 AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLT--------KGE------------RFDLTVGDYLFTPAGDVHRVK  274 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~--------~~~------------~~~L~pGd~i~iP~g~~H~~~  274 (309)
                      ..++++||...++|+|+ ..|++||++|++++  .+        +++            .+.+.|||++++|+|++|.++
T Consensus        46 ~~~~~~PG~~~~~H~H~~~~E~~yVLeG~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GD~i~iP~g~~H~~~  123 (239)
T 2xlg_A           46 AHAQIPPGGGPMPHIHYFINEWFWTPEGGIEL--FHSTKQYPNMDELPVVGGAGRGDLYSIQSEPKQLIYSPNHYMHGFV  123 (239)
T ss_dssp             EEEEECTTCSCCSEEESSEEEEEEETTCCCEE--EEEEEECCCTTSCCSTTTTCCEEEEEEECCTTEEEEECTTEEEEEE
T ss_pred             EEEEECCCCcCCCeECCCccEEEEEEEeEEEE--EEEecccccCCCcccccccccCceeEEEECCCCEEEECCCCCEEEE
Confidence            45688999999999999 56889999999999  56        777            999999999999999999999


Q ss_pred             EcCCeE
Q 021698          275 YYEETE  280 (309)
Q Consensus       275 n~~d~~  280 (309)
                      |.++.+
T Consensus       124 N~~~~~  129 (239)
T 2xlg_A          124 NPTDKT  129 (239)
T ss_dssp             CCSSSC
T ss_pred             eCCCCC
Confidence            998754

>1dgw_A Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_A 1cau_A 1cav_A 1caw_A 1cax_A

Probab=99.02  E-value=6.9e-10  Score=96.01  Aligned_cols=70  Identities=19%  Similarity=0.162  Sum_probs=57.3

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe--CCeEEEecCCcEEEECCCCcEEEEEcCCe-EEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT--KGERFDLTVGDYLFTPAGDVHRVKYYEET-EFFIKW  285 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~--~~~~~~L~pGd~i~iP~g~~H~~~n~~d~-~~~i~~  285 (309)
                      ..++++||+..++|+|...|++||++|++++++..  +++++.|++||++++|+|.+|++.|.++. .+.+++
T Consensus        44 ~~~~l~pg~~~~pHh~~a~E~~yVl~G~~~v~v~~~~~~~~~~l~~GDv~~~P~g~~H~~~N~g~~~~l~~l~  116 (178)
T 1dgw_A           44 LEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILK  116 (178)
T ss_dssp             EEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSSCEEEEE
T ss_pred             EEEEecCCcEecCcCCCCCEEEEEEeEEEEEEEEeCCCcEEEEECCCCEEEECCCCeEEEEeCCCCCCEEEEE
Confidence            56889999999999445689999999999995211  26789999999999999999999999865 554443

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=99.01  E-value=1.4e-09  Score=100.17  Aligned_cols=65  Identities=17%  Similarity=0.191  Sum_probs=59.9

Q ss_pred             EEEEEcCCCcCCc-cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPA-HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~-H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+++++||+.+|. |+|.++|.+|||+|+..+  .++++++.+++||++|++|+++|.+.|.+++.+.
T Consensus       189 ~~~t~~PG~~~p~~e~H~~eh~~~vL~G~g~y--~l~~~~~~V~~GD~i~~~~~~~h~~~n~G~e~~~  254 (266)
T 4e2q_A          189 HTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIY--RLGDNWYPVQAGDVIWMAPFVPQWYAALGKTRSR  254 (266)
T ss_dssp             EEEEECTTCBCSSCCCCSCCEEEEEEECEEEE--EETTEEEEEETTCEEEECTTCCEEEEEESSSCEE
T ss_pred             EEEEECCCcCcCCceEcccceEEEEEeceEEE--EECCEEEEecCCCEEEECCCCcEEEEeCCCCCEE
Confidence            5789999999996 889999999999999999  7899999999999999999999999999876653

>4b29_A Dimethylsulfoniopropionate lyase; hydrolase, dimethylsulfide, sulphur cycle; 1.72A {Roseovarius nubinhibens ism}

Probab=99.01  E-value=7e-10  Score=98.82  Aligned_cols=70  Identities=19%  Similarity=0.257  Sum_probs=61.7

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-CeEEEecCCcEEEECCCCcEEEEEcCCeEE--EEEEcCC
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEETEF--FIKWDGR  288 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~--~i~~~g~  288 (309)
                      .++.+.||...|+|.|+.+|+.|||+|++++  .++ ++++.++|||++++|+|++|.+++ +++++  +++|.|.
T Consensus       135 G~v~l~PG~~yP~HsHp~EEiy~VLsG~~e~--~v~~g~~~~l~pGd~v~ipsgv~Ha~rt-~dePllalwvW~G~  207 (217)
T 4b29_A          135 TVGYWGPGLDYGWHEHLPEELYSVVSGRALF--HLRNAPDLMLEPGQTRFHPANAPHAMTT-LTDPILTLVLWRGA  207 (217)
T ss_dssp             EEEEECSSCEEEEEECSSEEEEEEEEECEEE--EETTSCCEEECTTCEEEECTTCCEEEEC-CSSCEEEEEEEEST
T ss_pred             EEEEECCCCcCCCCCCCCceEEEEEeCCEEE--EECCCCEEecCCCCEEEcCCCCceeEEE-CCccEEEEEEEeCC
Confidence            5788999999999999999999999999999  456 899999999999999999999985 65665  6777774

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=99.00  E-value=6.4e-10  Score=102.79  Aligned_cols=68  Identities=24%  Similarity=0.391  Sum_probs=59.1

Q ss_pred             EEEEEcCCCcC--CccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698          216 AIVRFKAGSVE--PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~v~l~pG~~~--p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~  285 (309)
                      .+++++||+..  +.|.|..+|++||++|++++  .++++++.|++||++++|++++|+++|.++..+.++|
T Consensus        71 ~~~~l~PG~~~~~~~h~H~~eE~~~Vl~G~l~v--~v~g~~~~L~~GD~i~ip~~~~H~~~N~g~~~~~~l~  140 (278)
T 1sq4_A           71 YIVELAPNGGSDKPEQDPNAEAVLFVVEGELSL--TLQGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHW  140 (278)
T ss_dssp             EEEEEEEEEEESSCCCCTTEEEEEEEEESCEEE--EESSCEEEECTTEEEEECTTCCEEEECCSSSCEEEEE
T ss_pred             EEEEECCCCccCCCCcCCCceEEEEEEeCEEEE--EECCEEEEECCCCEEEECCCCcEEEEECCCCCEEEEE
Confidence            56889999876  56889988999999999999  6899999999999999999999999999876554433

>4e2q_A Ureidoglycine aminohydrolase; BI-cupin, manganese binding, endoplasmic RET hydrolase; 2.50A {Arabidopsis thaliana} PDB: 4e2s_A

Probab=98.99  E-value=8.3e-10  Score=101.63  Aligned_cols=65  Identities=18%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-CeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+++++||+..+.|.|..+|++||++|++++  .++ ++++.|++||++|+|++.+|+++|.++..++
T Consensus        73 ~lv~l~PGg~s~~~~h~~EEfiyVleG~l~l--~l~~g~~~~L~~Gds~y~p~~~~H~~~N~~~Ar~l  138 (266)
T 4e2q_A           73 YLAKMKEMSSSGLPPQDIERLIFVVEGAVTL--TNTSSSSKKLTVDSYAYLPPNFHHSLDCVESATLV  138 (266)
T ss_dssp             EEEEECSSEECCCCCTTEEEEEEEEEECEEE--EC--CCCEEECTTEEEEECTTCCCEEEESSCEEEE
T ss_pred             EEEEECcCCcCCCCCCCCeEEEEEEEEEEEE--EECCCcEEEEcCCCEEEECCCCCEEEEeCCCEEEE
Confidence            6789999999888999999999999999999  678 8999999999999999999999997655444

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.98  E-value=1.4e-09  Score=101.54  Aligned_cols=87  Identities=24%  Similarity=0.355  Sum_probs=69.3

Q ss_pred             eeecCCCCceeecCCceEEEeeeC----CC--eEEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCc
Q 021698          189 LVKNRELNPVEMIPGGSMKIIRES----PT--SAIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGD  261 (309)
Q Consensus       189 l~~~~~~~~~~~~pgg~~~il~~~----~~--~~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd  261 (309)
                      +++..+...+. ..|..++++...    ..  ...+++.||...++|+|+ ..|++||++|++++  .++++.+.|++||
T Consensus        17 v~r~~~~~~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~pg~~~~~h~H~~~~e~~~Vl~G~~~~--~~~~~~~~l~~Gd   93 (337)
T 1y3t_A           17 LLRSGEGERYL-FGRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLEL--TLDGERYLLISGD   93 (337)
T ss_dssp             EECTTCSEEEE-ETTEEEEEEECHHHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEE--EETTEEEEECTTC
T ss_pred             EecCCCccEEE-ECCeEEEEEeecCCCCCeEEEEEEEeCCCCCCCceeCCCceEEEEEEECEEEE--EECCEEEEECCCC
Confidence            45665554433 355566665421    12  256789999999999999 88999999999999  6799999999999


Q ss_pred             EEEECCCCcEEEEEcCC
Q 021698          262 YLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       262 ~i~iP~g~~H~~~n~~d  278 (309)
                      ++++|+|++|+++|.++
T Consensus        94 ~~~~p~~~~H~~~n~~~  110 (337)
T 1y3t_A           94 YANIPAGTPHSYRMQSH  110 (337)
T ss_dssp             EEEECTTCCEEEEECST
T ss_pred             EEEECCCCcEEEEECCC
Confidence            99999999999999986

>1x82_A Glucose-6-phosphate isomerase; cupin superfamily, hyperthermophIle, phosphoglucose isomerase, extremeophIle; HET: PA5; 1.50A {Pyrococcus furiosus} SCOP: b.82.1.7 PDB: 1x7n_A* 1x8e_A 1qxr_A* 1qxj_A* 1qy4_A* 2gc1_A* 2gc0_A* 2gc2_A* 2gc3_A* 3sxw_A 1j3q_A 1j3p_A 1j3r_A*

Probab=98.98  E-value=1.2e-09  Score=95.33  Aligned_cols=65  Identities=23%  Similarity=0.357  Sum_probs=55.8

Q ss_pred             EEEEEcCCCc------CCccccCc---cEEEEEEeCEEEEEEEeCCeE-----EEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          216 AIVRFKAGSV------EPAHHHTF---GHDLVVLEGKKSVWNLTKGER-----FDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~------~p~H~H~~---~e~vyVl~G~l~v~~~~~~~~-----~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      .+++++||..      .++|+|+.   .|++||++|++.+  .++++.     +.|++||++++|+|++|++.|.++..+
T Consensus        70 ~~~~l~PG~~~~E~~~~~~H~H~~~~~~E~~~Vl~G~~~~--~i~~~~g~~~~~~l~~GD~v~ip~g~~H~~~N~g~~~~  147 (190)
T 1x82_A           70 ATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGM--LLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPF  147 (190)
T ss_dssp             EEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEE--EEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSSCE
T ss_pred             EEEEECCCcCCCcccCCCCeECCCCCCCEEEEEEcCEEEE--EEcCcCCcEEEEEECCCcEEEECCCCeEEEEECCcccE
Confidence            4568999988      77899974   6999999999999  566665     999999999999999999999986554


Q ss_pred             E
Q 021698          282 F  282 (309)
Q Consensus       282 ~  282 (309)
                      .
T Consensus       148 ~  148 (190)
T 1x82_A          148 I  148 (190)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2opk_A Hypothetical protein; putative mannose-6-phosphate isomerase, structural genomics, center for structural genomics, JCSG; 2.10A {Ralstonia eutropha}

Probab=98.98  E-value=3.7e-09  Score=84.39  Aligned_cols=57  Identities=23%  Similarity=0.383  Sum_probs=49.1

Q ss_pred             cCCCcCCc---cccCccEEEEEEeCEEEEEEEeCCeE--EEecCCcEEEECCCCcEEEEEcCCe
Q 021698          221 KAGSVEPA---HHHTFGHDLVVLEGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       221 ~pG~~~p~---H~H~~~e~vyVl~G~l~v~~~~~~~~--~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      .+|...+.   |+|+..|++||++|++++  .++++.  +.|++||+++||++++|++.|.++.
T Consensus        38 ~~g~~~~~~~~~~~~~~E~~~Vl~G~~~l--~~~~~~~~~~l~~Gd~i~ipa~~~H~~~n~~~~   99 (112)
T 2opk_A           38 SNGQASPPGFWYDSPQDEWVMVVSGSAGI--ECEGDTAPRVMRPGDWLHVPAHCRHRVAWTDGG   99 (112)
T ss_dssp             ESSCCCCTTCCBCCSSEEEEEEEESCEEE--EETTCSSCEEECTTEEEEECTTCCEEEEEECSS
T ss_pred             eCCccCCCCccccCCccEEEEEEeCeEEE--EECCEEEEEEECCCCEEEECCCCcEEEEeCCCC
Confidence            45554433   778889999999999999  678888  9999999999999999999999854

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.97  E-value=1.1e-09  Score=99.86  Aligned_cols=69  Identities=19%  Similarity=0.285  Sum_probs=57.4

Q ss_pred             EEEEEcCCCcCCcccc--CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKAGSVEPAHHH--TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H--~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      .+++++||+..+.|.|  ..+|++||++|++++  .++++++.|++||++++|++++|+++|.++..+.++|.
T Consensus        62 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~--~~~~~~~~L~~Gd~~~~~~~~~H~~~N~~~~~~~~l~v  132 (261)
T 1rc6_A           62 YLVTLHQNGGNQQGFGGEGIETFLYVISGNITA--KAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLY  132 (261)
T ss_dssp             EEEEEEEEEEESSCSCCTTEEEEEEEEESEEEE--EETTEEEEEETTEEEEECTTCCCEEEECSSSCEEEEEE
T ss_pred             EEEEEcCCCccCCCCCCCCceEEEEEEEeEEEE--EECCEEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEE
Confidence            5688999987765443  356789999999999  68999999999999999999999999998766554443

>1rc6_A Hypothetical protein YLBA; structural genomics, NYSGXRC, SGX clone NAME 3174C1TCT3B1, T T1521, PSI, protein initiative; 2.60A {Escherichia coli} SCOP: b.82.1.11

Probab=98.96  E-value=1.5e-09  Score=98.96  Aligned_cols=65  Identities=18%  Similarity=0.221  Sum_probs=56.6

Q ss_pred             EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC-eEEE
Q 021698          216 AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE-TEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d-~~~~  282 (309)
                      .+++++||+..+.|+|. ..|++||++|++++  .++++++.|++||++++|++++|+++|.++ ..+.
T Consensus       182 ~~~~~~pG~~~~~h~H~~~~E~~~Vl~G~~~~--~i~~~~~~l~~GD~i~~~~~~~H~~~n~g~~~~~~  248 (261)
T 1rc6_A          182 HILSFAPGASHGYIETHVQEHGAYILSGQGVY--NLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFS  248 (261)
T ss_dssp             EEEEECTTCCBEEEEEESSCEEEEEEESEEEE--ESSSCEEEEETTCEEEECSSEEEEEEEC----CEE
T ss_pred             EEEEECCCCccCcccCCCceEEEEEEEeEEEE--EECCEEEEeCCCCEEEECCCCcEEeEeCCCCcCEE
Confidence            57889999999999996 67899999999999  789999999999999999999999999987 5543

>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A

Probab=98.96  E-value=1.9e-09  Score=85.08  Aligned_cols=62  Identities=24%  Similarity=0.248  Sum_probs=53.1

Q ss_pred             EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-CeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-GERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..+..||.. ++| |+..|++||++|++++  .++ ++.+.|++||++++|+|++|+++|.++...+
T Consensus        35 ~~~~~pg~~-~~h-H~~~E~~~Vl~G~~~~--~i~~g~~~~l~~GD~i~ip~g~~H~~~n~~~~~~~   97 (101)
T 1o5u_A           35 IWEKEVSEF-DWY-YDTNETCYILEGKVEV--TTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKH   97 (101)
T ss_dssp             EEEECSEEE-EEE-CSSCEEEEEEEEEEEE--EETTCCEEEEETTCEEEECTTCEEEEEEEEEEEEE
T ss_pred             EEEeCCCcc-ccc-CCceEEEEEEeCEEEE--EECCCCEEEECCCCEEEECCCCcEEEEeCCCeeEE
Confidence            456777653 456 8899999999999999  677 8999999999999999999999998876554

>1sq4_A GLXB, glyoxylate-induced protein; structural genomics, double beta barrel protein, PSI, protei structure initiative; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.11

Probab=98.90  E-value=3.4e-09  Score=97.89  Aligned_cols=64  Identities=28%  Similarity=0.394  Sum_probs=58.3

Q ss_pred             EEEEEcCCCcCCc-cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          216 AIVRFKAGSVEPA-HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~-H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      .+++++||+.++. |+|..+|.+|||+|++.+  .++++++.|++||++|++++.+|++.|.+++.+
T Consensus       194 ~~~~l~pG~~i~~~~~h~~e~~~~il~G~~~~--~~~~~~~~v~~GD~~~~~~~~~h~~~n~g~~~~  258 (278)
T 1sq4_A          194 NIVNFEPGGVIPFAETHVMEHGLYVLEGKAVY--RLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRF  258 (278)
T ss_dssp             EEEEECSSSEESCCCCCSEEEEEEEEECEEEE--EETTEEEEEETTCEEEEEESCCEEEECCSSSCE
T ss_pred             EEEEECCCCCcCCCCCCCccEEEEEEeCEEEE--EECCEEEEeCCCCEEEECCCCCEEEEcCCCCCE
Confidence            5789999999997 677888889999999999  789999999999999999999999999987654

>1sef_A Conserved hypothetical protein; structural genomics, nysgxrc target T1582, PSI, protein STRU initiative; 2.05A {Enterococcus faecalis} SCOP: b.82.1.11

Probab=98.90  E-value=2.4e-09  Score=98.39  Aligned_cols=69  Identities=14%  Similarity=0.160  Sum_probs=57.3

Q ss_pred             EEEEEcCCCcCCcccc--CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKAGSVEPAHHH--TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H--~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      .+++++||+....|.|  ..+|++||++|++++  .++++++.|++||++++|++++|+++|.++..+.++|.
T Consensus        65 ~~~~l~pg~~~~~~~~~~~~ee~~~Vl~G~l~~--~~~~~~~~L~~GD~~~~~~~~~H~~~N~~~~~~~~l~v  135 (274)
T 1sef_A           65 YIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRV--SDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLY  135 (274)
T ss_dssp             EEEEEEEEEEECSCSSBTTEEEEEEEEESEEEE--ECSSCEEEEETTEEEEECTTSCCEEEESSSSCEEEEEE
T ss_pred             EEEEECCCCcCCCCCCCCCceEEEEEEEeEEEE--EECCEEEEECCCCEEEECCCCCEEEEeCCCCCEEEEEE
Confidence            5688999987654433  456789999999999  68999999999999999999999999998766554443

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=98.90  E-value=4e-09  Score=100.97  Aligned_cols=65  Identities=20%  Similarity=0.288  Sum_probs=58.2

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC-----CeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK-----GERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~-----~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..++++||+..++|+|+. .|++||++|++++  .++     ++++.|++||++++|++.+|++.|.++..+.
T Consensus       260 ~~~~l~pG~~~~~h~H~~~~E~~~Vl~G~~~~--~i~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~  330 (385)
T 1j58_A          260 ALVTVEPGAMRELHWHPNTHEWQYYISGKARM--TVFASDGHARTFNYQAGDVGYVPFAMGHYVENIGDEPLV  330 (385)
T ss_dssp             EEEEECTTCEEEEEECSSSCEEEEEEESEEEE--EEEEETTEEEEEEEESSCEEEECTTCBEEEEECSSSCEE
T ss_pred             EEEEECCCcccCceeCCCCCEEEEEEeCeEEE--EEEcCCCcEEEEEEcCCCEEEECCCCeEEEEECCCCCEE
Confidence            678899999999999998 8999999999999  455     6889999999999999999999999865543

>2pyt_A Ethanolamine utilization protein EUTQ; structural genomics, joint center for structural genomics, J protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.82.1.24

Probab=98.89  E-value=4.2e-09  Score=87.10  Aligned_cols=63  Identities=22%  Similarity=0.349  Sum_probs=51.6

Q ss_pred             eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          215 SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       215 ~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      ..+++++|| ..++| |..+|++|||+|++++  .++++.+.|++||++++|+|.+|++.+.++..+
T Consensus        59 ~~~~~~~pG-~~~~h-~~~~E~~~VLeG~~~l--~~~g~~~~l~~GD~i~~p~g~~h~~~~~~~~~~  121 (133)
T 2pyt_A           59 AGFMQWDNA-FFPWT-LNYDEIDMVLEGELHV--RHEGETMIAKAGDVMFIPKGSSIEFGTPTSVRF  121 (133)
T ss_dssp             EEEEEEEEE-EEEEE-CSSEEEEEEEEEEEEE--EETTEEEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred             EEEEEECCC-Ccccc-CCCCEEEEEEECEEEE--EECCEEEEECCCcEEEECCCCEEEEEeCCCEEE
Confidence            367889999 33333 3578899999999999  678999999999999999999999998655443

>1y3t_A Hypothetical protein YXAG; BI cupin, dioxygenase, oxidoreductase; 2.40A {Bacillus subtilis} SCOP: b.82.1.5 PDB: 2h0v_A*

Probab=98.88  E-value=1.2e-08  Score=95.27  Aligned_cols=87  Identities=21%  Similarity=0.316  Sum_probs=65.3

Q ss_pred             eeecCCCCceeecCCceEEEeeeCC-----CeEEEEEcC-CCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCc
Q 021698          189 LVKNRELNPVEMIPGGSMKIIRESP-----TSAIVRFKA-GSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGD  261 (309)
Q Consensus       189 l~~~~~~~~~~~~pgg~~~il~~~~-----~~~~v~l~p-G~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd  261 (309)
                      +++..+..... ..+..++.+....     ....+++.| |...++|+|+ ..|++||++|++++  .++++++.|++||
T Consensus       189 v~r~~~~~~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~p~g~~~~~h~H~~~~e~~~vl~G~~~~--~i~~~~~~l~~GD  265 (337)
T 1y3t_A          189 VLESGEGDRLL-TGDQLHRIVAAQKNTDGQFIVVSSEGPKGDRIVDHYHEYHTETFYCLEGQMTM--WTDGQEIQLNPGD  265 (337)
T ss_dssp             EECTTCSEEEE-ETTEEEEEEECGGGTTTSCEEEEEEECSCCCCCCEECSSCEEEEEEEESCEEE--EETTEEEEECTTC
T ss_pred             EECCCCcCEEE-ECCcEEEEEecccccCCcEEEEEEEcCCCCCCCCcCCCCCcEEEEEEeCEEEE--EECCEEEEECCCC
Confidence            34444444333 2455666664211     134556655 5667899999 68999999999999  6799999999999


Q ss_pred             EEEECCCCcEEEEEcCC
Q 021698          262 YLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       262 ~i~iP~g~~H~~~n~~d  278 (309)
                      ++++|++.+|++.|.++
T Consensus       266 ~~~ip~~~~H~~~n~~~  282 (337)
T 1y3t_A          266 FLHVPANTVHSYRLDSH  282 (337)
T ss_dssp             EEEECTTCCEEEEECSS
T ss_pred             EEEECCCCeEEEEECCC
Confidence            99999999999999986

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=98.87  E-value=5.7e-09  Score=98.83  Aligned_cols=82  Identities=21%  Similarity=0.321  Sum_probs=63.6

Q ss_pred             cCCceEEEeeeC--CC-----eEEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEe-CC--eEEEecCCcEEEECCCC
Q 021698          201 IPGGSMKIIRES--PT-----SAIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLT-KG--ERFDLTVGDYLFTPAGD  269 (309)
Q Consensus       201 ~pgg~~~il~~~--~~-----~~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~-~~--~~~~L~pGd~i~iP~g~  269 (309)
                      ..+|..+.+...  +.     ...++++||+..++|||+ ..|++||++|++++++.. ++  +.+.|++||++++|+|+
T Consensus        33 ~~~G~~~~~~~~~~p~~~~~~~~~~~l~pg~~~~~H~H~~~~E~~yVl~G~~~~~v~~~~g~~~~~~l~~GD~~~ip~g~  112 (361)
T 2vqa_A           33 YDGGTTKQVGTYNFPVSKGMAGVYMSLEPGAIRELHWHANAAEWAYVMEGRTRITLTSPEGKVEIADVDKGGLWYFPRGW  112 (361)
T ss_dssp             ETTEEEEEESTTTCTTCCSCEEEEEEECTTCEEEEEECTTCCEEEEEEESEEEEEEECTTSCEEEEEEETTEEEEECTTC
T ss_pred             cCCceEEEeChhhCccccceeeEEEEEcCCCCCCceeCCCCCEEEEEEEeEEEEEEEeCCCcEEEEEEcCCCEEEECCCC
Confidence            366666655321  11     257789999988999999 889999999999995221 44  57999999999999999


Q ss_pred             cEEEEEcCCeEEE
Q 021698          270 VHRVKYYEETEFF  282 (309)
Q Consensus       270 ~H~~~n~~d~~~~  282 (309)
                      +|++.|.++..+.
T Consensus       113 ~H~~~n~~~~~~~  125 (361)
T 2vqa_A          113 GHSIEGIGPDTAK  125 (361)
T ss_dssp             EEEEEECSSSCEE
T ss_pred             eEEEEeCCCCCEE
Confidence            9999999854433

>2vqa_A SLL1358 protein, MNCA; periplasmic binding protein, metal-binding protein, cupin, BI-cupin, oxalate decarboxylase; 2.95A {Synechocystis SP}

Probab=98.87  E-value=5.5e-09  Score=98.97  Aligned_cols=65  Identities=22%  Similarity=0.365  Sum_probs=57.6

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEe---CCe--EEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLT---KGE--RFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~---~~~--~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..++++||+..++|+|+. .|++||++|++++  .+   +++  ++.|++||++++|+|.+|.+.|.++..+.
T Consensus       237 ~~~~l~pg~~~~~H~H~~~~E~~~Vl~G~~~~--~v~~~~g~~~~~~l~~GD~~~ip~~~~H~~~n~~~~~~~  307 (361)
T 2vqa_A          237 ALIHLEPGAMRQLHWHPNADEWQYVLDGEMDL--TVFASEGKASVSRLQQGDVGYVPKGYGHAIRNSSQKPLD  307 (361)
T ss_dssp             EEEEECTTCEEEEEECSSCCEEEEEEESCEEE--EEECSTTCEEEEEECTTCEEEECTTCEEEEECCSSSCEE
T ss_pred             EEEEECCCcccccccCCCCCEEEEEEeCEEEE--EEEcCCCcEEEEEECCCCEEEECCCCeEEeEECCCCCEE
Confidence            678899999999999998 8999999999999  45   666  89999999999999999999999865443

>4axo_A EUTQ, ethanolamine utilization protein; structural protein, bacterial microcompartment, BMC; 1.00A {Clostridium difficile}

Probab=98.86  E-value=6.2e-09  Score=88.16  Aligned_cols=62  Identities=15%  Similarity=0.330  Sum_probs=50.1

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      .++++. ++..++| |..+|+.|||+|++++  .++++++.|+|||+++||+|++|++.|.+.+.+
T Consensus        69 g~~~~e-~~~~~~~-~~~eE~~yVLeG~~~l--~i~g~~~~l~~GD~i~iP~G~~h~~~n~~~a~~  130 (151)
T 4axo_A           69 GMMEMK-ETTFDWT-LNYDEIDYVIDGTLDI--IIDGRKVSASSGELIFIPKGSKIQFSVPDYARF  130 (151)
T ss_dssp             EEEEEE-EEEEEEE-CSSEEEEEEEEEEEEE--EETTEEEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred             EEEEEc-CccccEe-CCCcEEEEEEEeEEEE--EECCEEEEEcCCCEEEECCCCEEEEEeCCCEEE
Confidence            566776 4444433 5677899999999999  679999999999999999999999999844433

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.83  E-value=4.9e-09  Score=100.13  Aligned_cols=66  Identities=24%  Similarity=0.379  Sum_probs=59.3

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..++++||...+.|+|...|++||++|+++++ .++++.+.+++||++++|+|++|++.|.++..+.
T Consensus       103 ~~~~l~PG~~~~~H~H~~~e~~yVl~G~g~~t-~v~g~~~~l~~GD~~~iP~g~~H~~~n~~~~~~~  168 (354)
T 2d40_A          103 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAFT-AVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVI  168 (354)
T ss_dssp             EEEEECTTCEEEEEEESSCEEEEEEECSSCEE-EETTEEEECCTTCEEEECTTSCEEEECCSSSCEE
T ss_pred             EEEEECCCCCcCCeecCcceEEEEEEEEEEEE-EECCEEEEEcCCCEEEECCCCcEEeEeCCCCCEE
Confidence            57889999999999999999999999998774 4689999999999999999999999999875543

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=98.80  E-value=1.3e-08  Score=100.03  Aligned_cols=69  Identities=19%  Similarity=0.186  Sum_probs=59.3

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEEcC-CeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~i~  284 (309)
                      ..++++||+..++|+|...|++||++|++++.+...+  +++.|++||++++|+|++|++.|.+ ++++.++
T Consensus        89 ~~~~l~Pgg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~~P~G~~H~~~N~g~~~~l~~l  160 (445)
T 2cav_A           89 LEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRIL  160 (445)
T ss_dssp             EEEEECSSEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSSCCEEEE
T ss_pred             EEEEECCCcCccCcCCCCceEEEEEeCEEEEEEEeCCCCEEEEecCCCEEEECCCCcEEEEECCCCCCEEEE
Confidence            5689999999999988889999999999999633233  7899999999999999999999998 6666554

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.80  E-value=2.1e-08  Score=95.44  Aligned_cols=62  Identities=16%  Similarity=0.150  Sum_probs=52.3

Q ss_pred             EEEEcCCCc-CC--ccccC-ccEEEEEEeCEEEEEEEeCC-----eEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          217 IVRFKAGSV-EP--AHHHT-FGHDLVVLEGKKSVWNLTKG-----ERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       217 ~v~l~pG~~-~p--~H~H~-~~e~vyVl~G~l~v~~~~~~-----~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      ...+.|++. .+  +|+|+ ..|++||++|++++  .+++     +.+.|++||++++|+|++|+++|.++..
T Consensus        51 ~~~~~p~g~~~~~~~H~H~~~~E~~~Vl~G~~~~--~v~~~~g~~~~~~L~~GD~v~ip~g~~H~~~n~~~~~  121 (350)
T 1juh_A           51 MGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQL--WAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDT  121 (350)
T ss_dssp             EEEEECCCSSCSSCCEECSSCEEEEEEEESEEEE--EEEETTSCCEEEEEETTCEEEECTTEEEEEEECSTTE
T ss_pred             EEEEcCCCCCCCCccccCCCceEEEEEEEEEEEE--EECCcCCceEEEEECCCCEEEECCCCcEEEEeCCCCC
Confidence            355566654 45  89998 77889999999999  5677     8999999999999999999999998643

>1sfn_A Conserved hypothetical protein; structural genomics, nysgxrc target T1583, PSI, protein STRU initiative; 2.46A {Deinococcus radiodurans} SCOP: b.82.1.11

Probab=98.75  E-value=1.9e-08  Score=91.02  Aligned_cols=63  Identities=24%  Similarity=0.333  Sum_probs=54.9

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+++++||+..+.|.  .+|++||++|++++  .++++++.|++||++++|++++|+++|.++..++
T Consensus        53 ~~~~l~Pg~~~~~~~--~ee~~~Vl~G~~~~--~~~~~~~~l~~Gd~~~~p~~~~H~~~n~~~~~~l  115 (246)
T 1sfn_A           53 FTAEMPAGAQATESV--YQRFAFVLSGEVDV--AVGGETRTLREYDYVYLPAGEKHMLTAKTDARVS  115 (246)
T ss_dssp             EEEEECTTCEEECCS--SEEEEEEEEEEEEE--ECSSCEEEECTTEEEEECTTCCCEEEEEEEEEEE
T ss_pred             EEEEECCCCcCCCCc--eeEEEEEEECEEEE--EECCEEEEECCCCEEEECCCCCEEEEeCCCEEEE
Confidence            568899998887775  77889999999999  7899999999999999999999999998444443

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.74  E-value=3.4e-08  Score=95.62  Aligned_cols=64  Identities=23%  Similarity=0.285  Sum_probs=59.1

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC-CeEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~  281 (309)
                      .+..++||...+.|+|...+++||++|+..+  .++++++.+++||++++|+|.+|.+.|.+ ++.+
T Consensus       297 ~~~~l~PG~~~~~HrH~~~~v~~VleG~G~~--~V~ge~~~~~~GD~~~iP~g~~H~~~N~g~~e~~  361 (394)
T 3bu7_A          297 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYS--IVGGKRFDWSEHDIFCVPAWTWHEHCNTQERDDA  361 (394)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEECCEEE--EETTEEEEECTTCEEEECTTCCEEEEECCSSCCE
T ss_pred             EEEEECCCCcCCCcccCCcEEEEEEeCeEEE--EECCEEEEEeCCCEEEECCCCeEEeEeCCCCCCe
Confidence            6789999999999999999999999999998  78999999999999999999999999987 4543

>3bcw_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.60A {Bordetella bronchiseptica RB50}

Probab=98.74  E-value=2.1e-08  Score=81.93  Aligned_cols=63  Identities=16%  Similarity=0.278  Sum_probs=52.8

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CCeEEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KGERFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      .+.+..||... +|.|...|++|||+|++++  .. +++.+.|++||++++|+|.+|++.|.++..-
T Consensus        52 g~w~~~pG~~~-~~~~~~~E~~~Vl~G~~~l--~~~~g~~~~l~~GD~~~ip~g~~h~~~~~~~~rK  115 (123)
T 3bcw_A           52 GVWESTSGSFQ-SNTTGYIEYCHIIEGEARL--VDPDGTVHAVKAGDAFIMPEGYTGRWEVDRHVKK  115 (123)
T ss_dssp             EEEEEEEEEEE-CCCTTEEEEEEEEEEEEEE--ECTTCCEEEEETTCEEEECTTCCCEEEEEEEEEE
T ss_pred             EEEEECCCcee-eEcCCCcEEEEEEEEEEEE--EECCCeEEEECCCCEEEECCCCeEEEEECCceeE
Confidence            45677777543 5777668999999999999  56 7889999999999999999999999986543

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=98.72  E-value=5.1e-08  Score=87.47  Aligned_cols=89  Identities=25%  Similarity=0.361  Sum_probs=70.5

Q ss_pred             ecCCCCceee-cCCceEEEeeeCC-C----eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEE
Q 021698          191 KNRELNPVEM-IPGGSMKIIRESP-T----SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLF  264 (309)
Q Consensus       191 ~~~~~~~~~~-~pgg~~~il~~~~-~----~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~  264 (309)
                      ...+.++... .+|...+.|..+. .    ..+++++||...|.|+|+..|++|||+|+++-    +  ...+++||+++
T Consensus        15 ~~~~~~W~~~~~~Gv~~~~L~~~~~e~g~~~~lvr~~pG~~~p~H~H~g~Ee~~VL~G~f~d----~--~~~~~~Gd~~~   88 (223)
T 3o14_A           15 DTDQLEWRPSPMKGVERRMLDRIGGEVARATSIVRYAPGSRFSAHTHDGGEEFIVLDGVFQD----E--HGDYPAGTYVR   88 (223)
T ss_dssp             EGGGSCCEECSSTTEEEEEEEEESSSSCEEEEEEEECTTEECCCEECTTCEEEEEEEEEEEE----T--TEEEETTEEEE
T ss_pred             eCccCCceeCCCCCEEEEEeecCCCccccEEEEEEECCCCCcccccCCCCEEEEEEEeEEEE----C--CeEECCCeEEE
Confidence            5566666665 5777888775433 2    36899999999999999999999999999764    3  35788999999


Q ss_pred             ECCCCcEEEEEcCCeEEEEEE
Q 021698          265 TPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       265 iP~g~~H~~~n~~d~~~~i~~  285 (309)
                      .|+|..|......++.++++.
T Consensus        89 ~P~g~~H~p~a~~gc~~~vk~  109 (223)
T 3o14_A           89 NPPTTSHVPGSAEGCTIFVKL  109 (223)
T ss_dssp             ECTTCEECCEESSCEEEEEEE
T ss_pred             eCCCCccccEeCCCCEEEEEe
Confidence            999999999886667666654

>1j58_A YVRK protein; cupin, decarboxyklase, oxalate, manganese, formate, metal BI protein; 1.75A {Bacillus subtilis} SCOP: b.82.1.2 PDB: 1l3j_A 1uw8_A 2uyb_A 2uy9_A 2uy8_A 2v09_A 2uya_A 3s0m_A

Probab=98.70  E-value=3.1e-08  Score=94.77  Aligned_cols=63  Identities=27%  Similarity=0.379  Sum_probs=55.0

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CCe--EEEecCCcEEEECCCCcEEEEEcCC
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KGE--RFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~--~~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      ..+++.||+..++|||+..|++||++|++++++.. +++  .+.|++||++++|+|++|++.|.++
T Consensus        82 ~~~~l~pg~~~~~H~H~~~E~~~Vl~G~~~~~~~~~~g~~~~~~l~~GD~~~ip~g~~H~~~n~~~  147 (385)
T 1j58_A           82 VNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGLPHSIQALEE  147 (385)
T ss_dssp             EEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEEEEE
T ss_pred             EEEEECCCCCCCCccCChheEEEEEeeeEEEEEEeCCCcEEEEEeCCCCEEEECCCCeEEEEECCC
Confidence            56889999999999999999999999999994211 456  5699999999999999999999874

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=98.70  E-value=2.8e-08  Score=96.94  Aligned_cols=66  Identities=20%  Similarity=0.248  Sum_probs=56.9

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe--CCeEEEecCCcEEEECCCCcEEEEEcC-CeEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT--KGERFDLTVGDYLFTPAGDVHRVKYYE-ETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~--~~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~  281 (309)
                      ..++++||+..++|+|...|++||++|++++.+..  +++++.+++||++++|+|.+|++.|.+ ++.+
T Consensus        52 ~~~~l~PGg~~~pHh~~a~E~~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~gg~e~l  120 (416)
T 1uij_A           52 VQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNL  120 (416)
T ss_dssp             EEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCSSCCE
T ss_pred             EEEEeccCcCcccccCCCceEEEEEeeEEEEEEEECCCCeEEEecCCCEEEECCCCeEEEEecCCCCCE
Confidence            57899999999999778889999999999995221  457899999999999999999999994 6654

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.70  E-value=2.5e-08  Score=95.69  Aligned_cols=66  Identities=23%  Similarity=0.310  Sum_probs=60.5

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEE-EEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKS-VWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~-v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      .+.+++||...+.|.|..+++.||++|+.. +  .++++++.+++||++++|+|..|...|.+++.+++
T Consensus       106 ~~~~l~PG~~~~~HrH~~~ev~~VleG~G~~~--~vdG~~~~~~~GD~v~iP~g~~H~~~N~gde~l~~  172 (368)
T 3nw4_A          106 AIQYLGPRETAPEHRHSQNAFRFVVEGEGVWT--VVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMAW  172 (368)
T ss_dssp             EEEEECTTCEEEEEEESSCEEEECSSCEEEEE--EETTEEEEEETTCEEEECTTCCEEEEECSSSCEEE
T ss_pred             EEEEECCCCccCceecccceEEEEEecceEEE--EECCEEEEEeCCCEEEECCCCcEEeEeCCCCCeEE
Confidence            567899999999999999999999999996 5  68999999999999999999999999999877654

>2d40_A Z3393, putative gentisate 1,2-dioxygenase; gentisic acid, bicupin, tetramer, montreal- bacterial structural genomics initiative, BSGI; 2.41A {Escherichia coli} SCOP: b.82.1.23

Probab=98.69  E-value=5.9e-08  Score=92.57  Aligned_cols=65  Identities=17%  Similarity=0.216  Sum_probs=58.9

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+.+++||...++|+|+..++.||++|+.++  .++++++.+++||.++||++.+|++.|.++..++
T Consensus       271 ~~~~l~pG~~~~~H~h~~~ev~~v~~G~g~~--~v~~~~~~~~~GD~~~vP~~~~H~~~n~e~~~l~  335 (354)
T 2d40_A          271 FLQLLPKGFASRVARTTDSTIYHVVEGSGQV--IIGNETFSFSAKDIFVVPTWHGVSFQTTQDSVLF  335 (354)
T ss_dssp             EEEEECTTCBCCCBEESSCEEEEEEEEEEEE--EETTEEEEEETTCEEEECTTCCEEEEEEEEEEEE
T ss_pred             EEEEECCCCCCCceecCCcEEEEEEeCeEEE--EECCEEEEEcCCCEEEECCCCeEEEEeCCCEEEE
Confidence            6789999999999999999999999999999  6799999999999999999999999996544444

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=98.66  E-value=5.1e-08  Score=95.51  Aligned_cols=67  Identities=19%  Similarity=0.197  Sum_probs=57.3

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC--CeEEEecCCcEEEECCCCcEEEEEcC-CeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK--GERFDLTVGDYLFTPAGDVHRVKYYE-ETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~--~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~  282 (309)
                      ..++++||+..++|+|...|++||++|++++.+...  ..++.|++||.+++|+|.+|++.|.+ ++.+.
T Consensus        64 ~~~~l~PGg~~~pHh~~a~Ei~yVl~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~H~~~N~g~~e~l~  133 (434)
T 2ea7_A           64 VEFKSKPNTLLLPHHADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLR  133 (434)
T ss_dssp             EEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSSCCEE
T ss_pred             EEEEecCCcCccCccCCCceEEEEEecEEEEEEEeCCCCEEEEeCCCCEEEECCCccEEEEeCCCCCCeE
Confidence            578999999999997778899999999999953223  47899999999999999999999998 55543

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=98.64  E-value=1.4e-07  Score=93.41  Aligned_cols=81  Identities=15%  Similarity=0.194  Sum_probs=62.1

Q ss_pred             ceeecCCceEEEeeeC--C-------CeEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC--CeEE--EecCCcE
Q 021698          197 PVEMIPGGSMKIIRES--P-------TSAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK--GERF--DLTVGDY  262 (309)
Q Consensus       197 ~~~~~pgg~~~il~~~--~-------~~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~--~~~~--~L~pGd~  262 (309)
                      ++....|+.++.+...  |       ....++++||+..++|||+. .|++||++|++++++...  .+.+  .|++||+
T Consensus       313 ~~~~~~gG~v~~~~~~~~P~L~~l~is~~~v~l~pGa~~~pH~Hp~a~Ei~yVl~G~~~v~v~~~~G~~~~~~~l~~GDv  392 (476)
T 1fxz_A          313 DIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRV  392 (476)
T ss_dssp             SEEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCE
T ss_pred             CcccCCCeEEEEeccccCcccccCcceEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEecCCCEEeeeEEcCCCE
Confidence            3445667877766432  1       13678999999999999995 688999999999963221  2444  4999999


Q ss_pred             EEECCCCcEEEEEcCC
Q 021698          263 LFTPAGDVHRVKYYEE  278 (309)
Q Consensus       263 i~iP~g~~H~~~n~~d  278 (309)
                      ++||+|.+|...| ++
T Consensus       393 ~viP~G~~H~~~n-g~  407 (476)
T 1fxz_A          393 LIVPQNFVVAARS-QS  407 (476)
T ss_dssp             EEECTTCEEEEEE-CS
T ss_pred             EEECCCCeEEEEe-CC
Confidence            9999999999999 53

>3bu7_A Gentisate 1,2-dioxygenase; cupin domain, oxidoreductase, plasmid; 2.80A {Silicibacter pomeroyi} SCOP: b.82.1.23

Probab=98.64  E-value=9e-08  Score=92.64  Aligned_cols=68  Identities=26%  Similarity=0.411  Sum_probs=60.8

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEE-cCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY-YEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n-~~d~~~~i~  284 (309)
                      .+.+++||...+.|.|...++.||++|+..+. .++++++.+++||++++|+|..|...| .++..+.++
T Consensus       126 ~~~~l~PG~~~~~HrH~~~ev~~IleG~G~~t-~v~G~~~~~~~GD~i~~P~g~~H~~~N~~gde~l~~l  194 (394)
T 3bu7_A          126 GIQTMKAGERAGAHRHAASALRFIMEGSGAYT-IVDGHKVELGANDFVLTPNGTWHEHGILESGTECIWQ  194 (394)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEECSCEEE-EETTEEEEECTTCEEEECTTCCEEEEECTTCCCEEEE
T ss_pred             EEEEECCCCCcCCccCCcceEEEEEEeeEEEE-EECCEEEEEcCCCEEEECcCCCEEEEcCCCCCCEEEE
Confidence            57899999999999999999999999998653 579999999999999999999999999 888766543

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=98.64  E-value=2e-07  Score=92.90  Aligned_cols=82  Identities=17%  Similarity=0.151  Sum_probs=62.9

Q ss_pred             ceeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeC--CeEE--EecCCcE
Q 021698          197 PVEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTK--GERF--DLTVGDY  262 (309)
Q Consensus       197 ~~~~~pgg~~~il~~~--~~-------~~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~--~~~~--~L~pGd~  262 (309)
                      ++....|+.++.+...  |.       ...++++||+..++|||+ ..|++||++|++++++...  .+.+  .|++||+
T Consensus       347 ~~~~~~gG~v~~~~~~~fP~L~~l~is~a~v~L~PG~~~~pH~Hp~a~Ei~yVl~G~~~v~vv~~~G~~~~~~~l~~GDv  426 (510)
T 3c3v_A          347 DIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRGRAHVQVVDSNGNRVYDEELQEGHV  426 (510)
T ss_dssp             SEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCE
T ss_pred             CcccCCCeEEEEeccccCcccccceEEEEEEEecCCceecceECCCCCEEEEEEeCEEEEEEEeCCCCEEEeEEEcCCcE
Confidence            3445678888766432  21       267899999999999999 4689999999999963222  2444  4999999


Q ss_pred             EEECCCCcEEEEEcCCe
Q 021698          263 LFTPAGDVHRVKYYEET  279 (309)
Q Consensus       263 i~iP~g~~H~~~n~~d~  279 (309)
                      ++||+|.+|.+.| ++.
T Consensus       427 ~viP~G~~H~~~N-g~e  442 (510)
T 3c3v_A          427 LVVPQNFAVAGKS-QSD  442 (510)
T ss_dssp             EEECTTCEEEEEE-CSS
T ss_pred             EEECCCCeEEEEe-CCC
Confidence            9999999999999 543

>1yfu_A 3-hydroxyanthranilate-3,4-dioxygenase; cupin, oxidoreductase; 1.90A {Cupriavidus metallidurans} SCOP: b.82.1.20 PDB: 1yfw_A* 1yfx_A* 1yfy_A*

Probab=98.61  E-value=1.9e-07  Score=80.20  Aligned_cols=64  Identities=20%  Similarity=0.230  Sum_probs=52.4

Q ss_pred             cCCCcCCccccCccEEEEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEEcC-CeEEEEE
Q 021698          221 KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~i~  284 (309)
                      .|++...+|.|+.+|++||++|++.+.+..++  +...|++||.+.+|+|++|+....+ ++..+++
T Consensus        43 Gpn~r~d~H~h~~dE~FyvlkG~m~i~v~d~g~~~~v~l~eGE~f~lP~gvpH~P~r~~~e~~~lvi  109 (174)
T 1yfu_A           43 GPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPEAGSACLVI  109 (174)
T ss_dssp             SCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCCTTCEEEEE
T ss_pred             CCCcCccCcCCCCceEEEEEeeEEEEEEEcCCceeeEEECCCCEEEeCCCCCcCccccCCCCEEEEE
Confidence            46677999999999999999999999632223  5899999999999999999997776 6655543

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=98.60  E-value=8.3e-08  Score=94.63  Aligned_cols=83  Identities=13%  Similarity=0.111  Sum_probs=64.9

Q ss_pred             cCCceEEEeeeCCC--------eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--------------------
Q 021698          201 IPGGSMKIIRESPT--------SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--------------------  252 (309)
Q Consensus       201 ~pgg~~~il~~~~~--------~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--------------------  252 (309)
                      ..+|.++++.....        ...+++.||+..++|+|+..+++||++|++.+.+...+                    
T Consensus        43 se~G~~~~~~~~~~~l~~~gvs~~r~~i~pggl~~Ph~h~a~ei~yVl~G~g~vg~v~p~~~~tf~~~~~~~~~~~~~~~  122 (459)
T 2e9q_A           43 AEAGFTEVWDQDNDEFQCAGVNMIRHTIRPKGLLLPGFSNAPKLIFVAQGFGIRGIAIPGCAETYQTDLRRSQSAGSAFK  122 (459)
T ss_dssp             ETTEEEEECCTTSHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEEECCC-------CCC
T ss_pred             cCCcEEEecCCCChhhccCceEEEEEEEcCCCEecceecCCceEEEEEeeEEEEEEEeCCCcchhccchhhccccccccc
Confidence            45666666543321        25688999999999999999999999999999632222                    


Q ss_pred             ----eEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          253 ----ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       253 ----~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                          +.+.|++||+++||+|++|++.|.+++.+.+
T Consensus       123 d~~q~~~~l~~GDv~~iPaG~~H~~~N~g~~~l~~  157 (459)
T 2e9q_A          123 DQHQKIRPFREGDLLVVPAGVSHWMYNRGQSDLVL  157 (459)
T ss_dssp             EEECCCEEEETTEEEEECTTCCEEEEECSSSCEEE
T ss_pred             cccceeEEecCCCEEEECCCCCEEEEeCCCCCEEE
Confidence                2569999999999999999999999766544

>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ud1_A 1ucx_A

Probab=98.58  E-value=1.2e-07  Score=93.88  Aligned_cols=83  Identities=13%  Similarity=0.207  Sum_probs=66.0

Q ss_pred             cCCceEEEeeeCCC--------eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--------------------
Q 021698          201 IPGGSMKIIRESPT--------SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--------------------  252 (309)
Q Consensus       201 ~pgg~~~il~~~~~--------~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--------------------  252 (309)
                      ..+|.++++.....        ...+++.||+..++|+|+..+++||++|++.+.+...+                    
T Consensus        28 se~G~~e~~~~~~~~l~~~gvs~~r~~l~Pggl~~Ph~~~a~ei~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~  107 (476)
T 1fxz_A           28 SEGGLIETWNPNNKPFQCAGVALSRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRP  107 (476)
T ss_dssp             ETTEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC----------------
T ss_pred             cCCceEEeeCCCChhhccCceEEEEEEEcCCCEecceecCCceEEEEEecEEEEEEEcCCCcchhhcccccccccccccc
Confidence            45666666544321        25789999999999999999999999999998643211                    


Q ss_pred             -----eEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          253 -----ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       253 -----~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                           +.+.|++||+++||+|++|++.|.+++.+.+
T Consensus       108 ~d~~qk~~~l~~GDvi~iPaG~~h~~~N~G~~~l~~  143 (476)
T 1fxz_A          108 QDRHQKIYNFREGDLIAVPTGVAWWMYNNEDTPVVA  143 (476)
T ss_dssp             --CCCCEEEECTTEEEEECTTCEEEEEECSSSCEEE
T ss_pred             ccccceEEEEeCCCEEEECCCCcEEEEeCCCCCEEE
Confidence                 3789999999999999999999999765543

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=98.53  E-value=1.6e-07  Score=92.46  Aligned_cols=84  Identities=13%  Similarity=0.095  Sum_probs=67.5

Q ss_pred             cCCceEEEeeeCCC--------eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--e-----------------
Q 021698          201 IPGGSMKIIRESPT--------SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--E-----------------  253 (309)
Q Consensus       201 ~pgg~~~il~~~~~--------~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~-----------------  253 (309)
                      ..+|.+++++....        ...+++.||+..++|+|...+++||++|++.+.+...+  +                 
T Consensus        30 se~G~~e~~d~~~~~l~~~gvs~~R~~i~P~gl~~Ph~h~a~ei~yV~qG~g~~g~v~pgc~etf~~~~~~~~~~~~~~~  109 (465)
T 3qac_A           30 AERGLTEVWDSNEQEFRCAGVSVIRRTIEPHGLLLPSFTSAPELIYIEQGNGITGMMIPGCPETYESGSQQFQGGEDERI  109 (465)
T ss_dssp             ETTEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCC---------------
T ss_pred             CCCcEEEEECCCChhhcccceEEEEEEEcCCcCcccEEcCCCEEEEEEECcEEEEEecCCCCceeecchhcccccccccc
Confidence            46788887754331        25788999999999999999999999999988643332  2                 


Q ss_pred             ---------------------EEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          254 ---------------------RFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       254 ---------------------~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                                           ...+++||++++|+|+.|++.|.++.+++++
T Consensus       110 ~~~~~~~~~~~~~~~~d~hqk~~~~~~GDvi~iPaG~~hw~~N~G~~~lv~v  161 (465)
T 3qac_A          110 REQGSRKFGMRGDRFQDQHQKIRHLREGDIFAMPAGVSHWAYNNGDQPLVAV  161 (465)
T ss_dssp             ---------------CCCCCCEEEEETTEEEEECTTCEEEEECCSSSCEEEE
T ss_pred             ccccccccccccccccccccceeeecCCCEEEECCCCeEEEEcCCCCCEEEE
Confidence                                 4589999999999999999999998766543

>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein, plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A

Probab=98.53  E-value=2e-07  Score=92.67  Aligned_cols=82  Identities=12%  Similarity=0.144  Sum_probs=65.2

Q ss_pred             CCceEEEeeeCCC--------eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC----------------------
Q 021698          202 PGGSMKIIRESPT--------SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK----------------------  251 (309)
Q Consensus       202 pgg~~~il~~~~~--------~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~----------------------  251 (309)
                      .+|.++++.....        ...+++.||+..++|+|+..+++||++|++.+.+...                      
T Consensus        26 e~G~~e~~~~~~~~l~~~gv~~~r~~i~pggl~~Ph~~~~~~i~yV~~G~g~vg~v~pgc~et~~~~~~~~~~~~~~~~~  105 (493)
T 2d5f_A           26 EGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQ  105 (493)
T ss_dssp             SSEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC------------
T ss_pred             CCcEEEEeCCCChhhccCCEEEEEEEeCCCcEeCceecCCCeEEEEEeCEEEEEEEeCCCcccccccccccccccccccc
Confidence            4566666543321        2578999999999999999999999999999963321                      


Q ss_pred             ------CeEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          252 ------GERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       252 ------~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                            .+.+.|++||+++||+|++|++.|.+++.+.+
T Consensus       106 ~~~d~~qkv~~l~~GDvi~iPaG~~h~~~N~g~~~l~~  143 (493)
T 2d5f_A          106 QLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVA  143 (493)
T ss_dssp             -CSEEESCEEEEETTEEEEECTTCCEEEEECSSSCEEE
T ss_pred             ccccccceEEEecCCCEEEECCCCcEEEEeCCCCCEEE
Confidence                  14689999999999999999999999866654

>1juh_A Quercetin 2,3-dioxygenase; cupin, glycoprotein, beta sandwich, oxidoreduct; HET: NAG BMA MAN; 1.60A {Aspergillus japonicus} SCOP: b.82.1.5 PDB: 1gqh_A* 1h1i_A* 1h1m_A* 1gqg_A*

Probab=98.53  E-value=3.3e-07  Score=87.17  Aligned_cols=68  Identities=16%  Similarity=0.154  Sum_probs=56.4

Q ss_pred             EEEEcC---CCcCCccccCccEEEEEEeCEEEEEEEeCC-eEEEecCCcEEEECCCCcEEEEEcCCe-EEEEEEc
Q 021698          217 IVRFKA---GSVEPAHHHTFGHDLVVLEGKKSVWNLTKG-ERFDLTVGDYLFTPAGDVHRVKYYEET-EFFIKWD  286 (309)
Q Consensus       217 ~v~l~p---G~~~p~H~H~~~e~vyVl~G~l~v~~~~~~-~~~~L~pGd~i~iP~g~~H~~~n~~d~-~~~i~~~  286 (309)
                      .+.+++   |...+.|.|++.+.+|||+|++++  .+++ +.+.|++||+++||+|++|.+.+.++. .++++..
T Consensus       253 ~i~~~~~~~g~~~~~h~~~~~~~~~vleG~~~i--~i~g~~~~~l~~Gd~~~iPag~~h~~~~~~~~~~~l~~~~  325 (350)
T 1juh_A          253 TISMSTTPSTVTVPTWSFPGACAFQVQEGRVVV--QIGDYAATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVSS  325 (350)
T ss_dssp             EEEECCCCTTSCCCCBCCSSCEEEEEEESCEEE--EETTSCCEEECTTCEEEECTTCCEEEEESSSSEEEEEEEE
T ss_pred             EEeeccccCCCCCCcccCCCcEEEEEEeeEEEE--EECCeEEEEeCCCCEEEECCCCCEEEEecCCeEEEEEEec
Confidence            455555   457788999999999999999999  6788 899999999999999999999998764 4444343

>1vr3_A Acireductone dioxygenase; 13543033, structural genomics, JOI for structural genomics, JCSG, protein structure initiative oxidoreductase; 2.06A {Mus musculus} SCOP: b.82.1.6

Probab=98.51  E-value=3.6e-07  Score=80.11  Aligned_cols=62  Identities=24%  Similarity=0.288  Sum_probs=50.5

Q ss_pred             EEEEcCCC----------cCCccccCccEEEEEEeCEEEEEEEeCC---e--EEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          217 IVRFKAGS----------VEPAHHHTFGHDLVVLEGKKSVWNLTKG---E--RFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       217 ~v~l~pG~----------~~p~H~H~~~e~vyVl~G~l~v~~~~~~---~--~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      ++++.++.          ..++|.|+..|++||++|++.+  .+++   +  ...+++||+++||+|++|++.+.++..
T Consensus        78 ~v~~~p~~~p~~~~k~~~~~~~H~H~~~Ei~yVleG~G~f--~i~d~~d~~~~i~v~~GDlIiIPaG~~H~f~~~~~~~  154 (191)
T 1vr3_A           78 IITICKDTLPNYEEKIKMFFEEHLHLDEEIRYILEGSGYF--DVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEKNY  154 (191)
T ss_dssp             EEEESTTTSTTHHHHHHHHHSCEECSSCEEEEEEEEEEEE--EEECTTSCEEEEEEETTEEEEECTTCCEEEEECTTCC
T ss_pred             EEEECCCcCcchhhhhccCCcceECCcceEEEEEeceEEE--EECCCCCeEEEEEECCCCEEEECcCCcCCcccCCCCC
Confidence            56666664          2388999999999999999999  4554   3  458999999999999999999876643

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=98.46  E-value=2.5e-07  Score=89.68  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=68.4

Q ss_pred             CCceeecCCceEEEe---ee-------CC-C-eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe--CCeEEEecCC
Q 021698          195 LNPVEMIPGGSMKII---RE-------SP-T-SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT--KGERFDLTVG  260 (309)
Q Consensus       195 ~~~~~~~pgg~~~il---~~-------~~-~-~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~--~~~~~~L~pG  260 (309)
                      +...--..+|.++.+   ..       .. . ...+++.||+..++|+|...+++||++|++++.+..  +..++.|++|
T Consensus        22 ~~~~~~~e~G~i~~l~~~~~~~~~l~~~~~~s~~~~~l~pgg~~~ph~~~a~ei~yVl~G~~~v~~v~~~~~~~~~l~~G  101 (397)
T 2phl_A           22 WNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTS  101 (397)
T ss_dssp             EEEEEEETTEEEEEECCHHHHCGGGGGGTTCEEEEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEES
T ss_pred             ccceEEcCCEEEEEecccCCCChhhcccccEEEEEEEECCCcCccCEecCCCeEEEEEeeeEEEEEEeCCCcEEEEECCC
Confidence            333334567777765   22       11 1 267899999999999999999999999999996321  4567899999


Q ss_pred             cE------EEECCCCcEEEEEcC-CeEEEE
Q 021698          261 DY------LFTPAGDVHRVKYYE-ETEFFI  283 (309)
Q Consensus       261 d~------i~iP~g~~H~~~n~~-d~~~~i  283 (309)
                      |.      ++||+|++|++.|.+ ++.+.+
T Consensus       102 Dv~~~~~~~~iP~G~~h~~~N~g~~~~l~~  131 (397)
T 2phl_A          102 DNPIFSDHQKIPAGTIFYLVNPDPKEDLRI  131 (397)
T ss_dssp             SCTTSCSEEEECTTCEEEEEECCSSCCEEE
T ss_pred             CcccccceEEECCCCcEEEEeCCCCCCeEE
Confidence            99      999999999999998 555544

>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A {Arachis hypogaea}

Probab=98.45  E-value=3.9e-07  Score=90.76  Aligned_cols=83  Identities=11%  Similarity=0.197  Sum_probs=65.3

Q ss_pred             cCCceEEEeeeCCC--------eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--------------------
Q 021698          201 IPGGSMKIIRESPT--------SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--------------------  252 (309)
Q Consensus       201 ~pgg~~~il~~~~~--------~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--------------------  252 (309)
                      ..+|.+.++.....        ...+++.||+...+|+|+..+++||++|++.+.+...+                    
T Consensus        28 se~G~~e~~~~~~~~l~~~gvs~~r~~i~p~gl~lPh~~~a~~~~yV~~G~g~~g~v~pg~~et~~~~~~~~~~~~~~~~  107 (510)
T 3c3v_A           28 SEGGYIETWNPNNQEFECAGVALSRLVLRRNALRRPFYSNAPQEIFIQQGRGYFGLIFPGCPSTYEEPAQQGRRYQSQRP  107 (510)
T ss_dssp             ETTEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEECSSCEEEEEEECCEEEEEECTTCCCCEEEECCC---------
T ss_pred             cCCceEEEeCCCCcccccCcEEEEEEEECCCCCccceecCCCeEEEEEeCEEEEEEEeCCCccccccccccccccccccc
Confidence            35566666543321        26789999999999999999999999999999644321                    


Q ss_pred             ------------------eEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          253 ------------------ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       253 ------------------~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                                        +.+.|++||+++||+|++|++.|.+++.+.+
T Consensus       108 ~~~~~~~~~~~~~~d~~qkv~~v~~GDvi~iPaG~~hw~~N~g~~~l~~  156 (510)
T 3c3v_A          108 PRRLQEEDQSQQQQDSHQKVHRFNEGDLIAVPTGVAFWLYNDHDTDVVA  156 (510)
T ss_dssp             -----------CEEEEESCCEEECTTEEEEECTTCEEEEEECSSSCEEE
T ss_pred             cccccccccccccccccceEEEecCCCEEEECCCCCEEEEeCCCCCEEE
Confidence                              1378999999999999999999999866544

>1zvf_A 3-hydroxyanthranilate 3,4-dioxygenase; jellyroll beta-barrel, oxidoreductase; 2.41A {Saccharomyces cerevisiae} SCOP: b.82.1.20

Probab=98.45  E-value=1.9e-06  Score=74.02  Aligned_cols=63  Identities=11%  Similarity=0.043  Sum_probs=51.9

Q ss_pred             CCCcCCccccCccEEEEEEeCEEEEEEEeCC------eEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          222 AGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG------ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       222 pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~------~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      |+....+|+|+.+|++|+++|++.+.+..++      +...+++||.+.+|+|++|+.....++..+++
T Consensus        43 Pn~r~D~H~~~~eE~Fy~lkG~m~l~v~d~g~~~~~~~dv~i~eGdmfllP~gvpHsP~r~~e~v~lvi  111 (176)
T 1zvf_A           43 PNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVGIVV  111 (176)
T ss_dssp             SBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEEEEE
T ss_pred             CCcCCcCcCCCCceEEEEEeCEEEEEEEcCCCcccceeeEEECCCCEEEcCCCCCcCCcccCCcEEEEE
Confidence            5577899999999999999999999643324      48999999999999999999976666655543

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=98.43  E-value=8.4e-07  Score=88.36  Aligned_cols=81  Identities=12%  Similarity=0.155  Sum_probs=61.6

Q ss_pred             CceeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC-C-e--EEEecCCc
Q 021698          196 NPVEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK-G-E--RFDLTVGD  261 (309)
Q Consensus       196 ~~~~~~pgg~~~il~~~--~~-------~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~-~-~--~~~L~pGd  261 (309)
                      .++....|+.++.+...  |.       ...+.+.||+..++|||+. .|++||++|++++++... + +  +..|++||
T Consensus       368 ~d~~n~~GG~v~~a~~~~fP~L~~LgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~G~~v~~~~L~~GD  447 (531)
T 3fz3_A          368 ADIFSPRAGRISTLNSHNLPILRFLRLSAERGFFYRNGIYSPHWNVNAHSVVYVIRGNARVQVVNENGDAILDQEVQQGQ  447 (531)
T ss_dssp             CSEEETTTEEEEEESTTTCTHHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTC
T ss_pred             CCcccCCCeEEEEeccccCCccccCceeEEEEEeecCccccceEcCCCCEEEEEEeCcEEEEEEeCCCcEEEEEEecCCe
Confidence            33445568887766432  21       2678999999999999986 689999999999974332 2 2  57899999


Q ss_pred             EEEECCCCcEEEEEc
Q 021698          262 YLFTPAGDVHRVKYY  276 (309)
Q Consensus       262 ~i~iP~g~~H~~~n~  276 (309)
                      +++||+|.+|...+.
T Consensus       448 V~v~P~G~~H~~~ag  462 (531)
T 3fz3_A          448 LFIVPQNHGVIQQAG  462 (531)
T ss_dssp             EEEECTTCEEEEEEE
T ss_pred             EEEECCCCeEEEecC
Confidence            999999999976543

>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage globulin, plant protein; 2.20A {Cucurbita maxima} PDB: 2evx_A

Probab=98.41  E-value=1.4e-06  Score=85.92  Aligned_cols=82  Identities=16%  Similarity=0.150  Sum_probs=63.2

Q ss_pred             ceeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC--CeEEE--ecCCcE
Q 021698          197 PVEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK--GERFD--LTVGDY  262 (309)
Q Consensus       197 ~~~~~pgg~~~il~~~--~~-------~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~--~~~~~--L~pGd~  262 (309)
                      ++....+|.++.+...  |.       ...+.+.||+..++|||+. .|++||++|++++++...  .+.+.  |.+||.
T Consensus       297 ~~~~~~gG~v~~~~~~~fP~L~~l~iS~a~v~l~pG~~~~pH~Hp~A~Ei~yV~~G~~~v~vv~~~g~~~~~~~l~~GDv  376 (459)
T 2e9q_A          297 DVFNPRGGRISTANYHTLPILRQVRLSAERGVLYSNAMVAPHYTVNSHSVMYATRGNARVQVVDNFGQSVFDGEVREGQV  376 (459)
T ss_dssp             SEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCE
T ss_pred             CcccCCCeeEEEeccccCccccccccceEEEEeeCCcCccceECCCCCEEEEEEeeEEEEEEEeCCCCEEEeeEEeCCcE
Confidence            3445678888776432  21       2678999999999999996 488999999999974321  35554  999999


Q ss_pred             EEECCCCcEEEEEcCCe
Q 021698          263 LFTPAGDVHRVKYYEET  279 (309)
Q Consensus       263 i~iP~g~~H~~~n~~d~  279 (309)
                      ++||+|.+|...| ++.
T Consensus       377 ~v~P~G~~H~~~n-g~~  392 (459)
T 2e9q_A          377 LMIPQNFVVIKRA-SDR  392 (459)
T ss_dssp             EEECTTCEEEEEE-EEE
T ss_pred             EEECCCCEEEEEe-CCC
Confidence            9999999999999 533

>3nw4_A Gentisate 1,2-dioxygenase; beta-barrel, oxidoreductase; HET: GTQ; 2.00A {Pseudaminobacter salicylatoxidans} PDB: 3nvc_A* 3nst_A* 3njz_A* 2phd_A* 3nkt_A* 3nl1_A* 4fag_A* 4fbf_A 4fah_A

Probab=98.40  E-value=1.5e-06  Score=83.37  Aligned_cols=69  Identities=22%  Similarity=0.296  Sum_probs=62.5

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      ....++||...+.|+|...++++|++|+.++  .++++++.+++||.+++|++.+|+..|.++..++.+.+
T Consensus       282 ~~~~L~pG~~t~~hRht~s~Vy~V~eG~G~~--~I~~~~~~w~~gD~fvvP~w~~h~~~n~~~a~Lf~~~D  350 (368)
T 3nw4_A          282 EFHRLRAGTETATRNEVGSTVFQVFEGAGAV--VMNGETTKLEKGDMFVVPSWVPWSLQAETQFDLFRFSD  350 (368)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEESCEEE--EETTEEEEECTTCEEEECTTCCEEEEESSSEEEEEEES
T ss_pred             heEEECCCCccCCeeccccEEEEEEeCcEEE--EECCEEEEecCCCEEEECCCCcEEEEeCCCEEEEEEeC
Confidence            5678999999999999999999999999999  78999999999999999999999999987777665544

>2arc_A ARAC, arabinose operon regulatory protein; transcription factor, carbohydrate binding, coiled-coil, jelly roll; HET: ARA; 1.50A {Escherichia coli} SCOP: b.82.4.1 PDB: 2aac_A* 1xja_A 2ara_A

Probab=98.39  E-value=1.1e-06  Score=72.64  Aligned_cols=48  Identities=21%  Similarity=0.240  Sum_probs=45.3

Q ss_pred             ccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC
Q 021698          228 AHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       228 ~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~  277 (309)
                      +|.|+..+++||++|++++  .++++.+.+++||.+++|||++|++.+.+
T Consensus        33 p~~h~~~~i~~v~~G~~~~--~i~~~~~~l~~Gd~~~i~p~~~H~~~~~~   80 (164)
T 2arc_A           33 PLGMKGYILNLTIRGQGVV--KNQGREFVCRPGDILLFPPGEIHHYGRHP   80 (164)
T ss_dssp             TTCCSSEEEEEEEEECEEE--EETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred             ccCCCceEEEEEEEeEEEE--EECCEEEEecCCeEEEEcCCCCEEEEeCC
Confidence            6889999999999999999  78999999999999999999999998875

>2y0o_A Probable D-lyxose ketol-isomerase; carbohydrate metabolism, metal-binding, sugar ISO stress response; HET: MSE; 1.23A {Bacillus subtilis subsp}

Probab=98.38  E-value=8.2e-07  Score=76.74  Aligned_cols=61  Identities=23%  Similarity=0.320  Sum_probs=50.4

Q ss_pred             EEEEEcCCCcCCccccCc-------cEEEEEEeCEEEEEEEeCCeE---------------------EEecCCcEEEECC
Q 021698          216 AIVRFKAGSVEPAHHHTF-------GHDLVVLEGKKSVWNLTKGER---------------------FDLTVGDYLFTPA  267 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-------~e~vyVl~G~l~v~~~~~~~~---------------------~~L~pGd~i~iP~  267 (309)
                      .++.+.||+..|.|.|+.       .|-++|+.|.++++  ++++.                     ..|+|||++.|||
T Consensus        56 K~l~l~pGQ~~P~H~H~~~~~~~gK~E~~ivr~G~v~l~--~~g~~~~~~~v~v~dg~~~~~~a~~~i~L~pGesvtIpp  133 (175)
T 2y0o_A           56 KELVLFPGQTCPEHRHPPVDGQEGKQETFRCRYGKVYLY--VEGEKTPLPKVLPPQEDREHYTVWHEIELEPGGQYTIPP  133 (175)
T ss_dssp             EEEEECTTCEEEEEECCCCTTSCCCCEEEEEEEEEEEEE--ESSSCCSSCSCCCCGGGGGGCCCCEEEEECTTCEEEECT
T ss_pred             EEEEECCCCcCCceECCCCCCCCCCceeEEEecCEEEEE--ECCccccCcceeccCCceeeecCCcEEEECCCCEEEECC
Confidence            367889999999999987       34456999999994  46644                     5999999999999


Q ss_pred             CCcEEEEEcCC
Q 021698          268 GDVHRVKYYEE  278 (309)
Q Consensus       268 g~~H~~~n~~d  278 (309)
                      |++|++++.++
T Consensus       134 g~~H~f~agee  144 (175)
T 2y0o_A          134 NTKHWFQAGEE  144 (175)
T ss_dssp             TCCEEEEEEEE
T ss_pred             CCcEEEEeCCC
Confidence            99999999433

>2phl_A Phaseolin; plant SEED storage protein(vicilin); HET: NAG; 2.20A {Phaseolus vulgaris} SCOP: b.82.1.2 b.82.1.2 PDB: 1phs_A*

Probab=98.37  E-value=2.6e-06  Score=82.46  Aligned_cols=88  Identities=18%  Similarity=0.076  Sum_probs=67.1

Q ss_pred             ceeecCCceEEEeeeCCC---eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC-------Ce---EEEecCCcE
Q 021698          197 PVEMIPGGSMKIIRESPT---SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK-------GE---RFDLTVGDY  262 (309)
Q Consensus       197 ~~~~~pgg~~~il~~~~~---~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~-------~~---~~~L~pGd~  262 (309)
                      +....++|+++.+.....   ...+.+.||+..++|||+. .|+.||++|++++++...       +.   +..|++||.
T Consensus       220 p~~~n~~G~~~~v~~~~l~is~a~v~l~pG~~~~PH~h~~A~Ei~yVl~G~g~v~vv~~~~~~~~~g~~~~~~~l~~GDV  299 (397)
T 2phl_A          220 NTIGNEFGNLTERTDNSLNVLISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDV  299 (397)
T ss_dssp             CEEEETTEEEEEEEETTTTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCE
T ss_pred             CcccCCCCeEEEEeeccCCeeEEEEEEcCCcEeeeeEcCCCCEEEEEEeeeEEEEEEeccccccCCCceEEEEEecCCCE
Confidence            333456777765544322   2678999999999999985 578899999999974432       21   478999999


Q ss_pred             EEECCCCcEEEEEcCCeEEEEE
Q 021698          263 LFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       263 i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ++||+|.+|...|.++..++..
T Consensus       300 ~vvP~G~~h~~~n~~~l~~l~f  321 (397)
T 2phl_A          300 FVIPAAYPVAIKATSNVNFTGF  321 (397)
T ss_dssp             EEECTTCCEEEEESSSEEEEEE
T ss_pred             EEECCCCeEEEEeCCCeEEEEE
Confidence            9999999999999987666543

>1zrr_A E-2/E-2' protein; nickel, cupin, beta helix, methionine salvage, oxidoreductase; NMR {Klebsiella oxytoca} SCOP: b.82.1.6 PDB: 2hji_A

Probab=98.34  E-value=1.9e-07  Score=81.11  Aligned_cols=53  Identities=19%  Similarity=0.068  Sum_probs=44.7

Q ss_pred             CCccccCccEEEEEEeCEEEEEEEeCCeE--EEecCCcEEEECCCCcEEEEEcCC
Q 021698          226 EPAHHHTFGHDLVVLEGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       226 ~p~H~H~~~e~vyVl~G~l~v~~~~~~~~--~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      .++|.|+..|+.||++|++.+.+..+++.  ..+++||.++||+|++|++.+.++
T Consensus        93 ~~~H~H~~~Ei~~Vl~G~g~~~i~~~d~~~~~~l~~GDli~IP~g~~H~~~~~~~  147 (179)
T 1zrr_A           93 LNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSE  147 (179)
T ss_dssp             HSCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSC
T ss_pred             ccceECChheEEEEEcceEEEEEEeCCEEEEEEECCCCEEEECCCCeEeeecCCC
Confidence            57899999999999999999832226776  459999999999999999987665

>1uij_A Beta subunit of beta conglycinin; double-stranded beta helix, SEED storage protein, sugar binding protein; 2.50A {Glycine max} SCOP: b.82.1.2 b.82.1.2 PDB: 1ipk_A 1ipj_A*

Probab=98.33  E-value=3.3e-06  Score=82.20  Aligned_cols=90  Identities=20%  Similarity=0.186  Sum_probs=67.3

Q ss_pred             CceeecCCceEEEeeeCCC---------eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC-C------------
Q 021698          196 NPVEMIPGGSMKIIRESPT---------SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK-G------------  252 (309)
Q Consensus       196 ~~~~~~pgg~~~il~~~~~---------~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~-~------------  252 (309)
                      .+....++|.+..+.....         ...+.+.||+..++|||+. .|++||++|++++++... +            
T Consensus       223 ~p~~~~~~G~~~~~~~~~~P~L~~l~is~a~~~l~~g~~~~pH~h~~A~Ei~~V~~G~~~v~~v~~~g~~~~~~~~~~~~  302 (416)
T 1uij_A          223 NPIYSNNFGKFFEITPEKNPQLRDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVGIKEQQQKQKQEEEPL  302 (416)
T ss_dssp             CCSEECSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEEC------------C
T ss_pred             CCCccCCCceEEEEChHHCccchhcCcceEEEEEcCCcEecceEcCCCcEEEEEEeeEEEEEEEcCCCcccccccccccc
Confidence            4444566777666543221         2578999999999999985 578899999999974332 1            


Q ss_pred             --eEE--EecCCcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698          253 --ERF--DLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       253 --~~~--~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~  285 (309)
                        +.+  .|++||.++||+|.+|...|.++..++...
T Consensus       303 ~~~~~~~~l~~Gdv~vvP~g~~h~~~n~~~~~~l~f~  339 (416)
T 1uij_A          303 EVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFLAFG  339 (416)
T ss_dssp             CEEEEEEEEETTCEEEECTTCCEEEEESSSEEEEEEE
T ss_pred             ceEEEEEEecCCcEEEECCCCeEEEEcCCCeEEEEEE
Confidence              356  899999999999999999999665554443

>2ea7_A 7S globulin-1; beta barrel, cupin superfamily, plant protein; 1.80A {Vigna angularis} PDB: 2eaa_A* 2cv6_A 1uik_A

Probab=98.30  E-value=3.4e-06  Score=82.61  Aligned_cols=89  Identities=18%  Similarity=0.200  Sum_probs=66.5

Q ss_pred             CCceeecCCceEEEeeeCCC---------eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCC------------
Q 021698          195 LNPVEMIPGGSMKIIRESPT---------SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKG------------  252 (309)
Q Consensus       195 ~~~~~~~pgg~~~il~~~~~---------~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~------------  252 (309)
                      ..+.....+|.++.+.....         ...+.+.||+..++|||+. .|++||++|++++++...+            
T Consensus       239 ~~p~~~~~gG~v~~~~~~~~P~L~~l~is~a~v~l~pG~m~~pH~hp~A~Ei~~V~~G~~~v~vv~~~g~~~~~~~~~~~  318 (434)
T 2ea7_A          239 SKPIYSNKFGRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVGLSDQQQQKQQEESL  318 (434)
T ss_dssp             SCCSEEETTEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEEEECCCCTTSCCCE
T ss_pred             CCCceeCCCcEEEEEChhhCccccccCcceEEEEEcCCeeeccEEcCCCCEEEEEEeeEEEEEEEecCccccccccccCc
Confidence            34444466777776633221         2578999999999999985 5788999999999743321            


Q ss_pred             --eEE--EecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          253 --ERF--DLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       253 --~~~--~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                        +.+  .|++||.++||+|.+|...|.++..++.
T Consensus       319 ~~r~~~~~l~~Gdv~vvP~g~~h~~~n~~~~~~v~  353 (434)
T 2ea7_A          319 EVQRYRAELSEDDVFVIPAAYPVAINATSNLNFFA  353 (434)
T ss_dssp             EEEEEEEEECTTCEEEECTTCCEEEEESSSEEEEE
T ss_pred             ceEEEEEEecCCcEEEECCCCeEEEEcCCCeEEEE
Confidence              155  8999999999999999999996655543

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=98.30  E-value=5.6e-06  Score=82.19  Aligned_cols=82  Identities=15%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             CceeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC--CeEE--EecCCc
Q 021698          196 NPVEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK--GERF--DLTVGD  261 (309)
Q Consensus       196 ~~~~~~pgg~~~il~~~--~~-------~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~--~~~~--~L~pGd  261 (309)
                      .++....+|.++.+...  |.       ...+.+.||+..++|||+. .|++||++|++++++...  .+.+  .|++||
T Consensus       332 ~di~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GD  411 (496)
T 3ksc_A          332 PDIYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQVVNCNGNTVFDGELEAGR  411 (496)
T ss_dssp             CSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEEETTCEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTC
T ss_pred             CCcccCCCeeEEEeCHHHCccccccceeEEEEEeeCCeEECCeeCCCCCEEEEEEeceEEEEEEeCCCcEEEEEEecCCe
Confidence            34555568888876432  21       2678999999999999986 589999999999985432  2344  499999


Q ss_pred             EEEECCCCcEEEEEcC
Q 021698          262 YLFTPAGDVHRVKYYE  277 (309)
Q Consensus       262 ~i~iP~g~~H~~~n~~  277 (309)
                      .++||.|.+|...|.+
T Consensus       412 V~v~P~G~~H~~~a~~  427 (496)
T 3ksc_A          412 ALTVPQNYAVAAKSLS  427 (496)
T ss_dssp             EEEECTTCEEEEEECS
T ss_pred             EEEECCCCEEEEEeCC
Confidence            9999999999877764

>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein, pisum sativum L., SEED storage protein, storage protein, plant protein; 2.61A {Pisum sativum}

Probab=98.28  E-value=1.5e-06  Score=86.29  Aligned_cols=70  Identities=13%  Similarity=0.142  Sum_probs=59.6

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--e----------------------EEEecCCcEEEECCCCcE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--E----------------------RFDLTVGDYLFTPAGDVH  271 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~----------------------~~~L~pGd~i~iP~g~~H  271 (309)
                      ..+++.||+..++|+|...+++||++|++.+.+...+  +                      .+.|++||.+.||+|++|
T Consensus        49 ~R~~i~pggl~lPh~~~A~ei~~V~qG~g~~G~v~p~~~e~f~~~~~~~~~~~~~~~d~~qk~~~l~~GDV~viPaG~~h  128 (496)
T 3ksc_A           49 SRATLQRNALRRPYYSNAPQEIFIQQGNGYFGMVFPGCPETFEEPQESEQGEGRRYRDRHQKVNRFREGDIIAVPTGIVF  128 (496)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC---------------CCCCCCEEEECTTEEEEECTTCEE
T ss_pred             EEEEecCCCEeCceEcCCCEEEEEEeCceEEEEEeCCCCccchhhhhcccccccccccchheeeccCCCCEEEECCCCcE
Confidence            5788999999999999999999999999998643332  3                      359999999999999999


Q ss_pred             EEEEcCCeEEEEEE
Q 021698          272 RVKYYEETEFFIKW  285 (309)
Q Consensus       272 ~~~n~~d~~~~i~~  285 (309)
                      ++.|.++..++++.
T Consensus       129 ~~~N~G~~~lv~v~  142 (496)
T 3ksc_A          129 WMYNDQDTPVIAVS  142 (496)
T ss_dssp             EEEECSSSCEEEEE
T ss_pred             EEEcCCCCCEEEEE
Confidence            99999988776543

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=98.28  E-value=4.1e-06  Score=82.58  Aligned_cols=81  Identities=15%  Similarity=0.130  Sum_probs=61.3

Q ss_pred             eeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC--CeEE--EecCCcEE
Q 021698          198 VEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK--GERF--DLTVGDYL  263 (309)
Q Consensus       198 ~~~~pgg~~~il~~~--~~-------~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~--~~~~--~L~pGd~i  263 (309)
                      +....+|.++.+...  |.       ...+.+.||+..++|||+. .|++||++|++++++...  .+.+  .|++||.+
T Consensus       299 ~~~~~gG~v~~v~~~~fP~L~~lgiS~a~v~L~pGgm~~PHwHp~A~Ei~yVl~G~~rv~~V~~~g~~~f~~~l~~GDV~  378 (466)
T 3kgl_A          299 VYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLL  378 (466)
T ss_dssp             EEETTTEEEEEECTTTCTTHHHHTCEEEEEEEETTEEEEEEEESSCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             cccCCCceEEEechhhCcccccCceeeEEEEeecCcEeeeeECCCCCEEEEEEeceEEEEEEeCCCcEEEEeEecCCcEE
Confidence            344567777766432  21       2678999999999999975 589999999999975432  2334  59999999


Q ss_pred             EECCCCcEEEEEcCCe
Q 021698          264 FTPAGDVHRVKYYEET  279 (309)
Q Consensus       264 ~iP~g~~H~~~n~~d~  279 (309)
                      +||.|.+|.. +.++.
T Consensus       379 v~P~G~~H~~-~ag~e  393 (466)
T 3kgl_A          379 SIPQGFSVVK-RATSE  393 (466)
T ss_dssp             EECTTCEEEE-EECSS
T ss_pred             EECCCCeEEE-EcCCC
Confidence            9999999987 55543

>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein, storage protein, plant protein; 2.98A {Brassica napus}

Probab=98.11  E-value=5.6e-06  Score=81.56  Aligned_cols=83  Identities=10%  Similarity=0.063  Sum_probs=64.4

Q ss_pred             cCCceEEEeeeCCC--------eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC---C-----------------
Q 021698          201 IPGGSMKIIRESPT--------SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK---G-----------------  252 (309)
Q Consensus       201 ~pgg~~~il~~~~~--------~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~---~-----------------  252 (309)
                      ..+|.+.++.....        ...+++.||+..++|+|+..+++||++|++.+.+...   .                 
T Consensus        23 se~G~~e~w~~~~~~L~~~gvs~~r~~i~p~Gl~lPh~~~a~e~~~V~~G~g~~G~v~pgc~et~~~~~~~~~~~~~~~~  102 (466)
T 3kgl_A           23 AEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFG  102 (466)
T ss_dssp             ETTEEEEECCTTSHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEEECTTCCCCEEECCSSCCCC-----
T ss_pred             CCCcEEEEECCCChhhccCCeEEEEEEECCCCEeCCeeCCCCeEEEEEeCeEEEEEecCCCcchhhcccccccccccccc
Confidence            35666666643221        2578899999999999999999999999998864322   0                 


Q ss_pred             ------------------------------------------eEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          253 ------------------------------------------ERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       253 ------------------------------------------~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                                                                +.+.|++||.++||+|++|++.|.+++.+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~l~~GDvi~iPaG~~~~~~N~g~e~L~~  175 (466)
T 3kgl_A          103 EGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVI  175 (466)
T ss_dssp             ------------------------------------CCEEESCEEEEETTEEEEECTTCEEEEECCSSSCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeeccccCCCEEEECCCCcEEEEeCCCCcEEE
Confidence                                                      1258999999999999999999999776554

>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein (globulins) family, SEED storage PR plant protein; 2.27A {Amaranthus hypochondriacus}

Probab=98.10  E-value=1.8e-05  Score=78.04  Aligned_cols=81  Identities=12%  Similarity=0.140  Sum_probs=62.0

Q ss_pred             CCceeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeC--CeEE--EecCC
Q 021698          195 LNPVEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTK--GERF--DLTVG  260 (309)
Q Consensus       195 ~~~~~~~pgg~~~il~~~--~~-------~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~--~~~~--~L~pG  260 (309)
                      ..++....+|.++.+...  |.       ...+.+.||+..++|||+. .|++||++|++++++...  .+.+  .|++|
T Consensus       296 ~~dv~~~~gG~v~~~~~~~fP~L~~lgiS~a~v~l~pGgm~~PHwHp~A~Ei~yV~~G~~~v~vV~~~g~~~f~~~l~~G  375 (465)
T 3qac_A          296 KADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGRGRIQIVNDQGQSVFDEELSRG  375 (465)
T ss_dssp             TCSEEETTTEEEEEECTTTSTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETT
T ss_pred             cCCcccCCCceEEEeCHHHCCCccccceeEEEEEecCCcEeeeEECCCCCEEEEEEeCCEEEEEEeCCCcEEEEEEecCC
Confidence            344555668888776432  21       2678999999999999986 588999999999975432  2344  49999


Q ss_pred             cEEEECCCCcEEEEE
Q 021698          261 DYLFTPAGDVHRVKY  275 (309)
Q Consensus       261 d~i~iP~g~~H~~~n  275 (309)
                      |.++||.|.+|...+
T Consensus       376 DVfvvP~g~~h~~~a  390 (465)
T 3qac_A          376 QLVVVPQNFAIVKQA  390 (465)
T ss_dssp             CEEEECTTCEEEEEE
T ss_pred             eEEEECCCcEEEEEc
Confidence            999999999998764

>2cav_A Protein (canavalin); vicilin, 7S SEED protein, domain duplication, swiss roll, PL protein; 2.00A {Canavalia ensiformis} SCOP: b.82.1.2 b.82.1.2 PDB: 2cau_A 1cau_B 1cav_B 1caw_B 1cax_B

Probab=98.09  E-value=2.1e-05  Score=77.16  Aligned_cols=87  Identities=17%  Similarity=0.168  Sum_probs=64.6

Q ss_pred             CceeecCCceEEEeeeCCC---------eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCC----------e--
Q 021698          196 NPVEMIPGGSMKIIRESPT---------SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKG----------E--  253 (309)
Q Consensus       196 ~~~~~~pgg~~~il~~~~~---------~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~----------~--  253 (309)
                      .+.-...+|.+..+.....         ...+.+.||+..++|||+. .|++||++|++++++....          +  
T Consensus       255 ~p~~~~~~G~v~~~~~~~fP~L~~l~is~~~v~l~pg~m~~PH~hp~A~ei~~V~~G~~~v~vv~~~~~~~~~~~g~~~~  334 (445)
T 2cav_A          255 DPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVELVGLEQQQQQGLESMQLR  334 (445)
T ss_dssp             CCSEESSSEEEEEECTTTCHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC-----------CCE
T ss_pred             CCCccCCCceEEEeChHHCcccccCCCceEEEEeeCCceeeeEECCCCcEEEEEEeeEEEEEEEeCCCcccccccCcceE
Confidence            3433456777766543221         2678999999999999986 5778999999999754332          2  


Q ss_pred             --EEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          254 --RFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       254 --~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                        +..|++||.++||.|.+|...|.++..++
T Consensus       335 ~~~~~l~~GdV~vvP~g~~h~~~n~~~~~~v  365 (445)
T 2cav_A          335 RYAATLSEGDIIVIPSSFPVALKAASDLNMV  365 (445)
T ss_dssp             EEEEEECTTCEEEECTTCCEEEEESSSEEEE
T ss_pred             EEEeEecCCcEEEEcCCcEEEEEcCCCeEEE
Confidence              45699999999999999999998654443

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=98.07  E-value=8.2e-06  Score=79.49  Aligned_cols=64  Identities=19%  Similarity=0.267  Sum_probs=52.6

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe--CCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT--KGERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~--~~~~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      ..+++.||+..++|+....+++||++|++.+.+..  +...+.|++||.+++|+|.+|++.|.++.
T Consensus        47 ~~~~l~p~gl~~Phh~~A~ei~yV~~G~g~~g~V~~~~~~~~~l~~GDv~~~P~G~~h~~~N~g~~  112 (418)
T 3s7i_A           47 VQIEAKPNTLVLPKHADADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDN  112 (418)
T ss_dssp             EEEEECTTEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSS
T ss_pred             EEEEecCCceeeeeeCCCCeEEEEEEeeEEEEEEecCCEEEEEecCCCEEEECCCCeEEEEecCCC
Confidence            56789999999999445566789999999986332  23578999999999999999999998743

>3d0j_A Uncharacterized protein CA_C3497; beta-barrel, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.53A {Clostridium acetobutylicum atcc 824}

Probab=98.02  E-value=1.2e-05  Score=66.79  Aligned_cols=62  Identities=16%  Similarity=0.098  Sum_probs=49.4

Q ss_pred             cCCccccCc-cEEEEEEeCEEEEEEEeC------CeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          225 VEPAHHHTF-GHDLVVLEGKKSVWNLTK------GERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       225 ~~p~H~H~~-~e~vyVl~G~l~v~~~~~------~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      -..+|.|.. .|+++|++|++++.+..+      ++...|+||+++.||.|+.|+.....++.++++=+
T Consensus        41 i~~~h~H~~tDE~Fivl~G~l~i~~rd~~~~~~~d~~V~l~~Ge~yvVPkGveH~p~a~~e~~vLLiEp  109 (140)
T 3d0j_A           41 IAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKDTKMMYVQD  109 (140)
T ss_dssp             CCEEEEESSCCEEEEEEESCEEEEEEEEETTEEEEEEEECCTTCCEEECTTCEEEEEECTTCEEEEEEE
T ss_pred             CHhhccCCCCCeEEEEEecEEEEEEecCcCCCCccceEEecCCCEEEeCCCccCcccCCCceEEEEEEe
Confidence            345799975 678889999999942211      45799999999999999999999988888776544

>3fz3_A Prunin; TREE NUT allergen, allergy, amandin, almond, 11S SEED storage protein, allergen; 2.40A {Prunus dulcis} PDB: 3ehk_A

Probab=97.97  E-value=1.4e-05  Score=79.63  Aligned_cols=85  Identities=9%  Similarity=0.094  Sum_probs=66.5

Q ss_pred             cCCceEEEeeeCCC--------eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC---------------------
Q 021698          201 IPGGSMKIIRESPT--------SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK---------------------  251 (309)
Q Consensus       201 ~pgg~~~il~~~~~--------~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~---------------------  251 (309)
                      ..+|.+..+.....        ...+++.|++..++|.|+..+++||++|++.+-+...                     
T Consensus        28 se~G~~e~w~~~~p~l~~~Gvs~~R~~i~p~Gl~lPh~~~a~el~yV~qG~g~~G~v~Pgcpet~~~~~~~~~~~~~~~~  107 (531)
T 3fz3_A           28 AEAGQIETWNFNQGDFQCAGVAASRITIQRNGLHLPSYSNAPQLIYIVQGRGVLGAVFSGCPETFEESQQSSQQGRQQEQ  107 (531)
T ss_dssp             ETTEEEEECCTTSHHHHHHTEEEEEEEECTTEEEEEEEESSCEEEEEEECEEEEEECCTTCCCCEECCCC----------
T ss_pred             cCCceEEEeCCCChhhccCcceEEEEEecCCCEeCCccCCCCeEEEEEECcEEEEEEcCCCccccccccccccccccccc
Confidence            35666666643221        2568899999999999999999999999998853221                     


Q ss_pred             ---------------------------------------------------------------CeEEEecCCcEEEECCC
Q 021698          252 ---------------------------------------------------------------GERFDLTVGDYLFTPAG  268 (309)
Q Consensus       252 ---------------------------------------------------------------~~~~~L~pGd~i~iP~g  268 (309)
                                                                                     .+.+.+++||++.||+|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~hqkv~~vr~GDviaiPaG  187 (531)
T 3fz3_A          108 EQERQQQQQGEQGRQQGQQEQQQERQGRQQGRQQQEEGRQQEQQQGQQGRPQQQQQFRQLDRHQKTRRIREGDVVAIPAG  187 (531)
T ss_dssp             ---------------------------------------------------------CCSCEESCCEEEETTEEEEECTT
T ss_pred             cccccccccccccccccccccccccccccccchhccccccccccccccccccccccccccccceeeecccCCcEEEECCC
Confidence                                                                           12467899999999999


Q ss_pred             CcEEEEEcCCeEEEEEE
Q 021698          269 DVHRVKYYEETEFFIKW  285 (309)
Q Consensus       269 ~~H~~~n~~d~~~~i~~  285 (309)
                      ++|++.|.++.++++++
T Consensus       188 ~~~w~yN~G~~~l~iv~  204 (531)
T 3fz3_A          188 VAYWSYNDGDQELVAVN  204 (531)
T ss_dssp             CCEEEECCSSSCEEEEE
T ss_pred             CeEEEEeCCCceEEEEE
Confidence            99999999998877655

>3eqe_A Putative cystein deoxygenase; YUBC, SR112, NESG, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacillus subtilis}

Probab=97.97  E-value=9.6e-05  Score=63.49  Aligned_cols=67  Identities=16%  Similarity=0.230  Sum_probs=54.8

Q ss_pred             EEEEEcCCCcCCccccCcc-EEEEEEeCEEEEEEEe--CC-----eEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFG-HDLVVLEGKKSVWNLT--KG-----ERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~-e~vyVl~G~l~v~~~~--~~-----~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .++...||..++.|-|... -++.||+|+++.+...  ++     +...+.+|+.++.|++.+|++.|.++...+
T Consensus        72 ~~l~W~PGq~S~iHdH~~s~~~~~VL~G~l~e~~y~~~~~~~~~~~~~~l~~G~~~~~~~~~iH~V~N~~~~~aV  146 (171)
T 3eqe_A           72 IVINIPPNKETTVHDHGQSIGCAMVLEGKLLNSIYRSTGEHAELSNSYFVHEGECLISTKGLIHKMSNPTSERMV  146 (171)
T ss_dssp             EEEEECTTCBCCEECCTTCEEEEEEEESEEEEEEEEECSSSEEEEEEEEEETTCEEEECTTCEEEEECCSSSCEE
T ss_pred             EEEEECCCCCcccccCCCceEEEEEEeeeEEEEEeecCCCceeecceEEeCCCcEEEeCCCCEEEEECCCCCCEE
Confidence            4678999999999999964 5667999999974221  33     478899999999999999999999875544

>3s7i_A Allergen ARA H 1, clone P41B; bicupin, vicilin, storage SEED protein; 2.35A {Arachis hypogaea} PDB: 3s7e_A 3smh_A

Probab=97.88  E-value=4.2e-05  Score=74.49  Aligned_cols=84  Identities=19%  Similarity=0.183  Sum_probs=62.5

Q ss_pred             CceeecCCceEEEeee--C-CC-------eEEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCC------------
Q 021698          196 NPVEMIPGGSMKIIRE--S-PT-------SAIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKG------------  252 (309)
Q Consensus       196 ~~~~~~pgg~~~il~~--~-~~-------~~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~------------  252 (309)
                      .|.....+|.+..+..  . |.       ...+++.||+..++|||+ ..+++||++|++++++...+            
T Consensus       236 ~p~~~n~~G~~~~~~~~~~~p~L~~~gis~~r~~l~pgg~~~PH~~p~A~ei~yV~~G~g~v~vv~~~~~~~~~~~~~~~  315 (418)
T 3s7i_A          236 EPDLSNNFGKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVRKEQQQRGRREEE  315 (418)
T ss_dssp             CCSEEETTEEEEEECSBTTBHHHHHHTCEEEEEEECTTEEEEEEEESSCEEEEEEEECCEEEEEEEEEEC----------
T ss_pred             CCceeCCCCeEEEechHHcchhhccCCeeEEEEEecCCceeCceecCCCCEEEEEEeCeEEEEEEeCCCccccccccccc
Confidence            3333356777665532  2 21       267899999999999996 56889999999998744321            


Q ss_pred             ---------------e-EEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          253 ---------------E-RFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       253 ---------------~-~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                                     . ...|++||.++||+|.+|+..|.++.
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~l~~GDV~vvP~G~~~~~~~~~~l  358 (418)
T 3s7i_A          316 EDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASSEL  358 (418)
T ss_dssp             ---------CCEEEEEEEEEECTTCEEEECTTCCEEEEESSCE
T ss_pred             cccccccccccccceEEEeeeCCCCEEEECCCCEEEEECCCCE
Confidence                           1 46789999999999999999887653

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=97.86  E-value=0.0001  Score=67.71  Aligned_cols=62  Identities=16%  Similarity=0.160  Sum_probs=49.7

Q ss_pred             CCCcCCccccCccEEEEEEeCEEEEEEEeCCe---EEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          222 AGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGE---RFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       222 pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~---~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      |+....+|+-+.+|++|+++|.+.+.+. +++   ...+++|+.+.+|+|++|+.....++..+++
T Consensus        40 pN~R~d~H~~~~dE~FyqlkG~m~l~~~-d~g~~~~V~i~eGemfllP~gv~HsP~r~~et~gLvi  104 (286)
T 2qnk_A           40 PNTRKDYHIEEGEEVFYQLEGDMVLRVL-EQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVV  104 (286)
T ss_dssp             CBCCCCEEECSSCEEEEEEESCEEEEEE-ETTEEEEEEECTTEEEEECTTCCEEEEECTTCEEEEE
T ss_pred             CCcCccCcCCCCCeEEEEEeCeEEEEEE-eCCceeeEEECCCeEEEeCCCCCcCCcccCCeEEEEE
Confidence            4455889933467889999999999743 434   7899999999999999999988888776654

>2gm6_A Cysteine dioxygenase type I; structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; 1.84A {Ralstonia eutropha} SCOP: b.82.1.19

Probab=97.85  E-value=0.00016  Score=63.97  Aligned_cols=64  Identities=25%  Similarity=0.347  Sum_probs=53.4

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe---------CCeEEEecCCcEEEECC--CCcEEEEEc-CCe
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT---------KGERFDLTVGDYLFTPA--GDVHRVKYY-EET  279 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~---------~~~~~~L~pGd~i~iP~--g~~H~~~n~-~d~  279 (309)
                      .++...||...|.|.|....++.|++|+++.+.+.         .++...+.+|+..++++  |..|++.|. ++.
T Consensus        82 ~~l~w~PGq~spiHdH~~~~~~~VL~G~l~e~~y~~~~~g~~l~~~~~~~l~~G~v~~~~~~~g~iH~V~N~~~~~  157 (208)
T 2gm6_A           82 VSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAYDDR  157 (208)
T ss_dssp             EEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred             EEEEeCCCcccCcccCCcceEEEEecccEEEEEeecCCCCccccccceEEeCCCCEEEECCCCCCeEEeccCCCCC
Confidence            56788999999999999888889999999874321         13468899999999999  999999998 444

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.68  E-value=0.00013  Score=68.25  Aligned_cols=72  Identities=21%  Similarity=0.338  Sum_probs=56.7

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEE--eCCeEEEecC-C---cEEEECCCCcEEEEEcCC-eEEEEEEcC
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNL--TKGERFDLTV-G---DYLFTPAGDVHRVKYYEE-TEFFIKWDG  287 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~--~~~~~~~L~p-G---d~i~iP~g~~H~~~n~~d-~~~~i~~~g  287 (309)
                      .+.+.+||....+|+|.. .|.++|++|+..+.+.  ..++.+.+.. |   +.++||+|..|.+.|.++ ...++.|..
T Consensus       275 ~ls~~~~g~~rg~h~h~~~~e~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~g~~h~~~n~~~~~~~~~~~~~  354 (369)
T 3st7_A          275 SVNISKPGITKGNHWHHTKNEKFLVVSGKGVIRFRHVNDDEIIEYYVSGDKLEVVDIPVGYTHNIENLGDTDMVTIMWVN  354 (369)
T ss_dssp             EEEEECTTCEEEEEECSSCCEEEEEEESEEEEEEEETTCCCCEEEEEETTBCCEEEECTTEEEEEEECSSSCEEEEEEES
T ss_pred             EEEEecCCceeccccccCcceEEEEEeeeEEEEEEcCCCCcEEEEEecCCcceEEEeCCCceEEeEEcCCCcEEEEEecC
Confidence            567789999999999975 5888999999888321  3567777777 8   899999999999999994 344455543

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=97.62  E-value=0.0002  Score=64.60  Aligned_cols=67  Identities=18%  Similarity=0.277  Sum_probs=52.7

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEE-EEEEc
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF-FIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~-~i~~~  286 (309)
                      .++++ .|.... -.+++.|..|||+|++++  ..+++.+.++|||+++||.|..|++...+.... ++.+.
T Consensus        50 G~~~~-~g~~~v-~~~p~dE~~~VleG~~~l--t~~g~~~~~~~Gd~~~ip~G~~~~w~~~~~~~~~y~~~~  117 (238)
T 3myx_A           50 GIVEF-GTALSV-EAYPYTEMLVMHRGSVTL--TSGTDSVTLSTGESAVIGRGTQVRIDAQPESLWAFCAST  117 (238)
T ss_dssp             EEEEE-CSEEEE-SSCSSEEEEEEEESEEEE--EETTEEEEEETTCEEEECTTCCEEEEECTTEEEEEEEEC
T ss_pred             EEEEe-cccccc-ccCCCcEEEEEEEeEEEE--ECCCeEEEEcCCCEEEECCCCEEEEEecCCeEEEEEecc
Confidence            46666 554432 234568999999999999  558999999999999999999999999887654 44444

>3o14_A Anti-ecfsigma factor, CHRR; cupin, structural genomics, joint center for structura genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Marinobacter aquaeolei}

Probab=97.56  E-value=0.00032  Score=62.66  Aligned_cols=81  Identities=20%  Similarity=0.302  Sum_probs=60.9

Q ss_pred             CCceEEEeeeCC--CeEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEE-cCC
Q 021698          202 PGGSMKIIRESP--TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY-YEE  278 (309)
Q Consensus       202 pgg~~~il~~~~--~~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n-~~d  278 (309)
                      +|.....|..+.  ...+++++||...+.|.| ..+++|||+|++.-    ++  -.+.+|+.+..|+|..|...+ ...
T Consensus       133 ~Gv~~~~L~~~~~E~v~l~r~~~G~~~~~~~h-gG~EilVL~G~~~d----~~--~~~~~GsWlR~P~gs~h~~~ag~~g  205 (223)
T 3o14_A          133 EGISTSLLHEDERETVTHRKLEPGANLTSEAA-GGIEVLVLDGDVTV----ND--EVLGRNAWLRLPEGEALSATAGARG  205 (223)
T ss_dssp             TTEEEEEEEECSSCEEEEEEECTTCEEEECCS-SCEEEEEEEEEEEE----TT--EEECTTEEEEECTTCCEEEEEEEEE
T ss_pred             CCeEEEEEecCCCcEEEEEEECCCCccCCCCC-CcEEEEEEEeEEEE----CC--ceECCCeEEEeCCCCccCcEECCCC
Confidence            455566665554  347899999999999999 77778999999764    34  478899999999999999988 334


Q ss_pred             eEEEEEEcCCcc
Q 021698          279 TEFFIKWDGRWD  290 (309)
Q Consensus       279 ~~~~i~~~g~~~  290 (309)
                      +.+++. .|++.
T Consensus       206 ~~i~~k-~ghl~  216 (223)
T 3o14_A          206 AKIWMK-TGHLR  216 (223)
T ss_dssp             EEEEEE-ESGGG
T ss_pred             eEEEEE-ecCCC
Confidence            444444 46553

>2pa7_A DTDP-6-deoxy-3,4-keto-hexulose isomerase; deoxysugar biosynthesis, S-layer biosynthesis, ketoisomerase; HET: TYD; 1.50A {Aneurinibacillus thermoaerophilus} SCOP: b.82.1.1 PDB: 2pae_A* 2pak_A* 2pam_A*

Probab=97.54  E-value=0.00029  Score=58.64  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=52.2

Q ss_pred             EcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCC---eEEEecCCc-EEEECCCCcEEEEEcC-CeEEEEEEcCCcc
Q 021698          220 FKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKG---ERFDLTVGD-YLFTPAGDVHRVKYYE-ETEFFIKWDGRWD  290 (309)
Q Consensus       220 l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~---~~~~L~pGd-~i~iP~g~~H~~~n~~-d~~~~i~~~g~~~  290 (309)
                      +++|....+|.|.. .|++++++|++.+.+ .++   +++.|.+.. .++||||++|.+.+.+ ++.++++.+++.+
T Consensus        42 ~~~g~~RG~H~Hk~~~q~li~l~Gs~~v~l-dDg~~~~~~~L~~~~~gL~IppgvWh~~~~~s~~avllvlas~~Yd  117 (141)
T 2pa7_A           42 TKGEEPRGFHAHKKLEQVLVCLNGSCRVIL-DDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSDCVMMVLASDYYD  117 (141)
T ss_dssp             CCSSCCEEEEEESSCCEEEEEEESCEEEEE-ECSSCEEEEEECCTTEEEEECTTCEEEEECCCTTCEEEEEESSCCC
T ss_pred             cCCCCEECcCcCCCceEEEEEEccEEEEEE-ECCcEEEEEEECCCCcEEEeCCCEEEEEEEcCCCeEEEEECCCCcC
Confidence            45788889999975 577889999999953 222   345665544 6999999999999997 5666677766544

>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}

Probab=97.44  E-value=0.00034  Score=56.38  Aligned_cols=63  Identities=14%  Similarity=0.163  Sum_probs=48.7

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      .+-...||.. .++.+...|++|+|+|+++++ ..+++...+++||++++|+|....+...+...
T Consensus        45 GvWe~tPG~~-~~~~~~~~E~~~iLeG~~~lt-~ddG~~~~l~aGD~~~~P~G~~gtWev~e~vr  107 (116)
T 3es4_A           45 AVWMAEPGIY-NYAGRDLEETFVVVEGEALYS-QADADPVKIGPGSIVSIAKGVPSRLEILSSFR  107 (116)
T ss_dssp             EEEEECSEEE-EECCCSEEEEEEEEECCEEEE-ETTCCCEEECTTEEEEECTTCCEEEEECSCEE
T ss_pred             EEEecCCcee-ECeeCCCcEEEEEEEeEEEEE-eCCCeEEEECCCCEEEECCCCeEEEEEeEEEe
Confidence            3456667643 344455569999999999995 34677799999999999999999998877543

>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}

Probab=97.38  E-value=0.00025  Score=63.82  Aligned_cols=56  Identities=5%  Similarity=0.009  Sum_probs=46.7

Q ss_pred             EEEcCCCc--CCccccCccEEEEEEeCEEEEEEEeCCe---EEEecCCcEEEECCCCcEEEEEc
Q 021698          218 VRFKAGSV--EPAHHHTFGHDLVVLEGKKSVWNLTKGE---RFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       218 v~l~pG~~--~p~H~H~~~e~vyVl~G~l~v~~~~~~~---~~~L~pGd~i~iP~g~~H~~~n~  276 (309)
                      +.+.....  .+.|+|..-+++||++|+++ .  ++++   .+.+.+||.+++|||.+|.+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~i~~v~~G~~~-~--i~~~~~~~~~l~~g~l~~i~p~~~h~~~~~   72 (276)
T 3gbg_A           12 YRMSKFDTYIFNNLYINDYKMFWIDSGIAK-L--IDKNCLVSYEINSSSIILLKKNSIQRFSLT   72 (276)
T ss_dssp             EEECTTCEEEEEEEECSSCEEEEESSSCEE-E--EETTTTEEEEECTTEEEEECTTCEEEEEEE
T ss_pred             hhhhcccchhccHhhhcceEEEEEecCceE-E--ECCccceeEEEcCCCEEEEcCCCceeeccc
Confidence            44444433  36799999999999999998 5  4677   99999999999999999999876

>3eln_A Cysteine dioxygenase type 1; peroxysulfenate, non-heme dioxygenases, Fe2+ metalloenzyme, taurine, thioether, iron, metal- binding; 1.42A {Rattus norvegicus} SCOP: b.82.1.19 PDB: 2gh2_A 2b5h_A 2atf_A* 2q4s_A 2ic1_A

Probab=97.22  E-value=0.0013  Score=57.83  Aligned_cols=62  Identities=19%  Similarity=0.184  Sum_probs=51.3

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEe--C--------CeEEEecCCcEEEE-CCCCcEEEEEcC
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLT--K--------GERFDLTVGDYLFT-PAGDVHRVKYYE  277 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~--~--------~~~~~L~pGd~i~i-P~g~~H~~~n~~  277 (309)
                      .++...||..+|.|-|.. .-++.||+|+++.+.+.  +        .....+.+|+..|+ |++-.|++.|.+
T Consensus        73 ~ll~W~PGq~SpiHDH~~s~g~i~VL~G~l~e~~y~~~~~~~~~l~~~~~~~l~~G~v~~~~~~~giH~V~N~s  146 (200)
T 3eln_A           73 MILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVS  146 (200)
T ss_dssp             EEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCC
T ss_pred             EEEEECCCCcCCCccCCCceEEEEEEeeeEEEEEeecCCCCcccccccceEEeCCCCEEEecCCCcEEEEECCC
Confidence            467889999999999994 67789999999874221  1        13688999999999 888899999998

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=97.21  E-value=0.0023  Score=58.31  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=55.2

Q ss_pred             EEEcCCCcCCccccCccEEE-EEEeCEEEEEEEeCCeEEEecCCcEEEECC--CCcEEEEEcCC---eEEEEEEcC
Q 021698          218 VRFKAGSVEPAHHHTFGHDL-VVLEGKKSVWNLTKGERFDLTVGDYLFTPA--GDVHRVKYYEE---TEFFIKWDG  287 (309)
Q Consensus       218 v~l~pG~~~p~H~H~~~e~v-yVl~G~l~v~~~~~~~~~~L~pGd~i~iP~--g~~H~~~n~~d---~~~~i~~~g  287 (309)
                      .++.||...++|.|+..|.+ ||++|+++.+ ..-+...+++|||+-|+.+  |+.|+-.|..+   ..++-+|..
T Consensus        69 ~~~~pg~gf~~HPHrg~EtvTyvl~G~~~H~-DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~n~~~~~~l~~lQlWi~  143 (256)
T 2vec_A           69 EVLAPGAAFQPRTYPKVDILNVILDGEAEYR-DSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLD  143 (256)
T ss_dssp             EEECTTCEEEEECCSSEEEEEEEEESEEEEE-ETTSCEEEEETTEEEEECCCTTCCEEEEECCSSSCEEEEEEEEE
T ss_pred             cccCCCCccCCcCCCCcEEEEEEEeeEEEEE-eCCCCEEEECCCeEEEEECCCCeEEEEEECCCCceEEEEEEEEe
Confidence            57889998999999998865 9999999985 4457889999999999965  57999999753   345555543

>3uss_A Putative uncharacterized protein; cupin, three histidine, non-heme iron, cysteine catabolism, oxidoreductase; 2.70A {Pseudomonas aeruginosa} SCOP: b.82.1.19

Probab=97.06  E-value=0.0037  Score=55.29  Aligned_cols=64  Identities=22%  Similarity=0.267  Sum_probs=52.1

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe---CC------eEEEecCCcEEEECCC--CcEEEEEcC-Ce
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT---KG------ERFDLTVGDYLFTPAG--DVHRVKYYE-ET  279 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~---~~------~~~~L~pGd~i~iP~g--~~H~~~n~~-d~  279 (309)
                      .++...||..+|.|-|...-++.|++|+++-+.+.   ++      +...+.+|+..+++++  ..|++.|.+ +.
T Consensus        76 ~~l~W~PGq~spiHDH~swg~~~Vl~G~l~e~~y~~~~~g~~~~~~~~~~l~~G~v~~~~p~~g~IH~V~N~~~d~  151 (211)
T 3uss_A           76 VSFVWGPGQITPVHDHRVWGLIGMLRGAEYSQPYAFDAGGRPHPSGARRRLEPGEVEALSPRIGDVHQVSNAFSDR  151 (211)
T ss_dssp             EEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESCSSS
T ss_pred             EEEEECCCCcCCCCCCCeeEEEEeeeceEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCCEEEEccCCCCC
Confidence            46788999999999999777888999998874221   22      2478999999999998  899999985 44

>3ejk_A DTDP sugar isomerase; YP_390184.1, structural genomics, JOIN for structural genomics, JCSG; HET: CIT; 1.95A {Desulfovibrio desulfuricans subsp}

Probab=97.00  E-value=0.0044  Score=53.22  Aligned_cols=68  Identities=15%  Similarity=-0.021  Sum_probs=50.7

Q ss_pred             EEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCC----------eEEEec---CCcEEEECCCCcEEEEEcCC--eEE
Q 021698          218 VRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKG----------ERFDLT---VGDYLFTPAGDVHRVKYYEE--TEF  281 (309)
Q Consensus       218 v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~----------~~~~L~---pGd~i~iP~g~~H~~~n~~d--~~~  281 (309)
                      ....+|....+|.|. ..++++|++|++...+ ++.          ..+.|.   +...+|||+|..|.+.+.++  +.+
T Consensus        58 s~s~~GvlRG~H~h~~q~klv~~v~G~v~dv~-vD~R~~SpTfg~~~~v~Ls~~~n~~~L~IP~G~aHgf~~lsd~~av~  136 (174)
T 3ejk_A           58 SEVLPRRVKAWKRHSLMTQLFAVPVGCIHVVL-YDGREKSPTSGRLAQVTLGRPDNYRLLRIPPQVWYGFAATGDTPALV  136 (174)
T ss_dssp             EEECBTCEEEEEEESSCCEEEEEEESEEEEEE-ECCCTTCTTTTCEEEEEEETTTBCEEEEECTTCEEEEEECTTSCEEE
T ss_pred             EECCCCCEECcEecCCCceEEEEEeeEEEEEE-EeCCCCCCCCCeEEEEEECCccCceEEEeCCCcEEEEEEccCCCEEE
Confidence            344678888999996 6788999999999852 332          356777   55799999999999999987  344


Q ss_pred             EEEEc
Q 021698          282 FIKWD  286 (309)
Q Consensus       282 ~i~~~  286 (309)
                      ++..+
T Consensus       137 ly~~s  141 (174)
T 3ejk_A          137 ANCTD  141 (174)
T ss_dssp             EEEES
T ss_pred             EEECC
Confidence            44433

>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}

Probab=96.99  E-value=0.007  Score=54.48  Aligned_cols=63  Identities=14%  Similarity=0.187  Sum_probs=48.9

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      .+....||...++ .|...|+.|||+|+++++ ..+++.+.+++||+++||+|..=.+...+...
T Consensus       170 GiW~~tpG~~~~~-~~~~~E~~~ILeG~v~lt-~~~G~~~~~~aGD~~~~P~G~~~tWev~e~vr  232 (238)
T 3myx_A          170 GVWDSTPYERISR-PHKIHELMNLIEGRVVLS-LENGSSLTVNTGDTVFVAQGAPCKWTSTGYVR  232 (238)
T ss_dssp             EEEEECCEEBCCE-ECSSCEEEEEEECCEEEE-ETTSCEEEECTTCEEEECTTCEEEEEESSCEE
T ss_pred             eEEEeCCCEEECC-cCCCCEEEEEEEeEEEEE-eCCCCEEEECCCCEEEECCCCEEEEEECccEE
Confidence            4566677764443 245679999999999995 34677899999999999999998887776543

>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics, montreal-kingston BA structural genomics initiative, BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*

Probab=96.93  E-value=0.0033  Score=56.34  Aligned_cols=80  Identities=23%  Similarity=0.378  Sum_probs=54.5

Q ss_pred             EEEEEcCCCcCCccccCcc-EEEEEEeC---EEEEEEE--------------eC--------CeEEEecCCcEEEECCCC
Q 021698          216 AIVRFKAGSVEPAHHHTFG-HDLVVLEG---KKSVWNL--------------TK--------GERFDLTVGDYLFTPAGD  269 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~-e~vyVl~G---~l~v~~~--------------~~--------~~~~~L~pGd~i~iP~g~  269 (309)
                      .++.+.+|+..|.|.|+.. |-+...-|   .+++++.              .+        +....|.||+++.++||+
T Consensus       109 K~Li~~~gQ~~P~H~H~~K~EdiinRgGG~L~v~Ly~~~~~~~~~~~~v~V~~DG~~~~~~aG~~i~L~PGESiTl~Pg~  188 (246)
T 3kmh_A          109 KIMHVRDAQVTPMHFHWRKREDIINRGGGNLIVELWNADSNEQTADSDITVVIDGCRQKHTAGSQLRLSPGESICLPPGL  188 (246)
T ss_dssp             EEEEECBTCEEEEEEESSCCEEEEEEEESCEEEEEEEBCTTSSBCCSCEEEEETTEEEEECTTCEEEECTTCEEEECTTE
T ss_pred             eEeeccCCCCCCcccCCCccccEEecCCCeEEEEEEecCCCccccCCCeEEecCCeEEEeCCCCEEEECCCCeEecCCCC
Confidence            3577889999999999864 55666666   4444321              11        234588999999999999


Q ss_pred             cEEEEEcCCe-EEE-----EEEcCCcc-cccch
Q 021698          270 VHRVKYYEET-EFF-----IKWDGRWD-MFFDE  295 (309)
Q Consensus       270 ~H~~~n~~d~-~~~-----i~~~g~~~-i~~~~  295 (309)
                      .|+|+..++. .++     .+.+..-| +|++|
T Consensus       189 ~H~F~ae~g~G~vligEVSt~NDD~~DN~F~~p  221 (246)
T 3kmh_A          189 YHSFWAEAGFGDVLVGEVSSVNDDDHDNHFLQP  221 (246)
T ss_dssp             EEEEEECTTSCCEEEEEEEECCCTTTSEEESSC
T ss_pred             EEEEEecCCCccEEEEEcccCcCCCCCccccCC
Confidence            9999998762 222     23334444 77766

>2qnk_A 3-hydroxyanthranilate 3,4-dioxygenase; bicupin fold, cupin barrel, extradiol dioxygenase, metalloen trytophan catabolism, NAD+ synthesis; HET: MSE; 1.60A {Homo sapiens} PDB: 3fe5_A

Probab=96.93  E-value=0.0038  Score=57.30  Aligned_cols=47  Identities=26%  Similarity=0.218  Sum_probs=43.3

Q ss_pred             cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          234 GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       234 ~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      +-|+++|+|+..|  .++++++.|++||++.||+++.|.+....++.++
T Consensus       227 d~wiWqLEGss~V--t~~~q~~~L~~~DsLLIpa~~~y~~~r~~gsv~L  273 (286)
T 2qnk_A          227 DVWLWQLEGSSVV--TMGGRRLSLAPDDSLLVLAGTSYAWERTQGSVAL  273 (286)
T ss_dssp             CEEEEEEESCEEE--EETTEEEEECTTEEEEECTTCCEEEEECTTCEEE
T ss_pred             cEEEEEEcCceEE--EECCeEEeccCCCEEEecCCCeEEEEecCCeEEE
Confidence            7789999999998  7899999999999999999999999988877765

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=96.81  E-value=0.0042  Score=56.00  Aligned_cols=68  Identities=21%  Similarity=0.195  Sum_probs=54.3

Q ss_pred             EEEcCCCcCCccccCccEE-EEEEeCEEEEEEEeCCeEEEecCCcEEEECC--CCcEEEEEcCC---eEEEEEEc
Q 021698          218 VRFKAGSVEPAHHHTFGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPA--GDVHRVKYYEE---TEFFIKWD  286 (309)
Q Consensus       218 v~l~pG~~~p~H~H~~~e~-vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~--g~~H~~~n~~d---~~~~i~~~  286 (309)
                      .++.||...++|.|+..|. .||++|+++-+ ..-+...+++|||.-|+.+  |+.|+-.|..+   ..++-+|.
T Consensus        46 d~i~pg~gf~~HPHrg~EtvTyvl~G~~~H~-DS~Gn~~~i~~GdvQ~MtAG~GI~HsE~~~~~~~~l~~lQlWv  119 (242)
T 1tq5_A           46 DVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ-DSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWI  119 (242)
T ss_dssp             EEECTTCEEEEEEECSCEEEEEEEESEEEEE-ESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEE
T ss_pred             ceeCCCCcCCCcCCCCcEEEEEEEEeEEEEE-eCCCCcEEECCCcEEEEECCCCcEEEEEcCCCCCeEEEEEEEE
Confidence            4778998899999999886 49999999985 4457889999999999955  58999988653   34555554

>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*

Probab=96.74  E-value=0.0052  Score=53.43  Aligned_cols=62  Identities=23%  Similarity=0.257  Sum_probs=46.6

Q ss_pred             cCCCcCCccccCccEEEEEEeCEEEEEEEeC-------------------------------------CeEEEecCCcEE
Q 021698          221 KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-------------------------------------GERFDLTVGDYL  263 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-------------------------------------~~~~~L~pGd~i  263 (309)
                      ++|+..+.|.....-+..++.|+-++.+.-.                                     .-..+|+|||.+
T Consensus       132 ~~gs~t~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~l~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~L  211 (235)
T 4gjz_A          132 PQGTISPLHQDPQQNFLVQVMGRKYIRLYSPQESGALYPHDTHLLHNTSQVDVENPDLEKFPKFAKAPFLSCILSPGEIL  211 (235)
T ss_dssp             CTTCEEEEECCSSEEEEEEEESCEEEEEECGGGGGGSCBCSSTTTTTBBSSCTTSCCTTTCGGGGGCCCEEEEECTTCEE
T ss_pred             CCCCCceeeeccccceEEEEeeeEeeEEcCcccccccccCcccccCccccccccCcchhhCccccCCCcEEEEECCCCEE
Confidence            4456667777777777788999888753211                                     125689999999


Q ss_pred             EECCCCcEEEEEcCCeEEE
Q 021698          264 FTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       264 ~iP~g~~H~~~n~~d~~~~  282 (309)
                      |||+|-.|.+.|.+++..+
T Consensus       212 yiP~gW~H~V~~l~~sisv  230 (235)
T 4gjz_A          212 FIPVKYWHYVRALDLSFSV  230 (235)
T ss_dssp             EECTTCEEEEEESSSEEEE
T ss_pred             EeCCCCcEEEEECCCEEEE
Confidence            9999999999999876544

>1nxm_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; jelly roll-like structure, beta sheet, isomerase; 1.30A {Streptococcus suis} SCOP: b.82.1.1 PDB: 1nyw_A* 1nzc_A* 2ixl_A*

Probab=96.41  E-value=0.014  Score=51.16  Aligned_cols=65  Identities=11%  Similarity=0.185  Sum_probs=50.4

Q ss_pred             cCCCcCCccccCccEEEEEEe-CEE-EEEEEeCC---------eEEEecCCcEEEECCCCcEEEEEcCCe-EEEEEEcC
Q 021698          221 KAGSVEPAHHHTFGHDLVVLE-GKK-SVWNLTKG---------ERFDLTVGDYLFTPAGDVHRVKYYEET-EFFIKWDG  287 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVl~-G~l-~v~~~~~~---------~~~~L~pGd~i~iP~g~~H~~~n~~d~-~~~i~~~g  287 (309)
                      .+|....+|.|.+.++++|++ |++ .+  .++.         ....|..+..+|||+|..|.+.+.++. .+.+..+.
T Consensus        68 ~~GvlRGlH~h~q~Klv~~~~~G~v~dV--~VDlR~SpTfg~~~~v~Ls~~~~L~IP~G~aHgf~~lsd~a~~~y~~s~  144 (197)
T 1nxm_A           68 RKNVLRGLHAEPWDKYISVADGGKVLGT--WVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLVND  144 (197)
T ss_dssp             ETTBEEEEEECSSCEEEEECSSCCEEEE--EEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEESS
T ss_pred             CCCCcceeeecccceEEEEcCCCEEEEE--EEECCCCCCCCeEEEEEeCCCcEEEeCCCeEEEEEeccCCeEEEEECCC
Confidence            567777899999999999999 995 44  3333         346788899999999999999999864 44444433

>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center for structural genomics, JCSG, protein structure INI PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.82.2.11

Probab=96.36  E-value=0.023  Score=53.53  Aligned_cols=57  Identities=25%  Similarity=0.320  Sum_probs=45.7

Q ss_pred             CCCcCCccccCccEEEEEEeCEEEEEEE-e------------------------------------CCeEEEecCCcEEE
Q 021698          222 AGSVEPAHHHTFGHDLVVLEGKKSVWNL-T------------------------------------KGERFDLTVGDYLF  264 (309)
Q Consensus       222 pG~~~p~H~H~~~e~vyVl~G~l~v~~~-~------------------------------------~~~~~~L~pGd~i~  264 (309)
                      .|+..++|.....-+++.+.|+-++++. -                                    .....+|.|||.+|
T Consensus       150 ~g~~~~~H~D~~dnfl~Qv~G~Krw~L~~~P~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~L~pGD~Ly  229 (342)
T 1vrb_A          150 NGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGTMLY  229 (342)
T ss_dssp             SSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTCEEE
T ss_pred             CCCCCCCeECChhcEEEEEEEEEEEEEecCCccccccCcccccccccccccccccchhhccccccCCceEEEECCCcEEE
Confidence            3777788988888888889998887644 1                                    02457999999999


Q ss_pred             ECCCCcEEEEEcCC
Q 021698          265 TPAGDVHRVKYYEE  278 (309)
Q Consensus       265 iP~g~~H~~~n~~d  278 (309)
                      ||+|-+|.+.+.++
T Consensus       230 iP~gwwH~v~s~~~  243 (342)
T 1vrb_A          230 LPRGLWHSTKSDQA  243 (342)
T ss_dssp             ECTTCEEEEECSSC
T ss_pred             eCCCccEEEEECCC
Confidence            99999999999853

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=96.04  E-value=0.034  Score=50.54  Aligned_cols=80  Identities=21%  Similarity=0.271  Sum_probs=57.0

Q ss_pred             ceEEEeeeCC---CeEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEE-EEEcC--
Q 021698          204 GSMKIIRESP---TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR-VKYYE--  277 (309)
Q Consensus       204 g~~~il~~~~---~~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~-~~n~~--  277 (309)
                      ++.++|.-..   .+..+.++|+...|.-.|...-++|||+|++.+    ++  +.|.++.+.++|+|+.-. ++..+  
T Consensus        79 gs~RlLs~~d~GaSTl~V~fpp~~~~P~Gi~~ad~E~fVL~G~i~~----G~--~~l~~h~Y~f~PaGV~~~~~kv~~~~  152 (303)
T 2qdr_A           79 GSRRLLTWHDSGASTSRVVLPPKFEAPSGIFTADLEIFVIKGAIQL----GE--WQLNKHSYSFIPAGVRIGSWKVLGGE  152 (303)
T ss_dssp             EEEEEEEECTTSCEEEEEEECTTCEECCBEESSCEEEEEEESEEEE----TT--EEECTTEEEEECTTCCBCCEEEETTS
T ss_pred             cceeecccCCCCcceEEEEecCCCCCCCcccccceEEEEEEeEEEe----CC--EEecCCceEEecCCCccCceeecCCC
Confidence            4556654321   147889999999888777776669999999998    33  778999999999999764 44434  


Q ss_pred             CeEEEEEEcCCc
Q 021698          278 ETEFFIKWDGRW  289 (309)
Q Consensus       278 d~~~~i~~~g~~  289 (309)
                      ..++++.-.|.+
T Consensus       153 g~~iL~fe~g~~  164 (303)
T 2qdr_A          153 EAEILWMENGSV  164 (303)
T ss_dssp             CEEEEEEECSSS
T ss_pred             CcEEEEEecCCc
Confidence            344444445555

>3bb6_A Uncharacterized protein YEAR; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Escherichia coli} SCOP: b.82.2.13

Probab=95.95  E-value=0.016  Score=47.20  Aligned_cols=62  Identities=16%  Similarity=0.218  Sum_probs=44.5

Q ss_pred             CCCcCCcc---c-cCc-cEEEEEEeCEEEEEEEeC------CeEEEecCCcEEEECCCCcEEEEEcC-CeEEEE
Q 021698          222 AGSVEPAH---H-HTF-GHDLVVLEGKKSVWNLTK------GERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFI  283 (309)
Q Consensus       222 pG~~~p~H---~-H~~-~e~vyVl~G~l~v~~~~~------~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~i  283 (309)
                      |++..+.|   . |.. ...+.|++|++++....+      ++....++|+..++||+.+|++...+ |..+.|
T Consensus        23 P~~ll~~H~~~~Tk~Gtwg~l~VL~G~L~f~~~~e~g~~~~~~~~l~~~~~~~~i~Pq~wH~Ve~lsdd~~f~l   96 (127)
T 3bb6_A           23 PAGIFERHLDKGTRPGVYPRLSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNI   96 (127)
T ss_dssp             CGGGGSSBCCTTCCTTEEEEEEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEE
T ss_pred             hHHHHhhccccCCCCCEEEEEEEEEeEEEEEEECCCCCcceeEEEEeCCCCceEECCCCcEEEEEcCCCEEEEE
Confidence            44555667   3 543 355679999999853222      35567899999999999999999854 666653

>3al5_A HTYW5, JMJC domain-containing protein C2ORF60; tRNA modification enzyme, unknown function; 2.50A {Homo sapiens} PDB: 3al6_A*

Probab=95.93  E-value=0.04  Score=51.68  Aligned_cols=83  Identities=28%  Similarity=0.252  Sum_probs=56.5

Q ss_pred             cCCCcCCccccCccEEEEEEeCEEEEEEEeC---------------------------------CeEEEecCCcEEEECC
Q 021698          221 KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK---------------------------------GERFDLTVGDYLFTPA  267 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~---------------------------------~~~~~L~pGd~i~iP~  267 (309)
                      ++|+..++|.....-++.++.|+-++++.-.                                 ....+|.|||.+|||+
T Consensus       175 ~~g~~~~~H~D~~~n~~~qv~G~K~w~L~pP~~~~~ly~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~L~pGD~LyiP~  254 (338)
T 3al5_A          175 SPGLQLWTHYDVMDNLLIQVTGKKRVVLFSPRDAQYLYLKGTKSEVLNIDNPDLAKYPLFSKARRYECSLEAGDVLFIPA  254 (338)
T ss_dssp             CTTCEEEEECCSSEEEEEECSSCEEEEEECGGGGGGGTEETTEESCCCSSSCCTTTCTTGGGCCEEEEEECTTCEEEECT
T ss_pred             CCCCCccceECCcccEEEEEEEEEEEEEECcccccccccCCCCcccccCCCcchhhCcccccCCCEEEEECCCCEEEECC
Confidence            4556667787777777778888877643210                                 2468899999999999


Q ss_pred             CCcEEEEEcCCeEEE-EEEcCC-------cccccchhHHHHHHH
Q 021698          268 GDVHRVKYYEETEFF-IKWDGR-------WDMFFDEDLETAKKA  303 (309)
Q Consensus       268 g~~H~~~n~~d~~~~-i~~~g~-------~~i~~~~~~~~a~~~  303 (309)
                      |-.|.+.+.+++..+ +.|...       .++|-++|+..++++
T Consensus       255 gWwH~v~~l~~sisvn~~~~~~~~~~~~~~~~y~~~dl~~~~~~  298 (338)
T 3al5_A          255 LWFHNVISEEFGVGVNIFWKHLPSECYDKTDTYGNKDPTAASRA  298 (338)
T ss_dssp             TCEEEEEESSCEEEEEEEECSSCGGGSCTTCSSSCSCCHHHHHH
T ss_pred             CCeEEEeeCCCEEEEEEEecCCccccCCcccccccCCchHHHHH
Confidence            999999999866544 345432       244555666555443

>1ep0_A DTDP-6-deoxy-D-XYLO-4-hexulose 3,5-epimerase; racemase, DTDP-4-dehydrorhamnose epimerase, structural genomics, PSI; 1.50A {Methanothermobacterthermautotrophicus} SCOP: b.82.1.1 PDB: 1epz_A*

Probab=95.90  E-value=0.03  Score=48.45  Aligned_cols=65  Identities=17%  Similarity=0.118  Sum_probs=46.0

Q ss_pred             cCCCcCCcccc---CccEEEEEEeCEEE-EEEEeCC--------eEEEecC--CcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698          221 KAGSVEPAHHH---TFGHDLVVLEGKKS-VWNLTKG--------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       221 ~pG~~~p~H~H---~~~e~vyVl~G~l~-v~~~~~~--------~~~~L~p--Gd~i~iP~g~~H~~~n~~d~~~~i~~  285 (309)
                      .+|....+|.|   ...++++|++|++. +.+.+..        ..+.|.+  +..+|||+|..|.+.+.++...++.+
T Consensus        56 ~~GvlRGlH~q~p~~q~klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y~  134 (185)
T 1ep0_A           56 VRGVLRGLHFQREKPQGKLVRVIRGEIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYK  134 (185)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             cCCeEecceecCCccccEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEEe
Confidence            46777789988   67889999999964 4212111        2245554  57899999999999999975444433

>3ryk_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, STRU genomics, infectious diseases; HET: TYD; 1.63A {Bacillus anthracis str}

Probab=95.83  E-value=0.035  Score=48.80  Aligned_cols=62  Identities=16%  Similarity=0.225  Sum_probs=46.1

Q ss_pred             cCCCcCCccccC----ccEEEEEEeCEEEEEEEeC----C------eEEEecC--CcEEEECCCCcEEEEEcCCeEEEE
Q 021698          221 KAGSVEPAHHHT----FGHDLVVLEGKKSVWNLTK----G------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVl~G~l~v~~~~~----~------~~~~L~p--Gd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      .+|....+|.|.    +.++++|++|++.-. .++    .      ..+.|.+  +..+|||+|..|.+.+.++...++
T Consensus        78 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~DV-~VDlR~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHGF~~Lsd~a~~~  155 (205)
T 3ryk_A           78 EAGTIRGLHFQKNPKAQTKLIQVMQGAIYDV-IVDLRKDSPTFKQWRGYILSADNHRQLLVPKGFAHGFCTLVPHTIVM  155 (205)
T ss_dssp             STTBEEEEEEECTTSCCCEEEEEEESEEEEE-EEECCTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSSEEEE
T ss_pred             CCCcEeEeEecCCCCCceEEEEEeCCeEEEE-EEECCCCCCCCCeEEEEEecCCCCCEEEeCCCceEEEEEcCCCEEEE
Confidence            577778899884    688999999996432 232    1      3456765  689999999999999998654443

>2ixk_A DTDP-4-dehydrorhamnose 3,5-epimerase; isomerase, lipopolysaccharide biosynthesis, epimerise, epimerize; HET: TDO; 1.7A {Pseudomonas aeruginosa} PDB: 2ixi_A* 2ixh_A* 1rtv_A* 2ixj_A*

Probab=95.81  E-value=0.033  Score=48.16  Aligned_cols=63  Identities=19%  Similarity=0.156  Sum_probs=45.9

Q ss_pred             cCCCcCCcccc---CccEEEEEEeCEEE-EEEEeCC--------e--EEEecC--CcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          221 KAGSVEPAHHH---TFGHDLVVLEGKKS-VWNLTKG--------E--RFDLTV--GDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H---~~~e~vyVl~G~l~-v~~~~~~--------~--~~~L~p--Gd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      .+|....+|.|   .+.++++|++|++. +  .++.        +  ...|.+  +..+|||+|..|.+.+.++...++.
T Consensus        57 ~~GvlRG~H~q~p~~q~Klv~vv~G~v~dV--~vD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y  134 (184)
T 2ixk_A           57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDV--AVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLY  134 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEE--EEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEE
T ss_pred             CCCceeeEEeCCCCCcCEEEEEeCCeEEEE--EEECCCCCCCCCeEEEEEeCCCcCCEEEeCCCeEEEEEEcCCCEEEEE
Confidence            46777789988   57789999999964 4  2222        2  245554  5789999999999999997544443


Q ss_pred             E
Q 021698          285 W  285 (309)
Q Consensus       285 ~  285 (309)
                      +
T Consensus       135 ~  135 (184)
T 2ixk_A          135 K  135 (184)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3, 5-epimerase; jelly roll-like topology, flattened barrel, isomerase; 1.90A {Sulfolobus tokodaii} SCOP: b.82.1.1 PDB: 2b9u_A

Probab=95.48  E-value=0.036  Score=48.39  Aligned_cols=64  Identities=19%  Similarity=0.192  Sum_probs=46.7

Q ss_pred             cCCCcCCccccC----ccEEEEEEeCEEEEEEEeCC----------eEEEecC--CcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          221 KAGSVEPAHHHT----FGHDLVVLEGKKSVWNLTKG----------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVl~G~l~v~~~~~~----------~~~~L~p--Gd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      .+|....+|.|.    ..++++|++|++... .++.          ..+.|.+  +..+|||+|..|.+.+.++...++.
T Consensus        73 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV-~VDlR~~SpTfG~~~~v~Ls~en~~~L~IP~G~aHgf~~lsd~a~~ly  151 (196)
T 1wlt_A           73 RKGVVRGLHYQRTPKEQGKIIFVPKGRILDV-AVDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIYF  151 (196)
T ss_dssp             CTTBEEEEEEECTTSCCEEEEEEEESEEEEE-EEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEEE
T ss_pred             CCCcceeEEccCCCCCCceEEEEeCCEEEEE-EEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEE
Confidence            467777899886    578999999998431 2322          2346664  6899999999999999997555444


Q ss_pred             E
Q 021698          285 W  285 (309)
Q Consensus       285 ~  285 (309)
                      +
T Consensus       152 ~  152 (196)
T 1wlt_A          152 I  152 (196)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=95.47  E-value=0.062  Score=49.23  Aligned_cols=68  Identities=19%  Similarity=0.186  Sum_probs=54.3

Q ss_pred             EEcCCCcCCccccCccEEE-EEEeCEEEEEEEeCCeEEEecCCcEEEECCC--CcEEEEEcCC--eEEEEEEcC
Q 021698          219 RFKAGSVEPAHHHTFGHDL-VVLEGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEE--TEFFIKWDG  287 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~~e~v-yVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g--~~H~~~n~~d--~~~~i~~~g  287 (309)
                      ...++...++|.|+..|.+ ||++|+++-+ ..-+..-.+.|||.-|+-+|  +.|+-.|..+  ..++-+|..
T Consensus        45 ~~~~~~gf~~HPHrg~EtVTyvl~G~~~H~-DS~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlWvn  117 (277)
T 2p17_A           45 DIFERGTFDVHPHRGIETVTYVISGELEHF-DSKAGHSTLGPGDVQWMTAGRGVVHKEDPASGSTVHSLQLWVN  117 (277)
T ss_dssp             EEECTTCCCCEEECSEEEEEEEEESCEEEE-ETTTEEEEECTTCEEEEECTTCEEEEEEECTTCCEEEEEEEEE
T ss_pred             CCCCCCCCCCCCCCCcEEEEEEEEeEEEEe-eCCCCceEECCCeEEEEeCCCCEEEEeecCCCCCEEEEEEEee
Confidence            4467778899999998865 9999999985 55678889999999999986  6899888754  345556653

>1yud_A Hypothetical protein SO0799; SOR12, Q8E1N8, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Shewanella oneidensis} SCOP: b.82.1.16

Probab=95.41  E-value=0.2  Score=42.69  Aligned_cols=62  Identities=19%  Similarity=0.320  Sum_probs=47.4

Q ss_pred             eEEEEEcCCCcCCccccCccEEEEEEeCE-EEEEEEe-CCeEEE------ecCCcE--EEECCCCcEEEEEc
Q 021698          215 SAIVRFKAGSVEPAHHHTFGHDLVVLEGK-KSVWNLT-KGERFD------LTVGDY--LFTPAGDVHRVKYY  276 (309)
Q Consensus       215 ~~~v~l~pG~~~p~H~H~~~e~vyVl~G~-l~v~~~~-~~~~~~------L~pGd~--i~iP~g~~H~~~n~  276 (309)
                      +.++-+.+|..+.+|+....|+.+...|. +++.+.. +++...      +..|+.  ++||+|+++..++.
T Consensus        51 ~IYfLL~~g~~S~~HRv~sdEiW~~~~G~pL~l~l~~~dg~~~~~~LG~dv~~Ge~pQ~vVP~G~wqaa~~~  122 (170)
T 1yud_A           51 SIYFLLRTGEVSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSAMN  122 (170)
T ss_dssp             EEEEEEETTCCEEEEECSSCEEEEEEEESCEEEEEECTTSCEEEEEESSCTTTTEESCEEECTTCEEEEEES
T ss_pred             EEEEEECCCCCCeeEEcCCCEEEEEEcCCCEEEEEEcCCCCEEEEEeCCCcccCceeEEEECCCCEEEEEEC
Confidence            36788899998888888888888889996 4664222 444443      567888  99999999999988

>1dgw_X Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_X

Probab=95.38  E-value=0.017  Score=43.08  Aligned_cols=33  Identities=21%  Similarity=0.201  Sum_probs=28.6

Q ss_pred             EEEEEcCCCcCCccccCcc-EEEEEEeCEEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFG-HDLVVLEGKKSVWN  248 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~-e~vyVl~G~l~v~~  248 (309)
                      ..+.+.+|+..++|||+.. |++||++|++.+++
T Consensus        39 ~r~~l~~gg~~~PH~hprA~ei~~V~~G~~~v~~   72 (79)
T 1dgw_X           39 NCLQMNEGALFVPHYNSRATVILVANEGRAEVEL   72 (79)
T ss_dssp             EEEEECTTCEEEEEEESSCEEEEEEEESCEEEEE
T ss_pred             EEEEEcCCcCcCCccCCCCcEEEEEEeceEEEEE
Confidence            5678999999999999865 77899999999963

>1dzr_A DTDP-4-dehydrorhamnose 3\,5-epimerase; isomerase, 3\,5-hexulose epimerase; 2.17A {Salmonella typhimurium} SCOP: b.82.1.1 PDB: 1dzt_A*

Probab=95.21  E-value=0.14  Score=44.14  Aligned_cols=64  Identities=20%  Similarity=0.200  Sum_probs=45.1

Q ss_pred             cCCCcCCcccc----CccEEEEEEeCEEE-EEEEeC------C--eEEEecC--CcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          221 KAGSVEPAHHH----TFGHDLVVLEGKKS-VWNLTK------G--ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H----~~~e~vyVl~G~l~-v~~~~~------~--~~~~L~p--Gd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      .+|....+|.|    ...++++|++|++. +.+...      +  ..+.|.+  +..+|||+|..|.+.+.++...++.
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV~VD~R~~SpTfg~~~~~~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~y  133 (183)
T 1dzr_A           55 KKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLY  133 (183)
T ss_dssp             ETTBEEEEEEECGGGCCCEEEEEEESEEEEEEEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEE
T ss_pred             CCCeeeeeEccCCCCCCcEEEEEeCCeEEEEEEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeEEEEEEcCCCeEEEE
Confidence            46777789988    56789999999964 421111      1  2245554  5789999999999999997554443

>1oi6_A PCZA361.16; epimerase, vancomycin group antibiotic, EVAD, isomerase; HET: TMP; 1.4A {Amycolatopsis orientalis} SCOP: b.82.1.1 PDB: 1ofn_A* 1wa4_A

Probab=95.13  E-value=0.18  Score=44.21  Aligned_cols=62  Identities=16%  Similarity=0.146  Sum_probs=44.8

Q ss_pred             cCCCcCCccccC----ccEEEEEEeCEEEEEEEeCC----------eEEEecC--CcEEEECCCCcEEEEEcCCeEEEE
Q 021698          221 KAGSVEPAHHHT----FGHDLVVLEGKKSVWNLTKG----------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVl~G~l~v~~~~~~----------~~~~L~p--Gd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      .+|....+|.|.    +.++++|++|++... .++.          ..+.|.+  +..+|||+|..|.+.+.++...++
T Consensus        55 ~~GvlRGlH~q~~p~~q~Klv~vv~G~v~dV-~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgf~~lsd~a~~~  132 (205)
T 1oi6_A           55 KRGVVRGIHYTVTPPGTAKYVYCARGKAMDI-VIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVMS  132 (205)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESCEEEE-EECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEEE
T ss_pred             CCCeEeeeeccCCCCCCceEEEEeCCEEEEE-EEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEccCCeEEE
Confidence            467777899885    588999999996421 3332          2356665  478999999999999998644433

>1upi_A DTDP-4-dehydrorhamnose 3,5-epimerase; rhamnose pathway, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: CME; 1.7A {Mycobacterium tuberculosis} SCOP: b.82.1.1 PDB: 2ixc_A* 1pm7_A*

Probab=95.00  E-value=0.22  Score=44.34  Aligned_cols=62  Identities=13%  Similarity=0.148  Sum_probs=45.3

Q ss_pred             cCCCcCCccccC----ccEEEEEEeCEEE-EEEEeCC----------eEEEecC--CcEEEECCCCcEEEEEcCCeEEEE
Q 021698          221 KAGSVEPAHHHT----FGHDLVVLEGKKS-VWNLTKG----------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVl~G~l~-v~~~~~~----------~~~~L~p--Gd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      .+|....+|.|.    +.++++|++|++. +  .++.          ..+.|.+  ...+|||+|..|.+.+.++...++
T Consensus        74 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV--~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~vl  151 (225)
T 1upi_A           74 SAGVLRGLHFAQLPPSQAKYVTCVSGSVFDV--VVDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTVM  151 (225)
T ss_dssp             CTTBEEEEEEECTTTCCCEEEEEEESEEEEE--EECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEEE
T ss_pred             CCCeEeeeeccCCCCCcceEEEEeCCeEEEE--EEECCCCCCCCCcEEEEEecCCCCcEEEeCCCeeEEEEEcCCCEEEE
Confidence            467777899885    5889999999974 4  3332          2245555  478999999999999998654443


Q ss_pred             E
Q 021698          284 K  284 (309)
Q Consensus       284 ~  284 (309)
                      .
T Consensus       152 y  152 (225)
T 1upi_A          152 Y  152 (225)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2xdv_A MYC-induced nuclear antigen; ribosome biogenesis, nuclear protein; HET: OGA; 2.57A {Homo sapiens}

Probab=94.98  E-value=0.14  Score=49.99  Aligned_cols=57  Identities=30%  Similarity=0.401  Sum_probs=44.6

Q ss_pred             cCCCcC-CccccCccEEEEEEeCEEEEEEEeC-------------------CeEEEecCCcEEEECCCCcEEEEEcC
Q 021698          221 KAGSVE-PAHHHTFGHDLVVLEGKKSVWNLTK-------------------GERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       221 ~pG~~~-p~H~H~~~e~vyVl~G~l~v~~~~~-------------------~~~~~L~pGd~i~iP~g~~H~~~n~~  277 (309)
                      ++|+.. ++|+....-+++.+.|+-++++...                   ....+|.|||.+|||+|.+|..++.+
T Consensus       147 ~~g~~g~~~H~D~~dvf~~Qv~G~Krw~l~~p~~pl~~~~s~d~~~~~~~~~~~~~L~pGD~LYiP~g~~H~~~s~~  223 (442)
T 2xdv_A          147 PAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVPLAREYSVEAEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPA  223 (442)
T ss_dssp             CTTCBCSCSEECSSEEEEEEEESCEEEEEECCSSTTCSSCEECCTTTSCSCSEEEEECTTCEEEECTTCEEEEECCS
T ss_pred             CCCCCCccceECCcceEEEEEEeEEEEEEccCCCCccccCCCCchhhcCCcceEEEECCCcEEEECCCceEEEEecC
Confidence            445443 7898888888889999888753222                   13689999999999999999999875

>2c0z_A NOVW; isomerase, epimerase, antibiotic biosynthesis, RMLC-like cupin; 1.60A {Streptomyces sphaeroides} SCOP: b.82.1.1

Probab=94.91  E-value=0.13  Score=45.45  Aligned_cols=63  Identities=13%  Similarity=0.026  Sum_probs=45.5

Q ss_pred             cCCCcCCccccC----ccEEEEEEeCEEEEEEEeCC----------eEEEecC--CcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          221 KAGSVEPAHHHT----FGHDLVVLEGKKSVWNLTKG----------ERFDLTV--GDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVl~G~l~v~~~~~~----------~~~~L~p--Gd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      .+|....+|.|.    +.++++|++|++... .++.          ..+.|.+  +..+|||+|..|.+.+.++...++.
T Consensus        63 ~~GvlRGlH~q~~p~~q~KlV~vv~G~v~dV-~VDlR~~SpTfG~~~~v~Ls~~n~~~L~IP~G~aHgF~~Lsd~a~~ly  141 (216)
T 2c0z_A           63 VRGVVRGIHFVDVPPGQAKYVTCVRGAVFDV-VVDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLCY  141 (216)
T ss_dssp             ETTBEEEEEEECTTTCCCEEEEEEESEEEEE-EEECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEE
T ss_pred             CCCcEEcCEecCCCCCcceEEEEeCCeEEEE-EEECCCCCCCCCeEEEEEecCCCCCEEEeCCCeeEEEEEcCCCeEEEE
Confidence            467777899886    588999999996421 2222          2245555  4789999999999999997554443

>3dl3_A Tellurite resistance protein B; X-RAY NESG VFR98 Q5E3X2_VIBF1, structural genomics, PSI-2, protein structure initiative; 2.30A {Vibrio fischeri ES114} SCOP: b.82.2.13

Probab=94.86  E-value=0.087  Score=42.35  Aligned_cols=52  Identities=17%  Similarity=0.380  Sum_probs=40.3

Q ss_pred             CccEE--EEEEeCEEEEEEEeC------CeEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          232 TFGHD--LVVLEGKKSVWNLTK------GERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       232 ~~~e~--vyVl~G~l~v~~~~~------~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      ..+.|  +-|++|++++....+      .+...+.+|+..+|||..+|++...+|..+.|
T Consensus        35 K~GtWgkL~Vl~G~Lkf~~~~e~~~~~~~~~~~~~~~~~~~i~Pq~wHrVe~sdD~~f~l   94 (119)
T 3dl3_A           35 AVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQFNI   94 (119)
T ss_dssp             CTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEEEE
T ss_pred             CCcEEEEEEEEEeEEEEEEEcCCCCCcccEEEEeCCCCCceeCCCceEEEEECCCeEEEE
Confidence            34455  469999999953221      35678999999999999999999667888864

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=94.43  E-value=0.1  Score=48.10  Aligned_cols=68  Identities=19%  Similarity=0.115  Sum_probs=54.5

Q ss_pred             EEEcCCCcCCccccCccEEE-EEE-eCEEEEEEEeCCeEEEecCCcEEEECCC--CcEEEEEcCC--eEEEEEEc
Q 021698          218 VRFKAGSVEPAHHHTFGHDL-VVL-EGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEE--TEFFIKWD  286 (309)
Q Consensus       218 v~l~pG~~~p~H~H~~~e~v-yVl-~G~l~v~~~~~~~~~~L~pGd~i~iP~g--~~H~~~n~~d--~~~~i~~~  286 (309)
                      ..+.++...++|.|+..|.+ ||+ +|+++-+ ..-+..-.+.|||.-|+-+|  +.|+-.|..+  ..++-+|.
T Consensus        45 ~~~~~~~Gf~~HPHrg~EtVTyvl~~G~~~H~-DS~Gn~~~i~~GdvQwMtAG~GI~HsE~~~~~~~~~~lQlWv  118 (290)
T 1j1l_A           45 FKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE-DFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWV  118 (290)
T ss_dssp             EEECTTCBEEEEEEBSEEEEEEECSSSCEEEE-ETTSCEEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEE
T ss_pred             cccCCCCCCCCCCCCCeEEEEEECcceEEEEe-eCCCCceEECCCcEEEEeCCCCEEEEeEcCCCCCEEEEEEEe
Confidence            46778877899999998865 999 9999986 55677889999999999976  6799888653  45555665

>2qdr_A Uncharacterized protein; double-stranded beta-helix fold, structural genomics, joint for structural genomics, JCSG; HET: MSE EPE; 2.60A {Nostoc punctiforme}

Probab=94.34  E-value=0.17  Score=45.98  Aligned_cols=72  Identities=15%  Similarity=0.106  Sum_probs=55.4

Q ss_pred             eEEEeeeCCC---eEEEEEcCCCcC-CccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEE--------
Q 021698          205 SMKIIRESPT---SAIVRFKAGSVE-PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR--------  272 (309)
Q Consensus       205 ~~~il~~~~~---~~~v~l~pG~~~-p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~--------  272 (309)
                      ..++|+.++.   ..++++.||... ..-.|+..|++|+|+|.+.             .|++.+-|++++|.        
T Consensus       206 ~~K~Lr~D~~G~~TrLlr~~Pg~dt~~v~iHdy~EEvY~LeG~~d-------------~G~Y~~RPpg~~HGps~~~~pp  272 (303)
T 2qdr_A          206 NKKWLRKDINGGGVWLLAILPHFDNKYQMIQPYNEEGYCLTGYCD-------------VGDYRIVKDHYWYCPSFSTLPR  272 (303)
T ss_dssp             EEEEEEECTTSCEEEEEEECSSEECCSEEEECSCEEEEEEEEEEE-------------ETTEEEETTEEEEECTTEEECC
T ss_pred             HHHHhhcCCCCCeEEEEEECCCCCCCCceeeccceeEEEEeeecc-------------CceeeEcCCCCccCccccCCCC
Confidence            4567776654   367899999765 4567999999999999763             39999999999998        


Q ss_pred             EEEcCCeEEEEEEcCCc
Q 021698          273 VKYYEETEFFIKWDGRW  289 (309)
Q Consensus       273 ~~n~~d~~~~i~~~g~~  289 (309)
                      +.....+.+++..++-.
T Consensus       273 f~Se~G~l~fvR~DgdL  289 (303)
T 2qdr_A          273 HITDDGGLFFVRVDRDL  289 (303)
T ss_dssp             EEESSCEEEEEEESSCT
T ss_pred             cCcCCceEEEEEeCccc
Confidence            45555677788887744

>4hn1_A Putative 3-epimerase in D-allose pathway; 3'-monoepimerase, natural product, deoxysugar, chalcomycin, mycinose, cupin fold; HET: TYD THM; 1.60A {Streptomyces bikiniensis} PDB: 4hmz_A* 4hn0_A

Probab=93.98  E-value=0.53  Score=41.14  Aligned_cols=65  Identities=9%  Similarity=0.057  Sum_probs=47.1

Q ss_pred             cCCCcCCccccC----ccEEEEEEeCEEEEEEEeCC----------eEEEecC--CcEEEECCCCcEEEEEcCC-eEEEE
Q 021698          221 KAGSVEPAHHHT----FGHDLVVLEGKKSVWNLTKG----------ERFDLTV--GDYLFTPAGDVHRVKYYEE-TEFFI  283 (309)
Q Consensus       221 ~pG~~~p~H~H~----~~e~vyVl~G~l~v~~~~~~----------~~~~L~p--Gd~i~iP~g~~H~~~n~~d-~~~~i  283 (309)
                      .+|....+|.|.    +..++.|++|++.-. .+|-          ....|.+  +..+|||+|..|.+.+.++ +.+.+
T Consensus        52 ~~GvlRGlH~q~~p~~q~KlV~~~~G~v~DV-~VDlR~~SpTfG~w~~v~Ls~en~~~l~IP~GfaHGF~~Lsd~a~~~Y  130 (201)
T 4hn1_A           52 HRGALRGINYTEIPPGQAKYSVCVRGAGLDV-VVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATLVF  130 (201)
T ss_dssp             CTTBEEEEEEECSSSCCCEEEEEEESEEEEE-EECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSTTEEEEE
T ss_pred             CCCceEEEEecCCCCCceEEEEEeCCeEEEE-EEECCCCCCCCCeEEEEEecCCCCCEEEeCCcceEEEeecCCCeEEEE
Confidence            567777889874    688999999997542 3332          2345665  6799999999999999986 45544


Q ss_pred             EEc
Q 021698          284 KWD  286 (309)
Q Consensus       284 ~~~  286 (309)
                      ..+
T Consensus       131 ~~t  133 (201)
T 4hn1_A          131 LCS  133 (201)
T ss_dssp             EES
T ss_pred             eCC
Confidence            443

>3d8c_A Hypoxia-inducible factor 1 alpha inhibitor; FIH, HIF, DSBH, oxygenase, transcription, inhibitor oxoglutarate, asparaginyl hydroxylase; HET: AKG; 2.10A {Homo sapiens} PDB: 2ilm_A* 2w0x_A* 1h2l_A* 1h2m_A* 1h2n_A* 1yci_A* 2cgn_A 2cgo_A* 1h2k_A* 2wa3_A* 2wa4_A* 3od4_A* 3p3n_A* 3p3p_A* 2yc0_A* 2y0i_A* 2yde_A* 1mze_A* 1mzf_A* 2xum_A* ...

Probab=93.72  E-value=0.28  Score=46.14  Aligned_cols=57  Identities=23%  Similarity=0.239  Sum_probs=45.7

Q ss_pred             cCCCcCCccccCccEEEEEEeCEEEEEEEe--------------------------------------CCeEEEecCCcE
Q 021698          221 KAGSVEPAHHHTFGHDLVVLEGKKSVWNLT--------------------------------------KGERFDLTVGDY  262 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~--------------------------------------~~~~~~L~pGd~  262 (309)
                      ++|+..+.|..+..-+..++.|+-++++.-                                      .....+|.|||.
T Consensus       191 ~~gs~t~~H~D~~~n~~~qv~G~K~~~L~pP~~~~~ly~~~~~~~~~~~s~vd~~~~d~~~~p~~~~~~~~~~~l~pGD~  270 (349)
T 3d8c_A          191 MEGNVTPAHYGEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDV  270 (349)
T ss_dssp             CTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBBCTTSTTBTBBCSCTTSCCTTTCGGGGGCCEEEEEECTTCE
T ss_pred             CCCCCccceECChhcEEEEEeceEEEEEeCcchhhhhccccccCCCCCcccccCCCcchhhCcccccCCcEEEEECCCCE
Confidence            566777889888877788899988875310                                      114589999999


Q ss_pred             EEECCCCcEEEEEcC
Q 021698          263 LFTPAGDVHRVKYYE  277 (309)
Q Consensus       263 i~iP~g~~H~~~n~~  277 (309)
                      +|||+|-.|.+.+.+
T Consensus       271 LyiP~gWwH~V~~l~  285 (349)
T 3d8c_A          271 LYIPMYWWHHIESLL  285 (349)
T ss_dssp             EEECTTCEEEEEECT
T ss_pred             EEECCCCcEEEEEcC
Confidence            999999999999997

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=93.70  E-value=0.39  Score=43.81  Aligned_cols=70  Identities=16%  Similarity=0.092  Sum_probs=54.7

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEe-cC---------CcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDL-TV---------GDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L-~p---------Gd~i~iP~g~~H~~~n~~d~~~~i~~  285 (309)
                      .++++++|.......-..+-.++.|.|++++  .++++++.+ ..         .+++|+|.|..=.+.+.++.++.+..
T Consensus        32 ~~~~L~~Ge~~~~~~~~~E~~iv~l~G~~~V--~~~g~~~~~~g~R~svF~~~~p~~lYvp~g~~v~i~a~~~~~~~v~s  109 (270)
T 2qjv_A           32 DVWQLXAGESITLPSDERERCLVLVAGLASV--XAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAXVTAETDLELAVCS  109 (270)
T ss_dssp             EEEEECTTCEEEECCSSEEEEEEEEESCEEE--EETTEEEEEECCCSSGGGCSCCCEEEECSSCCEEEEESSSEEEEEEE
T ss_pred             EEEEecCCCEEEecCCCcEEEEEEecceEEE--EECCEEEeccccccccccCCCCcEEEECCCCEEEEEecCCceEEEEe
Confidence            4688999988766655555556789999999  789998877 32         48999999998888888888887765


Q ss_pred             cC
Q 021698          286 DG  287 (309)
Q Consensus       286 ~g  287 (309)
                      ..
T Consensus       110 Ap  111 (270)
T 2qjv_A          110 AP  111 (270)
T ss_dssp             EE
T ss_pred             ee
Confidence            53

>3rcq_A Aspartyl/asparaginyl beta-hydroxylase; structural genomics, structural genomics consortium, SGC, oxidoreductase, human; HET: OGA; 2.05A {Homo sapiens}

Probab=93.67  E-value=0.16  Score=44.32  Aligned_cols=82  Identities=15%  Similarity=0.054  Sum_probs=58.1

Q ss_pred             EEEEEcCCCcCCccccCcc-----EEEEEEeC-EEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEcCCc
Q 021698          216 AIVRFKAGSVEPAHHHTFG-----HDLVVLEG-KKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDGRW  289 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~-----e~vyVl~G-~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~g~~  289 (309)
                      .+.++.||+.+++|..+..     ++..+.-. ...+  .++++++..++|.++++.-..+|.+.|.++..-++...   
T Consensus       105 ~fs~L~pG~~I~pH~g~~n~~lR~HL~L~~p~~~~~i--~V~~~~~~w~eGe~~~fDds~~Hev~N~~d~~RvvL~~---  179 (197)
T 3rcq_A          105 KYSIMHPGTHVWPHTGPTNCRLRMHLGLVIPKEGCKI--RCANETKTWEEGKVLIFDDSFEHEVWQDASSFRLIFIV---  179 (197)
T ss_dssp             EEEEECTTEEEEEECCSCTTEEEEEEEEECCSSSEEE--EETTEEECCCBTCEEEECTTSCEEEEECSSSCEEEEEE---
T ss_pred             EEEEeCCCCCcCCeeCCCCCeEEEEEEEEeCCCCcEE--EECCEEEEeeCCcEEEEcCCeEEEEEECCCCCEEEEEE---
Confidence            5678999999999988753     33333322 4556  67999999999999999999999999998654332221   


Q ss_pred             ccccchhHHHHHHH
Q 021698          290 DMFFDEDLETAKKA  303 (309)
Q Consensus       290 ~i~~~~~~~~a~~~  303 (309)
                      | +..|++..++++
T Consensus       180 D-~~rPdl~~~er~  192 (197)
T 3rcq_A          180 D-VWHPELTPQQRR  192 (197)
T ss_dssp             E-EECTTSCHHHHH
T ss_pred             e-eeCCCCCHHHHh
Confidence            2 344666555543

>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}

Probab=93.31  E-value=0.29  Score=48.29  Aligned_cols=58  Identities=22%  Similarity=0.249  Sum_probs=44.4

Q ss_pred             cCCCc-CCccccCccEEEEEEeCEEEEEEEeCC-----------------------eEEEecCCcEEEECCCCcEEEEEc
Q 021698          221 KAGSV-EPAHHHTFGHDLVVLEGKKSVWNLTKG-----------------------ERFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       221 ~pG~~-~p~H~H~~~e~vyVl~G~l~v~~~~~~-----------------------~~~~L~pGd~i~iP~g~~H~~~n~  276 (309)
                      ++|+. .++|+-+..-+++-+.|+-++++.-..                       ..++|+|||.+|||+|.+|...+.
T Consensus       172 p~Gs~g~~pH~D~~DvFllQv~G~KrWrL~~P~~~~~~lp~~~~~~~~~~~~~~p~~e~~L~pGDvLYiP~g~~H~~~s~  251 (489)
T 4diq_A          172 PPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQ  251 (489)
T ss_dssp             CSSBCCSCCBCCSSEEEEEEEEECEEEEEECCSSGGGTTCSSCCCCCCGGGCCCCSEEEEECTTCEEEECTTCEEEEEBC
T ss_pred             CCCcccccCccCCcceEEEEEeeEEEEEEeCCCCccccCCCcccccCCcccccCcceEEEECCCCEEEECCCCceEEEec
Confidence            44443 478888888888889998777532211                       258999999999999999999998


Q ss_pred             CC
Q 021698          277 EE  278 (309)
Q Consensus       277 ~d  278 (309)
                      ++
T Consensus       252 ~~  253 (489)
T 4diq_A          252 DG  253 (489)
T ss_dssp             SS
T ss_pred             CC
Confidence            64

>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}

Probab=92.69  E-value=0.21  Score=42.17  Aligned_cols=50  Identities=16%  Similarity=0.095  Sum_probs=35.7

Q ss_pred             HHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698           28 DALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG   81 (309)
Q Consensus        28 ~~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G   81 (309)
                      ..|.+.|++.|++|.+.+.  ++...+..++.+..+.    ..+|.-|.--|+|.|
T Consensus        43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~----~~~DlVittGG~g~~   94 (178)
T 3iwt_A           43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSI----DEVDVIISTGGTGYS   94 (178)
T ss_dssp             HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTC----TTCCEEEEESCCSSS
T ss_pred             HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhc----CCCCEEEecCCcccC
Confidence            4578889999999999986  4455565566665555    567776666666665

>3k2o_A Bifunctional arginine demethylase and lysyl-hydro JMJD6; structural genomics consortium, SGC, chromatin regulator, developmental protein; 1.75A {Homo sapiens} PDB: 3ld8_A 3ldb_A*

Probab=91.28  E-value=1.1  Score=41.89  Aligned_cols=29  Identities=24%  Similarity=0.257  Sum_probs=25.7

Q ss_pred             EEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          254 RFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       254 ~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ...+.|||.+|||+|-.|.+.|.+++..+
T Consensus       257 ~~~l~pGd~l~iP~gw~H~v~~~~~sisv  285 (336)
T 3k2o_A          257 EILQKPGETVFVPGGWWHVVLNLDTTIAI  285 (336)
T ss_dssp             EEEECTTCEEEECTTCEEEEEESSCEEEE
T ss_pred             EEEECCCCEEEeCCCCcEEEecCCCeEEE
Confidence            57899999999999999999999976544

>2yu1_A JMJC domain-containing histone demethylation PROT; JMJC-domain-containing histone demethylases, oxidoreductase; HET: AKG; 2.70A {Homo sapiens} PDB: 2yu2_A

Probab=90.77  E-value=0.85  Score=44.53  Aligned_cols=65  Identities=23%  Similarity=0.294  Sum_probs=47.8

Q ss_pred             EEEcCCCcCCccccCcc--EEEEEEeCEEEEEEE----------------------------eCCeEEEecCCcEEEECC
Q 021698          218 VRFKAGSVEPAHHHTFG--HDLVVLEGKKSVWNL----------------------------TKGERFDLTVGDYLFTPA  267 (309)
Q Consensus       218 v~l~pG~~~p~H~H~~~--e~vyVl~G~l~v~~~----------------------------~~~~~~~L~pGd~i~iP~  267 (309)
                      +--++|+..++|..+..  -+..++.|+-++.+.                            ......++.|||.+|||+
T Consensus       201 ~mGp~gS~T~~H~D~~~ts~w~avi~GrK~w~L~PP~~~~~~~y~~~~~s~~q~~~~~p~~~~~~~~v~l~pGE~LfIPs  280 (451)
T 2yu1_A          201 LMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGSQGDIFLGDRVSDCQRIELKQGYTFVIPS  280 (451)
T ss_dssp             EEECTTCEEEEECCGGGCEEEEEEEESCEEEEEECCCHHHHHHHHHHHHTTCCSSSCHHHHSSCCEEEEECTTCEEEECT
T ss_pred             EEccCCCCCCeEECCCCcchhhheecceEEEEEeCCCcccccccccccccccchhhhhccccccceEEEECCCcEEEeCC
Confidence            33456777788888754  455688888776421                            013457899999999999


Q ss_pred             CCcEEEEEcCCeEEE
Q 021698          268 GDVHRVKYYEETEFF  282 (309)
Q Consensus       268 g~~H~~~n~~d~~~~  282 (309)
                      |=.|.+.|..++..+
T Consensus       281 GWwH~V~nledsIai  295 (451)
T 2yu1_A          281 GWIHAVYTPTDTLVF  295 (451)
T ss_dssp             TCEEEEECSSCEEEE
T ss_pred             CceEEEecCCCeEEE
Confidence            999999999877543

>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}

Probab=90.72  E-value=0.81  Score=44.65  Aligned_cols=65  Identities=25%  Similarity=0.230  Sum_probs=48.6

Q ss_pred             EEEcCCCcCCccccCccE--EEEEEeCEEEEEEEe----------------------------CCeEEEecCCcEEEECC
Q 021698          218 VRFKAGSVEPAHHHTFGH--DLVVLEGKKSVWNLT----------------------------KGERFDLTVGDYLFTPA  267 (309)
Q Consensus       218 v~l~pG~~~p~H~H~~~e--~vyVl~G~l~v~~~~----------------------------~~~~~~L~pGd~i~iP~  267 (309)
                      +--++|+..++|.....-  +..+++|+-++.+.-                            ..-..++.|||.+|||+
T Consensus       236 ~mG~~gS~T~~HiD~~~ts~w~~vi~GrK~w~L~PPt~~nl~~~~~~~~s~~~~~~~~~~~~~~~~~v~l~pGetlfIPs  315 (447)
T 3kv4_A          236 LMSVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPT  315 (447)
T ss_dssp             EEECTTEEEEEECCGGGCEEEEEEEESEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGGSSCCEEEEEETTCEEEECT
T ss_pred             EEeCCCCCCCeeECCCCCceeEEEeeeEEEEEEeCCCcccccchhhcccCcchhhhhccccccceEEEEECCCcEEecCC
Confidence            344567777888877654  557899988875310                            11367899999999999


Q ss_pred             CCcEEEEEcCCeEEE
Q 021698          268 GDVHRVKYYEETEFF  282 (309)
Q Consensus       268 g~~H~~~n~~d~~~~  282 (309)
                      |-.|.+.|..++..+
T Consensus       316 GWwH~V~nledsIai  330 (447)
T 3kv4_A          316 GWIHAVLTPVDCLAF  330 (447)
T ss_dssp             TCEEEEEESSCEEEE
T ss_pred             CCeEEEecCCCEEEE
Confidence            999999999887554

>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*

Probab=90.67  E-value=0.67  Score=45.73  Aligned_cols=65  Identities=23%  Similarity=0.186  Sum_probs=49.1

Q ss_pred             EEEcCCCcCCccccCccE--EEEEEeCEEEEEEEeC----------------------------CeEEEecCCcEEEECC
Q 021698          218 VRFKAGSVEPAHHHTFGH--DLVVLEGKKSVWNLTK----------------------------GERFDLTVGDYLFTPA  267 (309)
Q Consensus       218 v~l~pG~~~p~H~H~~~e--~vyVl~G~l~v~~~~~----------------------------~~~~~L~pGd~i~iP~  267 (309)
                      +--++|+..++|.+...-  +..++.|+-++.+.-.                            .-..++.|||.+|||+
T Consensus       271 ~mG~~gS~T~~H~D~~~t~~w~~vv~G~K~w~L~PPt~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~pGe~lfIPs  350 (488)
T 3kv5_D          271 LMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPT  350 (488)
T ss_dssp             EEECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTCSSGGGSCGGGSSSCCEEEEEETTCEEEECT
T ss_pred             EEcCCCCCCCeEECCCCCceeeeccCeeEEEEEeCCcccccccccccccCCccchhhhcccccceEEEeeCCCCEEEeCC
Confidence            344667888899887765  5578999888753211                            1257899999999999


Q ss_pred             CCcEEEEEcCCeEEE
Q 021698          268 GDVHRVKYYEETEFF  282 (309)
Q Consensus       268 g~~H~~~n~~d~~~~  282 (309)
                      |=.|.+.|..++..+
T Consensus       351 GWwH~V~nledsIai  365 (488)
T 3kv5_D          351 GWIHAVLTSQDCMAF  365 (488)
T ss_dssp             TCEEEEEEEEEEEEE
T ss_pred             CceEEeeCCCCeEEE
Confidence            999999999876544

>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*

Probab=90.62  E-value=0.67  Score=44.17  Aligned_cols=63  Identities=25%  Similarity=0.238  Sum_probs=43.8

Q ss_pred             EcCCCcCCccccCccE--EEEEEeCEEEEEEE----------------------------eCCeEEEecCCcEEEECCCC
Q 021698          220 FKAGSVEPAHHHTFGH--DLVVLEGKKSVWNL----------------------------TKGERFDLTVGDYLFTPAGD  269 (309)
Q Consensus       220 l~pG~~~p~H~H~~~e--~vyVl~G~l~v~~~----------------------------~~~~~~~L~pGd~i~iP~g~  269 (309)
                      -++|+..+.|.....-  +..+++|+-++.+.                            ...-..++.|||.+|||+|-
T Consensus       154 Gp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtLfIPsGW  233 (371)
T 3k3o_A          154 SVRDSYTDFHIDFGGTSVWYHVLKGEKIFYLIRPTNANLTLFECWSSSSNQNEMFFGDQVDKCYKCSVKQGQTLFIPTGW  233 (371)
T ss_dssp             ECTTEEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSTTGGGSCGGGTSSCCEEEEEETTCEEEECTTC
T ss_pred             cCCCCCCCeEECCCCCceeEEEeeeEEEEEEECCCccccccccccccCCccchhhcccccCceEEEEECCCcEEEeCCCC
Confidence            3456666777666554  34577777666421                            01245789999999999999


Q ss_pred             cEEEEEcCCeEEE
Q 021698          270 VHRVKYYEETEFF  282 (309)
Q Consensus       270 ~H~~~n~~d~~~~  282 (309)
                      .|.+.|..++..+
T Consensus       234 wH~V~nledSIai  246 (371)
T 3k3o_A          234 IHAVLTPVDCLAF  246 (371)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             eEEEecCCCeEEE
Confidence            9999998876543

>2p17_A Pirin-like protein; GK1651, structural genomics, south collaboratory for structural genomics, protein structure in secsg; 1.52A {Geobacillus kaustophilus}

Probab=90.41  E-value=0.71  Score=42.12  Aligned_cols=85  Identities=16%  Similarity=0.181  Sum_probs=44.4

Q ss_pred             EEEEEcCCCcCCcccc-CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECC-C----CcEEEEEcCCeEEEEE-----
Q 021698          216 AIVRFKAGSVEPAHHH-TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPA-G----DVHRVKYYEETEFFIK-----  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H-~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~-g----~~H~~~n~~d~~~~i~-----  284 (309)
                      ..+++++|........ ...-++||++|++++    ++....|.+||.+++.. +    ..-.+.+.++..++++     
T Consensus       170 ~~~~L~~g~~~~~~~~~~~~~~lyv~~G~v~v----~g~~~~l~~~d~~~~~~~~~~~~~~l~l~a~~~a~~Ll~~G~Pl  245 (277)
T 2p17_A          170 VEMIVEPGTTVVQDLPGHYNGFLYILEGSGVF----GADNIEGKAGQALFFSRHNRGEETELNVTAREKLRLLLYAGEPV  245 (277)
T ss_dssp             EEEEECTTCEEEEEEETTCEEEEEEEESEEEE----TTTTEEEETTEEEEECCCCTTCEEEEEEEESSSEEEEEEEECCC
T ss_pred             EEEEECCCCEEEeccCCCCEEEEEEEeCeEEE----CCCceEeCCCcEEEEcCCCCCccceEEEEeCCCcEEEEEecccc
Confidence            3467888887654432 245688999999887    44234689999999986 6    4445666666665542     


Q ss_pred             -----EcCCcccccchhHHHHHHHH
Q 021698          285 -----WDGRWDMFFDEDLETAKKAV  304 (309)
Q Consensus       285 -----~~g~~~i~~~~~~~~a~~~~  304 (309)
                           +-|+|.+.=.+++.+|.+.-
T Consensus       246 ~epi~~~gpfVmnt~eei~qA~~d~  270 (277)
T 2p17_A          246 NEPVVAYGPFVMNTPEQIREAIRDY  270 (277)
T ss_dssp             CCCC---------------------
T ss_pred             CCCeEecCCeeeCCHHHHHHHHHHH
Confidence                 33444455556677776654

>3pua_A GRC5, PHD finger protein 2; alpha-ketoglutarate-Fe2+ dependent dioxygenases, histone TAI protein, protein binding; HET: OGA; 1.89A {Homo sapiens} PDB: 3pu3_A* 3ptr_B* 3pu8_B* 3pus_A*

Probab=90.03  E-value=0.8  Score=43.94  Aligned_cols=63  Identities=22%  Similarity=0.202  Sum_probs=44.6

Q ss_pred             EcCCCcCCccccCccE--EEEEEeCEEEEEEE----------------------------eCCeEEEecCCcEEEECCCC
Q 021698          220 FKAGSVEPAHHHTFGH--DLVVLEGKKSVWNL----------------------------TKGERFDLTVGDYLFTPAGD  269 (309)
Q Consensus       220 l~pG~~~p~H~H~~~e--~vyVl~G~l~v~~~----------------------------~~~~~~~L~pGd~i~iP~g~  269 (309)
                      -++|+..++|......  +..+++|+-.+.+.                            ...-...+.|||.+|||+|-
T Consensus       181 Gp~gS~T~fHiD~~gTs~w~~vi~GrK~w~L~PPt~~nl~~y~~~~~s~~~~e~~~~~~~~~~~ev~l~pGEtlfIPsGW  260 (392)
T 3pua_A          181 CVKDSYTDFHIDSGGASAWYHVLKGEKTFYLIRPASANISLYERWRSASNHSEMFFADQVDKCYKCIVKQGQTLFIPSGW  260 (392)
T ss_dssp             ECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHHSTTGGGSCGGGGSSCCEEEEEETTCEEEECTTC
T ss_pred             eCCCCCCCEeECCCCCceeeeeccceEEEEEECCCcccccchhhcccCcchhhhhhcccccceEEEEECCCcEEeeCCCc
Confidence            3556666777666543  45677887776421                            01246789999999999999


Q ss_pred             cEEEEEcCCeEEE
Q 021698          270 VHRVKYYEETEFF  282 (309)
Q Consensus       270 ~H~~~n~~d~~~~  282 (309)
                      .|.+.|..++..+
T Consensus       261 wH~V~nledSIai  273 (392)
T 3pua_A          261 IYATLTPVDCLAF  273 (392)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             eEEEecCCCEEEE
Confidence            9999999876553

>1eyb_A Homogentisate 1,2-dioxygenase; jelly roll, beta sandwich, oxidoreductase; 1.90A {Homo sapiens} SCOP: b.82.1.4 PDB: 1ey2_A

Probab=89.97  E-value=0.86  Score=44.53  Aligned_cols=51  Identities=16%  Similarity=0.129  Sum_probs=41.9

Q ss_pred             CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          232 TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       232 ~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ..++++|+-+|++.+  .++=....++|||+++||.|+.+++.-.+....+|+
T Consensus       177 DGD~Livpq~G~l~i--~TEfG~L~v~pgei~VIPRGi~frv~l~~p~Rgyi~  227 (471)
T 1eyb_A          177 DGDFLIVPQKGNLLI--YTEFGKMLVQPNEICVIQRGMRFSIDVFEETRGYIL  227 (471)
T ss_dssp             SEEEEEEEEESCEEE--EETTEEEEECTTEEEEECTTCCEEEECSSSEEEEEE
T ss_pred             CCCEEEEEEeCCEEE--EEecccEEeccCCEEEECCccEEEEeeCCCceEEEE
Confidence            455667899999999  678888999999999999999999977665544443

>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A

Probab=88.96  E-value=0.33  Score=44.78  Aligned_cols=68  Identities=13%  Similarity=0.054  Sum_probs=47.5

Q ss_pred             EEEcCCCcCCccccCcc-----------EEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCe-EEEEEE
Q 021698          218 VRFKAGSVEPAHHHTFG-----------HDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET-EFFIKW  285 (309)
Q Consensus       218 v~l~pG~~~p~H~H~~~-----------e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~-~~~i~~  285 (309)
                      +++.||+.+.+|.-+.+           ++-++..-.+.+  .++++.+.+++|+++|+....+|++.|.++. .+.++.
T Consensus        96 lrL~PG~~I~~HrD~~~l~~~~~~~~RlHIPL~Tnp~~~f--~vdg~~~~m~~GE~w~~d~~~~H~v~N~g~~~RIhLv~  173 (290)
T 1e5r_A           96 SRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFH--SNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQSLCV  173 (290)
T ss_dssp             EEEEESEEEEEECCC--------CBCCEEEECSCCTTEEE--EETTEEECCCTTEEEECCTTSCEEEEESSSSCCCEEEE
T ss_pred             EEeCCCCEeeCccCccccccccCCceEEEeeEecCCCcEE--EECCEEEecCCCCEEEEcCCCeeEEEcCCCCCeEEEEE
Confidence            47888888887755511           111222333444  6799999999999999999999999999863 444444


Q ss_pred             cC
Q 021698          286 DG  287 (309)
Q Consensus       286 ~g  287 (309)
                      |.
T Consensus       174 D~  175 (290)
T 1e5r_A          174 DF  175 (290)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*

Probab=88.70  E-value=1.2  Score=42.68  Aligned_cols=63  Identities=25%  Similarity=0.211  Sum_probs=44.5

Q ss_pred             EcCCCcCCccccCccE--EEEEEeCEEEEEEEe----------------------------CCeEEEecCCcEEEECCCC
Q 021698          220 FKAGSVEPAHHHTFGH--DLVVLEGKKSVWNLT----------------------------KGERFDLTVGDYLFTPAGD  269 (309)
Q Consensus       220 l~pG~~~p~H~H~~~e--~vyVl~G~l~v~~~~----------------------------~~~~~~L~pGd~i~iP~g~  269 (309)
                      -++|+..+.|.....-  +..++.|+-++.+.-                            ..-...+.|||.+|||+|-
T Consensus       182 Gp~gS~T~~HiD~~gts~w~~vv~GrK~w~L~PPt~~nl~ly~~~~~s~~~~e~~~~~~~~~~~~v~l~pGe~lfIPsGW  261 (397)
T 3kv9_A          182 GVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGW  261 (397)
T ss_dssp             ECTTCEEEEECCGGGCEEEEEEEEEEEEEEEECCCHHHHHHHHHHHTSGGGGGSCGGGGSSCCEEEEEETTCEEEECTTC
T ss_pred             cCCCCCCCEEECCCCCceeeeecCceEEEEEeCCcccccccccccccCCCcchhhhccccCceEEEEECCCCEEEeCCCC
Confidence            3456667777776554  446777777764211                            1234689999999999999


Q ss_pred             cEEEEEcCCeEEE
Q 021698          270 VHRVKYYEETEFF  282 (309)
Q Consensus       270 ~H~~~n~~d~~~~  282 (309)
                      .|.+.|..++..+
T Consensus       262 ~H~V~nledSIai  274 (397)
T 3kv9_A          262 IHAVLTSQDCMAF  274 (397)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             eEEccCCcCeEEE
Confidence            9999999776543

>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A

Probab=88.05  E-value=0.65  Score=38.84  Aligned_cols=66  Identities=15%  Similarity=0.069  Sum_probs=42.0

Q ss_pred             CCCcEEEEEeCcccHHHH---------HHHHHHHHhC-----CCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEE
Q 021698           10 PHPLKIIAGADSFGAELK---------DALVSHLRSL-----NIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGL   73 (309)
Q Consensus        10 ~~~mkI~ig~D~~g~~lk---------~~l~~~l~~~-----g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi   73 (309)
                      .+++||+|-+  .|-++-         ..|.+.|++.     |+++.+++.  ++...+..++.+.+..    ..+|.-|
T Consensus         3 ~~~~rv~Iis--tGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~----~~~DlVi   76 (167)
T 1uuy_A            3 GPEYKVAILT--VSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDV----DEMDLIL   76 (167)
T ss_dssp             CCSEEEEEEE--ECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHT----SCCSEEE
T ss_pred             CCCcEEEEEE--ECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhc----CCCCEEE
Confidence            4567777665  222221         2344555555     999999885  4566677777776643    3578777


Q ss_pred             EEecCchh
Q 021698           74 VACGTGVG   81 (309)
Q Consensus        74 ~~cgtG~G   81 (309)
                      +--|+|.|
T Consensus        77 ttGG~g~g   84 (167)
T 1uuy_A           77 TLGGTGFT   84 (167)
T ss_dssp             EESCCSSS
T ss_pred             ECCCCCCC
Confidence            77788776

>1ywk_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase 1; structural genomics, nysgxrc target T1814, PSI, protein structure initiative; 2.95A {Enterococcus faecalis} SCOP: b.82.1.13

Probab=88.00  E-value=1.3  Score=40.74  Aligned_cols=69  Identities=9%  Similarity=0.024  Sum_probs=47.6

Q ss_pred             EEEEEcCCCcCCcc-ccCccEE-EEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc----CCeEEEEEEc
Q 021698          216 AIVRFKAGSVEPAH-HHTFGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY----EETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p~H-~H~~~e~-vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~----~d~~~~i~~~  286 (309)
                      ..+++++|...... .=...|+ ++.+.|..++  .++++++.|.+-|++|+|.|..-.....    ++.++.+...
T Consensus        60 ~~l~L~~~~~~~~~~fl~~rE~~iV~lgG~~~V--~vdg~~f~lg~~dalYVp~G~~~v~~as~d~~~~a~fav~sA  134 (289)
T 1ywk_A           60 EELEIILDKELGVDYFLERRELGVINIGGPGFI--EIDGAKETMKKQDGYYIGKETKHVRFSSENPDNPAKFYISCV  134 (289)
T ss_dssp             SCEECCCSGGGTSSSTTTTEEEEEEECSSCEEE--EETTEEEEECTTCEEEECTTCCCEEEEESCTTSCCCEEEEEE
T ss_pred             ceEEcCCCceecccccCCCcEEEEEEccCeEEE--EECCEEEecCCCCEEEeCCCCeEEEEEecCCCCCeEEEEEcc
Confidence            34667777554433 1234455 4679999999  7899999999999999999987444442    3456665544

>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid, reactive cysteine, cytosolic protein; 1.85A {Escherichia coli}

Probab=86.77  E-value=3.1  Score=37.47  Aligned_cols=66  Identities=20%  Similarity=0.144  Sum_probs=45.4

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CCeEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      ..+++++|...........-++||++|++++  .- +++...|.+||.+++..+..=.+.+.++.++++
T Consensus       185 ~~~~L~~g~~~~~~~~~~~~~l~v~~G~v~v--~g~~~~~~~l~~gd~~~l~~~~~l~l~a~~~a~~LL  251 (256)
T 2vec_A          185 HHIVLDKGESANFQLHGPRAYLQSIHGKFHA--LTHHEEKAALTCGDGAFIRDEANITLVADSPLRALL  251 (256)
T ss_dssp             EEEEECTTCEEEEECSSSEEEEEEEESCEEE--EETTEEEEEECTTCEEEEESCSEEEEEESSSEEEEE
T ss_pred             EEEEECCCCEEEEecCCCeEEEEEEECEEEE--CCccccceEECCCCEEEECCCCeEEEEeCCCCEEEE
Confidence            3467888887644333322778999999998  31 123467999999999877666677766666543

>2ypd_A Probable JMJC domain-containing histone demethyla PROT EIN 2C; oxidoreductase; 2.10A {Homo sapiens}

Probab=86.67  E-value=1  Score=42.96  Aligned_cols=29  Identities=24%  Similarity=0.394  Sum_probs=24.6

Q ss_pred             CeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          252 GERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       252 ~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      .=++.-.+||.||||+|.+|+++|..++.
T Consensus       292 ~~~~~Q~~GeavfiPaG~~HQV~Nl~~~i  320 (392)
T 2ypd_A          292 TCTLIQFLGDAIVLPAGALHQVQNFHSCI  320 (392)
T ss_dssp             CEEEEEETTCEEEECTTCEEEEEESSEEE
T ss_pred             eEEEEEcCCCEEEecCCCHHHHhcccchh
Confidence            34466789999999999999999999654

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=86.33  E-value=3  Score=38.59  Aligned_cols=36  Identities=22%  Similarity=0.139  Sum_probs=31.4

Q ss_pred             CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCC
Q 021698          232 TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGD  269 (309)
Q Consensus       232 ~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~  269 (309)
                      ..-.+++|++|+.++  ..+++.+.|++|++++||++.
T Consensus       268 ~~~~il~v~~G~~~l--~~~~~~~~l~~G~~~~vpa~~  303 (319)
T 1qwr_A          268 ESFLICSVIEGSGLL--KYEDKTCPLKKGDHFILPAQM  303 (319)
T ss_dssp             SSCEEEEEEEEEEEE--EETTEEEEEETTCEEEECTTC
T ss_pred             CccEEEEEEcCeEEE--EECCEEEEEcCCcEEEEeCCC
Confidence            456788899999999  557788999999999999987

>2oyz_A UPF0345 protein VPA0057; unknown function, structural genomi 2, protein structure initiative, midwest center for structu genomics, MCSG; 1.71A {Vibrio parahaemolyticus} SCOP: b.82.1.22

Probab=85.76  E-value=2.1  Score=32.79  Aligned_cols=48  Identities=13%  Similarity=0.210  Sum_probs=38.5

Q ss_pred             ccEEEEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          233 FGHDLVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       233 ~~e~vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..|..-|++|++++.  ..+  ++....+|+.+.+|++..-.++....+..+
T Consensus        41 ~~E~M~vvsG~~~V~--lpg~~ew~~~~aGesF~Vpans~F~l~v~~~~~Yl   90 (94)
T 2oyz_A           41 APERMTVVKGALVVK--RVGEADWTTYSSGESFDVEGNSSFELQVKDATAYL   90 (94)
T ss_dssp             SCEEEEEEESEEEEE--ETTCSSCEEEETTCEEEECSSEEEEEEESSCEEEE
T ss_pred             CeEEEEEEEeEEEEE--cCCCCcCEEECCCCEEEECCCCEEEEEEcccEeEE
Confidence            457788999999995  443  578899999999999998888877665543

>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B

Probab=84.65  E-value=3.2  Score=34.73  Aligned_cols=127  Identities=21%  Similarity=0.245  Sum_probs=72.3

Q ss_pred             CCCCCcEEEEE--eCcccHH---HHHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCch
Q 021698            8 AAPHPLKIIAG--ADSFGAE---LKDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGV   80 (309)
Q Consensus         8 ~~~~~mkI~ig--~D~~g~~---lk~~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~   80 (309)
                      .+.++|||.|-  +|..|.-   =-..|.+.|++.|++|.+.+.  ++...+...+.+.+.+    +.+|.-|+--|+|.
T Consensus         6 ~~~~~~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~----~~~DlVittGG~g~   81 (172)
T 1mkz_A            6 TEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIAS----DDVQVVLITGGTGL   81 (172)
T ss_dssp             SSCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHS----SSCCEEEEESCCSS
T ss_pred             CCCCCCEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhc----CCCCEEEeCCCCCC
Confidence            33566776554  4655531   124577888899999999875  4566677777777654    45787777778877


Q ss_pred             hh-----hhhhcC----CCceEE---EEeCCH--HHHHHHHh----hcCcceeeecccccCHHHHHH-HHHHHhcCC
Q 021698           81 GV-----AIFANK----NPGVFA---TTCLTP--ADALNTRS----INNCNVLAVSGMSTSKESAVE-ILDTWLKTP  138 (309)
Q Consensus        81 G~-----~i~aNK----~~gira---a~~~~~--~~A~~~r~----hNnaNvl~~g~~~~~~~~a~~-i~~~~l~~~  138 (309)
                      |-     ...+.-    .+|..-   .+...+  ..+.++|.    .++..|++|++--.+.....+ ++.-+|..-
T Consensus        82 ~~~D~t~ea~~~~~~~~l~g~~~~~~~i~~~p~G~~~~~a~~~~G~~~~~~v~~LPG~P~~~~~~~~~~v~p~L~~~  158 (172)
T 1mkz_A           82 TEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQLDAR  158 (172)
T ss_dssp             STTCCHHHHHGGGCSEECHHHHHHHHHHHHHHHGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHHCTT
T ss_pred             CCCCCHHHHHHHHhcccCCccHHHHHHHhhcccCcceecccccceeECCEEEEECCCCHHHHHHHHHHHHHHHHhhh
Confidence            52     111111    111100   000000  11233331    477889999998766666544 456666553

>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} SCOP: b.82.1.12

Probab=84.09  E-value=4.9  Score=35.73  Aligned_cols=63  Identities=10%  Similarity=0.028  Sum_probs=45.2

Q ss_pred             EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ..+++++|........+ ..-++||++|++++    ++  ..|.+||.+.+..+..=.+.+.++..++++
T Consensus       163 ~~~~l~~g~~~~~~~~~~~~~~~~v~~G~v~v----~g--~~l~~gd~~~~~~~~~l~l~a~~~a~~Ll~  226 (242)
T 1tq5_A          163 YRWALLKDEQSVHQIAAERRVWIQVVKGNVTI----NG--VKASTSDGLAIWDEQAISIHADSDSEVLLF  226 (242)
T ss_dssp             EEEEECTTCEEEECCCTTCEEEEEEEESEEEE----TT--EEEETTCEEEEESCSCEEEEESSSEEEEEE
T ss_pred             EEEEECCCCEEEeecCCCcEEEEEEccCcEEE----CC--EEeCCCCEEEECCCCeEEEEeCCCCEEEEE
Confidence            45678888876433322 45678999999988    44  369999999998877667777666666544

>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}

Probab=83.83  E-value=0.24  Score=38.66  Aligned_cols=48  Identities=15%  Similarity=0.292  Sum_probs=31.7

Q ss_pred             eEEEEecCchhhhhhhcCCCc----------eEEEEeCCHHHHHHHHhhcCcceeeecccccC
Q 021698           71 RGLVACGTGVGVAIFANKNPG----------VFATTCLTPADALNTRSINNCNVLAVSGMSTS  123 (309)
Q Consensus        71 ~gi~~cgtG~G~~i~aNK~~g----------iraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~  123 (309)
                      +-+++||+|+|.||.++|++-          |.+.-..+...     ...++.++..+-.+-.
T Consensus         6 kIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~-----~~~~~D~Ii~t~~l~~   63 (109)
T 2l2q_A            6 NILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSE-----VVDRFDVVLLAPQSRF   63 (109)
T ss_dssp             EEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHH-----HTTTCSEEEECSCCSS
T ss_pred             EEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHh-----hcCCCCEEEECCccHH
Confidence            579999999999999998864          22222222221     2467788877776543

>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A 3rzz_A

Probab=83.76  E-value=4.6  Score=37.93  Aligned_cols=72  Identities=15%  Similarity=0.058  Sum_probs=44.2

Q ss_pred             EEEEEcCCCcC-CccccCccEEEEEEeCEEEEEEEeCCeE--EEecCCcEEEECCCCcEEEEEcCCeEE-EEEEcCCcc
Q 021698          216 AIVRFKAGSVE-PAHHHTFGHDLVVLEGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHRVKYYEETEF-FIKWDGRWD  290 (309)
Q Consensus       216 ~~v~l~pG~~~-p~H~H~~~e~vyVl~G~l~v~~~~~~~~--~~L~pGd~i~iP~g~~H~~~n~~d~~~-~i~~~g~~~  290 (309)
                      ..+++..+..- ..-.|-..|.+ |.+|.+++++.-.+++  ..|.|+|+.|+.|-++|.|.  |...+ .+-..+++.
T Consensus       337 ~~l~Vd~~d~~~DL~d~ge~hY~-v~~G~lTL~W~~~dGt~~a~L~PDgSAwv~PFV~H~w~--G~GtVlkLgsG~hl~  412 (443)
T 3g7d_A          337 SFLRVDADGRGADLIDHAENHYV-VTEGRLTLEWDGPDGPASVELEPDGSAWTGPFVRHRWH--GTGTVLKFGSGAHLG  412 (443)
T ss_dssp             EEEEEC------CBCCSSEEEEE-EEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEE--SSEEEEEEEECSTTC
T ss_pred             EEEEecCCCcchhhhhcccceEE-EecCceEEEecCCCCccceEECCCCceeeccccccccc--CCceEEEeccCCccc
Confidence            45566543222 23334444554 7999999964434444  68999999999999999997  44444 444444443

>1zx5_A Mannosephosphate isomerase, putative; STRU genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: LFR; 2.30A {Archaeoglobus fulgidus} SCOP: b.82.1.3

Probab=83.38  E-value=0.72  Score=42.52  Aligned_cols=21  Identities=24%  Similarity=0.202  Sum_probs=19.1

Q ss_pred             eEEEecCCcEEEECCCCcEEE
Q 021698          253 ERFDLTVGDYLFTPAGDVHRV  273 (309)
Q Consensus       253 ~~~~L~pGd~i~iP~g~~H~~  273 (309)
                      ..+.|+|||++|+|+|++|..
T Consensus       158 n~v~l~pGd~~~ipaGt~HA~  178 (300)
T 1zx5_A          158 NTFETTPYDTFVIRPGIPHAG  178 (300)
T ss_dssp             EEEECCTTCEEEECTTCCEEE
T ss_pred             ceeECCCCCEEEcCCCCceEc
Confidence            457899999999999999986

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0

Probab=83.24  E-value=4.4  Score=31.94  Aligned_cols=65  Identities=12%  Similarity=0.223  Sum_probs=45.3

Q ss_pred             EEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          217 IVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      +=.+.||. .|.+... ..|..-|++|++++.+--..++....+|+.+.+|++..-.++....+..+
T Consensus        41 lGVm~PGe-~~YtF~T~~~E~MevvsG~l~V~Lpg~~eW~~~~aGesF~VpanssF~lkv~~~~~Y~  106 (111)
T 3hqx_A           41 LGVILPTE-QPLTFETHVPERMEIISGECRVKIADSTESELFRAGQSFYVPGNSLFKIETDEVLDYV  106 (111)
T ss_dssp             EEEECCCS-SCEEEECSSCEEEEEEESEEEEEETTCSSCEEEETTCEEEECTTCEEEEECSSCEEEE
T ss_pred             EEEEeccc-cceEEcCCCcEEEEEEEeEEEEEcCCcccCEEeCCCCEEEECCCCcEEEEECcceeEE
Confidence            34556764 1223332 35778899999999522123678899999999999999888877666554

>2qjv_A Uncharacterized IOLB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.90A {Salmonella typhimurium LT2}

Probab=83.18  E-value=4.3  Score=36.87  Aligned_cols=76  Identities=18%  Similarity=0.228  Sum_probs=50.1

Q ss_pred             EEcCCCc---CCccccCcc---------EEEE--EEe--CEEEEEEEe------CCeEEEecCCcEEEECCCCcEEEEEc
Q 021698          219 RFKAGSV---EPAHHHTFG---------HDLV--VLE--GKKSVWNLT------KGERFDLTVGDYLFTPAGDVHRVKYY  276 (309)
Q Consensus       219 ~l~pG~~---~p~H~H~~~---------e~vy--Vl~--G~l~v~~~~------~~~~~~L~pGd~i~iP~g~~H~~~n~  276 (309)
                      ++.||+.   .|+|.|+..         |..|  +-.  |.+--  .+      .+++..++-||.+.+|+|- |.....
T Consensus       158 v~tpgG~WSSyPpHkHd~~~~~~e~~lEE~YYf~~~~~~gf~~q--~vyt~d~~~de~~~V~~~d~VlvP~Gy-Hp~~a~  234 (270)
T 2qjv_A          158 VYTNAGATSSWPAHXHDTAVEGQETYLEETYYHRFNPPQGFCLQ--RVYTDDRSLDECMAVYNRDVVXVPXGY-HPVATI  234 (270)
T ss_dssp             EEECTTCEESCSCEECEEEETTTEEECEEEEEEEEESTTCEEEE--EEECTTSSSEEEEEEETTCEEEESSSB-CCEEEC
T ss_pred             EEcCCCccccCCCcccccccCcccccceeEEEEECCCCCCEEEE--EEeCCCCCCceEEEEECCCEEecCCCc-CCCcCC
Confidence            4667653   499999863         4443  333  43332  23      4678999999999999999 997666


Q ss_pred             CCeEEEEEEc--C---CcccccchhH
Q 021698          277 EETEFFIKWD--G---RWDMFFDEDL  297 (309)
Q Consensus       277 ~d~~~~i~~~--g---~~~i~~~~~~  297 (309)
                      .....+.+|.  |   .|-+..+|+.
T Consensus       235 pGy~~YylwvMaG~~r~~~~~~dP~H  260 (270)
T 2qjv_A          235 AGYDNYYLNVMAGPLRXWRFTWEENH  260 (270)
T ss_dssp             TTCEEEEEEEEECSSCCCCCEECGGG
T ss_pred             CCcccEEEEEEECCCccccccCCCch
Confidence            5555555554  2   5666666653

>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*

Probab=82.32  E-value=3.5  Score=40.96  Aligned_cols=28  Identities=29%  Similarity=0.355  Sum_probs=25.0

Q ss_pred             EEEecCCcEEEECCCCcEEEEEcCCeEE
Q 021698          254 RFDLTVGDYLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       254 ~~~L~pGd~i~iP~g~~H~~~n~~d~~~  281 (309)
                      ...+.||+.+|||+|-.|.+.|..++.+
T Consensus       367 ~v~l~pGEtlfIPsGW~HaV~tleDSIa  394 (528)
T 3pur_A          367 RVVIKEGQTLLIPAGWIHAVLTPVDSLV  394 (528)
T ss_dssp             EEEEETTCEEEECTTCEEEEEEEEEEEE
T ss_pred             EEEECCCCEEEecCCceEEEecCCCeEE
Confidence            4789999999999999999999987654

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=82.10  E-value=0.86  Score=42.33  Aligned_cols=21  Identities=29%  Similarity=0.849  Sum_probs=19.6

Q ss_pred             eEEEecCCcEEEECCCCcEEE
Q 021698          253 ERFDLTVGDYLFTPAGDVHRV  273 (309)
Q Consensus       253 ~~~~L~pGd~i~iP~g~~H~~  273 (309)
                      ..+.|+|||++|+|+|++|..
T Consensus       158 n~v~l~pGd~~~ipaGt~HA~  178 (319)
T 1qwr_A          158 RRIKIKPGDFYYVPSGTLHAL  178 (319)
T ss_dssp             EEEECCTTCEEEECTTCCEEE
T ss_pred             eEEEcCCCCEEEcCCCCceEe
Confidence            678999999999999999985

>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A

Probab=81.88  E-value=2  Score=36.22  Aligned_cols=48  Identities=17%  Similarity=0.176  Sum_probs=33.7

Q ss_pred             HHHHHHH---hCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698           29 ALVSHLR---SLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG   81 (309)
Q Consensus        29 ~l~~~l~---~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G   81 (309)
                      .|.+.|+   +.|++| +++.  ++...+...+.+.+.+    ..+|.-|+--|+|.|
T Consensus        29 ~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~----~~~DlVittGG~g~g   81 (178)
T 2pbq_A           29 AIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELADE----KGCSLILTTGGTGPA   81 (178)
T ss_dssp             HHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHHT----SCCSEEEEESCCSSS
T ss_pred             HHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHhc----CCCCEEEECCCCCCC
Confidence            4555555   899999 8874  4566677777766653    357888888888876

>2wfp_A Mannose-6-phosphate isomerase; APO-structure, metal-binding; 1.67A {Salmonella typhimurium} PDB: 3h1w_A 3h1m_A 3h1y_A*

Probab=81.80  E-value=2.7  Score=40.14  Aligned_cols=38  Identities=21%  Similarity=0.281  Sum_probs=32.4

Q ss_pred             ccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCC
Q 021698          230 HHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGD  269 (309)
Q Consensus       230 ~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~  269 (309)
                      .+..-.+++|++|++++  ..+++...|++|+++|||++.
T Consensus       339 ~~~~~~il~v~~G~~~l--~~~~~~~~l~~G~~~fvpa~~  376 (394)
T 2wfp_A          339 GQHSAAILFCVEGEAVL--RKDEQRLVLKPGESAFIGADE  376 (394)
T ss_dssp             CCSSCEEEEEEEEEEEE--EETTEEEEECTTCEEEECGGG
T ss_pred             cCCCcEEEEEEeceEEE--EECCeEEEEccCcEEEEeCCC
Confidence            44556788999999999  567788999999999999985

>1j1l_A Pirin; beta sandwich, cupin, iron, metatl binding protein; 2.10A {Homo sapiens} SCOP: b.82.1.12 PDB: 3acl_A*

Probab=81.59  E-value=6.9  Score=35.77  Aligned_cols=88  Identities=11%  Similarity=0.149  Sum_probs=53.2

Q ss_pred             EEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEc--CCeEEEE----------
Q 021698          217 IVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYY--EETEFFI----------  283 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~--~d~~~~i----------  283 (309)
                      .+++++|........+ ..-++||++|++++  .-++....+.++..++..+|..=.+.+.  ++..+++          
T Consensus       173 ~~~l~~g~~~~~~l~~~~~~~lyv~~G~v~v--~g~~~~~~~~~~~~~~l~~gd~~~i~~~a~~~a~~LLl~G~Pl~epi  250 (290)
T 1j1l_A          173 DFKLDPGAKHSQPIPKGWTSFIYTISGDVYI--GPDDAQQKIEPHHTAVLGEGDSVQVENKDPKRSHFVLIAGEPLREPV  250 (290)
T ss_dssp             EEEECTTCEEEEECCTTCEEEEEEEESCEEE--SCTTSCEEECTTEEEEECSCSEEEEECCSSSCEEEEEEEECCCCSCC
T ss_pred             EEEECCCCEEEeecCCCCEEEEEEEeCeEEE--CCcccceeccCceEEEecCCCEEEEEEcCCCCcEEEEEEcccCCCCE
Confidence            4678888876433222 45778999999998  2111113455566666666655455532  3444433          


Q ss_pred             EEcCCcccccchhHHHHHHHHhh
Q 021698          284 KWDGRWDMFFDEDLETAKKAVEK  306 (309)
Q Consensus       284 ~~~g~~~i~~~~~~~~a~~~~~~  306 (309)
                      ++-|+|.+.=.+++.+|.+.-+.
T Consensus       251 ~~~gpFVmnt~eeI~qA~~d~~~  273 (290)
T 1j1l_A          251 IQHGPFVMNTNEEISQAILDFRN  273 (290)
T ss_dssp             EEETTEEESSHHHHHHHHHHHHT
T ss_pred             EecCCeeeCCHHHHHHHHHHHHh
Confidence            34456666667889999876553

>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1

Probab=80.59  E-value=3.3  Score=34.49  Aligned_cols=69  Identities=22%  Similarity=0.166  Sum_probs=43.7

Q ss_pred             CCCCcEEEEEe--CcccH---HHHHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchh
Q 021698            9 APHPLKIIAGA--DSFGA---ELKDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVG   81 (309)
Q Consensus         9 ~~~~mkI~ig~--D~~g~---~lk~~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G   81 (309)
                      ..++||++|-+  |..|-   .=-..|.+.|++.|++|.+.+.  ++...+...+.+.+.+    ..+|.-|+--|+|.|
T Consensus        10 v~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~----~~~DlVittGG~g~g   85 (169)
T 1y5e_A           10 APKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHK----EDVDVVLTNGGTGIT   85 (169)
T ss_dssp             --CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTC----TTCSEEEEECCCSSS
T ss_pred             cccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhc----CCCCEEEEcCCCCCC
Confidence            34667766553  44331   1123466677888999999885  4566677777776653    357877777777776

>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D

Probab=80.57  E-value=0.48  Score=36.87  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=18.1

Q ss_pred             eEEEEecCchhhhhhhcCCC
Q 021698           71 RGLVACGTGVGVAIFANKNP   90 (309)
Q Consensus        71 ~gi~~cgtG~G~~i~aNK~~   90 (309)
                      +-+++||+|++.|+.++|++
T Consensus         5 kIll~Cg~G~sTS~l~~k~~   24 (106)
T 1e2b_A            5 HIYLFSSAGMSTSLLVSKMR   24 (106)
T ss_dssp             EEEEECSSSTTTHHHHHHHH
T ss_pred             EEEEECCCchhHHHHHHHHH
Confidence            57899999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d1o1xa_	145	c.121.1.1 (A:) Putative sugar-phosphate isomerase	3e-27
d2vvpa1	156	c.121.1.1 (A:3-158) Alternate ribose 5-phosphate i	5e-27
d1nn4a_	159	c.121.1.1 (A:) Alternate ribose 5-phosphate isomer	6e-27
d2o1qa1	144	b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA	2e-15
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	6e-08
d2d40a1	308	b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Es	6e-06
d3bu7a1	355	b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Si	6e-07
d3bu7a1	355	b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Si	2e-05
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	1e-06
d2phda1	351	b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Ps	2e-05
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	1e-06
d1y3ta1	330	b.82.1.5 (A:5-334) Hypothetical protein YxaG {Baci	1e-05
d1yhfa1	112	b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {S	4e-06
d1sefa_	250	b.82.1.11 (A:) Hypothetical protein EF2996 {Entero	3e-05
d1sefa_	250	b.82.1.11 (A:) Hypothetical protein EF2996 {Entero	0.001
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	3e-05
d1juha_	348	b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergill	2e-04
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	8e-05
d1sq4a_	273	b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {	2e-04
d1j58a_	372	b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {B	2e-04
d1sfna_	245	b.82.1.11 (A:) Hypothetical protein DR1152 {Deinoc	3e-04
d1sfna_	245	b.82.1.11 (A:) Hypothetical protein DR1152 {Deinoc	3e-04
d1rc6a_	253	b.82.1.11 (A:) Hypothetical protein YlbA {Escheric	3e-04
d1rc6a_	253	b.82.1.11 (A:) Hypothetical protein YlbA {Escheric	6e-04
d1uija1	170	b.82.1.2 (A:6-175) Seed storage 7S protein {Soybea	5e-04
d2f4pa1	134	b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Th	0.001
d1uika1	203	b.82.1.2 (A:148-350) Seed storage 7S protein {Soyb	0.002
d1vj2a_	114	b.82.1.10 (A:) Hypothetical protein TM1459 {Thermo	0.002
d2bnma2	122	b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid	0.004

>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Putative sugar-phosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

 Score =  101 bits (254), Expect = 3e-27
 Identities = 49/134 (36%), Positives = 73/134 (54%), Gaps = 9/134 (6%)

Query: 11  HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDS 65
           H +KI   +D    ELK+ + ++L    I+VED GT      DY     +V + + S+++
Sbjct: 1   HHVKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSNEA 60

Query: 66  SETTTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKE 125
                 G++ CGTG+G++I AN+  G+ A  CL P  A   RS NN N+L + G     E
Sbjct: 61  D----FGILLCGTGLGMSIAANRYRGIRAALCLFPDMARLARSHNNANILVLPGRLIGAE 116

Query: 126 SAVEILDTWLKTPF 139
            A  I+DT+L TPF
Sbjct: 117 LAFWIVDTFLSTPF 130

>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Alternate ribose 5-phosphate isomerase B, RpiB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  101 bits (253), Expect = 5e-27
 Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 2/129 (1%)

Query: 13  LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIG--AEVGRRVSSSDSSETTT 70
           +++  GAD  G ELK  ++ HL+    +  D G   Y +           ++   ++  +
Sbjct: 2   MRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVADPGS 61

Query: 71  RGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEI 130
            G+V  G+G G  I ANK PG       +   A   R  NN  ++ + G   +   A+ I
Sbjct: 62  LGIVLGGSGNGEQIAANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAI 121

Query: 131 LDTWLKTPF 139
           +D ++ TP+
Sbjct: 122 VDAFVTTPW 130

>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]} Length = 159

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Alternate ribose 5-phosphate isomerase B, RpiB
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (252), Expect = 6e-27
 Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 9/131 (6%)

Query: 14  KIIAGADSFGAELKDALVSHLRSLNIDVEDLGT-----SDYYSIGAEVGRRVSSSDSSET 68
           KI  G D  G  LK  +V+HL    ++V D GT     +DY    ++V   V+  +    
Sbjct: 16  KIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGGEV--- 72

Query: 69  TTRGLVACGTGVGVAIFANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAV 128
              G++ CGTGVG++I ANK  G+ A  C  P  A  +R  N+ NVLA        E A 
Sbjct: 73  -DGGILICGTGVGISIAANKFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAK 131

Query: 129 EILDTWLKTPF 139
            I+D WL   +
Sbjct: 132 MIVDAWLGAQY 142

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]} Length = 144

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

 Score = 70.0 bits (171), Expect = 2e-15
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 6/101 (5%)

Query: 201 IPGGSMKIIRESP----TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFD 256
             G   K++  SP     +AI    AGS   AH H    +  + +GK  V          
Sbjct: 27  TGGIRWKLLHVSPEMGSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDVRGGKAAGGDT 86

Query: 257 LTVGDYLFTPAGDVHR-VKYYEETEFFIKWDGRWDMFFDED 296
                Y +  A   H   ++   +EF++ + G    F   D
Sbjct: 87  AIAPGYGYESANARHDKTEFPVASEFYMSFLGPL-TFVKPD 126

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 50.9 bits (121), Expect = 6e-08
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 215 SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           + +     G V P+H H       ++EGK   +    GER  +  GD++ TP    H   
Sbjct: 56  AGLQLIMPGEVAPSHRHNQSALRFIVEGK-GAFTAVDGERTPMNEGDFILTPQWRWHDHG 114

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]} Length = 308

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (105), Expect = 6e-06
 Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 4/68 (5%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGK-KSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
            +     G        T      V+EG  + +      E F  +  D    P       +
Sbjct: 225 FLQLLPKGFASRVARTTDSTIYHVVEGSGQVIIG---NETFSFSAKDIFVVPTWHGVSFQ 281

Query: 275 YYEETEFF 282
             +++  F
Sbjct: 282 TTQDSVLF 289

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Length = 355

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

 Score = 47.8 bits (113), Expect = 6e-07
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 215 SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           S I   KAG    AH H       ++EG    + +  G + +L   D++ TP G  H   
Sbjct: 87  SGIQTMKAGERAGAHRHAASALRFIMEGS-GAYTIVDGHKVELGANDFVLTPNGTWHEHG 145

Query: 275 YYEETEFFIKWDGRWDMFF 293
             E     I  DG      
Sbjct: 146 ILESGTECIWQDGLDIPLT 164

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]} Length = 355

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 211 ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDV 270
            +  +++   + G    AH HT      V +G+        G+RFD +  D    PA   
Sbjct: 254 LTMGASMQMLRPGEHTKAHRHTGNVIYNVAKGQGYSI--VGGKRFDWSEHDIFCVPAWTW 311

Query: 271 HR 272
           H 
Sbjct: 312 HE 313

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 211 ESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAG 268
            SPT  + I         P H H+      V+EG + VW +  G+   ++ GD L TP  
Sbjct: 83  ISPTMWAGIQYLGPRETAPEHRHSQNAFRFVVEG-EGVWTVVNGDPVRMSRGDLLLTPGW 141

Query: 269 DVH 271
             H
Sbjct: 142 CFH 144

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]} Length = 351

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 212 SPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGK-KSVWNLTKGERFDLTVGDYLFTPAGDV 270
           +      R +AG+     +        V EG    V N   GE   L  GD    P+   
Sbjct: 262 TLRCEFHRLRAGTETATRNEVGSTVFQVFEGAGAVVMN---GETTKLEKGDMFVVPSWVP 318

Query: 271 HRVKYYEETEFF 282
             ++   + + F
Sbjct: 319 WSLQAETQFDLF 330

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 201 IPGGSMKIIRESPTS------AIVRFKAGSVEPAHHHTFGHDL-VVLEGKKSVWNLTKGE 253
                  ++    ++       ++    G   P H H   H+  +VL+GK  +     GE
Sbjct: 24  FGRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLELTL--DGE 81

Query: 254 RFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW--DGRWDMFFDEDLETAKKAVEKETA 309
           R+ L  GDY   PAG  H  +        + +   G     +         A     A
Sbjct: 82  RYLLISGDYANIPAGTPHSYRMQSHRTRLVSYTMKGNVAHLYSVIGNPYDHAEHPPYA 139

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]} Length = 330

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 216 AIVRFKAGSVEPAHHHTFGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
                  G     H+H +  +    LEG+ ++W  T G+   L  GD+L  PA  VH  +
Sbjct: 217 VSSEGPKGDRIVDHYHEYHTETFYCLEGQMTMW--TDGQEIQLNPGDFLHVPANTVHSYR 274

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Length = 112

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 42.7 bits (100), Expect = 4e-06
 Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 195 LNPVEMIPGGSMKIIR------ESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWN 248
           L+  + +     +++       +     +     G     H       + +L G   +  
Sbjct: 13  LDLTQEVMIEQDQMLSRTLVQRQDLGITVFSLDKGQEIGRHSSPGDAMVTILSGLAEIT- 71

Query: 249 LTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281
               E + +  G  +  PAG  H +   E  + 
Sbjct: 72  -IDQETYRVAEGQTIVMPAGIPHALYAVEAFQM 103

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Length = 250

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

 Score = 42.4 bits (99), Expect = 3e-05
 Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 10/103 (9%)

Query: 188 CLVKNRELNPVEMIPGGSMKIIRESPTSA-------IVRFKAGSVEPAHH-HTFGHDLVV 239
            +    +  P E      + +    P          I+ F+ G+       H   H   +
Sbjct: 136 VVGSIHDQQPEEYEGMTDVLLWSLLPKEFDFDMNMHILSFEPGASHAYIETHVQEHGAYL 195

Query: 240 LEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282
           + G+         E + +  GDY+F  A            E  
Sbjct: 196 ISGQ--GMYNLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPL 236

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]} Length = 250

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 4/60 (6%)

Query: 217 IVRFKAGSVEPAHHHTFGHD--LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           I  F     +       G    + V++G+  V +    E  +L  G Y +        + 
Sbjct: 52  IATFHKNGQQTTGFGGDGIQTLVYVIDGRLRVSD--GQETHELEAGGYAYFTPEMKMYLA 109

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           +    +    P           V EG+  V  +      +L  GD  F P G   +  
Sbjct: 254 MSTTPSTVTVPTWSFPGACAFQVQEGRVVVQ-IGDYAATELGSGDVAFIPGGVEFKYY 310

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]} Length = 348

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 6/75 (8%)

Query: 227 PAHHHTFGHD-LVVLEGKKSVW---NLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF 282
             H H   ++     +G   +W        +   L+ GDY   P    H  +  +     
Sbjct: 62  LPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRVLSSGDYGSVPRNVTHTFQIQDPDTEM 121

Query: 283 IKW--DGRWDMFFDE 295
                 G ++  F  
Sbjct: 122 TGVIVPGGFEDLFYY 136

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 193 RELNPVEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG 252
           R ++  +M     + I+   P         G +  A  H   H L VLEGK         
Sbjct: 178 RFVDMSDMRHDMHVNIVNFEPG--------GVIPFAETHVMEHGLYVLEGKAVYR--LNQ 227

Query: 253 ERFDLTVGDYLFTPAGDVHRVK 274
           +  ++  GD+++  A       
Sbjct: 228 DWVEVEAGDFMWLRAFCPQACY 249

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]} Length = 273

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 20/88 (22%)

Query: 198 VEMIPGGSMKIIRESPTSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDL 257
           VE+ P G                     +P         L V+EG+ S+    +G+   +
Sbjct: 71  VELAPNGGSD------------------KPEQDPNAEAVLFVVEGELSLT--LQGQVHAM 110

Query: 258 TVGDYLFTPAGDVHRVKYYEETEFFIKW 285
             G Y F P G  ++V+          W
Sbjct: 111 QPGGYAFIPPGADYKVRNTTGQHTRFHW 138

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]} Length = 372

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 202 PGGSMKII--RESPTS-----AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT---K 251
            GG  + +  RE P S       +R K G++   H H       ++ G   V  +    +
Sbjct: 54  KGGYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGR 113

Query: 252 GERFDLTVGDYLFTPAGDVH 271
               D+  GD  + P+G  H
Sbjct: 114 SFIDDVGEGDLWYFPSGLPH 133

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK-Y 275
                AG+   A    +     VL G+  V     GE   L   DY++ PAG+ H +   
Sbjct: 54  TAEMPAGA--QATESVYQRFAFVLSGEVDVA--VGGETRTLREYDYVYLPAGEKHMLTAK 109

Query: 276 YEETEFFIKWDGRWDMFFD 294
            +      +   +      
Sbjct: 110 TDARVSVFEKPYQTVEGVQ 128

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]} Length = 245

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 10/97 (10%)

Query: 193 RELNPVEMIPGGSMKIIRESPTSA-------IVRFKAGSVEPAHH-HTFGHDLVVLEGKK 244
           RE           +   +  P           + F  G+  P    H   H L++LEG+ 
Sbjct: 138 RENPGYPFEGDDHLIARKLLPDEPAFDFMVSTMSFAPGASLPYAEVHYMEHGLLMLEGEG 197

Query: 245 SVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEF 281
                 +   + +T GD ++  A              
Sbjct: 198 LYK--LEENYYPVTAGDIIWMGAHCPQWYGALGRNWS 232

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 217 IVRFKAGSVEPAHH-HTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY 275
           I+ F  G+       H   H   +L G+             +  GDY+F  A  +     
Sbjct: 175 ILSFAPGASHGYIETHVQEHGAYILSGQGVYN--LDNNWIPVKKGDYIFMGAYSLQAGYG 232

Query: 276 YEETEFF 282
               E F
Sbjct: 233 VGRGEAF 239

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]} Length = 253

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 217 IVRFKAGSVEPAHHHTFGHDLV--VLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVK 274
           +V               G +    V+ G  +     +G+ F L+ G YL+ P G +    
Sbjct: 55  LVTLHQNGGNQQGFGGEGIETFLYVISGNITAK--AEGKTFALSEGGYLYCPPGSLMTFV 112

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]} Length = 170

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHRV 273
              + K  ++   HH      L VL G+  +  +   +R  ++L  GD    PAG  + +
Sbjct: 47  VQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYL 106

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 214 TSAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRV 273
               V F+ G+    H H  G  L+V  G K  +         L  GD +  P   VH  
Sbjct: 36  QVYDVVFEPGARTHWHSHPGGQILIVTRG-KGFYQERGKPARILKKGDVVEIPPNVVHWH 94

Query: 274 KYYEETEFFI 283
               + E   
Sbjct: 95  GAAPDEELVH 104

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]} Length = 203

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHRV 273
                K  ++   HH    + +V+L G   +  +   +R  ++L  GD L  PAG  + V
Sbjct: 43  LEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYV 102

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]} Length = 114

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.6 bits (81), Expect = 0.002
 Identities = 17/90 (18%), Positives = 41/90 (45%), Gaps = 7/90 (7%)

Query: 197 PVEMIPGGSMKII---RESPTSAIVRF--KAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK 251
             + + G   +++   +++P   +  F  + G +   H H + H++ VL+GK  +  L +
Sbjct: 15  STDKVRGVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGK--LTVLKE 72

Query: 252 GERFDLTVGDYLFTPAGDVHRVKYYEETEF 281
                +  G Y+F    ++H  +   ++E 
Sbjct: 73  QGEETVEEGFYIFVEPNEIHGFRNDTDSEV 102

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]} Length = 122

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 217 IVRFKAGSVEPAHHHTFGHD----LVVLEGKKSVW--NLTKGERFDLTVGDYLFTPAGDV 270
           +V     + + A  +  GH     L VLEG+  +   +    +   L  G  +F      
Sbjct: 45  VVDVLTDNPDDAKFN-SGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVP 103

Query: 271 HRVK 274
           H   
Sbjct: 104 HAFT 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1o1xa_	145	Putative sugar-phosphate isomerase {Thermotoga mar	100.0
d1nn4a_	159	Alternate ribose 5-phosphate isomerase B, RpiB {Es	100.0
d2vvpa1	156	Alternate ribose 5-phosphate isomerase B, RpiB {My	100.0
d1vj2a_	114	Hypothetical protein TM1459 {Thermotoga maritima [	99.47
d2b8ma1	108	Hypothetical protein MJ0764 {Archaeon Methanococcu	99.44
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	99.38
d1o4ta_	115	Hypothetical protein TM1287 {Thermotoga maritima [	99.36
d1y9qa2	99	Probable transcriptional regulator VC1968, C-termi	99.35
d1v70a_	105	Hypothetical protein TTHA0104 {Thermus thermophilu	99.34
d1lr5a_	160	Auxin binding protein {Maize (Zea mays) [TaxId: 45	99.25
d2f4pa1	134	Hypothetical protein TM1010 {Thermotoga maritima [	99.2
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	99.1
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	99.09
d2bnma2	122	Hydroxypropylphosphonic acid epoxidase Fom4, C-ter	99.08
d2pyta1	128	Ethanolamine utilization protein EutQ {Salmonella	99.06
d2o1qa1	144	Putative acetyl/propionyl-CoA carboxylase subunit	99.06
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	99.02
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	99.0
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.97
d1sefa_	250	Hypothetical protein EF2996 {Enterococcus faecalis	98.96
d1sq4a_	273	Glyoxylate-induced protein PA1140 {Pseudomonas aer	98.9
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.88
d1y3ta1	330	Hypothetical protein YxaG {Bacillus subtilis [TaxI	98.86
d1rc6a_	253	Hypothetical protein YlbA {Escherichia coli [TaxId	98.86
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.83
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	98.83
d2et1a1	201	Germin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.8
d1sfna_	245	Hypothetical protein DR1152 {Deinococcus radiodura	98.76
d1x82a_	190	Glucose-6-phosphate isomerase, GPI {Archaeon Pyroc	98.72
d1j58a_	372	Oxalate decarboxylase OxdC (YvrK) {Bacillus subtil	98.71
g1dgw.1	168	Seed storage 7S protein {Jack bean (Canavalia ensi	98.7
d1fxza2	174	Seed storage 7S protein {Soybean (Glycine max), pr	98.67
d1uija1	170	Seed storage 7S protein {Soybean (Glycine max), be	98.67
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.65
d2d40a1	308	Gentisate 1,2-dioxygenase {Escherichia coli [TaxId	98.63
d1dgwa_	178	Seed storage 7S protein {Jack bean (Canavalia ensi	98.6
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.59
d1od5a2	173	Seed storage 7S protein {Soybean (Glycine max), gl	98.58
d2phla2	162	Seed storage 7S protein {French bean (Phaseolus vu	98.55
d1uika1	203	Seed storage 7S protein {Soybean (Glycine max), be	98.54
d2phda1	351	Gentisate 1,2-dioxygenase {Pseudaminobacter salicy	98.48
d1uika2	185	Seed storage 7S protein {Soybean (Glycine max), be	98.47
d3bu7a1	355	Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [	98.46
d1juha_	348	Quercetin 2,3-dioxygenase {Aspergillus japonicus [	98.42
d2phla1	200	Seed storage 7S protein {French bean (Phaseolus vu	98.16
d2arca_	161	Regulatory protein AraC {Escherichia coli [TaxId:	98.05
d1zrra1	179	Acireductone dioxygenase {Klebsiella pneumoniae [T	98.0
d1vr3a1	179	Acireductone dioxygenase {Mouse (Mus musculus) [Ta	97.79
d1od5a1	245	Seed storage 7S protein {Soybean (Glycine max), gl	97.78
d1fxza1	239	Seed storage 7S protein {Soybean (Glycine max), pr	97.77
d2pa7a1	135	dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Ane	97.58
d1yfua1	174	3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia m	97.51
d1zvfa1	175	3-hydroxyanthranilate-3,4-dioxygenase {Baker's yea	97.43
d1o5ua_	88	Hypothetical protein TM1112 {Thermotoga maritima [	97.13
d1vrba1	319	Putative asparaginyl hydroxylase YxbC {Bacillus su	97.08
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	96.78
d2gm6a1	192	Cysteine dioxygenase type I {Ralstonia eutropha [T	96.58
d3elna1	186	Cysteine dioxygenase type I {Rattus norvegicus [Ta	96.16
d1wlta1	176	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	95.24
d3dl3a1	96	Tellurite resistance protein B, TehB {Vibrio fisch	95.12
d3bb6a1	109	Uncharacterized protein YeaR {Escherichia coli [Ta	95.05
d1dzra_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmone	94.92
d2ixca1	198	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobac	94.92
d1h2ka_	335	Hypoxia-inducible factor HIF ihhibitor (FIH1) {Hum	94.75
d2c0za1	190	Novobiocin biosynthesis protein NovW {Streptomyces	94.66
d1j1la_	288	Pirin {Human (Homo sapiens) [TaxId: 9606]}	94.44
d1nxma_	194	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Strepto	94.42
d1eyba_	439	Homogentisate dioxygenase {Human (Homo sapiens) [T	94.38
d1ep0a_	183	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeo	94.24
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	93.44
d2ixha1	184	dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudom	93.3
d1oi6a_	202	dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amyc	93.13
d1mkza_	170	MoaB {Escherichia coli [TaxId: 562]}	92.32
d1y5ea1	155	MoaB {Bacillus cereus [TaxId: 1396]}	91.31
d1e5ra_	290	Type II Proline 3-hydroxylase (proline oxidase) {S	90.5
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	90.37
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	83.84
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	83.68
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	83.3
d1ywka1	260	5-keto-4-deoxyuronate isomerase KduI {Enterococcus	83.05
d1p5dx1	146	Phosphomannomutase/phosphoglucomutase {Pseudomonas	82.5
d1qwra_	315	Mannose-6-phosphate isomerase ManA {Bacillus subti	82.48
d1v7ra_	186	XTP pyrophosphatase {Archaeon Pyrococcus horikoshi	82.12
d1zx5a1	299	Putative mannosephosphate isomerase AF0035 {Archae	82.06
d1tq5a1	231	Hypothetical protein YhhW {Escherichia coli [TaxId	81.14
d1pmia_	440	Phosphomannose isomerase {Yeast (Candida albicans)	80.88

>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Putative sugar-phosphate isomerase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.7e-55  Score=367.17  Aligned_cols=139  Identities=36%  Similarity=0.497  Sum_probs=132.8

Q ss_pred             CCcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhh
Q 021698           11 HPLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIF   85 (309)
Q Consensus        11 ~~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~   85 (309)
                      +.|||+|||||+||+||++|++||+++||+|+|+|++     |||+++.+||+.|++    +++++||++||||+||+|+
T Consensus         1 ~~mkI~igsDh~G~~lK~~l~~~L~~~g~~v~D~G~~~~~~~dYpd~a~~va~~v~~----~~~~~GIliCGtG~G~sia   76 (145)
T d1o1xa_           1 HHVKIAIASDHAAFELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILS----NEADFGILLCGTGLGMSIA   76 (145)
T ss_dssp             CCCEEEEEECSTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSCSEEEEEESSSHHHHHH
T ss_pred             CCcEEEEEeCChHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCccHHHHHHHHHHhc----CcccEEEEecCCcHHHHHH
Confidence            4699999999999999999999999999999999985     699999999999999    8999999999999999999


Q ss_pred             hcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHh
Q 021698           86 ANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSC  157 (309)
Q Consensus        86 aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~  157 (309)
                      ||||||||||+|+|+++|+|+|+||||||||||+|+++++.|++|+++||+|+|++    +++++++++|.+
T Consensus        77 ANK~~GIRAa~~~d~~~A~~ar~hNnaNvL~lGa~~~~~~~a~~iv~~~l~t~F~g----gRh~~Rv~ki~~  144 (145)
T d1o1xa_          77 ANRYRGIRAALCLFPDMARLARSHNNANILVLPGRLIGAELAFWIVDTFLSTPFDG----GRHERRIRKIDE  144 (145)
T ss_dssp             HTTSTTCCEEECSSHHHHHHHHHTTCCSEEEEETTTSCHHHHHHHHHHHHHCCCCC----TTHHHHHHHHTC
T ss_pred             HHcCCCCeeeeecCHHHHHHHHHhcCceEEEEccEecCHHHHHHHHHHHHCCCCCC----CcHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999986    688888777653

>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B, RpiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Alternate ribose 5-phosphate isomerase B, RpiB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-54  Score=365.93  Aligned_cols=138  Identities=34%  Similarity=0.504  Sum_probs=132.7

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-----CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhc
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-----DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFAN   87 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-----~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aN   87 (309)
                      +||+|||||+||+||++|++||+++||+|+|+|++     |||+++.+||+.|.+    ++.++||+|||||+||+|+||
T Consensus        15 kkI~igsDhaG~~lK~~l~~~L~~~g~~V~D~G~~~~~~~DYpd~a~~va~~v~~----~~~~~GIliCGtG~G~~IaAN   90 (159)
T d1nn4a_          15 KKIAFGCDHVGFILKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAG----GEVDGGILICGTGVGISIAAN   90 (159)
T ss_dssp             SEEEEEECTTTHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHT----TSSSEEEEEESSSHHHHHHHH
T ss_pred             eEEEEEeCCchHHHHHHHHHHHHHCCCEEEECCCCcccccCccHHHHHHHHHHHh----ccceeEEEecCCchHHHHHHH
Confidence            49999999999999999999999999999999985     599999999999998    999999999999999999999


Q ss_pred             CCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhH
Q 021698           88 KNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCF  158 (309)
Q Consensus        88 K~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~  158 (309)
                      |+||||||+|+|+++|+|+|+||||||||||+|++++++|++|+++||+|+|++    +++.++++.|..+
T Consensus        91 K~~GIRAa~~~d~~sA~~ar~HNnaNVL~lGar~~~~~~a~~iv~~fl~t~F~g----gRh~~Rv~ki~~~  157 (159)
T d1nn4a_          91 KFAGIRAVVCSEPYSAQLSRQHNDTNVLAFGSRVVGLELAKMIVDAWLGAQYEG----GRHQQRVEAITAI  157 (159)
T ss_dssp             TSTTCCEEECSSHHHHHHHHHHHCCCEEEEETTTBCHHHHHHHHHHHHHCCCCC----TTHHHHHHHHHHH
T ss_pred             hccCceeeeecchHHHHHHHHhcCCcEEEecceecCHHHHHHHHHHHHcCCCCC----ccHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999987    7889888887654

>d2vvpa1 c.121.1.1 (A:3-158) Alternate ribose 5-phosphate isomerase B, RpiB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Ribose/Galactose isomerase RpiB/AlsB
superfamily: Ribose/Galactose isomerase RpiB/AlsB
family: Ribose/Galactose isomerase RpiB/AlsB
domain: Alternate ribose 5-phosphate isomerase B, RpiB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.2e-54  Score=367.22  Aligned_cols=142  Identities=26%  Similarity=0.399  Sum_probs=134.7

Q ss_pred             CcEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC------CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhh
Q 021698           12 PLKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIF   85 (309)
Q Consensus        12 ~mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~   85 (309)
                      .|||+|||||+||+||++|++||+++||+|+|+|++      |||+++.+||+.|.+    ++++|||+|||||+||+|+
T Consensus         1 ~MKI~igsDh~G~~LK~~l~~~L~~~g~~viD~G~~~~~~~~dYpd~a~~va~~v~~----~~~~~GIliCGtG~G~sIa   76 (156)
T d2vvpa1           1 GMRVYLGADHAGYELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVA----DPGSLGIVLGGSGNGEQIA   76 (156)
T ss_dssp             CCEEEEEECHHHHHHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHH----STTCEEEEEESSSHHHHHH
T ss_pred             CCEEEEEeCCcHHHHHHHHHHHHHHCCCEEEecCCCcccCCCchhHHHHHHHHHhhc----cccceEEEeecCcHHHHHH
Confidence            389999999999999999999999999999999984      599999999999999    8999999999999999999


Q ss_pred             hcCCCceEEEEeCCHHHHHHHHhhcCcceeeecccccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhh
Q 021698           86 ANKNPGVFATTCLTPADALNTRSINNCNVLAVSGMSTSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFD  160 (309)
Q Consensus        86 aNK~~giraa~~~~~~~A~~~r~hNnaNvl~~g~~~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~  160 (309)
                      |||+||||||+|+|+++|+|||+|||+||||||+|++++++|++|+++||+|+|..   .++++++++.|.++-.
T Consensus        77 ANK~~GIRAal~~d~~~A~~ar~hNnaNVL~lGa~~~~~~~a~~iv~~~l~t~F~~---ggRh~~Rv~ki~~~e~  148 (156)
T d2vvpa1          77 ANKVPGARCALAWSVQTAALAREHNNAQLIGIGGRMHTVAEALAIVDAFVTTPWSK---AQRHQRRIDILAEYER  148 (156)
T ss_dssp             HHTSTTCCEEECCSHHHHHHHHHTTCCSEEEEEGGGSCHHHHHHHHHHHHHSCCCC---CHHHHHHHHHHHHHHH
T ss_pred             HHhhcCeEeeeeCCHHHHHHHHHhcCCcEEEEcceecCHHHHHHHHHHHHcCCCCC---CChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999962   4789999988877654

>d1vj2a_ b.82.1.10 (A:) Hypothetical protein TM1459 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hypothetical protein TM1459
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=1.1e-13  Score=109.36  Aligned_cols=79  Identities=20%  Similarity=0.394  Sum_probs=66.7

Q ss_pred             CceEEEeeeCCC-----eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC
Q 021698          203 GGSMKIIRESPT-----SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       203 gg~~~il~~~~~-----~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~  277 (309)
                      |...+.+.....     ...++++||+..+.|+|+..|++||++|++++  .++++.+.+++||++|+|+|.+|++.|.+
T Consensus        21 G~~~~~l~~~~~~~~~~~~~~~i~pG~~~~~H~H~~~e~~~vl~G~~~~--~~~~~~~~l~~Gd~~~ip~~~~H~~~n~~   98 (114)
T d1vj2a_          21 GVRKRVLIGLKDAPNFVMRLFTVEPGGLIDRHSHPWEHEIFVLKGKLTV--LKEQGEETVEEGFYIFVEPNEIHGFRNDT   98 (114)
T ss_dssp             EEEEEEEECTTTCSSEEEEEEEEEEEEEEEEECCSSCEEEEEEESEEEE--ECSSCEEEEETTEEEEECTTCCEEEECCS
T ss_pred             CEEEEEEeCCCCCCceEEEEEEECCCCCCCceECCCcEEEEEEEceeEE--EEeeeeeEEecCeEEEEcCCCeEEEEeCC
Confidence            555555543321     25688999999999999999999999999999  78999999999999999999999999999


Q ss_pred             CeEEEE
Q 021698          278 ETEFFI  283 (309)
Q Consensus       278 d~~~~i  283 (309)
                      +.++.+
T Consensus        99 ~~~~~~  104 (114)
T d1vj2a_          99 DSEVEF  104 (114)
T ss_dssp             SSCEEE
T ss_pred             CCCEEE
Confidence            776643

>d2b8ma1 b.82.1.18 (A:1-108) Hypothetical protein MJ0764 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: MJ0764-like
domain: Hypothetical protein MJ0764
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.44  E-value=5.5e-13  Score=104.77  Aligned_cols=81  Identities=9%  Similarity=0.151  Sum_probs=65.7

Q ss_pred             CCceEEEeeeCCC--eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCe-EEEecCCcEEEECCCCcEEEEEcCC
Q 021698          202 PGGSMKIIRESPT--SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGE-RFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       202 pgg~~~il~~~~~--~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~-~~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      ++..++.+.....  ...++++||...+.|+|+..+++|||+|++.+  .++++ .+.+++||++++|+|++|+++|.++
T Consensus        13 ~~~~~~~l~~~~~~~v~~~~l~pG~~~p~H~H~~~e~~~Vl~G~~~~--~v~~~e~~~v~~Gd~i~ip~~~~H~~~n~~~   90 (108)
T d2b8ma1          13 KTKVVEKLVNTEHVQINHIVLPRGEQMPKHYSNSYVHLIIIKGEMTL--TLEDQEPHNYKEGNIVYVPFNVKMLIQNINS   90 (108)
T ss_dssp             CSCEEEEEEECSSCEEEEEEEETTCBCCCEECSSCEEEEEEESEEEE--EETTSCCEEEETTCEEEECTTCEEEEECCSS
T ss_pred             CceEEEEEEcCCCEEEEEEEECCCCcChhhcccccEEEEEEeeeEEE--EEecccEEEeecceEeeccCCceEEEEcCCC
Confidence            4444444433332  36789999999999999999999999999999  66774 6899999999999999999999998


Q ss_pred             eEEEEE
Q 021698          279 TEFFIK  284 (309)
Q Consensus       279 ~~~~i~  284 (309)
                      ..+.++
T Consensus        91 e~l~~l   96 (108)
T d2b8ma1          91 DILEFF   96 (108)
T ss_dssp             SEEEEE
T ss_pred             CcEEEE
Confidence            766443

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.38  E-value=1.8e-12  Score=102.02  Aligned_cols=67  Identities=16%  Similarity=0.269  Sum_probs=62.2

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      .++.++||...++|+|+..+++||++|++++  .++++.+.+++||++++|+|++|+++|.++..++++
T Consensus        40 ~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~--~~~~~~~~l~~Gd~~~ip~~~~H~~~a~~~~~~l~~  106 (112)
T d1yhfa1          40 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEI--TIDQETYRVAEGQTIVMPAGIPHALYAVEAFQMLLV  106 (112)
T ss_dssp             EEEEECTTCEEEEECCSSEEEEEEEESEEEE--EETTEEEEEETTCEEEECTTSCEEEEESSCEEEEEE
T ss_pred             EEEEECCCCCcceEECCCCEEEEEEeCEEEE--EEccEEEEecCCEEEEcCCCCeEEeEECCCcEEEEE
Confidence            5688999999999999999999999999999  789999999999999999999999999998877644

>d1o4ta_ b.82.1.9 (A:) Hypothetical protein TM1287 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1287
species: Thermotoga maritima [TaxId: 2336]

Probab=99.36  E-value=1.2e-12  Score=103.59  Aligned_cols=66  Identities=23%  Similarity=0.323  Sum_probs=59.2

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      ..++++||+..++|+|+. +|++||++|++++  ..+++.+.+++||++++|+|.+|+++|.+++++.+
T Consensus        42 ~~~~~~PG~~~~~H~H~~~~E~~~vl~G~~~~--~~~~~~~~l~~Gd~~~ip~g~~H~~~N~g~~~~~~  108 (115)
T d1o4ta_          42 ARMKLPPGSSVGLHKHEGEFEIYYILLGEGVF--HDNGKDVPIKAGDVCFTDSGESHSIENTGNTDLEF  108 (115)
T ss_dssp             EEEEECTTCEEEEEECCSEEEEEEEEESEEEE--EETTEEEEEETTEEEEECTTCEEEEECCSSSCEEE
T ss_pred             EEEEECCCCCcCCEECCCCcEEEEEEECcceE--EEcCeeEEeeccEEEEECCCCeEEEEECCCCCEEE
Confidence            357899999999999986 5788999999999  68999999999999999999999999999876543

>d1y9qa2 b.82.1.15 (A:83-181) Probable transcriptional regulator VC1968, C-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Probable transcriptional regulator VC1968, C-terminal domain
domain: Probable transcriptional regulator VC1968, C-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=99.35  E-value=2.4e-12  Score=99.28  Aligned_cols=68  Identities=16%  Similarity=0.121  Sum_probs=60.7

Q ss_pred             EEEEEcCCCcC--CccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698          216 AIVRFKAGSVE--PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~v~l~pG~~~--p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~  285 (309)
                      .+++++||+..  +.|+|...|++||++|++++  .++++.+.|++||++++|++++|++.|.++..+++.+
T Consensus        25 ~~~~l~pg~~~~~~~H~h~~~E~~~Vl~G~~~~--~~~~~~~~l~~GD~~~~~~~~~H~~~n~~~~~~~~~v   94 (99)
T d1y9qa2          25 FEITLLDHHQQMSSPHALGVIEYIHVLEGIMKV--FFDEQWHELQQGEHIRFFSDQPHGYAAVTEKAVFQNI   94 (99)
T ss_dssp             EEEEECTTCEEEECCCSTTCEEEEEEEESCEEE--EETTEEEEECTTCEEEEECSSSEEEEESSSCEEEEEE
T ss_pred             EEEEEeCCcEeccccccCCcEEEEEEEcCceEE--EecceEEEecCCCEEEECCCCeEEEEeCCccCEEEEE
Confidence            46889999865  67888889999999999999  6899999999999999999999999999988776544

>d1v70a_ b.82.1.9 (A:) Hypothetical protein TTHA0104 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TTHA0104
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=3.6e-12  Score=98.31  Aligned_cols=67  Identities=24%  Similarity=0.270  Sum_probs=60.3

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      .+++++||+..++|+|+. +|++||++|++++  .++++++.+++||++++|+|++|+++|.+++.+.++
T Consensus        31 ~~~~~~PG~~~~~H~H~~~~e~~~vl~G~~~~--~~~~~~~~l~~Gd~~~~p~~~~H~~~n~g~~~~~~l   98 (105)
T d1v70a_          31 DLYALLPGQAQKVHVHEGSDKVYYALEGEVVV--RVGEEEALLAPGMAAFAPAGAPHGVRNESASPALLL   98 (105)
T ss_dssp             EEEEECTTCEEEEECCSSCEEEEEEEESCEEE--EETTEEEEECTTCEEEECTTSCEEEECCSSSCEEEE
T ss_pred             EEEEECCCCCCcceECCCCeEEEEEEeeEEEE--EEeeeEEEecceEEEEeCCCCEEEeEECCCCCEEEE
Confidence            577899999999999986 5788999999999  689999999999999999999999999997766544

>d1lr5a_ b.82.1.2 (A:) Auxin binding protein {Maize (Zea mays) [TaxId: 4577]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Auxin binding protein
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.25  E-value=1.1e-11  Score=103.66  Aligned_cols=61  Identities=23%  Similarity=0.356  Sum_probs=55.9

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC---------eEEEecCCcEEEECCCCcEEEEEcCC
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG---------ERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~---------~~~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      .+.+++||+..+.|+|..+|++||++|++.+  .+++         +.+.|++||++++|+|++|+++|.++
T Consensus        44 ~~~~l~PG~~~~~H~H~~~e~~~Vl~G~g~~--~i~~~~~~~~~~~~~~~l~~Gd~~~iP~~~~H~~~N~g~  113 (160)
T d1lr5a_          44 WLQTISPGQRTPIHRHSCEEVFTVLKGKGTL--LMGSSSLKYPGQPQEIPFFQNTTFSIPVNDPHQVWNSDE  113 (160)
T ss_dssp             EEEEECTTCBCCEEEESSCEEEEEEECCEEE--EECCSSSSSCCSCEEEEECTTEEEEECTTCCEEEECCCS
T ss_pred             EEEEECCCccccceeccccEEEEEEeeeEEE--EECCccccccccceEEEecCCCEEEeCCCCcEEEEECCC
Confidence            5678999999999999999999999999999  4555         77999999999999999999999985

>d2f4pa1 b.82.1.9 (A:2-135) Hypothetical protein TM1010 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein TM1010
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=2.4e-11  Score=99.11  Aligned_cols=66  Identities=26%  Similarity=0.190  Sum_probs=58.2

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..++++||+..++|+|+.+|++|||+|++.++ ..+++.+.++|||++|+|||++|+..+.++..+.
T Consensus        38 ~~vtf~PG~~~~~H~H~~~q~~~Vl~G~~~~~-~~g~~~~~~~~Gd~v~ippg~~H~~~a~~~~~~~  103 (134)
T d2f4pa1          38 YDVVFEPGARTHWHSHPGGQILIVTRGKGFYQ-ERGKPARILKKGDVVEIPPNVVHWHGAAPDEELV  103 (134)
T ss_dssp             EEEEECTTCEECSEECTTCEEEEEEEEEEEEE-ETTSCCEEEETTCEEEECTTCCEEEEEBTTBCEE
T ss_pred             EEEEECCCCcCccccCCCCEEEEEEeCEEEEE-ECCcceEEEcCCCeEEECCCCceECccCCCCcEE
Confidence            57899999999999999999999999999994 2355668999999999999999999998877553

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.10  E-value=4.4e-10  Score=100.16  Aligned_cols=64  Identities=20%  Similarity=0.310  Sum_probs=58.1

Q ss_pred             EEEEEcCCCcCCc-cccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC-CeEE
Q 021698          216 AIVRFKAGSVEPA-HHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEF  281 (309)
Q Consensus       216 ~~v~l~pG~~~p~-H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~  281 (309)
                      .++.++||+..+. |+|..+|++||++|++++  .++++++.+++||++|+||+++|++.|.| +..+
T Consensus       171 ~~~~~~PG~~~~~~h~h~~ee~~~vl~G~~~~--~~~~~~~~~~~GD~i~~~~~~pH~~~n~G~~~~~  236 (250)
T d1sefa_         171 HILSFEPGASHAYIETHVQEHGAYLISGQGMY--NLDNEWYPVEKGDYIFMSAYVPQAAYAVGREEPL  236 (250)
T ss_dssp             EEEEECTTCBCSSCBCCSCCEEEEEEECEEEE--EETTEEEEEETTCEEEECTTCCEEEEEECSSSCE
T ss_pred             EEEEECCCCccCccCccCceEEEEEeCCEEEE--EECCEEEEecCCCEEEECCCCCEEeEcCCCCCcE
Confidence            5789999999985 888899999999999999  78999999999999999999999999998 4443

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.09  E-value=5.7e-10  Score=99.19  Aligned_cols=65  Identities=20%  Similarity=0.235  Sum_probs=59.5

Q ss_pred             EEEEEcCCCcCCcc-ccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAH-HHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H-~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+++++||+..+.| +|..+|.+|||+|++++  .++++.+.+++||++|+|++++|++.|.+++.+.
T Consensus       168 ~~~~~~PG~~~~~~~~h~~ee~~~vl~G~~~~--~i~~~~~~v~~GD~i~~~~~~~H~~~n~g~~~~~  233 (245)
T d1sfna_         168 STMSFAPGASLPYAEVHYMEHGLLMLEGEGLY--KLEENYYPVTAGDIIWMGAHCPQWYGALGRNWSK  233 (245)
T ss_dssp             EEEEECTTCBCSSCBCCSSCEEEEEEECEEEE--EETTEEEEEETTCEEEECTTCCEEEEEESSSCEE
T ss_pred             EEEEEccCceeeceecCCceEEEEEeCCEEEE--EECCEEEEecCCCEEEECCCCCEeeEeCCCCCEE
Confidence            57899999999886 58899999999999999  7899999999999999999999999999977654

>d2bnma2 b.82.1.10 (A:77-198) Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1459-like
domain: Hydroxypropylphosphonic acid epoxidase Fom4, C-terminal domain
species: Streptomyces wedmorensis [TaxId: 43759]

Probab=99.08  E-value=3.3e-10  Score=90.55  Aligned_cols=70  Identities=16%  Similarity=0.042  Sum_probs=56.0

Q ss_pred             EEEEEcCCCcCC---ccccCccEEEEEEeCEEEEEEE--eCCeEEEecCCcEEEECCCCcEEEEEc-CCeEEEEEE
Q 021698          216 AIVRFKAGSVEP---AHHHTFGHDLVVLEGKKSVWNL--TKGERFDLTVGDYLFTPAGDVHRVKYY-EETEFFIKW  285 (309)
Q Consensus       216 ~~v~l~pG~~~p---~H~H~~~e~vyVl~G~l~v~~~--~~~~~~~L~pGd~i~iP~g~~H~~~n~-~d~~~~i~~  285 (309)
                      .++++.|+...+   .|.|..+|++|||+|++++++.  .+++++.|+|||++++|++++|+++|. ++....+++
T Consensus        44 ~~i~v~~~~~~~~~~~~~H~~eE~~yVl~G~~~~~~g~~~~~~~~~l~~GDsi~~~~~~pH~~~n~~g~~~a~~l~  119 (122)
T d2bnma2          44 LVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIA  119 (122)
T ss_dssp             EEEEECCCCGGGCCCCCCCSSCEEEEEEESCEEEEESCTTSCEEEEECTTCEEEECTTCCEEEEESTTSCCEEEEE
T ss_pred             EEEEEeCCCCCccccCCCcccEEEEEEEEEEEEEEEecccCCEEEEEccCcEEEeCCCCCEEEEcCCCCccEEEEE
Confidence            678888887542   3568999999999999999421  134789999999999999999999997 566665554

>d2pyta1 b.82.1.24 (A:100-227) Ethanolamine utilization protein EutQ {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: EutQ-like
domain: Ethanolamine utilization protein EutQ
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.06  E-value=3.7e-10  Score=90.73  Aligned_cols=70  Identities=21%  Similarity=0.451  Sum_probs=56.2

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE-EEEcCCc
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF-IKWDGRW  289 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~-i~~~g~~  289 (309)
                      ..+.+++|..  .|+|+.+|++||++|++++  .++++.+.|++||++++|+|++|+++|.++..++ ++.++.|
T Consensus        57 ~~~~~~~g~~--~~~~~~~E~~~vl~G~~~~--~~~g~~~~l~~Gd~~~~p~g~~h~~~~~~~~~~~~v~~Pa~w  127 (128)
T d2pyta1          57 GFMQWDNAFF--PWTLNYDEIDMVLEGELHV--RHEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFLYVAWPANW  127 (128)
T ss_dssp             EEEEEEEEEE--EEECSSEEEEEEEEEEEEE--EETTEEEEEETTCEEEECTTCEEEEEEEEEEEEEEEEESTTC
T ss_pred             EEEEECCCcc--ceeCCccEEEEEEEeEEEE--EECCEEEEecCCCEEEECCCCEEEEEeCCCEEEEEEECCCCC
Confidence            5677777753  2446788999999999999  6799999999999999999999999999876554 3333334

>d2o1qa1 b.82.1.21 (A:1-144) Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe_A3659 {Rubrivivax gelatinosus [TaxId: 28068]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acetylacetone-cleaving enzyme-like
domain: Putative acetyl/propionyl-CoA carboxylase subunit alpha Mpe A3659
species: Rubrivivax gelatinosus [TaxId: 28068]

Probab=99.06  E-value=7.7e-11  Score=96.94  Aligned_cols=104  Identities=23%  Similarity=0.282  Sum_probs=80.3

Q ss_pred             eecCCCCceee-----cCCceEEEeeeCCC----eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--eEEEec
Q 021698          190 VKNRELNPVEM-----IPGGSMKIIRESPT----SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--ERFDLT  258 (309)
Q Consensus       190 ~~~~~~~~~~~-----~pgg~~~il~~~~~----~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~~~~L~  258 (309)
                      ++..+.+..+.     .+|..+++|+.++.    ..+++++||...|.|+|+..+.+|||+|++++  ..++  ....+.
T Consensus        11 v~~~d~~W~p~~~~~~~~G~~~k~L~~d~~tg~~~~l~r~~~G~~~p~H~H~~~e~~~VL~G~l~~--~~g~~~~g~~~~   88 (144)
T d2o1qa1          11 VQMDQVDWKPFPAAFSTGGIRWKLLHVSPEMGSWTAIFDCPAGSSFAAHVHVGPGEYFLTKGKMDV--RGGKAAGGDTAI   88 (144)
T ss_dssp             CCGGGSCCEECCGGGEESCCEEEEEEEETTTTEEEEEEEECTTEEECCEEESSCEEEEEEEEEEEE--TTCGGGTSEEEE
T ss_pred             EcccCCcceECCcccCCCCeEEEEeeeCCCCCcEEEEEEeCCCcCcCCCccccCEEEEEEEEEEEe--cCCCcCCCceEe
Confidence            34444555443     35778888877654    47899999999999999999999999999988  3221  225677


Q ss_pred             CCcEEEECCCCcEEE-EEcCCeEEEEEEcCCcccccchh
Q 021698          259 VGDYLFTPAGDVHRV-KYYEETEFFIKWDGRWDMFFDED  296 (309)
Q Consensus       259 pGd~i~iP~g~~H~~-~n~~d~~~~i~~~g~~~i~~~~~  296 (309)
                      +|+++|.|+|.+|.. ...+++++++...|.+ .|+++|
T Consensus        89 ~g~y~~~Pag~~H~~~~~~e~~~~~~~~~Gp~-~~ld~d  126 (144)
T d2o1qa1          89 APGYGYESANARHDKTEFPVASEFYMSFLGPL-TFVKPD  126 (144)
T ss_dssp             SSEEEEECTTCEESCCEEEEEEEEEEEEESCE-EEECTT
T ss_pred             CCceeEcCCCCeEccccCCCCEEEEEEEECCe-EEECCC
Confidence            999999999999974 5566788888888886 688887

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=3.9e-10  Score=100.51  Aligned_cols=63  Identities=21%  Similarity=0.272  Sum_probs=55.5

Q ss_pred             EEEEEcCCCcCC-ccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeE
Q 021698          216 AIVRFKAGSVEP-AHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETE  280 (309)
Q Consensus       216 ~~v~l~pG~~~p-~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~  280 (309)
                      .+++++||+..+ .|+|..+|++|||+|++++  .++++.+.+++||++|+||+++|++.|.+..+
T Consensus       174 ~~~~~~PG~~~~~~h~h~~ee~~~vl~G~g~~--~i~~~~~~~~~GD~i~~~~~~ph~~~~~g~~~  237 (253)
T d1rc6a_         174 HILSFAPGASHGYIETHVQEHGAYILSGQGVY--NLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGE  237 (253)
T ss_dssp             EEEEECTTCCBEEEEEESSCEEEEEEESEEEE--ESSSCEEEEETTCEEEECSSEEEEEEEC----
T ss_pred             EEEEECCCceEeEEEeCCceEEEEEeCCEEEE--EECCEEEEecCCCEEEECCCCCEeeeeCCCCC
Confidence            578899999887 6889999999999999999  78999999999999999999999999998533

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.00  E-value=4.2e-10  Score=101.78  Aligned_cols=65  Identities=29%  Similarity=0.396  Sum_probs=59.5

Q ss_pred             EEEEEcCCCcCC-ccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEP-AHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p-~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .++++.||+..+ .|+|..+|++|||+|++++  .++++.+.+++||++|+|++++|+++|.+++.+.
T Consensus       192 ~i~~~~PG~~~~~~h~H~~ee~~~vl~G~~~~--~~~~~~~~v~~GD~i~~~~~~ph~~~n~g~~p~~  257 (273)
T d1sq4a_         192 NIVNFEPGGVIPFAETHVMEHGLYVLEGKAVY--RLNQDWVEVEAGDFMWLRAFCPQACYSGGPGRFR  257 (273)
T ss_dssp             EEEEECSSSEESCCCCCSEEEEEEEEECEEEE--EETTEEEEEETTCEEEEEESCCEEEECCSSSCEE
T ss_pred             EEEEEccCCccccccccccceEEEEEccEEEE--EECCEEEEecCCCEEEECCCCCEEeEeCCCCCEE
Confidence            678899998776 7999999999999999999  7899999999999999999999999999976654

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.97  E-value=7.4e-10  Score=102.03  Aligned_cols=93  Identities=23%  Similarity=0.338  Sum_probs=70.6

Q ss_pred             eeeecCCCCceeecCCceEEEeeeCC----C--eEEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCC
Q 021698          188 CLVKNRELNPVEMIPGGSMKIIRESP----T--SAIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVG  260 (309)
Q Consensus       188 ~l~~~~~~~~~~~~pgg~~~il~~~~----~--~~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pG  260 (309)
                      .+++..+.+.... +|...+++....    .  ...++++||...++|+|. .+|++||++|++++  .++++++.|.+|
T Consensus        12 ~~~~~geg~~~~~-~g~~~~~~~~~~~t~~~~~~~~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~--~~~~~~~~l~~G   88 (330)
T d1y3ta1          12 YLLRSGEGERYLF-GRQVATVMANGRSTGDLFEIVLLSGGKGDAFPLHVHKDTHEGILVLDGKLEL--TLDGERYLLISG   88 (330)
T ss_dssp             EEECTTCSEEEEE-TTEEEEEEECHHHHTSSEEEEEEEECTTCEEEEEECTTCCEEEEEEESCEEE--EETTEEEEECTT
T ss_pred             EEECCCCccEEEe-CCceEEEEEeccCCCCcEEEEEEEECCCCcCCcccCCCceEEEEEeCCEEEE--EECCEEEEEcCC
Confidence            4566666554443 444455442211    1  256789999999999997 46889999999999  679999999999


Q ss_pred             cEEEECCCCcEEEEEcCCeEEEE
Q 021698          261 DYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       261 d~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      |++++|+|++|+++|.++...++
T Consensus        89 d~~~~p~~~~H~~~n~~~~~~~l  111 (330)
T d1y3ta1          89 DYANIPAGTPHSYRMQSHRTRLV  111 (330)
T ss_dssp             CEEEECTTCCEEEEECSTTEEEE
T ss_pred             CEEEeCCCCeEEEEEcCCCeEEE
Confidence            99999999999999998654433

>d1sefa_ b.82.1.11 (A:) Hypothetical protein EF2996 {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein EF2996
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.96  E-value=5.6e-10  Score=99.43  Aligned_cols=69  Identities=14%  Similarity=0.148  Sum_probs=57.9

Q ss_pred             EEEEEcCCCcCC--ccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKAGSVEP--AHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p--~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      .++++.||+...  .|+|..+|++||++|++++  .++++.+.|++||++|+|+|++|+++|.++..+.++|.
T Consensus        51 ~~v~l~pg~~~~~~~~~~~~Ee~~yVl~G~~~~--~~~~~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~v  121 (250)
T d1sefa_          51 YIATFHKNGQQTTGFGGDGIQTLVYVIDGRLRV--SDGQETHELEAGGYAYFTPEMKMYLANAQEADTEVFLY  121 (250)
T ss_dssp             EEEEEEEEEEECSCSSBTTEEEEEEEEESEEEE--ECSSCEEEEETTEEEEECTTSCCEEEESSSSCEEEEEE
T ss_pred             EEEEEcCCcccCCCCCCCCcEEEEEEEeeEEEE--EECCEEEEEcCCCEEEEcCCCcEEEEECCCCCEEEEEE
Confidence            578889988653  3445567788999999999  78999999999999999999999999999877665553

>d1sq4a_ b.82.1.11 (A:) Glyoxylate-induced protein PA1140 {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Glyoxylate-induced protein PA1140
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.90  E-value=1.2e-09  Score=98.68  Aligned_cols=69  Identities=23%  Similarity=0.367  Sum_probs=58.2

Q ss_pred             EEEEEcCCCcC--CccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKAGSVE--PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~--p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      .+++++||+..  |.|.|..++++||++|++++  .++++++.|++||++|+|+|++|+++|.++..+.+.|.
T Consensus        69 y~vev~PGg~s~~p~~~~~~Ee~~yVl~G~~~l--~~~g~~~~L~~Gd~~y~P~g~~h~~~N~g~~~a~~l~i  139 (273)
T d1sq4a_          69 YIVELAPNGGSDKPEQDPNAEAVLFVVEGELSL--TLQGQVHAMQPGGYAFIPPGADYKVRNTTGQHTRFHWI  139 (273)
T ss_dssp             EEEEEEEEEEESSCCCCTTEEEEEEEEESCEEE--EESSCEEEECTTEEEEECTTCCEEEECCSSSCEEEEEE
T ss_pred             EEEEECCCCccCCCCCCCCcEEEEEEEeCEEEE--EECCEEEEecCCCEEEECCCCcEeeeecCCCCEEEEEE
Confidence            67889998764  44444567788999999999  68999999999999999999999999999877766553

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=1.2e-09  Score=99.93  Aligned_cols=68  Identities=24%  Similarity=0.348  Sum_probs=60.4

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      .+..++||...+.|+|..+|++|||+|+++++ .++++.+.+++||++++|+|++|.++|.++..+.++
T Consensus        57 ~~~~l~PG~~~~~H~H~~~e~~~vl~G~g~~t-~~~~~~~~~~~Gd~~~~P~~~~H~~~n~g~e~~~~l  124 (308)
T d2d40a1          57 GLQLIMPGEVAPSHRHNQSALRFIVEGKGAFT-AVDGERTPMNEGDFILTPQWRWHDHGNPGDEPVIWL  124 (308)
T ss_dssp             EEEEECTTCEEEEEEESSCEEEEEEECSSCEE-EETTEEEECCTTCEEEECTTSCEEEECCSSSCEEEE
T ss_pred             eeEEECCCCccccccCchhheEEEEEeeEEEE-EecCEEEEecCCCEEEeCCCceEEeEECCCCCEEEE
Confidence            46789999999999999999999999998764 468899999999999999999999999998765443

>d1y3ta1 b.82.1.5 (A:5-334) Hypothetical protein YxaG {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Hypothetical protein YxaG
species: Bacillus subtilis [TaxId: 1423]

Probab=98.86  E-value=4.9e-09  Score=96.36  Aligned_cols=68  Identities=25%  Similarity=0.382  Sum_probs=59.0

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC-eEEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE-TEFFIKW  285 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d-~~~~i~~  285 (309)
                      ..+++++|...++|+|.. .|++||++|++++  .++++++.+++||++++|+|.+|++.|.++ ..+++++
T Consensus       217 ~~~~~~~G~~~~~H~H~~~~e~~~vl~G~~~~--~v~~~~~~~~~Gd~~~vP~g~~H~~~~~~~~~~~l~~~  286 (330)
T d1y3ta1         217 VSSEGPKGDRIVDHYHEYHTETFYCLEGQMTM--WTDGQEIQLNPGDFLHVPANTVHSYRLDSHYTKMVGVL  286 (330)
T ss_dssp             EEEEECSCCCCCCEECSSCEEEEEEEESCEEE--EETTEEEEECTTCEEEECTTCCEEEEECSSSEEEEEEE
T ss_pred             EEEEECCCCccCccCcCCccEEEEEEecEEEE--EECCEEEEeCCCCEEEECcCCcEEeEeCCCCeEEEEEE
Confidence            567889999999999985 6788999999999  679999999999999999999999999874 4444443

>d1rc6a_ b.82.1.11 (A:) Hypothetical protein YlbA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein YlbA
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=2.2e-09  Score=95.49  Aligned_cols=68  Identities=19%  Similarity=0.295  Sum_probs=57.3

Q ss_pred             EEEEEcCCCcCC--ccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEE
Q 021698          216 AIVRFKAGSVEP--AHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       216 ~~v~l~pG~~~p--~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~  285 (309)
                      .+++++||+...  .|.|..++++||++|++++  .++++++.|.+||++|+|+|+.|++.|.+++.+.+.|
T Consensus        54 ~~v~l~pG~~~~~~~h~~~~Ee~~~Vl~G~~~~--~~~~~~~~l~~Gd~~~~p~~~~H~~~N~~~~~~~~l~  123 (253)
T d1rc6a_          54 YLVTLHQNGGNQQGFGGEGIETFLYVISGNITA--KAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFL  123 (253)
T ss_dssp             EEEEEEEEEEESSCSCCTTEEEEEEEEESEEEE--EETTEEEEEETTEEEEECTTCCCEEEECSSSCEEEEE
T ss_pred             EEEEECCCcccCCcccCCCcEEEEEEEECEEEE--EECCEEEEECCCCEEEECCCCCEEEEECCCCCEEEEE
Confidence            567899987654  4444566788999999999  6899999999999999999999999999987666554

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.83  E-value=1.1e-08  Score=94.88  Aligned_cols=105  Identities=14%  Similarity=0.201  Sum_probs=70.4

Q ss_pred             eeecCCCCceeecCCceEEEeeeCC----C--eEEEEEcCCCc--CCccccCc-cEEEEEEeCEEEEEEEe---CCeEEE
Q 021698          189 LVKNRELNPVEMIPGGSMKIIRESP----T--SAIVRFKAGSV--EPAHHHTF-GHDLVVLEGKKSVWNLT---KGERFD  256 (309)
Q Consensus       189 l~~~~~~~~~~~~pgg~~~il~~~~----~--~~~v~l~pG~~--~p~H~H~~-~e~vyVl~G~l~v~~~~---~~~~~~  256 (309)
                      +++..+.+......+..++++...+    .  ...+.++||..  .++|+|.. .|.+||++|++++++..   +++...
T Consensus        16 vi~~~~~~~~~~~g~~~~~~~~~~~~t~g~~~~~~~~~~~g~~~g~~~H~H~~~~E~~~vl~G~~~~~~~~~~~~~~~~~   95 (348)
T d1juha_          16 VIRHYSHARAVTVDTQLYRFYVTGPSSGYAFTLMGTNAPHSDALGVLPHIHQKHYENFYCNKGSFQLWAQSGNETQQTRV   95 (348)
T ss_dssp             EECTTCCTTCEEETTEEEEEEECHHHHTTSCEEEEEEECCCSSCSSCCEECSSCEEEEEEEESEEEEEEEETTSCCEEEE
T ss_pred             EecCCCCceEEecCCCEEEEEeccccCCCeEEEEEEeeCCCCCCCCCccccccceEEEEEEeeEEEEEEeccCCceEEEE
Confidence            4555555443333333455443221    1  25677889875  46799975 58889999999996322   237899


Q ss_pred             ecCCcEEEECCCCcEEEEEcCC-eEEE-EEEcCCccccc
Q 021698          257 LTVGDYLFTPAGDVHRVKYYEE-TEFF-IKWDGRWDMFF  293 (309)
Q Consensus       257 L~pGd~i~iP~g~~H~~~n~~d-~~~~-i~~~g~~~i~~  293 (309)
                      |.+||++++|+|++|+++|.++ +.++ +..++.++-|+
T Consensus        96 l~~GD~~~~P~g~~H~~~n~~~~~~~l~v~~pg~~e~~f  134 (348)
T d1juha_          96 LSSGDYGSVPRNVTHTFQIQDPDTEMTGVIVPGGFEDLF  134 (348)
T ss_dssp             EETTCEEEECTTEEEEEEECSTTEEEEEEEESSCTTHHH
T ss_pred             eCCCCEEEECCCCeEeeEeCCCCcEEEEEECCCcHHHHH
Confidence            9999999999999999999985 3343 44556655444

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.83  E-value=8.4e-09  Score=96.91  Aligned_cols=90  Identities=20%  Similarity=0.284  Sum_probs=69.7

Q ss_pred             CCceeecCCceEEEeeeCC--C-----eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCC---eEEEecCCcEE
Q 021698          195 LNPVEMIPGGSMKIIRESP--T-----SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKG---ERFDLTVGDYL  263 (309)
Q Consensus       195 ~~~~~~~pgg~~~il~~~~--~-----~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~---~~~~L~pGd~i  263 (309)
                      .+++ ..+||.++++....  .     ..+++++||+..++|||+. .|+.||++|++++++...+   .++.+++||++
T Consensus       226 q~P~-~~~gG~~~~~d~~~fp~~~~is~~~~~l~PG~~~~~H~Hp~a~E~~yvl~G~g~v~v~~~~g~~~t~~l~~GDv~  304 (372)
T d1j58a_         226 QEPI-ESEGGKVYIADSTNFKVSKTIASALVTVEPGAMRELHWHPNTHEWQYYISGKARMTVFASDGHARTFNYQAGDVG  304 (372)
T ss_dssp             SCCE-ECSSEEEEEESTTTSTTCCSCEEEEEEECTTCEEEEEECSSSCEEEEEEESEEEEEEEEETTEEEEEEEESSCEE
T ss_pred             cCCc-ccCCccEEEeccccCCccCceeEEEEEECCCcccCCCCCCCCcEEEEEEECeEEEEEEcCCCceEEEEecCCcEE
Confidence            3444 35688887765332  1     2678999999999999975 7889999999998533222   46889999999


Q ss_pred             EECCCCcEEEEEcCCeEEEEEE
Q 021698          264 FTPAGDVHRVKYYEETEFFIKW  285 (309)
Q Consensus       264 ~iP~g~~H~~~n~~d~~~~i~~  285 (309)
                      |||+|..|.+.|.+++.+.+++
T Consensus       305 ~iP~g~~H~i~N~g~e~l~~l~  326 (372)
T d1j58a_         305 YVPFAMGHYVENIGDEPLVFLE  326 (372)
T ss_dssp             EECTTCBEEEEECSSSCEEEEE
T ss_pred             EECCCCeEEEEECCCCCEEEEE
Confidence            9999999999999987765544

>d2et1a1 b.82.1.2 (A:1-201) Germin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Germin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.80  E-value=7.5e-09  Score=89.44  Aligned_cols=67  Identities=24%  Similarity=0.269  Sum_probs=55.7

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEe----CCe--EEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLT----KGE--RFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~----~~~--~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      ..+.+.||+..++|||+. .|++||++|++++++..    +++  ...|++||.+++|.|.+|...|.+++..+
T Consensus        75 ~rv~l~pgg~~~PH~Hp~A~Ei~yV~~G~~~v~~v~~~~~~~~~~~~~l~~GDv~vvP~G~~H~~~N~g~~~a~  148 (201)
T d2et1a1          75 NRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAY  148 (201)
T ss_dssp             EEEEECTTCEEEEEECTTCCEEEEEEESCEEEEEECCGGGTTCEEEEEECTTCEEEECTTCCEEEEECSSSCEE
T ss_pred             EEEEECCCCCcCCcccCCCCEEEEEEcceEEEEEEeccCCCceeEEEEecCCCEEEECCCCeEEEEEcCCCCEE
Confidence            578899999999999975 58899999999986321    122  46899999999999999999999977543

>d1sfna_ b.82.1.11 (A:) Hypothetical protein DR1152 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: YlbA-like
domain: Hypothetical protein DR1152
species: Deinococcus radiodurans [TaxId: 1299]

Probab=98.76  E-value=9.2e-09  Score=91.20  Aligned_cols=65  Identities=23%  Similarity=0.332  Sum_probs=57.6

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      .++++.||+..  |.|..++++||++|++++  .++++.+.|.+||++|+|+|+.|++.|.++..+.++
T Consensus        53 ~~v~~~pGg~~--~~~~~E~~~~Vl~G~~~~--~~~g~~~~l~~G~~~~~P~g~~h~~~n~~~~~~~~~  117 (245)
T d1sfna_          53 FTAEMPAGAQA--TESVYQRFAFVLSGEVDV--AVGGETRTLREYDYVYLPAGEKHMLTAKTDARVSVF  117 (245)
T ss_dssp             EEEEECTTCEE--ECCSSEEEEEEEEEEEEE--ECSSCEEEECTTEEEEECTTCCCEEEEEEEEEEEEE
T ss_pred             EEEEECCCCCC--CCCCccEEEEEEECEEEE--EECCEEEEecCCCEEEeCCCCcEEEEeCCCccEEEE
Confidence            47889999764  667888999999999999  689999999999999999999999999998877644

>d1x82a_ b.82.1.7 (A:) Glucose-6-phosphate isomerase, GPI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Glucose-6-phosphate isomerase, GPI
domain: Glucose-6-phosphate isomerase, GPI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.72  E-value=2.4e-08  Score=85.33  Aligned_cols=70  Identities=21%  Similarity=0.282  Sum_probs=53.1

Q ss_pred             EEEEEcCCCcCC------ccccC---ccEEEEEEeCEEEEEEEe---CCeEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          216 AIVRFKAGSVEP------AHHHT---FGHDLVVLEGKKSVWNLT---KGERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       216 ~~v~l~pG~~~p------~H~H~---~~e~vyVl~G~l~v~~~~---~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      .+..++||....      .|+|+   ..|++|||+|+..+++..   +.+...+.|||+++||+|..|++.|.+++++.+
T Consensus        70 ~~~~i~PG~~~~e~~~t~gH~H~h~~~~E~~~vl~G~g~~~l~~~~~~~~~~~v~~Gd~v~iP~g~~H~~~N~Gde~L~~  149 (190)
T d1x82a_          70 ATTVLYPGKVGKEFFFTKGHFHAKLDRAEVYVALKGKGGMLLQTPEGDAKWISMEPGTVVYVPPYWAHRTVNIGDEPFIF  149 (190)
T ss_dssp             EEEEECCCEETTEECBCCCBBCSSTTCCEEEEEEESCEEEEEECTTCCEEEEEECTTCEEEECTTCEEEEEECSSSCEEE
T ss_pred             EEEEECCCcccCccccccceECCCCCCeEEEEEEEeEEEEEEeeccCceEEEEecCCcEEEEecceeEEeEECCCCCEEE
Confidence            357788986432      47774   468899999999984322   224578999999999999999999999877654


Q ss_pred             EE
Q 021698          284 KW  285 (309)
Q Consensus       284 ~~  285 (309)
                      ++
T Consensus       150 l~  151 (190)
T d1x82a_         150 LA  151 (190)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Oxalate decarboxylase OxdC (YvrK)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.71  E-value=2.3e-08  Score=93.86  Aligned_cols=87  Identities=29%  Similarity=0.460  Sum_probs=66.4

Q ss_pred             ecCCceEEEee--eCCC-----eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe-CCeE--EEecCCcEEEECCCC
Q 021698          200 MIPGGSMKIIR--ESPT-----SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT-KGER--FDLTVGDYLFTPAGD  269 (309)
Q Consensus       200 ~~pgg~~~il~--~~~~-----~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~-~~~~--~~L~pGd~i~iP~g~  269 (309)
                      +..||..+...  ..|.     ...+++.||+..++|||+..|+.||++|++++++.. +++.  ..|++||++++|+|.
T Consensus        52 ~~~gg~~r~~~~~~lp~~~~~a~~~~~L~pga~~~pH~H~~ae~~yVl~G~~~vt~Vd~~G~~~~~~l~~GDv~~~P~G~  131 (372)
T d1j58a_          52 LEKGGYAREVTVRELPISENLASVNMRLKPGAIRELHWHKEAEWAYMIYGSARVTIVDEKGRSFIDDVGEGDLWYFPSGL  131 (372)
T ss_dssp             EETTEEEEEECTTTCTTCSSCEEEEEEECTTCEEEEEEESSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTC
T ss_pred             ccCCCeeEEeehhhChhhhhhhheEEEECCCcCcCCcccCcccEEEEEeCEEEEEEEeCCCcEEEEEeccCCEEEECCCC
Confidence            45667666432  2222     256899999999999999999999999999997432 2333  469999999999999


Q ss_pred             cEEEEEcCC-eEEEEEEc
Q 021698          270 VHRVKYYEE-TEFFIKWD  286 (309)
Q Consensus       270 ~H~~~n~~d-~~~~i~~~  286 (309)
                      +|.+.|.++ ++++++.+
T Consensus       132 ~H~i~n~~dg~e~l~vf~  149 (372)
T d1j58a_         132 PHSIQALEEGAEFLLVFD  149 (372)
T ss_dssp             CEEEEEEEEEEEEEEEES
T ss_pred             EEEEEeCCCCcEEEEEEC
Confidence            999999864 56666655

>d1fxza2 b.82.1.2 (A:297-470) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=98.67  E-value=1.1e-07  Score=80.07  Aligned_cols=82  Identities=13%  Similarity=0.158  Sum_probs=61.9

Q ss_pred             eeecCCceEEEeeeCC---------CeEEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEe-CC-eE--EEecCCcEE
Q 021698          198 VEMIPGGSMKIIRESP---------TSAIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLT-KG-ER--FDLTVGDYL  263 (309)
Q Consensus       198 ~~~~pgg~~~il~~~~---------~~~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~-~~-~~--~~L~pGd~i  263 (309)
                      +-...||.+..+....         ....+.++||+..++|||+ ..|++||++|++++++.. ++ +.  +.|++||.+
T Consensus        18 ~~~~~gG~i~~~~~~~fP~L~~~~~s~~~~~l~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~g~~~~~~~l~~Gdv~   97 (174)
T d1fxza2          18 IYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGRALIQVVNCNGERVFDGELQEGRVL   97 (174)
T ss_dssp             EEETTTEEEEEECTTTSGGGTTTTCCEEEEEECTTCEEEEEEETTCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             cCcCCCeEEEEecHHHhhhhhhcCceEEEeeecCCCEeCCccCCCCCEEEEEEecceEEEEecCCCceeEEEEEcCCcEE
Confidence            3344567766554322         1367889999999999996 468899999999997432 22 33  459999999


Q ss_pred             EECCCCcEEEEEcCCe
Q 021698          264 FTPAGDVHRVKYYEET  279 (309)
Q Consensus       264 ~iP~g~~H~~~n~~d~  279 (309)
                      ++|+|.+|...|.++.
T Consensus        98 vvP~G~~h~~~n~~~~  113 (174)
T d1fxza2          98 IVPQNFVVAARSQSDN  113 (174)
T ss_dssp             EECTTCEEEEEECSTT
T ss_pred             EECCCCEEEEEeCCCC
Confidence            9999999999997754

>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin beta subunit [TaxId: 3847]

Probab=98.67  E-value=2.2e-08  Score=84.13  Aligned_cols=64  Identities=20%  Similarity=0.253  Sum_probs=54.7

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC--CeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK--GERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~--~~~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      ..++++||+...+|+|...+++||++|++++++...  ..++.+++||.++||+|.+|++.|.++.
T Consensus        47 ~~~~i~p~~~~~Ph~~~a~ei~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~vP~G~~h~~~n~~~~  112 (170)
T d1uija1          47 VQFQSKPNTILLPHHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDH  112 (170)
T ss_dssp             EEEEECTTEEEEEEEESEEEEEEEEESCEEEEEECSSCEEEEEECTTEEEEECTTCEEEEEECCSS
T ss_pred             EEEEecCCcccccccCCCCEEEEEEEEEEEEEEEeCCCcEEEEecCCcEEEECCCCeEEEEEcCCC
Confidence            567899999999997778889999999999864333  3668999999999999999999999854

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.65  E-value=4e-08  Score=91.45  Aligned_cols=66  Identities=21%  Similarity=0.278  Sum_probs=60.0

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~  282 (309)
                      .+..+.||...+.|+|...++.||++|+..++ .++++...+.+||++++|+|.+|...|.++..++
T Consensus        90 ~~~~l~PGe~~~~H~H~~~~~~~vi~G~g~~t-~v~g~~~~~~~GD~~~~P~~~~H~~~n~~d~~~~  155 (351)
T d2phda1          90 GIQYLGPRETAPEHRHSQNAFRFVVEGEGVWT-VVNGDPVRMSRGDLLLTPGWCFHGHMNDTDQPMA  155 (351)
T ss_dssp             EEEEECTTCEEEEEEESSCEEEEEEECEEEEE-EETTEEEEEETTCEEEECTTCCEEEEECSSSCEE
T ss_pred             heEEECCCCcCCccccccceeEEEEECCcEEE-EECCEEEEEeCCCEEEeCCCceEEEEEcCCCCEE
Confidence            57889999999999999999999999998764 5799999999999999999999999999876544

>d2d40a1 b.82.1.23 (A:35-342) Gentisate 1,2-dioxygenase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=5.9e-08  Score=88.37  Aligned_cols=69  Identities=17%  Similarity=0.186  Sum_probs=62.2

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      ....++||...+.|+|...+++||++|++++  .++++++.++|||++++|++..|+..|.++..++.+.+
T Consensus       225 ~~~~l~pG~~~~~h~h~~~~~~~v~~G~g~~--~v~~~~~~~~~GD~~~vP~~~~h~~~~~~d~~l~~v~D  293 (308)
T d2d40a1         225 FLQLLPKGFASRVARTTDSTIYHVVEGSGQV--IIGNETFSFSAKDIFVVPTWHGVSFQTTQDSVLFSFSD  293 (308)
T ss_dssp             EEEEECTTCBCCCBEESSCEEEEEEEEEEEE--EETTEEEEEETTCEEEECTTCCEEEEEEEEEEEEEEES
T ss_pred             EEEEccCCCccCCccCChheEEEEEeCcEEE--EECCEEEEEeCCCEEEeCCCCeEEEEcCCCeEEEEEcC
Confidence            5678999999999999999999999999999  68999999999999999999999999988877765544

>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Jack bean (Canavalia ensiformis), canavalin/vinculin [TaxId: 3823]

Probab=98.60  E-value=9.4e-08  Score=80.72  Aligned_cols=64  Identities=19%  Similarity=0.195  Sum_probs=53.9

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      ..++++||+...+||+...+++||++|+.++++...+  .++.|++||.++||+|.+|++.|.++.
T Consensus        44 ~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~v~~v~~~~~~~~~l~~GDv~~iP~G~~h~~~N~~~~  109 (178)
T d1dgwa_          44 LEYCSKPNTLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNN  109 (178)
T ss_dssp             EEEEECTTEEEEEEEESSEEEEEEEESEEEEEEEETTEEEEEEEETTEEEEECTTCCEEEEECCSS
T ss_pred             EEEEecCCcccccccCCCCEEEEEEEeEEEEEEecCCceEEEEecCCCEEEECCCCeEEEEECCCC
Confidence            4678999999999966678889999999999644433  568899999999999999999998753

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.59  E-value=7.8e-08  Score=89.63  Aligned_cols=62  Identities=26%  Similarity=0.308  Sum_probs=58.2

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      ....++||....+|+|...+++||++|++++  .++++++.+++||.+++|++..|+..|.+++
T Consensus       259 ~~~~l~pG~~~~~hrH~~~~v~~v~~G~g~~--~i~g~~~~~~~GDv~~vP~~~~h~~~N~s~~  320 (355)
T d3bu7a1         259 SMQMLRPGEHTKAHRHTGNVIYNVAKGQGYS--IVGGKRFDWSEHDIFCVPAWTWHEHCNTQER  320 (355)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEECCEEE--EETTEEEEECTTCEEEECTTCCEEEEECCSS
T ss_pred             EEEEECCCCccCCcCccCcEEEEEEECcEEE--EECCEEEEeeCCCEEEeCCCCcEEeecCCCC
Confidence            5678999999999999999999999999999  7899999999999999999999999999864

>d1od5a2 b.82.1.2 (A:321-493) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=98.58  E-value=8.7e-08  Score=80.64  Aligned_cols=82  Identities=17%  Similarity=0.132  Sum_probs=61.4

Q ss_pred             eeecCCceEEEeeeC--CC-------eEEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCC--eE--EEecCCcEE
Q 021698          198 VEMIPGGSMKIIRES--PT-------SAIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKG--ER--FDLTVGDYL  263 (309)
Q Consensus       198 ~~~~pgg~~~il~~~--~~-------~~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~--~~--~~L~pGd~i  263 (309)
                      +....||.+..+...  |.       ...+.+.||+...+|||+. .+++||++|++++++...+  +.  ..|++||.+
T Consensus        23 ~~n~~gG~i~~~~~~~fP~L~~lgls~~~v~L~pga~~~PH~H~~A~ei~yV~~G~~~v~~v~~~~~~~~~~~l~~Gdv~  102 (173)
T d1od5a2          23 FYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGKGRVRVVNCQGNAVFDGELRRGQLL  102 (173)
T ss_dssp             EEETTTEEEEEESTTTCTTHHHHTCEEEEEEECTTCEEEEEEESSCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTCEE
T ss_pred             ccCCCCeEEEEecHHHhhhhhhccceEEEEEEcCCcEecCccCCCCcEEEEEEecceEEEEEeCCCceEEeEEecCCcEE
Confidence            333456777655332  21       2678999999999999975 5889999999999743332  23  459999999


Q ss_pred             EECCCCcEEEEEcCCe
Q 021698          264 FTPAGDVHRVKYYEET  279 (309)
Q Consensus       264 ~iP~g~~H~~~n~~d~  279 (309)
                      +||+|.+|...|.++.
T Consensus       103 ~iP~G~~h~~~n~~~~  118 (173)
T d1od5a2         103 VVPQNFVVAEQGGEQG  118 (173)
T ss_dssp             EECTTCEEEEEEEEEE
T ss_pred             EECCCCEEEEEcCCCc
Confidence            9999999999886644

>d2phla2 b.82.1.2 (A:220-381) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.55  E-value=1.3e-07  Score=78.68  Aligned_cols=69  Identities=22%  Similarity=0.183  Sum_probs=56.7

Q ss_pred             EEEEEcCCCcCCccccCcc-EEEEEEeCEEEEEEEeCC-e---------EEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFG-HDLVVLEGKKSVWNLTKG-E---------RFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~-e~vyVl~G~l~v~~~~~~-~---------~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ..++++||+...+|||+.. +++||++|++++++...+ +         ...|++||.++||+|.+|...|.++.+++.+
T Consensus        23 ~~~~l~p~~~~~PH~h~~A~~i~~V~~G~g~v~~v~~~g~~~~~~~~~~~~~l~~Gdv~vvP~G~~~~~~n~~~~~~v~~  102 (162)
T d2phla2          23 SSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGPKGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNFTGF  102 (162)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEEESEEEEEEEEECC--CCSCEEEEEEEEETTCEEEECTTCCEEEEESSSEEEEEE
T ss_pred             EEEEECCCcEeCCccCCCCCEEEEEEEeeeEEEEEecCCccccccceeeEeeecCCcEEEECCCCEEEEEeCCCceEEEE
Confidence            5789999999999999864 778999999999743221 1         3579999999999999999999988776544

>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.54  E-value=7.6e-08  Score=83.08  Aligned_cols=64  Identities=22%  Similarity=0.273  Sum_probs=54.9

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC--eEEEecCCcEEEECCCCcEEEEEcCCe
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG--ERFDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~--~~~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      .+++++||+...+|++...+++||++|+..+++...+  .++.|++||.++||+|.+|++.|.++.
T Consensus        43 ~~~~i~p~~l~~Ph~~~a~ev~yV~~G~g~~~~v~~~~~~~~~l~~GDv~~iP~G~~~~~~N~~~~  108 (203)
T d1uika1          43 LEFNSKPNTLLLPHHADADYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDND  108 (203)
T ss_dssp             EEEEECSSEEEEEEEESEEEEEEEEESEEEEEEECSSCEEEEEEETTEEEEECTTCEEEEEECCSS
T ss_pred             EEEEecCCCccccccCCCcEEEEEEEEEEEEEEEeCCCeEEEEecCCCEEEECCCCeEEEEECCCC
Confidence            5688999999988988888899999999998644333  568999999999999999999998864

>d2phda1 b.82.1.23 (A:17-367) Gentisate 1,2-dioxygenase {Pseudaminobacter salicylatoxidans [TaxId: 93369]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Pseudaminobacter salicylatoxidans [TaxId: 93369]

Probab=98.48  E-value=3.2e-07  Score=85.20  Aligned_cols=69  Identities=22%  Similarity=0.296  Sum_probs=61.5

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      ....++||.....|+|...+++||++|+.++  .++++++.+++||.+++|++..|+..|.++..++.+.+
T Consensus       266 ~~~~l~pG~~~~~hrh~~~~v~~vi~G~g~~--~i~~~~~~~~~gDvf~vP~~~~h~~~n~~~~~Lf~~~D  334 (351)
T d2phda1         266 EFHRLRAGTETATRNEVGSTVFQVFEGAGAV--VMNGETTKLEKGDMFVVPSWVPWSLQAETQFDLFRFSD  334 (351)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEESCEEE--EETTEEEEECTTCEEEECTTCCEEEEESSCEEEEEEES
T ss_pred             EEEEecCCCcCCCccccCcEEEEEEeCcEEE--EECCEEEEEcCCCEEEeCCCCcEEEecCCCeEEEEECC
Confidence            4567899999999999999999999999999  78999999999999999999999999988776654443

>d1uika2 b.82.1.2 (A:351-535) Seed storage 7S protein {Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), beta-conglycinin alpha prime subunit [TaxId: 3847]

Probab=98.47  E-value=3.3e-07  Score=77.66  Aligned_cols=69  Identities=23%  Similarity=0.257  Sum_probs=56.4

Q ss_pred             EEEEEcCCCcCCccccCc-cEEEEEEeCEEEEEEEeCC-----------------eEEEecCCcEEEECCCCcEEEEEcC
Q 021698          216 AIVRFKAGSVEPAHHHTF-GHDLVVLEGKKSVWNLTKG-----------------ERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~-~e~vyVl~G~l~v~~~~~~-----------------~~~~L~pGd~i~iP~g~~H~~~n~~  277 (309)
                      ..+++.||+...+|||+. .+++||++|++.+++...+                 ..+.|++||.++||+|.+|+..|.+
T Consensus        45 ~~~~l~p~~~~~Ph~h~~A~~i~~V~~G~g~v~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~GDv~viP~G~~~~~~n~~  124 (185)
T d1uika2          45 SVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVGIKEQQQRQQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATS  124 (185)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEEESCEEEEEEEC------------CBCCEEEEEEECTTCEEEECTTCCEEEEESS
T ss_pred             heeecCCCceeeeeecCCCCEEEEEEeeEEEEEEEccCccchhhccccccCcceeEEEEecCCcEEEECCCCEEEEEcCC
Confidence            568899999999999975 4788999999988643322                 2568999999999999999999998


Q ss_pred             CeEEEEE
Q 021698          278 ETEFFIK  284 (309)
Q Consensus       278 d~~~~i~  284 (309)
                      +..++..
T Consensus       125 d~~~v~~  131 (185)
T d1uika2         125 DLNFFAF  131 (185)
T ss_dssp             SEEEEEE
T ss_pred             CccEEEE
Confidence            8766443

>d3bu7a1 b.82.1.23 (A:19-373) Gentisate 1,2-dioxygenase {Silicibacter pomeroyi [TaxId: 89184]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Gentisate 1,2-dioxygenase-like
domain: Gentisate 1,2-dioxygenase
species: Silicibacter pomeroyi [TaxId: 89184]

Probab=98.46  E-value=2e-07  Score=86.84  Aligned_cols=66  Identities=29%  Similarity=0.455  Sum_probs=58.4

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC-CeEEE
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE-ETEFF  282 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~  282 (309)
                      .+..+.||...+.|+|...++.||++|+..++ .++++...+.+||++++|+|++|...|.+ +++++
T Consensus        88 ~~q~l~PGe~~~~HrH~~~~~~~vi~G~g~~t-~v~ge~~~~~~GD~~~~P~~~~H~h~n~~~~~~~~  154 (355)
T d3bu7a1          88 GIQTMKAGERAGAHRHAASALRFIMEGSGAYT-IVDGHKVELGANDFVLTPNGTWHEHGILESGTECI  154 (355)
T ss_dssp             EEEEECTTCBCCCEEESSCEEEEEEECSCEEE-EETTEEEEECTTCEEEECTTCCEEEEECTTCCCEE
T ss_pred             heEeeCCCCcCcccccccceeEEEEECCcEEE-EECCEEEEeeCCCEEEeCCCceEeeecCCCCCcEE
Confidence            46789999999999999999999999997654 57999999999999999999999999975 55543

>d1juha_ b.82.1.5 (A:) Quercetin 2,3-dioxygenase {Aspergillus japonicus [TaxId: 34381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Quercetin 2,3-dioxygenase-like
domain: Quercetin 2,3-dioxygenase
species: Aspergillus japonicus [TaxId: 34381]

Probab=98.42  E-value=3.1e-07  Score=84.90  Aligned_cols=68  Identities=16%  Similarity=0.099  Sum_probs=53.8

Q ss_pred             EEEEEcCCCcCCcccc-CccEEEEEEeCEEEEEEEe-CCeEEEecCCcEEEECCCCcEEEEEcCCe-EEEEEE
Q 021698          216 AIVRFKAGSVEPAHHH-TFGHDLVVLEGKKSVWNLT-KGERFDLTVGDYLFTPAGDVHRVKYYEET-EFFIKW  285 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H-~~~e~vyVl~G~l~v~~~~-~~~~~~L~pGd~i~iP~g~~H~~~n~~d~-~~~i~~  285 (309)
                      ..+++.+|+....||| ...+++||++|++++  .+ ++++..|.+||+++||+|++|+++|.++. .++++.
T Consensus       252 ~~~~~~pg~~~~~~~~~~~~e~~~vleG~~~~--~i~~~~~~~l~~GD~~~vP~g~~h~~~~~~~~~~~~~~~  322 (348)
T d1juha_         252 ISMSTTPSTVTVPTWSFPGACAFQVQEGRVVV--QIGDYAATELGSGDVAFIPGGVEFKYYSEAYFSKVLFVS  322 (348)
T ss_dssp             EEECCCCTTSCCCCBCCSSCEEEEEEESCEEE--EETTSCCEEECTTCEEEECTTCCEEEEESSSSEEEEEEE
T ss_pred             EEEEecCCCCCCCcccCCCCEEEEEEeceEEE--EeCCcceEEecCCCEEEECCCCcEEEEeCCCCcEEEEEE
Confidence            3566778888766665 467888999999999  56 45678999999999999999999999854 444444

>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: French bean (Phaseolus vulgaris), phaseolin [TaxId: 3885]

Probab=98.16  E-value=2.4e-06  Score=73.15  Aligned_cols=63  Identities=17%  Similarity=0.155  Sum_probs=52.3

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeE--E------EecCCcEEEECCCCcEEEEEcCC
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER--F------DLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~--~------~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      ..+++.|++..-+||+...+++||++|+..+++...+..  +      .+++||.++||+|.+|++.|.++
T Consensus        45 ~~~~i~P~~l~lP~~~nA~~i~yV~~G~G~v~~v~p~~~~~~~~~~~~~l~~GDv~~iPaG~~~~~~n~~~  115 (200)
T d2phla1          45 VEFRSKPETLLLPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDP  115 (200)
T ss_dssp             EEEEECSSEEEEEEEESEEEEEEEEESEEEEEEEETTTEEEEEEEESSCTTSCSEEEECTTCEEEEEECCS
T ss_pred             EEEEecCCceeeeecCCCCEEEEEEeeeEEEEEEECCCCceeehhhccCccCCCEEEECCCCeEEEEECCC
Confidence            567899999998887777888999999999974444432  1      48999999999999999999874

>d2arca_ b.82.4.1 (A:) Regulatory protein AraC {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Regulatory protein AraC
family: Regulatory protein AraC
domain: Regulatory protein AraC
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=7.7e-06  Score=66.32  Aligned_cols=49  Identities=20%  Similarity=0.229  Sum_probs=44.0

Q ss_pred             CccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcC
Q 021698          227 PAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYE  277 (309)
Q Consensus       227 p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~  277 (309)
                      .+|.|+.-+++||++|+..+  .++++++.++|||.+++|||++|.+....
T Consensus        32 Rp~g~~~Y~l~yv~~G~G~~--~i~~~~y~l~~Gdl~li~P~~~H~y~~~~   80 (161)
T d2arca_          32 RPLGMKGYILNLTIRGQGVV--KNQGREFVCRPGDILLFPPGEIHHYGRHP   80 (161)
T ss_dssp             ETTCCSSEEEEEEEEECEEE--EETTEEEEECTTCEEEECTTCCEEEEECT
T ss_pred             CCCCCCCEEEEEEEEeEEEE--EECCEEEEecCCeEEEEcCCCcEEEEeCC
Confidence            35888999999999999999  78999999999999999999999975543

>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.00  E-value=1.1e-06  Score=74.05  Aligned_cols=54  Identities=19%  Similarity=0.068  Sum_probs=44.1

Q ss_pred             CCccccCccEEEEEEeCEEEEEEEeCCeE--EEecCCcEEEECCCCcEEEEEcCCe
Q 021698          226 EPAHHHTFGHDLVVLEGKKSVWNLTKGER--FDLTVGDYLFTPAGDVHRVKYYEET  279 (309)
Q Consensus       226 ~p~H~H~~~e~vyVl~G~l~v~~~~~~~~--~~L~pGd~i~iP~g~~H~~~n~~d~  279 (309)
                      ...|.|+.+|..||++|+..+.+..+++.  ..+++||.+.||+|++|++....+.
T Consensus        93 ~~EH~H~~dEvr~vv~G~g~f~v~~~d~~~~v~~~~GDli~vPag~~H~F~~~~~~  148 (179)
T d1zrra1          93 LNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQVLCEKNDLISVPAHTPHWFDMGSEP  148 (179)
T ss_dssp             HSCBEESSCEEEEEEESCCCCCEECSSCEEEEECCCSCEEEECTTCCBCCCCSSCS
T ss_pred             cccccCCCceEEEEEeCeEEEEEEcCCeEEEEEEcCCCEEEeCCCCeEccccCCCC
Confidence            35799999999999999998743445553  5789999999999999999766543

>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Acireductone dioxygenase
domain: Acireductone dioxygenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.79  E-value=2.5e-05  Score=65.44  Aligned_cols=52  Identities=25%  Similarity=0.256  Sum_probs=43.1

Q ss_pred             CccccCccEEEEEEeCEEEEEEEe-CCeE--EEecCCcEEEECCCCcEEEEEcCC
Q 021698          227 PAHHHTFGHDLVVLEGKKSVWNLT-KGER--FDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       227 p~H~H~~~e~vyVl~G~l~v~~~~-~~~~--~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      ..|.|+.+|..||++|++.+.+.. +++.  ..+.+||.+++|+|+.|++....+
T Consensus        86 ~EH~H~~~Evr~vl~G~G~f~v~~~~~~~iri~~~~GDli~iPag~~HwFtl~~~  140 (179)
T d1vr3a1          86 EEHLHLDEEIRYILEGSGYFDVRDKEDKWIRISMEKGDMITLPAGIYHRFTLDEK  140 (179)
T ss_dssp             SCEECSSCEEEEEEEEEEEEEEECTTSCEEEEEEETTEEEEECTTCCEEEEECTT
T ss_pred             hceeCCCcEEEEEEeCcEEEEEECCCCcEEEEEEeCCCEEEeCCCccEeccCCCC
Confidence            579999999999999999996432 2343  467899999999999999987765

>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), glycinin A3B4 [TaxId: 3847]

Probab=97.78  E-value=3.8e-05  Score=67.49  Aligned_cols=83  Identities=13%  Similarity=0.165  Sum_probs=63.7

Q ss_pred             CCceEEEeeeCCC--------eEEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCC---------------------
Q 021698          202 PGGSMKIIRESPT--------SAIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKG---------------------  252 (309)
Q Consensus       202 pgg~~~il~~~~~--------~~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~---------------------  252 (309)
                      .+|.+.+..+...        ....++.|++..-+|......++||++|+..+.+...+                     
T Consensus        20 E~G~~E~wd~~~~qlqcagV~~~r~~I~p~gL~lP~ys~a~~i~yV~qG~G~~giv~Pgc~et~~~~~~~~~~~~~~~~~   99 (245)
T d1od5a1          20 EGGLIETWNSQHPELQCAGVTVSKRTLNRNGLHLPSYSPYPQMIIVVQGKGAIGFAFPGCPETFEKPQQQSSRRGSRSQQ   99 (245)
T ss_dssp             TTEEEEECCTTSHHHHHHTCEEEEEEECTTEEEEEEECSSCEEEEEEECEEEEEECCTTCCCCEEECC------------
T ss_pred             cCCeEEeCCCCCHHHhhcCceeEEEEEcCCccccccccCCCeEEEEEeCEEEEEEEeCCChhhhcchhhccccccccccc
Confidence            4565666543321        25678899999888878889999999999999744321                     


Q ss_pred             -------eEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          253 -------ERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       253 -------~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                             +...|+.||.+.||+|++|++.|.++.+++++
T Consensus       100 ~~~d~~qk~~rl~~GDVi~iPAG~~~w~yNdgn~~Lv~v  138 (245)
T d1od5a1         100 QLQDSHQKIRHFNEGDVLVIPPGVPYWTYNTGDEPVVAI  138 (245)
T ss_dssp             ---EEESCEEEEETTEEEEECTTCCEEEEECSSSCEEEE
T ss_pred             ccccceeeeecccCCCEEEECCCceEEEEeCCCCcEEEE
Confidence                   22469999999999999999999999887654

>d1fxza1 b.82.1.2 (A:10-248) Seed storage 7S protein {Soybean (Glycine max), proglycinin [TaxId: 3847]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Germin/Seed storage 7S protein
domain: Seed storage 7S protein
species: Soybean (Glycine max), proglycinin [TaxId: 3847]

Probab=97.77  E-value=3.5e-05  Score=67.45  Aligned_cols=70  Identities=11%  Similarity=0.147  Sum_probs=58.1

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-------------------------CeEEEecCCcEEEECCCCc
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-------------------------GERFDLTVGDYLFTPAGDV  270 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-------------------------~~~~~L~pGd~i~iP~g~~  270 (309)
                      ...++.|++..-+|......++||++|+..+.+...                         .+.+.|++||.+.||+|++
T Consensus        42 ~r~~I~p~gL~lP~y~~a~~i~yV~qG~G~~g~v~pgc~et~~~~~~~~~~~~~~~~~d~~qk~~~lr~GDVi~iPAG~~  121 (239)
T d1fxza1          42 SRCTLNRNALRRPSYTNGPQEIYIQQGKGIFGMIYPGCPSTFEEPQQPQQRGQSSRPQDRHQKIYNFREGDLIAVPTGVA  121 (239)
T ss_dssp             EEEEECTTEEEEEEEESSCEEEEEEECCEEEEEECTTCCCC------------------CCCCEEEECTTEEEEECTTCE
T ss_pred             heeeeccCceecceecCCCeEEEEEeCEEEEEEecCCChhhhcccccccccccccccchhhhhhhccccCCEEEecCCce
Confidence            567889999987777888899999999999864322                         2346999999999999999


Q ss_pred             EEEEEcCCeEEEEEE
Q 021698          271 HRVKYYEETEFFIKW  285 (309)
Q Consensus       271 H~~~n~~d~~~~i~~  285 (309)
                      |++.|.++.+++++.
T Consensus       122 ~w~~N~gn~~Lv~v~  136 (239)
T d1fxza1         122 WWMYNNEDTPVVAVS  136 (239)
T ss_dssp             EEEEECSSSCEEEEE
T ss_pred             EEEEeCCCCcEEEEE
Confidence            999999988876655

>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA
species: Aneurinibacillus thermoaerophilus [TaxId: 143495]

Probab=97.58  E-value=0.00011  Score=58.40  Aligned_cols=71  Identities=17%  Similarity=0.165  Sum_probs=51.5

Q ss_pred             EcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCe--EEEe-cCCcEEEECCCCcEEEEEcC-CeEEEEEEcCCcc
Q 021698          220 FKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGE--RFDL-TVGDYLFTPAGDVHRVKYYE-ETEFFIKWDGRWD  290 (309)
Q Consensus       220 l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~--~~~L-~pGd~i~iP~g~~H~~~n~~-d~~~~i~~~g~~~  290 (309)
                      ..+|....+|.|. ..++++|++|++.+.+....+  .+.+ +++..++||||+.|.+.+.+ ++.+++..+..++
T Consensus        39 ~~~g~iRG~H~Hk~~~q~~~vi~G~i~~~~~d~~~~~~~~l~~~~~~l~IPpg~~h~~~~l~~~s~ll~l~~~~y~  114 (135)
T d2pa7a1          39 TKGEEPRGFHAHKKLEQVLVCLNGSCRVILDDGNIIQEITLDSPAVGLYVGPAVWHEMHDFSSDCVMMVLASDYYD  114 (135)
T ss_dssp             CCSSCCEEEEEESSCCEEEEEEESCEEEEEECSSCEEEEEECCTTEEEEECTTCEEEEECCCTTCEEEEEESSCCC
T ss_pred             CCCCcEEeeeccccccEEEEecccEEEEEEEeccccceeecccCCceeeeCCCEeeeEEecCCCcEEEEEcCCCCC
Confidence            4567778899996 467889999999985332222  2333 67889999999999999987 4555555555443

>d1yfua1 b.82.1.20 (A:1-174) 3-hydroxyanthranilate-3,4-dioxygenase {Ralstonia metallidurans [TaxId: 119219]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Ralstonia metallidurans [TaxId: 119219]

Probab=97.51  E-value=0.00034  Score=57.76  Aligned_cols=64  Identities=17%  Similarity=0.178  Sum_probs=51.5

Q ss_pred             EcCCCcCCccccCccEEEEEEeCEEEEEEEeCCe--EEEecCCcEEEECCCCcEEEEEc-CCeEEEE
Q 021698          220 FKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGE--RFDLTVGDYLFTPAGDVHRVKYY-EETEFFI  283 (309)
Q Consensus       220 l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~--~~~L~pGd~i~iP~g~~H~~~n~-~d~~~~i  283 (309)
                      --|+.....|..+.+|++|-++|.+.+.+..+++  ...+++||.+++|++++|+..-. .++.-+|
T Consensus        42 GGPN~R~DyH~~~~eE~FyQlkG~m~Lkv~e~g~~~di~I~EGe~fLLP~~vpHSPqR~~~~tiGLV  108 (174)
T d1yfua1          42 GGPNHRTDYHDDPLEEFFYQLRGNAYLNLWVDGRRERADLKEGDIFLLPPHVRHSPQRPEAGSACLV  108 (174)
T ss_dssp             CSCBCCCCEEECSSCEEEEEEESCEEEEEEETTEEEEEEECTTCEEEECTTCCEEEEBCCTTCEEEE
T ss_pred             cCCcccCccccCcchhheeeeccceEEEEEeCCceEEEEcCCCcEEEeCCCCCCCcccCCCCceeEE
Confidence            3466777899999999999999999997544553  47899999999999999999775 3565443

>d1zvfa1 b.82.1.20 (A:1-175) 3-hydroxyanthranilate-3,4-dioxygenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: 3-hydroxyanthranilic acid dioxygenase-like
domain: 3-hydroxyanthranilate-3,4-dioxygenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=0.00073  Score=55.74  Aligned_cols=64  Identities=11%  Similarity=0.036  Sum_probs=51.7

Q ss_pred             EcCCCcCCccccCccEEEEEEeCEEEEEEEeC----Ce--EEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          220 FKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK----GE--RFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       220 l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~----~~--~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      --|+.....|.-+.+|++|-++|.+.+.+..+    ++  ...+++||.+++|++++|+.+-..++.-+|
T Consensus        40 GGPN~R~DyH~~~~eE~FYQlkGdm~Lkv~~~~~~~gk~~di~I~EGe~fLLP~~vPHSPqR~~~tiGLV  109 (175)
T d1zvfa1          40 GGPNERTDYHINPTPEWFYQKKGSMLLKVVDETDAEPKFIDIIINEGDSYLLPGNVPHSPVRFADTVGIV  109 (175)
T ss_dssp             CSSBCCSCEEECSSCEEEEEEESCEEEEEEECSSSSCEEEEEEECTTEEEEECTTCCEEEEECTTCEEEE
T ss_pred             cCCCcccccccCcchhheeeecCcEEEEEEecCCCCCceeEEeecCCCEEEeCCCCCCCCCCCCCceEEE
Confidence            35667788999999999999999999864333    22  677999999999999999987777766554

>d1o5ua_ b.82.1.8 (A:) Hypothetical protein TM1112 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Hypothetical protein TM1112
domain: Hypothetical protein TM1112
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00085  Score=49.52  Aligned_cols=57  Identities=23%  Similarity=0.216  Sum_probs=43.5

Q ss_pred             EEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCC
Q 021698          219 RFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEE  278 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d  278 (309)
                      ...||. .+++ .+..|+++||+|++++. ..+++.+.+.|||.+++|+|..=.+...+.
T Consensus        24 ~~~pg~-f~~~-y~~~E~~~ileG~v~i~-~~~G~~~~~~aGD~~~~p~G~~~~W~v~e~   80 (88)
T d1o5ua_          24 EKEVSE-FDWY-YDTNETCYILEGKVEVT-TEDGKKYVIEKGDLVTFPKGLRCRWKVLEP   80 (88)
T ss_dssp             EECSEE-EEEE-CSSCEEEEEEEEEEEEE-ETTCCEEEEETTCEEEECTTCEEEEEEEEE
T ss_pred             eecCcE-EEEE-cCccEEEEEEEeEEEEE-cCCCCEEEEeCCCEEEECCCCEEEEEECce
Confidence            345543 2344 46779999999999995 347788999999999999998877666554

>d1vrba1 b.82.2.11 (A:8-326) Putative asparaginyl hydroxylase YxbC {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Asparaginyl hydroxylase-like
domain: Putative asparaginyl hydroxylase YxbC
species: Bacillus subtilis [TaxId: 1423]

Probab=97.08  E-value=0.0014  Score=57.54  Aligned_cols=63  Identities=25%  Similarity=0.277  Sum_probs=48.7

Q ss_pred             EEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-------------------------------------CeEEEecCCc
Q 021698          219 RFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-------------------------------------GERFDLTVGD  261 (309)
Q Consensus       219 ~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-------------------------------------~~~~~L~pGd  261 (309)
                      .-++|+..++|+....-++..++|+-++.+.-.                                     ....+|+|||
T Consensus       128 ~~~~g~~~~~H~D~~d~f~~Qv~G~K~W~L~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD  207 (319)
T d1vrba1         128 AAKNGGGFKAHFDAYTNLIFQIQGEKTWKLAKNENVSNPMQHYDLSEAPYYPDDLQSYWKGDPPKEDLPDAEIVNLTPGT  207 (319)
T ss_dssp             EECSSCCCCSEECSSEEEEEEEESCEEEEEECCSSCSSCSSCEECC----CCHHHHHHCCSCCCCTTCCSSEEEEECTTC
T ss_pred             ecCCCCCCccccCCCceeEEeecceEEEEEeCCccccccccCcccccCccccccccccchhhchhhhcCccEEEEECCCC
Confidence            344566778999888888889999888753211                                     1346899999


Q ss_pred             EEEECCCCcEEEEEcCCeEE
Q 021698          262 YLFTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       262 ~i~iP~g~~H~~~n~~d~~~  281 (309)
                      .+|||+|..|.+++.+++.-
T Consensus       208 vLYiP~gw~H~v~s~~~sis  227 (319)
T d1vrba1         208 MLYLPRGLWHSTKSDQATLA  227 (319)
T ss_dssp             EEEECTTCEEEEECSSCEEE
T ss_pred             EEEeCCCceEEeEecCCeEE
Confidence            99999999999999876543

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=96.78  E-value=0.0024  Score=54.68  Aligned_cols=69  Identities=22%  Similarity=0.199  Sum_probs=55.1

Q ss_pred             EEEcCCCcCCccccCccEEE-EEEeCEEEEEEEeCCeEEEecCCcEEEECCC--CcEEEEEcC-C--eEEEEEEcC
Q 021698          218 VRFKAGSVEPAHHHTFGHDL-VVLEGKKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYE-E--TEFFIKWDG  287 (309)
Q Consensus       218 v~l~pG~~~p~H~H~~~e~v-yVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g--~~H~~~n~~-d--~~~~i~~~g  287 (309)
                      -++.||...++|.|+..|.+ ||++|+++-+ ..-+....+++||.-|+-+|  +.|+-.|.. +  ..++-+|..
T Consensus        46 d~~~pg~gf~~HpH~g~eivT~vl~G~~~H~-DS~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~~lQiWi~  120 (231)
T d1tq5a1          46 DVIEAGQGFGTHPHKDMEILTYVLEGTVEHQ-DSMGNKEQVPAGEFQIMSAGTGIRHSEYNPSSTERLHLYQIWIM  120 (231)
T ss_dssp             EEECTTCEEEEEEECSCEEEEEEEESEEEEE-ESSSCEEEEETTCEEEEECTTCEEEEEECCCSSCCEEEEEEEEC
T ss_pred             ceecCCCCCCCCCcCCeeEEEEEEeEEEEEC-CCCCCcEEECCCcEEEEecCCcEEEEeeccccCCCeEEEEEEeC
Confidence            47899999999999998876 9999999985 44567789999999999876  789988764 3  345556643

>d2gm6a1 b.82.1.19 (A:11-202) Cysteine dioxygenase type I {Ralstonia eutropha [TaxId: 106590]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Ralstonia eutropha [TaxId: 106590]

Probab=96.58  E-value=0.0097  Score=49.62  Aligned_cols=62  Identities=26%  Similarity=0.307  Sum_probs=48.8

Q ss_pred             EEEEEcCCCcCCccccCccEEEEEEeCEEEEEEEe--C-------CeEEEecCCcEEEECC--CCcEEEEEcC
Q 021698          216 AIVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLT--K-------GERFDLTVGDYLFTPA--GDVHRVKYYE  277 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~--~-------~~~~~L~pGd~i~iP~--g~~H~~~n~~  277 (309)
                      ..+...||...|.|-|.....+.|++|+++.+++.  +       .+...+.+|+..++.+  |..|++.|.+
T Consensus        71 ~~i~W~pG~~tpiHdH~~w~~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~l~~G~v~~~~~~~~~IH~v~N~~  143 (192)
T d2gm6a1          71 VSFVWGPGQRTPIHDHTVWGLIGMLRGAEYSQPFVLDGSGRPVLHGEPTRLEPGHVEAVSPTVGDIHRVHNAY  143 (192)
T ss_dssp             EEEEECTTCBCCSBCCSSCEEEEEEESCEEEEEEEECTTSCEEECSCCEEECTTCEEEEBTTTBCCEEEEESC
T ss_pred             EEEecCCCCCCCCCCCCCceEEEEEcCeEEEEEeeeCCCCCcccccceEEecCCCEEEECCCCCceeEEecCC
Confidence            46778999999999998878788999988875332  1       1456799999888854  5799999974

>d3elna1 b.82.1.19 (A:5-190) Cysteine dioxygenase type I {Rattus norvegicus [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Cysteine dioxygenase type I
domain: Cysteine dioxygenase type I
species: Rattus norvegicus [TaxId: 10116]

Probab=96.16  E-value=0.012  Score=48.79  Aligned_cols=63  Identities=21%  Similarity=0.225  Sum_probs=49.7

Q ss_pred             EEEEEcCCCcCCccccCcc-EEEEEEeCEEEEEEEe---CC-------eEEEecCCcEEEECCC-CcEEEEEcCC
Q 021698          216 AIVRFKAGSVEPAHHHTFG-HDLVVLEGKKSVWNLT---KG-------ERFDLTVGDYLFTPAG-DVHRVKYYEE  278 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~~~-e~vyVl~G~l~v~~~~---~~-------~~~~L~pGd~i~iP~g-~~H~~~n~~d  278 (309)
                      .++..+||...|.|-|+.. -++.|++|+++.+++.   ++       ....+.+|+..++.+. -.|++.|.++
T Consensus        69 ~li~W~pGq~tpiHDH~~~~~~~~vl~G~l~e~~Y~~~~~~~~~l~~~~~~~~~~g~v~~~~~~~~iH~v~N~~~  143 (186)
T d3elna1          69 MILCWGEGHGSSIHDHTDSHCFLKLLQGNLKETLFDWPDKKSNEMIKKSERTLRENQCAYINDSIGLHRVENVSH  143 (186)
T ss_dssp             EEEEECTTCBCCEECCTTCEEEEEEEESCEEEEEECCCCSSCCCCCEEEEEEECTTCEEEECTTTCEEEEECCCS
T ss_pred             EEEEccCCCcCCCccCCCCcEEEEEcccceEEEEeecCCCCcccccccceEEecCCCEEEeCCCCCcceeecCCC
Confidence            4678899999999999865 5567999999875331   11       3578899999998776 5999999874

>d1wlta1 b.82.1.1 (A:1-176) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.24  E-value=0.055  Score=44.24  Aligned_cols=67  Identities=18%  Similarity=0.199  Sum_probs=47.0

Q ss_pred             EcCCCcCCcccc----CccEEEEEEeCEEEEEEEeCC--------e--EEEec--CCcEEEECCCCcEEEEEcCCeEEE-
Q 021698          220 FKAGSVEPAHHH----TFGHDLVVLEGKKSVWNLTKG--------E--RFDLT--VGDYLFTPAGDVHRVKYYEETEFF-  282 (309)
Q Consensus       220 l~pG~~~p~H~H----~~~e~vyVl~G~l~v~~~~~~--------~--~~~L~--pGd~i~iP~g~~H~~~n~~d~~~~-  282 (309)
                      -.+|....+|.|    .+..+++|++|++...+ ++-        +  ...|.  .+..++||+|..|.+.+.++...+ 
T Consensus        52 s~kgvlRG~H~q~~~~~q~Klv~ci~G~I~dvv-vDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~ahGf~~l~d~~~i~  130 (176)
T d1wlta1          52 SRKGVVRGLHYQRTPKEQGKIIFVPKGRILDVA-VDVRKSSPTFGKYVKAELNEENHYMLWIPPGFAHGFQALEDSIVIY  130 (176)
T ss_dssp             ECTTBEEEEEEECTTSCCEEEEEEEESEEEEEE-EECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEESSSEEEEE
T ss_pred             echheeeecccccccCCccEEEEEeccceEEEE-EeeccCCCccceeeeEEeeccccceEEEccceeeEEeeccccceEE
Confidence            367777789977    34568999999999742 221        1  34554  455999999999999999875444 


Q ss_pred             EEEcC
Q 021698          283 IKWDG  287 (309)
Q Consensus       283 i~~~g  287 (309)
                      ...++
T Consensus       131 Y~~~~  135 (176)
T d1wlta1         131 FITHN  135 (176)
T ss_dssp             EEESS
T ss_pred             EecCC
Confidence            34433

>d3dl3a1 b.82.2.13 (A:5-100) Tellurite resistance protein B, TehB {Vibrio fischeri [TaxId: 668]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Tellurite resistance protein B, TehB
species: Vibrio fischeri [TaxId: 668]

Probab=95.12  E-value=0.058  Score=39.92  Aligned_cols=55  Identities=20%  Similarity=0.430  Sum_probs=41.7

Q ss_pred             ccc--CccEE--EEEEeCEEEEEEEeC------CeEEEecCCcEEEECCCCcEEEEEcCCeEEEE
Q 021698          229 HHH--TFGHD--LVVLEGKKSVWNLTK------GERFDLTVGDYLFTPAGDVHRVKYYEETEFFI  283 (309)
Q Consensus       229 H~H--~~~e~--vyVl~G~l~v~~~~~------~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i  283 (309)
                      +.|  ..+.+  +-|++|++.+....+      ++...+.+|+.-++||..+|++...+|..+.|
T Consensus        26 ~~HnTK~Gvwg~i~Vl~G~L~y~~~~d~~~~e~~~~~~~~~g~~~~~~Pq~wH~Ve~sdD~~f~v   90 (96)
T d3dl3a1          26 THHNTAVDVFGQICVMEGVVTYYGFANSEATEPEIKVVINAGQFATSPPQYWHRIELSDDAQFNI   90 (96)
T ss_dssp             SSBCCCTTEEEEEEEEESEEEEEEESSTTCCSCSEEEEEETTEEEEECTTCEEEEEECTTCEEEE
T ss_pred             hhcCCCCceEEEEEEEEEEEEEEEeccCCCCcccEEEEecCCCcceeCCCccEEEEeCCCeEEEE
Confidence            445  34455  569999999842222      26789999999999999999999766888764

>d3bb6a1 b.82.2.13 (A:1-109) Uncharacterized protein YeaR {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: TehB-like
domain: Uncharacterized protein YeaR
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.057  Score=40.86  Aligned_cols=54  Identities=20%  Similarity=0.382  Sum_probs=41.4

Q ss_pred             EEEEeCEEEEEEEeC------CeEEEecCCcEEEECCCCcEEEEEcC-CeEEEEEEcCCcccccchh
Q 021698          237 LVVLEGKKSVWNLTK------GERFDLTVGDYLFTPAGDVHRVKYYE-ETEFFIKWDGRWDMFFDED  296 (309)
Q Consensus       237 vyVl~G~l~v~~~~~------~~~~~L~pGd~i~iP~g~~H~~~n~~-d~~~~i~~~g~~~i~~~~~  296 (309)
                      +-|++|++++....+      ++...+.+|+.-++||..+|++...+ |..+.|      ++|..++
T Consensus        43 l~Vl~G~L~y~~~~d~~~~~~e~~~~~~ag~~~~~~Pq~wH~Ve~lsdD~~f~v------~Fy~~pe  103 (109)
T d3bb6a1          43 LSVMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNI------DFFVAPE  103 (109)
T ss_dssp             EEEEESEEEEEEESSTTCSSCSEEEEEEBTBEEECCSSCEEEEEESSTTCEEEE------EEEECHH
T ss_pred             EEEEEEEEEEEEeccCCCCCcceEEEecCCCceeeCCCccEEeEECCCCEEEEE------EEEECCc
Confidence            569999999842222      35688999999999999999999887 577763      4555554

>d1dzra_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Salmonella typhimurium [TaxId: 90371]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.92  E-value=0.086  Score=43.32  Aligned_cols=68  Identities=21%  Similarity=0.228  Sum_probs=49.1

Q ss_pred             EEcCCCcCCccccC----ccEEEEEEeCEEEEEEEeC--------C--eEEEecCC--cEEEECCCCcEEEEEcCC-eEE
Q 021698          219 RFKAGSVEPAHHHT----FGHDLVVLEGKKSVWNLTK--------G--ERFDLTVG--DYLFTPAGDVHRVKYYEE-TEF  281 (309)
Q Consensus       219 ~l~pG~~~p~H~H~----~~e~vyVl~G~l~v~~~~~--------~--~~~~L~pG--d~i~iP~g~~H~~~n~~d-~~~  281 (309)
                      .-.+|....+|.|.    +..+++|++|++... .++        +  ....|.+.  ..+|||+|..|.+.+.++ +.+
T Consensus        53 ~s~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dv-vvDlR~~S~t~g~~~~~~L~~~~~~~l~IP~G~aHGf~~l~~~~~i  131 (183)
T d1dzra_          53 KSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDV-AVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEF  131 (183)
T ss_dssp             EEETTBEEEEEEECGGGCCCEEEEEEESEEEEE-EEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEE
T ss_pred             eeccceeEEEEecccccchhhheeeccccEEEE-EEeccCCCCCCCcEEEEeecCCCceEEEEcCCeEEEEEEecCcceE
Confidence            34678777899763    467899999999974 222        1  23566654  599999999999999987 445


Q ss_pred             EEEEcC
Q 021698          282 FIKWDG  287 (309)
Q Consensus       282 ~i~~~g  287 (309)
                      .+..+.
T Consensus       132 ~Y~~~~  137 (183)
T d1dzra_         132 LYKATN  137 (183)
T ss_dssp             EEEESS
T ss_pred             EEeCCc
Confidence            555544

>d2ixca1 b.82.1.1 (A:1-198) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.92  E-value=0.088  Score=43.85  Aligned_cols=68  Identities=10%  Similarity=0.063  Sum_probs=49.0

Q ss_pred             EEcCCCcCCcccc----CccEEEEEEeCEEEEEEEeCC----------eEEEecCC--cEEEECCCCcEEEEEcCC-eEE
Q 021698          219 RFKAGSVEPAHHH----TFGHDLVVLEGKKSVWNLTKG----------ERFDLTVG--DYLFTPAGDVHRVKYYEE-TEF  281 (309)
Q Consensus       219 ~l~pG~~~p~H~H----~~~e~vyVl~G~l~v~~~~~~----------~~~~L~pG--d~i~iP~g~~H~~~n~~d-~~~  281 (309)
                      .-.+|....+|.|    ++..+++|++|++...+ ++-          ....|.+.  ..++||+|..|.+.+.++ +.+
T Consensus        52 ~S~kgvlRGlH~q~~~~~q~Klv~~i~G~I~dvv-vDlR~~S~Tfgk~~~~~L~~~~~~~i~IP~G~aHGf~~L~~~~~i  130 (198)
T d2ixca1          52 VSSAGVLRGLHFAQLPPSQAKYVTCVSGSVFDVV-VDIREGSPTFGRWDSVLLDDQDRRTIYVSEGLAHGFLALQDNSTV  130 (198)
T ss_dssp             EECTTBEEEEEEECTTTCCCEEEEEEESEEEEEE-ECCCBTCTTTTCEEEEEEETTTCCEEEECTTCEEEEEECSSSEEE
T ss_pred             eeehhhheeeeeecccchhhhhhhhhhceEEEEE-EecccccccCCcEEEEEeecCCcceEEEcCCcEEEEEeecCccee
Confidence            3367777789976    36678999999999742 221          23566654  599999999999999986 455


Q ss_pred             EEEEcC
Q 021698          282 FIKWDG  287 (309)
Q Consensus       282 ~i~~~g  287 (309)
                      .+..++
T Consensus       131 ~Y~~s~  136 (198)
T d2ixca1         131 MYLCSA  136 (198)
T ss_dssp             EEEESS
T ss_pred             ecccCC
Confidence            555454

>d1h2ka_ b.82.2.6 (A:) Hypoxia-inducible factor HIF ihhibitor (FIH1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Hypoxia-inducible factor HIF ihhibitor (FIH1)
domain: Hypoxia-inducible factor HIF ihhibitor (FIH1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.029  Score=49.84  Aligned_cols=58  Identities=22%  Similarity=0.251  Sum_probs=43.6

Q ss_pred             cCCCcCCccccCccEEEEEEeCEEEEEEEe--------------------------------------CCeEEEecCCcE
Q 021698          221 KAGSVEPAHHHTFGHDLVVLEGKKSVWNLT--------------------------------------KGERFDLTVGDY  262 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~--------------------------------------~~~~~~L~pGd~  262 (309)
                      .+|+..+.|.-...-++.+++|+-++.+.-                                      ..-..+|.|||.
T Consensus       177 ~~gs~t~~H~D~~~~~~~q~~G~K~~~l~~p~~~~~~~~~~~~~~~~~~s~~d~~~~d~~~~p~~~~~~~~~~~l~pGd~  256 (335)
T d1h2ka_         177 MEGNVTPAHYDEQQNFFAQIKGYKRCILFPPDQFECLYPYPVHHPCDRQSQVDFDNPDYERFPNFQNVVGYETVVGPGDV  256 (335)
T ss_dssp             CTTCEEEEECCSEEEEEEEEESCEEEEEECGGGHHHHCBCCTTSTTTTBBCCCTTSCCTTTCGGGGGCCEEEEEECTTCE
T ss_pred             CCCCCCccccccccceEEEeccceEEEEeccccccccccccccCCCCcceeccccCcchhhccchhcCCceEEEECCCCE
Confidence            456667788766666778899988875320                                      012368999999


Q ss_pred             EEECCCCcEEEEEcCC
Q 021698          263 LFTPAGDVHRVKYYEE  278 (309)
Q Consensus       263 i~iP~g~~H~~~n~~d  278 (309)
                      +|||+|-.|.++|.++
T Consensus       257 L~iP~~w~H~V~~~~~  272 (335)
T d1h2ka_         257 LYIPMYWWHHIESLLN  272 (335)
T ss_dssp             EEECTTCEEEEEECTT
T ss_pred             EeeCCCCeEEEEEcCC
Confidence            9999999999999864

>d2c0za1 b.82.1.1 (A:1-190) Novobiocin biosynthesis protein NovW {Streptomyces caeruleus [TaxId: 195949]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: Novobiocin biosynthesis protein NovW
species: Streptomyces caeruleus [TaxId: 195949]

Probab=94.66  E-value=0.1  Score=43.11  Aligned_cols=68  Identities=12%  Similarity=-0.008  Sum_probs=48.4

Q ss_pred             EcCCCcCCcccc----CccEEEEEEeCEEEEEEEeCC--------e--EEEe--cCCcEEEECCCCcEEEEEcCC-eEEE
Q 021698          220 FKAGSVEPAHHH----TFGHDLVVLEGKKSVWNLTKG--------E--RFDL--TVGDYLFTPAGDVHRVKYYEE-TEFF  282 (309)
Q Consensus       220 l~pG~~~p~H~H----~~~e~vyVl~G~l~v~~~~~~--------~--~~~L--~pGd~i~iP~g~~H~~~n~~d-~~~~  282 (309)
                      -.+|....+|.|    .+..+++|++|++...+ ++-        +  ...|  +.+..++||+|..|.+...++ +.+.
T Consensus        53 s~kgvlRGlH~q~~~~~q~Klv~~i~G~i~dv~-vDlR~~S~t~gk~~~~~l~~~~~~~l~IP~G~aHGf~~L~~~t~i~  131 (190)
T d2c0za1          53 SVRGVVRGIHFVDVPPGQAKYVTCVRGAVFDVV-VDLRVGSPTYGCWEGTRLDDVSRRAVYLSEGIGHGFCAISDEATLC  131 (190)
T ss_dssp             EETTBEEEEEEECTTTCCCEEEEEEESEEEEEE-EECCBTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEE
T ss_pred             hhhhheeeeeecccccchhheeeeeeeeEEEEE-EeeccccceeEEEeeeccccccceeEEecCCcEEEEeecCchheeE
Confidence            357777789954    45688999999999742 221        1  2334  577899999999999999875 5555


Q ss_pred             EEEcCC
Q 021698          283 IKWDGR  288 (309)
Q Consensus       283 i~~~g~  288 (309)
                      +..++.
T Consensus       132 Y~~s~~  137 (190)
T d2c0za1         132 YLSSGT  137 (190)
T ss_dssp             EEESSC
T ss_pred             EecCCc
Confidence            555543

>d1j1la_ b.82.1.12 (A:) Pirin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Pirin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.44  E-value=0.048  Score=47.64  Aligned_cols=69  Identities=20%  Similarity=0.133  Sum_probs=53.5

Q ss_pred             EEEcCCCcCCccccCccEEE-EEEeC-EEEEEEEeCCeEEEecCCcEEEECCC--CcEEEEEcCCe--EEEEEEcC
Q 021698          218 VRFKAGSVEPAHHHTFGHDL-VVLEG-KKSVWNLTKGERFDLTVGDYLFTPAG--DVHRVKYYEET--EFFIKWDG  287 (309)
Q Consensus       218 v~l~pG~~~p~H~H~~~e~v-yVl~G-~l~v~~~~~~~~~~L~pGd~i~iP~g--~~H~~~n~~d~--~~~i~~~g  287 (309)
                      +...++...++|.|+..|.+ ||++| .++-+ ..-+...++++||.-|+-+|  +.|+=.+.++.  .++-+|..
T Consensus        43 ~~~~~~~gf~~HPH~g~e~vTy~~~G~~~~H~-Ds~G~~~~i~~G~vq~mtAG~Gi~HsE~~~~~~~~~~lQiWin  117 (288)
T d1j1la_          43 FKGGRPGGFPDHPHRGFETVSYLLEGGSMAHE-DFCGHTGKMNPGDLQWMTAGRGILHAEMPCSEEPAHGLQLWVN  117 (288)
T ss_dssp             EEECTTCBEEEEEEBSEEEEEEECSSSCEEEE-ETTSCEEEECTTCEEEEECTTCEEEEEEECSSSCEEEEEEEEE
T ss_pred             CcCCCCCCCCCCCcCCeEEEEEEEeCCeEEEe-cCCCCeeEecCCCEEEEecccceEecccccccccceeeEEEec
Confidence            56777777899999998876 89998 57764 44578899999999999876  78998887754  44555643

>d1nxma_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Streptococcus suis [TaxId: 1307]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Streptococcus suis [TaxId: 1307]

Probab=94.42  E-value=0.064  Score=44.58  Aligned_cols=68  Identities=12%  Similarity=0.186  Sum_probs=50.9

Q ss_pred             cCCCcCCccccCccEEEEEE-eCEEEEEEEeCC---------eEEEecCCcEEEECCCCcEEEEEcCC-eEEEEEEcCCc
Q 021698          221 KAGSVEPAHHHTFGHDLVVL-EGKKSVWNLTKG---------ERFDLTVGDYLFTPAGDVHRVKYYEE-TEFFIKWDGRW  289 (309)
Q Consensus       221 ~pG~~~p~H~H~~~e~vyVl-~G~l~v~~~~~~---------~~~~L~pGd~i~iP~g~~H~~~n~~d-~~~~i~~~g~~  289 (309)
                      .+|....+|.|+....++++ .|.+... .++-         ....|..+..+|||+|..|.+...++ +.+.+..+..+
T Consensus        65 ~kgvlRGlH~q~~~k~v~~~~~G~i~~V-~vD~R~S~t~g~~~~~~l~~~~~i~IP~G~aHGf~tL~d~t~i~Y~~s~~y  143 (194)
T d1nxma_          65 RKNVLRGLHAEPWDKYISVADGGKVLGT-WVDLREGETFGNTYQTVIDASKSIFVPRGVANGFQVLSDFVAYSYLVNDYW  143 (194)
T ss_dssp             ETTBEEEEEECSSCEEEEECSSCCEEEE-EEECBSSTTTTCEEEEEECTTEEEEECTTEEEEEEECSSEEEEEEEESSCC
T ss_pred             eeeEEEEEEeccchhhhhhccccceeEE-EEEeccccccceeeeeeeccCceEEEecceeeEEEeeccceeEEEecCccc
Confidence            56777899999988888776 5887763 3322         24678999999999999999999986 45555555433

>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Homogentisate dioxygenase
domain: Homogentisate dioxygenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.054  Score=50.30  Aligned_cols=54  Identities=15%  Similarity=0.077  Sum_probs=45.5

Q ss_pred             cCccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEEEc
Q 021698          231 HTFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIKWD  286 (309)
Q Consensus       231 H~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~  286 (309)
                      ...++++||-+|++.+  .++=....+++||+++||.|+.+++.-.++...+++-.
T Consensus       149 ADGDeLi~~~~Gsg~l--~TefG~L~v~pGDyvVIPRG~~frv~~~~~~r~yiiE~  202 (439)
T d1eyba_         149 SDGDFLIVPQKGNLLI--YTEFGKMLVQPNEICVIQRGMRFSIDVFEETRGYILEV  202 (439)
T ss_dssp             SSEEEEEEEEESCEEE--EETTEEEEECTTEEEEECTTCCEEEECSSSEEEEEEEE
T ss_pred             CCCCEEEEEEeCcEEE--EEeeeEEEecCCcEEEecCceEEEEecCCCceEEEEee
Confidence            3556788999999999  67888899999999999999999998777777666543

>d1ep0a_ b.82.1.1 (A:) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.24  E-value=0.075  Score=43.67  Aligned_cols=67  Identities=18%  Similarity=0.160  Sum_probs=47.6

Q ss_pred             cCCCcCCcccc---CccEEEEEEeCEEEEEEEeC--------C--eEEEecC--CcEEEECCCCcEEEEEcCC-eEEEEE
Q 021698          221 KAGSVEPAHHH---TFGHDLVVLEGKKSVWNLTK--------G--ERFDLTV--GDYLFTPAGDVHRVKYYEE-TEFFIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H---~~~e~vyVl~G~l~v~~~~~--------~--~~~~L~p--Gd~i~iP~g~~H~~~n~~d-~~~~i~  284 (309)
                      .+|....+|.|   ++..+++|++|++... .++        +  ....|.+  +..+|||+|..|.+.+.++ +.+.+.
T Consensus        54 ~~~vlRG~H~q~~~~q~Klv~~~~G~I~dv-~vD~R~~S~tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~~~i~Y~  132 (183)
T d1ep0a_          54 VRGVLRGLHFQREKPQGKLVRVIRGEIFDV-AVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYK  132 (183)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEE-EEECCTTCTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             ccCceEEeeecCCCcHHhhhcccccEEEEE-EEeccCCCCcCCeeeEEEecCCCcceeEecCCceeeeeeccCceEEEEe
Confidence            56777788866   3567899999999874 232        1  2246655  4589999999999999886 445555


Q ss_pred             EcCC
Q 021698          285 WDGR  288 (309)
Q Consensus       285 ~~g~  288 (309)
                      .++.
T Consensus       133 ~s~~  136 (183)
T d1ep0a_         133 CTEL  136 (183)
T ss_dssp             ESSC
T ss_pred             ccCC
Confidence            5553

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.44  E-value=0.21  Score=44.03  Aligned_cols=50  Identities=16%  Similarity=0.083  Sum_probs=37.7

Q ss_pred             CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          232 TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       232 ~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ..-.+++|++|++++  ..++++..|++|++++||++..... -.++..+++.
T Consensus       264 ~~~~il~vi~G~~~i--~~~~~~~~l~~G~~~~ipa~~~~~~-i~G~~~ll~a  313 (315)
T d1qwra_         264 ESFLICSVIEGSGLL--KYEDKTCPLKKGDHFILPAQMPDFT-IKGTCTLIVS  313 (315)
T ss_dssp             SSCEEEEEEEEEEEE--EETTEEEEEETTCEEEECTTCCCEE-EEEEEEEEEE
T ss_pred             CCcEEEEEEeCeEEE--EECCEEEEEecCcEEEEECCCCCEE-EEeeEEEEEE
Confidence            345778999999999  6788999999999999999875422 1345555443

>d2ixha1 b.82.1.1 (A:1-184) dTDP-4-dehydrorhamnose 3,5-epimerase RmlC {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-dehydrorhamnose 3,5-epimerase RmlC
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.30  E-value=0.26  Score=40.32  Aligned_cols=66  Identities=21%  Similarity=0.211  Sum_probs=46.8

Q ss_pred             cCCCcCCcccc---CccEEEEEEeCEEEEEEEeC--------C--eEEEecC--CcEEEECCCCcEEEEEcCC-eEEEEE
Q 021698          221 KAGSVEPAHHH---TFGHDLVVLEGKKSVWNLTK--------G--ERFDLTV--GDYLFTPAGDVHRVKYYEE-TEFFIK  284 (309)
Q Consensus       221 ~pG~~~p~H~H---~~~e~vyVl~G~l~v~~~~~--------~--~~~~L~p--Gd~i~iP~g~~H~~~n~~d-~~~~i~  284 (309)
                      .+|....+|.|   ++..+++|++|++... .++        +  ....|.+  +..+|||+|..|.+...++ +.+.+.
T Consensus        57 ~kgvlRG~H~q~~~~q~Klv~~i~G~I~dv-vvDlR~~S~Tfgk~~~~~L~~~~~~~l~IP~G~aHGf~~L~~~~~v~Y~  135 (184)
T d2ixha1          57 ARGVLRGLHYQIRQAQGKLVRATLGEVFDV-AVDLRRGSPTFGQWVGERLSAENKRQMWIPAGFAHGFVVLSEYAEFLYK  135 (184)
T ss_dssp             ETTBEEEEEEESSSCCCEEEEEEESEEEEE-EEECBTTSTTTTCEEEEEEETTTCCEEEECTTEEEEEEECSSEEEEEEE
T ss_pred             ccCceEEEEEcccchhheecceeeeEEEEE-EeecccCCCCCCceEEeeecccCccEEEecCCeEEEEEecCCceEEEec
Confidence            56777788854   4567899999999864 232        1  2356766  4589999999999999986 444445


Q ss_pred             EcC
Q 021698          285 WDG  287 (309)
Q Consensus       285 ~~g  287 (309)
                      .++
T Consensus       136 ~s~  138 (184)
T d2ixha1         136 TTD  138 (184)
T ss_dssp             ESS
T ss_pred             ccc
Confidence            444

>d1oi6a_ b.82.1.1 (A:) dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD {Amycolatopsis orientalis [TaxId: 31958]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: dTDP-sugar isomerase
domain: dTDP-4-keto-6-deoxy-glucose-5-epimerase EvaD
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=93.13  E-value=0.31  Score=40.42  Aligned_cols=68  Identities=18%  Similarity=0.143  Sum_probs=47.5

Q ss_pred             EEcCCCcCCccccC----ccEEEEEEeCEEEEEEEeC--------Ce--EEEecC--CcEEEECCCCcEEEEEcCC-eEE
Q 021698          219 RFKAGSVEPAHHHT----FGHDLVVLEGKKSVWNLTK--------GE--RFDLTV--GDYLFTPAGDVHRVKYYEE-TEF  281 (309)
Q Consensus       219 ~l~pG~~~p~H~H~----~~e~vyVl~G~l~v~~~~~--------~~--~~~L~p--Gd~i~iP~g~~H~~~n~~d-~~~  281 (309)
                      .-.+|....+|.|.    +..+++|++|++... .++        ++  ...|..  +..+|||+|..|.+.+.++ +.+
T Consensus        53 ~s~k~vlRGlH~q~~~~~q~Klv~ci~G~i~dv-~vD~R~~SpTfg~~~~~~L~~~~~~~l~IP~G~aHGf~~L~d~t~v  131 (202)
T d1oi6a_          53 MSKRGVVRGIHYTVTPPGTAKYVYCARGKAMDI-VIDIRVGSPTFGQWDSVLMDQQDPRAVYLPVGVGHAFVALEDDTVM  131 (202)
T ss_dssp             EECTTBEEEEEEECTTTCCCEEEEEEESCEEEE-EECCCBTCTTTTCEEEEEECSSSCCEEEECTTCEEEEEECSTTEEE
T ss_pred             cchhheeeeeeecccccchhheeeeccccEEEE-EEecccCCCccceeeeeecccccceeEEeccceeEEEeecccccee
Confidence            34567777889773    458899999999974 232        22  244554  4589999999999999985 444


Q ss_pred             EEEEcC
Q 021698          282 FIKWDG  287 (309)
Q Consensus       282 ~i~~~g  287 (309)
                      .+..++
T Consensus       132 ~Y~~s~  137 (202)
T d1oi6a_         132 SYMLSR  137 (202)
T ss_dssp             EEEESS
T ss_pred             EEecCC
Confidence            444444

>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: MoaB
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.23  Score=39.80  Aligned_cols=129  Identities=19%  Similarity=0.165  Sum_probs=73.3

Q ss_pred             CCCCCCcEEEE--EeCcccH---HHHHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCc
Q 021698            7 AAAPHPLKIIA--GADSFGA---ELKDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTG   79 (309)
Q Consensus         7 ~~~~~~mkI~i--g~D~~g~---~lk~~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG   79 (309)
                      +.+=+++||+|  -||..|.   .=-..|.+.|++.|++|++++.  ++...+...+.+...+    +.+|.-|.--|||
T Consensus         3 ~~~f~p~rvaiitvsD~~g~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd~~~~~~~l~~~~~~----~~~dlIiTtGGtg   78 (170)
T d1mkza_           3 STEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIAS----DDVQVVLITGGTG   78 (170)
T ss_dssp             CSSCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHS----SSCCEEEEESCCS
T ss_pred             CCCcCCceEEEEEEcCCCCcCCCChHHHHHHHHHHCCCEEEEeeeeCCCHHHHHHHHHhhhhc----ccceEEEEeeeec
Confidence            34456667554  4687766   2245788899999999999886  4555666666666665    5566555555666


Q ss_pred             hhhh----hhhcC-----CCceEEEEe-----CCHHHHHHH----HhhcCcceeeecccccCHHHHH-HHHHHHhcCCC
Q 021698           80 VGVA----IFANK-----NPGVFATTC-----LTPADALNT----RSINNCNVLAVSGMSTSKESAV-EILDTWLKTPF  139 (309)
Q Consensus        80 ~G~~----i~aNK-----~~giraa~~-----~~~~~A~~~----r~hNnaNvl~~g~~~~~~~~a~-~i~~~~l~~~f  139 (309)
                      .|--    -+..+     ++|+--+.-     .-...+-++    -..++.=|++|++.-.+...+. .++.-+|+...
T Consensus        79 ~g~~D~t~ea~~~~~~~~~~g~~~~~~~~s~~~~~p~~~~sr~~aG~~~~tli~~LPGnP~aa~~~~~~lv~P~L~~~~  157 (170)
T d1mkza_          79 LTEGDQAPEALLPLFDREVEGFGEVFRMLSFEEIGTSTLQSRAVAGVANKTLILAMPGSTKACRTAWENIIAPQLDART  157 (170)
T ss_dssp             SSTTCCHHHHHGGGCSEECHHHHHHHHHHHHHHHGGGGGGCCCEEEEETTEEEEEECSSHHHHHHHHHHTHHHHHCTTC
T ss_pred             cccccccHHHHHhhhhhhhhhhhHHhhhcccceeccccccccccccccCCEEEEECCCCHHHHHHHHHHHHHHHHHhcc
Confidence            5421    01111     111100000     000001111    2347889999999988877775 45666776543

>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: MoaB
species: Bacillus cereus [TaxId: 1396]

Probab=91.31  E-value=0.17  Score=39.75  Aligned_cols=65  Identities=23%  Similarity=0.165  Sum_probs=49.9

Q ss_pred             EEEEEeCcccH---HHHHHHHHHHHhCCCcEEEecC--CCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhh
Q 021698           14 KIIAGADSFGA---ELKDALVSHLRSLNIDVEDLGT--SDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGV   82 (309)
Q Consensus        14 kI~ig~D~~g~---~lk~~l~~~l~~~g~~v~d~g~--~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~   82 (309)
                      .|+.-||-+|-   .--..|.+.|++.|++|++++.  +++..+...+.+....    ..+|.-|.-.|||.|-
T Consensus         6 ~vitvsd~~~~~~D~ngp~L~~~l~~~G~~v~~~~iv~D~~~~i~~~l~~~~~~----~~~DlIvTtGGts~g~   75 (155)
T d1y5ea1           6 KIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHK----EDVDVVLTNGGTGITK   75 (155)
T ss_dssp             EEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTC----TTCSEEEEECCCSSST
T ss_pred             EEEEEeCCCCCCcCccHHHHHHHHHhcCCEEEEeeeecchHHHHHHHHHHHHhc----cCCCEEEEeeeeeccc
Confidence            36666888877   4456789999999999999986  4566666666666655    6788888888888883

>d1e5ra_ b.82.2.4 (A:) Type II Proline 3-hydroxylase (proline oxidase) {Streptomyces sp. [TaxId: 1931]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Type II Proline 3-hydroxylase (proline oxidase)
domain: Type II Proline 3-hydroxylase (proline oxidase)
species: Streptomyces sp. [TaxId: 1931]

Probab=90.50  E-value=0.094  Score=46.20  Aligned_cols=69  Identities=17%  Similarity=0.127  Sum_probs=47.3

Q ss_pred             EEEEcCCCcCCccccCc---------cEEEEEEeC--EEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCe-EEEEE
Q 021698          217 IVRFKAGSVEPAHHHTF---------GHDLVVLEG--KKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEET-EFFIK  284 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~---------~e~vyVl~G--~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~-~~~i~  284 (309)
                      .+++.||+.+++|.=..         .-+-+.|..  ...+  .++++.+.+++|+++|+..+.+|++.|.+++ .+.++
T Consensus        95 rirL~pGg~I~pH~D~~~~~~~~~~~~RiHIPL~Tn~~~~f--~v~~~~~~m~~Ge~w~~D~~~~H~v~N~sd~dRIHLV  172 (290)
T d1e5ra_          95 RSRNLKNAIVIPHRDFVELDREVDRYFRTFMVLEDSPLAFH--SNEDTVIHMRPGEIWFLDAATVHSAVNFSEISRQSLC  172 (290)
T ss_dssp             EEEEEESEEEEEECCC--------CBCCEEEECSCCTTEEE--EETTEEECCCTTEEEECCTTSCEEEEESSSSCCCEEE
T ss_pred             eeeecCCcEecCCcCCccccccCCceEEEEEEeecCCceEE--EECCEEEECCCCeEEEEcCCCeEEEECCCCCceEEEE
Confidence            45677888888775211         012233332  3344  6799999999999999999999999999864 44455


Q ss_pred             EcC
Q 021698          285 WDG  287 (309)
Q Consensus       285 ~~g  287 (309)
                      .+-
T Consensus       173 iD~  175 (290)
T d1e5ra_         173 VDF  175 (290)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=90.37  E-value=0.94  Score=34.86  Aligned_cols=125  Identities=11%  Similarity=0.078  Sum_probs=67.8

Q ss_pred             cEEEEE---eCcccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEE-ecCchhhhhhhcC
Q 021698           13 LKIIAG---ADSFGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVA-CGTGVGVAIFANK   88 (309)
Q Consensus        13 mkI~ig---~D~~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~-cgtG~G~~i~aNK   88 (309)
                      -||++|   .|.-... +..+...|+..||+|+++|.+.-++--...++..       ..+ .|.+ +..+-.+..    
T Consensus         4 ~kVvi~~~~gD~H~lG-~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~-------~~d-~v~lS~~~~~~~~~----   70 (137)
T d1ccwa_           4 KTIVLGVIGSDCHAVG-NKILDHAFTNAGFNVVNIGVLSPQELFIKAAIET-------KAD-AILVSSLYGQGEID----   70 (137)
T ss_dssp             CEEEEEEETTCCCCHH-HHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH-------TCS-EEEEEECSSTHHHH----
T ss_pred             CEEEEEecCCChhHHH-HHHHHHHHHHCCCeEEecccccCHHHHHHHHHhc-------CCC-EEEEeeccccchHH----
Confidence            378876   4655555 5788899999999999999975443223333332       223 3333 222222211    


Q ss_pred             CCceEEEEeCCHHHHHHHHhhcCcce-eeeccc-ccCHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHhHhhhhc
Q 021698           89 NPGVFATTCLTPADALNTRSINNCNV-LAVSGM-STSKESAVEILDTWLKTPFKAPCPASGLKPWDEKLSCFFDKSM  163 (309)
Q Consensus        89 ~~giraa~~~~~~~A~~~r~hNnaNv-l~~g~~-~~~~~~a~~i~~~~l~~~f~~~~~~~~~~~~l~~I~~~l~~s~  163 (309)
                      +        .+  ...+.|+-+..|| +.+|+. +++.....++.+.|-+--|..-|+++...   +++.+++...+
T Consensus        71 ~--------~~--~~~~l~~~~~~~i~iivGG~~~~~~~~~~~~~~~l~~~Gv~~if~~~t~~---~~~~~~l~~~l  134 (137)
T d1ccwa_          71 C--------KG--LRQKCDEAGLEGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPP---EVGIADLKKDL  134 (137)
T ss_dssp             H--------TT--HHHHHHHTTCTTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCH---HHHHHHHHHHH
T ss_pred             H--------HH--HHHHHHHhccCCCEEEEeCCcCCCccccHHHHHHHHHcCCCEEECCCCCH---HHHHHHHHHHh
Confidence            1        11  2233344444454 444554 44555566677777665565544444333   56766666543

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=83.84  E-value=3  Score=30.71  Aligned_cols=68  Identities=22%  Similarity=0.148  Sum_probs=43.4

Q ss_pred             EEEcCCCcCCccccCccEEEEEEeCEEEEEEEeCCeE---EEecCCcEEEECCCCcEEEEEcCCeEEEEEEcC
Q 021698          218 VRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTKGER---FDLTVGDYLFTPAGDVHRVKYYEETEFFIKWDG  287 (309)
Q Consensus       218 v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~~~~---~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~~~g  287 (309)
                      .++++|..+-.---....+.+|++|.+++....+++.   ..+.|||++-.+  .++.+.+.+++.++.+...
T Consensus        25 ~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~--~~~~v~A~~~s~v~~i~~~   95 (132)
T d1ft9a2          25 KIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMH--SGCLVEATERTEVRFADIR   95 (132)
T ss_dssp             EEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESC--SSCEEEESSCEEEEEECHH
T ss_pred             EEecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeecccccccccccc--ccccceeccceeeeeehHH
Confidence            4555665542222223467789999999864445544   567899976554  4667888888887655433

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.68  E-value=1.5  Score=32.80  Aligned_cols=79  Identities=11%  Similarity=0.062  Sum_probs=46.8

Q ss_pred             EEEEcCCCcCCccccCccEEEEEEeCEEEEEEEeC-------C---eEEEecCCcEE-----EECCCCcEEEEEcCCeEE
Q 021698          217 IVRFKAGSVEPAHHHTFGHDLVVLEGKKSVWNLTK-------G---ERFDLTVGDYL-----FTPAGDVHRVKYYEETEF  281 (309)
Q Consensus       217 ~v~l~pG~~~p~H~H~~~e~vyVl~G~l~v~~~~~-------~---~~~~L~pGd~i-----~iP~g~~H~~~n~~d~~~  281 (309)
                      ...+++|..+-..--+...+.+|++|++++.....       +   ....+.+|+++     +-..-..+.+++.+++.+
T Consensus        27 ~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~~fGe~~~~~~~~~~~t~~a~~~~~~  106 (147)
T d1cx4a2          27 TKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKC  106 (147)
T ss_dssp             EEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTCEESCHHHHHTCCCSSEEEEEEEEEE
T ss_pred             EEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCcEeeehhhcCCCCceEEEEECCCEEE
Confidence            45667776653322334577889999999842111       1   24677899976     223333456777778777


Q ss_pred             EEEEcCCcccccch
Q 021698          282 FIKWDGRWDMFFDE  295 (309)
Q Consensus       282 ~i~~~g~~~i~~~~  295 (309)
                      +.+....+.-.+.+
T Consensus       107 ~~i~~~~f~~ll~~  120 (147)
T d1cx4a2         107 LAMDVQAFERLLGP  120 (147)
T ss_dssp             EEEEHHHHHHHCGG
T ss_pred             EEEEHHHHHHHHHH
Confidence            76655555444443

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.30  E-value=0.57  Score=40.87  Aligned_cols=20  Identities=25%  Similarity=0.267  Sum_probs=18.2

Q ss_pred             eEEEecCCcEEEECCCCcEE
Q 021698          253 ERFDLTVGDYLFTPAGDVHR  272 (309)
Q Consensus       253 ~~~~L~pGd~i~iP~g~~H~  272 (309)
                      ..+.++|||++|||+|++|.
T Consensus       157 n~v~v~~Gd~i~IpaGtvHA  176 (299)
T d1zx5a1         157 NTFETTPYDTFVIRPGIPHA  176 (299)
T ss_dssp             EEEECCTTCEEEECTTCCEE
T ss_pred             cEEEcccCCEEEeCCCCcEE
Confidence            34789999999999999998

>d1ywka1 b.82.1.13 (A:1001-1260) 5-keto-4-deoxyuronate isomerase KduI {Enterococcus faecalis [TaxId: 1351]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: KduI-like
domain: 5-keto-4-deoxyuronate isomerase KduI
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.05  E-value=1.9  Score=36.91  Aligned_cols=56  Identities=7%  Similarity=-0.043  Sum_probs=40.8

Q ss_pred             EEEcCCCcCCccc-cCccEE-EEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEE
Q 021698          218 VRFKAGSVEPAHH-HTFGHD-LVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKY  275 (309)
Q Consensus       218 v~l~pG~~~p~H~-H~~~e~-vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n  275 (309)
                      +.++.+....... =..-|+ ++.+.|..++  .++++++.|.+.|++|+|.|..+-...
T Consensus        57 l~l~~~~~~~~~~flerRElgiVnigG~g~V--~VDG~~f~l~~~D~lYvg~G~~~V~f~  114 (260)
T d1ywka1          57 LEIILDKELGVDYFLERRELGVINIGGPGFI--EIDGAKETMKKQDGYYIGKETKHVRFS  114 (260)
T ss_dssp             EECCCSGGGTSSSTTTTEEEEEEECSSCEEE--EETTEEEEECTTCEEEECTTCCCEEEE
T ss_pred             eeccCchhccchhhhhhcEEEEEEeCCcEEE--EECCEEEecCCCcEEEECCCCceEEEe
Confidence            4555555543332 234455 4679999999  789999999999999999998765544

>d1p5dx1 c.84.1.1 (X:9-154) Phosphomannomutase/phosphoglucomutase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Phosphoglucomutase, first 3 domains
superfamily: Phosphoglucomutase, first 3 domains
family: Phosphoglucomutase, first 3 domains
domain: Phosphomannomutase/phosphoglucomutase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.50  E-value=1.2  Score=34.55  Aligned_cols=92  Identities=18%  Similarity=0.223  Sum_probs=63.7

Q ss_pred             CcEEEEEeCc--ccHHHHHHHHHHHHhCCCcEEEecCCCCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhhhcCC
Q 021698           12 PLKIIAGADS--FGAELKDALVSHLRSLNIDVEDLGTSDYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIFANKN   89 (309)
Q Consensus        12 ~mkI~ig~D~--~g~~lk~~l~~~l~~~g~~v~d~g~~~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~aNK~   89 (309)
                      ..+|+||.|.  .+-.+++.+.+-|.+.|.+|+|+|.-.-|.+...+    ..    ..++.||+|-.|           
T Consensus        40 ~~~VvIg~D~R~ss~~~~~~~~~gl~~~G~~V~~~g~~pTP~l~~~~----~~----~~~~~GI~ITAS-----------  100 (146)
T d1p5dx1          40 EPCVAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAA----NV----LEGKSGVMLTGS-----------  100 (146)
T ss_dssp             CCEEEEEECSCTTHHHHHHHHHHHHHTBTCEEEEEEECCHHHHHHHH----HH----SSCSEEEEECCT-----------
T ss_pred             CCEEEEEECCccchhhhhhhhheeeccCceEEEeccccccHHHHHHH----Hh----hccCceeEEeec-----------
Confidence            3589999996  56699999999999999999999976555444443    33    345677776443           


Q ss_pred             CceEEEEeCCHHHHHHHHhhcCcce----eeecccccCHHHHHHHHHHHhcCCCCC
Q 021698           90 PGVFATTCLTPADALNTRSINNCNV----LAVSGMSTSKESAVEILDTWLKTPFKA  141 (309)
Q Consensus        90 ~giraa~~~~~~~A~~~r~hNnaNv----l~~g~~~~~~~~a~~i~~~~l~~~f~~  141 (309)
                                         ||..+-    +...+.....+...+|.+.+.+.+|..
T Consensus       101 -------------------HNP~~~NGiK~~~~g~~~~~~~~~~i~~~~~~~~~~~  137 (146)
T d1p5dx1         101 -------------------HNPPDYNGFKIVVAGETLANEQIQALRERIEKNDLAS  137 (146)
T ss_dssp             -------------------TSCTTEEEEEEEETTEECCTHHHHHHHHHHHHTCCCC
T ss_pred             -------------------CCccccceEEEecCCCccChHHHHHHHHHHhcCCccc
Confidence                               333333    233344455566778889988888864

>d1qwra_ b.82.1.3 (A:) Mannose-6-phosphate isomerase ManA {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Mannose-6-phosphate isomerase ManA
species: Bacillus subtilis [TaxId: 1423]

Probab=82.48  E-value=0.38  Score=42.22  Aligned_cols=21  Identities=29%  Similarity=0.849  Sum_probs=18.8

Q ss_pred             eEEEecCCcEEEECCCCcEEE
Q 021698          253 ERFDLTVGDYLFTPAGDVHRV  273 (309)
Q Consensus       253 ~~~~L~pGd~i~iP~g~~H~~  273 (309)
                      ..+.|+|||++|||+|++|.+
T Consensus       154 n~~~l~~Gd~~~ipaG~~HA~  174 (315)
T d1qwra_         154 RRIKIKPGDFYYVPSGTLHAL  174 (315)
T ss_dssp             EEEECCTTCEEEECTTCCEEE
T ss_pred             cEEEcccCCEEEeCCCCeeEe
Confidence            347899999999999999985

>d1v7ra_ c.51.4.1 (A:) XTP pyrophosphatase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: ITPase-like
family: ITPase (Ham1)
domain: XTP pyrophosphatase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=82.12  E-value=0.74  Score=37.35  Aligned_cols=75  Identities=13%  Similarity=0.198  Sum_probs=52.4

Q ss_pred             cEEEEEeCcccHHHHHHHHHHHHhCCCcEEEecCC-------CCcchhHHHHHHhhcCCCCCCcceEEEEecCchhhhhh
Q 021698           13 LKIIAGADSFGAELKDALVSHLRSLNIDVEDLGTS-------DYYSIGAEVGRRVSSSDSSETTTRGLVACGTGVGVAIF   85 (309)
Q Consensus        13 mkI~ig~D~~g~~lk~~l~~~l~~~g~~v~d~g~~-------~y~~~a~~va~~v~~~~~~~~~~~gi~~cgtG~G~~i~   85 (309)
                      |||++++=-.| .+ +++++.|...|++|+.+..+       ++.+.+..-++.+.+     ....-++.+-||+=+. +
T Consensus         1 MKi~~aT~N~~-K~-~E~~~lL~~~~i~v~~~~~~~~e~~~~~~~~~a~~ka~~~~~-----~~~~p~laDDSGL~vd-a   72 (186)
T d1v7ra_           1 MKIFFITSNPG-KV-REVANFLGTFGIEIVQLKHEYPEIQAEKLEDVVDFGISWLKG-----KVPEPFMIEDSGLFIE-S   72 (186)
T ss_dssp             CEEEEECSCHH-HH-HHHHHHHHTTTCEEEEECCCCCCCCCSSHHHHHHHHHHHHTT-----TSCSSEEEEEEEEEEG-G
T ss_pred             CEEEEECCCHH-HH-HHHHHHhhhcCCeEEecCccCcccccccHHHHHHHHHHHHHh-----hccceeEeccceeehh-h
Confidence            89999987766 44 56888899999999987532       345566555566554     3344577888886544 4


Q ss_pred             hcCCCceEEE
Q 021698           86 ANKNPGVFAT   95 (309)
Q Consensus        86 aNK~~giraa   95 (309)
                      .|..|||+.|
T Consensus        73 L~g~PGi~sa   82 (186)
T d1v7ra_          73 LKGFPGVYSS   82 (186)
T ss_dssp             GTTTBGGGHH
T ss_pred             hcCCcccccH
Confidence            5899999654

>d1zx5a1 b.82.1.3 (A:1-299) Putative mannosephosphate isomerase AF0035 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Putative mannosephosphate isomerase AF0035
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.06  E-value=1.7  Score=37.61  Aligned_cols=38  Identities=24%  Similarity=0.082  Sum_probs=31.6

Q ss_pred             CccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEE
Q 021698          232 TFGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHR  272 (309)
Q Consensus       232 ~~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~  272 (309)
                      ..-.+++|++|++++  . +++.+.|++|++++||++.-+.
T Consensus       246 ~~~~il~~~~G~~~i--~-~~~~~~l~~G~s~~iPA~~~~~  283 (299)
T d1zx5a1         246 GVMNILYAAEGYFIL--R-GKETADLHRGYSCLVPASTDSF  283 (299)
T ss_dssp             SBCEEEEEEESCEEE--E-SSSEEEECTTCEEEECTTCCEE
T ss_pred             CceEEEEEeccEEEE--e-CCCEEEEcCCcEEEEecCCccE
Confidence            345778899999987  3 6778999999999999988754

>d1tq5a1 b.82.1.12 (A:1-231) Hypothetical protein YhhW {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Pirin-like
domain: Hypothetical protein YhhW
species: Escherichia coli [TaxId: 562]

Probab=81.14  E-value=3.6  Score=33.80  Aligned_cols=63  Identities=10%  Similarity=0.017  Sum_probs=43.6

Q ss_pred             EEEEEcCCCcCCccccC-ccEEEEEEeCEEEEEEEeCCeEEEecCCcEEEECCCCcEEEEEcCCeEEEEE
Q 021698          216 AIVRFKAGSVEPAHHHT-FGHDLVVLEGKKSVWNLTKGERFDLTVGDYLFTPAGDVHRVKYYEETEFFIK  284 (309)
Q Consensus       216 ~~v~l~pG~~~p~H~H~-~~e~vyVl~G~l~v~~~~~~~~~~L~pGd~i~iP~g~~H~~~n~~d~~~~i~  284 (309)
                      ....+.+|......... ..-++||++|++++    +++  .|.+||.+.+..+..=.+.+.++.+++++
T Consensus       163 ~~~~l~~g~~~~~~l~~~~~~~lyvi~G~l~i----~g~--~l~~gd~~~l~~~~~l~i~A~~~a~~LL~  226 (231)
T d1tq5a1         163 YRWALLKDEQSVHQIAAERRVWIQVVKGNVTI----NGV--KASTSDGLAIWDEQAISIHADSDSEVLLF  226 (231)
T ss_dssp             EEEEECTTCEEEECCCTTCEEEEEEEESEEEE----TTE--EEETTCEEEEESCSCEEEEESSSEEEEEE
T ss_pred             EEEEecCCceEEEcccCCccEEEEEEeeEEEE----CCE--EccCCCeEEECCCCeEEEEECCCCEEEEE
Confidence            34667777665322222 23578999999988    454  58899999888877777887777776543

>d1pmia_ b.82.1.3 (A:) Phosphomannose isomerase {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: Type I phosphomannose isomerase
domain: Phosphomannose isomerase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=80.88  E-value=0.6  Score=42.93  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.8

Q ss_pred             eEEEecCCcEEEECCCCcEEE
Q 021698          253 ERFDLTVGDYLFTPAGDVHRV  273 (309)
Q Consensus       253 ~~~~L~pGd~i~iP~g~~H~~  273 (309)
                      ....|+|||++|+|+|++|.+
T Consensus       266 N~v~l~pGdaifvpaG~~HAy  286 (440)
T d1pmia_         266 NHVGLNKGEAMFLQAKDPHAY  286 (440)
T ss_dssp             EEEEECTTCEEEECTTCCEEE
T ss_pred             eeecccccceEEcCCCCceEe
Confidence            447799999999999999986