Citrus Sinensis ID: 021707

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MEDNECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYFFLFILPVSYALSGR
Secondary Structure (PSIPRED)
ccccHHcHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHHHHHHccccEEEccccccccEEccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHcccccHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHccccccEEEcccHHHHHccccccccEEEccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHcHHHccccccccccHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHcccccccHHHHHHHccccccccHHHHHHHHHHHHHcccEEEccccccEEEEEcccHHHHcccccccccHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHccccccccEEEEEcHHHHccccccccEEEEEcccccccccccEEEccccHHHccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mednecrdgrkkvrlantplsvSQILTCilpsgggdaeNLQCILRLLTSygvfsehrefrgerKYSLTEIGKSLvtdaeglsyapyVLQHHQDAFMSAwplvheavldptiepfvkvhgepaysyygkmpemnglmrraisgvsvpfMTSVLdsyngfkgVKRLVDVGGSAGDCLRMILQKHHFIceginfdlpevvgeapsipgvthiggdmfnsipAANAIFMKWVLATWTDDECKLIMENCYKALLAGgkliacepvllddsnesQRTRALLEGDIFVMTIYrakddnsfyFFLFILPVSYALSGR
Flexible Loop (DISEMBL)
mednecrdgrkkvrlantplsvsqILTCILPSGGGDAENLQCILRLLTSYGVfsehrefrgerkysLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYFFLFILPVSYALSGR
Low Complexity Region (SEG)
MEDNECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYFFLFILPVSYALSGR
Disordered region (IsUnstruct)
***************ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS***QRTRALLEGDIFVMTIYRAKDDNSFYFFLFILPVSYAL***
Disordered Region (DISOPRED)
***NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYFFLFILPVSYALS**
Disordered Region (DISEMBL)
**********KKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYFFLFILPVSYALSGR
Disordered Region (DISPRO)
***NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYFFLFILPVSY*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDNECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYFFLFILPVSYALSGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	309	2.2.26 [Sep-21-2011]
Q9SWC2	313	Caffeic acid 3-O-methyltr	N/A	no	0.815	0.805	0.409	6e-49
Q6T1F5	365	Caffeic acid 3-O-methyltr	N/A	no	0.844	0.715	0.405	2e-47
O82054	362	Caffeic acid 3-O-methyltr	N/A	no	0.818	0.698	0.387	3e-47
Q9XGW0	361	Caffeic acid 3-O-methyltr	N/A	no	0.825	0.706	0.396	8e-47
O81646	359	Caffeic acid 3-O-methyltr	N/A	no	0.825	0.710	0.389	1e-46
Q9FK25	363	Flavone 3'-O-methyltransf	no	no	0.847	0.721	0.385	1e-46
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.783	0.691	0.407	2e-46
Q9FQY8	359	Caffeic acid 3-O-methyltr	N/A	no	0.825	0.710	0.389	3e-46
Q06509	364	Caffeic acid 3-O-methyltr	N/A	no	0.773	0.656	0.401	4e-46
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.841	0.712	0.384	9e-46

>sp|Q9SWC2|COMT1_EUCGL Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1

 Score =  194 bits (493), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 106/259 (40%), Positives = 154/259 (59%), Gaps = 7/259 (2%)

Query: 30  LPSGGGDAE-NLQCILRLLTSYGVFS----EHREFRGERKYSLTEIGKSLVTDAEGLSYA 84
           LP+   DA   L  I RLL SY V +    +  E + ER Y L  + K LV + +G+S A
Sbjct: 48  LPTQNPDAPVMLDRIFRLLASYSVLTCTLCDLPEGKVERLYGLAPLCKFLVKNEDGVSLA 107

Query: 85  PYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVS 144
           P  L      F+ +W  + +A+L+  I PF K HG  A+ Y G  P  N +  RA+S  S
Sbjct: 108 PLRLIDQDRVFLESWYYMKDAILEGGI-PFHKAHGMTAFDYPGTDPRFNKIFNRAMSDHS 166

Query: 145 VPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIP 204
              M  +L++YNGF+G+K +VDVGG  G  L MI+ K+  I +GINFDLP V+ +APS P
Sbjct: 167 TIMMKKILETYNGFEGLKTVVDVGGGTGAILNMIVAKYPSI-KGINFDLPHVIEDAPSYP 225

Query: 205 GVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264
           GV H+GGDMF +IP  +A+FMKW+   W+D+ C  +++NCY AL   G++I  E +L   
Sbjct: 226 GVEHVGGDMFVNIPNGDAVFMKWICHDWSDEHCAKLLKNCYDALPVNGRVIVAEYILPAY 285

Query: 265 SNESQRTRALLEGDIFVMT 283
            ++S  T+ ++  D  ++T
Sbjct: 286 PDQSLSTKGVIHMDCIMLT 304

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.
Eucalyptus globulus (taxid: 34317)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8

>sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/269 (40%), Positives = 156/269 (57%), Gaps = 8/269 (2%)

Query: 20  LSVSQILTCILPSGGGDAE-NLQCILRLLTSYGVFS----EHREFRGERKYSLTEIGKSL 74
           +S SQ L   LPS   D    L  ILRLL SY V +    +  + R ER Y L  + K L
Sbjct: 59  VSPSQ-LAAALPSSQPDTPVMLDRILRLLASYSVLNCKLRDLPDARVERLYGLAPVCKFL 117

Query: 75  VTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNG 134
             +++G+S AP +L +     M +W  + +AVLD  I PF K +G  A+ Y+GK P  N 
Sbjct: 118 TKNSDGVSMAPLLLMNQDKILMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGKDPRFNK 176

Query: 135 LMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP 194
           +  + +S  S   M  +L +Y+GF G+K +VDVGG  G  L MI+ K+  + +GINFDLP
Sbjct: 177 VFNQGMSNHSTITMKKILQTYDGFGGLKTVVDVGGGTGATLNMIISKYPNL-KGINFDLP 235

Query: 195 EVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKL 254
            VV +APS  GV H+GGDMF S+P  +AIFMKW+   W+D  C   ++NCYKAL   GK+
Sbjct: 236 HVVEDAPSYAGVEHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLAFLKNCYKALPKDGKV 295

Query: 255 IACEPVLLDDSNESQRTRALLEGDIFVMT 283
           I  E +L +  +    T+ ++  D+ ++ 
Sbjct: 296 ILAECILPEAPDSKLTTKNVILIDVIMLA 324

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ammi majus (taxid: 48026)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O82054|COMT1_SACOF Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 100/258 (38%), Positives = 144/258 (55%), Gaps = 5/258 (1%)

Query: 29  ILPSGGGDAENLQCILRLLTSYGVFS---EHREFRGERKYSLTEIGKSLVTDAEGLSYAP 85
           + P+    A+ +  +LRLL SY V     E ++ + ER+YS   +GK L  + +G+S A 
Sbjct: 66  VAPTNPDAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPVGKWLTPNEDGVSMAA 125

Query: 86  YVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSV 145
             L +     M +W  + +AVLD  I PF K +G  A+ Y+G  P  N +    +   SV
Sbjct: 126 LTLMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNRVFNEGMKNHSV 184

Query: 146 PFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPG 205
                +L+ Y GF+GV  LVDVGG  G  L  I   HH   +GINFDLP V+ EAP  PG
Sbjct: 185 IITKKLLEFYTGFEGVSTLVDVGGGIGATLHAI-TSHHPQIKGINFDLPHVISEAPPFPG 243

Query: 206 VTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS 265
           V H+GGDMF S+PA +AI MKW+L  W+D  C  +++NCY AL   GK+I  E VL  ++
Sbjct: 244 VQHVGGDMFKSVPAGDAILMKWILHDWSDAHCATLLKNCYDALPENGKVIIVECVLPVNT 303

Query: 266 NESQRTRALLEGDIFVMT 283
               + + +   D+ ++ 
Sbjct: 304 EAVPKAQGVFHVDMIMLA 321

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Saccharum officinarum (taxid: 4547)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1

 Score =  187 bits (475), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 104/262 (39%), Positives = 149/262 (56%), Gaps = 7/262 (2%)

Query: 26  LTCILPSGGGDAE-NLQCILRLLTSYGVFSEHREFRG----ERKYSLTEIGKSLVTDAEG 80
           L   LP+   DA   L  ILRLLTSY +     +       ER Y L  + K L  + +G
Sbjct: 60  LAAQLPTTNPDAHVMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDG 119

Query: 81  LSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAI 140
           +S AP  L +     M +W  + +AV+D  I PF K +G  A+ Y+G  P  N +  + +
Sbjct: 120 VSMAPLTLMNQDKVLMESWYHLSDAVVDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNQGM 178

Query: 141 SGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEA 200
           S  S   M  +L++Y GF G+K +VDVGG  G  L MI+ K+  I +GINFDLP V+ +A
Sbjct: 179 SNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSI-KGINFDLPHVIEDA 237

Query: 201 PSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260
           PS PGV H+GGDMF S+P  +AIFMKW+   W+D+ C   ++NCY AL   GK+I  E V
Sbjct: 238 PSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECV 297

Query: 261 LLDDSNESQRTRALLEGDIFVM 282
           L +  +    T+ ++  D+ ++
Sbjct: 298 LPEAPDTGLATKNVVHIDVIML 319

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O81646|COMT1_CAPCH Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/262 (38%), Positives = 153/262 (58%), Gaps = 7/262 (2%)

Query: 26  LTCILPSGGGDAE-NLQCILRLLTSYGVFS----EHREFRGERKYSLTEIGKSLVTDAEG 80
           L   LP+   +A   L  + RLL +Y V +       + R ER YSL  + K L  + +G
Sbjct: 58  LAAQLPTKNPEAPVMLDRMFRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKFLTKNGDG 117

Query: 81  LSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAI 140
           +S AP +L +     M +W  + +AVLD  + PF K +G   + Y+G  P  N +    +
Sbjct: 118 VSIAPILLMNQDKVLMESWYHLTDAVLDGGV-PFNKAYGMTTFEYHGTDPRFNKVFNCGM 176

Query: 141 SGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEA 200
           S  +   M  +L+ Y GF+G+  +VDVGG  G  + MI+ K+  I +GINFDLP V+ +A
Sbjct: 177 SDHTTLSMKKILEDYTGFEGLNSIVDVGGGTGATVNMIVSKYPSI-KGINFDLPHVIRDA 235

Query: 201 PSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260
           PS PGV  +GGDMF S+P A+AIFMKW+   W+DD C  +++NCY+AL A GK+I  E +
Sbjct: 236 PSYPGVEQVGGDMFVSVPKADAIFMKWICHDWSDDHCIKLLKNCYEALPANGKVIIVECI 295

Query: 261 LLDDSNESQRTRALLEGDIFVM 282
           L +  + S  T++ + GDI ++
Sbjct: 296 LPEAPDTSAATKSKVHGDIIML 317

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Capsicum chinense (taxid: 80379)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/270 (38%), Positives = 160/270 (59%), Gaps = 8/270 (2%)

Query: 18  TPLSVSQILTCILPSGGGDAE-NLQCILRLLTSYGVFS-EHREFRG---ERKYSLTEIGK 72
           +P+S ++I +  LP+   +A   L  ILRLLTSY V +  +R+  G   ER Y L  + K
Sbjct: 53  SPMSPTEIAS-KLPTKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCK 111

Query: 73  SLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEM 132
            L  + +G+S A   L +     M +W  + +A+LD  I PF K +G  A+ Y+G  P  
Sbjct: 112 YLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGI-PFNKAYGMSAFEYHGTDPRF 170

Query: 133 NGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFD 192
           N +    +S  S   M  +L++Y GF+G+  LVDVGG  G  L+MI+ K+  + +GINFD
Sbjct: 171 NKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNL-KGINFD 229

Query: 193 LPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGG 252
           LP V+ +APS PG+ H+GGDMF S+P  +AIFMKW+   W+D+ C   ++NCY++L   G
Sbjct: 230 LPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDG 289

Query: 253 KLIACEPVLLDDSNESQRTRALLEGDIFVM 282
           K+I  E +L +  + S  T+ ++  D  ++
Sbjct: 290 KVILAECILPETPDSSLSTKQVVHVDCIML 319

Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/248 (40%), Positives = 148/248 (59%), Gaps = 6/248 (2%)

Query: 40  LQCILRLLTSYGVF----SEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAF 95
           L  ILRLL +Y V     +   +   ER Y L  + K L  +A+G+S AP +L +     
Sbjct: 64  LDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKVL 123

Query: 96  MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSY 155
           M +W  + +AVLD  I PF K +G  A+ Y+G  P  N +  + +S  S   M  +L+ Y
Sbjct: 124 MESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVY 182

Query: 156 NGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFN 215
            GF+G+K +VDVGG  G  L MI+ K+  I +GINF+LP VV +APS  GV H+GGDMF 
Sbjct: 183 RGFEGLKTVVDVGGGTGATLNMIISKYPTI-KGINFELPHVVEDAPSHSGVEHVGGDMFV 241

Query: 216 SIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALL 275
           S+P  +AIFMKW+   W+DD C+ +++NCY+AL   GK+I  E VL +  + S  T+ ++
Sbjct: 242 SVPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVV 301

Query: 276 EGDIFVMT 283
             D+ ++ 
Sbjct: 302 HVDVVMLA 309

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/262 (38%), Positives = 153/262 (58%), Gaps = 7/262 (2%)

Query: 26  LTCILPSGGGDAE-NLQCILRLLTSYGVFS----EHREFRGERKYSLTEIGKSLVTDAEG 80
           L   LP+   +A   L  +LRLL +Y V +       + R ER YSL  + K L  +A+G
Sbjct: 58  LAAQLPTKNPEAPVMLDRMLRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKLLTKNADG 117

Query: 81  LSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAI 140
           +S AP +L +     M +W  + +AVLD  + PF K +G  A+ Y+G  P  N +  R +
Sbjct: 118 VSVAPLLLMNQDKVLMESWYHLTDAVLDGGV-PFNKAYGMTAFEYHGTDPRFNKVFNRGM 176

Query: 141 SGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEA 200
           S  S   M  +L+ Y GF+G+  +VDVGG  G  + MI+ K+  I +GINFDL  V+ +A
Sbjct: 177 SDHSTMTMKKILEDYKGFEGLNSIVDVGGGTGATVNMIVSKYPSI-KGINFDLSHVIEDA 235

Query: 201 PSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV 260
           P+ PGV H+G DMF S+P A+AIFMKW+   W+D+ C   ++NCY+AL A GK++  E +
Sbjct: 236 PAYPGVEHVGRDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECI 295

Query: 261 LLDDSNESQRTRALLEGDIFVM 282
           L +  + S  T+  +  DI ++
Sbjct: 296 LPETPDTSAATKNAVHVDIVML 317

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Capsicum annuum (taxid: 4072)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q06509|COMT1_MAIZE Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1

 Score =  185 bits (469), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/244 (40%), Positives = 137/244 (56%), Gaps = 5/244 (2%)

Query: 43  ILRLLTSYGVFS---EHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAW 99
           +LRLL SY V     E R+ R ER+YS   + K L  + +G+S A   L +     M +W
Sbjct: 82  MLRLLASYDVVRCQMEDRDGRYERRYSAAPVCKWLTPNEDGVSMAALALMNQDKVLMESW 141

Query: 100 PLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFK 159
             + +AVLD  I PF K +G  A+ Y+G     N +    +   SV     +LD Y GF+
Sbjct: 142 YYLKDAVLDGGI-PFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDFYTGFE 200

Query: 160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPA 219
           GV  LVDVGG  G  L  I  +H  I  G+NFDLP V+ EAP  PGV H+GGDMF S+PA
Sbjct: 201 GVSTLVDVGGGVGATLHAITSRHPHI-SGVNFDLPHVISEAPPFPGVRHVGGDMFASVPA 259

Query: 220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDI 279
            +AI MKW+L  W+D  C  +++NCY AL   GK+I  E VL  ++  + + + +   D+
Sbjct: 260 GDAILMKWILHDWSDAHCATLLKNCYDALPENGKVIVVECVLPVNTEATPKAQGVFHVDM 319

Query: 280 FVMT 283
            ++ 
Sbjct: 320 IMLA 323

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  184 bits (466), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 103/268 (38%), Positives = 155/268 (57%), Gaps = 8/268 (2%)

Query: 20  LSVSQILTCILPSGGGDAE-NLQCILRLLTSYGVFS----EHREFRGERKYSLTEIGKSL 74
           LS S+I +  LP+   DA   L  ILRLL SY + +    +  + + ER Y L  + K L
Sbjct: 57  LSTSEIASH-LPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFL 115

Query: 75  VTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNG 134
             + +G+S +P  L +     M +W  + +A+LD  I PF K +G  A+ Y+G  P  N 
Sbjct: 116 TKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILDGGI-PFNKAYGMTAFEYHGTDPRFNK 174

Query: 135 LMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP 194
           +  + +S  S   M  +L++Y GF+G+  LVDVGG  G  +  I+ K+  I +GINFDLP
Sbjct: 175 VFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSI-KGINFDLP 233

Query: 195 EVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKL 254
            V+ +APS PGV H+GGDMF S+P A+A+FMKW+   W+D  C   ++NCY AL   GK+
Sbjct: 234 HVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKV 293

Query: 255 IACEPVLLDDSNESQRTRALLEGDIFVM 282
           I  E +L    + S  T+ ++  D+ ++
Sbjct: 294 ILVECILPVAPDTSLATKGVVHVDVIML 321

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
224069629	364	beta-alanine n-methyltransferase related	0.880	0.747	0.747	1e-119
225441106	358	PREDICTED: caffeic acid 3-O-methyltransf	0.877	0.756	0.733	1e-115
147799198	358	hypothetical protein VITISV_030414 [Viti	0.877	0.756	0.730	1e-115
356549592	355	PREDICTED: caffeic acid 3-O-methyltransf	0.880	0.766	0.728	1e-115
255556786	357	o-methyltransferase, putative [Ricinus c	0.877	0.759	0.712	1e-113
15231756	359	putative O-diphenol-O-methyl transferase	0.883	0.760	0.707	1e-110
449440171	409	PREDICTED: caffeic acid 3-O-methyltransf	0.880	0.665	0.692	1e-110
357464631	358	Caffeic acid 3-O-methyltransferase [Medi	0.880	0.759	0.591	2e-94
6688808	358	O-diphenol-O-methyl transferase [Medicag	0.880	0.759	0.591	7e-94
357464627	358	Caffeic acid 3-O-methyltransferase [Medi	0.880	0.759	0.573	2e-90

>gi|224069629|ref|XP_002326388.1| beta-alanine n-methyltransferase related [Populus trichocarpa] gi|222833581|gb|EEE72058.1| beta-alanine n-methyltransferase related [Populus trichocarpa]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/281 (74%), Positives = 232/281 (82%), Gaps = 9/281 (3%)

Query: 16  ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRG--------ERKYSL 67
           +N PLS SQIL  I  S G D ENLQ ILR+LTSYGVF EH             ERKYSL
Sbjct: 48  SNAPLSASQILQRI-ASTGSDPENLQRILRMLTSYGVFEEHLTIESSPLDGSASERKYSL 106

Query: 68  TEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYG 127
           TE+GK+LVTD EGLSYAPYVLQHHQDA M AWPLVHEAVLDPT EPFVK +GEPAY YYG
Sbjct: 107 TEVGKTLVTDTEGLSYAPYVLQHHQDALMKAWPLVHEAVLDPTTEPFVKANGEPAYDYYG 166

Query: 128 KMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICE 187
           K PEMN LM +A+SGVSVPFM ++LD Y+GFKGV+RLVDVGGSAGDCLRMIL+KH  + +
Sbjct: 167 KQPEMNELMLKAMSGVSVPFMEAMLDGYDGFKGVERLVDVGGSAGDCLRMILKKHPGVRQ 226

Query: 188 GINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKA 247
           GINFDLPEVV +AP IPGVT++GGDMF SIP  +AIFMKW+L TWTD+ECKLIMENCYKA
Sbjct: 227 GINFDLPEVVAKAPIIPGVTNVGGDMFKSIPDGDAIFMKWILTTWTDNECKLIMENCYKA 286

Query: 248 LLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           L  GGKLIACEPVL  DS++S RTRALLEGDIFVMTIYRAK
Sbjct: 287 LPVGGKLIACEPVLPKDSDDSHRTRALLEGDIFVMTIYRAK 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441106|ref|XP_002264566.1| PREDICTED: caffeic acid 3-O-methyltransferase [Vitis vinifera]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/278 (73%), Positives = 233/278 (83%), Gaps = 7/278 (2%)

Query: 16  ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH-----REFRGERKYSLTEI 70
           +N PLS SQILT +LPSG  D  NLQ ILRLLT+YGVF+EH        +  RKYSLT+I
Sbjct: 46  SNAPLSASQILTRVLPSG--DPHNLQRILRLLTTYGVFAEHLLTDPSSDQVLRKYSLTDI 103

Query: 71  GKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMP 130
           GK+LVTDA+GLSY  YVLQH+Q+  M+AWPLVHEAV+D T EPFVK +GEPAYSYYGK P
Sbjct: 104 GKTLVTDADGLSYGAYVLQHYQEELMTAWPLVHEAVVDSTTEPFVKANGEPAYSYYGKKP 163

Query: 131 EMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGIN 190
           EMN LM+RA+SGVSVPFM ++L+ YNGF GV+RLVDVGGSAGDCLRMILQKH  I EGIN
Sbjct: 164 EMNDLMQRAMSGVSVPFMKAILNGYNGFDGVQRLVDVGGSAGDCLRMILQKHTNIKEGIN 223

Query: 191 FDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLA 250
           FDLPEVV +AP+IPGVTH+GGDMF S+P  +AIFMKWVL TWTD+ECKLIM+NCY AL  
Sbjct: 224 FDLPEVVAKAPNIPGVTHVGGDMFKSVPDGDAIFMKWVLTTWTDEECKLIMKNCYNALPV 283

Query: 251 GGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           GGK+IACEPVL  +S+ S RTRALLEGDIFVMTIYRAK
Sbjct: 284 GGKMIACEPVLPKESDNSLRTRALLEGDIFVMTIYRAK 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799198|emb|CAN65776.1| hypothetical protein VITISV_030414 [Vitis vinifera]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 203/278 (73%), Positives = 233/278 (83%), Gaps = 7/278 (2%)

Query: 16  ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH-----REFRGERKYSLTEI 70
           +N PLS SQILT +LPSG  D  NLQ ILRLLT+YGVF+EH        +  RKYSLT+I
Sbjct: 46  SNAPLSASQILTRVLPSG--DPHNLQRILRLLTTYGVFAEHLLTDPSSDQVLRKYSLTDI 103

Query: 71  GKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMP 130
           GK+LVTDA+GLSY  YVLQH+Q+  M+AWPLVHEAV+D T EPFVK +GEPAYSYYGK P
Sbjct: 104 GKTLVTDADGLSYGAYVLQHYQEELMTAWPLVHEAVVDSTTEPFVKANGEPAYSYYGKKP 163

Query: 131 EMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGIN 190
           EMN LM+RA+SGVSVPFM ++L+ Y+GF GV+RLVDVGGSAGDCLRMILQKH  I EGIN
Sbjct: 164 EMNDLMQRAMSGVSVPFMKAILNGYSGFDGVQRLVDVGGSAGDCLRMILQKHTNIKEGIN 223

Query: 191 FDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLA 250
           FDLPEVV +AP+IPGVTH+GGDMF S+P  +AIFMKWVL TWTD+ECKLIM+NCY AL  
Sbjct: 224 FDLPEVVAKAPTIPGVTHVGGDMFKSVPDGDAIFMKWVLTTWTDEECKLIMKNCYNALPV 283

Query: 251 GGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           GGK+IACEPVL  +S+ S RTRALLEGDIFVMTIYRAK
Sbjct: 284 GGKMIACEPVLPKESDNSLRTRALLEGDIFVMTIYRAK 321

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549592|ref|XP_003543176.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Glycine max]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/273 (72%), Positives = 231/273 (84%), Gaps = 1/273 (0%)

Query: 16  ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLV 75
           AN PLS ++IL  +LP+GGGDAENLQ +LR+L SYGVF EH    GERKYSLT++GK+LV
Sbjct: 47  ANNPLSAAEILPRLLPAGGGDAENLQRLLRMLASYGVFYEHLS-AGERKYSLTDVGKTLV 105

Query: 76  TDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGL 135
           TD +GLSYA YVLQHHQDA M AWP+VHEAV+DPT EPF + +GEPAY YY K PEMN L
Sbjct: 106 TDEQGLSYAHYVLQHHQDALMRAWPMVHEAVVDPTKEPFERANGEPAYGYYLKHPEMNDL 165

Query: 136 MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPE 195
           M RA+SGVSVPF+ ++L+ Y+GF+GV++LVDVGGS GDCLRMIL+KH  I EGINFDLPE
Sbjct: 166 MVRAMSGVSVPFIRAMLEGYDGFQGVEKLVDVGGSGGDCLRMILEKHPTIKEGINFDLPE 225

Query: 196 VVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLI 255
           VV +AP IP VTH+GGDMF  IP  +AIFMKWVL TWTD+ECK IM+NC+KAL  GGKLI
Sbjct: 226 VVAKAPQIPFVTHVGGDMFKFIPQGDAIFMKWVLTTWTDEECKHIMQNCHKALPEGGKLI 285

Query: 256 ACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           ACEPVL +DS+ES RTRALLEGDIFVMTIYRAK
Sbjct: 286 ACEPVLPEDSDESHRTRALLEGDIFVMTIYRAK 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556786|ref|XP_002519426.1| o-methyltransferase, putative [Ricinus communis] gi|223541289|gb|EEF42840.1| o-methyltransferase, putative [Ricinus communis]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/275 (71%), Positives = 233/275 (84%), Gaps = 4/275 (1%)

Query: 17  NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR---EFRGERKYSLTEIGKS 73
           N+PLS S+IL+ I  SGG D +NLQ ILR+L+SY VF+EH    +   ER+YSLTEIGK+
Sbjct: 47  NSPLSASEILSRINLSGG-DPDNLQRILRMLSSYNVFTEHLSAVDGVTERRYSLTEIGKT 105

Query: 74  LVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMN 133
           LVTD  GLSY  YVLQHHQDA M AWPLVHEAVLD T EPF K +GEPAY YYGK PEMN
Sbjct: 106 LVTDVNGLSYGAYVLQHHQDALMRAWPLVHEAVLDSTTEPFAKANGEPAYDYYGKRPEMN 165

Query: 134 GLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL 193
            LM++A+SG+SVPFM +VL+ Y+GF+GV+++VDVGGSAGDCL+ ILQK+  + EGINFDL
Sbjct: 166 ELMQKAMSGLSVPFMKAVLNGYDGFQGVEKIVDVGGSAGDCLKTILQKYPNVREGINFDL 225

Query: 194 PEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGK 253
           PEVV +AP+IPGVTH+GGDMF S+P+A+AIFMKW+L TWTDDECK+IMENCYKAL  GGK
Sbjct: 226 PEVVAKAPNIPGVTHVGGDMFKSVPSADAIFMKWILTTWTDDECKVIMENCYKALPVGGK 285

Query: 254 LIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           LIACEPVL + +++S RTRALLEGDIFVMTIYRAK
Sbjct: 286 LIACEPVLPNQTDDSHRTRALLEGDIFVMTIYRAK 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231756|ref|NP_190882.1| putative O-diphenol-O-methyl transferase [Arabidopsis thaliana] gi|14194165|gb|AAK56277.1|AF367289_1 AT3g53140/T4D2_70 [Arabidopsis thaliana] gi|6630734|emb|CAB64217.1| caffeic acid O-methyltransferase-like protein [Arabidopsis thaliana] gi|22137206|gb|AAM91448.1| AT3g53140/T4D2_70 [Arabidopsis thaliana] gi|332645520|gb|AEE79041.1| putative O-diphenol-O-methyl transferase [Arabidopsis thaliana]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/277 (70%), Positives = 230/277 (83%), Gaps = 4/277 (1%)

Query: 16  ANTPLSVSQILTCI-LPSG---GGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71
           AN+PLS ++IL  + LPS    GGD ENLQ ILR+LTSYGVFSEH     ERKYSLT++G
Sbjct: 46  ANSPLSAAEILPRLHLPSHTTIGGDPENLQRILRMLTSYGVFSEHLVGSIERKYSLTDVG 105

Query: 72  KSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPE 131
           K+LVTD+ GLSYA YVLQHHQ+A M AWPLVH AV++P  EP+VK +GE AY+ YGK  E
Sbjct: 106 KTLVTDSGGLSYAAYVLQHHQEALMRAWPLVHTAVVEPETEPYVKANGEAAYAQYGKSEE 165

Query: 132 MNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINF 191
           MNGLM++A+SGVSVPFM ++LD Y+GFK V  LVDVGGSAGDCLRMILQ+   + EGINF
Sbjct: 166 MNGLMQKAMSGVSVPFMKAILDGYDGFKSVDILVDVGGSAGDCLRMILQQFPNVREGINF 225

Query: 192 DLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAG 251
           DLPEVV +AP+IPGVTH+GGDMF S+P+A+AIFMKWVL TWTD+ECK IM+NCY AL  G
Sbjct: 226 DLPEVVAKAPNIPGVTHVGGDMFQSVPSADAIFMKWVLTTWTDEECKQIMKNCYNALPVG 285

Query: 252 GKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           GKLIACEPVL  +++ES RTRALLEGDIFVMTIYR K
Sbjct: 286 GKLIACEPVLPKETDESHRTRALLEGDIFVMTIYRTK 322

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440171|ref|XP_004137858.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus] gi|449524758|ref|XP_004169388.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/276 (69%), Positives = 229/276 (82%), Gaps = 4/276 (1%)

Query: 16  ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH-REFRGERKYSLTEIGKSL 74
           +N+PLS S+IL  ++PSGG DA NL+ ILR+LTSYGVF EH        +YSLT++GK+L
Sbjct: 98  SNSPLSASEILARVVPSGG-DAHNLERILRMLTSYGVFEEHLSPNSSNHRYSLTDVGKTL 156

Query: 75  VTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNG 134
           VTD++GLSYAPYVLQHHQDA M AWP VHEA +D T EPFV+ +GE AYSYYGK  EMN 
Sbjct: 157 VTDSDGLSYAPYVLQHHQDALMRAWPRVHEAAIDSTTEPFVRANGEAAYSYYGKKTEMNE 216

Query: 135 LMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP 194
           LM+RA++GVSVPFM +VLD Y+GFKGV++LVDVGGSAGDCLRMILQK+  I EGINFDLP
Sbjct: 217 LMQRAMAGVSVPFMKAVLDGYDGFKGVEKLVDVGGSAGDCLRMILQKYPHIKEGINFDLP 276

Query: 195 EVVGEAPSIP--GVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGG 252
           EVV  AP+IP  GV+H+GGDMF SIP  +AIFMKWVL+TWTDDECK+I+ENC K+L  GG
Sbjct: 277 EVVARAPTIPETGVSHVGGDMFKSIPTGDAIFMKWVLSTWTDDECKIILENCCKSLPVGG 336

Query: 253 KLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           KLIACEP L + ++ES RTRALL  D+F+MTIY+AK
Sbjct: 337 KLIACEPTLPEKTDESHRTRALLASDVFIMTIYKAK 372

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464631|ref|XP_003602597.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|355491645|gb|AES72848.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 161/272 (59%), Positives = 210/272 (77%)

Query: 17  NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT 76
           NTPLS SQIL+ + P+GGGDAENLQ ILRLLT+Y +F+E     G+RKYSLTE+GK+LV 
Sbjct: 50  NTPLSASQILSIVRPNGGGDAENLQRILRLLTTYAIFAEDLSSNGKRKYSLTEVGKALVP 109

Query: 77  DAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLM 136
           D +GLSY  YVLQH+QD ++ AWPLV EAV DPT+EPF K+HGE AY+Y  K P+   L 
Sbjct: 110 DDDGLSYGTYVLQHYQDQYLRAWPLVGEAVEDPTVEPFEKLHGEGAYAYCMKRPDEMSLF 169

Query: 137 RRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEV 196
             ++SG+S+P M  +L+ Y+GFKGV+ LVDVGG++G  L MI+ K+  I +GINFDLP++
Sbjct: 170 YASMSGMSMPHMNEMLEKYDGFKGVESLVDVGGNSGVILNMIMNKYPNILKGINFDLPDM 229

Query: 197 VGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIA 256
           +  AP +PG+TH+GGD    +PA +AIF KW + TWTD+ECK +++NCYKAL   GKLI 
Sbjct: 230 ISSAPQLPGITHVGGDALELVPAGDAIFTKWTMLTWTDEECKKVLQNCYKALPVNGKLIV 289

Query: 257 CEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           CEPV  + ++ESQRTRALL GDIF+MT+Y+ K
Sbjct: 290 CEPVSPELTDESQRTRALLSGDIFIMTMYKTK 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6688808|emb|CAB65279.1| O-diphenol-O-methyl transferase [Medicago sativa subsp. x varia]

 Score =  349 bits (896), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 161/272 (59%), Positives = 211/272 (77%)

Query: 17  NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT 76
           NTPLS SQIL+ + P+GGGDAENLQ ILRLLT+Y +F+E     G+RKYSLT+IGK+LV 
Sbjct: 50  NTPLSASQILSIVRPNGGGDAENLQRILRLLTTYAIFAEDLSSNGKRKYSLTDIGKALVP 109

Query: 77  DAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLM 136
           D +GLSYA YVLQH+QD ++ AWPLV +AV D ++EPF K+HGE AY+Y  K P+   L 
Sbjct: 110 DDDGLSYATYVLQHYQDQYLRAWPLVGDAVEDASVEPFEKLHGEGAYAYCMKRPDEMSLF 169

Query: 137 RRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEV 196
             ++SG+S+P M  +L+ Y+GFKGV+ LVDVGG++G  L MI+ K+  I +GINFDLP++
Sbjct: 170 YASMSGLSMPHMNEMLEKYDGFKGVETLVDVGGNSGVILNMIMNKYPNILKGINFDLPDM 229

Query: 197 VGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIA 256
           +  AP +PG+TH+GGD   S+PA +AIF KW + TWTD+ECK +++NCYKAL   GKLI 
Sbjct: 230 ISSAPQLPGITHVGGDALESVPAGDAIFTKWTMLTWTDEECKKVLQNCYKALPVNGKLIV 289

Query: 257 CEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           CEPV  + ++ESQRTRALL GDIF+MT+YR K
Sbjct: 290 CEPVSPELTDESQRTRALLSGDIFIMTMYRTK 321

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464627|ref|XP_003602595.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|217072478|gb|ACJ84599.1| unknown [Medicago truncatula] gi|355491643|gb|AES72846.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|388498338|gb|AFK37235.1| unknown [Medicago truncatula]

 Score =  338 bits (867), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 156/272 (57%), Positives = 208/272 (76%)

Query: 17  NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT 76
           NTPLS SQIL+ + P+GGGDAENLQ ILRLLT+Y +F E     GERKYSLT++GK+LV 
Sbjct: 50  NTPLSASQILSIVRPNGGGDAENLQRILRLLTTYTIFVEDLSSNGERKYSLTDVGKALVP 109

Query: 77  DAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLM 136
           D  GL+ A + +QHHQD ++ AWPLV +AV DPT+EPF K+HGE AY+Y  K PE   L 
Sbjct: 110 DDHGLTCASFFVQHHQDPYLRAWPLVGDAVEDPTVEPFEKLHGEAAYAYCTKGPEEMSLF 169

Query: 137 RRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEV 196
             ++SG+S+P+M  +L++Y+GFKGV+ LVDVGG++G  L MI+ K+  I +GINFDLP++
Sbjct: 170 YASMSGMSLPYMREMLENYDGFKGVETLVDVGGNSGVSLNMIMNKYPNILKGINFDLPDM 229

Query: 197 VGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIA 256
           +  AP  PG+TH+GGD   S+PA +AIF+KW + TWTD+E K  +++CYKAL   GKLI 
Sbjct: 230 ISSAPQYPGITHVGGDALESVPAGDAIFIKWTVLTWTDEEFKKALQSCYKALPVAGKLIL 289

Query: 257 CEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           CEPVL + ++ES+RTRALL  DI++MT+YR K
Sbjct: 290 CEPVLPEQTDESKRTRALLAADIWIMTMYRTK 321

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	309
TAIR|locus:2102038	359	AT3G53140 [Arabidopsis thalian	0.883	0.760	0.707	4.2e-102
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.847	0.721	0.385	1e-45
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.812	0.697	0.359	3.6e-41
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.812	0.682	0.357	2.6e-40
UNIPROTKB|P93324	372	P93324 "Isoliquiritigenin 2'-O	0.877	0.728	0.362	6.8e-40
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.880	0.749	0.345	3.7e-39
TAIR|locus:2038026	352	AT1G33030 [Arabidopsis thalian	0.854	0.75	0.344	6.3e-37
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.773	0.627	0.350	1.2e-33
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.851	0.690	0.340	1.2e-33
TAIR|locus:2164087	378	AT5G53810 [Arabidopsis thalian	0.822	0.671	0.343	5.2e-33

TAIR|locus:2102038 AT3G53140 [Arabidopsis thaliana (taxid:3702)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 196/277 (70%), Positives = 230/277 (83%)

Query:    16 ANTPLSVSQILTCI-LPSG---GGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG 71
             AN+PLS ++IL  + LPS    GGD ENLQ ILR+LTSYGVFSEH     ERKYSLT++G
Sbjct:    46 ANSPLSAAEILPRLHLPSHTTIGGDPENLQRILRMLTSYGVFSEHLVGSIERKYSLTDVG 105

Query:    72 KSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPE 131
             K+LVTD+ GLSYA YVLQHHQ+A M AWPLVH AV++P  EP+VK +GE AY+ YGK  E
Sbjct:   106 KTLVTDSGGLSYAAYVLQHHQEALMRAWPLVHTAVVEPETEPYVKANGEAAYAQYGKSEE 165

Query:   132 MNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINF 191
             MNGLM++A+SGVSVPFM ++LD Y+GFK V  LVDVGGSAGDCLRMILQ+   + EGINF
Sbjct:   166 MNGLMQKAMSGVSVPFMKAILDGYDGFKSVDILVDVGGSAGDCLRMILQQFPNVREGINF 225

Query:   192 DLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAG 251
             DLPEVV +AP+IPGVTH+GGDMF S+P+A+AIFMKWVL TWTD+ECK IM+NCY AL  G
Sbjct:   226 DLPEVVAKAPNIPGVTHVGGDMFQSVPSADAIFMKWVLTTWTDEECKQIMKNCYNALPVG 285

Query:   252 GKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
             GKLIACEPVL  +++ES RTRALLEGDIFVMTIYR K
Sbjct:   286 GKLIACEPVLPKETDESHRTRALLEGDIFVMTIYRTK 322

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 104/270 (38%), Positives = 160/270 (59%)

Query:    18 TPLSVSQILTCILPSGGGDAE-NLQCILRLLTSYGVFS-EHREFRG---ERKYSLTEIGK 72
             +P+S ++I +  LP+   +A   L  ILRLLTSY V +  +R+  G   ER Y L  + K
Sbjct:    53 SPMSPTEIASK-LPTKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCK 111

Query:    73 SLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEM 132
              L  + +G+S A   L +     M +W  + +A+LD  I PF K +G  A+ Y+G  P  
Sbjct:   112 YLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGI-PFNKAYGMSAFEYHGTDPRF 170

Query:   133 NGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFD 192
             N +    +S  S   M  +L++Y GF+G+  LVDVGG  G  L+MI+ K+  + +GINFD
Sbjct:   171 NKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNL-KGINFD 229

Query:   193 LPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGG 252
             LP V+ +APS PG+ H+GGDMF S+P  +AIFMKW+   W+D+ C   ++NCY++L   G
Sbjct:   230 LPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDG 289

Query:   253 KLIACEPVLLDDSNESQRTRALLEGDIFVM 282
             K+I  E +L +  + S  T+ ++  D  ++
Sbjct:   290 KVILAECILPETPDSSLSTKQVVHVDCIML 319

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 93/259 (35%), Positives = 143/259 (55%)

Query:    30 LPSGGGDA--ENLQCILRLLTSYGVFS----EHREFRGERKYSLTEIGKSLVTDAEGLSY 83
             LPS    A  + +  +LRLL SY V S    E ++ R  R+Y    + K L  + +G+S 
Sbjct:    62 LPSTANPAAADMVDRMLRLLASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPNEDGVSM 121

Query:    84 APYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGV 143
             A   L +     M +W  + +AVLD  I PF K +G  A+ Y+G  P  N +    +   
Sbjct:   122 AALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRFNRVFNEGMKNH 180

Query:   144 SVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI 203
             S+     +L+ Y GF+G+  +VDVGG  G  +  I   +  I +GINFDLP V+ EA   
Sbjct:   181 SIIITKKLLEVYKGFEGLGTIVDVGGGVGATVGAITAAYPAI-KGINFDLPHVISEAQPF 239

Query:   204 PGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263
             PGVTH+GGDMF  +P+ +AI MKW+L  W+D+ C  +++NCY AL A GK++  E +L  
Sbjct:   240 PGVTHVGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPV 299

Query:   264 DSNESQRTRALLEGDIFVM 282
             +   + + + +   D+ ++
Sbjct:   300 NPEATPKAQGVFHVDMIML 318

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 93/260 (35%), Positives = 140/260 (53%)

Query:    30 LPSGGGDA--ENLQCILRLLTSYGV----FSEHREFRGERKYSLTEIGKSLVTDAEGLSY 83
             LPS    A  + +  +LRLL SY V      E  + +  R+Y+   + K L  + +G+S 
Sbjct:    69 LPSKANPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGVSM 128

Query:    84 APYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGV 143
             A   L +     M +W  + +AVLD  I PF K +G  A+ Y+G     N +    +   
Sbjct:   129 AALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMTAFEYHGTDARFNRVFNEGMKNH 187

Query:   144 SVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI 203
             SV     +LD Y GF     +VDVGG  G  +  ++ +H  I  GIN+DLP V+ EAP  
Sbjct:   188 SVIITKKLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHI-RGINYDLPHVISEAPPF 246

Query:   204 PGVTHIGGDMFNSIP-AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL 262
             PGV H+GGDMF S+P   +AI MKW+L  W+D+ C  +++NCY AL   GK++  E VL 
Sbjct:   247 PGVEHVGGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVLP 306

Query:   263 DDSNESQRTRALLEGDIFVM 282
             + S+ + R + +   D+ ++
Sbjct:   307 ESSDATAREQGVFHVDMIML 326

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

UNIPROTKB|P93324 P93324 "Isoliquiritigenin 2'-O-methyltransferase" [Medicago sativa (taxid:3879)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 103/284 (36%), Positives = 157/284 (55%)

Query:    20 LSVSQILTCILPSGG--GDAEN-LQCILRLLTSYGVF-SEHREFR---GERKYSLTEIGK 72
             +S S+I +  LP+     D  N L  +LRLL SY V  S  R       ER Y L+ +GK
Sbjct:    63 MSPSEIASK-LPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGK 121

Query:    73 SLVTDAEGLSY-APYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPE 131
              LV D E   Y A +       A +  W    EAV+D  I+ F  VHG   Y + GK  +
Sbjct:   122 YLVPD-ESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKK 180

Query:   132 MNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINF 191
             MN +  +++  V    M  +L+ Y GF+G+  LVDVGG +G  L +I+ K+  I +GINF
Sbjct:   181 MNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINF 239

Query:   192 DLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAG 251
             DLP+V+  AP + G+ H+GGDMF S+P  +A+ +K V   W+D++C   + NC+KAL   
Sbjct:   240 DLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPN 299

Query:   252 GKLIACEPVLLDDSNESQRTRAL--LEGDIFVMTIYRAKDDNSF 293
             GK+I  E +L ++ N S+ ++ +  L+  +F+    R + +  +
Sbjct:   300 GKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQY 343

GO:0030751 "licodione 2'-O-methyltransferase activity" evidence=IDA

GO:0033802 "isoliquiritigenin 2'-O-methyltransferase activity" evidence=IDA

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 96/278 (34%), Positives = 146/278 (52%)

Query:    12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFS----EHREFRGERKYSL 67
             K R   + LS   + +   P        +  +LR L +Y V +    +  E R  R Y L
Sbjct:    46 KARPLGSYLSPVDLASMAAPKNPHAPMMIDRLLRFLVAYSVCTCKLVKDEEGRESRAYGL 105

Query:    68 TEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYG 127
              ++GK L+ D +G S APYVL     A    W  + EA+ +     + + +    + Y  
Sbjct:   106 GKVGKKLIKDEDGFSIAPYVLAGCTKAKGGVWSYLTEAIQEGGASAWERANEALIFEYMK 165

Query:   128 KMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICE 187
             K   +  +   +++  +   M  +L++Y GF+GV   VDVGGS G  L  IL K+  I +
Sbjct:   166 KNENLKKIFNESMTNHTSIVMKKILENYIGFEGVSDFVDVGGSLGSNLAQILSKYPHI-K 224

Query:   188 GINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKA 247
             GINFDLP +V EAP I GV HIGGDMF+ IP    I MKW+L  W D++C  I++NC KA
Sbjct:   225 GINFDLPHIVKEAPQIHGVEHIGGDMFDEIPRGEVILMKWILHDWNDEKCVEILKNCKKA 284

Query:   248 LLAGGKLIACEPVLLDDSNESQ-RTRALLEGDIFVMTI 284
             L   G++I  E ++  + +E+   T+  L  D+ +M++
Sbjct:   285 LPETGRIIVIEMIVPREVSETDLATKNSLSADLTMMSL 322

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 94/273 (34%), Positives = 138/273 (50%)

Query:    19 PLSVSQILTCIL--PSGGGDAENLQCILRLLTSYGVF--SEHREFRGE--RKYSLTEIGK 72
             P S SQI + +        D+  +  ILR L SY +   S   E  GE    Y L  + K
Sbjct:    40 PSSASQIFSLLSNETKKHHDSSLVNRILRFLASYSILTCSVSTE-HGEPFAIYGLAPVAK 98

Query:    73 SLVTDAEGL-SYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPE 131
                 +  G  S AP V           W  + ++VL+  + PF   HG  A    G    
Sbjct:    99 YFTKNQNGGGSLAPMVNLFQDKVVTDMWYNLKDSVLEGGL-PFNNTHGSSAVELVGSDSR 157

Query:   132 MNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINF 191
                + + ++ G +  F+   L +YNGF GVK LVDVGG  G  L  I+ KH  I + INF
Sbjct:   158 FREVFQSSMKGFNEVFIEEFLKNYNGFDGVKSLVDVGGGDGSLLSRIISKHTHIIKAINF 217

Query:   192 DLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAG 251
             DLP V+  +   PG+ H+ GDMF + P   AIFMKW+L +W DD C  I+ NCY++L + 
Sbjct:   218 DLPTVINTSLPSPGIEHVAGDMFTNTPKGEAIFMKWMLHSWDDDHCVKILSNCYQSLPSN 277

Query:   252 GKLIACEPVLLDDSNESQRTRALLEGDIFVMTI 284
             GK+I  + V+ +   ++   R+L + ++F+M +
Sbjct:   278 GKVIVVDMVIPEFPGDTLLDRSLFQFELFMMNM 310

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 89/254 (35%), Positives = 132/254 (51%)

Query:    17 NTPLSVSQILTCILPSGGGDAEN---LQCILRLLTSYGVFS-------EH-REFRGERKY 65
             +T LS  +I  C LP+   + E    L  +L LL S+ +         E+ R  + ER Y
Sbjct:    64 DTWLSPCEI-ACSLPTKPTNPEAPVLLDRMLSLLVSHSILKCRMIETGENGRTGKIERVY 122

Query:    66 SLTEIGKSLVTDAEGL-SYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYS 124
             +   + K  + D++G  S  P  +  H   F   W  + + +L+   + F   HG   + 
Sbjct:   123 AAEPVCKYFLRDSDGTGSLVPLFMLLHTQVFFKTWTNLKDVILEGR-DAFNSAHGMKIFE 181

Query:   125 YYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF 184
             Y         L  RA+S  S   M  VLD Y GF+ V  LVDVGG  G  L ++  K+  
Sbjct:   182 YINSDQPFAELFNRAMSEPSTMIMKKVLDVYRGFEDVNTLVDVGGGNGTVLGLVTSKYPH 241

Query:   185 ICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENC 244
             I +G+NFDL +V+ +AP  PGV H+ GDMF  +P  +A+FMKW+L  W D++C  I++NC
Sbjct:   242 I-KGVNFDLAQVLTQAPFYPGVEHVSGDMFVEVPKGDAVFMKWILHDWGDEDCIKILKNC 300

Query:   245 YKALLAGGKLIACE 258
             +K+L   GK+I  E
Sbjct:   301 WKSLPEKGKIIIVE 314

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 95/279 (34%), Positives = 144/279 (51%)

Query:    18 TPLSVSQILTCILPSGGGDAEN---LQCILRLLTSYGVFS----EHREF--RG--ERKYS 66
             T LS S+I    LP+   + E    L  +LRLL S+ +      E RE    G  ER Y+
Sbjct:    65 TWLSPSEIAVS-LPNKPTNPEAPVLLDRMLRLLVSHSILKCCMVESRENGQTGKIERVYA 123

Query:    67 LTEIGKSLVTDAEGL-SYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSY 125
                I K  + D++G  S +  +L  H    +  W  + + +L+   + F   H    + Y
Sbjct:   124 AEPICKYFLKDSDGSGSLSSLLLLLHSQVILKTWTNLKDVILEGK-DAFSSAHDMRLFEY 182

Query:   126 YGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFI 185
                  + + L  RA+S  S   M  VL+ Y GF+ V  LVDVGG  G  L +I  K+  I
Sbjct:   183 ISSDDQFSKLFHRAMSESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITSKYPHI 242

Query:   186 CEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCY 245
              +G+NFDL +V+ +AP  PGV H+ GDMF  +P  +AIFMKW+L  W D++C  I++NC+
Sbjct:   243 -KGVNFDLAQVLTQAPFYPGVKHVSGDMFIEVPKGDAIFMKWILHDWGDEDCIKILKNCW 301

Query:   246 KALLAGGKLIACEPVL-LDDSNESQRTRALLEGDIFVMT 283
             K+L   GK+I  E +  ++          +L  D+ ++T
Sbjct:   302 KSLPEKGKVIIVEMITPMEPKPNDFSCNTVLGMDLLMLT 340

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 92/268 (34%), Positives = 132/268 (49%)

Query:    40 LQCILRLLTSYGVFS-----EHREFRG--ERKYSLTEIGKSLVTDAEGLS--YAPYVLQH 90
             L  +LR L S+ V       E     G  ER Y+   + K L+  ++ +S  +A   +  
Sbjct:    86 LDRMLRFLVSHSVLKCRTVIEENGQTGKVERVYAAEPVCKYLLNKSDDVSGSFASLFMLD 145

Query:    91 HQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTS 150
               D F+  W  + + +L+   + F   HG   + Y         +  RA+   S      
Sbjct:   146 LSDVFIKTWTHLEDVILEGR-DAFSSAHGMKLFEYIQADERFGKVFNRAMLESSTMVTEK 204

Query:   151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPEVVGEAPSIPGVTHI 209
             VL  Y GFK VK LVDVGG  G+ L +I  K+ H I  GINFDL  V+  A S PGV H+
Sbjct:   205 VLKFYEGFKDVKTLVDVGGGLGNTLGLITSKYPHLI--GINFDLAPVLANAHSYPGVNHV 262

Query:   210 GGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQ 269
              GDMF  IP  +AIFMKW+L  WTD++C  I++NC+K+L   GKLI  E V   ++    
Sbjct:   263 AGDMFIKIPKGDAIFMKWILHDWTDEQCVAILKNCWKSLEENGKLIIVEMVTPVEAKSGD 322

Query:   270 RTRALLEG-DIFVMTIYRAKDDNSFYFF 296
                 ++ G D+ ++T      +   Y F
Sbjct:   323 ICSNIVFGMDMTMLTQCSGGKERDLYEF 350

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: COMTL4 beta-alanine n-methyltransferase related (364 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	309
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	1e-65

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  205 bits (524), Expect = 1e-65
 Identities = 84/226 (37%), Positives = 125/226 (55%), Gaps = 5/226 (2%)

Query: 60  RGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHG 119
           RG   Y LT   K LV   +  S AP +L +     + +W  + +AV +    PF +  G
Sbjct: 2   RGGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGP-PFERAFG 60

Query: 120 EPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMIL 179
            P + Y G  PE N +  RA++  S   M  +L++   F G+  LVDVGG  G     I+
Sbjct: 61  MPFFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIV 120

Query: 180 QKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECK 238
           + + H   +GI FDLP V+ +APS   V  +GGD F S+P A+AI +KWVL  W+D++C 
Sbjct: 121 RAYPH--IKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCV 178

Query: 239 LIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTI 284
            I++ CY+AL  GGK+I  E VL +D ++   T  LL  D+ ++ +
Sbjct: 179 KILKRCYEALPPGGKVIVVEMVLPEDPDDDLETEVLL-LDLNMLVL 223

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	309
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	100.0
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	100.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	100.0
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.62
PRK06922	677	hypothetical protein; Provisional	99.61
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.59
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.59
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.55
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.54
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.53
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.51
PRK11207	197	tellurite resistance protein TehB; Provisional	99.48
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.48
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.46
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.44
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.43
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.42
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.42
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.41
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.4
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.39
PLN02244	340	tocopherol O-methyltransferase	99.39
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.38
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.36
PLN02490	340	MPBQ/MSBQ methyltransferase	99.35
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.33
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.33
PLN02336	475	phosphoethanolamine N-methyltransferase	99.32
PRK12335	287	tellurite resistance protein TehB; Provisional	99.29
PRK08317	241	hypothetical protein; Provisional	99.29
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.28
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.27
PLN02336	475	phosphoethanolamine N-methyltransferase	99.27
PLN03075	296	nicotianamine synthase; Provisional	99.27
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.27
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.26
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.26
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.25
PRK06202	232	hypothetical protein; Provisional	99.25
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.25
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.24
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.24
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.23
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.22
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.2
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.19
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.19
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.18
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.18
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.18
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.17
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.17
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.16
PRK05785	226	hypothetical protein; Provisional	99.16
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.16
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.15
TIGR03438	301	probable methyltransferase. This model represents	99.15
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.14
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.13
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.11
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.08
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.07
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.07
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.07
PRK04266	226	fibrillarin; Provisional	99.07
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.05
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.04
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.01
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.0
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.99
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.98
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.98
PRK07402	196	precorrin-6B methylase; Provisional	98.98
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.97
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.94
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.94
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.93
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.93
PRK04457	262	spermidine synthase; Provisional	98.93
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.92
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.9
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.86
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.84
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.84
COG4123	248	Predicted O-methyltransferase [General function pr	98.83
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.82
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.81
TIGR00438	188	rrmJ cell division protein FtsJ.	98.81
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.8
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.79
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.76
KOG2361	264	consensus Predicted methyltransferase [General fun	98.76
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.75
KOG4300	252	consensus Predicted methyltransferase [General fun	98.75
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.74
PRK14967	223	putative methyltransferase; Provisional	98.74
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.74
PTZ00146	293	fibrillarin; Provisional	98.73
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.73
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.72
PRK14968	188	putative methyltransferase; Provisional	98.72
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.71
KOG2899	288	consensus Predicted methyltransferase [General fun	98.7
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.69
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.68
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.68
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.68
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.68
PRK00811	283	spermidine synthase; Provisional	98.65
KOG3010	261	consensus Methyltransferase [General function pred	98.62
PHA03411	279	putative methyltransferase; Provisional	98.61
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.6
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.6
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.58
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.56
PLN02366	308	spermidine synthase	98.56
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.54
PRK01581	374	speE spermidine synthase; Validated	98.54
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.53
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.52
COG2890	280	HemK Methylase of polypeptide chain release factor	98.52
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.51
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.5
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.48
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.47
PRK03612	521	spermidine synthase; Provisional	98.46
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.45
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.44
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.44
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.43
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.42
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.42
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.4
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.4
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.39
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.32
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.32
PHA03412	241	putative methyltransferase; Provisional	98.3
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.29
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.28
KOG1271	227	consensus Methyltransferases [General function pre	98.28
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.25
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.25
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.25
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.22
PLN02672	1082	methionine S-methyltransferase	98.22
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.21
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.16
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.16
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.13
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.1
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.09
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.08
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.08
KOG2904	328	consensus Predicted methyltransferase [General fun	98.06
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.06
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.06
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.05
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.02
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.99
PLN02476	278	O-methyltransferase	97.97
PLN02823	336	spermine synthase	97.96
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.95
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	97.94
PRK04148	134	hypothetical protein; Provisional	97.93
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.92
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.9
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.89
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.89
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.88
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.87
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.81
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.81
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.79
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.78
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.75
COG4122	219	Predicted O-methyltransferase [General function pr	97.74
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.73
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.73
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.72
KOG1331	293	consensus Predicted methyltransferase [General fun	97.72
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.72
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.69
PRK00536	262	speE spermidine synthase; Provisional	97.69
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.59
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	97.57
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.52
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.46
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.45
KOG3115	249	consensus Methyltransferase-like protein [General	97.43
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	97.42
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.42
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.23
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.16
COG4076	252	Predicted RNA methylase [General function predicti	97.13
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.12
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	97.06
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.06
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.98
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.94
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	96.85
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	96.85
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.83
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	96.79
PF13679	141	Methyltransf_32: Methyltransferase domain	96.79
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.78
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	96.76
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	96.76
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.67
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	96.63
KOG2940	325	consensus Predicted methyltransferase [General fun	96.57
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	96.51
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	96.51
COG2521	287	Predicted archaeal methyltransferase [General func	96.49
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	96.49
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.47
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	96.46
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.46
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	96.45
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.26
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	96.16
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	96.1
COG3897	218	Predicted methyltransferase [General function pred	96.04
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	96.04
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	96.03
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.02
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	95.97
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	95.9
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	95.87
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	95.85
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	95.85
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	95.81
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	95.8
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	95.78
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	95.78
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	95.75
COG4798	238	Predicted methyltransferase [General function pred	95.73
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	95.7
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.66
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	95.66
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	95.66
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	95.65
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	95.61
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	95.58
COG3355	126	Predicted transcriptional regulator [Transcription	95.54
COG4301	321	Uncharacterized conserved protein [Function unknow	95.49
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.47
PRK10141	117	DNA-binding transcriptional repressor ArsR; Provis	95.46
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	95.41
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.41
PRK03902	142	manganese transport transcriptional regulator; Pro	95.31
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	95.21
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	95.19
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	95.19
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.19
smart00347	101	HTH_MARR helix_turn_helix multiple antibiotic resi	95.17
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.15
TIGR02702	203	SufR_cyano iron-sulfur cluster biosynthesis transc	95.13
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.04
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	95.0
PLN02668	386	indole-3-acetate carboxyl methyltransferase	94.96
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	94.89
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	94.86
PHA00738	108	putative HTH transcription regulator	94.81
KOG4058	199	consensus Uncharacterized conserved protein [Funct	94.81
COG4742	260	Predicted transcriptional regulator [Transcription	94.81
COG2520	341	Predicted methyltransferase [General function pred	94.75
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	94.72
PRK11050	152	manganese transport regulator MntR; Provisional	94.67
KOG3924	419	consensus Putative protein methyltransferase invol	94.61
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	94.6
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	94.51
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	94.5
COG1414	246	IclR Transcriptional regulator [Transcription]	94.49
COG3315	297	O-Methyltransferase involved in polyketide biosynt	94.47
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	94.47
PRK11569	274	transcriptional repressor IclR; Provisional	94.4
COG2345	218	Predicted transcriptional regulator [Transcription	94.37
COG1321	154	TroR Mn-dependent transcriptional regulator [Trans	94.35
PRK10857	164	DNA-binding transcriptional regulator IscR; Provis	94.23
PF13601	80	HTH_34: Winged helix DNA-binding domain; PDB: 1UB9	94.18
TIGR00738	132	rrf2_super rrf2 family protein (putative transcrip	94.17
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	94.08
COG1959	150	Predicted transcriptional regulator [Transcription	94.06
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	94.01
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	94.01
TIGR02337	118	HpaR homoprotocatechuate degradation operon regula	93.97
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	93.97
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	93.94
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	93.85
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	93.75
KOG2730	263	consensus Methylase [General function prediction o	93.71
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	93.62
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	93.59
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	93.52
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	93.46
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	93.42
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	93.19
smart00420	53	HTH_DEOR helix_turn_helix, Deoxyribose operon repr	93.04
COG0742	187	N6-adenine-specific methylase [DNA replication, re	93.04
PF01325	60	Fe_dep_repress: Iron dependent repressor, N-termin	92.93
TIGR02944	130	suf_reg_Xantho FeS assembly SUF system regulator,	92.89
smart00529	96	HTH_DTXR Helix-turn-helix diphteria tox regulatory	92.85
PF03444	78	HrcA_DNA-bdg: Winged helix-turn-helix transcriptio	92.79
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	92.76
COG2265	432	TrmA SAM-dependent methyltransferases related to t	92.72
PRK11920	153	rirA iron-responsive transcriptional regulator; Re	92.72
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	92.57
PF12802	62	MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP	92.51
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	92.34
PRK14165	217	winged helix-turn-helix domain-containing protein/	92.16
smart00345	60	HTH_GNTR helix_turn_helix gluconate operon transcr	92.12
PF01638	90	HxlR: HxlR-like helix-turn-helix; InterPro: IPR002	91.95
PRK11512	144	DNA-binding transcriptional repressor MarR; Provis	91.76
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	91.7
PRK11014	141	transcriptional repressor NsrR; Provisional	91.63
TIGR01884	203	cas_HTH CRISPR locus-related DNA-binding protein.	91.6
TIGR01610	95	phage_O_Nterm phage replication protein O, N-termi	91.53
COG4190	144	Predicted transcriptional regulator [Transcription	91.44
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	91.29
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	91.18
KOG3201	201	consensus Uncharacterized conserved protein [Funct	90.99
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	90.88
PF01047	59	MarR: MarR family; InterPro: IPR000835 The MarR-ty	90.74
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	90.72
PRK06266	178	transcription initiation factor E subunit alpha; V	90.68
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	90.62
cd07377	66	WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi	90.56
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	90.19
TIGR00122	69	birA_repr_reg BirA biotin operon repressor domain.	90.04
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	89.96
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	89.93
TIGR01889	109	Staph_reg_Sar staphylococcal accessory regulator f	89.61
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	89.53
PRK03573	144	transcriptional regulator SlyA; Provisional	89.48
COG1378	247	Predicted transcriptional regulators [Transcriptio	89.09
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	88.98
PF08461	66	HTH_12: Ribonuclease R winged-helix domain; InterP	88.97
PF00325	32	Crp: Bacterial regulatory proteins, crp family; In	88.95
COG1041	347	Predicted DNA modification methylase [DNA replicat	88.85
PRK10870	176	transcriptional repressor MprA; Provisional	88.69
PF13545	76	HTH_Crp_2: Crp-like helix-turn-helix domain; PDB:	88.56
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	88.46
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	88.32
PF07789	155	DUF1627: Protein of unknown function (DUF1627); In	87.92
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	87.22
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	86.98
PRK15431	78	ferrous iron transport protein FeoC; Provisional	86.95
PRK04172	489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	86.94
COG1497	260	Predicted transcriptional regulator [Transcription	86.85
PHA02943	165	hypothetical protein; Provisional	86.85
PF01726	65	LexA_DNA_bind: LexA DNA binding domain; InterPro:	86.85
KOG2352	482	consensus Predicted spermine/spermidine synthase [	86.48
PF14394	171	DUF4423: Domain of unknown function (DUF4423)	86.3
cd07153	116	Fur_like Ferric uptake regulator(Fur) and related	86.17
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	85.8
PF07381	90	DUF1495: Winged helix DNA-binding domain (DUF1495)	85.48
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	85.48
PF05732	165	RepL: Firmicute plasmid replication protein (RepL)	85.42
PF08221	62	HTH_9: RNA polymerase III subunit RPC82 helix-turn	85.08
PF02002	105	TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024	84.52
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	84.23
PRK04214	412	rbn ribonuclease BN/unknown domain fusion protein;	84.22
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	83.93
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	83.63
PF10007	92	DUF2250: Uncharacterized protein conserved in arch	83.38
PF00392	64	GntR: Bacterial regulatory proteins, gntR family;	83.33
PRK13509	251	transcriptional repressor UlaR; Provisional	83.04
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	82.95
COG1733	120	Predicted transcriptional regulators [Transcriptio	82.49
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	82.39
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	82.23
PLN02853	492	Probable phenylalanyl-tRNA synthetase alpha chain	82.21
PRK10742	250	putative methyltransferase; Provisional	82.19
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	82.16
PF13730	55	HTH_36: Helix-turn-helix domain	81.94
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	81.79
PF13518	52	HTH_28: Helix-turn-helix domain	81.62
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	81.4
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	81.32
PRK11179	153	DNA-binding transcriptional regulator AsnC; Provis	81.11
PRK11169	164	leucine-responsive transcriptional regulator; Prov	80.46
PF12324	77	HTH_15: Helix-turn-helix domain of alkylmercury ly	80.38
PF12793	115	SgrR_N: Sugar transport-related sRNA regulator N-t	80.1
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	80.05

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=100.00  E-value=9.4e-43  Score=309.54  Aligned_cols=229  Identities=28%  Similarity=0.462  Sum_probs=198.8

Q ss_pred             CceEEcChhchhhhcCCCCCChHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhh
Q 021707           62 ERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAIS  141 (309)
Q Consensus        62 ~~~y~~t~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~  141 (309)
                      +++|+||+.|+.|+.+.++.++..++.++..+..+++|.+|.+++++|. ++|+..+|.++|+|++++|+..+.|+++|+
T Consensus         3 ~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~   81 (241)
T PF00891_consen    3 GDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMA   81 (241)
T ss_dssp             TEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred             CCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence            5799999999999888655678887777677888999999999999999 899999999999999999999999999999


Q ss_pred             cCCcccH-HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCCCC
Q 021707          142 GVSVPFM-TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAA  220 (309)
Q Consensus       142 ~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p~~  220 (309)
                      ..+.... +.+...++ |++..+|||||||+|.++.+++++||+++ ++++|+|++++.+++.+||++++||+|+++|.+
T Consensus        82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~  159 (241)
T PF00891_consen   82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLR-ATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA  159 (241)
T ss_dssp             HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSE-EEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred             hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCc-ceeeccHhhhhccccccccccccccHHhhhccc
Confidence            9888766 77888887 99999999999999999999999999999 999999999999888999999999999889999


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCC--cEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCccccee
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAG--GKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYF  295 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pg--G~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~~  295 (309)
                      |+|+++++||+|+|+++++||++++++|+||  |+|+|.|.++++++...........+||+||+  +.+|++||..
T Consensus       160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~--~~~G~~rt~~  234 (241)
T PF00891_consen  160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLV--LTGGKERTEE  234 (241)
T ss_dssp             SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHH--HHSSS-EEHH
T ss_pred             cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHH--hcCCCCcCHH
Confidence            9999999999999999999999999999999  99999999999987633221122689999999  5669999964

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=7.8e-41  Score=301.49  Aligned_cols=287  Identities=34%  Similarity=0.567  Sum_probs=250.7

Q ss_pred             cchhhhhhhhhhcCCCCCCHHHHHHHhC-cCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCC
Q 021707            3 DNECRDGRKKVRLANTPLSVSQILTCIL-PSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGL   81 (309)
Q Consensus         3 ~~~~~~g~~~~~l~~~~~t~~eLA~~~~-~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~   81 (309)
                      +++|++|+|+.+-..++  ..|+|..++ |.+..++-.+.|+||.|++.++++....+ .. .|+++|+++++.+..+..
T Consensus        24 k~A~eL~v~d~l~~~~~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~-~~-~Y~~~~~~~~~l~~~~~~   99 (342)
T KOG3178|consen   24 KAACELGVFDILANAGS--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG-GE-VYSATPVCKYFLKDSGGG   99 (342)
T ss_pred             HHHHHcChHHHHHhCCC--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec-ce-eeeccchhhhheecCCCC
Confidence            47899999998866554  888888884 45567789999999999999999987632 12 899999999988765557


Q ss_pred             ChHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCCc
Q 021707           82 SYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGV  161 (309)
Q Consensus        82 ~~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~  161 (309)
                      ++..+++..++...++.|..|.++++.+. .+|..++|+..++|...++.....|+++|...+..+...+++.+..|+..
T Consensus       100 S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v  178 (342)
T KOG3178|consen  100 SLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGV  178 (342)
T ss_pred             chhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccC
Confidence            88888888888889999999999999998 68999999889999988888889999999998888888888887667788


Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-CCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHHH
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-PGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLI  240 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~i  240 (309)
                      ...||||||.|..+..++.+||+++ ++.+|+|.+++.++.. +.|+.+.||+|++.|.+|+|++.|+||||+|++|+++
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik-~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvki  257 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIK-GINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKI  257 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCc-eeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHHH
Confidence            9999999999999999999999999 9999999999999988 8999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCcEEEEeccccCC-CCCchhhhhhhhcccHhhhcccccCCcccceee
Q 021707          241 MENCYKALLAGGKLIACEPVLLD-DSNESQRTRALLEGDIFVMTIYRAKDDNSFYFF  296 (309)
Q Consensus       241 L~~~~~aL~pgG~l~i~e~~~~~-~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~~~  296 (309)
                      |++|+++|+|||+|++.|.+.|+ +....-.....+.+|+.||+ .+.+|++||...
T Consensus       258 LknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~-~~~~Gkert~~e  313 (342)
T KOG3178|consen  258 LKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLT-QTSGGKERTLKE  313 (342)
T ss_pred             HHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHH-HhccceeccHHH
Confidence            99999999999999999999996 22211123456789999999 578899999754

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=100.00  E-value=7.7e-36  Score=274.15  Aligned_cols=242  Identities=18%  Similarity=0.235  Sum_probs=188.6

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCCC-
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLS-   82 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~~-   82 (309)
                      +.|++|+|+.+ .++|.|++|||+++    |++++.++|||++|+++|++++.     ++.|++|+.++.++.+.++.+ 
T Consensus         9 aa~~Lglfd~L-~~gp~t~~eLA~~~----~~~~~~~~~lL~~L~~lgll~~~-----~~~y~~t~~~~~~l~~~~~~~~   78 (306)
T TIGR02716         9 AAIELDLFSHM-AEGPKDLATLAADT----GSVPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADYMFSPTPKEPN   78 (306)
T ss_pred             HHHHcCcHHHH-hcCCCCHHHHHHHc----CCChHHHHHHHHHHHhCCCeEec-----CCcEecchhHHhhccCCccchh
Confidence            46889999977 67999999999999    99999999999999999999987     579999999987776644321 


Q ss_pred             --hHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCC
Q 021707           83 --YAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKG  160 (309)
Q Consensus        83 --~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  160 (309)
                        +..++.+.. ......|.+|+++++++  ++|...++     +.+..++....|...+........+.+++.++ +++
T Consensus        79 ~~~~~~~~~~~-~~~~~~~~~l~~~~r~~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~  149 (306)
T TIGR02716        79 LHQTPVAKAMA-FLADDFYMGLSQAVRGQ--KNFKGQVP-----YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDG  149 (306)
T ss_pred             hhcCchHHHHH-HHHHHHHHhHHHHhcCC--cccccccC-----CCCCCHHHHHhHHHHHHhcchhHHHHHHHHcC-CCC
Confidence              122333221 12335789999999853  34432221     11112223233343333444445566777776 888


Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCC-CCCCceeeehhhhhcC
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNS-IPAANAIFMKWVLATW  232 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~-~p~~D~i~~~~vlh~~  232 (309)
                      ..+|||||||+|.++..+++++|+++ ++++|+|.+++.++++       +||+++++|+++. +|.+|+|++++++|+|
T Consensus       150 ~~~vlDiG~G~G~~~~~~~~~~p~~~-~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~  228 (306)
T TIGR02716       150 VKKMIDVGGGIGDISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSA  228 (306)
T ss_pred             CCEEEEeCCchhHHHHHHHHHCCCCE-EEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcC
Confidence            89999999999999999999999999 9999999998877542       6899999999964 6767999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          233 TDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      +++++.++|++++++|+|||+++|.|.+++++.
T Consensus       229 ~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~  261 (306)
T TIGR02716       229 NEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE  261 (306)
T ss_pred             ChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC
Confidence            999999999999999999999999999887754

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.62  E-value=2.9e-15  Score=131.36  Aligned_cols=114  Identities=20%  Similarity=0.281  Sum_probs=97.6

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA-  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~-  219 (309)
                      +.+++... ..++.+|||||||||.++..+++..+..+ ++++|. +.|++.++++      ..|+|+.+|+.+. +|. 
T Consensus        41 ~~~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~  118 (238)
T COG2226          41 RALISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDN  118 (238)
T ss_pred             HHHHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCce-EEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCC
Confidence            33444443 33678999999999999999999999888 999999 7899998764      2399999999874 776 


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCC
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSN  266 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~  266 (309)
                       .|+|.+++.||+++|.+  +.|++++|+|+|||++++.|+..|+.+.
T Consensus       119 sFD~vt~~fglrnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~  164 (238)
T COG2226         119 SFDAVTISFGLRNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPV  164 (238)
T ss_pred             ccCEEEeeehhhcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchh
Confidence             39999999999999874  9999999999999999999999998754

>PRK06922 hypothetical protein; Provisional

Probab=99.61  E-value=5.1e-15  Score=144.96  Aligned_cols=144  Identities=17%  Similarity=0.223  Sum_probs=113.2

Q ss_pred             CChhhhhhcCchHHHHHHHHhhcCCcc--cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhH
Q 021707          120 EPAYSYYGKMPEMNGLMRRAISGVSVP--FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEV  196 (309)
Q Consensus       120 ~~~~~~~~~~~~~~~~f~~~m~~~~~~--~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~  196 (309)
                      ..+|+++..+++..++|...|......  ........++ +.++.+|||||||+|.++..+++.+|+.+ ++++|+ +.+
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~k-VtGIDIS~~M  454 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKR-IYGIDISENV  454 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCE-EEEEECCHHH
Confidence            568899888888888888777653332  1222233444 66678999999999999999999999999 999999 567


Q ss_pred             HhhCCCC-----CCceEEeCCCCCC---CCC--CceeeehhhhhcC-----------ChhHHHHHHHHHHHhcCCCcEEE
Q 021707          197 VGEAPSI-----PGVTHIGGDMFNS---IPA--ANAIFMKWVLATW-----------TDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       197 ~~~a~~~-----~ri~~~~~d~~~~---~p~--~D~i~~~~vlh~~-----------~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      ++.++++     .+++++++|..+.   ++.  .|+|+++.++|+|           ++++..++|++++++|+|||+++
T Consensus       455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLI  534 (677)
T PRK06922        455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRII  534 (677)
T ss_pred             HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEE
Confidence            7776542     4688899998652   333  4999999999976           34678899999999999999999


Q ss_pred             EeccccCCCC
Q 021707          256 ACEPVLLDDS  265 (309)
Q Consensus       256 i~e~~~~~~~  265 (309)
                      |.|.+.++++
T Consensus       535 I~D~v~~E~~  544 (677)
T PRK06922        535 IRDGIMTEDK  544 (677)
T ss_pred             EEeCccCCch
Confidence            9999888764

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.59  E-value=1.1e-14  Score=129.82  Aligned_cols=107  Identities=21%  Similarity=0.341  Sum_probs=92.3

Q ss_pred             CCcceEEEecCCccHHHHHHHH--hcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCCCceeeehh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQ--KHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPAANAIFMKW  227 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~--~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~~D~i~~~~  227 (309)
                      ....+|||||||+|..+..+++  .+|+.+ ++++|. +.+++.++++       .+++++++|+.+. .+..|+|++..
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~-v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~  133 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  133 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhh
Confidence            4567999999999999999988  468899 999998 8888887652       4899999999764 44569999999


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCC
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSN  266 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~  266 (309)
                      ++|++++++..+++++++++|+|||.+++.|.+..++..
T Consensus       134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~  172 (247)
T PRK15451        134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAK  172 (247)
T ss_pred             HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcch
Confidence            999999888889999999999999999999988776543

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.59  E-value=4.1e-15  Score=115.87  Aligned_cols=97  Identities=21%  Similarity=0.293  Sum_probs=81.8

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCC-CCC-CC-CCceeeehh-h
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDM-FNS-IP-AANAIFMKW-V  228 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~-~~~-~p-~~D~i~~~~-v  228 (309)
                      ..+|||||||+|.++..+++.+|+.+ ++++|. |.+++.+++       .+||+++.+|+ ... .+ +.|+|++.. .
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            57899999999999999999999999 999998 777776654       38999999999 333 33 359999998 6


Q ss_pred             hhcCCh-hHHHHHHHHHHHhcCCCcEEEEec
Q 021707          229 LATWTD-DECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       229 lh~~~d-~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +|++.+ ++..++|+++++.|+|||+++|.+
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            665543 578899999999999999999875

...

>TIGR00740 methyltransferase, putative

Probab=99.55  E-value=2.1e-14  Score=127.43  Aligned_cols=106  Identities=17%  Similarity=0.213  Sum_probs=92.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHhc--CCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCCCceeeehh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKH--HFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPAANAIFMKW  227 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~~D~i~~~~  227 (309)
                      ....+|||||||+|.++..+++.+  |+.+ ++++|+ +.+++.++++       .+++++.+|+.+. .+..|++++.+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~-v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~  130 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  130 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeec
Confidence            355789999999999999999874  7889 999999 7888777542       4789999999764 55579999999


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      ++|++++++..++|++++++|+|||.+++.|.+.+++.
T Consensus       131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~  168 (239)
T TIGR00740       131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDT  168 (239)
T ss_pred             chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCH
Confidence            99999988888999999999999999999999887754

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.54  E-value=6.4e-15  Score=129.93  Aligned_cols=112  Identities=19%  Similarity=0.315  Sum_probs=83.7

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~  219 (309)
                      ..+++... ...+.+|||||||+|.++..+++.. |+.+ ++++|+ +.|++.++++      .+|+++.+|..+. +|.
T Consensus        37 ~~~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~-v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d  114 (233)
T PF01209_consen   37 RKLIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGK-VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPD  114 (233)
T ss_dssp             SHHHHHHT---S--EEEEET-TTSHHHHHHGGGSS---E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-T
T ss_pred             HHHHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccE-EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCC
Confidence            34455443 5567899999999999999999875 6678 999998 7899888752      5899999999764 665


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                        .|+|++++.+|+++|.  .+.|++++++|||||+++|+|...|+.
T Consensus       115 ~sfD~v~~~fglrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~  159 (233)
T PF01209_consen  115 NSFDAVTCSFGLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRN  159 (233)
T ss_dssp             T-EEEEEEES-GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SS
T ss_pred             CceeEEEHHhhHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCC
Confidence              3999999999999986  479999999999999999999998886

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.53  E-value=7.3e-14  Score=125.09  Aligned_cols=106  Identities=19%  Similarity=0.233  Sum_probs=90.4

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCC--Cceee
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPA--ANAIF  224 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~--~D~i~  224 (309)
                      ...+++.+. .....+|||||||+|.++..+++++|+.+ ++++|. +.+++.+++. +++++.+|+.+..+.  .|+|+
T Consensus        18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~-v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~   94 (255)
T PRK14103         18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAV-IEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVV   94 (255)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEE
Confidence            356777775 66778999999999999999999999999 999999 7888888653 799999998654332  59999


Q ss_pred             ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      ++.++|++++.  .++|++++++|+|||++++..
T Consensus        95 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         95 SNAALQWVPEH--ADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             EehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEc
Confidence            99999999876  589999999999999999874

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.51  E-value=2.2e-13  Score=122.47  Aligned_cols=104  Identities=21%  Similarity=0.202  Sum_probs=88.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC---------CCceEEeCCCCCC-CCC--Ccee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI---------PGVTHIGGDMFNS-IPA--ANAI  223 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~---------~ri~~~~~d~~~~-~p~--~D~i  223 (309)
                      .....+|||||||+|.++..+++.+ |+.+ ++++|. +.|++.++++         ++++++.+|+.+. ++.  .|+|
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~-V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V  149 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGK-VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI  149 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence            4556799999999999999999875 6678 999999 7788877532         4799999998763 554  3999


Q ss_pred             eehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          224 FMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       224 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      ++.+++|++++.  .++|++++++|+|||++++.|...++.
T Consensus       150 ~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~  188 (261)
T PLN02233        150 TMGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQ  188 (261)
T ss_pred             EEecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence            999999999876  589999999999999999999887664

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.48  E-value=2.3e-13  Score=117.32  Aligned_cols=112  Identities=14%  Similarity=0.118  Sum_probs=89.9

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~  219 (309)
                      .+.+++.++ .....+|||+|||+|.++..++++  ..+ ++++|. +.+++.+++.      .++++...|+.+. ++.
T Consensus        19 ~~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~-V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~   94 (197)
T PRK11207         19 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFD-VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDG   94 (197)
T ss_pred             hHHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCE-EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCC
Confidence            355666665 555689999999999999999986  457 999999 6677766532      5688999998764 444


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                       .|+|++..++|++++++..+++++++++|+|||++++.+.+.++
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~  139 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTA  139 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCC
Confidence             49999999999999888899999999999999998777655443

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.48  E-value=3e-13  Score=121.69  Aligned_cols=114  Identities=18%  Similarity=0.264  Sum_probs=94.6

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC--
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA--  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~--  219 (309)
                      ...+++.++ ..+..+|||||||+|..+..+++.+ ..+ ++++|+ +.+++.+++    .++++++.+|+.+. +|.  
T Consensus        41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~-v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~  117 (263)
T PTZ00098         41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAH-VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT  117 (263)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCE-EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence            355677775 7778899999999999999998775 668 999998 667776654    36899999999764 554  


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .|+|++..++++++.++..++|+++++.|+|||++++.|......
T Consensus       118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~  162 (263)
T PTZ00098        118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKI  162 (263)
T ss_pred             eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccc
Confidence            499999999988987677899999999999999999999876653

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.46  E-value=2.7e-12  Score=115.47  Aligned_cols=102  Identities=17%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             CCCcceEEEecCCccH----HHHHHHHhcC-----CCceEEEeec-hhHHhhCCCC------------------------
Q 021707          158 FKGVKRLVDVGGSAGD----CLRMILQKHH-----FICEGINFDL-PEVVGEAPSI------------------------  203 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~~D~-p~~~~~a~~~------------------------  203 (309)
                      ..+..+|+|+|||+|.    +++.+++.+|     +.+ +++.|+ +.+++.|++.                        
T Consensus        97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~  175 (264)
T smart00138       97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED  175 (264)
T ss_pred             CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence            3445799999999996    5667777665     467 999999 7788877652                        


Q ss_pred             ---------CCceEEeCCCCCCCC-C--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          204 ---------PGVTHIGGDMFNSIP-A--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       204 ---------~ri~~~~~d~~~~~p-~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                               .+|+|..+|+.++.+ .  .|+|++++++|+|++++..+++++++++|+|||++++...-
T Consensus       176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E  244 (264)
T smart00138      176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE  244 (264)
T ss_pred             eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence                     378999999988633 3  49999999999999888899999999999999999987543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.44  E-value=8.8e-13  Score=118.20  Aligned_cols=106  Identities=20%  Similarity=0.290  Sum_probs=90.7

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCCCCC--Ccee
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNSIPA--ANAI  223 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~~p~--~D~i  223 (309)
                      ...++..++ ..+..+|||||||+|.++..+++.+|+.+ ++++|. +.+++.++++ ++++++.+|+.+..+.  .|+|
T Consensus        20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v   97 (258)
T PRK01683         20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAAR-ITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI   97 (258)
T ss_pred             HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence            456777775 66778999999999999999999999999 999999 7788888764 7899999998764332  4999


Q ss_pred             eehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          224 FMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       224 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      +++.++|++++.  .++|++++++|+|||++++.
T Consensus        98 ~~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         98 FANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             EEccChhhCCCH--HHHHHHHHHhcCCCcEEEEE
Confidence            999999988876  58999999999999999886

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.43  E-value=1.6e-12  Score=114.55  Aligned_cols=111  Identities=14%  Similarity=0.191  Sum_probs=90.9

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC-CCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS-IPA  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~-~p~  219 (309)
                      ..+++.++ .....+|||+|||+|.++..+++.+ |+.+ ++++|. +.+++.+++      .++++++.+|..+. ++.
T Consensus        35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  112 (231)
T TIGR02752        35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGH-VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDD  112 (231)
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCC
Confidence            44566664 6667899999999999999999886 6778 999999 677766653      26899999998764 444


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                        .|+|++.+++|++++.  .++|+++.+.|+|||++++.|...+.
T Consensus       113 ~~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~  156 (231)
T TIGR02752       113 NSFDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPT  156 (231)
T ss_pred             CCccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCC
Confidence              3999999999998876  48999999999999999999876544

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.42  E-value=1.2e-12  Score=113.55  Aligned_cols=110  Identities=17%  Similarity=0.238  Sum_probs=92.8

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC------CceEEEeec-hhHHhhCCCC---------CCceEEeCCCC
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF------ICEGINFDL-PEVVGEAPSI---------PGVTHIGGDMF  214 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~------~~~~~~~D~-p~~~~~a~~~---------~ri~~~~~d~~  214 (309)
                      .+..+. -.+..++|||+||+|..+..++++-+.      .+ ++++|. |++++.++++         .++.|+++|..
T Consensus        92 ~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~-V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE  169 (296)
T KOG1540|consen   92 FVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK-VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAE  169 (296)
T ss_pred             hhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCce-EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcc
Confidence            334443 344689999999999999999999887      56 999998 8888877542         56999999997


Q ss_pred             CC-CCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          215 NS-IPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       215 ~~-~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +. +|.  .|.|.+.+-+.+|++.+  +.|++++|+|||||++.+.|+..-++
T Consensus       170 ~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKpGGrf~cLeFskv~~  220 (296)
T KOG1540|consen  170 DLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKPGGRFSCLEFSKVEN  220 (296)
T ss_pred             cCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCCCcEEEEEEcccccc
Confidence            64 776  39999999999999885  99999999999999999999987775

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.42  E-value=3.5e-13  Score=111.15  Aligned_cols=97  Identities=26%  Similarity=0.405  Sum_probs=84.9

Q ss_pred             CcceEEEecCCccHHHHHHH-HhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCC----C-Cceeeeh
Q 021707          160 GVKRLVDVGGSAGDCLRMIL-QKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIP----A-ANAIFMK  226 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p----~-~D~i~~~  226 (309)
                      +..+|||+|||+|.++..++ +.+|..+ ++++|. +.+++.+++      .+++++..+|+.+ ++    . .|+|++.
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~-l~~~~~~~~D~I~~~   80 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIED-LPQELEEKFDIIISN   80 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTC-GCGCSSTTEEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhc-cccccCCCeeEEEEc
Confidence            46799999999999999999 5688999 999998 778888765      2689999999988 33    3 5999999


Q ss_pred             hhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          227 WVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      .++|++++.+  .+|+++++.|+|+|.+++.+..
T Consensus        81 ~~l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   81 GVLHHFPDPE--KVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             STGGGTSHHH--HHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CchhhccCHH--HHHHHHHHHcCCCcEEEEEECC
Confidence            9999999874  8999999999999999999988

...

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.41  E-value=4.8e-13  Score=100.34  Aligned_cols=88  Identities=22%  Similarity=0.389  Sum_probs=73.2

Q ss_pred             EEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC---CCCceEEeCCCCCC-CCC-C-ceeeehhhhhcCChhHH
Q 021707          165 VDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS---IPGVTHIGGDMFNS-IPA-A-NAIFMKWVLATWTDDEC  237 (309)
Q Consensus       165 lDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~---~~ri~~~~~d~~~~-~p~-~-D~i~~~~vlh~~~d~~~  237 (309)
                      ||+|||+|..+..++++ +..+ ++++|. +.+++.+++   ..+++++.+|+.+. +|. . |+|++.+++|+++  +.
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~-v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~~   76 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGAS-VTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--DP   76 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCE-EEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--HH
T ss_pred             CEecCcCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--CH
Confidence            79999999999999999 8888 999998 566776654   36677999998775 554 3 9999999999994  44


Q ss_pred             HHHHHHHHHhcCCCcEEEE
Q 021707          238 KLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       238 ~~iL~~~~~aL~pgG~l~i  256 (309)
                      .+++++++++|||||+++|
T Consensus        77 ~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   77 EAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHcCcCeEEeC
Confidence            7999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.40  E-value=8.4e-14  Score=106.32  Aligned_cols=87  Identities=24%  Similarity=0.350  Sum_probs=60.0

Q ss_pred             EEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------C---CceEEeCCCCCCCC--CCceeeehhhhhcC
Q 021707          165 VDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------P---GVTHIGGDMFNSIP--AANAIFMKWVLATW  232 (309)
Q Consensus       165 lDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~---ri~~~~~d~~~~~p--~~D~i~~~~vlh~~  232 (309)
                      ||||||+|.++..+++.+|..+ ++++|. +.+++.++++      .   ++++...|.++..+  ..|+|++.+++|++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~-~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDAR-YTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEE-EEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            7999999999999999999999 999998 7888888764      2   34555555554433  35999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEE
Q 021707          233 TDDECKLIMENCYKALLAGGKL  254 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l  254 (309)
                      ++  ...+|+++++.|+|||+|
T Consensus        80 ~~--~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   80 ED--IEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             S---HHHHHHHHTTT-TSS-EE
T ss_pred             hh--HHHHHHHHHHHcCCCCCC
Confidence            44  469999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.39  E-value=2.9e-12  Score=110.93  Aligned_cols=103  Identities=16%  Similarity=0.240  Sum_probs=89.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCCCCC--CceeeehhhhhcCC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNSIPA--ANAIFMKWVLATWT  233 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~~p~--~D~i~~~~vlh~~~  233 (309)
                      ..+..+|||||||+|.++..+++..|..+ ++++|. +.+++.++++ +++++..+|+.++++.  .|+|++..+||+++
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~-v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~  119 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKH-IYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHIN  119 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCC
Confidence            34567899999999999999999889899 999998 7799988774 7789999999886554  39999999999998


Q ss_pred             hhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          234 DDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       234 d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +++..++++++++++  ++.++|.|...+.
T Consensus       120 p~~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587       120 PDNLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             HHHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            888899999999997  4789999887654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02244 tocopherol O-methyltransferase

Probab=99.39  E-value=2.3e-12  Score=120.10  Aligned_cols=99  Identities=20%  Similarity=0.209  Sum_probs=83.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CCC--Cceeeehh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IPA--ANAIFMKW  227 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p~--~D~i~~~~  227 (309)
                      ....+|||||||+|.++..+++++ +.+ ++++|+ +.+++.+++       .++++++.+|+.+. ++.  .|+|++..
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~  194 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GAN-VKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSME  194 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECC
Confidence            456799999999999999999988 678 999998 666766543       15799999999764 444  49999999


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      ++|++++.  .++|++++++|+|||+++|.+...
T Consensus       195 ~~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~  226 (340)
T PLN02244        195 SGEHMPDK--RKFVQELARVAAPGGRIIIVTWCH  226 (340)
T ss_pred             chhccCCH--HHHHHHHHHHcCCCcEEEEEEecc
Confidence            99999876  589999999999999999988654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.38  E-value=2.6e-12  Score=110.50  Aligned_cols=109  Identities=13%  Similarity=0.084  Sum_probs=85.1

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-~  220 (309)
                      ..+++.++ .....+|||+|||+|..+..++++  +.+ ++++|. +.+++.+++.     -++++...|+... .++ .
T Consensus        20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f   95 (195)
T TIGR00477        20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYD-VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY   95 (195)
T ss_pred             HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence            34555654 445679999999999999999986  467 999998 6677765432     2467777787543 334 5


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      |+|+++.++|++++++...++++++++|+|||++++.+...
T Consensus        96 D~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~  136 (195)
T TIGR00477        96 DFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMD  136 (195)
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence            99999999999988888899999999999999988776544

Part of a tellurite-reducing operon tehA and tehB

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.36  E-value=3.5e-12  Score=108.19  Aligned_cols=120  Identities=19%  Similarity=0.264  Sum_probs=100.7

Q ss_pred             HHHHhhcCCcccHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCC
Q 021707          136 MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDM  213 (309)
Q Consensus       136 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~  213 (309)
                      |.++-...+.+. .+++..++ .....+|+|+|||+|.....|++++|+.. ++++|. +.|++.|+.. ++++|..+|+
T Consensus         8 Yl~F~~eRtRPa-~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~-i~GiDsS~~Mla~Aa~rlp~~~f~~aDl   84 (257)
T COG4106           8 YLQFEDERTRPA-RDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAV-ITGIDSSPAMLAKAAQRLPDATFEEADL   84 (257)
T ss_pred             HHHHHHhccCcH-HHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCe-EeeccCCHHHHHHHHHhCCCCceecccH
Confidence            444444444443 56777776 77889999999999999999999999999 999998 8899998765 9999999999


Q ss_pred             CCCCCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          214 FNSIPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       214 ~~~~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      .+-.|+  .|+++.+-+||-++|-  .++|.++...|.|||.|.+.=+-
T Consensus        85 ~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPd  131 (257)
T COG4106          85 RTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPD  131 (257)
T ss_pred             hhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCC
Confidence            776664  5999999999988876  69999999999999999887444

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.35  E-value=4.7e-12  Score=117.16  Aligned_cols=109  Identities=23%  Similarity=0.302  Sum_probs=89.3

Q ss_pred             HHhhcCCCC-CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCCC-CCC--Cce
Q 021707          151 VLDSYNGFK-GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFNS-IPA--ANA  222 (309)
Q Consensus       151 ~~~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~~-~p~--~D~  222 (309)
                      +++... +. ...+|||||||+|.++..+++.++..+ ++++|. +.+++.++++   .+++++.+|+.+. ++.  .|+
T Consensus       104 ~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~-VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDv  181 (340)
T PLN02490        104 ALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADR  181 (340)
T ss_pred             HHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeE
Confidence            444443 43 457999999999999999999988888 999998 6777777653   6799999998764 443  499


Q ss_pred             eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |++..++|++++.+  ++|+++++.|+|||++++.+...++
T Consensus       182 VIs~~~L~~~~d~~--~~L~e~~rvLkPGG~LvIi~~~~p~  220 (340)
T PLN02490        182 YVSAGSIEYWPDPQ--RGIKEAYRVLKIGGKACLIGPVHPT  220 (340)
T ss_pred             EEEcChhhhCCCHH--HHHHHHHHhcCCCcEEEEEEecCcc
Confidence            99999999999875  7899999999999999998766543

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.33  E-value=5.3e-12  Score=110.65  Aligned_cols=96  Identities=19%  Similarity=0.251  Sum_probs=82.4

Q ss_pred             eEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CCC-CceeeehhhhhcC
Q 021707          163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IPA-ANAIFMKWVLATW  232 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~  232 (309)
                      +|||||||+|.++..+++.+|+.+ ++++|+ +.+++.+++       .++++++.+|+.+. .+. .|+|+...++|++
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~-v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            799999999999999999999999 999998 556665543       26899999998654 444 4999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          233 TDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      ++.  ..+|+++++.|+|||++++.+...
T Consensus        81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~  107 (224)
T smart00828       81 KDK--MDLFSNISRHLKDGGHLVLADFIA  107 (224)
T ss_pred             CCH--HHHHHHHHHHcCCCCEEEEEEccc
Confidence            875  589999999999999999998764

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.33  E-value=1.9e-12  Score=99.26  Aligned_cols=88  Identities=19%  Similarity=0.319  Sum_probs=71.7

Q ss_pred             EEEecCCccHHHHHHHHhc---CCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CC--CCceeeeh-hhhh
Q 021707          164 LVDVGGSAGDCLRMILQKH---HFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IP--AANAIFMK-WVLA  230 (309)
Q Consensus       164 vlDvG~G~G~~~~~l~~~~---p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p--~~D~i~~~-~vlh  230 (309)
                      |||+|||+|..+..+++.+   |+.+ ++++|+ +.+++.+++.     .++++++.|+.+. ++  ..|+|++. .++|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~-~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~   79 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSR-VIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH   79 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SE-EEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccce-EEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence            7999999999999999997   5577 999998 7788777652     5899999999763 22  24999995 5599


Q ss_pred             cCChhHHHHHHHHHHHhcCCCc
Q 021707          231 TWTDDECKLIMENCYKALLAGG  252 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG  252 (309)
                      ++++++..++|+++++.|+|||
T Consensus        80 ~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   80 HLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999997

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.32  E-value=9.5e-12  Score=121.14  Aligned_cols=110  Identities=17%  Similarity=0.230  Sum_probs=90.6

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCC-CCC--
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNS-IPA--  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~-~p~--  219 (309)
                      ..+++.+. ..+..+|||||||+|..+..+++.+ +.+ ++++|+ +.+++.+++     ..+++++.+|+++. +|.  
T Consensus       256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~  332 (475)
T PLN02336        256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVH-VVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNS  332 (475)
T ss_pred             HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCC
Confidence            34556654 6667899999999999999988876 778 999999 567776643     25799999999875 554  


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      .|+|++..+++++++.  .++|++++++|+|||++++.+.....
T Consensus       333 fD~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~  374 (475)
T PLN02336        333 FDVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSP  374 (475)
T ss_pred             EEEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCC
Confidence            4999999999999876  48999999999999999999987654

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.29  E-value=1.7e-11  Score=111.68  Aligned_cols=109  Identities=15%  Similarity=0.086  Sum_probs=85.6

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-Cc
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-AN  221 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-~D  221 (309)
                      .++..++ ..+..+|||||||+|..+..+++.  +.+ ++++|. +.+++.+++.     -++++...|+.+. +++ .|
T Consensus       111 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~-V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD  186 (287)
T PRK12335        111 EVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFD-VTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD  186 (287)
T ss_pred             HHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence            3445443 334569999999999999999886  467 999999 5666665432     3688888888664 444 49


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      +|++..++|++++++...++++++++|+|||++++++....
T Consensus       187 ~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~  227 (287)
T PRK12335        187 FILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDT  227 (287)
T ss_pred             EEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            99999999999988889999999999999999887765433

>PRK08317 hypothetical protein; Provisional

Probab=99.29  E-value=2.6e-11  Score=106.55  Aligned_cols=108  Identities=19%  Similarity=0.243  Sum_probs=88.4

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCC-CCC--
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNS-IPA--  219 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~-~p~--  219 (309)
                      .+++.++ .....+|||+|||+|.++..+++.+ |..+ ++++|. +..++.+++     ..++++..+|+.+. ++.  
T Consensus        10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~   87 (241)
T PRK08317         10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGR-VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGS   87 (241)
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCC
Confidence            3455554 6677899999999999999999998 7788 999998 566665543     26799999998753 443  


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      .|+|++.+++|++++.  .++++++++.|+|||++++.++..
T Consensus        88 ~D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~  127 (241)
T PRK08317         88 FDAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDW  127 (241)
T ss_pred             ceEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCC
Confidence            4999999999999876  578999999999999999998643

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.28  E-value=2e-11  Score=109.32  Aligned_cols=102  Identities=21%  Similarity=0.200  Sum_probs=82.0

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC--CC-C
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS--IP-A  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~--~p-~  219 (309)
                      +++.++  +...+|||||||+|.++..+++.  ..+ ++++|. +.+++.++++       ++++++.+|+.+.  .+ .
T Consensus        37 ~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~-v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~  111 (255)
T PRK11036         37 LLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQ-VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET  111 (255)
T ss_pred             HHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence            444442  34579999999999999999987  456 999999 7788877642       5789999988643  22 3


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                       .|+|++..++|++++.  .++|++++++|+|||++++...
T Consensus       112 ~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~  150 (255)
T PRK11036        112 PVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFY  150 (255)
T ss_pred             CCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEE
Confidence             4999999999999876  4899999999999999988643

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.27  E-value=2.5e-11  Score=112.19  Aligned_cols=111  Identities=15%  Similarity=0.083  Sum_probs=84.4

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhC-------CCCCCceEEeCCCCCC-CCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEA-------PSIPGVTHIGGDMFNS-IPA  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a-------~~~~ri~~~~~d~~~~-~p~  219 (309)
                      ..++..++ .-.+.+|||||||+|.++..+++.++. + ++++|.+ .++..+       ....+++++.+|+.+. .+.
T Consensus       112 ~~l~~~l~-~l~g~~VLDIGCG~G~~~~~la~~g~~-~-V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~  188 (322)
T PRK15068        112 DRVLPHLS-PLKGRTVLDVGCGNGYHMWRMLGAGAK-L-VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK  188 (322)
T ss_pred             HHHHHhhC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence            34455554 334579999999999999999998765 5 9999983 344321       1135899999998653 333


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                       .|+|++..++|+..+.  ..+|+++++.|+|||.+++.+.+.+.+
T Consensus       189 ~FD~V~s~~vl~H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~  232 (322)
T PRK15068        189 AFDTVFSMGVLYHRRSP--LDHLKQLKDQLVPGGELVLETLVIDGD  232 (322)
T ss_pred             CcCEEEECChhhccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCC
Confidence             4999999999998876  479999999999999998877665544

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.27  E-value=3.4e-11  Score=117.21  Aligned_cols=113  Identities=21%  Similarity=0.304  Sum_probs=92.1

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCC---CCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFN---SIPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~---~~p~  219 (309)
                      ...+++.++ .....+|||||||+|.++..+++.+.  + ++++|. +.+++.+++    .++++++.+|+.+   ++|.
T Consensus        26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~-v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~  101 (475)
T PLN02336         26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--Q-VIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD  101 (475)
T ss_pred             hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--E-EEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence            455666664 44567999999999999999998853  5 999998 667766542    3679999999864   2443


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                        .|+|++..++|++++++..++|+++++.|+|||++++.|.....+
T Consensus       102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~  148 (475)
T PLN02336        102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQS  148 (475)
T ss_pred             CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCC
Confidence              499999999999999888999999999999999999999876654

>PLN03075 nicotianamine synthase; Provisional

Probab=99.27  E-value=2.1e-11  Score=110.25  Aligned_cols=98  Identities=15%  Similarity=0.155  Sum_probs=79.1

Q ss_pred             CCcceEEEecCCccHH--HHHHHHhcCCCceEEEeec-hhHHhhCCC--------CCCceEEeCCCCCCCC---CCceee
Q 021707          159 KGVKRLVDVGGSAGDC--LRMILQKHHFICEGINFDL-PEVVGEAPS--------IPGVTHIGGDMFNSIP---AANAIF  224 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~--~~~l~~~~p~~~~~~~~D~-p~~~~~a~~--------~~ri~~~~~d~~~~~p---~~D~i~  224 (309)
                      ..+.+|+|||||.|-+  ...+++.+|+.+ ++++|. +++++.|++        .+|++|+.+|..+..+   +.|+|+
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence            3678999999998844  333445789999 999999 667766653        2689999999987532   359999


Q ss_pred             ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +. ++|+|..++-.++|++++++|+|||.+++--
T Consensus       201 ~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        201 LA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             Ee-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            99 9999976666899999999999999998874

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.27  E-value=5.4e-11  Score=106.18  Aligned_cols=108  Identities=14%  Similarity=0.174  Sum_probs=85.3

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC--Cce
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA--ANA  222 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~--~D~  222 (309)
                      ...+++.++ .....+|||+|||+|.++..+.+.  ..+ ++++|+ +.+++.+++. ..+.++.+|+.+. ++.  .|+
T Consensus        31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~  106 (251)
T PRK10258         31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQ-VTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL  106 (251)
T ss_pred             HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence            344556664 445679999999999999888764  456 999999 7888888764 4568889998663 444  499


Q ss_pred             eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      |+.+.++|..++.  .++|++++++|+|||.+++..+..
T Consensus       107 V~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        107 AWSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             EEECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCC
Confidence            9999999877665  589999999999999999986553

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.26  E-value=4.9e-11  Score=105.02  Aligned_cols=112  Identities=15%  Similarity=0.207  Sum_probs=90.1

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IP  218 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p  218 (309)
                      ..++..+. .....+|+|||||+|.++..+++.+| +.+ ++++|. +.+++.++++       .+++++.+|+.+. .+
T Consensus        41 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  118 (239)
T PRK00216         41 RKTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGE-VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFP  118 (239)
T ss_pred             HHHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCC
Confidence            34555554 44567999999999999999999998 678 999998 5666665442       5789999999764 33


Q ss_pred             C--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          219 A--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       219 ~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .  .|+|++++++|++++.  ..+|+++++.|+|||++++.|...+..
T Consensus       119 ~~~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~  164 (239)
T PRK00216        119 DNSFDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTN  164 (239)
T ss_pred             CCCccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCc
Confidence            2  4999999999999876  588999999999999999998876654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.26  E-value=3.3e-11  Score=113.05  Aligned_cols=108  Identities=15%  Similarity=0.124  Sum_probs=86.3

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---------CCceEEeCCCCCCCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---------PGVTHIGGDMFNSIP  218 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---------~ri~~~~~d~~~~~p  218 (309)
                      .-+++.++ .....+|||+|||+|..+..+++++|+.+ ++++|. +.+++.++++         .+++++..|.++..+
T Consensus       218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~-V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~  295 (378)
T PRK15001        218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE  295 (378)
T ss_pred             HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence            34566665 33346999999999999999999999999 999999 4666666532         378999999987654


Q ss_pred             C--Cceeeehhhhh---cCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          219 A--ANAIFMKWVLA---TWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       219 ~--~D~i~~~~vlh---~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      .  .|+|+++-.+|   .+++..+.++++.++++|+|||.++|+-
T Consensus       296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            3  49999975554   4566677899999999999999999983

>TIGR00452 methyltransferase, putative

Probab=99.25  E-value=4.3e-11  Score=109.82  Aligned_cols=111  Identities=15%  Similarity=0.055  Sum_probs=84.6

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhC-------CCCCCceEEeCCCCCCC-C-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEA-------PSIPGVTHIGGDMFNSI-P-  218 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a-------~~~~ri~~~~~d~~~~~-p-  218 (309)
                      ..++..+. ..++.+|||||||+|.++..++..++. . ++++|. +.++..+       ....++++..+++.+.. . 
T Consensus       111 ~~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~-v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~  187 (314)
T TIGR00452       111 DRVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-S-LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELY  187 (314)
T ss_pred             HHHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCC
Confidence            44555554 444679999999999999999988764 6 999998 4454432       12367888888875432 2 


Q ss_pred             CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          219 AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       219 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      ..|+|++..++|++++.  ...|++++++|+|||.|++.+.+.+.+
T Consensus       188 ~FD~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~  231 (314)
T TIGR00452       188 AFDTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGD  231 (314)
T ss_pred             CcCEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCc
Confidence            24999999999999877  489999999999999999987766543

Known examples to date are restricted to the proteobacteria.

>PRK06202 hypothetical protein; Provisional

Probab=99.25  E-value=6.9e-11  Score=104.35  Aligned_cols=101  Identities=16%  Similarity=0.096  Sum_probs=79.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHh----cCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCC--CCCC-Cceeeehh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQK----HHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFN--SIPA-ANAIFMKW  227 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~--~~p~-~D~i~~~~  227 (309)
                      .+..+|||||||+|.++..+++.    .|+.+ ++++|+ +.+++.+++.   .++++..++...  ..++ .|+|+++.
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~  137 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH  137 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence            45679999999999999888764    45678 999999 7888887654   456666654422  2223 49999999


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ++|++++++..++|+++++.++  |.+++.|...+
T Consensus       138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             eeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence            9999999888899999999998  67777776654

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.25  E-value=1.8e-11  Score=112.78  Aligned_cols=96  Identities=9%  Similarity=-0.011  Sum_probs=79.2

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCC--Cceeeehhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPA--ANAIFMKWV  228 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~--~D~i~~~~v  228 (309)
                      ...+|||||||+|.++..+++  ++.+ ++++|. +.+++.++++       .+++++++|+.+. .+.  .|+|++..+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~--~g~~-V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v  207 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLAR--MGAT-VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV  207 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHH--cCCE-EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence            346899999999999998886  3667 999998 6777777532       4799999987543 232  599999999


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +|++++.+  .+|+++++.|+|||.++|....
T Consensus       208 LeHv~d~~--~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        208 IEHVANPA--EFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             HHhcCCHH--HHHHHHHHHcCCCcEEEEEECC
Confidence            99999874  8999999999999999998654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.24  E-value=3.9e-11  Score=105.59  Aligned_cols=100  Identities=19%  Similarity=0.162  Sum_probs=83.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--CCceEEeCCCCCC-CCC--CceeeehhhhhcCC
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--PGVTHIGGDMFNS-IPA--ANAIFMKWVLATWT  233 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~  233 (309)
                      ...+|||||||+|.++..+++.+|..+ ++++|. +.++..+++.  ++++++.+|+.+. ++.  .|+|++.+++|+..
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~  112 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAE-FIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCD  112 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCc-EEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhcc
Confidence            347899999999999999999999999 999998 5666655543  5799999998764 333  49999999999887


Q ss_pred             hhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          234 DDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       234 d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      +.  .++|+++++.|+|||.+++.++...
T Consensus       113 ~~--~~~l~~~~~~L~~~G~l~~~~~~~~  139 (240)
T TIGR02072       113 DL--SQALSELARVLKPGGLLAFSTFGPG  139 (240)
T ss_pred             CH--HHHHHHHHHHcCCCcEEEEEeCCcc
Confidence            65  5899999999999999999865443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.24  E-value=1.3e-11  Score=104.12  Aligned_cols=102  Identities=22%  Similarity=0.318  Sum_probs=81.5

Q ss_pred             hcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCCCCC--Cceeeeh
Q 021707          154 SYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNSIPA--ANAIFMK  226 (309)
Q Consensus       154 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~~p~--~D~i~~~  226 (309)
                      .++ -....+++|+|||.|.++..|+.++-  + .+++|. +..++.+++    .++|+++..|+-+..|.  .|+|+++
T Consensus        38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~-LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S  113 (201)
T PF05401_consen   38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--R-LLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS  113 (201)
T ss_dssp             HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--E-EEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred             hcC-ccccceeEecCCCccHHHHHHHHhhC--c-eEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence            454 55678999999999999999998873  3 899998 777877764    48999999999887776  3999999


Q ss_pred             hhhhcCCh-hHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          227 WVLATWTD-DECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       227 ~vlh~~~d-~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      -++|++++ ++...+++++.++|+|||.+++...
T Consensus       114 EVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  114 EVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             S-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            99999986 6788899999999999999999876

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.23  E-value=4.6e-11  Score=102.00  Aligned_cols=103  Identities=19%  Similarity=0.254  Sum_probs=81.7

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC-Cce
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA-ANA  222 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~-~D~  222 (309)
                      ++..++ .....+|||||||+|.++..+++.+|+.+ ++++|. +.+++.++++      .+++++.+|.....+. .|+
T Consensus        23 ~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~  100 (187)
T PRK08287         23 ALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQ-VTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADA  100 (187)
T ss_pred             HHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCE
Confidence            345554 66678999999999999999999999999 999999 6777776542      5799999998655554 599


Q ss_pred             eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      |++....++     ...+++++++.|+|||++++....
T Consensus       101 v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~  133 (187)
T PRK08287        101 IFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFIL  133 (187)
T ss_pred             EEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEec
Confidence            998765543     246899999999999999886543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.22  E-value=4.8e-11  Score=107.81  Aligned_cols=103  Identities=18%  Similarity=0.285  Sum_probs=85.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC--Cceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA--ANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~--~D~i~~~  226 (309)
                      .....+|||||||+|..+..+++.. ++.+ ++++|+ +.+++.++++      ++++++.+|+.+. ++.  .|+|+..
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence            4567899999999999888777764 5667 999998 7788877652      6899999998763 444  4999999


Q ss_pred             hhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          227 WVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      .++|++++.  .+++++++++|+|||++++.+.....
T Consensus       154 ~v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~  188 (272)
T PRK11873        154 CVINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRG  188 (272)
T ss_pred             CcccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccC
Confidence            999988876  47999999999999999999887654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.20  E-value=1.2e-10  Score=101.43  Aligned_cols=112  Identities=17%  Similarity=0.159  Sum_probs=89.9

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC--
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA--  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~--  219 (309)
                      ..+++... .....+|+|+|||+|.++..+++.+|. .+ ++++|. +.+++.+++    ..+++++.+|+.+. .+.  
T Consensus        29 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  106 (223)
T TIGR01934        29 RRAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGK-VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNS  106 (223)
T ss_pred             HHHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCce-EEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCc
Confidence            34455543 446689999999999999999999987 67 999998 566666544    25799999999764 333  


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .|+|++++.+|+.++.  ..+|+++++.|+|||++++.+...+..
T Consensus       107 ~D~i~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~  149 (223)
T TIGR01934       107 FDAVTIAFGLRNVTDI--QKALREMYRVLKPGGRLVILEFSKPAN  149 (223)
T ss_pred             EEEEEEeeeeCCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCc
Confidence            4999999999988765  589999999999999999998875543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.19  E-value=5e-11  Score=107.54  Aligned_cols=114  Identities=14%  Similarity=0.060  Sum_probs=84.9

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhCC----C---CCCceEEeCCCCCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEAP----S---IPGVTHIGGDMFNSIPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a~----~---~~ri~~~~~d~~~~~p~  219 (309)
                      .+.+++.++ .+++.+|||||||-|.++..+++++ +++ ++++.++ +-.+.++    +   .+++++...|+.+.-+.
T Consensus        51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~  127 (273)
T PF02353_consen   51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCH-VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGK  127 (273)
T ss_dssp             HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCC
Confidence            456777875 8889999999999999999999999 889 9999983 3333332    2   27899999998754444


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .|.|+....+.++..+...++++++.+.|+|||++++.....++.
T Consensus       128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~  172 (273)
T PF02353_consen  128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDP  172 (273)
T ss_dssp             -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--H
T ss_pred             CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccc
Confidence            699999999999998888999999999999999999988777664

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.19  E-value=8.9e-11  Score=96.86  Aligned_cols=97  Identities=24%  Similarity=0.357  Sum_probs=74.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--CceeeehhhhhcCC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWT  233 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~  233 (309)
                      .....+|||||||.|.++..+.+...  + ++++|. +.+++.    .++.....+.... .+.  .|+|++..+||+++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~-~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~   92 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--E-VTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP   92 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--E-EEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--E-EEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence            35678999999999999999976644  7 999999 666666    2333333222222 222  49999999999999


Q ss_pred             hhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          234 DDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       234 d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +.  .++|+++++.|+|||++++.++....
T Consensus        93 d~--~~~l~~l~~~LkpgG~l~~~~~~~~~  120 (161)
T PF13489_consen   93 DP--EEFLKELSRLLKPGGYLVISDPNRDD  120 (161)
T ss_dssp             HH--HHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred             cH--HHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence            75  69999999999999999999988643

...

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.18  E-value=1.4e-10  Score=103.79  Aligned_cols=115  Identities=15%  Similarity=0.126  Sum_probs=98.7

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~  219 (309)
                      .+.+++.+. ++++.+|||||||-|.+++..+++| +++ ++++++ ++..+.+++       ..+|++.-.|+.+..+.
T Consensus        61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~  137 (283)
T COG2230          61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP  137 (283)
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence            466788886 9999999999999999999999999 999 999999 444444433       26899999999765555


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      .|-|+..-.++++..+.-...++++++.|+|||++++.....++.+
T Consensus       138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~  183 (283)
T COG2230         138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQE  183 (283)
T ss_pred             cceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcc
Confidence            7999999999999998889999999999999999999998887743

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.18  E-value=1.3e-10  Score=91.66  Aligned_cols=100  Identities=15%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC---CCC-
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS---IPA-  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~---~p~-  219 (309)
                      +++.+. .....+|+|+|||+|.++..+++++|+.+ ++++|. +.+++.+++      ..+++++.+|....   .++ 
T Consensus        11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (124)
T TIGR02469        11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE   88 (124)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence            455554 55567999999999999999999999988 999998 566666543      26789998887542   223 


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .|+|++....+     ...++++++++.|+|||++++.
T Consensus        89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        89 PDRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             CCEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence            59999876433     3458999999999999998874

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.18  E-value=2.3e-10  Score=100.13  Aligned_cols=123  Identities=12%  Similarity=0.038  Sum_probs=87.2

Q ss_pred             chHHHHHHHHhhcCCcccHHHHHhhcCC-CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----
Q 021707          130 PEMNGLMRRAISGVSVPFMTSVLDSYNG-FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----  203 (309)
Q Consensus       130 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----  203 (309)
                      +.....+...|......+...+++.+.. ..+..+|||||||+|.++..+++.  +.+ ++++|. +.++..++++    
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~-v~gvD~s~~~i~~a~~~~~~~  100 (219)
T TIGR02021        24 GDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAI-VKAVDISEQMVQMARNRAQGR  100 (219)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhc
Confidence            3333444444422222333444444421 345689999999999999999876  446 999998 7788777542    


Q ss_pred             ---CCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEE
Q 021707          204 ---PGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       204 ---~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                         .++++..+|+.+.....|+|++..+++++++++..++++++++.+++++.+.
T Consensus       101 ~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~  155 (219)
T TIGR02021       101 DVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFT  155 (219)
T ss_pred             CCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence               4899999998664433599999999999988778899999999988665444

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.17  E-value=1.9e-10  Score=108.80  Aligned_cols=111  Identities=13%  Similarity=0.023  Sum_probs=88.9

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCCCCCCCceeee
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFNSIPAANAIFM  225 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~~~p~~D~i~~  225 (309)
                      .+++.++ ...+.+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.++++   .++++...|+.+.....|+|+.
T Consensus       158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~-V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs  234 (383)
T PRK11705        158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVS-VVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS  234 (383)
T ss_pred             HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence            4555654 6677899999999999999998876 678 999998 6777766543   3578888887543223599999


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      ..++++.++.....+++++++.|+|||++++.+...+.
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~  272 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNK  272 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCC
Confidence            99999998877789999999999999999998766553

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.17  E-value=7.6e-11  Score=99.17  Aligned_cols=98  Identities=19%  Similarity=0.245  Sum_probs=79.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--Cceeeehhhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--ANAIFMKWVLA  230 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--~D~i~~~~vlh  230 (309)
                      ...+|||+|||+|..+..+++++|+.+ ++++|. +.+++.++++      ..++++..|.++..+.  .|+|+++-.+|
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~  109 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFH  109 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchh
Confidence            457899999999999999999999999 999998 6667666542      3499999999998663  49999998877


Q ss_pred             cCCh---hHHHHHHHHHHHhcCCCcEEEEec
Q 021707          231 TWTD---DECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       231 ~~~d---~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      .-.+   +-..++++.+++.|+|||+++++-
T Consensus       110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~  140 (170)
T PF05175_consen  110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI  140 (170)
T ss_dssp             TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence            6654   346789999999999999997643

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.16  E-value=2e-10  Score=106.94  Aligned_cols=109  Identities=15%  Similarity=0.159  Sum_probs=85.5

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC-Cce
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA-ANA  222 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~-~D~  222 (309)
                      .+++.++ .....+|||+|||+|.++..+++++|+.+ ++++|. +.+++.++++     -..+++.+|.++..++ .|+
T Consensus       187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~-v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl  264 (342)
T PRK09489        187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIR-LTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM  264 (342)
T ss_pred             HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence            3455554 33345899999999999999999999999 999998 5677766542     2457788898776554 499


Q ss_pred             eeehhhhhcC---ChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          223 IFMKWVLATW---TDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       223 i~~~~vlh~~---~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      |+++..+|+.   ......++++++.+.|+|||.++|+-.-
T Consensus       265 IvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        265 IISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             EEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            9999999864   2345689999999999999999987543

>PRK05785 hypothetical protein; Provisional

Probab=99.16  E-value=1.4e-10  Score=101.96  Aligned_cols=97  Identities=8%  Similarity=0.050  Sum_probs=78.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--CceeeehhhhhcCChh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWTDD  235 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~d~  235 (309)
                      ...+|||||||+|.++..+++.+ +.+ ++++|. ++|++.+++.  ..++.+|+.+. ++.  .|+|++.+++|+++|.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~-v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~  126 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-KYY-VVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI  126 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-CCE-EEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH
Confidence            35799999999999999999987 567 999999 7899988764  34677888653 444  3999999999999876


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          236 ECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       236 ~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                        .+.|++++++|+|  .+.++|...|+.
T Consensus       127 --~~~l~e~~RvLkp--~~~ile~~~p~~  151 (226)
T PRK05785        127 --EKVIAEFTRVSRK--QVGFIAMGKPDN  151 (226)
T ss_pred             --HHHHHHHHHHhcC--ceEEEEeCCCCc
Confidence              4899999999999  355667665543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.16  E-value=4.9e-10  Score=97.62  Aligned_cols=101  Identities=11%  Similarity=0.036  Sum_probs=82.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------------------CCCCceEEeCCCCCCCC-
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------------------SIPGVTHIGGDMFNSIP-  218 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------------------~~~ri~~~~~d~~~~~p-  218 (309)
                      ....+|||+|||.|..+..|+++  +.+ ++++|+ |..++.+.                  +..+|+++.+|+++..+ 
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~  109 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA  109 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence            45579999999999999999986  567 999999 55555431                  12579999999998532 


Q ss_pred             ---CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          219 ---AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       219 ---~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                         ..|.|+-+.++|+++.++..+.++++.+.|+|||++++.-...+
T Consensus       110 ~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~  156 (213)
T TIGR03840       110 DLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYD  156 (213)
T ss_pred             cCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcC
Confidence               24999999999999999999999999999999998777755443

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.15  E-value=8.1e-11  Score=100.00  Aligned_cols=91  Identities=18%  Similarity=0.153  Sum_probs=72.4

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCC--CCceeeehhhhhc
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIP--AANAIFMKWVLAT  231 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p--~~D~i~~~~vlh~  231 (309)
                      +.+|+|||||+|..+..++..+|+.+ ++++|. +.+++.+++      .++++++.+|+.+..+  ..|+|++.. +|+
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~-V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~  120 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELK-LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS  120 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC
Confidence            57999999999999999999999999 999998 556555432      2579999999976422  259998866 543


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +     ..+++.+++.|+|||++++..
T Consensus       121 ~-----~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       121 L-----NVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             H-----HHHHHHHHHhcCCCCEEEEEc
Confidence            3     357888899999999999874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR03438 probable methyltransferase

Probab=99.15  E-value=1.8e-10  Score=105.70  Aligned_cols=98  Identities=18%  Similarity=0.267  Sum_probs=78.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC--CCC-----C-ce
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS--IPA-----A-NA  222 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~--~p~-----~-D~  222 (309)
                      ...+|||+|||+|..+..|++..+ ..+ ++++|+ +++++.++++       -+|.++++|+.+.  ++.     . .+
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~-~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~  141 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPAR-YVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG  141 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCe-EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence            446899999999999999999987 577 999999 5677666432       3467789999864  222     1 35


Q ss_pred             eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +++...+|+++++++.++|++++++|+|||.++|.-
T Consensus       142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       142 FFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             EEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            666789999999999999999999999999888643

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.14  E-value=1.7e-10  Score=98.46  Aligned_cols=94  Identities=19%  Similarity=0.158  Sum_probs=76.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--Cceeeehhhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--ANAIFMKWVLA  230 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--~D~i~~~~vlh  230 (309)
                      ...+|||||||+|..+..+++.+|+.+ ++++|. +.+++.++++      ++++++.+|+.+..+.  .|+|+++..  
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~-V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--  121 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELK-VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--  121 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence            468999999999999999999999999 999998 6777766542      4699999998764222  599998652  


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                        .  ....+++++++.|+|||++++.+..
T Consensus       122 --~--~~~~~l~~~~~~LkpGG~lv~~~~~  147 (187)
T PRK00107        122 --A--SLSDLVELCLPLLKPGGRFLALKGR  147 (187)
T ss_pred             --c--CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence              2  2357999999999999999988644

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.13  E-value=6.5e-11  Score=103.49  Aligned_cols=97  Identities=15%  Similarity=0.061  Sum_probs=81.8

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------------CCceEEeCCCCCCCCCCceeeehh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------------PGVTHIGGDMFNSIPAANAIFMKW  227 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------------~ri~~~~~d~~~~~p~~D~i~~~~  227 (309)
                      +.+|||||||.|.++.-|++..  .+ ++++|. +.+++.|+++            .|+++.+.|.....+..|+|+++-
T Consensus        90 g~~ilDvGCGgGLLSepLArlg--a~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse  166 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG--AQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE  166 (282)
T ss_pred             CceEEEeccCccccchhhHhhC--Ce-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence            3679999999999999999886  55 999998 6788887653            257788877766666689999999


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      +++|..|.  ..+++.+.+.|+|||+++|......
T Consensus       167 vleHV~dp--~~~l~~l~~~lkP~G~lfittinrt  199 (282)
T KOG1270|consen  167 VLEHVKDP--QEFLNCLSALLKPNGRLFITTINRT  199 (282)
T ss_pred             HHHHHhCH--HHHHHHHHHHhCCCCceEeeehhhh
Confidence            99999877  4899999999999999999886544

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.11  E-value=2.5e-10  Score=97.21  Aligned_cols=108  Identities=15%  Similarity=0.123  Sum_probs=81.5

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhCC-----CCCCceEEeCCCCCC-CCCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEAP-----SIPGVTHIGGDMFNS-IPAA-  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a~-----~~~ri~~~~~d~~~~-~p~~-  220 (309)
                      +.+++..+ .-+..++||+|||.|+.+.-|+++  +.. ++++|.+ ..++.++     +.-.|+....|+.+. +++. 
T Consensus        20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~-VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y   95 (192)
T PF03848_consen   20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFD-VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY   95 (192)
T ss_dssp             HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-E-EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred             HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence            45666665 556789999999999999999998  556 9999983 3343332     123488899998765 5554 


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      |+|+...++++++.+...++++++.++++|||.+++...+
T Consensus        96 D~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~  135 (192)
T PF03848_consen   96 DFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM  135 (192)
T ss_dssp             EEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence            9999999999999999999999999999999998886654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.08  E-value=5.2e-10  Score=94.80  Aligned_cols=100  Identities=18%  Similarity=0.273  Sum_probs=80.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC-CceeeehhhhhcC
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA-ANAIFMKWVLATW  232 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~-~D~i~~~~vlh~~  232 (309)
                      +..+|+|+|||+|.++..+++..+  + ++++|. |.+++.++++     .+++++.+|+++..+. .|+|+++..+|..
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~   95 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGK--C-ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPL   95 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCC--E-EEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCC
Confidence            346899999999999999999876  7 999998 7777766542     4688899998775444 5999998887766


Q ss_pred             Chh-------------------HHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          233 TDD-------------------ECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       233 ~d~-------------------~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ++.                   -..++|+++.+.|+|||++++++....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~  144 (179)
T TIGR00537        96 EDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN  144 (179)
T ss_pred             cchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence            532                   135789999999999999999886555

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.07  E-value=2e-10  Score=99.61  Aligned_cols=99  Identities=17%  Similarity=0.104  Sum_probs=79.3

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CC--ceEEeCCCCCC-C--CCCceeeehhhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PG--VTHIGGDMFNS-I--PAANAIFMKWVLA  230 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~r--i~~~~~d~~~~-~--p~~D~i~~~~vlh  230 (309)
                      ...+|||||||-|.++..+++..  .+ ++++|+ ++.++.|+.+   ..  +.+.+....+. .  ...|+|++..+|+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G--a~-VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG--AS-VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC--Ce-eEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            35799999999999999999986  67 999998 7788888754   33  33555544332 2  2359999999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |.++++  .++++|.+.+||||.+++.......
T Consensus       136 Hv~dp~--~~~~~c~~lvkP~G~lf~STinrt~  166 (243)
T COG2227         136 HVPDPE--SFLRACAKLVKPGGILFLSTINRTL  166 (243)
T ss_pred             ccCCHH--HHHHHHHHHcCCCcEEEEeccccCH
Confidence            999996  5999999999999999998776443

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.07  E-value=4.5e-10  Score=97.16  Aligned_cols=105  Identities=14%  Similarity=0.171  Sum_probs=78.5

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC----CCC
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS----IPA  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~----~p~  219 (309)
                      +.+.+. - ...+|||||||+|.++..+++.+|+.+ ++++|. +.+++.+++      .++++++.+|+.+.    ++.
T Consensus        33 ~~~~~~-~-~~~~VLDiGcGtG~~~~~la~~~p~~~-v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~  109 (202)
T PRK00121         33 WAELFG-N-DAPIHLEIGFGKGEFLVEMAKANPDIN-FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPD  109 (202)
T ss_pred             HHHHcC-C-CCCeEEEEccCCCHHHHHHHHHCCCcc-EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCc
Confidence            444443 2 457899999999999999999999999 999998 667776653      26899999998321    333


Q ss_pred             --CceeeehhhhhcCC------hhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          220 --ANAIFMKWVLATWT------DDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       220 --~D~i~~~~vlh~~~------d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                        .|.|++.+..+...      ......+|+++++.|+|||.+++..
T Consensus       110 ~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        110 GSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             cccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence              49998865442111      1124689999999999999999874

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.07  E-value=1.3e-09  Score=95.24  Aligned_cols=102  Identities=12%  Similarity=0.038  Sum_probs=81.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------------------CCCCceEEeCCCCCCCC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------------------SIPGVTHIGGDMFNSIP  218 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------------------~~~ri~~~~~d~~~~~p  218 (309)
                      ..+..+|||+|||.|..+..|+++  +.+ ++++|+ +..++.+.                  ...+|++..+|+++..+
T Consensus        35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~  111 (218)
T PRK13255         35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA  111 (218)
T ss_pred             CCCCCeEEEeCCCChHhHHHHHhC--CCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence            345579999999999999999986  667 999999 45555431                  12579999999998632


Q ss_pred             ----CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          219 ----AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       219 ----~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                          ..|+|+-+.++|+++.+...+.++++.+.|+|||++++.....+
T Consensus       112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~  159 (218)
T PRK13255        112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYP  159 (218)
T ss_pred             ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeC
Confidence                24999999999999999999999999999999997655444333

>PRK04266 fibrillarin; Provisional

Probab=99.07  E-value=1.7e-09  Score=95.06  Aligned_cols=96  Identities=14%  Similarity=0.210  Sum_probs=73.7

Q ss_pred             hcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHh----hCCCCCCceEEeCCCCCC-----CCC-Cce
Q 021707          154 SYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVG----EAPSIPGVTHIGGDMFNS-----IPA-ANA  222 (309)
Q Consensus       154 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~----~a~~~~ri~~~~~d~~~~-----~p~-~D~  222 (309)
                      .++ ..+..+|+|+|||+|.++..+++..+..+ ++++|. +.+++    .+++..+|.++.+|...+     +++ .|+
T Consensus        67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~-V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~  144 (226)
T PRK04266         67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGV-VYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV  144 (226)
T ss_pred             hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCe-EEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence            344 66778999999999999999999987667 999998 55554    444457899999998653     233 488


Q ss_pred             eeehhhhhcCChh-HHHHHHHHHHHhcCCCcEEEE
Q 021707          223 IFMKWVLATWTDD-ECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       223 i~~~~vlh~~~d~-~~~~iL~~~~~aL~pgG~l~i  256 (309)
                      |+     |+.++. +...+|+++++.|+|||+++|
T Consensus       145 i~-----~d~~~p~~~~~~L~~~~r~LKpGG~lvI  174 (226)
T PRK04266        145 IY-----QDVAQPNQAEIAIDNAEFFLKDGGYLLL  174 (226)
T ss_pred             EE-----ECCCChhHHHHHHHHHHHhcCCCcEEEE
Confidence            87     344433 334678999999999999999

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.05  E-value=3.6e-10  Score=97.11  Aligned_cols=97  Identities=13%  Similarity=0.232  Sum_probs=74.9

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC----CCC--Cceeeeh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS----IPA--ANAIFMK  226 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~----~p~--~D~i~~~  226 (309)
                      ...++||||||+|.++..+++++|+.+ ++++|. +.+++.+++      ..+++++.+|+.+.    .+.  .|.+++.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~-v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKN-FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            346899999999999999999999999 999999 667766643      26899999998642    343  3888776


Q ss_pred             hhhhcCChhH-------HHHHHHHHHHhcCCCcEEEEec
Q 021707          227 WVLATWTDDE-------CKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       227 ~vlh~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +.. .|+...       ...++++++++|+|||.|++..
T Consensus        95 ~pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t  132 (194)
T TIGR00091        95 FPD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT  132 (194)
T ss_pred             CCC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence            543 233221       1479999999999999998764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=1.8e-09  Score=97.08  Aligned_cols=110  Identities=13%  Similarity=0.104  Sum_probs=87.7

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC-
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA-  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~-  219 (309)
                      .+-+++.++ .....+|+|+|||.|.+++.+++.+|+.+ ++.+|. ...++.++++      .+..+...|.+++.+. 
T Consensus       147 S~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~-vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k  224 (300)
T COG2813         147 SRLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAK-LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK  224 (300)
T ss_pred             HHHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCe-EEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence            345677776 44445999999999999999999999999 999998 4566666653      3336777888888555 


Q ss_pred             Cceeeehhhhhc---CChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          220 ANAIFMKWVLAT---WTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       220 ~D~i~~~~vlh~---~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      .|.|+++--+|.   ....-+.+++++++++|++||.|.|+-.
T Consensus       225 fd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         225 FDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             ccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            699999999985   2334456999999999999999999866

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.01  E-value=1.5e-09  Score=94.08  Aligned_cols=99  Identities=15%  Similarity=0.085  Sum_probs=76.0

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~  219 (309)
                      ..+++.++ .....+|||||||+|..+..+++..+ ..+ ++++|. +.+++.++++       .+++++.+|..+.++.
T Consensus        62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~-V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~  139 (205)
T PRK13944         62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGK-VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK  139 (205)
T ss_pred             HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc
Confidence            34555554 55668999999999999999998875 456 999998 6777666542       4689999999875442


Q ss_pred             ---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          220 ---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       220 ---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                         .|+|++...+++++        +++.+.|+|||++++.
T Consensus       140 ~~~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        140 HAPFDAIIVTAAASTIP--------SALVRQLKDGGVLVIP  172 (205)
T ss_pred             CCCccEEEEccCcchhh--------HHHHHhcCcCcEEEEE
Confidence               49999998877655        3577889999999874

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.00  E-value=2e-09  Score=90.22  Aligned_cols=104  Identities=21%  Similarity=0.238  Sum_probs=84.4

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCCC
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPAA  220 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~~  220 (309)
                      .++.+. ..+..+++|||||+|..+.+.+..+|..+ ++.+|. ++.++..+++      ++++++.||.-+.   .|..
T Consensus        26 ~ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~  103 (187)
T COG2242          26 TLSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP  103 (187)
T ss_pred             HHHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence            456664 77788999999999999999999999999 999998 6666665543      8999999998665   3445


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      |.||+.-.      .....+|+.+.+.|+|||+|++.-..+.
T Consensus       104 daiFIGGg------~~i~~ile~~~~~l~~ggrlV~naitlE  139 (187)
T COG2242         104 DAIFIGGG------GNIEEILEAAWERLKPGGRLVANAITLE  139 (187)
T ss_pred             CEEEECCC------CCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence            99999875      2345899999999999999998854444

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.99  E-value=2.8e-09  Score=93.63  Aligned_cols=90  Identities=17%  Similarity=0.195  Sum_probs=72.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC-Cceeeehhhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA-ANAIFMKWVL  229 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~-~D~i~~~~vl  229 (309)
                      .+..+|||||||+|.++..+++..  .+ ++++|. +.+++.+++.       +++++..+|+ +...+ .|+|++..++
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~fD~v~~~~~l  137 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRG--AK-VVASDISPQMVEEARERAPEAGLAGNITFEVGDL-ESLLGRFDTVVCLDVL  137 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc-hhccCCcCEEEEcchh
Confidence            446799999999999999999875  45 999998 6777776542       4799999994 33333 5999999999


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCc
Q 021707          230 ATWTDDECKLIMENCYKALLAGG  252 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG  252 (309)
                      |++++++..++++++.+.+++++
T Consensus       138 ~~~~~~~~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        138 IHYPQEDAARMLAHLASLTRGSL  160 (230)
T ss_pred             hcCCHHHHHHHHHHHHhhcCCeE
Confidence            99999988999999998765444

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.98  E-value=2.6e-09  Score=93.09  Aligned_cols=100  Identities=14%  Similarity=0.166  Sum_probs=77.2

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~  219 (309)
                      ...+++.++ ..+..+|||||||+|.++..+++.. ++.+ ++++|. +.+++.++++      .+++++.+|..+.++.
T Consensus        65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~-V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~  142 (212)
T PRK13942         65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGK-VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEE  142 (212)
T ss_pred             HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCc
Confidence            445666665 7778899999999999999988875 4467 999998 6777776542      5799999998775432


Q ss_pred             ---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          220 ---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       220 ---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                         .|+|++....+..+        +.+.+.|+|||++++.
T Consensus       143 ~~~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        143 NAPYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CCCcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence               49999877665443        4567789999999885

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.98  E-value=2.1e-09  Score=97.75  Aligned_cols=96  Identities=21%  Similarity=0.205  Sum_probs=75.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC--Cceeeehh--
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA--ANAIFMKW--  227 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~--~D~i~~~~--  227 (309)
                      +..+|+|+|||+|.++..+++++|+.+ ++++|. +.+++.++++       ++++++.+|+++.++.  .|+|+++-  
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~-v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAE-VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY  199 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence            346899999999999999999999999 999999 6777777642       5799999999877654  49999751  


Q ss_pred             -----------hhhcCCh----------hHHHHHHHHHHHhcCCCcEEEE
Q 021707          228 -----------VLATWTD----------DECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       228 -----------vlh~~~d----------~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                                 ..++.|.          +...++++++.+.|+|||++++
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~  249 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                       1121111          1246889999999999998764

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.98  E-value=2.4e-09  Score=92.03  Aligned_cols=103  Identities=19%  Similarity=0.197  Sum_probs=78.4

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CC-C
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IP-A  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p-~  219 (309)
                      +++.++ .....+|+|+|||+|.++..+++..|+.+ ++++|. |.+++.++++      ++++++.+|..+.   .. .
T Consensus        32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~-V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~  109 (196)
T PRK07402         32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGR-VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPA  109 (196)
T ss_pred             HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCC
Confidence            455554 56678999999999999999998889888 999999 7777776542      5799999988652   22 2


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      .|.+++..      .....++++++++.|+|||++++.....
T Consensus       110 ~d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~~~  145 (196)
T PRK07402        110 PDRVCIEG------GRPIKEILQAVWQYLKPGGRLVATASSL  145 (196)
T ss_pred             CCEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence            36654421      2234689999999999999999986543

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.97  E-value=7.7e-09  Score=89.92  Aligned_cols=103  Identities=18%  Similarity=0.254  Sum_probs=76.5

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeechhHHhhCCCCCCceEEeCCCCCC---------CCC-
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS---------IPA-  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~---------~p~-  219 (309)
                      +.+.+.-+.+..+|||||||+|.++..+++.. +..+ ++++|+.++    ...++++++.+|+.+.         .+. 
T Consensus        42 ~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~-V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         42 IQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGR-VIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             HHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCce-EEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence            34444323556799999999999999999987 4567 999999663    2346799999999873         222 


Q ss_pred             -CceeeehhhhhcCChh---------HHHHHHHHHHHhcCCCcEEEEec
Q 021707          220 -ANAIFMKWVLATWTDD---------ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~---------~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                       .|+|++....|...+.         ....+|+.+++.|+|||.+++..
T Consensus       117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~  165 (209)
T PRK11188        117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV  165 (209)
T ss_pred             CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence             4999987665544321         12578999999999999999974

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.94  E-value=4.3e-09  Score=98.63  Aligned_cols=105  Identities=17%  Similarity=0.271  Sum_probs=79.1

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCC---CCCC
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFN---SIPA  219 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~---~~p~  219 (309)
                      .+++.+. -.....+||||||+|.++..+++++|+.. ++++|. +.+++.+.+      ..++.++.+|+..   .+|.
T Consensus       113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~-~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~  190 (390)
T PRK14121        113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKL-FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPS  190 (390)
T ss_pred             HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCC-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCC
Confidence            4555553 34456899999999999999999999999 999998 556555432      2689999999843   3554


Q ss_pred             -C-ceeeehhhhhcCChhH-----HHHHHHHHHHhcCCCcEEEEe
Q 021707          220 -A-NAIFMKWVLATWTDDE-----CKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       220 -~-D~i~~~~vlh~~~d~~-----~~~iL~~~~~aL~pgG~l~i~  257 (309)
                       . |.|++++.. .|+...     ...+|+.++++|+|||.+.+.
T Consensus       191 ~s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~  234 (390)
T PRK14121        191 NSVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKPGGTLELR  234 (390)
T ss_pred             CceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCCCcEEEEE
Confidence             3 888876432 344322     257899999999999999885

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.94  E-value=4.4e-09  Score=91.77  Aligned_cols=99  Identities=17%  Similarity=0.172  Sum_probs=76.4

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC--
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP--  218 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p--  218 (309)
                      ..+++.++ .....+|||||||+|.++..+++..+ +.+ ++++|. +.+++.++++      ++++++.+|..+..+  
T Consensus        67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~-V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~  144 (215)
T TIGR00080        67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGL-VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL  144 (215)
T ss_pred             HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence            44566665 66778999999999999999999865 467 999997 7777776542      689999999976533  


Q ss_pred             -CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          219 -AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       219 -~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                       ..|+|++....+.        +.+.+.+.|+|||++++.
T Consensus       145 ~~fD~Ii~~~~~~~--------~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       145 APYDRIYVTAAGPK--------IPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCCCEEEEcCCccc--------ccHHHHHhcCcCcEEEEE
Confidence             2599998765543        345578899999998874

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.93  E-value=4e-09  Score=93.80  Aligned_cols=97  Identities=21%  Similarity=0.269  Sum_probs=74.9

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--Cceeeehhhh-
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--ANAIFMKWVL-  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--~D~i~~~~vl-  229 (309)
                      ...+|+|+|||+|.++..+++.+|+.+ ++++|. +.+++.++++      ++++++.+|+++.++.  .|+|+++-.. 
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~  165 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDAR-VTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYI  165 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCC
Confidence            346899999999999999999999999 999998 6677666532      5799999999886543  4999874322 


Q ss_pred             -----hcCChh------------------HHHHHHHHHHHhcCCCcEEEEe
Q 021707          230 -----ATWTDD------------------ECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       230 -----h~~~d~------------------~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                           |.+...                  ....+++++.+.|+|||++++.
T Consensus       166 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~  216 (251)
T TIGR03534       166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE  216 (251)
T ss_pred             chhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence                 222211                  1247899999999999998875

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.93  E-value=3.4e-09  Score=97.39  Aligned_cols=94  Identities=19%  Similarity=0.188  Sum_probs=74.7

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC--Cceeeehh----
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA--ANAIFMKW----  227 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~--~D~i~~~~----  227 (309)
                      .+|+|+|||+|.++..+++.+|+.+ ++++|. +.+++.++++       ++|+++.+|+++.+|.  .|+|+++-    
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~-V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAE-VDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence            6899999999999999999999999 999999 7777776642       5799999999877654  49999751    


Q ss_pred             ---------hhhcCCh----------hHHHHHHHHHHHhcCCCcEEEE
Q 021707          228 ---------VLATWTD----------DECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       228 ---------vlh~~~d----------~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                               ..++.|.          +...++++++.+.|+|||++++
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~  261 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV  261 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence                     1122221          2246899999999999998876

>PRK04457 spermidine synthase; Provisional

Probab=98.93  E-value=2.3e-09  Score=96.34  Aligned_cols=97  Identities=14%  Similarity=0.183  Sum_probs=76.3

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC---CCC-Cceeeehh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS---IPA-ANAIFMKW  227 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~---~p~-~D~i~~~~  227 (309)
                      .+.+|||||||.|.++..+++.+|+.+ ++++|+ |.+++.+++       .+|++++.+|..+.   .+. .|+|++..
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTR-QTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            457899999999999999999999999 999999 888887764       27899999998653   344 49998742


Q ss_pred             hh-hcCChh-HHHHHHHHHHHhcCCCcEEEEe
Q 021707          228 VL-ATWTDD-ECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       228 vl-h~~~d~-~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .- ...+.. ...++++++++.|+|||++++.
T Consensus       145 ~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        145 FDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            11 112211 1368999999999999999986

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.92  E-value=2.6e-09  Score=96.60  Aligned_cols=90  Identities=19%  Similarity=0.222  Sum_probs=71.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCC---ceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC--Cceeeehhhhhc
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFI---CEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA--ANAIFMKWVLAT  231 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~---~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~  231 (309)
                      ...+|||||||+|.++..+++.+|..   + ++++|+ +.+++.+++. +++++..+|..+. ++.  .|+|+....   
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~-v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---  160 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQ-LFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---  160 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCe-EEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC---
Confidence            34689999999999999999988754   5 899998 6788877654 7899999998763 444  499986543   


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                       +     ..+++++++|+|||+++++.+
T Consensus       161 -~-----~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        161 -P-----CKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             -C-----CCHHHHHhhccCCCEEEEEeC
Confidence             1     246789999999999998754

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.90  E-value=8e-09  Score=94.02  Aligned_cols=94  Identities=18%  Similarity=0.205  Sum_probs=74.2

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC--Cceeeeh-----
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA--ANAIFMK-----  226 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~--~D~i~~~-----  226 (309)
                      .+|+|+|||+|.++..++..+|+.+ ++++|. +.+++.++++       .+++++.+|++++.+.  .|+|+++     
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~-v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~  194 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAE-VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYID  194 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCC
Confidence            5899999999999999999999999 999998 6677766642       4699999999987654  4998875     


Q ss_pred             --------hhhhcCCh----------hHHHHHHHHHHHhcCCCcEEEE
Q 021707          227 --------WVLATWTD----------DECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       227 --------~vlh~~~d----------~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                              .+.++-|.          +...++++++.+.|+|||.+++
T Consensus       195 ~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~  242 (284)
T TIGR00536       195 EEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC  242 (284)
T ss_pred             cchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence                    12222221          2467899999999999997654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.86  E-value=1.4e-08  Score=76.05  Aligned_cols=92  Identities=18%  Similarity=0.181  Sum_probs=74.0

Q ss_pred             eEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------CCCCceEEeCCCCCCC---CC-Cceeeehhhhhc
Q 021707          163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------SIPGVTHIGGDMFNSI---PA-ANAIFMKWVLAT  231 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------~~~ri~~~~~d~~~~~---p~-~D~i~~~~vlh~  231 (309)
                      +|+|+|||.|.++..+++ .+..+ ++++|. +..+..++      ...+++++.+|+.+..   +. .|++++...+++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCE-EEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence            589999999999999998 66777 999998 44444333      2378999999998763   22 499999999987


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      + .+...++++++.+.|+|||.+++.
T Consensus        79 ~-~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          79 L-VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             h-hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            5 456689999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.84  E-value=9.9e-09  Score=94.42  Aligned_cols=92  Identities=14%  Similarity=0.050  Sum_probs=70.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----------CCceEEeCCCCCCCCCCceeeehh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----------PGVTHIGGDMFNSIPAANAIFMKW  227 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----------~ri~~~~~d~~~~~p~~D~i~~~~  227 (309)
                      +..+|||||||+|.++..+++.  +.+ ++++|+ +.+++.++++           .++++..+|+.+.....|+|++..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~-V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~  220 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAI-VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD  220 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence            3579999999999999999986  467 999999 6687766542           357888888754322359999999


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEE
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      ++|++++++...+++.+.+ +.+++.++
T Consensus       221 vL~H~p~~~~~~ll~~l~~-l~~g~liI  247 (315)
T PLN02585        221 VLIHYPQDKADGMIAHLAS-LAEKRLII  247 (315)
T ss_pred             EEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence            9999998877788888875 45555443

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.84  E-value=2.1e-08  Score=90.55  Aligned_cols=98  Identities=22%  Similarity=0.286  Sum_probs=75.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCC-C-Cceeeehhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIP-A-ANAIFMKWV  228 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p-~-~D~i~~~~v  228 (309)
                      ..+..+|+|+|||+|..+..+++.+|+.+ ++++|. +.+++.+++      ..+++++.+|++++.+ . .|+|+++-.
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~-v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npP  184 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAE-VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPP  184 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCC
Confidence            34567899999999999999999999999 999998 566666553      2689999999988754 3 499987422


Q ss_pred             h------hcCCh------------------hHHHHHHHHHHHhcCCCcEEEE
Q 021707          229 L------ATWTD------------------DECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       229 l------h~~~d------------------~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                      .      +...+                  +...++++++.+.|+|||++++
T Consensus       185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~  236 (275)
T PRK09328        185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL  236 (275)
T ss_pred             cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence            1      11111                  1236789999999999999887

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.83  E-value=9.7e-09  Score=90.45  Aligned_cols=107  Identities=15%  Similarity=0.154  Sum_probs=82.1

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC---CC
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI---PA  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~---p~  219 (309)
                      ++..+-......+|+|+|||+|..+..+++++++++ ++++|+ +.+.+.|+++       +||++++.|+.+..   +.
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~  113 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF  113 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence            444443244578999999999999999999999999 999999 5666666542       89999999997642   22


Q ss_pred             --CceeeehhhhhcCCh----------------hHHHHHHHHHHHhcCCCcEEEEec
Q 021707          220 --ANAIFMKWVLATWTD----------------DECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d----------------~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                        .|+|+++--.+.-.+                -....+++.+.+.|+|||++.++-
T Consensus       114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~  170 (248)
T COG4123         114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH  170 (248)
T ss_pred             cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence              489998755443222                135688999999999999999874

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.82  E-value=2.2e-08  Score=86.24  Aligned_cols=98  Identities=14%  Similarity=0.210  Sum_probs=75.2

Q ss_pred             HhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC---C-C
Q 021707          152 LDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS---I-P  218 (309)
Q Consensus       152 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~---~-p  218 (309)
                      +..++ .....+|+|+|||+|.++..+++.. +..+ ++++|. +.+++.+++       .++++++.+|+.+.   . +
T Consensus        33 l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~-v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~  110 (198)
T PRK00377         33 LSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE  110 (198)
T ss_pred             HHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence            34554 6677899999999999999998764 5678 999999 777776543       25789999998653   2 2


Q ss_pred             CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEE
Q 021707          219 AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       219 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                      ..|+|++..     ...+...+|+.+.+.|+|||++++
T Consensus       111 ~~D~V~~~~-----~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        111 KFDRIFIGG-----GSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             CCCEEEECC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence            359998853     223446899999999999999986

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.81  E-value=7.3e-09  Score=89.05  Aligned_cols=103  Identities=19%  Similarity=0.292  Sum_probs=73.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCC-ceEEeCCCCCCCCC---Cceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPG-VTHIGGDMFNSIPA---ANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~r-i~~~~~d~~~~~p~---~D~i~~~~vl  229 (309)
                      +..+.||+|+|.|+.+..++...  .+++.++|. +..++.|++     ..+ .++.+..+.+..|+   .|+|++.|++
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l  132 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL  132 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence            35789999999999999887554  333778886 777777763     234 34555444332343   3999999999


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      -|++|++.++.|++|+++|+|+|.|+|-|.+...+
T Consensus       133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~  167 (218)
T PF05891_consen  133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSG  167 (218)
T ss_dssp             GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSS
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCC
Confidence            99999999999999999999999999999887654

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.81  E-value=4.9e-08  Score=83.33  Aligned_cols=102  Identities=17%  Similarity=0.258  Sum_probs=74.0

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeechhHHhhCCCCCCceEEeCCCCCC---------CCC-
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS---------IPA-  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~---------~p~-  219 (309)
                      +.+.+....++.+|||+|||+|.++..+++++ +..+ ++++|+.+..    ..++++++.+|+.+.         .+. 
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~-v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGR-VIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCce-EEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence            33344334667899999999999999999887 5677 9999996532    346789999998653         233 


Q ss_pred             -Cceeeehhhhh---cCC------hhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          220 -ANAIFMKWVLA---TWT------DDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       220 -~D~i~~~~vlh---~~~------d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                       .|+|++....|   .|.      .+...++|+++++.|+|||++++.
T Consensus        98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence             49999754322   111      122468999999999999999986

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.80  E-value=5.3e-08  Score=87.62  Aligned_cols=112  Identities=20%  Similarity=0.212  Sum_probs=80.3

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech-------hHHhhCC-CCCCceEEeCCCCCCCC-
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-------EVVGEAP-SIPGVTHIGGDMFNSIP-  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-------~~~~~a~-~~~ri~~~~~d~~~~~p-  218 (309)
                      .+.+...+..+ .+.+|+|||||.|.++.+++.+.|.  .++++|..       ..++..- ...++.+.+.-+ +.+| 
T Consensus       104 W~rl~p~l~~L-~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~  179 (315)
T PF08003_consen  104 WDRLLPHLPDL-KGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPN  179 (315)
T ss_pred             HHHHHhhhCCc-CCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccc
Confidence            45566666324 4579999999999999999998654  38999972       2223222 223445543322 3333 


Q ss_pred             -C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          219 -A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       219 -~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                       + +|+|++..||+|..++  ...|+++++.|+|||.+++-..+.+.+.
T Consensus       180 ~~~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~  226 (315)
T PF08003_consen  180 LGAFDTVFSMGVLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDE  226 (315)
T ss_pred             cCCcCEEEEeeehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCC
Confidence             2 4999999999999888  6899999999999998887777766654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.79  E-value=5.3e-09  Score=81.88  Aligned_cols=94  Identities=23%  Similarity=0.253  Sum_probs=73.0

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC---CCC--Cceeeehhh
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS---IPA--ANAIFMKWV  228 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~---~p~--~D~i~~~~v  228 (309)
                      .+|+|+|||+|.++..+++.. ..+ ++++|+ |..++.++.       .++++++.+|+++.   .+.  .|+|+++-.
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~-~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP   79 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AAR-VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP   79 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCE-EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCe-EEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence            589999999999999999998 677 999999 666665543       27899999998763   333  499999866


Q ss_pred             hhcCC------hhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          229 LATWT------DDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       229 lh~~~------d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .+...      .+...++++++.+.|+|||.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~  114 (117)
T PF13659_consen   80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFI  114 (117)
T ss_dssp             TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            65432      123568999999999999999876

...

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.76  E-value=3.8e-08  Score=86.71  Aligned_cols=95  Identities=16%  Similarity=0.042  Sum_probs=74.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCCC--C-C-Cceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNSI--P-A-ANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~~--p-~-~D~i~~~~vl  229 (309)
                      +..+|||||||+|.++..+++.  ..+ ++++|. +.+++.+++     ..+++++..|+.+..  + . .|+|++.+++
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l  124 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL--GAD-VTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML  124 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence            4678999999999999988876  457 999998 556665543     235777777765431  2 2 4999999999


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ++.++.  ..+|+++.+.|+|||++++...
T Consensus       125 ~~~~~~--~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        125 EHVPDP--ASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             hccCCH--HHHHHHHHHHcCCCcEEEEEec
Confidence            998876  4789999999999999998754

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.76  E-value=1.2e-08  Score=88.37  Aligned_cols=100  Identities=16%  Similarity=0.224  Sum_probs=83.6

Q ss_pred             ceEEEecCCccHHHHHHHHhcCC--CceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-----CCC-C-ceeeeh
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHF--ICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-----IPA-A-NAIFMK  226 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-----~p~-~-D~i~~~  226 (309)
                      .+|++||||.|....-+++.+|+  ++ +..+|. |..++..+++     .++.--..|+..+     .+. . |++.+.
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~-v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLK-VYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeE-EEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence            38999999999999999999998  88 999998 7788877764     5566556676654     222 3 999999


Q ss_pred             hhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          227 WVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ++|...+++.-.+.++++++.|+|||.|+..|--.-
T Consensus       152 FvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~  187 (264)
T KOG2361|consen  152 FVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRY  187 (264)
T ss_pred             EEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccc
Confidence            999999999999999999999999999999875443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.75  E-value=1.1e-07  Score=83.11  Aligned_cols=102  Identities=10%  Similarity=-0.062  Sum_probs=84.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------------------CCCceEEeCCCCCCCC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------------------IPGVTHIGGDMFNSIP  218 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------------------~~ri~~~~~d~~~~~p  218 (309)
                      ..+..+|++.|||.|.-+..|++.  +.+ ++++|+ +..++.+.+                  ..+|++.++|+|+..+
T Consensus        41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~  117 (226)
T PRK13256         41 INDSSVCLIPMCGCSIDMLFFLSK--GVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK  117 (226)
T ss_pred             CCCCCeEEEeCCCChHHHHHHHhC--CCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence            344579999999999999999987  556 999999 445555311                  2589999999998632


Q ss_pred             ------CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          219 ------AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       219 ------~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                            ..|+|+=..+++.++++...+..+.+.+.|+|||+++++-...+
T Consensus       118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~  167 (226)
T PRK13256        118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD  167 (226)
T ss_pred             cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence                  24999999999999999999999999999999999998876544

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.75  E-value=2e-08  Score=84.95  Aligned_cols=101  Identities=17%  Similarity=0.168  Sum_probs=74.4

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCce-EEeCCCCCC--CCCC--ceeeehhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVT-HIGGDMFNS--IPAA--NAIFMKWV  228 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~-~~~~d~~~~--~p~~--D~i~~~~v  228 (309)
                      ...||+||||+|..-.- -..-|..+ +|.+|. |.|-+.+.+      ...+. |+.++..+.  ++.+  |+|++..+
T Consensus        77 K~~vLEvgcGtG~Nfkf-y~~~p~~s-vt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tlv  154 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKF-YPWKPINS-VTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLV  154 (252)
T ss_pred             ccceEEecccCCCCccc-ccCCCCce-EEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEE
Confidence            35689999999986521 11224556 999998 555544332      25666 777776543  3443  99999999


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      |....+.  ++.|+++++.|+|||++++.|.+..+.+
T Consensus       155 LCSve~~--~k~L~e~~rlLRpgG~iifiEHva~~y~  189 (252)
T KOG4300|consen  155 LCSVEDP--VKQLNEVRRLLRPGGRIIFIEHVAGEYG  189 (252)
T ss_pred             EeccCCH--HHHHHHHHHhcCCCcEEEEEecccccch
Confidence            9866655  7999999999999999999999988875

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.74  E-value=3.8e-08  Score=84.50  Aligned_cols=100  Identities=18%  Similarity=0.235  Sum_probs=70.4

Q ss_pred             CcceEEEecCCccH----HHHHHHHhcC-----CCceEEEeec-hhHHhhCCCC--------------------------
Q 021707          160 GVKRLVDVGGSAGD----CLRMILQKHH-----FICEGINFDL-PEVVGEAPSI--------------------------  203 (309)
Q Consensus       160 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~~D~-p~~~~~a~~~--------------------------  203 (309)
                      +.-+|...||++|.    +++.+.+..+     +.+ +++.|+ +.+++.|++.                          
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~-I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~  109 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFR-ILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG  109 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEE-EEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceE-EEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence            56799999999997    3444444222     345 899998 6677776530                          


Q ss_pred             --------CCceEEeCCCCCC-CC-C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          204 --------PGVTHIGGDMFNS-IP-A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       204 --------~ri~~~~~d~~~~-~p-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                              .+|+|..+|..+. .+ . .|+|+|+|||-+|+++...+++++++++|+|||.|++...-
T Consensus       110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             TTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred             eeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence                    5799999999983 22 2 49999999999999999999999999999999999987543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK14967 putative methyltransferase; Provisional

Probab=98.74  E-value=5.2e-08  Score=85.53  Aligned_cols=102  Identities=14%  Similarity=0.077  Sum_probs=73.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC--Cceeeehhhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA--ANAIFMKWVL  229 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~--~D~i~~~~vl  229 (309)
                      .....+|||+|||+|.++..+++.. ..+ ++++|. +.+++.++++     .+++++.+|+.+..+.  .|+|+++--.
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~-v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy  111 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAG-AGS-VTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPY  111 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcC-CCe-EEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCC
Confidence            4456799999999999999988763 346 999998 6667655542     3588999999776543  4999986322


Q ss_pred             hcCCh-------------------hHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          230 ATWTD-------------------DECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       230 h~~~d-------------------~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      +.-++                   ....++++++.+.|+|||+++++..-.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            11100                   124578899999999999999865443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.74  E-value=3.4e-08  Score=86.34  Aligned_cols=96  Identities=17%  Similarity=0.067  Sum_probs=76.2

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCC-Cceeeehhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPA-ANAIFMKWV  228 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~-~D~i~~~~v  228 (309)
                      ...+|||+|||+|.++..+++..  .+ ++++|. +.+++.++++      .++++...|+.+.   .+. .|+|++.++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~  121 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--AN-VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEV  121 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--Ce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhH
Confidence            46799999999999999988764  45 899998 5666665442      2688888887543   223 499999999


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +|+..+.+  .+|+++++.|+|||.+++....
T Consensus       122 l~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~  151 (224)
T TIGR01983       122 LEHVPDPQ--AFIRACAQLLKPGGILFFSTIN  151 (224)
T ss_pred             HHhCCCHH--HHHHHHHHhcCCCcEEEEEecC
Confidence            99998764  7999999999999999987653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PTZ00146 fibrillarin; Provisional

Probab=98.73  E-value=1.4e-07  Score=85.29  Aligned_cols=95  Identities=17%  Similarity=0.219  Sum_probs=73.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeechh-----HHhhCCCCCCceEEeCCCCCCC------CCCceeee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDLPE-----VVGEAPSIPGVTHIGGDMFNSI------PAANAIFM  225 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~p~-----~~~~a~~~~ri~~~~~d~~~~~------p~~D~i~~  225 (309)
                      +....+|||+|||+|.++..++.... .-+ ++++|+.+     +++.+++.++|.++.+|+..+.      +..|+|++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~-VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGV-VYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence            56678999999999999999999873 456 99999842     6666666689999999986541      22499987


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ...   .++ +...++.++++.|+|||+++|.
T Consensus       209 Dva---~pd-q~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        209 DVA---QPD-QARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             eCC---Ccc-hHHHHHHHHHHhccCCCEEEEE
Confidence            764   133 4456667899999999999994

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.73  E-value=5.6e-08  Score=86.86  Aligned_cols=96  Identities=19%  Similarity=0.187  Sum_probs=73.0

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCCCCC----C-Cceeeehhhh--
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFNSIP----A-ANAIFMKWVL--  229 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~~~p----~-~D~i~~~~vl--  229 (309)
                      ..+|+|+|||+|.++..+++.+|..+ ++++|. +.+++.++++   .+++++.+|+++..+    . .|+|+++--.  
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~-v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIE-LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP  165 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence            45899999999999999999999999 999999 7788777654   347899999987543    2 4998875321  


Q ss_pred             ----hcCChh------------------HHHHHHHHHHHhcCCCcEEEEe
Q 021707          230 ----ATWTDD------------------ECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       230 ----h~~~d~------------------~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                          +..+++                  -..++++++.+.|+|||++++.
T Consensus       166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                111111                  1358888899999999988865

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.72  E-value=6.7e-08  Score=84.08  Aligned_cols=97  Identities=18%  Similarity=0.187  Sum_probs=72.9

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC---
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA---  219 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~---  219 (309)
                      .++..++ ..+..+|||||||+|.++..+++...  + ++++|. +.+++.++++      .+++++.+|..+.++.   
T Consensus        69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~-v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  144 (212)
T PRK00312         69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--R-VFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP  144 (212)
T ss_pred             HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--E-EEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence            4455554 66678999999999999987777653  6 899997 6676666542      5699999998776442   


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      .|+|++...++++        .+.+.+.|+|||++++.-
T Consensus       145 fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        145 FDRILVTAAAPEI--------PRALLEQLKEGGILVAPV  175 (212)
T ss_pred             cCEEEEccCchhh--------hHHHHHhcCCCcEEEEEE
Confidence            4999998766544        345678999999998853

>PRK14968 putative methyltransferase; Provisional

Probab=98.72  E-value=7.5e-08  Score=81.63  Aligned_cols=99  Identities=17%  Similarity=0.219  Sum_probs=73.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CC-ceEEeCCCCCCCCC--Cceeeehh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PG-VTHIGGDMFNSIPA--ANAIFMKW  227 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~r-i~~~~~d~~~~~p~--~D~i~~~~  227 (309)
                      .+..+|||+|||+|.++..+++.  ..+ ++++|. +.+++.++++       ++ +.++.+|+.+.++.  .|+|+++.
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~   98 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNP   98 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cce-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECC
Confidence            34568999999999999999988  567 999998 6677666432       22 89999999887554  49998765


Q ss_pred             hhhcCC-------------------hhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          228 VLATWT-------------------DDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       228 vlh~~~-------------------d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      ..+..+                   .....++++++.+.|+|||.+++....
T Consensus        99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968         99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            432211                   122457899999999999999887543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.71  E-value=4.5e-08  Score=89.30  Aligned_cols=96  Identities=19%  Similarity=0.120  Sum_probs=70.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC-Cceeeehhhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA-ANAIFMKWVLA  230 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~-~D~i~~~~vlh  230 (309)
                      ...+|||||||+|.++..+++.. ..+ ++++|. |.+++.++++       .++.+..+|.....+. .|+|+++... 
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g-~~~-V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-  235 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLG-AAK-VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-  235 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcC-CCe-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence            45799999999999998887653 446 999998 6677766542       4567776664333333 5999986543 


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                          ....++++++++.|+|||++++......
T Consensus       236 ----~~l~~ll~~~~~~LkpgG~li~sgi~~~  263 (288)
T TIGR00406       236 ----EVIKELYPQFSRLVKPGGWLILSGILET  263 (288)
T ss_pred             ----HHHHHHHHHHHHHcCCCcEEEEEeCcHh
Confidence                2346899999999999999999876543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.70  E-value=5.7e-08  Score=84.12  Aligned_cols=109  Identities=20%  Similarity=0.293  Sum_probs=79.6

Q ss_pred             HHHHHhhcC-CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----------------------
Q 021707          148 MTSVLDSYN-GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----------------------  203 (309)
Q Consensus       148 ~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----------------------  203 (309)
                      .+..++.+. .|-....+|||||..|.++..+++.|-... ++++|+ +..+..|+++                      
T Consensus        45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~-iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~  123 (288)
T KOG2899|consen   45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRR-ILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQ  123 (288)
T ss_pred             CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccce-eeEeeccHHHHHHHHHhccccccccccccCCCccccccc
Confidence            345666664 466788999999999999999999998777 999999 5566666542                      


Q ss_pred             -------------------CCce-------EEeCCCCCC-CCCCceeee----hhhhhcCChhHHHHHHHHHHHhcCCCc
Q 021707          204 -------------------PGVT-------HIGGDMFNS-IPAANAIFM----KWVLATWTDDECKLIMENCYKALLAGG  252 (309)
Q Consensus       204 -------------------~ri~-------~~~~d~~~~-~p~~D~i~~----~~vlh~~~d~~~~~iL~~~~~aL~pgG  252 (309)
                                         +++.       +..-|+.+. .|+.|+|++    .||=-+|.|+-..++++++++.|.|||
T Consensus       124 ~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgG  203 (288)
T KOG2899|consen  124 FGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGG  203 (288)
T ss_pred             cccccccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCc
Confidence                               0122       222234433 455688775    344457999999999999999999999


Q ss_pred             EEEEe
Q 021707          253 KLIAC  257 (309)
Q Consensus       253 ~l~i~  257 (309)
                      .|++-
T Consensus       204 iLvvE  208 (288)
T KOG2899|consen  204 ILVVE  208 (288)
T ss_pred             EEEEc
Confidence            66553

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.69  E-value=5.7e-08  Score=83.34  Aligned_cols=86  Identities=17%  Similarity=0.305  Sum_probs=66.9

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC---CCC--CceeeehhhhhcCC
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS---IPA--ANAIFMKWVLATWT  233 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~---~p~--~D~i~~~~vlh~~~  233 (309)
                      ...+|||||||+|.++..+++. ...+ ++++|. +.+++.+++ .+++++.+|+.+.   ++.  .|+|++++++|+++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~-~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~   89 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE-KQVR-GYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR   89 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCc-EEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence            4568999999999999888766 3567 899998 667766643 4688888888652   333  49999999999998


Q ss_pred             hhHHHHHHHHHHHhcCC
Q 021707          234 DDECKLIMENCYKALLA  250 (309)
Q Consensus       234 d~~~~~iL~~~~~aL~p  250 (309)
                      +.  .++|+++.+.+++
T Consensus        90 d~--~~~l~e~~r~~~~  104 (194)
T TIGR02081        90 NP--EEILDEMLRVGRH  104 (194)
T ss_pred             CH--HHHHHHHHHhCCe
Confidence            75  4788888887653

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.68  E-value=5.8e-08  Score=95.08  Aligned_cols=95  Identities=19%  Similarity=0.174  Sum_probs=73.3

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC--Cceeeehh--h
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA--ANAIFMKW--V  228 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~--~D~i~~~~--v  228 (309)
                      ..+|||+|||+|.++..+++.+|+.+ ++++|. +.+++.++++       ++++++.+|+++..+.  .|+|+++-  +
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~-v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi  217 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNAN-VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYI  217 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCC
Confidence            46899999999999999999999999 999998 6777777642       5899999999876543  49999731  1


Q ss_pred             h------------hcCCh----------hHHHHHHHHHHHhcCCCcEEEE
Q 021707          229 L------------ATWTD----------DECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       229 l------------h~~~d----------~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                      -            .+.|.          +-..++++++.+.|+|||.+++
T Consensus       218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l  267 (506)
T PRK01544        218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL  267 (506)
T ss_pred             CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence            1            11111          1245688899999999998875

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.68  E-value=6.8e-08  Score=86.29  Aligned_cols=93  Identities=20%  Similarity=0.181  Sum_probs=67.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCCCceeeehhhhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPAANAIFMKWVLA  230 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~~D~i~~~~vlh  230 (309)
                      ....+|+|||||+|.++..+++..+ .+ ++++|. |.+++.++++       +++++..+|.     ..|+|+++... 
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~-v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~~-  189 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGA-KK-VLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANILA-  189 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCC-Ce-EEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCcH-
Confidence            3567999999999999998776554 36 999998 6777776653       2344433332     35998875332 


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                          +....+++++.+.|+|||++++......+
T Consensus       190 ----~~~~~l~~~~~~~LkpgG~lilsgi~~~~  218 (250)
T PRK00517        190 ----NPLLELAPDLARLLKPGGRLILSGILEEQ  218 (250)
T ss_pred             ----HHHHHHHHHHHHhcCCCcEEEEEECcHhh
Confidence                23467899999999999999998766543

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.68  E-value=6.8e-08  Score=91.27  Aligned_cols=99  Identities=18%  Similarity=0.195  Sum_probs=74.1

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC---Cceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA---ANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~---~D~i~~~~vl  229 (309)
                      +..+|+|+|||+|.++..+++.+|+.+ ++++|. +.+++.++++     .+++++.+|+++. .|.   .|+|+++-.-
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~-VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY  329 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAF-VRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY  329 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence            446899999999999999999999999 999999 7788777653     4799999999875 332   4999985321


Q ss_pred             hcC---------------------Ch--hHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          230 ATW---------------------TD--DECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       230 h~~---------------------~d--~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      ..-                     .+  +-..++++.+.+.|+|||.++ +|.-
T Consensus       330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li-lEiG  382 (423)
T PRK14966        330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL-LEHG  382 (423)
T ss_pred             CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE-EEEC
Confidence            100                     00  123478888889999999865 4443

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.68  E-value=2e-07  Score=79.76  Aligned_cols=106  Identities=16%  Similarity=0.158  Sum_probs=76.5

Q ss_pred             CCCcc-eEEEecCCccHHHHHHHHhcCCCceEEEeech-----hHHhhCCC--CCCc-eEEeCCCCCC---CC-------
Q 021707          158 FKGVK-RLVDVGGSAGDCLRMILQKHHFICEGINFDLP-----EVVGEAPS--IPGV-THIGGDMFNS---IP-------  218 (309)
Q Consensus       158 ~~~~~-~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-----~~~~~a~~--~~ri-~~~~~d~~~~---~p-------  218 (309)
                      ++... +||+||+|+|.++..+++++|+++ ----|..     .+.+-+.+  .+++ .-+..|..++   ++       
T Consensus        22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~-WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~  100 (204)
T PF06080_consen   22 LPDSGTRVLEIASGTGQHAVYFAQALPHLT-WQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSP  100 (204)
T ss_pred             hCccCceEEEEcCCccHHHHHHHHHCCCCE-EcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCC
Confidence            33444 599999999999999999999987 5444441     22221111  1221 1222344333   21       


Q ss_pred             C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          219 A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       219 ~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      . .|+|++.+++|-.+-+.+..+++.+.+.|+|||.|+++-++.-+.
T Consensus       101 ~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G  147 (204)
T PF06080_consen  101 ESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDG  147 (204)
T ss_pred             CCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCC
Confidence            2 399999999999999999999999999999999999999998774

The function of this family is unknown.

>PRK00811 spermidine synthase; Provisional

Probab=98.65  E-value=7.8e-08  Score=87.47  Aligned_cols=98  Identities=23%  Similarity=0.272  Sum_probs=73.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----------CCCceEEeCCCCCCC---CC-Cce
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----------IPGVTHIGGDMFNSI---PA-ANA  222 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----------~~ri~~~~~d~~~~~---p~-~D~  222 (309)
                      +++.+||+||||.|..+.+++++.+..+ ++++|+ +.+++.+++           .+|++++.+|..+..   ++ .|+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence            4567999999999999999997644556 999999 677777654           368999999987642   22 499


Q ss_pred             eeehhhhhcCChh--HHHHHHHHHHHhcCCCcEEEEe
Q 021707          223 IFMKWVLATWTDD--ECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       223 i~~~~vlh~~~d~--~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      |++-..-+.-+..  -..++++.+++.|+|||.+++.
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9975432222222  1367899999999999988875

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.62  E-value=1.5e-07  Score=81.64  Aligned_cols=91  Identities=19%  Similarity=0.203  Sum_probs=69.3

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeC-------CCCCCC--CCC-ceeeehhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGG-------DMFNSI--PAA-NAIFMKWVL  229 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~-------d~~~~~--p~~-D~i~~~~vl  229 (309)
                      ...++|||||+|..+..+++.|.+   +++.|. +.++..++++++++....       ++....  ++. |+|++...+
T Consensus        34 h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   34 HRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV  110 (261)
T ss_pred             cceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence            348999999999888888877655   999998 789999998766555432       222222  344 999999999


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCc-EEEEe
Q 021707          230 ATWTDDECKLIMENCYKALLAGG-KLIAC  257 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG-~l~i~  257 (309)
                      |-|.-+   ++.++++++|+++| .+.+.
T Consensus       111 HWFdle---~fy~~~~rvLRk~Gg~iavW  136 (261)
T KOG3010|consen  111 HWFDLE---RFYKEAYRVLRKDGGLIAVW  136 (261)
T ss_pred             HhhchH---HHHHHHHHHcCCCCCEEEEE
Confidence            988655   89999999999766 44443

>PHA03411 putative methyltransferase; Provisional

Probab=98.61  E-value=1.6e-07  Score=84.10  Aligned_cols=96  Identities=11%  Similarity=0.115  Sum_probs=76.1

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCCC-CC-CceeeehhhhhcCChhH
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNSI-PA-ANAIFMKWVLATWTDDE  236 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~~-p~-~D~i~~~~vlh~~~d~~  236 (309)
                      ..+|||+|||+|.++..++++.+..+ ++++|. +.+++.++++ ++++++.+|+++.. +. .|+|+++-..++.+..+
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~-V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d  143 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEK-IVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD  143 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence            46899999999999999999887788 999998 7788877664 78999999998753 23 59999987776654321


Q ss_pred             ------------------HHHHHHHHHHhcCCCcEEEEe
Q 021707          237 ------------------CKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       237 ------------------~~~iL~~~~~aL~pgG~l~i~  257 (309)
                                        ..+.++.....|+|+|.++++
T Consensus       144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~  182 (279)
T PHA03411        144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA  182 (279)
T ss_pred             hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence                              245677778888999977665

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.60  E-value=9.6e-07  Score=78.89  Aligned_cols=100  Identities=21%  Similarity=0.267  Sum_probs=81.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCC--CceEEEeec-hhHHhhCCC------CCC-ceEEeCCCCCC------CCCCce
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHF--ICEGINFDL-PEVVGEAPS------IPG-VTHIGGDMFNS------IPAANA  222 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-p~~~~~a~~------~~r-i~~~~~d~~~~------~p~~D~  222 (309)
                      ..+.+||||.||+|.+....++.+|.  .+ +...|. |..++..++      ... ++|..+|.|+.      .|..++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~-i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l  212 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDS-ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL  212 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCce-EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence            35789999999999999999999998  56 899998 555555543      244 49999999975      233499


Q ss_pred             eeehhhhhcCChhH-HHHHHHHHHHhcCCCcEEEEecc
Q 021707          223 IFMKWVLATWTDDE-CKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       223 i~~~~vlh~~~d~~-~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ++.+-....|+|.+ +.+.|+.+++++.|||.++-.-.
T Consensus       213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ  250 (311)
T PF12147_consen  213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ  250 (311)
T ss_pred             EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence            99999999999987 44579999999999998877643

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.60  E-value=1.6e-07  Score=86.66  Aligned_cols=101  Identities=17%  Similarity=0.266  Sum_probs=74.8

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIPA-  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p~-  219 (309)
                      ..+++.++ .++..+|||||||+|.++..+++.++. .+ ++++|. +.+++.+++      .++++++.+|..+..+. 
T Consensus        70 a~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~-VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~  147 (322)
T PRK13943         70 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEF  147 (322)
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccccc
Confidence            34455554 566789999999999999999998864 46 899998 677766654      26799999998765332 


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                        .|+|++...++..+        ..+.+.|+|||++++...
T Consensus       148 ~~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        148 APYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             CCccEEEECCchHHhH--------HHHHHhcCCCCEEEEEeC
Confidence              49999876554433        346678999999888543

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.58  E-value=2.9e-07  Score=83.48  Aligned_cols=97  Identities=19%  Similarity=0.140  Sum_probs=76.3

Q ss_pred             cceEEEecCCccH----HHHHHHHhcC----CCceEEEeec-hhHHhhCCCC----------------------------
Q 021707          161 VKRLVDVGGSAGD----CLRMILQKHH----FICEGINFDL-PEVVGEAPSI----------------------------  203 (309)
Q Consensus       161 ~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~~D~-p~~~~~a~~~----------------------------  203 (309)
                      ..+|...||++|.    +++.+.+..+    +.+ +++.|+ +.+++.|++.                            
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~-I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWK-VFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcE-EEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            4799999999997    4444445433    356 899998 5566555320                            


Q ss_pred             ---------CCceEEeCCCCCC-CC--C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          204 ---------PGVTHIGGDMFNS-IP--A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       204 ---------~ri~~~~~d~~~~-~p--~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                               .+|+|..+|..++ +|  . .|+|+|++++.+|+++...+++++++++|+|||.|++..
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence                     4689999999884 44  3 499999999999999999999999999999999988765

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=4.1e-07  Score=77.99  Aligned_cols=100  Identities=18%  Similarity=0.225  Sum_probs=80.3

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC-
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA-  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~-  219 (309)
                      ...+++.++ .+...+||+||||+|..+.-+++.--  + ++.+|. +...+.|+++      .+|+++.+|-..-+|+ 
T Consensus        61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~-V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~  136 (209)
T COG2518          61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--R-VVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEE  136 (209)
T ss_pred             HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--e-EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCC
Confidence            345677775 88889999999999999999988765  5 899998 7777777653      6799999999887776 


Q ss_pred             C--ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          220 A--NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       220 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      +  |.|+..-..-..|+.        +.+.|+|||++++-..
T Consensus       137 aPyD~I~Vtaaa~~vP~~--------Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         137 APYDRIIVTAAAPEVPEA--------LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCcCEEEEeeccCCCCHH--------HHHhcccCCEEEEEEc
Confidence            3  999988776656654        5567999999998766

>PLN02366 spermidine synthase

Probab=98.56  E-value=2.3e-07  Score=85.15  Aligned_cols=100  Identities=22%  Similarity=0.208  Sum_probs=72.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CC-C-Cc
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IP-A-AN  221 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p-~-~D  221 (309)
                      .+++.+||+||||.|..+.+++++ |...+++++|+ +.+++.+++          .+|++++.+|.++.   .+ + .|
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence            345789999999999999999866 65433999998 557776654          26999999997543   33 2 49


Q ss_pred             eeeehhhhhcCChh--HHHHHHHHHHHhcCCCcEEEEec
Q 021707          222 AIFMKWVLATWTDD--ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       222 ~i~~~~vlh~~~d~--~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +|++-..-+.-+..  -..++++.+++.|+|||.+++.-
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            99874322221211  13578999999999999987643

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.54  E-value=6.2e-07  Score=79.30  Aligned_cols=99  Identities=14%  Similarity=0.130  Sum_probs=75.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC---------CC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI---------PA  219 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~---------p~  219 (309)
                      ..+..+|||||||+|..+..+++..| +.+ ++.+|. ++.++.++++       ++|+++.+|..+.+         +.
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~-v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~  144 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGR-ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE  144 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence            34578999999999999999998865 567 999998 6666666542       68999999997631         12


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      .|+|++-     -....-...+..+.+.|+|||.|++-+.++.
T Consensus       145 fD~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~  182 (234)
T PLN02781        145 FDFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDNTLWF  182 (234)
T ss_pred             CCEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEcCCcC
Confidence            4998873     2334556889999999999998777655543

>PRK01581 speE spermidine synthase; Validated

Probab=98.54  E-value=2.5e-07  Score=85.84  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=74.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------------CCCceEEeCCCCCCC---CC-
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------------IPGVTHIGGDMFNSI---PA-  219 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------------~~ri~~~~~d~~~~~---p~-  219 (309)
                      ..++.+||+||||.|..+.++++..+..+ ++++|+ |.|++.+++             .+|++++.+|..+..   +. 
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~-It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~  226 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLH-VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL  226 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence            34567999999999999999997655567 999999 778887763             279999999987642   22 


Q ss_pred             Cceeeehhhhh---cCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          220 ANAIFMKWVLA---TWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       220 ~D~i~~~~vlh---~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      .|+|++-..-.   .....-..++++.+++.|+|||.+++..
T Consensus       227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            49999763110   0111223678999999999999988773

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.53  E-value=9.2e-08  Score=82.97  Aligned_cols=103  Identities=17%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP  218 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p  218 (309)
                      ....+++.++ ..+..+|||||||+|.++..++.... .-+ ++.+|. +.+++.++++      .+|+++.+|....+|
T Consensus        60 ~~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~-Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~  137 (209)
T PF01135_consen   60 MVARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGR-VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP  137 (209)
T ss_dssp             HHHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEE-EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG
T ss_pred             HHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccce-EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc
Confidence            3455777876 88889999999999999999998753 445 889997 7777777653      689999999877665


Q ss_pred             C---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          219 A---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       219 ~---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      .   .|.|++.......|..        +.+.|++||++++--.
T Consensus       138 ~~apfD~I~v~~a~~~ip~~--------l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  138 EEAPFDRIIVTAAVPEIPEA--------LLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             GG-SEEEEEESSBBSS--HH--------HHHTEEEEEEEEEEES
T ss_pred             cCCCcCEEEEeeccchHHHH--------HHHhcCCCcEEEEEEc
Confidence            4   3999998877555432        5667999999997533

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.52  E-value=1.9e-07  Score=81.65  Aligned_cols=102  Identities=18%  Similarity=0.162  Sum_probs=79.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC----C--------------CCCceEEeCCCCCCCC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP----S--------------IPGVTHIGGDMFNSIP  218 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~----~--------------~~ri~~~~~d~~~~~p  218 (309)
                      .....+||+.|||.|.-+..|+++  +.+ ++++|+ +..++.+.    .              ..+|++.++|+|+.-+
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~  111 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP  111 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence            456679999999999999999987  457 999999 45565541    0              1578999999998533


Q ss_pred             C----CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          219 A----ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       219 ~----~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      .    .|+|+=...++-++++...+-.+.+++.|+|||+++++-...+
T Consensus       112 ~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~  159 (218)
T PF05724_consen  112 EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYP  159 (218)
T ss_dssp             SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-
T ss_pred             hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcC
Confidence            2    4999999999999999999999999999999999554444433

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=3e-07  Score=83.42  Aligned_cols=99  Identities=20%  Similarity=0.269  Sum_probs=74.4

Q ss_pred             eEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC-Cceeeeh--hhhhc-
Q 021707          163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA-ANAIFMK--WVLAT-  231 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~-~D~i~~~--~vlh~-  231 (309)
                      +|+|+|||+|..++.++.++|+.+ +++.|+ |..++.|+++      .++.++.+|+|+..++ .|+|+++  ++-.. 
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~-V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~  191 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAE-VIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAED  191 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCe-EEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCcc
Confidence            799999999999999999999999 999999 7788777653      5567777799988665 5988865  22221 


Q ss_pred             ----------------CCh----hHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          232 ----------------WTD----DECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       232 ----------------~~d----~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                                      +..    +-..+++.++.+.|+|||.+ ++|.-...
T Consensus       192 ~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l-~le~g~~q  242 (280)
T COG2890         192 PELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVL-ILEIGLTQ  242 (280)
T ss_pred             cccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEE-EEEECCCc
Confidence                            000    24678899999999997754 45544443

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.51  E-value=1.6e-06  Score=77.84  Aligned_cols=99  Identities=17%  Similarity=0.193  Sum_probs=81.8

Q ss_pred             CcceEEEecCCccH----HHHHHHHhcCC-----CceEEEeec-hhHHhhCCCC--------------------------
Q 021707          160 GVKRLVDVGGSAGD----CLRMILQKHHF-----ICEGINFDL-PEVVGEAPSI--------------------------  203 (309)
Q Consensus       160 ~~~~vlDvG~G~G~----~~~~l~~~~p~-----~~~~~~~D~-p~~~~~a~~~--------------------------  203 (309)
                      +.-+|.-.||++|.    +++.+.+.+|.     .+ +++-|+ ..+++.|+..                          
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~-I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~  174 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVK-ILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG  174 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceE-EEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence            46799999999996    67777778863     56 899998 5677766530                          


Q ss_pred             ---------CCceEEeCCCCCCC--CC-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          204 ---------PGVTHIGGDMFNSI--PA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       204 ---------~ri~~~~~d~~~~~--p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                               ..|.|..+|.+++.  ++ .|+|+|+|||-+|+.+...+++++.+..|+|||.|+|-..
T Consensus       175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s  242 (268)
T COG1352         175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS  242 (268)
T ss_pred             cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence                     35899999998874  33 4999999999999999999999999999999999998753

>TIGR00417 speE spermidine synthase

Probab=98.50  E-value=2.8e-07  Score=83.33  Aligned_cols=98  Identities=21%  Similarity=0.208  Sum_probs=72.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC-Ccee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA-ANAI  223 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~-~D~i  223 (309)
                      +++.+||+||||+|..+.+++++.+..+ ++++|. +.+++.+++          .+|++++.+|.++.   .++ .|+|
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI  149 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI  149 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcce-EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence            3456999999999999999998765667 999998 566666544          26889999888653   233 4999


Q ss_pred             eehhhhhcCChhH--HHHHHHHHHHhcCCCcEEEEe
Q 021707          224 FMKWVLATWTDDE--CKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       224 ~~~~vlh~~~d~~--~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ++...-+.-+...  ..+.++++++.|+|||.+++.
T Consensus       150 i~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       150 IVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            9765432222222  468899999999999998886

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.48  E-value=4.2e-07  Score=76.86  Aligned_cols=83  Identities=19%  Similarity=0.390  Sum_probs=64.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hh-HHhhCCCCCCceEEeCCCCCC---CCC--Cceeeehhhhhc
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PE-VVGEAPSIPGVTHIGGDMFNS---IPA--ANAIFMKWVLAT  231 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~-~~~~a~~~~ri~~~~~d~~~~---~p~--~D~i~~~~vlh~  231 (309)
                      +.+.+|||+|||.|.++..|.+. .+++ +.++|+ ++ +.+..+  ..+.++.+|+.+.   +|.  .|.|+++.+|..
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~-g~GvEid~~~v~~cv~--rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~   87 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE-KQVD-GYGVEIDPDNVAACVA--RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA   87 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh-cCCe-EEEEecCHHHHHHHHH--cCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence            45689999999999999888876 5888 999998 33 333332  5788999998765   554  399999999998


Q ss_pred             CChhHHHHHHHHHHHh
Q 021707          232 WTDDECKLIMENCYKA  247 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~a  247 (309)
                      ....+  ++|+++.++
T Consensus        88 ~~~P~--~vL~EmlRV  101 (193)
T PF07021_consen   88 VRRPD--EVLEEMLRV  101 (193)
T ss_pred             HhHHH--HHHHHHHHh
Confidence            87764  778887766

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.47  E-value=1.1e-06  Score=81.59  Aligned_cols=105  Identities=15%  Similarity=0.046  Sum_probs=75.6

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC--C
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA--A  220 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~--~  220 (309)
                      ++.... ++.+.+|+|+|||+|.++.+.+..  ..+ ++++|. +.++..++++      ..+++..+|+.+. .+.  .
T Consensus       174 ~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~-v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~  249 (329)
T TIGR01177       174 MVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAK-VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESV  249 (329)
T ss_pred             HHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCe-EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCC
Confidence            344443 667789999999999999887653  567 999998 6677765542      4488999999864 322  4


Q ss_pred             ceeeehhhhh-------cCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          221 NAIFMKWVLA-------TWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       221 D~i~~~~vlh-------~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      |+|++.-...       +...+-..++|+++++.|+|||++++.-+
T Consensus       250 D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~  295 (329)
T TIGR01177       250 DAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP  295 (329)
T ss_pred             CEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence            9999852211       11123357899999999999999988754

This family is found exclusively in the Archaea.

>PRK03612 spermidine synthase; Provisional

Probab=98.46  E-value=5e-07  Score=88.92  Aligned_cols=98  Identities=21%  Similarity=0.198  Sum_probs=74.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCC-------------CCCceEEeCCCCCC---CCC-
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPS-------------IPGVTHIGGDMFNS---IPA-  219 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~-------------~~ri~~~~~d~~~~---~p~-  219 (309)
                      +++.+|||||||+|..+.++++ +|. .+ ++++|+ |++++.+++             .+|++++.+|.++.   .++ 
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~  373 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK  373 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence            4568999999999999999997 465 56 999999 788888765             16899999998763   333 


Q ss_pred             CceeeehhhhhcCChh---HHHHHHHHHHHhcCCCcEEEEec
Q 021707          220 ANAIFMKWVLATWTDD---ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~---~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      .|+|++...-+..+..   -..++++++++.|+|||.+++.-
T Consensus       374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            4999986432221111   12468999999999999988764

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.45  E-value=2.5e-07  Score=79.53  Aligned_cols=94  Identities=19%  Similarity=0.354  Sum_probs=66.9

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------CCCCceEEeCCCCCC----CC-CC-ceeeehhh
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------SIPGVTHIGGDMFNS----IP-AA-NAIFMKWV  228 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------~~~ri~~~~~d~~~~----~p-~~-D~i~~~~v  228 (309)
                      ..+||||||.|.++..+++.+|+.. .+++|. ...+..+.      ...++.++++|....    ++ .. |-|++.+.
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n-~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDIN-FIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSE-EEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCC-EEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            4899999999999999999999999 999998 34443332      248999999998763    34 33 65555432


Q ss_pred             hhcCChh-------HHHHHHHHHHHhcCCCcEEEEe
Q 021707          229 LATWTDD-------ECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       229 lh~~~d~-------~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      = -|+..       -...+|+.+++.|+|||.|.+.
T Consensus        98 D-PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~  132 (195)
T PF02390_consen   98 D-PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA  132 (195)
T ss_dssp             -----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             C-CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE
Confidence            1 13321       1457999999999999988765

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.44  E-value=6.3e-07  Score=75.15  Aligned_cols=102  Identities=12%  Similarity=0.210  Sum_probs=69.6

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC--C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA--A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~--~  220 (309)
                      +.+++.++ +....+|+|||||+|.++..++++  ..+ ++++|. +.+++.+++    .++++++.+|+.+. .+.  .
T Consensus         3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~-v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~   78 (169)
T smart00650        3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AAR-VTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP   78 (169)
T ss_pred             HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCe-EEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence            45666665 667789999999999999999988  456 999998 556666544    36899999999875 443  3


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhc--CCCcEEEEecc
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKAL--LAGGKLIACEP  259 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL--~pgG~l~i~e~  259 (309)
                      |.|+.+ ..++...    .++.++.+..  .++|.+++-..
T Consensus        79 d~vi~n-~Py~~~~----~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       79 YKVVGN-LPYNIST----PILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             CEEEEC-CCcccHH----HHHHHHHhcCCCcceEEEEEEHH
Confidence            777654 4444443    3444444332  35666655443

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.44  E-value=9.6e-07  Score=75.48  Aligned_cols=125  Identities=14%  Similarity=0.149  Sum_probs=73.0

Q ss_pred             hhhcCchHHHHH----HHHhhcCCcccHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhC
Q 021707          125 YYGKMPEMNGLM----RRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEA  200 (309)
Q Consensus       125 ~~~~~~~~~~~f----~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a  200 (309)
                      .+.++|+....|    ++.+..|...-.+.+++.+...++...|.|.|||.+.++..+..   ..+ +..+|+-..    
T Consensus        33 lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~-V~SfDLva~----  104 (219)
T PF05148_consen   33 LFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHK-VHSFDLVAP----  104 (219)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S----
T ss_pred             HHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---Cce-EEEeeccCC----
Confidence            345566555544    44444444444666777775345567999999999999976542   346 889998431    


Q ss_pred             CCCCCceEEeCCCCC-CCCC-C-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          201 PSIPGVTHIGGDMFN-SIPA-A-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       201 ~~~~ri~~~~~d~~~-~~p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                        ++  .+.+.|+.+ |++. . |++++.-.|-   ..+....|+++.|.|+|||.|.|.|....-.
T Consensus       105 --n~--~Vtacdia~vPL~~~svDv~VfcLSLM---GTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~  164 (219)
T PF05148_consen  105 --NP--RVTACDIANVPLEDESVDVAVFCLSLM---GTNWPDFIREANRVLKPGGILKIAEVKSRFE  164 (219)
T ss_dssp             --ST--TEEES-TTS-S--TT-EEEEEEES------SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S
T ss_pred             --CC--CEEEecCccCcCCCCceeEEEEEhhhh---CCCcHHHHHHHHheeccCcEEEEEEecccCc
Confidence              23  356678855 3544 3 9988877763   2345689999999999999999999765443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.43  E-value=1.3e-06  Score=83.97  Aligned_cols=111  Identities=16%  Similarity=0.176  Sum_probs=79.8

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC---CC-C-
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS---IP-A-  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~---~p-~-  219 (309)
                      +...++ ...+.+|||+|||+|..+..+++..++.+ ++++|. +.+++.++++     -+++++.+|..+.   .+ . 
T Consensus       236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~  313 (427)
T PRK10901        236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQ-VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP  313 (427)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence            344554 55678999999999999999999998777 999998 6777766543     3478999999764   22 2 


Q ss_pred             Cceeeehh------hhh-------cCChhH-------HHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 ANAIFMKW------VLA-------TWTDDE-------CKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 ~D~i~~~~------vlh-------~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      .|.|++.-      ++.       .+..++       ..++|+++.+.|+|||++++.......
T Consensus       314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~  377 (427)
T PRK10901        314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILP  377 (427)
T ss_pred             CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            49988422      111       112221       357999999999999999988754443

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.42  E-value=3.8e-07  Score=75.90  Aligned_cols=74  Identities=19%  Similarity=0.271  Sum_probs=60.1

Q ss_pred             EEeec-hhHHhhCCCC---------CCceEEeCCCCCC-CCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEE
Q 021707          189 INFDL-PEVVGEAPSI---------PGVTHIGGDMFNS-IPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       189 ~~~D~-p~~~~~a~~~---------~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      +++|. +.|++.++++         .+|+++.+|..+. ++.  .|+|++.+++|+++|.  .++|++++++|+|||+++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~   78 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVS   78 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEE
Confidence            46787 6788776431         4699999999764 444  3999999999999866  589999999999999999


Q ss_pred             EeccccCCC
Q 021707          256 ACEPVLLDD  264 (309)
Q Consensus       256 i~e~~~~~~  264 (309)
                      |.|...+++
T Consensus        79 i~d~~~~~~   87 (160)
T PLN02232         79 ILDFNKSNQ   87 (160)
T ss_pred             EEECCCCCh
Confidence            999986654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.42  E-value=1.8e-06  Score=83.58  Aligned_cols=106  Identities=17%  Similarity=0.165  Sum_probs=76.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--Cceeeeh-
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--ANAIFMK-  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--~D~i~~~-  226 (309)
                      ...+.+|||+|||+|..+..+++..+ ..+ ++++|. +.+++.++++      .+|+++.+|+.+..+.  .|+|++- 
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~  326 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQ-ITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDA  326 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcC
Confidence            44567999999999999998888764 356 999998 6677666542      5689999998765333  4998851 


Q ss_pred             -----hhh-------hcCChhH-------HHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          227 -----WVL-------ATWTDDE-------CKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       227 -----~vl-------h~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                           .++       +.++.++       -.++|+++++.|+|||+++.........
T Consensus       327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~  383 (445)
T PRK14904        327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPE  383 (445)
T ss_pred             CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence                 111       1233332       2469999999999999999887665443

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.40  E-value=1.5e-06  Score=84.06  Aligned_cols=108  Identities=14%  Similarity=0.108  Sum_probs=77.2

Q ss_pred             HhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCC-
Q 021707          152 LDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPA-  219 (309)
Q Consensus       152 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~-  219 (309)
                      ...++ ..++.+|+|+|||+|..+..+++.. ++.+ ++++|. +..++.++++      .+|+++.+|+.+.   ++. 
T Consensus       243 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~  320 (444)
T PRK14902        243 APALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGK-VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEK  320 (444)
T ss_pred             HHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhccc
Confidence            34443 5566899999999999999999986 6678 999999 6666665442      4699999998764   333 


Q ss_pred             Cceeeehhh------hh-------cCChhH-------HHHHHHHHHHhcCCCcEEEEecccc
Q 021707          220 ANAIFMKWV------LA-------TWTDDE-------CKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       220 ~D~i~~~~v------lh-------~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      .|+|++.--      +.       .+...+       ..++|+++.+.|+|||+++......
T Consensus       321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            599986321      11       112222       2468999999999999998765443

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.40  E-value=1.2e-06  Score=84.38  Aligned_cols=114  Identities=16%  Similarity=0.157  Sum_probs=81.3

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------C-CceEEeCCCCCCC---C-
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------P-GVTHIGGDMFNSI---P-  218 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~-ri~~~~~d~~~~~---p-  218 (309)
                      +...++ ...+.+|+|+|||+|..+..+++..++.+ ++++|. +..++.++++      . +++++.+|.....   + 
T Consensus       230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~-v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~  307 (426)
T TIGR00563       230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQ-VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN  307 (426)
T ss_pred             HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence            444554 55678999999999999999999988777 999998 6677666542      1 3444777776431   2 


Q ss_pred             C-Cceeee------hhhhhcCCh-------h-------HHHHHHHHHHHhcCCCcEEEEeccccCCCCC
Q 021707          219 A-ANAIFM------KWVLATWTD-------D-------ECKLIMENCYKALLAGGKLIACEPVLLDDSN  266 (309)
Q Consensus       219 ~-~D~i~~------~~vlh~~~d-------~-------~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~  266 (309)
                      . .|.|++      ..+++..|+       +       ...++|+++++.|+|||+++..........+
T Consensus       308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~En  376 (426)
T TIGR00563       308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEEN  376 (426)
T ss_pred             cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhC
Confidence            2 499885      245554443       1       1368999999999999999998776654433

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.39  E-value=8.1e-07  Score=82.34  Aligned_cols=117  Identities=16%  Similarity=0.230  Sum_probs=77.4

Q ss_pred             HHHHHHHhhcCCcccHHHHHhhcC----CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----
Q 021707          133 NGLMRRAISGVSVPFMTSVLDSYN----GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----  203 (309)
Q Consensus       133 ~~~f~~~m~~~~~~~~~~~~~~~~----~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----  203 (309)
                      .+.|+.++.       ..++..+-    .-....+|||+|||.|.-+.--...  +.+..+++|+ +..+++|+++    
T Consensus        38 lR~fNNwvK-------s~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~  108 (331)
T PF03291_consen   38 LRNFNNWVK-------SVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQL  108 (331)
T ss_dssp             HHHHHHHHH-------HHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHH
T ss_pred             HHHHhHHHH-------HHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence            467777665       23333331    0115689999999988866555544  3334899998 4455554321    


Q ss_pred             ------------CCceEEeCCCCCC-----C-CC---CceeeehhhhhcC--ChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          204 ------------PGVTHIGGDMFNS-----I-PA---ANAIFMKWVLATW--TDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       204 ------------~ri~~~~~d~~~~-----~-p~---~D~i~~~~vlh~~--~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                                  -...++.+|.+..     + +.   .|+|-+.+.+|+.  +++.+..+|+++.+.|+|||.++..-
T Consensus       109 ~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  109 KKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT  186 (331)
T ss_dssp             HTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence                        2357788888753     2 22   3999999999984  56678889999999999999998763

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.32  E-value=1.6e-06  Score=74.88  Aligned_cols=112  Identities=19%  Similarity=0.314  Sum_probs=68.2

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC---------------CCCCceEEeCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP---------------SIPGVTHIGGD  212 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~---------------~~~ri~~~~~d  212 (309)
                      ..+++.+. ......++|+|||.|......+..++--+ ++++++ +...+.+.               +..++++..+|
T Consensus        32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~-~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKK-SVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SE-EEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcE-EEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            44566664 77778999999999999988887765444 999998 33332221               12678999999


Q ss_pred             CCCC------CCCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          213 MFNS------IPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       213 ~~~~------~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      +.+.      +..+|+|++++.+  |+++- ..-|++....|+||.+++-...+.+...
T Consensus       110 fl~~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~G~~IIs~~~~~~~~~  165 (205)
T PF08123_consen  110 FLDPDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKPGARIISTKPFCPRRR  165 (205)
T ss_dssp             TTTHHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-TT-EEEESS-SS-TT-
T ss_pred             ccccHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCCCCEEEECCCcCCCCc
Confidence            9874      2457999999875  55554 4555778888999999998888877653

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=2.5e-06  Score=77.28  Aligned_cols=96  Identities=20%  Similarity=0.181  Sum_probs=66.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCce----EEeCCCCCCCC--CCceeeehhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVT----HIGGDMFNSIP--AANAIFMKWV  228 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~----~~~~d~~~~~p--~~D~i~~~~v  228 (309)
                      .++.+|+|||||+|-++++.++... .+ ++++|+ |..+..++++   .++.    ....+..+...  .+|+|+.+-.
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLGA-~~-v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL  238 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLGA-KK-VVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL  238 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcCC-ce-EEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence            4678999999999999999998753 34 899999 6667766654   3343    22233322222  2599887653


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      -     +-.+++...+++.++|||++++.-.+-
T Consensus       239 A-----~vl~~La~~~~~~lkpgg~lIlSGIl~  266 (300)
T COG2264         239 A-----EVLVELAPDIKRLLKPGGRLILSGILE  266 (300)
T ss_pred             H-----HHHHHHHHHHHHHcCCCceEEEEeehH
Confidence            2     123588899999999999888876443

>PHA03412 putative methyltransferase; Provisional

Probab=98.30  E-value=3e-06  Score=74.28  Aligned_cols=95  Identities=14%  Similarity=0.089  Sum_probs=69.0

Q ss_pred             cceEEEecCCccHHHHHHHHhcC---CCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC-CceeeehhhhhcCC
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHH---FICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA-ANAIFMKWVLATWT  233 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~~  233 (309)
                      ..+|||+|||+|.++..++++++   ..+ ++++|+ +.+++.++++ .+++++.+|+.+. .+. .|+|+++--.+...
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIK  128 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence            57999999999999999998753   567 999999 6778888765 7799999999764 333 59999875554221


Q ss_pred             --h--------hHHHHHHHHHHHhcCCCcEEEEe
Q 021707          234 --D--------DECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       234 --d--------~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                        +        .-..++++++.+.++| |.+++=
T Consensus       129 ~~d~~ar~~g~~~~~~li~~A~~Ll~~-G~~ILP  161 (241)
T PHA03412        129 TSDFKGKYTGAEFEYKVIERASQIARQ-GTFIIP  161 (241)
T ss_pred             ccccCCcccccHHHHHHHHHHHHHcCC-CEEEeC
Confidence              1        1134588888884454 455443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.29  E-value=3.5e-06  Score=81.22  Aligned_cols=110  Identities=14%  Similarity=0.078  Sum_probs=79.2

Q ss_pred             HhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC------
Q 021707          152 LDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI------  217 (309)
Q Consensus       152 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~------  217 (309)
                      ...++ ...+.+|+|+|||+|..+..+++... ..+ ++++|. +..++.++++      .+|+++.+|..+..      
T Consensus       245 ~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~  322 (434)
T PRK14901        245 APLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGE-IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW  322 (434)
T ss_pred             HHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence            34453 55678999999999999999999864 457 999998 6677666542      56899999986532      


Q ss_pred             CC-Cceeeeh------hhhhcCCh-------hH-------HHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          218 PA-ANAIFMK------WVLATWTD-------DE-------CKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       218 p~-~D~i~~~------~vlh~~~d-------~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      ++ +|.|++-      .+++..++       ++       ..++|+++.+.|+|||+|+.....+..
T Consensus       323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~  389 (434)
T PRK14901        323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP  389 (434)
T ss_pred             cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            12 4999862      34443332       22       368999999999999999887755443

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.28  E-value=2.1e-06  Score=77.47  Aligned_cols=103  Identities=23%  Similarity=0.372  Sum_probs=75.6

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhH-HhhCCCC--------C----CceEEeCCCCCC-
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEV-VGEAPSI--------P----GVTHIGGDMFNS-  216 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~-~~~a~~~--------~----ri~~~~~d~~~~-  216 (309)
                      ++..+  .+....++|+|||-|.-++.--++.  ....+++|+.+| +++++++        .    .+.|+++|-+.. 
T Consensus       110 LI~~y--~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~  185 (389)
T KOG1975|consen  110 LINLY--TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKER  185 (389)
T ss_pred             HHHHH--hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhH
Confidence            44444  3456789999999998777665542  223799999654 6666542        2    468889987742 


Q ss_pred             --------CCCCceeeehhhhhc-C-ChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          217 --------IPAANAIFMKWVLAT-W-TDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       217 --------~p~~D~i~~~~vlh~-~-~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                              .|..|+|-+.+++|+ | +.+.+..+|+++.+.|+|||.++-.
T Consensus       186 l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT  236 (389)
T KOG1975|consen  186 LMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT  236 (389)
T ss_pred             HHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence                    233699999999998 3 4667899999999999999977754

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.28  E-value=1e-06  Score=73.37  Aligned_cols=103  Identities=16%  Similarity=0.169  Sum_probs=74.6

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------CC-CCceEEeCCCCCC--CCC-Cceeeehhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------SI-PGVTHIGGDMFNS--IPA-ANAIFMKWVL  229 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------~~-~ri~~~~~d~~~~--~p~-~D~i~~~~vl  229 (309)
                      ..+|||+|||.|+++..|++.--.-+ .+++|- +..++.|+      .. +.|+|+..|++++  .+. .|+|+=...+
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~  146 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTL  146 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCce
Confidence            34999999999999999999875556 788887 44554443      22 4499999999986  333 3777744433


Q ss_pred             -----h-cCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          230 -----A-TWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       230 -----h-~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                           | +-++....--+-.+.+.|+|||+++|..-.+..+
T Consensus       147 DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~d  187 (227)
T KOG1271|consen  147 DAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKD  187 (227)
T ss_pred             eeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHH
Confidence                 2 2233333456777888999999999998877766

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.25  E-value=6.3e-06  Score=74.26  Aligned_cols=105  Identities=17%  Similarity=0.193  Sum_probs=74.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCCCceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPAANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~~D~i~~~  226 (309)
                      ...+.+|||+|||+|..+..+++...+ .. ++++|. +..++.++++      .+|+++.+|....   .+..|.|++-
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D  147 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGA-IVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLD  147 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEc
Confidence            445679999999999999999988754 46 999998 6666655432      5688998887542   2235988852


Q ss_pred             h------hh-------hcCChhH-------HHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          227 W------VL-------ATWTDDE-------CKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       227 ~------vl-------h~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      -      ++       ..|.+++       ..++|+++.+.|+|||+|+.....+..
T Consensus       148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            1      11       1233332       256999999999999998876554443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.25  E-value=5.6e-06  Score=79.69  Aligned_cols=110  Identities=13%  Similarity=0.063  Sum_probs=77.4

Q ss_pred             hhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCC-C
Q 021707          153 DSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPA-A  220 (309)
Q Consensus       153 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~-~  220 (309)
                      ..++ ...+.+|||+|||+|..+..+++.. +..+ ++++|. +..++.++++      .+++++.+|..+.   .++ .
T Consensus       231 ~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~-V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~f  308 (431)
T PRK14903        231 LLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGK-ILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTF  308 (431)
T ss_pred             HHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccC
Confidence            3443 5567799999999999999999886 4567 999998 6677666542      4688999998653   122 4


Q ss_pred             ceeeeh------hhh-------hcCChh-------HHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          221 NAIFMK------WVL-------ATWTDD-------ECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       221 D~i~~~------~vl-------h~~~d~-------~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      |.|++-      .++       +.++.+       .-.++|.++++.|+|||+++.....+...
T Consensus       309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~e  372 (431)
T PRK14903        309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKE  372 (431)
T ss_pred             CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh
Confidence            988852      112       222322       23678999999999999987766555443

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.25  E-value=1e-05  Score=71.13  Aligned_cols=117  Identities=15%  Similarity=0.191  Sum_probs=92.1

Q ss_pred             HHhhcCCccc----HHHHHhhcCCCCCcceEEEecCCccHHHHHHHH-hcCCCceEEEeec-hhHHhhCCCC-------C
Q 021707          138 RAISGVSVPF----MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQ-KHHFICEGINFDL-PEVVGEAPSI-------P  204 (309)
Q Consensus       138 ~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~-~~p~~~~~~~~D~-p~~~~~a~~~-------~  204 (309)
                      ..|...++..    +..++.... ...+.+|+|.|-|+|.++..|+. ..|.-+ ++.+|. +...+.|+++       +
T Consensus        69 ~~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~-v~tyE~r~d~~k~A~~Nl~~~~l~d  146 (256)
T COG2519          69 LSMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGH-VTTYEIREDFAKTARENLSEFGLGD  146 (256)
T ss_pred             HhCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCce-EEEEEecHHHHHHHHHHHHHhcccc
Confidence            3466666643    344667775 88899999999999999999997 568788 999997 6667666653       6


Q ss_pred             CceEEeCCCCCC-CCC-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          205 GVTHIGGDMFNS-IPA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       205 ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +|++..+|..+. .++ .|.+++     |.|++  -+.|.+++++|+|||.+++.-+..+.
T Consensus       147 ~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~veQ  200 (256)
T COG2519         147 RVTLKLGDVREGIDEEDVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTVEQ  200 (256)
T ss_pred             ceEEEeccccccccccccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence            799999999887 333 488876     56777  48999999999999999998777654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.22  E-value=2e-06  Score=78.33  Aligned_cols=94  Identities=17%  Similarity=0.093  Sum_probs=64.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCC--CCceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIP--AANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p--~~D~i~~~~vl  229 (309)
                      ++.+|||||||+|-++++.++... -+ ++++|. |..++.++++       +++.+.  . ..+.+  .+|+|+.+-..
T Consensus       161 ~g~~vLDvG~GSGILaiaA~klGA-~~-v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvANI~~  235 (295)
T PF06325_consen  161 PGKRVLDVGCGSGILAIAAAKLGA-KK-VVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVANILA  235 (295)
T ss_dssp             TTSEEEEES-TTSHHHHHHHHTTB-SE-EEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEES-H
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC-Ce-EEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEECCCH
Confidence            457999999999999999998743 35 999998 6666666553       555542  1 12222  25999865433


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                           +-...++..+.+.|+|||++++.-.+..+
T Consensus       236 -----~vL~~l~~~~~~~l~~~G~lIlSGIl~~~  264 (295)
T PF06325_consen  236 -----DVLLELAPDIASLLKPGGYLILSGILEEQ  264 (295)
T ss_dssp             -----HHHHHHHHHCHHHEEEEEEEEEEEEEGGG
T ss_pred             -----HHHHHHHHHHHHhhCCCCEEEEccccHHH
Confidence                 23467888899999999998887555443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PLN02672 methionine S-methyltransferase

Probab=98.22  E-value=5.3e-06  Score=86.95  Aligned_cols=98  Identities=17%  Similarity=0.085  Sum_probs=71.7

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----------------------CCceEEeCCCCCCC
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----------------------PGVTHIGGDMFNSI  217 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----------------------~ri~~~~~d~~~~~  217 (309)
                      ..+|+|+|||+|..++.+++++|+.+ ++++|+ +.+++.++++                      +|++++.+|+++..
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~-v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSK-VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            35899999999999999999999989 999998 6666555321                      47999999998875


Q ss_pred             CC----Cceeeeh--hhhhc----CC--------------------------hh----HHHHHHHHHHHhcCCCcEEEEe
Q 021707          218 PA----ANAIFMK--WVLAT----WT--------------------------DD----ECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       218 p~----~D~i~~~--~vlh~----~~--------------------------d~----~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      +.    .|+|+.+  ++...    .+                          ++    -..++++++.+.|+|||.++ +
T Consensus       198 ~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~-l  276 (1082)
T PLN02672        198 RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMI-F  276 (1082)
T ss_pred             cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEE-E
Confidence            32    4887754  22110    00                          01    13688899999999999665 5


Q ss_pred             ccc
Q 021707          258 EPV  260 (309)
Q Consensus       258 e~~  260 (309)
                      |.-
T Consensus       277 EiG  279 (1082)
T PLN02672        277 NMG  279 (1082)
T ss_pred             EEC
Confidence            543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.21  E-value=3.4e-06  Score=73.99  Aligned_cols=95  Identities=17%  Similarity=0.307  Sum_probs=69.3

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhC-C---C--CCCceEEeCCCCCC----CCC-C-ceeeehh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEA-P---S--IPGVTHIGGDMFNS----IPA-A-NAIFMKW  227 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a-~---~--~~ri~~~~~d~~~~----~p~-~-D~i~~~~  227 (309)
                      ...+||||||.|.+...+++++|+.. ++++|. ..++..+ +   +  ..++.++++|..+.    .|. . |-|++++
T Consensus        49 ~pi~lEIGfG~G~~l~~~A~~nP~~n-fiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F  127 (227)
T COG0220          49 APIVLEIGFGMGEFLVEMAKKNPEKN-FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF  127 (227)
T ss_pred             CcEEEEECCCCCHHHHHHHHHCCCCC-EEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence            36899999999999999999999999 999998 3333332 2   2  24999999998653    343 3 5555543


Q ss_pred             hhhcCChh-------HHHHHHHHHHHhcCCCcEEEEe
Q 021707          228 VLATWTDD-------ECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       228 vlh~~~d~-------~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      . --|+..       -....|+.+.+.|+|||.|.+.
T Consensus       128 P-DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~a  163 (227)
T COG0220         128 P-DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFA  163 (227)
T ss_pred             C-CCCCCccccccccCCHHHHHHHHHHccCCCEEEEE
Confidence            2 123321       1357899999999999998765

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.16  E-value=1.1e-06  Score=75.62  Aligned_cols=110  Identities=15%  Similarity=0.095  Sum_probs=79.3

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCc---eEEe-CCCCCC--CCCCce
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGV---THIG-GDMFNS--IPAANA  222 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri---~~~~-~d~~~~--~p~~D~  222 (309)
                      .++...+ .....+++|+|||||.++.++...-..   .+++|+ ..|++.+.+++-.   ..-. .+|.+.  ....|+
T Consensus       116 emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~---ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DL  191 (287)
T COG4976         116 EMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADR---LTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDL  191 (287)
T ss_pred             HHHHhcc-CCccceeeecccCcCcccHhHHHHHhh---ccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccc
Confidence            3444443 444789999999999999998866433   789999 5689988775221   1111 124432  333699


Q ss_pred             eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      |....||-++.+-+  .++.-+...|+|||.+...-.-.++++
T Consensus       192 i~AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~  232 (287)
T COG4976         192 IVAADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDG  232 (287)
T ss_pred             hhhhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCC
Confidence            99999999998775  889999999999998887655555554

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.16  E-value=1.3e-05  Score=65.94  Aligned_cols=111  Identities=19%  Similarity=0.234  Sum_probs=89.3

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCC-CCCCceEEeCCCCCC------CC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAP-SIPGVTHIGGDMFNS------IP  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~-~~~ri~~~~~d~~~~------~p  218 (309)
                      ++.+.+..+ +..+.-|+++|.|+|.+..+++++. ++-. .+.++- ++.+.... ..+.++++.||.+..      .+
T Consensus        37 A~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~-L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~  114 (194)
T COG3963          37 ARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPES-LTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHK  114 (194)
T ss_pred             HHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccc-eEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcC
Confidence            455666776 8888899999999999999999985 4455 777776 55555554 458888999998864      22


Q ss_pred             C--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          219 A--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       219 ~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      .  .|.|++.--+-.+|-....++|+++...|++||.++-..--
T Consensus       115 gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         115 GQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             CCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            2  49999999999999999999999999999999988876543

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.13  E-value=9.2e-06  Score=71.73  Aligned_cols=96  Identities=20%  Similarity=0.193  Sum_probs=70.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCC-CceeeehhhhhcCChhHH
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPA-ANAIFMKWVLATWTDDEC  237 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~-~D~i~~~~vlh~~~d~~~  237 (309)
                      +..++||||+|.|..+..++..|.+   +.+-+. +.|....++ .+++++..|-++.-+. .|+|.|.|+|-.-.++  
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~---v~aTE~S~~Mr~rL~~-kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--  167 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKE---VYATEASPPMRWRLSK-KGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--  167 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcce---EEeecCCHHHHHHHHh-CCCeEEehhhhhccCCceEEEeehhhhhccCCH--
Confidence            3578999999999999999988876   556666 455555544 4566665544443332 5999999999766666  


Q ss_pred             HHHHHHHHHhcCCCcEEEEeccccC
Q 021707          238 KLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       238 ~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ..+|+.++++|+|+|++++. .++|
T Consensus       168 ~~LL~~i~~~l~p~G~lilA-vVlP  191 (265)
T PF05219_consen  168 LTLLRDIRRALKPNGRLILA-VVLP  191 (265)
T ss_pred             HHHHHHHHHHhCCCCEEEEE-EEec
Confidence            58999999999999987764 4444

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.10  E-value=8.4e-06  Score=68.71  Aligned_cols=102  Identities=16%  Similarity=0.058  Sum_probs=67.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC---------CCCceEEeCCCCCCC------CC-Cc
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS---------IPGVTHIGGDMFNSI------PA-AN  221 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~---------~~ri~~~~~d~~~~~------p~-~D  221 (309)
                      ..++.+||++|||+|..++.+++.++..+ +++-|.++++...+.         ..++++.+.|+.++.      +. .|
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~-Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAAR-VVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SE-EEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCce-EEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            34568999999999999999999876667 999998766554432         267899998887641      22 59


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      +|+.+.++++  ++....+++.+.+.|+|+|.+++......
T Consensus       122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R~  160 (173)
T PF10294_consen  122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRRR  160 (173)
T ss_dssp             EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S-
T ss_pred             EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEec
Confidence            9999999985  56678899999999999988888776663

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.09  E-value=1.3e-05  Score=72.64  Aligned_cols=102  Identities=16%  Similarity=0.212  Sum_probs=75.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCC---ceEEeCCCC---CCCCCCceeeehhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPG---VTHIGGDMF---NSIPAANAIFMKWV  228 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~r---i~~~~~d~~---~~~p~~D~i~~~~v  228 (309)
                      .+.+|||+|+|.|..+.++.+.++....++++|. +.+.+.++.    ...   ..+. .++.   .+++..|+|+++|+
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~DLvi~s~~  111 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFLPFPPDDLVIASYV  111 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccccCCCCcEEEEehh
Confidence            4579999999999999999999996655899998 555554432    111   1111 1121   12334599999999


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      |-.+++++..++++++.+.+.+  .|+|+|+-.+..
T Consensus       112 L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G  145 (274)
T PF09243_consen  112 LNELPSAARAELVRSLWNKTAP--VLVLVEPGTPAG  145 (274)
T ss_pred             hhcCCchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence            9999998889999999888775  999999877765

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.08  E-value=1.4e-05  Score=71.51  Aligned_cols=91  Identities=10%  Similarity=0.176  Sum_probs=63.8

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCCCc
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPAAN  221 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~~D  221 (309)
                      ...+++.++ ..+..+|+|||||+|.++..++++++  + ++++|. +.+++.+++    .++++++.+|+.+. .+..|
T Consensus        18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d   93 (253)
T TIGR00755        18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAK--K-VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP   93 (253)
T ss_pred             HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCC--c-EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence            455666665 66778999999999999999999986  4 888888 556655543    37899999999875 44334


Q ss_pred             --eeeehhhhhcCChhHHHHHHHHHHH
Q 021707          222 --AIFMKWVLATWTDDECKLIMENCYK  246 (309)
Q Consensus       222 --~i~~~~vlh~~~d~~~~~iL~~~~~  246 (309)
                        .+++++.-++++.    .++.++.+
T Consensus        94 ~~~~vvsNlPy~i~~----~il~~ll~  116 (253)
T TIGR00755        94 KQLKVVSNLPYNISS----PLIFKLLE  116 (253)
T ss_pred             CcceEEEcCChhhHH----HHHHHHhc
Confidence              3455555555544    45555544

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.08  E-value=1.4e-05  Score=71.65  Aligned_cols=81  Identities=12%  Similarity=0.182  Sum_probs=60.1

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCCCc
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPAAN  221 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~~D  221 (309)
                      ...+++.++ ..+..+|+|||||+|.++..++++.  .+ ++++|. +.+++.+++    .++++++.+|+.+. ++..|
T Consensus        18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~-v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d   93 (258)
T PRK14896         18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KK-VYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN   93 (258)
T ss_pred             HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence            455666664 6667899999999999999999984  46 999998 566665543    36899999999874 55568


Q ss_pred             eeeehhhhhcCC
Q 021707          222 AIFMKWVLATWT  233 (309)
Q Consensus       222 ~i~~~~vlh~~~  233 (309)
                      .|+.+- -++.+
T Consensus        94 ~Vv~Nl-Py~i~  104 (258)
T PRK14896         94 KVVSNL-PYQIS  104 (258)
T ss_pred             EEEEcC-CcccC
Confidence            776643 34444

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.06  E-value=2.2e-05  Score=69.53  Aligned_cols=100  Identities=13%  Similarity=0.094  Sum_probs=68.8

Q ss_pred             CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhCCC-------CCCceEEe----CCCCCCCC--CC--
Q 021707          157 GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEAPS-------IPGVTHIG----GDMFNSIP--AA--  220 (309)
Q Consensus       157 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a~~-------~~ri~~~~----~d~~~~~p--~~--  220 (309)
                      ++.+...++|+|||+|..+..++...|+.+ ++.+|.+ ..+..+.+       .+++.++.    .|.+.+.|  ..  
T Consensus       145 ~~~~~~~ildlgtGSGaIslsll~~L~~~~-v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~  223 (328)
T KOG2904|consen  145 EHSKHTHILDLGTGSGAISLSLLHGLPQCT-VTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKI  223 (328)
T ss_pred             hhcccceEEEecCCccHHHHHHHhcCCCce-EEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCce
Confidence            355667999999999999999999999999 9999984 44554444       27888774    45444432  22  


Q ss_pred             ceeeeh--hhhhcC-----------Ch-----------hHHHHHHHHHHHhcCCCcEEEEe
Q 021707          221 NAIFMK--WVLATW-----------TD-----------DECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       221 D~i~~~--~vlh~~-----------~d-----------~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      |+++.+  ++.|+=           .+           +-...++.=+.+.|+|||.+.+-
T Consensus       224 dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le  284 (328)
T KOG2904|consen  224 DLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE  284 (328)
T ss_pred             eEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence            777664  343320           00           22456667778999999876654

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.06  E-value=7.6e-06  Score=70.51  Aligned_cols=93  Identities=9%  Similarity=0.007  Sum_probs=62.9

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC---C-Cceeeehhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP---A-ANAIFMKWV  228 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p---~-~D~i~~~~v  228 (309)
                      ...+|||+|||+|.++.+++.+.. .+ ++++|. +.+++.++++      .+++++.+|+++.++   . .|+|++.=-
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~-V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP  130 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYA-AG-ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP  130 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence            346899999999999998766653 46 999998 6666655442      579999999876432   2 599987655


Q ss_pred             hhcCChhHHHHHHHHHHHh--cCCCcEEEEe
Q 021707          229 LATWTDDECKLIMENCYKA--LLAGGKLIAC  257 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~a--L~pgG~l~i~  257 (309)
                      .+.   .-..++++.+.+.  |+|++.+++-
T Consensus       131 y~~---g~~~~~l~~l~~~~~l~~~~iv~ve  158 (199)
T PRK10909        131 FRK---GLLEETINLLEDNGWLADEALIYVE  158 (199)
T ss_pred             CCC---ChHHHHHHHHHHCCCcCCCcEEEEE
Confidence            322   1223455555553  7887755544

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.06  E-value=1.1e-05  Score=72.93  Aligned_cols=82  Identities=11%  Similarity=0.157  Sum_probs=58.9

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCCC-CCCC-c
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFNS-IPAA-N  221 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~~-~p~~-D  221 (309)
                      ...+++.++ .....+|||||||+|.++..++++.+  + ++++|. +.+++.+++.   ++++++.+|+.+. ++.. .
T Consensus        31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~  106 (272)
T PRK00274         31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--K-VTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQP  106 (272)
T ss_pred             HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--c-EEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCc
Confidence            345666664 66678999999999999999999976  6 999998 6777776543   6899999999874 3332 2


Q ss_pred             eeeehhhhhcCC
Q 021707          222 AIFMKWVLATWT  233 (309)
Q Consensus       222 ~i~~~~vlh~~~  233 (309)
                      ..+..+.-++.+
T Consensus       107 ~~vv~NlPY~is  118 (272)
T PRK00274        107 LKVVANLPYNIT  118 (272)
T ss_pred             ceEEEeCCccch
Confidence            233344444444

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.05  E-value=3.4e-05  Score=67.80  Aligned_cols=122  Identities=15%  Similarity=0.098  Sum_probs=81.2

Q ss_pred             hhhcCchHHHHHHHHhhcCCc----ccHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhC
Q 021707          125 YYGKMPEMNGLMRRAISGVSV----PFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEA  200 (309)
Q Consensus       125 ~~~~~~~~~~~f~~~m~~~~~----~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a  200 (309)
                      .+.++|...+.|+......-.    .-.+.+++.+...++...|.|+|||.+.++..     -..+ +..+|+-.+    
T Consensus       141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~-----~~~k-V~SfDL~a~----  210 (325)
T KOG3045|consen  141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASS-----ERHK-VHSFDLVAV----  210 (325)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhc-----cccc-eeeeeeecC----
Confidence            345677766666665544332    33556677665345678999999999998861     1224 788888543    


Q ss_pred             CCCCCceEEeCCCCC-CCCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          201 PSIPGVTHIGGDMFN-SIPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       201 ~~~~ri~~~~~d~~~-~~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                          +=++++.|+.. |++.  .|++++.-.|-   ..+....+++++++|+|||.+.|.|.-..-
T Consensus       211 ----~~~V~~cDm~~vPl~d~svDvaV~CLSLM---gtn~~df~kEa~RiLk~gG~l~IAEv~SRf  269 (325)
T KOG3045|consen  211 ----NERVIACDMRNVPLEDESVDVAVFCLSLM---GTNLADFIKEANRILKPGGLLYIAEVKSRF  269 (325)
T ss_pred             ----CCceeeccccCCcCccCcccEEEeeHhhh---cccHHHHHHHHHHHhccCceEEEEehhhhc
Confidence                33455678876 2433  38877665552   233468999999999999999999865443

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.02  E-value=1.2e-05  Score=71.66  Aligned_cols=104  Identities=20%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             CcceEEEecCCcc--HHHHHHHH-hcCCCceEEEeec-hhHHhhCCC----CCC--ceEEeCCCCCC---C--CC---C-
Q 021707          160 GVKRLVDVGGSAG--DCLRMILQ-KHHFICEGINFDL-PEVVGEAPS----IPG--VTHIGGDMFNS---I--PA---A-  220 (309)
Q Consensus       160 ~~~~vlDvG~G~G--~~~~~l~~-~~p~~~~~~~~D~-p~~~~~a~~----~~r--i~~~~~d~~~~---~--p~---~-  220 (309)
                      +...+||||||.=  ....++++ ..|+.+ ++-+|. |-+++.++.    .++  ..++.+|+.++   +  |.   . 
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aR-VVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~l  146 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDAR-VVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLL  146 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-E-EEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC-
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCce-EEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcC
Confidence            5789999999943  24455544 479999 999999 667776653    355  89999999876   2  22   1 


Q ss_pred             c-----eeeehhhhhcCCh-hHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          221 N-----AIFMKWVLATWTD-DECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       221 D-----~i~~~~vlh~~~d-~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      |     .+++.-+||+.+| ++...+++..+++|.||+.|+|.....+..
T Consensus       147 D~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~  196 (267)
T PF04672_consen  147 DFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGA  196 (267)
T ss_dssp             -TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS
T ss_pred             CCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCC
Confidence            4     5889999999987 678999999999999999999998876544

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.99  E-value=1.1e-05  Score=77.93  Aligned_cols=100  Identities=11%  Similarity=0.082  Sum_probs=68.3

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC---
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI---  217 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~---  217 (309)
                      .+.+++.++ .....+|||+|||+|.++..+++..  .+ ++++|. +.+++.++++      ++++++.+|+.+..   
T Consensus       286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~-V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~  361 (443)
T PRK13168        286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AE-VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ  361 (443)
T ss_pred             HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh
Confidence            344455553 4456799999999999999999886  46 999998 6788777642      57999999986532   


Q ss_pred             --C-C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          218 --P-A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       218 --p-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                        + . .|+|++.-     |-....++++.+.+ ++|++.+++.
T Consensus       362 ~~~~~~fD~Vi~dP-----Pr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        362 PWALGGFDKVLLDP-----PRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             hhhcCCCCEEEECc-----CCcChHHHHHHHHh-cCCCeEEEEE
Confidence              1 2 49887642     21122345555544 6888766665

>PLN02476 O-methyltransferase

Probab=97.97  E-value=2.1e-05  Score=70.94  Aligned_cols=100  Identities=14%  Similarity=0.099  Sum_probs=76.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCC---------C
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIP---------A  219 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p---------~  219 (309)
                      ..+..+|||||+++|..++.+++..| +-+ ++.+|. ++..+.|++       .++|+++.||..+.++         .
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~  194 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGC-LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS  194 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence            45678999999999999999999876 556 899998 556666654       2799999999876421         2


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      .|+|++-.     +..+-...+..+.+.|+|||.|++-+.++..
T Consensus       195 FD~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G  233 (278)
T PLN02476        195 YDFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLWHG  233 (278)
T ss_pred             CCEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCccCC
Confidence            48887643     4456788899999999999987776666554

>PLN02823 spermine synthase

Probab=97.96  E-value=2.3e-05  Score=72.85  Aligned_cols=97  Identities=19%  Similarity=0.135  Sum_probs=71.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCCC---CC-Ccee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNSI---PA-ANAI  223 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~~---p~-~D~i  223 (309)
                      +++.+||.||||.|..+.++++..+..+ ++++|+ |.+++.+++          .+|++++.+|.++.+   ++ .|+|
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI  180 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI  180 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence            3567999999999999999998766667 999999 778877764          278999999987642   22 4999


Q ss_pred             eehhhhhcCC---hh--HHHHHHH-HHHHhcCCCcEEEEe
Q 021707          224 FMKWVLATWT---DD--ECKLIME-NCYKALLAGGKLIAC  257 (309)
Q Consensus       224 ~~~~vlh~~~---d~--~~~~iL~-~~~~aL~pgG~l~i~  257 (309)
                      ++--. ..+.   ..  -..+.++ .+++.|+|||.+++.
T Consensus       181 i~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        181 IGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             EecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            97521 1110   00  0246787 899999999987764

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.95  E-value=1.7e-05  Score=76.40  Aligned_cols=126  Identities=21%  Similarity=0.220  Sum_probs=77.7

Q ss_pred             hhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCC---CCcceEEEecCCccHHHHHHHHhc----CCCceEEEeec-
Q 021707          122 AYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGF---KGVKRLVDVGGSAGDCLRMILQKH----HFICEGINFDL-  193 (309)
Q Consensus       122 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~---~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~~D~-  193 (309)
                      .|+.+++++..-+.|.+++.       ..+.+.....   .+...|+|||||+|-++...+++.    -..+ +.+++- 
T Consensus       152 tYe~fE~D~vKY~~Ye~AI~-------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~-VyAVEkn  223 (448)
T PF05185_consen  152 TYEVFEKDPVKYDQYERAIE-------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK-VYAVEKN  223 (448)
T ss_dssp             HHHHHCC-HHHHHHHHHHHH-------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE-EEEEESS
T ss_pred             cHhhHhcCHHHHHHHHHHHH-------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE-EEEEcCC
Confidence            67778888888788888764       2233332201   135789999999999987776654    2456 899987 


Q ss_pred             hhHHhhC----CC---CCCceEEeCCCCCC-CCC-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEE
Q 021707          194 PEVVGEA----PS---IPGVTHIGGDMFNS-IPA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       194 p~~~~~a----~~---~~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      |..+...    +.   .++|+++.+|+.+- .|+ +|+|+.=..=.....+-..+.|..+.+-|+|||.++
T Consensus       224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            3322211    11   28999999999875 554 699984222111122345567888888999998654

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=97.94  E-value=5.3e-06  Score=71.80  Aligned_cols=99  Identities=18%  Similarity=0.207  Sum_probs=75.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCC---------CC
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIP---------AA  220 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p---------~~  220 (309)
                      .++.+||+||+++|..+..+++..| +.+ ++.+|. |+..+.|++       .+||+++.||..+.++         ..
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~-i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGK-ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF  122 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSE-EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccce-EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence            3568999999999999999999987 477 999998 556666554       2799999999875321         24


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |+|++-.     ...+....+..+.+.|+|||.|++-+.++..
T Consensus       123 D~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G  160 (205)
T PF01596_consen  123 DFVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLWRG  160 (205)
T ss_dssp             EEEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTGGG
T ss_pred             eEEEEcc-----cccchhhHHHHHhhhccCCeEEEEccccccc
Confidence            9998754     4456678888999999999977777766543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK04148 hypothetical protein; Provisional

Probab=97.93  E-value=7.3e-05  Score=59.94  Aligned_cols=98  Identities=17%  Similarity=0.166  Sum_probs=68.7

Q ss_pred             HHhhcCCCCCcceEEEecCCccH-HHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCC----CCceee
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGD-CLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIP----AANAIF  224 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p----~~D~i~  224 (309)
                      +.+.+. -.+..+++|||||.|. ++..|.+.  +.. ++++|. |..++.+++. .++++..|+|++-+    .+|+|+
T Consensus         8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~-ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liy   82 (134)
T PRK04148          8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFD-VIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIY   82 (134)
T ss_pred             HHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEE
Confidence            344443 3345789999999996 77777765  456 999998 6666666543 67999999999833    359998


Q ss_pred             ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      ..+     |+.|...-+.++++...  .-++|....
T Consensus        83 sir-----pp~el~~~~~~la~~~~--~~~~i~~l~  111 (134)
T PRK04148         83 SIR-----PPRDLQPFILELAKKIN--VPLIIKPLS  111 (134)
T ss_pred             EeC-----CCHHHHHHHHHHHHHcC--CCEEEEcCC
Confidence            877     55666667777777665  446666433

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.92  E-value=1.6e-05  Score=68.31  Aligned_cols=111  Identities=15%  Similarity=0.212  Sum_probs=75.5

Q ss_pred             HHHHHhhcCCCCC--cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCCCC--C--
Q 021707          148 MTSVLDSYNGFKG--VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNSIP--A--  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~~p--~--  219 (309)
                      ....++.++ ++.  ..-|||||||+|..+..+...  +.. .+++|. |+|++.+.+. -.-.++-+|+-+.+|  +  
T Consensus        37 ~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~-wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGt  112 (270)
T KOG1541|consen   37 AERALELLA-LPGPKSGLILDIGCGSGLSGSVLSDS--GHQ-WIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGT  112 (270)
T ss_pred             HHHHHHHhh-CCCCCCcEEEEeccCCCcchheeccC--Cce-EEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCc
Confidence            344555554 444  788999999999999888765  455 899998 8899988752 113466678877533  3  


Q ss_pred             Cceeeeh----hhhh-----cCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 ANAIFMK----WVLA-----TWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 ~D~i~~~----~vlh-----~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .|.+|..    |.+|     +.|......++..++..|++|++.++.  +.|++
T Consensus       113 FDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q--fYpen  164 (270)
T KOG1541|consen  113 FDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ--FYPEN  164 (270)
T ss_pred             cceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE--ecccc
Confidence            3766532    3333     234445566788899999999988764  45554

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.90  E-value=3.3e-05  Score=69.91  Aligned_cols=98  Identities=22%  Similarity=0.254  Sum_probs=76.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----------CCceEEeCCCCCC---CCC-Cce
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----------PGVTHIGGDMFNS---IPA-ANA  222 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----------~ri~~~~~d~~~~---~p~-~D~  222 (309)
                      .++..+||-||+|.|..+.+++++.+.-+ ++++|+ |.|++.+++.          +|++++.+|..+.   .+. .|+
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~-i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv  152 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLPVER-ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV  152 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCcce-EEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence            34457999999999999999999988777 999999 8888887752          8999999998764   343 599


Q ss_pred             eeehhhhhcCChh---HHHHHHHHHHHhcCCCcEEEEe
Q 021707          223 IFMKWVLATWTDD---ECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       223 i~~~~vlh~~~d~---~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      |++--.=.. ...   -....++.|+++|+|+|.++..
T Consensus       153 Ii~D~tdp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         153 IIVDSTDPV-GPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EEEcCCCCC-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            986443211 110   1258999999999999988887

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=2.7e-05  Score=66.40  Aligned_cols=99  Identities=16%  Similarity=0.158  Sum_probs=72.1

Q ss_pred             HHHhhcC-CCCCcceEEEecCCccHHHHHHHHhc--CCCceEEEeec-hhHHhhCCCC----------------CCceEE
Q 021707          150 SVLDSYN-GFKGVKRLVDVGGSAGDCLRMILQKH--HFICEGINFDL-PEVVGEAPSI----------------PGVTHI  209 (309)
Q Consensus       150 ~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-p~~~~~a~~~----------------~ri~~~  209 (309)
                      .+++.++ .+..+.++||||+|+|.++..++.--  +... .+++|. |++++..+++                .++.++
T Consensus        71 ~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~-~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv  149 (237)
T KOG1661|consen   71 TALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGN-VHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV  149 (237)
T ss_pred             HHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCcc-ccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence            3444442 25677899999999999999888542  3333 488997 8888776542                578999


Q ss_pred             eCCCCCCCCC---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          210 GGDMFNSIPA---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       210 ~~d~~~~~p~---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .||-.+-.++   .|.|++.-        .+.++.++....|+|||+++|-
T Consensus       150 vGDgr~g~~e~a~YDaIhvGA--------aa~~~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  150 VGDGRKGYAEQAPYDAIHVGA--------AASELPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             eCCccccCCccCCcceEEEcc--------CccccHHHHHHhhccCCeEEEe
Confidence            9998876544   39998872        2346778888899999999873

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.89  E-value=3.5e-05  Score=68.42  Aligned_cols=120  Identities=14%  Similarity=0.225  Sum_probs=81.9

Q ss_pred             HHHHHhhcCCccc----HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCCC-----
Q 021707          135 LMRRAISGVSVPF----MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPSI-----  203 (309)
Q Consensus       135 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~~-----  203 (309)
                      .|...|...++-.    +..++..++ ...+.+|++.|.|+|.++..|++. .|.-+ +..+|. ++..+.|+++     
T Consensus        12 ~~~~~l~rrtQIiYpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~-v~t~E~~~~~~~~A~~n~~~~g   89 (247)
T PF08704_consen   12 LWTLSLPRRTQIIYPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGH-VYTYEFREDRAEKARKNFERHG   89 (247)
T ss_dssp             HHHHTS-SSS----HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHhccCCcceeeCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeE-EEccccCHHHHHHHHHHHHHcC
Confidence            4555566666643    234667776 888899999999999999999975 58888 999998 5556655542     


Q ss_pred             --CCceEEeCCCCCC-CC----C-CceeeehhhhhcCChhHHHHHHHHHHHhc-CCCcEEEEeccccCC
Q 021707          204 --PGVTHIGGDMFNS-IP----A-ANAIFMKWVLATWTDDECKLIMENCYKAL-LAGGKLIACEPVLLD  263 (309)
Q Consensus       204 --~ri~~~~~d~~~~-~p----~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL-~pgG~l~i~e~~~~~  263 (309)
                        ++|++..+|..+. ++    . +|.|++     |+|++-  ..+..+.++| +|||++.+.-+....
T Consensus        90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ieQ  151 (247)
T PF08704_consen   90 LDDNVTVHHRDVCEEGFDEELESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIEQ  151 (247)
T ss_dssp             CCTTEEEEES-GGCG--STT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHHH
T ss_pred             CCCCceeEecceecccccccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHHH
Confidence              6899999998653 32    2 488776     667663  6789999999 899999998766553

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.88  E-value=4.1e-05  Score=69.94  Aligned_cols=89  Identities=16%  Similarity=0.260  Sum_probs=63.3

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IP  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p  218 (309)
                      ...+++..+ .....+|+|||||+|.++..+++..  .+ ++++|+ +.+++.+++       .++++++.+|+.+. .+
T Consensus        25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~-V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~  100 (294)
T PTZ00338         25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KK-VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP  100 (294)
T ss_pred             HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--Cc-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence            445666664 6667899999999999999999875  35 899998 556665543       36899999999875 44


Q ss_pred             CCceeeehhhhhcCChhHHHHHH
Q 021707          219 AANAIFMKWVLATWTDDECKLIM  241 (309)
Q Consensus       219 ~~D~i~~~~vlh~~~d~~~~~iL  241 (309)
                      ..|.|+ .+.-++++.+...++|
T Consensus       101 ~~d~Vv-aNlPY~Istpil~~ll  122 (294)
T PTZ00338        101 YFDVCV-ANVPYQISSPLVFKLL  122 (294)
T ss_pred             ccCEEE-ecCCcccCcHHHHHHH
Confidence            457665 4555555555444444

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.87  E-value=0.00011  Score=67.78  Aligned_cols=105  Identities=11%  Similarity=0.197  Sum_probs=75.2

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC----CCceEEEeech-hHHhh----CC--CCCCceE--EeCCCCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH----FICEGINFDLP-EVVGE----AP--SIPGVTH--IGGDMFN  215 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~~D~p-~~~~~----a~--~~~ri~~--~~~d~~~  215 (309)
                      ..+.+.++   ....++|+|||+|.-...|++...    ..+ .+.+|++ +.++.    .+  ..+.+++  +++|+.+
T Consensus        68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~-Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~  143 (319)
T TIGR03439        68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVD-YYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD  143 (319)
T ss_pred             HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence            34454443   445899999999998777776653    355 8999984 33433    33  2366666  7788865


Q ss_pred             C---CC-----C-Cc-eeeehhhhhcCChhHHHHHHHHHHH-hcCCCcEEEEe
Q 021707          216 S---IP-----A-AN-AIFMKWVLATWTDDECKLIMENCYK-ALLAGGKLIAC  257 (309)
Q Consensus       216 ~---~p-----~-~D-~i~~~~vlh~~~d~~~~~iL~~~~~-aL~pgG~l~i~  257 (309)
                      .   +|     . .. ++++...+.+++++++..+|+++++ .|+||+.++|.
T Consensus       144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG  196 (319)
T TIGR03439       144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG  196 (319)
T ss_pred             HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence            4   22     1 24 4556789999999999999999999 99999888774

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.81  E-value=4.7e-05  Score=72.40  Aligned_cols=98  Identities=17%  Similarity=0.094  Sum_probs=68.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCCC------C-CCce
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNSI------P-AANA  222 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~~------p-~~D~  222 (309)
                      .++.+|||+|||+|.++...+.. ...+ ++.+|. +.+++.++++        ++++++.+|+++..      . ..|+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~-V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl  296 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG-GCSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence            34679999999999998876643 3346 999998 6677666542        37899999998742      1 2499


Q ss_pred             eeehhhhhcCCh-------hHHHHHHHHHHHhcCCCcEEEEec
Q 021707          223 IFMKWVLATWTD-------DECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       223 i~~~~vlh~~~d-------~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      |++.----.-+.       ..-.++++.+.+.|+|||.++.+.
T Consensus       297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            997522100011       124466777889999999999865

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=1.4e-05  Score=72.97  Aligned_cols=103  Identities=17%  Similarity=0.221  Sum_probs=73.4

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHH----hhCCCC---CCceEEeCCCCCC---CCCCceeeehhhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVV----GEAPSI---PGVTHIGGDMFNS---IPAANAIFMKWVLA  230 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~----~~a~~~---~ri~~~~~d~~~~---~p~~D~i~~~~vlh  230 (309)
                      ..+|||||.|.|.-+.++-.-+|+++.+++++.+..+    .....+   .+..+...|+..+   +|.+|.|.+..++|
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~  193 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD  193 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence            4679999999999999999999999867778764333    222221   3333444455443   66678887777776


Q ss_pred             cCCh----hHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          231 TWTD----DECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       231 ~~~d----~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      .+-+    ......++.+...+.|||.|+|+|.-.|.
T Consensus       194 eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~  230 (484)
T COG5459         194 ELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA  230 (484)
T ss_pred             hhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence            6533    33444889999999999999999976665

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.79  E-value=4.4e-05  Score=77.94  Aligned_cols=96  Identities=13%  Similarity=0.087  Sum_probs=70.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCCC---CC-Cceeeeh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNSI---PA-ANAIFMK  226 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~~---p~-~D~i~~~  226 (309)
                      ++.+|||+|||+|.++..+++.. ..+ ++.+|. +.+++.++++        ++++++.+|.++.+   +. .|+|++.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~G-a~~-V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGG-AKS-TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCC-CCE-EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            45799999999999999999863 346 999998 6677766642        47999999987642   33 5999974


Q ss_pred             hh--hh-----c-CC-hhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          227 WV--LA-----T-WT-DDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       227 ~v--lh-----~-~~-d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      --  ..     . +. ...-..+++.+.+.|+|||.+++.
T Consensus       616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~  655 (702)
T PRK11783        616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS  655 (702)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            11  00     0 10 123467899999999999988765

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.78  E-value=5.5e-05  Score=74.30  Aligned_cols=96  Identities=15%  Similarity=0.187  Sum_probs=69.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec--hhHHhhCCC-----CCCceEEeCCCC---CCCCC-C-ceeeehh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL--PEVVGEAPS-----IPGVTHIGGDMF---NSIPA-A-NAIFMKW  227 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~--p~~~~~a~~-----~~ri~~~~~d~~---~~~p~-~-D~i~~~~  227 (309)
                      ....+||||||.|.++..+++.+|+.. ++++|.  +.+...+++     ..++.++++|+.   ..+|. . |.|++.+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~-~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F  425 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDAL-FIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF  425 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence            357899999999999999999999999 999998  333322221     268888888763   22554 2 7666654


Q ss_pred             hhhcCChh-------HHHHHHHHHHHhcCCCcEEEEe
Q 021707          228 VLATWTDD-------ECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       228 vlh~~~d~-------~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .= -|+..       -....|+.+++.|+|||.|.+.
T Consensus       426 PD-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~  461 (506)
T PRK01544        426 PD-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA  461 (506)
T ss_pred             CC-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence            31 23321       2467899999999999998865

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.75  E-value=0.00023  Score=62.62  Aligned_cols=96  Identities=18%  Similarity=0.163  Sum_probs=62.0

Q ss_pred             HHHHhhcCCC-CCcceEEEecCCccHHHHHHHHhcCCCceEEEeechh-HH-hhCCCCCCceEEe-CCCCCC--------
Q 021707          149 TSVLDSYNGF-KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPE-VV-GEAPSIPGVTHIG-GDMFNS--------  216 (309)
Q Consensus       149 ~~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~-~~-~~a~~~~ri~~~~-~d~~~~--------  216 (309)
                      ..+++.+. . .+..++||+|||+|.++..+++. +-.+ ++++|... ++ ...++.+++.... .|+...        
T Consensus        64 ~~~l~~~~-~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~-v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d  140 (228)
T TIGR00478        64 KEALEEFN-IDVKNKIVLDVGSSTGGFTDCALQK-GAKE-VYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD  140 (228)
T ss_pred             HHHHHhcC-CCCCCCEEEEcccCCCHHHHHHHHc-CCCE-EEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence            44555554 3 34578999999999999999987 3345 99999933 44 4466666654332 344321        


Q ss_pred             CCCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEE-Eec
Q 021707          217 IPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLI-ACE  258 (309)
Q Consensus       217 ~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~-i~e  258 (309)
                      ++..|+.+++..+          +|..+.+.|+| |.++ ++.
T Consensus       141 ~~~~DvsfiS~~~----------~l~~i~~~l~~-~~~~~L~K  172 (228)
T TIGR00478       141 FATFDVSFISLIS----------ILPELDLLLNP-NDLTLLFK  172 (228)
T ss_pred             ceeeeEEEeehHh----------HHHHHHHHhCc-CeEEEEcC
Confidence            1224777766543          57788899999 5554 443

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.74  E-value=8.9e-05  Score=64.48  Aligned_cols=99  Identities=15%  Similarity=0.176  Sum_probs=77.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEe-CCCCCCC-----CCCce
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIG-GDMFNSI-----PAANA  222 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~-~d~~~~~-----p~~D~  222 (309)
                      ..+..+||+||.+.|..++.++...| +.+ .+.+|. |+..+.|+++       ++|+++. ||..+.+     +..|+
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~-l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl  135 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGR-LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL  135 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCe-EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence            45788999999999999999999999 777 999998 7777777753       7788888 5776532     22499


Q ss_pred             eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ||+=.     ...+-.+.|..+.+.|+|||.+++-..+++
T Consensus       136 iFIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~  170 (219)
T COG4122         136 VFIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG  170 (219)
T ss_pred             EEEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence            98743     445667889999999999996665555555

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=6e-05  Score=63.47  Aligned_cols=67  Identities=16%  Similarity=0.119  Sum_probs=52.4

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCCCceeeehhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPAANAIFMKWVL  229 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~~D~i~~~~vl  229 (309)
                      ..+|+|+|||+|.+++..+-..|.  +++++|. |+.++.++++     .+|.|++.|..+.-...|.++++--+
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF  118 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF  118 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence            468999999999999988876543  4899998 7788777764     68999999996654445777776544

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.73  E-value=0.00011  Score=66.86  Aligned_cols=90  Identities=21%  Similarity=0.221  Sum_probs=65.4

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCC-CCC-Cceee---ehhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNS-IPA-ANAIF---MKWV  228 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~-~p~-~D~i~---~~~v  228 (309)
                      ...|||||||+|.++.-.++.. ..+ +..++.++|.+.|++       .+||++++|.+.+- +|+ +|+++   |.+.
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAG-A~~-vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~m  255 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAG-AKK-VYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYM  255 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhC-cce-EEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhh
Confidence            4789999999999887666553 334 899999888888765       28999999999764 887 59988   4444


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEE
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      |.   ++...+---.+++-|+|+|+.+
T Consensus       256 L~---NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  256 LV---NERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             hh---hHHHHHHHHHHHhhcCCCCccc
Confidence            42   2322233334678999999765

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.72  E-value=6.5e-05  Score=69.42  Aligned_cols=64  Identities=9%  Similarity=-0.002  Sum_probs=50.1

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC---CC-Cceeeeh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI---PA-ANAIFMK  226 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~---p~-~D~i~~~  226 (309)
                      ...+|||+|||+|.++..+++.  ..+ ++++|. +.+++.++++      ++++++.+|+.+..   .. .|+|++.
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~-V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQ-LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            3579999999999999999985  456 999998 6777776542      57999999986532   12 4998876

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.72  E-value=0.00014  Score=64.97  Aligned_cols=104  Identities=18%  Similarity=0.174  Sum_probs=76.8

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--Cceeee
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIFM  225 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~~  225 (309)
                      .+...++..+....++|+|||.|.+..    .+|.+. .++.|+ ...+..+++.+.......|+.+. .++  .|..+.
T Consensus        35 ~v~qfl~~~~~gsv~~d~gCGngky~~----~~p~~~-~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~ls  109 (293)
T KOG1331|consen   35 MVRQFLDSQPTGSVGLDVGCGNGKYLG----VNPLCL-IIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALS  109 (293)
T ss_pred             HHHHHHhccCCcceeeecccCCcccCc----CCCcce-eeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchh
Confidence            333333323346789999999998763    458888 999999 45666666554445666788764 433  499999


Q ss_pred             hhhhhcCC-hhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          226 KWVLATWT-DDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       226 ~~vlh~~~-d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      .-++|+|. .....++++++.+.++|||..+|.-
T Consensus       110 iavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyv  143 (293)
T KOG1331|consen  110 IAVIHHLSTRERRERALEELLRVLRPGGNALVYV  143 (293)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEE
Confidence            99999986 4567899999999999999977654

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.72  E-value=2.9e-05  Score=74.32  Aligned_cols=97  Identities=18%  Similarity=0.339  Sum_probs=66.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec------hhHHhhCCCC--CCceEEeCCCCCCCCC-C-ceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL------PEVVGEAPSI--PGVTHIGGDMFNSIPA-A-NAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~------p~~~~~a~~~--~ri~~~~~d~~~~~p~-~-D~i~~~~vl  229 (309)
                      ...++||||||+|.|+..++++.     ++.+-+      +..+.-|.+.  +-+--+-+.-.=++|. + |++.+++++
T Consensus       117 ~iR~~LDvGcG~aSF~a~l~~r~-----V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~  191 (506)
T PF03141_consen  117 GIRTALDVGCGVASFGAYLLERN-----VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCL  191 (506)
T ss_pred             ceEEEEeccceeehhHHHHhhCC-----ceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhccccc
Confidence            35789999999999999999884     333332      1222222222  1111111222224665 4 999999999


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ..|...+ -.+|-++-++|+|||++++.-+-..
T Consensus       192 i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  192 IPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             ccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence            9998776 4689999999999999998887665

; GO: 0008168 methyltransferase activity

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.69  E-value=2.9e-05  Score=69.19  Aligned_cols=99  Identities=22%  Similarity=0.232  Sum_probs=72.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC--Cce
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA--ANA  222 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~--~D~  222 (309)
                      +++.+||=||+|.|..+.++++..+..+ ++++|+ |.|++.+++          .+|++++.+|.+..   .++  .|+
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~-i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv  153 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVES-ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV  153 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SE-EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcce-EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence            3578999999999999999997766667 999999 777777654          27999999998653   334  499


Q ss_pred             eeehhhhhcCChh--HHHHHHHHHHHhcCCCcEEEEec
Q 021707          223 IFMKWVLATWTDD--ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       223 i~~~~vlh~~~d~--~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      |+.--.--.-+..  -..+.++.+++.|+|||.+++.-
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  154 IIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            8862221111111  13579999999999999988876

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK00536 speE spermidine synthase; Provisional

Probab=97.69  E-value=0.00015  Score=64.99  Aligned_cols=90  Identities=13%  Similarity=0.055  Sum_probs=67.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCCCCC-Cceeee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNSIPA-ANAIFM  225 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~~p~-~D~i~~  225 (309)
                      .+++.+||=||||.|..+.+++++ |. + ++.+|+ +.|++.+++          .+|++++.. +.+..++ .|+|++
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~-v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIv  145 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-DT-H-VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIIC  145 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-CC-e-eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEE
Confidence            456789999999999999999987 54 7 999999 667777765          288998862 2221223 599986


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      =..    .+   ....+.++++|+|||.++..-
T Consensus       146 Ds~----~~---~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        146 LQE----PD---IHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             cCC----CC---hHHHHHHHHhcCCCcEEEECC
Confidence            532    22   367789999999999877753

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.59  E-value=0.00013  Score=64.96  Aligned_cols=99  Identities=12%  Similarity=0.043  Sum_probs=73.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCC----------
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIP----------  218 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p----------  218 (309)
                      ..+..+||+||.++|.-++.+++..| +.+ ++.+|. ++..+.|++       .++|+++.||..+.++          
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~-v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~  155 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG  155 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence            34568999999999999999998875 667 999998 555555543       3899999999876421          


Q ss_pred             CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          219 AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       219 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ..|+||+=.     ....-...+..+.+.|+|||.|++-+.++.
T Consensus       156 ~fD~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~~  194 (247)
T PLN02589        156 TFDFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLWN  194 (247)
T ss_pred             cccEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCCC
Confidence            248888743     344566788888899999997665555444

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=97.57  E-value=6.4e-05  Score=72.47  Aligned_cols=97  Identities=13%  Similarity=0.249  Sum_probs=66.2

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC----
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP----  218 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p----  218 (309)
                      .+.+.+. ..+..+|+|+|||+|.++..+++..  .+ ++++|. +.+++.++++      .+++++.+|+.+.++    
T Consensus       283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~-V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~  358 (431)
T TIGR00479       283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KS-VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW  358 (431)
T ss_pred             HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CE-EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh
Confidence            3444443 5556799999999999999999875  35 999998 7788777653      689999999864211    


Q ss_pred             --C-CceeeehhhhhcCChhH-HHHHHHHHHHhcCCCcEEEE
Q 021707          219 --A-ANAIFMKWVLATWTDDE-CKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       219 --~-~D~i~~~~vlh~~~d~~-~~~iL~~~~~aL~pgG~l~i  256 (309)
                        . .|+|++.-     |... ...+++.+.+ ++|++.+++
T Consensus       359 ~~~~~D~vi~dP-----Pr~G~~~~~l~~l~~-l~~~~ivyv  394 (431)
T TIGR00479       359 AGQIPDVLLLDP-----PRKGCAAEVLRTIIE-LKPERIVYV  394 (431)
T ss_pred             cCCCCCEEEECc-----CCCCCCHHHHHHHHh-cCCCEEEEE
Confidence              2 38887632     2111 2355655543 788876655

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.52  E-value=0.00011  Score=62.81  Aligned_cols=95  Identities=14%  Similarity=0.072  Sum_probs=60.6

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---C--CC--Cceeee
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---I--PA--ANAIFM  225 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~--p~--~D~i~~  225 (309)
                      +.+|||++||+|.++.+++.+... + ++.+|. +..++.++++       ++++++.+|.++.   .  ..  .|+|++
T Consensus        50 g~~vLDLfaGsG~lglea~srga~-~-v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAK-V-AFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCC-E-EEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            468999999999999999999753 6 899998 5555554432       5789999998653   1  12  366665


Q ss_pred             hhhhhcCChhHHHHHHHHHHH--hcCCCcEEEEecccc
Q 021707          226 KWVLATWTDDECKLIMENCYK--ALLAGGKLIACEPVL  261 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~--aL~pgG~l~i~e~~~  261 (309)
                      -=-...   ....++++.+.+  .|+++| ++++|...
T Consensus       128 DPPy~~---~~~~~~l~~l~~~~~l~~~~-iiv~E~~~  161 (189)
T TIGR00095       128 DPPFFN---GALQALLELCENNWILEDTV-LIVVEEDR  161 (189)
T ss_pred             CcCCCC---CcHHHHHHHHHHCCCCCCCe-EEEEEecC
Confidence            322221   112344544433  466666 55665443

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.46  E-value=0.00025  Score=65.40  Aligned_cols=104  Identities=14%  Similarity=0.144  Sum_probs=68.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEe----CCCCCCC--CC--Cce
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIG----GDMFNSI--PA--ANA  222 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~----~d~~~~~--p~--~D~  222 (309)
                      ...++||||||+|.....++.+.++.+ ++++|+ +..++.|+++        ++|+++.    .++++..  +.  .|+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~-~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWR-FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence            457999999999999999998889999 999998 6666666532        4777754    2444432  22  499


Q ss_pred             eeehhhhhcCChhH---HHHHHHHHH----------------HhcCCCcEEEEeccccCCC
Q 021707          223 IFMKWVLATWTDDE---CKLIMENCY----------------KALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       223 i~~~~vlh~~~d~~---~~~iL~~~~----------------~aL~pgG~l~i~e~~~~~~  264 (309)
                      |+++=-+|.-.++.   ..+-.++..                +.+.+||.+-++..+..+.
T Consensus       193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS  253 (321)
T PRK11727        193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES  253 (321)
T ss_pred             EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH
Confidence            99998777544331   222233332                2344677766666655554

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.45  E-value=0.00023  Score=64.87  Aligned_cols=66  Identities=24%  Similarity=0.222  Sum_probs=54.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC----CCceEEeCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI----PGVTHIGGDMFN  215 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~----~ri~~~~~d~~~  215 (309)
                      ...+++.+. ......++|++||.|.++..+++.+| +.+ ++++|. |.+++.+++.    +|++++.+|+.+
T Consensus         8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~-VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~   79 (296)
T PRK00050          8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGR-LIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN   79 (296)
T ss_pred             HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence            456777774 55667999999999999999999996 678 999999 7788777643    589999999875

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.43  E-value=0.00014  Score=61.76  Aligned_cols=99  Identities=14%  Similarity=0.162  Sum_probs=66.3

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhC-------CC------CCCceEEeCCCCCCCCC----C--
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEA-------PS------IPGVTHIGGDMFNSIPA----A--  220 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a-------~~------~~ri~~~~~d~~~~~p~----~--  220 (309)
                      ...++|||||.|.++..|...||+.- ++++++ -.|.+..       +.      ..++.+...+.+...|+    +  
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtL-iLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL  139 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTL-ILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL  139 (249)
T ss_pred             cceEEeeccCccchhhhccccCccce-eeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence            35699999999999999999999999 999997 2333222       21      26678887777666665    1  


Q ss_pred             -ceeeehhhhhcCChh-----HHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          221 -NAIFMKWVLATWTDD-----ECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       221 -D~i~~~~vlh~~~d~-----~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                       -..++.---|.+...     -...++.+..=.|++||.++.+.-+
T Consensus       140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence             122222222333222     1356778888889999999876543

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=97.42  E-value=0.0002  Score=67.83  Aligned_cols=89  Identities=10%  Similarity=-0.034  Sum_probs=60.6

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC----CCCceeeehhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI----PAANAIFMKWVL  229 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~----p~~D~i~~~~vl  229 (309)
                      ..+|+|+|||+|.++..++..  ..+ ++++|. +..++.++++      ++++++.+|+.+..    ...|+|++.=- 
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~--~~~-v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP-  309 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP--DTQ-LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPP-  309 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc--CCe-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCC-
Confidence            468999999999999999965  356 999998 6677766542      57999999986532    22598887522 


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .. .  -..++++.+. .++|++.+++.
T Consensus       310 r~-G--~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       310 RR-G--IGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             CC-C--CcHHHHHHHH-hcCCCeEEEEE
Confidence            11 1  1124444443 37888766655

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.42  E-value=0.00024  Score=65.21  Aligned_cols=94  Identities=17%  Similarity=0.145  Sum_probs=65.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCC-CC-C-Cceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNS-IP-A-ANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~-~p-~-~D~i~~~~vl  229 (309)
                      +...|||||||+|-++.-.+++. ..+ +.++|.+.+...+.+       .+.|+++.|...+- +| + .|+|+.-|.=
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~-V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMG  137 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARK-VYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMG  137 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cce-EEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhh
Confidence            45799999999999999888886 445 999999887776654       26689999887654 66 3 4999853322


Q ss_pred             hcC-ChhHHHHHHHHHHHhcCCCcEEE
Q 021707          230 ATW-TDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       230 h~~-~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      +.+ -+.-...+|-.==+-|+|||.++
T Consensus       138 y~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  138 YFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             HHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            221 12222334444456789999765

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.23  E-value=0.0007  Score=62.42  Aligned_cols=95  Identities=21%  Similarity=0.306  Sum_probs=71.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------------CCCceEEeCCCCCCCCC----C
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------------IPGVTHIGGDMFNSIPA----A  220 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------------~~ri~~~~~d~~~~~p~----~  220 (309)
                      ++..+++-+|||.|..+.+++ +||+..+++.+|+ |.|++.++.             .+|++++.-|.++-...    .
T Consensus       288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            356799999999999999987 6797655999999 889988873             18999999998875322    2


Q ss_pred             ceeeehhhhhcCChhH--------HHHHHHHHHHhcCCCcEEEEecc
Q 021707          221 NAIFMKWVLATWTDDE--------CKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~--------~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      |.++.     |++|+.        ..+.-+-++++|+++|.+++...
T Consensus       367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence            66553     444432        34667778899999998887653

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.16  E-value=0.00026  Score=60.15  Aligned_cols=90  Identities=17%  Similarity=0.155  Sum_probs=68.0

Q ss_pred             eEEEecCCccHHHHHHHHhcCCCceEEEeec-h---hHHhhCCC---CCCceEEeCCCCCC-CCC-CceeeehhhhhcCC
Q 021707          163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-P---EVVGEAPS---IPGVTHIGGDMFNS-IPA-ANAIFMKWVLATWT  233 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p---~~~~~a~~---~~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~~  233 (309)
                      +++|||+|.|.=++-++=.+|+.+ ++.+|. .   ..++.+..   .++++++++...+. .+. .|+|+++-+-    
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~-~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----  125 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQ-VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----  125 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSE-EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----
T ss_pred             eEEecCCCCCChhHHHHHhCCCCc-EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----
Confidence            899999999999999999999999 999997 1   23333322   37899999888662 333 4999988763    


Q ss_pred             hhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          234 DDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       234 d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                        ....++.-+...+++||+++..-.
T Consensus       126 --~l~~l~~~~~~~l~~~G~~l~~KG  149 (184)
T PF02527_consen  126 --PLDKLLELARPLLKPGGRLLAYKG  149 (184)
T ss_dssp             --SHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             --CHHHHHHHHHHhcCCCCEEEEEcC
Confidence              234788888889999999998854

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.13  E-value=0.0011  Score=55.88  Aligned_cols=97  Identities=12%  Similarity=0.107  Sum_probs=72.9

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCCCceeeehhhhhcCC
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPAANAIFMKWVLATWT  233 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~~D~i~~~~vlh~~~  233 (309)
                      ..+.|+|.|+|-++.-.+++  .-+ ++.++. |...+.+.++      .+++++.||..+. +..+|+|+|-..=--+-
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~r-ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi  110 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AER-VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALI  110 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hce-EEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhh
Confidence            47899999999988766655  224 899998 6666666664      7899999999885 76689998765433344


Q ss_pred             hhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          234 DDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       234 d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      +++.+.+++.+.+-|+-+++++=.+...
T Consensus       111 ~E~qVpV~n~vleFLr~d~tiiPq~v~~  138 (252)
T COG4076         111 EEKQVPVINAVLEFLRYDPTIIPQEVRI  138 (252)
T ss_pred             cccccHHHHHHHHHhhcCCccccHHHhh
Confidence            5566889999999999888887555433

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.12  E-value=0.0011  Score=58.79  Aligned_cols=74  Identities=15%  Similarity=0.339  Sum_probs=58.1

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IP  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p  218 (309)
                      .+.+++.-+ ......||+||.|+|.++..++++.  .+ ++.++. |.++++..+       ..+.+++.||+++- +|
T Consensus        47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~--kk-VvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P  122 (315)
T KOG0820|consen   47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG--KK-VVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP  122 (315)
T ss_pred             HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc--Ce-EEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence            445666665 6677899999999999999999984  45 888888 677776544       26899999999975 77


Q ss_pred             CCceeee
Q 021707          219 AANAIFM  225 (309)
Q Consensus       219 ~~D~i~~  225 (309)
                      -.|.++.
T Consensus       123 ~fd~cVs  129 (315)
T KOG0820|consen  123 RFDGCVS  129 (315)
T ss_pred             ccceeec
Confidence            7777765

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=97.06  E-value=0.00023  Score=47.19  Aligned_cols=45  Identities=27%  Similarity=0.283  Sum_probs=34.1

Q ss_pred             chhhhhhhhhhcCC--CCCCHHHHHHHhCcCCCCCcchHHHHHHHHH
Q 021707            4 NECRDGRKKVRLAN--TPLSVSQILTCILPSGGGDAENLQCILRLLT   48 (309)
Q Consensus         4 ~~~~~g~~~~~l~~--~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~   48 (309)
                      ..+++|+||.+...  +++|.+||+.+++.++..++..|.|+||+|+
T Consensus         5 ~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~   51 (51)
T PF08100_consen    5 CAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV   51 (51)
T ss_dssp             HHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence            46789999988654  5999999999993232344679999999985

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.06  E-value=0.0032  Score=56.16  Aligned_cols=84  Identities=11%  Similarity=0.187  Sum_probs=59.7

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC----CCCCceEEeCCCCCC-CCC--
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP----SIPGVTHIGGDMFNS-IPA--  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~----~~~ri~~~~~d~~~~-~p~--  219 (309)
                      .+.+++..+ ......|++||+|.|.++..|+++...   ++++++ +.+++..+    ..++++++.+|+.+. +|.  
T Consensus        19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~   94 (259)
T COG0030          19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAAR---VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA   94 (259)
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCe---EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence            566777775 656789999999999999999999765   666666 33343333    358999999999985 664  


Q ss_pred             CceeeehhhhhcCChh
Q 021707          220 ANAIFMKWVLATWTDD  235 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~  235 (309)
                      .-..+.+|.-++.+.+
T Consensus        95 ~~~~vVaNlPY~Issp  110 (259)
T COG0030          95 QPYKVVANLPYNISSP  110 (259)
T ss_pred             CCCEEEEcCCCcccHH
Confidence            2344455555666554

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.98  E-value=0.001  Score=57.57  Aligned_cols=81  Identities=17%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             EEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC---CceeeehhhhhcC
Q 021707          164 LVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA---ANAIFMKWVLATW  232 (309)
Q Consensus       164 vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~---~D~i~~~~vlh~~  232 (309)
                      |+||||.+|.+...|++...--+ ++..|. +.-++.|++       .++|++..+|-++.++.   .|+|++.-.    
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~-~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPK-AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE----
T ss_pred             CceeccchhHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----
Confidence            68999999999999999987777 999998 444444433       38999999998887543   467665432    


Q ss_pred             ChhHHHHHHHHHHHhcC
Q 021707          233 TDDECKLIMENCYKALL  249 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~  249 (309)
                      ......+||.+....++
T Consensus        76 GG~lI~~ILe~~~~~~~   92 (205)
T PF04816_consen   76 GGELIIEILEAGPEKLS   92 (205)
T ss_dssp             -HHHHHHHHHHTGGGGT
T ss_pred             CHHHHHHHHHhhHHHhc
Confidence            33344455555544443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.94  E-value=0.0066  Score=47.69  Aligned_cols=96  Identities=16%  Similarity=0.260  Sum_probs=63.9

Q ss_pred             EEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC---CC---ceEEeCCCCC---CCCC---Cceeeehhhh
Q 021707          164 LVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI---PG---VTHIGGDMFN---SIPA---ANAIFMKWVL  229 (309)
Q Consensus       164 vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~---~r---i~~~~~d~~~---~~p~---~D~i~~~~vl  229 (309)
                      ++|+|||+|... .+....+. .. ++++|. +.++...+..   ..   +.+..+|...   +++.   .|++ .....
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~  128 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAY-VVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV  128 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCce-EEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence            999999999976 33333333 35 778887 4444443221   11   5788888765   2333   3888 44444


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +++.+  ....++++.+.++|+|.+++.+......
T Consensus       129 ~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~  161 (257)
T COG0500         129 LHLLP--PAKALRELLRVLKPGGRLVLSDLLRDGL  161 (257)
T ss_pred             hhcCC--HHHHHHHHHHhcCCCcEEEEEeccCCCC
Confidence            44433  4689999999999999999988776554

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.85  E-value=0.003  Score=52.93  Aligned_cols=101  Identities=10%  Similarity=0.154  Sum_probs=69.1

Q ss_pred             cceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCCC-CC-Cceeeehh--hh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNSI-PA-ANAIFMKW--VL  229 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~~-p~-~D~i~~~~--vl  229 (309)
                      ..-+++||||+|..+.-|.+.. |+.. ....|+ |+.++...+     .-++..+..|++..+ ++ .|+++++-  +.
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~-~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVp  122 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQAL-YLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVP  122 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCc
Confidence            4679999999999998888765 6777 888998 666665433     245778888887653 23 37766652  22


Q ss_pred             h------------cCC-----hhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          230 A------------TWT-----DDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       230 h------------~~~-----d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      -            -|.     .+-..++|.++-..|.|.|.++++-.-..
T Consensus       123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N  172 (209)
T KOG3191|consen  123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN  172 (209)
T ss_pred             CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence            1            122     11245788888888999999998854433

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=96.85  E-value=0.0006  Score=58.74  Aligned_cols=90  Identities=18%  Similarity=0.201  Sum_probs=62.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC--Cceeeehh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA--ANAIFMKW  227 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~--~D~i~~~~  227 (309)
                      ...+.+|+|.-||.|.+++.+++..+..+ ++..|+ |..++..++       .++|..+.+|..+..+.  +|-|+|..
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~-V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l  177 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKR-VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL  177 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSE-EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccE-EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence            34578999999999999999999777777 999998 666655543       27899999999776543  48888765


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEE
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKL  254 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l  254 (309)
                      .     . .+.+.|..+.+.+++||.+
T Consensus       178 p-----~-~~~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  178 P-----E-SSLEFLDAALSLLKEGGII  198 (200)
T ss_dssp             T-----S-SGGGGHHHHHHHEEEEEEE
T ss_pred             h-----H-HHHHHHHHHHHHhcCCcEE
Confidence            3     2 2346788888888888765

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.83  E-value=0.0021  Score=57.77  Aligned_cols=95  Identities=15%  Similarity=0.256  Sum_probs=65.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC----CCCCceEEeCCCCCC-CCC--
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP----SIPGVTHIGGDMFNS-IPA--  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~----~~~ri~~~~~d~~~~-~p~--  219 (309)
                      .+.+++.++ ......|+|||+|.|.++..|++..  .+ ++++|. +..++..+    ..++++++.+|+++- .+.  
T Consensus        19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~-v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~   94 (262)
T PF00398_consen   19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KR-VIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL   94 (262)
T ss_dssp             HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SE-EEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--Cc-ceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence            456777775 6678899999999999999999998  45 889987 44444433    358999999999975 333  


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCC
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLA  250 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p  250 (309)
                        ....+..+.-++.+    ..++.++...-+.
T Consensus        95 ~~~~~~vv~NlPy~is----~~il~~ll~~~~~  123 (262)
T PF00398_consen   95 KNQPLLVVGNLPYNIS----SPILRKLLELYRF  123 (262)
T ss_dssp             SSSEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred             cCCceEEEEEecccch----HHHHHHHhhcccc
Confidence              34555555544333    3566666653333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=96.79  E-value=0.0067  Score=58.98  Aligned_cols=102  Identities=18%  Similarity=0.228  Sum_probs=69.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC---CCC-Cceee--
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS---IPA-ANAIF--  224 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~---~p~-~D~i~--  224 (309)
                      .+.+.+|||++++.|.=+..+++...+-..++..|. +.-+...++      ..++.+...|....   ++. .|.|+  
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence            456789999999999999999998765322899998 343433332      25677777776532   344 48887  


Q ss_pred             --eh---------hhhhcCChhH-------HHHHHHHHHHhcCCCcEEEEeccc
Q 021707          225 --MK---------WVLATWTDDE-------CKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       225 --~~---------~vlh~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                        |+         .+...|+.++       -.+||.++.+.|+|||+|+ .-++
T Consensus       191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LV-YSTC  243 (470)
T PRK11933        191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLV-YSTC  243 (470)
T ss_pred             CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEE-EECC
Confidence              33         1223455433       2789999999999999875 4444

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.79  E-value=0.0026  Score=51.64  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=52.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHh----cCCCceEEEeec-hhHHhhCCC---------CCCceEEeCCCCCC-CCC-Cce
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQK----HHFICEGINFDL-PEVVGEAPS---------IPGVTHIGGDMFNS-IPA-ANA  222 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-p~~~~~a~~---------~~ri~~~~~d~~~~-~p~-~D~  222 (309)
                      ....+|+|+|||.|.++..++..    .|+++ ++++|. +..++.+.+         ..++++..+++... ... .++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLR-VLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI  102 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe-EEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence            45789999999999999999982    27888 999997 444444332         15566666665433 222 377


Q ss_pred             eeehhhhhcCChh
Q 021707          223 IFMKWVLATWTDD  235 (309)
Q Consensus       223 i~~~~vlh~~~d~  235 (309)
                      ++--|..-++++.
T Consensus       103 ~vgLHaCG~Ls~~  115 (141)
T PF13679_consen  103 LVGLHACGDLSDR  115 (141)
T ss_pred             EEEeecccchHHH
Confidence            7777777666653

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.78  E-value=0.0024  Score=55.49  Aligned_cols=95  Identities=17%  Similarity=0.157  Sum_probs=69.0

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec----hhHHhhCCC---CCCceEEeCCCCCCC--CC-Cceeeehhhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL----PEVVGEAPS---IPGVTHIGGDMFNSI--PA-ANAIFMKWVLA  230 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~----p~~~~~a~~---~~ri~~~~~d~~~~~--p~-~D~i~~~~vlh  230 (309)
                      ..+++|||.|.|.=++-++=.+|+.+ ++.+|.    -..++.+.+   .++++++++-+.+..  +. .|+|..+-+- 
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-  145 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-  145 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCc-EEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc-
Confidence            58999999999999999999999999 999997    234444433   378999988775542  24 7888877652 


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                           ....++.-+..-+++||.++..-...-
T Consensus       146 -----~L~~l~e~~~pllk~~g~~~~~k~~~~  172 (215)
T COG0357         146 -----SLNVLLELCLPLLKVGGGFLAYKGLAG  172 (215)
T ss_pred             -----chHHHHHHHHHhcccCCcchhhhHHhh
Confidence                 234566667777788887765544433

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=96.76  E-value=0.00099  Score=56.26  Aligned_cols=107  Identities=18%  Similarity=0.210  Sum_probs=62.2

Q ss_pred             HHHHhhcCCCC--CcceEEEecCCccHHHHHHHHhc-CCCceEEEeechhHHhhCCCCCCceEEeCCCCCC---------
Q 021707          149 TSVLDSYNGFK--GVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS---------  216 (309)
Q Consensus       149 ~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~---------  216 (309)
                      ..+.+.++-+.  +..++||+||++|.++..++++. +..+ ++++|+...-    ....+.++.+|+.++         
T Consensus        10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~-v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~   84 (181)
T PF01728_consen   10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGR-VVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKL   84 (181)
T ss_dssp             HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEE-EEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred             HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccce-EEEEeccccc----cccceeeeecccchhhHHHhhhhh
Confidence            34555554133  45899999999999999999998 6667 9999995441    114445545554432         


Q ss_pred             CC----CCceeeehh---hhhc--CC----hhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          217 IP----AANAIFMKW---VLAT--WT----DDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       217 ~p----~~D~i~~~~---vlh~--~~----d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      .+    ..|+|++=-   +-.+  ..    -.-+...|.-+.+.|+|||.+++--.-
T Consensus        85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence            11    237777432   1111  11    122444455556678999987765443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=96.76  E-value=0.0023  Score=60.72  Aligned_cols=90  Identities=10%  Similarity=0.017  Sum_probs=67.9

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC---CCceeeehhhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP---AANAIFMKWVLA  230 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p---~~D~i~~~~vlh  230 (309)
                      ..+|+|++||+|.+++.++.+.+..+ +++.|. |..++.++++      +++++..+|..+...   ..|+|++-- . 
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~-V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-  134 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-  134 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence            35899999999999999998877556 999998 6677766543      456788888755322   359988842 1 


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                        ..  ....|..+.+.++|||.+.+.
T Consensus       135 --Gs--~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        135 --GS--PAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             --CC--cHHHHHHHHHHhcCCCEEEEE
Confidence              21  246788878889999999998

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.67  E-value=0.013  Score=50.35  Aligned_cols=108  Identities=19%  Similarity=0.268  Sum_probs=74.4

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeechhHHhhCCCCCCceEEeCCCCCC---------C
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS---------I  217 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~---------~  217 (309)
                      ..++.+.+.-+.++..|+|+|+..|.++..+++... ..+ ++++|+-++-.    .++|.++.+|++.+         +
T Consensus        33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l  107 (205)
T COG0293          33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEAL  107 (205)
T ss_pred             HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECccccc----CCCceEEeeeccCccHHHHHHHHc
Confidence            344566664456789999999999999998888764 456 89999855422    35699999999865         2


Q ss_pred             CC--Cceeee---hhhhhcCC------hhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          218 PA--ANAIFM---KWVLATWT------DDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       218 p~--~D~i~~---~~vlh~~~------d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +.  .|+|+.   .++--.|.      -.-+...+.-+.+.|+|||.+++-.+-
T Consensus       108 ~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq  161 (205)
T COG0293         108 GGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ  161 (205)
T ss_pred             CCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence            22  378772   22222222      223556677778899999988877543

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=96.63  E-value=0.0041  Score=43.89  Aligned_cols=59  Identities=12%  Similarity=0.099  Sum_probs=48.6

Q ss_pred             hhhhhhhhhhcCCCC--CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707            5 ECRDGRKKVRLANTP--LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus         5 ~~~~g~~~~~l~~~~--~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      .++..+.+++...++  +|+.|||+.+    |++...+.+.|..|...|+|...++  .++.|.++.
T Consensus         6 ~~~~~IL~~L~~~g~~~~ta~eLa~~l----gl~~~~v~r~L~~L~~~G~V~~~~~--~~~~W~i~~   66 (68)
T smart00550        6 SLEEKILEFLENSGDETSTALQLAKNL----GLPKKEVNRVLYSLEKKGKVCKQGG--TPPLWKLTD   66 (68)
T ss_pred             HHHHHHHHHHHHCCCCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecCC--CCCceEeec
Confidence            455667777766666  9999999999    9999999999999999999988652  146788764

Helix-turn-helix-containing domain. Also known as Zab.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=96.57  E-value=0.0042  Score=53.95  Aligned_cols=91  Identities=21%  Similarity=0.212  Sum_probs=65.9

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--CCc--eEEeCCCCC-CCCC--CceeeehhhhhcC
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--PGV--THIGGDMFN-SIPA--ANAIFMKWVLATW  232 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--~ri--~~~~~d~~~-~~p~--~D~i~~~~vlh~~  232 (309)
                      ...++|||||.|+....+..+.  +...+.+|. -.|++.++..  +.|  ....+|-.. ++.+  .|+++.+..+|-.
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~  150 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT  150 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence            5689999999999999998876  323788998 4677777653  333  333344322 2433  3999999999854


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEE
Q 021707          233 TDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      ++  ...-+.+|+.+|||+|.++
T Consensus       151 Nd--LPg~m~~ck~~lKPDg~Fi  171 (325)
T KOG2940|consen  151 ND--LPGSMIQCKLALKPDGLFI  171 (325)
T ss_pred             cc--CchHHHHHHHhcCCCccch
Confidence            44  3678999999999999655

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=96.51  E-value=0.0016  Score=45.89  Aligned_cols=47  Identities=17%  Similarity=0.184  Sum_probs=41.7

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +.-+...++.+++.|++|||+.+    |++...+.+.|+-|...|+|.+.+
T Consensus        10 E~~vy~~Ll~~~~~t~~eIa~~l----~i~~~~v~~~L~~L~~~GlV~~~~   56 (68)
T PF01978_consen   10 EAKVYLALLKNGPATAEEIAEEL----GISRSTVYRALKSLEEKGLVEREE   56 (68)
T ss_dssp             HHHHHHHHHHHCHEEHHHHHHHH----TSSHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEc
Confidence            34455566678999999999999    999999999999999999999886

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=96.51  E-value=0.0052  Score=45.54  Aligned_cols=56  Identities=13%  Similarity=0.181  Sum_probs=45.9

Q ss_pred             hhhhhhcCC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707            9 GRKKVRLAN-TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus         9 g~~~~~l~~-~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      .+++.+... ++.|..|||+.+    |++...+.|.|..|+..|++....   .++.|++++..
T Consensus         9 ~Il~~l~~~~~~~t~~~ia~~l----~i~~~tv~r~l~~L~~~g~l~~~~---~~~~y~l~~~~   65 (91)
T smart00346        9 AVLRALAEEPGGLTLAELAERL----GLSKSTAHRLLNTLQELGYVEQDG---QNGRYRLGPKV   65 (91)
T ss_pred             HHHHHHHhCCCCcCHHHHHHHh----CCCHHHHHHHHHHHHHCCCeeecC---CCCceeecHHH
Confidence            344544444 789999999999    999999999999999999999874   15689998744

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=96.49  E-value=0.0039  Score=54.33  Aligned_cols=94  Identities=21%  Similarity=0.227  Sum_probs=69.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCC---CCC--Ccee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNS---IPA--ANAI  223 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~---~p~--~D~i  223 (309)
                      -+.+.+|||...|-|.++++.+++.. .. ++-++- |.|++.++-+        .+|+++.||.++.   ++.  .|+|
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA-~~-VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI  209 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGA-IH-VITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI  209 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCC-cE-EEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence            34678999999999999999999853 13 555554 7888777643        4689999998865   444  3877


Q ss_pred             eehhhhhcCC------hhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          224 FMKWVLATWT------DDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       224 ~~~~vlh~~~------d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +     ||-|      .--..++-+++++.|+|||+++-.-
T Consensus       210 i-----HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv  245 (287)
T COG2521         210 I-----HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV  245 (287)
T ss_pred             e-----eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence            6     3322      2235678999999999999998663

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=96.49  E-value=0.014  Score=52.46  Aligned_cols=97  Identities=14%  Similarity=0.193  Sum_probs=70.3

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeech--------hHHhhCCC-----------------------------
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP--------EVVGEAPS-----------------------------  202 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p--------~~~~~a~~-----------------------------  202 (309)
                      ...+||-=|||-|+++.+++++  +.. +.+.|++        -++....+                             
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~--G~~-~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP  132 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKL--GYA-VQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP  132 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhc--cce-EEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence            3579999999999999999999  445 6777762        12222111                             


Q ss_pred             ----------CCCceEEeCCCCCCC--C---CC-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          203 ----------IPGVTHIGGDMFNSI--P---AA-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       203 ----------~~ri~~~~~d~~~~~--p---~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                                ..+++..+|||.+..  +   .. |+|+..+.+.  +.....+-|..|++.|||||.++=+-+++
T Consensus       133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLkpgG~WIN~GPLl  205 (270)
T PF07942_consen  133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLKPGGYWINFGPLL  205 (270)
T ss_pred             CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhccCCEEEecCCcc
Confidence                      036888999998752  2   23 9998887664  34457899999999999999777665554

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.47  E-value=0.0032  Score=50.76  Aligned_cols=51  Identities=22%  Similarity=0.229  Sum_probs=40.6

Q ss_pred             eEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCC
Q 021707          163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMF  214 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~  214 (309)
                      +++|||||.|.++..+++.+|..+ ++++|. |.+.+.++++      ++++++...+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~-v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGR-VIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence            589999999999999999999988 999998 6666555432      45777776554

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.46  E-value=0.003  Score=50.98  Aligned_cols=76  Identities=14%  Similarity=0.109  Sum_probs=53.7

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC---Cc
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA---AN  221 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~---~D  221 (309)
                      +-+.++ --.+.++.|+|||.|.+..  +-.+|..+.++++|+ |+.++....+     -++.+.+.|+.+..+.   .|
T Consensus        40 Ih~Tyg-diEgkkl~DLgcgcGmLs~--a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fD  116 (185)
T KOG3420|consen   40 IHNTYG-DIEGKKLKDLGCGCGMLSI--AFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFD  116 (185)
T ss_pred             HHhhhc-cccCcchhhhcCchhhhHH--HhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEe
Confidence            334443 2245789999999999994  455677666899999 8888887764     4578888888776443   27


Q ss_pred             eeeehhhh
Q 021707          222 AIFMKWVL  229 (309)
Q Consensus       222 ~i~~~~vl  229 (309)
                      ..+++--+
T Consensus       117 taviNppF  124 (185)
T KOG3420|consen  117 TAVINPPF  124 (185)
T ss_pred             eEEecCCC
Confidence            77765544

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.46  E-value=0.00083  Score=55.83  Aligned_cols=62  Identities=19%  Similarity=0.299  Sum_probs=44.9

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCC-----C-Cceeeeh
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIP-----A-ANAIFMK  226 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p-----~-~D~i~~~  226 (309)
                      ..|+|+-||.|..++.+++.+..   ++.+|. |..++.++.       .+||+++.+|+++..+     . .|+|+++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            36999999999999999999754   889998 555665553       2799999999987522     2 4888865

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=96.45  E-value=0.0088  Score=55.35  Aligned_cols=97  Identities=16%  Similarity=0.118  Sum_probs=69.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCC-C--CceeeehhhhhcCChh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIP-A--ANAIFMKWVLATWTDD  235 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p-~--~D~i~~~~vlh~~~d~  235 (309)
                      ..+.++|||||++|.++..++++  +.+ ++++|...+.......++|+.+.+|.+...| .  .|++++=.+.   .+.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~-V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~  283 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR--GMF-VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPA  283 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc--CCE-EEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHH
Confidence            45789999999999999999998  457 9999987777777778999999999988654 2  3888876653   233


Q ss_pred             HHHHHHHHHHHhcCCC-cEEEEeccccCCC
Q 021707          236 ECKLIMENCYKALLAG-GKLIACEPVLLDD  264 (309)
Q Consensus       236 ~~~~iL~~~~~aL~pg-G~l~i~e~~~~~~  264 (309)
                         ++++-+.+-|..| -+-.|...=+|-.
T Consensus       284 ---rva~lm~~Wl~~g~cr~aIfnLKlpmk  310 (357)
T PRK11760        284 ---RVAELMAQWLVNGWCREAIFNLKLPMK  310 (357)
T ss_pred             ---HHHHHHHHHHhcCcccEEEEEEEcCCC
Confidence               4444455555544 3344444444544

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.26  E-value=0.01  Score=51.34  Aligned_cols=89  Identities=21%  Similarity=0.250  Sum_probs=65.3

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCC-CCC-----CceeeehhhhhcCCh-
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS-IPA-----ANAIFMKWVLATWTD-  234 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~-~p~-----~D~i~~~~vlh~~~d-  234 (309)
                      -++|||||=+......   .++-+. ++-+|+.+.      .+  .+...||++. +|.     .|+|.++-||-+.|+ 
T Consensus        53 lrlLEVGals~~N~~s---~~~~fd-vt~IDLns~------~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p  120 (219)
T PF11968_consen   53 LRLLEVGALSTDNACS---TSGWFD-VTRIDLNSQ------HP--GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP  120 (219)
T ss_pred             ceEEeecccCCCCccc---ccCcee-eEEeecCCC------CC--CceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence            6999999875543332   355666 899998441      12  3344688874 652     499999999999985 


Q ss_pred             hHHHHHHHHHHHhcCCCcE-----EEEeccccC
Q 021707          235 DECKLIMENCYKALLAGGK-----LIACEPVLL  262 (309)
Q Consensus       235 ~~~~~iL~~~~~aL~pgG~-----l~i~e~~~~  262 (309)
                      .+.-++|+++++.|+|+|.     |+|+=+..-
T Consensus       121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C  153 (219)
T PF11968_consen  121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC  153 (219)
T ss_pred             HHHHHHHHHHHHHhCCCCccCcceEEEEeCchH
Confidence            4688999999999999999     888754433

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=96.16  E-value=0.0027  Score=56.70  Aligned_cols=99  Identities=19%  Similarity=0.236  Sum_probs=61.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------------------C------------C
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------------------I------------P  204 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------------------~------------~  204 (309)
                      ++.+++|||||.-.+  .++...+..+.++..|. +...+..++                      .            .
T Consensus        56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            467999999998555  33444444444778786 332221110                      0            1


Q ss_pred             Cc-eEEeCCCCCC--------CCC-CceeeehhhhhcCC--hhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          205 GV-THIGGDMFNS--------IPA-ANAIFMKWVLATWT--DDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       205 ri-~~~~~d~~~~--------~p~-~D~i~~~~vlh~~~--d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      .| .++..|.+++        .|+ +|++++..+|....  .++-.+.++++.+.|||||.|++....
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l  201 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL  201 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence            24 3666788764        233 69999999997643  457889999999999999999998654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=96.10  E-value=0.016  Score=52.91  Aligned_cols=98  Identities=16%  Similarity=0.203  Sum_probs=72.0

Q ss_pred             cceEEEecCCccHHHHHHHHhc--------------------CCCceEEEeec---hhHHhhCCC---------------
Q 021707          161 VKRLVDVGGSAGDCLRMILQKH--------------------HFICEGINFDL---PEVVGEAPS---------------  202 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~--------------------p~~~~~~~~D~---p~~~~~a~~---------------  202 (309)
                      ..+||-||||.|.=..+++..+                    |.++ ++.+|.   ..|+.....               
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~-itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~  165 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLS-ITLVDIADWSSVVDRLTTTITSPPPLSKYASAA  165 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcce-EEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence            3699999999988766666655                    2256 889997   455554221               


Q ss_pred             --------CCCceEEeCCCCCC-C---------CCCceeeehhhhhcC---ChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          203 --------IPGVTHIGGDMFNS-I---------PAANAIFMKWVLATW---TDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       203 --------~~ri~~~~~d~~~~-~---------p~~D~i~~~~vlh~~---~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                              .-+++|...|+++. .         |..++|.+.+.++.+   .-.+.+++|.++-+.++||..|+|+|-
T Consensus       166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS  243 (315)
T PF11312_consen  166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS  243 (315)
T ss_pred             ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence                    02478999999865 1         123888888888753   345678999999999999999999984

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.04  E-value=0.041  Score=46.80  Aligned_cols=102  Identities=16%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCCCceeeehhhhh
Q 021707          157 GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPAANAIFMKWVLA  230 (309)
Q Consensus       157 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~~D~i~~~~vlh  230 (309)
                      ++-.+.+|||.|.|+|..+++.++... .. ++.-|. |.....++-+     -.|.+...|..-.-|..|+++.+.+++
T Consensus        76 etVrgkrVLd~gagsgLvaIAaa~aGA-~~-v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy  153 (218)
T COG3897          76 ETVRGKRVLDLGAGSGLVAIAAARAGA-AE-VVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFY  153 (218)
T ss_pred             cccccceeeecccccChHHHHHHHhhh-HH-HHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceec
Confidence            356688999999999999998887642 22 555555 5554444322     457777778766333459999999987


Q ss_pred             cCChhHHHHHHHHHHHhcC-CCcEEEEeccccCC
Q 021707          231 TWTDDECKLIMENCYKALL-AGGKLIACEPVLLD  263 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~-pgG~l~i~e~~~~~  263 (309)
                      +-+..  .+++. ....++ .|-.+++.|+-.+.
T Consensus       154 ~~~~a--~~l~~-~~~~l~~~g~~vlvgdp~R~~  184 (218)
T COG3897         154 NHTEA--DRLIP-WKDRLAEAGAAVLVGDPGRAY  184 (218)
T ss_pred             CchHH--HHHHH-HHHHHHhCCCEEEEeCCCCCC
Confidence            66544  57777 555565 45566666655444

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=96.04  E-value=0.011  Score=43.28  Aligned_cols=48  Identities=25%  Similarity=0.332  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ++.|.+|||+.+    ++++..+++++..|...|+++...+  ..|.|.++...
T Consensus        24 ~~~s~~eiA~~~----~i~~~~l~kil~~L~~~Gli~s~~G--~~GGy~L~~~~   71 (83)
T PF02082_consen   24 KPVSSKEIAERL----GISPSYLRKILQKLKKAGLIESSRG--RGGGYRLARPP   71 (83)
T ss_dssp             C-BEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEETS--TTSEEEESS-C
T ss_pred             CCCCHHHHHHHH----CcCHHHHHHHHHHHhhCCeeEecCC--CCCceeecCCH
Confidence            469999999999    9999999999999999999987752  14788888633

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=96.03  E-value=0.0058  Score=57.41  Aligned_cols=51  Identities=14%  Similarity=0.057  Sum_probs=42.4

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCC
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFN  215 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~  215 (309)
                      .+|+|++||+|.++..+++.+.  + ++++|. +++++.++++      ++++++.+|..+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~-v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--R-VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4799999999999999998863  6 999998 6777777653      579999999865

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.02  E-value=0.035  Score=56.98  Aligned_cols=110  Identities=13%  Similarity=0.022  Sum_probs=71.0

Q ss_pred             HHHHHhhcCCC-CCcceEEEecCCccHHHHHHHHhc----C--------------------------------------C
Q 021707          148 MTSVLDSYNGF-KGVKRLVDVGGSAGDCLRMILQKH----H--------------------------------------F  184 (309)
Q Consensus       148 ~~~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~----p--------------------------------------~  184 (309)
                      +..++.... | .....++|-.||+|+++++.+...    |                                      .
T Consensus       178 Aaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~  256 (702)
T PRK11783        178 AAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP  256 (702)
T ss_pred             HHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence            344454443 7 456899999999999999887631    1                                      2


Q ss_pred             CceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CC---C-Cceeeehhhhh-cCC-hhHHHHHHHHHHHhcC
Q 021707          185 ICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IP---A-ANAIFMKWVLA-TWT-DDECKLIMENCYKALL  249 (309)
Q Consensus       185 ~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p---~-~D~i~~~~vlh-~~~-d~~~~~iL~~~~~aL~  249 (309)
                      .+ ++++|. +.+++.++++       ++|++..+|+.+. .+   + .|+|+++--.- .+. +.+..++-+++-+.++
T Consensus       257 ~~-i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk  335 (702)
T PRK11783        257 SK-FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK  335 (702)
T ss_pred             ce-EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence            35 899998 7777777653       5789999999764 22   1 48888763321 122 2334445444444443


Q ss_pred             ---CCcEEEEecc
Q 021707          250 ---AGGKLIACEP  259 (309)
Q Consensus       250 ---pgG~l~i~e~  259 (309)
                         ||+++++.-.
T Consensus       336 ~~~~g~~~~llt~  348 (702)
T PRK11783        336 QQFGGWNAALFSS  348 (702)
T ss_pred             HhCCCCeEEEEeC
Confidence               8888877643

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=95.97  E-value=0.0077  Score=39.99  Aligned_cols=43  Identities=19%  Similarity=0.274  Sum_probs=35.3

Q ss_pred             hhhhhcC-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707           10 RKKVRLA-NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus        10 ~~~~~l~-~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      +++.+.. .++.|+.|||+.+    |++.-.+.|+|..|+..|+++++
T Consensus         8 iL~~l~~~~~~~t~~eia~~~----gl~~stv~r~L~tL~~~g~v~~d   51 (52)
T PF09339_consen    8 ILEALAESGGPLTLSEIARAL----GLPKSTVHRLLQTLVEEGYVERD   51 (52)
T ss_dssp             HHHCHHCTBSCEEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEC
T ss_pred             HHHHHHcCCCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCcCeecC
Confidence            3344433 3568999999999    99999999999999999999986

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=95.90  E-value=0.018  Score=39.92  Aligned_cols=46  Identities=24%  Similarity=0.374  Sum_probs=40.9

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      ...+.|..|||+.+    |++...+.+.|..|...|++....    .+.|.++|
T Consensus        22 ~~~~~s~~ela~~~----g~s~~tv~r~l~~L~~~g~i~~~~----~~~~~l~~   67 (67)
T cd00092          22 VQLPLTRQEIADYL----GLTRETVSRTLKELEEEGLISRRG----RGKYRVNP   67 (67)
T ss_pred             ccCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecC----CCeEEeCC
Confidence            35689999999999    999999999999999999999874    47888764

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=95.87  E-value=0.019  Score=36.88  Aligned_cols=41  Identities=22%  Similarity=0.333  Sum_probs=36.7

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707           19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT   68 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t   68 (309)
                      +.|..+||+.+    |++...+.+.|+.|...|+++..     .+.|.++
T Consensus         8 ~~s~~~la~~l----~~s~~tv~~~l~~L~~~g~l~~~-----~~~~~i~   48 (48)
T smart00419        8 PLTRQEIAELL----GLTRETVSRTLKRLEKEGLISRE-----GGRIVIL   48 (48)
T ss_pred             ccCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEe-----CCEEEEC
Confidence            68999999999    99999999999999999999877     3677654

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=95.85  E-value=0.051  Score=47.29  Aligned_cols=96  Identities=18%  Similarity=0.247  Sum_probs=69.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-h----hHHhhCCCCCCceEEeCCCCCC-----C-CCCceeee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-P----EVVGEAPSIPGVTHIGGDMFNS-----I-PAANAIFM  225 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p----~~~~~a~~~~ri~~~~~d~~~~-----~-p~~D~i~~  225 (309)
                      +..+.+||-+|..+|+...-+..--. +-. +.++++ |    ..+..++++++|--+-.|...|     + +..|+|+.
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~-VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~  149 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGV-VYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQ  149 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCc-EEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEe
Confidence            56788999999999999998888654 555 778887 3    5677788889999898999876     1 22488876


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      --.    ..+++.-++.|+..-||+||.++|.=
T Consensus       150 DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  150 DVA----QPDQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             E-S----STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCC----ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence            543    23456677888889999999888764

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=95.85  E-value=0.027  Score=50.60  Aligned_cols=100  Identities=15%  Similarity=0.129  Sum_probs=74.5

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC---------CCCceEEeCCCCCCCC----------CC
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS---------IPGVTHIGGDMFNSIP----------AA  220 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~---------~~ri~~~~~d~~~~~p----------~~  220 (309)
                      +...||.+|||-=.....+... ++++ +.=+|+|++++..++         ..++++++.|+.+.+.          ..
T Consensus        81 g~~qvV~LGaGlDTr~~Rl~~~-~~~~-~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~  158 (260)
T TIGR00027        81 GIRQVVILGAGLDTRAYRLPWP-DGTR-VFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA  158 (260)
T ss_pred             CCcEEEEeCCccccHHHhcCCC-CCCe-EEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence            3467999999988888777422 2567 888888988875432         3689999999873321          12


Q ss_pred             -ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          221 -NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       221 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                       -++++-.++.+++++++.++|+.+.+...||+.|+ .|.+.+
T Consensus       159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~  200 (260)
T TIGR00027       159 PTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRP  200 (260)
T ss_pred             CeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccc
Confidence             36777899999999999999999999888887555 555544

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=95.81  E-value=0.02  Score=52.55  Aligned_cols=98  Identities=19%  Similarity=0.252  Sum_probs=63.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHh-------cCCCceEEEeec-hhHHhhCCC--------CCCceEEeCCCCCC--CC-
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQK-------HHFICEGINFDL-PEVVGEAPS--------IPGVTHIGGDMFNS--IP-  218 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~~D~-p~~~~~a~~--------~~ri~~~~~d~~~~--~p-  218 (309)
                      .....+|+|-.||+|.++.++.+.       .+..+ +.++|. +.++..++-        .....+..+|.+..  .. 
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~-i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~  122 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEIN-IYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK  122 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEE-EEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccce-eEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence            455678999999999999998874       46777 999998 444433321        13456888998865  32 


Q ss_pred             --CCceeeeh--hhhhcCC------------------hhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          219 --AANAIFMK--WVLATWT------------------DDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       219 --~~D~i~~~--~vlh~~~------------------d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                        ..|+|+++  +....|.                  ..+ ...+..+.+.|++||++.++
T Consensus       123 ~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~~G~~~~I  182 (311)
T PF02384_consen  123 NQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAE-YAFIEHALSLLKPGGRAAII  182 (311)
T ss_dssp             T--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHH-HHHHHHHHHTEEEEEEEEEE
T ss_pred             ccccccccCCCCccccccccccccccccccccCCCccchh-hhhHHHHHhhcccccceeEE
Confidence              24998865  2222111                  122 24778899999999986544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=95.80  E-value=0.012  Score=40.97  Aligned_cols=52  Identities=21%  Similarity=0.453  Sum_probs=38.8

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIG   71 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~   71 (309)
                      .+++.|..+|++.+    +++...+.+.++.|...|+|++....  .....|++|+.|
T Consensus        15 ~~~~~t~~~l~~~~----~~~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G   68 (68)
T PF13463_consen   15 SDGPMTQSDLAERL----GISKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG   68 (68)
T ss_dssp             -TS-BEHHHHHHHT----T--HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred             cCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence            47899999999999    99999999999999999999776532  112368998864

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=95.78  E-value=0.014  Score=42.21  Aligned_cols=52  Identities=23%  Similarity=0.328  Sum_probs=41.7

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.+..+|+..+    +++...+.+.|..|...|+++..     ++.|.+|+.|..++.
T Consensus        16 ~~~~~~~t~i~~~~----~L~~~~~~~yL~~L~~~gLI~~~-----~~~Y~lTekG~~~l~   67 (77)
T PF14947_consen   16 SKGGAKKTEIMYKA----NLNYSTLKKYLKELEEKGLIKKK-----DGKYRLTEKGKEFLE   67 (77)
T ss_dssp             -TT-B-HHHHHTTS----T--HHHHHHHHHHHHHTTSEEEE-----TTEEEE-HHHHHHHH
T ss_pred             HcCCCCHHHHHHHh----CcCHHHHHHHHHHHHHCcCeeCC-----CCEEEECccHHHHHH
Confidence            47999999999999    99999999999999999999764     689999999976654

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.78  E-value=0.12  Score=44.34  Aligned_cols=113  Identities=13%  Similarity=0.158  Sum_probs=83.0

Q ss_pred             HHHHhhcC--CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-----hhHHhhCCCCCCceEEeCCCCCCC----
Q 021707          149 TSVLDSYN--GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-----PEVVGEAPSIPGVTHIGGDMFNSI----  217 (309)
Q Consensus       149 ~~~~~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-----p~~~~~a~~~~ri~~~~~d~~~~~----  217 (309)
                      ..++..++  ....+.+||-+|..+|+....+..-.++-. +.++++     .+.+..+++++|+--+-+|...|+    
T Consensus        63 AaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~-iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~  141 (231)
T COG1889          63 AAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGR-IYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRH  141 (231)
T ss_pred             HHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCc-EEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhh
Confidence            34555554  267789999999999999999998888666 778887     356777888899999999998762    


Q ss_pred             --CCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCC
Q 021707          218 --PAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSN  266 (309)
Q Consensus       218 --p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~  266 (309)
                        +..|+|+.--.    .++++.-+..|+..-|++||.++|.=-...-+.+
T Consensus       142 ~Ve~VDviy~DVA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT  188 (231)
T COG1889         142 LVEKVDVIYQDVA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVT  188 (231)
T ss_pred             hcccccEEEEecC----CchHHHHHHHHHHHhcccCCeEEEEEEeeccccc
Confidence              22488875433    3456667778889999999977766544444443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=95.75  E-value=0.0073  Score=51.34  Aligned_cols=98  Identities=17%  Similarity=0.088  Sum_probs=63.1

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC------CC-Cceee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI------PA-ANAIF  224 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~------p~-~D~i~  224 (309)
                      .+.+|||+=||+|.++.+.+.+.  +++++.+|. +..+...+++       ++++++.+|.+..+      .. .|+|+
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf  119 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF  119 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence            35799999999999999999885  333899998 5555555442       57899999976532      22 49998


Q ss_pred             ehhhhhcCChhHHHHHHHHHH--HhcCCCcEEEEeccccC
Q 021707          225 MKWVLATWTDDECKLIMENCY--KALLAGGKLIACEPVLL  262 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~--~aL~pgG~l~i~e~~~~  262 (309)
                      +---.. .... ..++|..+.  ..|+++| ++|+|....
T Consensus       120 lDPPY~-~~~~-~~~~l~~l~~~~~l~~~~-~ii~E~~~~  156 (183)
T PF03602_consen  120 LDPPYA-KGLY-YEELLELLAENNLLNEDG-LIIIEHSKK  156 (183)
T ss_dssp             E--STT-SCHH-HHHHHHHHHHTTSEEEEE-EEEEEEETT
T ss_pred             ECCCcc-cchH-HHHHHHHHHHCCCCCCCE-EEEEEecCC
Confidence            753222 1211 356777776  6677777 566666544

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=95.73  E-value=0.051  Score=46.23  Aligned_cols=105  Identities=15%  Similarity=0.127  Sum_probs=68.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec--hhHH-----------hhCCC--CCCceEEeCCCCCC-CCCC-
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL--PEVV-----------GEAPS--IPGVTHIGGDMFNS-IPAA-  220 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~--p~~~-----------~~a~~--~~ri~~~~~d~~~~-~p~~-  220 (309)
                      +....+|+|+=.|.|.+..-+...- ..+ +.+.-.  .+..           ..+++  ..+++.+..+.... .|+. 
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~v-gp~-G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~  123 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAV-GPK-GKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKL  123 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhc-CCc-eeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcc
Confidence            5677899999999999998777543 333 433332  1221           11111  14555555555443 3333 


Q ss_pred             ceeeehhhhhc-----CChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          221 NAIFMKWVLAT-----WTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       221 D~i~~~~vlh~-----~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      |+++....-|+     +....+.++-+.++++|||||.+++.|......
T Consensus       124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG  172 (238)
T COG4798         124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPG  172 (238)
T ss_pred             cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCC
Confidence            77776544443     335567899999999999999999999887663

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=95.70  E-value=0.0085  Score=56.50  Aligned_cols=51  Identities=12%  Similarity=0.055  Sum_probs=42.0

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCC
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFN  215 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~  215 (309)
                      .+|||++||+|.++..+++.+.  + ++++|. +.+++.++++      ++++++.+|..+
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~-v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--R-VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            4799999999999999998764  5 999998 6677766643      589999999865

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.66  E-value=0.066  Score=45.27  Aligned_cols=99  Identities=17%  Similarity=0.293  Sum_probs=58.6

Q ss_pred             hhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeechhHHhhCCCCCCceEEeC-CCCCC---------CCC--
Q 021707          153 DSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGG-DMFNS---------IPA--  219 (309)
Q Consensus       153 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p~~~~~a~~~~ri~~~~~-d~~~~---------~p~--  219 (309)
                      +.+.-+.+..+|+|+||..|.++.-..++. |+-. +.++|+-++..    -..++++.+ |+.++         +|.  
T Consensus        62 dKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~-v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~  136 (232)
T KOG4589|consen   62 DKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGM-VLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPNRP  136 (232)
T ss_pred             hhccccCCCCEEEEccCCCChHHHHHHHhhCCCce-EEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCCCc
Confidence            344324567899999999999999888776 9888 99999844321    134555555 44332         343  


Q ss_pred             Cceeeehhhh---------hcCChhHHHHHHHHHHHhcCCCcEEEE
Q 021707          220 ANAIFMKWVL---------ATWTDDECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       220 ~D~i~~~~vl---------h~~~d~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                      .|+|+.-..-         |+-.-+-|..+|.-...-+.|+|.++.
T Consensus       137 VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvc  182 (232)
T KOG4589|consen  137 VDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVC  182 (232)
T ss_pred             ccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEE
Confidence            3666532110         111122344445444555678886654

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=95.66  E-value=0.012  Score=40.32  Aligned_cols=49  Identities=20%  Similarity=0.283  Sum_probs=42.3

Q ss_pred             hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ..+..+++.+..++|.|+.|||+.+    |+++..+.+-|+.|...|+|+...
T Consensus        10 p~R~~Il~~L~~~~~~t~~ela~~l----~~~~~t~s~hL~~L~~aGli~~~~   58 (61)
T PF12840_consen   10 PTRLRILRLLASNGPMTVSELAEEL----GISQSTVSYHLKKLEEAGLIEVER   58 (61)
T ss_dssp             HHHHHHHHHHHHCSTBEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCeEEec
Confidence            3456677766578999999999999    999999999999999999999875

...

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=95.66  E-value=0.033  Score=55.12  Aligned_cols=66  Identities=11%  Similarity=0.148  Sum_probs=44.3

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCC--------CceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC--------
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHF--------ICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS--------  216 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~--------  216 (309)
                      ...+|+|.|||+|.++.+++++.+.        .. ++++|. +..+..++..      ..+.+..+|+...        
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~-i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~  109 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELN-IYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESY  109 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceee-eeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccc
Confidence            4568999999999999999988753        34 788888 4455544321      2455666665432        


Q ss_pred             CCCCceeeeh
Q 021707          217 IPAANAIFMK  226 (309)
Q Consensus       217 ~p~~D~i~~~  226 (309)
                      .+..|+|+.+
T Consensus       110 ~~~fD~IIgN  119 (524)
T TIGR02987       110 LDLFDIVITN  119 (524)
T ss_pred             cCcccEEEeC
Confidence            1224998865

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.65  E-value=0.007  Score=49.44  Aligned_cols=55  Identities=29%  Similarity=0.380  Sum_probs=43.0

Q ss_pred             CceEEeCCCCCC-CC-C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          205 GVTHIGGDMFNS-IP-A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       205 ri~~~~~d~~~~-~p-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      .+.+++.-.++. +. + +|+|+..|++.|++-++-...++.+++.|+|||+|-|.=+
T Consensus        30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP   87 (185)
T COG4627          30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP   87 (185)
T ss_pred             ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence            345555433332 33 3 4999999999999999999999999999999999988644

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=95.61  E-value=0.027  Score=47.67  Aligned_cols=103  Identities=16%  Similarity=0.099  Sum_probs=63.2

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCc--------eEEEeec-hhHHhhCCCC-------CCceEEeCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFIC--------EGINFDL-PEVVGEAPSI-------PGVTHIGGD  212 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~--------~~~~~D~-p~~~~~a~~~-------~ri~~~~~d  212 (309)
                      ..++.... |.+...|+|-=||+|.++++.+...++..        .+++.|. +.+++.++++       ..|.+...|
T Consensus        18 ~~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D   96 (179)
T PF01170_consen   18 AALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWD   96 (179)
T ss_dssp             HHHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--
T ss_pred             HHHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecc
Confidence            33455554 77788999999999999998877665533        2789998 6677666542       568999999


Q ss_pred             CCCC-CCC--Cceeeehhhhhc-CCh-h----HHHHHHHHHHHhcCCCc
Q 021707          213 MFNS-IPA--ANAIFMKWVLAT-WTD-D----ECKLIMENCYKALLAGG  252 (309)
Q Consensus       213 ~~~~-~p~--~D~i~~~~vlh~-~~d-~----~~~~iL~~~~~aL~pgG  252 (309)
                      +.+. .+.  .|.|++.--.-. ... .    --.++++++.+.++|..
T Consensus        97 ~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~  145 (179)
T PF01170_consen   97 ARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRA  145 (179)
T ss_dssp             GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCE
T ss_pred             hhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCE
Confidence            9875 233  388887543321 111 1    23456788888888833

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=95.58  E-value=0.023  Score=50.87  Aligned_cols=54  Identities=13%  Similarity=0.140  Sum_probs=45.4

Q ss_pred             hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhch
Q 021707           12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGK   72 (309)
Q Consensus        12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~   72 (309)
                      +.+-..++.|+.|||+.+    |++.-.+.|+|..|+..|++.++.   .+++|++.+...
T Consensus        21 ~~l~~~~~l~l~eia~~l----gl~kstv~Rll~tL~~~G~l~~~~---~~~~Y~lG~~~~   74 (257)
T PRK15090         21 QALGEEREIGITELSQRV----MMSKSTVYRFLQTMKTLGYVAQEG---ESEKYSLTLKLF   74 (257)
T ss_pred             HHhhcCCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEcC---CCCcEEecHHHH
Confidence            333345689999999999    999999999999999999999874   257899998553

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=95.54  E-value=0.026  Score=44.65  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=39.3

Q ss_pred             hhhhhc-CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           10 RKKVRL-ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        10 ~~~~~l-~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ++..++ .++|.|+++||+.+    +.+.-.+.|-|.-|...|++.+..
T Consensus        32 v~~~LL~~~~~~tvdelae~l----nr~rStv~rsl~~L~~~GlV~Rek   76 (126)
T COG3355          32 VYKALLEENGPLTVDELAEIL----NRSRSTVYRSLQNLLEAGLVEREK   76 (126)
T ss_pred             HHHHHHhhcCCcCHHHHHHHH----CccHHHHHHHHHHHHHcCCeeeee
Confidence            344466 68999999999999    999999999999999999999876

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=95.49  E-value=0.067  Score=47.18  Aligned_cols=122  Identities=18%  Similarity=0.275  Sum_probs=84.3

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCC----CceEEEeech-hHHh-----hCCCCCCceE--EeCCCCCC---CCC-C--c
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHF----ICEGINFDLP-EVVG-----EAPSIPGVTH--IGGDMFNS---IPA-A--N  221 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~~D~p-~~~~-----~a~~~~ri~~--~~~d~~~~---~p~-~--D  221 (309)
                      +..+++|+|+|+-.=+..|+..+.+    ++ .+-+|.. .++.     ..++.+.+++  +++|+...   .|. +  =
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~r-yvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl  156 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLR-YVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL  156 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcce-eeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence            3678999999999988888887766    56 8899983 2332     2234455544  45787544   444 2  4


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec-cccCCCCC----chhhhhhhhcccHhhhc
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE-PVLLDDSN----ESQRTRALLEGDIFVMT  283 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e-~~~~~~~~----~~~~~~~~~~~dl~ml~  283 (309)
                      ++++...|-++++++|..+|.+++.+|.||-.+++.- ...+...-    .++. .....|.+|||.
T Consensus       157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae~Le~AYdDp~-gVTa~FnlNvLa  222 (321)
T COG4301         157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKPAERLEAAYDDPQ-GVTAEFNLNVLA  222 (321)
T ss_pred             EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCHHHHHHHhhcCcc-chHHHHHHHHHH
Confidence            5778899999999999999999999999998777653 33222110    1111 234578888887

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.47  E-value=0.04  Score=49.73  Aligned_cols=95  Identities=17%  Similarity=0.241  Sum_probs=54.6

Q ss_pred             cceEEEecCCccHH-HHHHHHhc-CCCceEEEeec-hhHHhhCCC--------CCCceEEeCCCCCC---CCCCceeeeh
Q 021707          161 VKRLVDVGGSAGDC-LRMILQKH-HFICEGINFDL-PEVVGEAPS--------IPGVTHIGGDMFNS---IPAANAIFMK  226 (309)
Q Consensus       161 ~~~vlDvG~G~G~~-~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~--------~~ri~~~~~d~~~~---~p~~D~i~~~  226 (309)
                      +.+|+=||||.=-+ ++.+++++ ++.. ++++|. |..++.+++        ..+++|+++|..+.   +...|+|++.
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~-v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGAR-VHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--E-EEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            46999999996554 44555544 6777 899998 555555543        37899999998653   3335888876


Q ss_pred             hhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          227 WVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      -..-. +.++=.++|.++.+.|+||.++++-
T Consensus       200 alVg~-~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  200 ALVGM-DAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             hhccc-ccchHHHHHHHHHhhCCCCcEEEEe
Confidence            55421 2222369999999999999988876

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional

Probab=95.46  E-value=0.026  Score=44.26  Aligned_cols=61  Identities=20%  Similarity=0.234  Sum_probs=49.9

Q ss_pred             hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707            5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus         5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      ..++.++.++...++.++.||++.+    ++++..+.+-|+.|...|+|....+++ .-.|++++.
T Consensus        16 ptRl~IL~~L~~~~~~~v~ela~~l----~lsqstvS~HL~~L~~AGLV~~~r~Gr-~~~Y~l~~~   76 (117)
T PRK10141         16 ETRLGIVLLLRESGELCVCDLCTAL----DQSQPKISRHLALLRESGLLLDRKQGK-WVHYRLSPH   76 (117)
T ss_pred             HHHHHHHHHHHHcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCceEEEEEcC-EEEEEECch
Confidence            4567788877667899999999999    999999999999999999998876321 235888763

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=95.41  E-value=0.023  Score=36.84  Aligned_cols=45  Identities=22%  Similarity=0.284  Sum_probs=38.0

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceee
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSE   55 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~   55 (309)
                      .++-++.++ .++|.++.||++.+    |+++..+.+-|+.|...|+|+.
T Consensus         3 ~R~~Il~~L-~~~~~~~~el~~~l----~~s~~~vs~hL~~L~~~glV~~   47 (47)
T PF01022_consen    3 TRLRILKLL-SEGPLTVSELAEEL----GLSQSTVSHHLKKLREAGLVEK   47 (47)
T ss_dssp             HHHHHHHHH-TTSSEEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHH-HhCCCchhhHHHhc----cccchHHHHHHHHHHHCcCeeC
Confidence            455566655 45999999999999    9999999999999999999863

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.41  E-value=0.026  Score=54.53  Aligned_cols=97  Identities=13%  Similarity=0.229  Sum_probs=66.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-h----hHHhhCCCCCCceEEeCCCCCC---CCCC-ceeeehhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-P----EVVGEAPSIPGVTHIGGDMFNS---IPAA-NAIFMKWV  228 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p----~~~~~a~~~~ri~~~~~d~~~~---~p~~-D~i~~~~v  228 (309)
                      +.....|+|..+|.|.|+.+|.+.    . +.++.. |    ..+..+-.+. .--+-+|+-+.   +|.. |++...++
T Consensus       363 ~~~iRNVMDMnAg~GGFAAAL~~~----~-VWVMNVVP~~~~ntL~vIydRG-LIG~yhDWCE~fsTYPRTYDLlHA~~l  436 (506)
T PF03141_consen  363 WGRIRNVMDMNAGYGGFAAALIDD----P-VWVMNVVPVSGPNTLPVIYDRG-LIGVYHDWCEAFSTYPRTYDLLHADGL  436 (506)
T ss_pred             ccceeeeeeecccccHHHHHhccC----C-ceEEEecccCCCCcchhhhhcc-cchhccchhhccCCCCcchhheehhhh
Confidence            445678999999999999999754    2 555554 2    2222111111 11122455454   6666 99999999


Q ss_pred             hhcCChh-HHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          229 LATWTDD-ECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       229 lh~~~d~-~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +..+.+. +...+|-++-|.|+|+|.++|-|.+
T Consensus       437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~~  469 (506)
T PF03141_consen  437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV  469 (506)
T ss_pred             hhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence            8776543 5678999999999999999998765

; GO: 0008168 methyltransferase activity

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=95.31  E-value=0.042  Score=44.52  Aligned_cols=58  Identities=16%  Similarity=0.074  Sum_probs=48.7

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhh
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLV   75 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~   75 (309)
                      +..+.-.+++.++.+||+.+    ++++..+.+.++.|...|+|....    .+.|++|+.|..+.
T Consensus        13 I~~l~~~~~~~~~~ela~~l----~vs~~svs~~l~~L~~~Gli~~~~----~~~i~LT~~G~~~a   70 (142)
T PRK03902         13 IYLLIEEKGYARVSDIAEAL----SVHPSSVTKMVQKLDKDEYLIYEK----YRGLVLTPKGKKIG   70 (142)
T ss_pred             HHHHHhcCCCcCHHHHHHHh----CCChhHHHHHHHHHHHCCCEEEec----CceEEECHHHHHHH
Confidence            34444457899999999999    999999999999999999998664    56799999986554

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=95.21  E-value=0.047  Score=51.68  Aligned_cols=91  Identities=13%  Similarity=0.083  Sum_probs=68.9

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC----CCCceeeehhhhh
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI----PAANAIFMKWVLA  230 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~----p~~D~i~~~~vlh  230 (309)
                      .+|||.-||+|..+++.+.+.++.+.++..|. |..++.++++      .++++..+|....+    ...|+|.+-- . 
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f-  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F-  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence            58999999999999999998766544999998 6677666543      45788888887542    2259888733 2 


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                        ...  ...|..+.+.++++|.|.+.-
T Consensus       124 --Gs~--~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       124 --GTP--APFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             --CCc--HHHHHHHHHhcccCCEEEEEe
Confidence              211  368888999999999999984

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=95.19  E-value=0.029  Score=36.38  Aligned_cols=43  Identities=12%  Similarity=0.134  Sum_probs=36.0

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCcee
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFS   54 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~   54 (309)
                      .-++..+..++++|..|||+.+    |++...+.+.++-|...|+++
T Consensus         6 ~~Il~~l~~~~~~t~~ela~~~----~is~~tv~~~l~~L~~~g~I~   48 (48)
T PF13412_consen    6 RKILNYLRENPRITQKELAEKL----GISRSTVNRYLKKLEEKGLIE   48 (48)
T ss_dssp             HHHHHHHHHCTTS-HHHHHHHH----TS-HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHh----CCCHHHHHHHHHHHHHCcCcC
Confidence            3456666678889999999999    999999999999999999985

...

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.19  E-value=0.13  Score=44.86  Aligned_cols=99  Identities=17%  Similarity=0.182  Sum_probs=72.1

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeech--------hHHhhCCCCCCceEEeCCCCCCC----C----CC-ce
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP--------EVVGEAPSIPGVTHIGGDMFNSI----P----AA-NA  222 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p--------~~~~~a~~~~ri~~~~~d~~~~~----p----~~-D~  222 (309)
                      ++.+++|||.=+|.-+.+++.+-|+--+++.+|.+        .+.+.+.-...|+++.|+..+.+    +    .+ |.
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf  152 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF  152 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence            46899999999999999999999874348999983        33333444589999999887652    2    12 77


Q ss_pred             eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +|+=+     ..........++-+-+++||.|++-...++.
T Consensus       153 aFvDa-----dK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G  188 (237)
T KOG1663|consen  153 AFVDA-----DKDNYSNYYERLLRLLRVGGVIVVDNVLWPG  188 (237)
T ss_pred             EEEcc-----chHHHHHHHHHHHhhcccccEEEEeccccCC
Confidence            76532     3334557788888899999977777666665

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.19  E-value=0.085  Score=45.61  Aligned_cols=100  Identities=14%  Similarity=0.104  Sum_probs=72.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-----CCCceEEeCCCCC---CCCC--Cceeeehh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-----IPGVTHIGGDMFN---SIPA--ANAIFMKW  227 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-----~~ri~~~~~d~~~---~~p~--~D~i~~~~  227 (309)
                      ..++.+||.||=|-|.....+.++.|..+ .++---|.|..+.++     +.+|....|-+.+   .+|.  .|-|+.-.
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDT  177 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDT  177 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeec
Confidence            46779999999999999999999988888 555555999998875     3778888775533   2444  36665432


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      .-..  -++....-+.+.+-|||+|.+-.+...
T Consensus       178 y~e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~  208 (271)
T KOG1709|consen  178 YSEL--YEDLRHFHQHVVRLLKPEGVFSYFNGL  208 (271)
T ss_pred             hhhH--HHHHHHHHHHHhhhcCCCceEEEecCc
Confidence            2111  145677888999999999988766544

>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein

Probab=95.17  E-value=0.045  Score=40.78  Aligned_cols=67  Identities=24%  Similarity=0.265  Sum_probs=51.8

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      .+.-++..+...++.|..+||+.+    ++++..+.+.++-|+..|+|.....  +.....|.+|+.+..+..
T Consensus        11 ~~~~il~~l~~~~~~~~~~la~~~----~~s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~~   79 (101)
T smart00347       11 TQFLVLRILYEEGPLSVSELAKRL----GVSPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELIE   79 (101)
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHH----CCCchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHHH
Confidence            445566666667889999999999    9999999999999999999987642  111236888888766554

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.15  E-value=0.14  Score=44.43  Aligned_cols=100  Identities=15%  Similarity=0.173  Sum_probs=66.6

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-h----hHHhhCCC---CCCceEEeCCCCCCC-CC--Cceeeehhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-P----EVVGEAPS---IPGVTHIGGDMFNSI-PA--ANAIFMKWVL  229 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p----~~~~~a~~---~~ri~~~~~d~~~~~-p~--~D~i~~~~vl  229 (309)
                      ..++.||||-++.+...+.+.+|..+ ++..|. +    .++...++   .++|+...+|-+..+ ++  .|+++.... 
T Consensus        17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~-~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM-   94 (226)
T COG2384          17 GARIADIGSDHAYLPIYLVKNNPAST-AVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM-   94 (226)
T ss_pred             CCceeeccCchhHhHHHHHhcCCcce-EEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence            34599999999999999999999999 999997 3    33333333   389999999998773 33  376653221 


Q ss_pred             hcCChhHHHHHHHH---------------------HHHhcCCCcEEEEeccccCCCC
Q 021707          230 ATWTDDECKLIMEN---------------------CYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       230 h~~~d~~~~~iL~~---------------------~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                         ...-..+||.+                     +++-|..+++-++.|..+.+++
T Consensus        95 ---GG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~ileE~~  148 (226)
T COG2384          95 ---GGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETILEEDG  148 (226)
T ss_pred             ---cHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeeeecccC
Confidence               11222233333                     3444445677777777777764

>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR

Probab=95.13  E-value=0.039  Score=47.58  Aligned_cols=66  Identities=12%  Similarity=0.167  Sum_probs=51.6

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc----cccCceEEcChhchhhhc
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE----FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~----~~~~~~y~~t~~~~~l~~   76 (309)
                      +..++..+...++.|..|||+.+    |+++..+.+.|+.|...|+|+....    ++..-.|.+|+.+..+..
T Consensus         3 r~~IL~~L~~~~~~t~~eLA~~l----gis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~~   72 (203)
T TIGR02702         3 KEDILSYLLKQGQATAAALAEAL----AISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQFP   72 (203)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhcc
Confidence            34566666677899999999999    9999999999999999999987621    111224899988876554

All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.04  E-value=0.15  Score=44.79  Aligned_cols=101  Identities=20%  Similarity=0.240  Sum_probs=66.7

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec--hhHHhhCCCCCCceEEeC-CCCCCCC----C-C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL--PEVVGEAPSIPGVTHIGG-DMFNSIP----A-A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~--p~~~~~a~~~~ri~~~~~-d~~~~~p----~-~  220 (309)
                      ...++.|+-..++..+||||++||.|+..++++.  ++.+.++|.  -+.....+..+||..++. |+....|    + .
T Consensus        68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~  145 (245)
T COG1189          68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP  145 (245)
T ss_pred             HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence            3456666523457899999999999999999884  323888887  455555666788877764 4443222    2 2


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEE
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                      |++++--.+     --...+|-.+...++|++.++.
T Consensus       146 d~~v~DvSF-----ISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         146 DLIVIDVSF-----ISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             CeEEEEeeh-----hhHHHHHHHHHHhcCCCceEEE
Confidence            666642221     1235788888889998876654

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=95.00  E-value=0.013  Score=50.29  Aligned_cols=94  Identities=13%  Similarity=0.126  Sum_probs=59.4

Q ss_pred             CC-CcceEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhCCCCCCceEEe-CCCCCCCCCCceeeehhhhhcCCh
Q 021707          158 FK-GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEAPSIPGVTHIG-GDMFNSIPAANAIFMKWVLATWTD  234 (309)
Q Consensus       158 ~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a~~~~ri~~~~-~d~~~~~p~~D~i~~~~vlh~~~d  234 (309)
                      |. .+.++||+|+|.|..+..++..+.+   +..-+++ .|..+.++. +..+.. .+..+---+.|+|.+.+.|.-..+
T Consensus       109 w~~~~~~lLDlGAGdGeit~~m~p~fee---vyATElS~tMr~rL~kk-~ynVl~~~ew~~t~~k~dli~clNlLDRc~~  184 (288)
T KOG3987|consen  109 WGQEPVTLLDLGAGDGEITLRMAPTFEE---VYATELSWTMRDRLKKK-NYNVLTEIEWLQTDVKLDLILCLNLLDRCFD  184 (288)
T ss_pred             cCCCCeeEEeccCCCcchhhhhcchHHH---HHHHHhhHHHHHHHhhc-CCceeeehhhhhcCceeehHHHHHHHHhhcC
Confidence            53 3679999999999999888866544   3333442 344444332 222221 122111111399999999965554


Q ss_pred             hHHHHHHHHHHHhcCC-CcEEEEe
Q 021707          235 DECKLIMENCYKALLA-GGKLIAC  257 (309)
Q Consensus       235 ~~~~~iL~~~~~aL~p-gG~l~i~  257 (309)
                      +  -++|+.++.+|+| +|++++.
T Consensus       185 p--~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  185 P--FKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             h--HHHHHHHHHHhccCCCcEEEE
Confidence            4  5899999999999 7877654

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=94.96  E-value=0.16  Score=48.05  Aligned_cols=103  Identities=16%  Similarity=0.168  Sum_probs=65.3

Q ss_pred             CcceEEEecCCccHHHHHH--------HHh-------cCCCceEEEeechh-----HHhhCCC---------------CC
Q 021707          160 GVKRLVDVGGSAGDCLRMI--------LQK-------HHFICEGINFDLPE-----VVGEAPS---------------IP  204 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l--------~~~-------~p~~~~~~~~D~p~-----~~~~a~~---------------~~  204 (309)
                      +..+|+|+|||+|..+..+        .++       -|+.+ +..-|+|.     +......               ..
T Consensus        63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~q-v~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~  141 (386)
T PLN02668         63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFS-AFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH  141 (386)
T ss_pred             cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcce-EEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC
Confidence            4568999999999765433        232       24677 88888851     2221110               11


Q ss_pred             C---ceEEeCCCCCC-CCCC--ceeeehhhhhcCCh------------------------------------hHHHHHHH
Q 021707          205 G---VTHIGGDMFNS-IPAA--NAIFMKWVLATWTD------------------------------------DECKLIME  242 (309)
Q Consensus       205 r---i~~~~~d~~~~-~p~~--D~i~~~~vlh~~~d------------------------------------~~~~~iL~  242 (309)
                      +   +.-++|.|+.. +|..  ++++.++.||-++.                                    .|-..+|+
T Consensus       142 ~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~  221 (386)
T PLN02668        142 RSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLR  221 (386)
T ss_pred             CceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence            2   34455888876 7873  99999999985431                                    01234555


Q ss_pred             HHHHhcCCCcEEEEeccccCC
Q 021707          243 NCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       243 ~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      .=++-|.|||++++.=.-.+.
T Consensus       222 ~Ra~ELvpGG~mvl~~~Gr~~  242 (386)
T PLN02668        222 ARAQEMKRGGAMFLVCLGRTS  242 (386)
T ss_pred             HHHHHhccCcEEEEEEecCCC
Confidence            557789999999988666653

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=94.89  E-value=0.028  Score=52.82  Aligned_cols=100  Identities=17%  Similarity=0.114  Sum_probs=74.0

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CCC--Cceeeehhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IPA--ANAIFMKWVL  229 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p~--~D~i~~~~vl  229 (309)
                      ..+++|+|||.|.....+... ...+ .+++|. +.-+.++..       ..+..++.+|+.+. +++  +|.+.+..+.
T Consensus       111 ~~~~~~~~~g~~~~~~~i~~f-~~~~-~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~  188 (364)
T KOG1269|consen  111 GSKVLDVGTGVGGPSRYIAVF-KKAG-VVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV  188 (364)
T ss_pred             cccccccCcCcCchhHHHHHh-ccCC-ccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence            347999999999998877654 3556 788887 222222221       14445588888876 554  4999988888


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .+.++.  ..++++++++++|||.++..|.+....
T Consensus       189 ~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~  221 (364)
T KOG1269|consen  189 CHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAK  221 (364)
T ss_pred             ccCCcH--HHHHHHHhcccCCCceEEeHHHHHhhh
Confidence            888877  489999999999999999999876554

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=94.86  E-value=0.011  Score=45.11  Aligned_cols=91  Identities=16%  Similarity=0.136  Sum_probs=39.6

Q ss_pred             EEecCCccHHHHHHHHhcCCCc--eEEEeechh----HHhhCCC---CCCceEEeCCCCCC---CC-C-Cceeeehhhhh
Q 021707          165 VDVGGSAGDCLRMILQKHHFIC--EGINFDLPE----VVGEAPS---IPGVTHIGGDMFNS---IP-A-ANAIFMKWVLA  230 (309)
Q Consensus       165 lDvG~G~G~~~~~l~~~~p~~~--~~~~~D~p~----~~~~a~~---~~ri~~~~~d~~~~---~p-~-~D~i~~~~vlh  230 (309)
                      |+||+..|..+..+++..+...  +++++|...    .-+..++   .++++++.+|..+.   ++ . .|++++=- -|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH   79 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence            6899999999998888776542  289999833    3333332   37899999998654   22 2 37777532 12


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                        ..+.+.+-++.+.+.|+|||.+++.|
T Consensus        80 --~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   80 --SYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             --CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence              22456788999999999999888765

>PHA00738 putative HTH transcription regulator

Probab=94.81  E-value=0.052  Score=41.54  Aligned_cols=62  Identities=19%  Similarity=0.041  Sum_probs=50.4

Q ss_pred             hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707            5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus         5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ..+..+++++..++++++.+|++.+    +++...+.+-|+.|...|+|.....++ .-.|++++..
T Consensus        12 ptRr~IL~lL~~~e~~~V~eLae~l----~lSQptVS~HLKvLreAGLV~srK~Gr-~vyY~Ln~~~   73 (108)
T PHA00738         12 ILRRKILELIAENYILSASLISHTL----LLSYTTVLRHLKILNEQGYIELYKEGR-TLYAKIRENS   73 (108)
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHhh----CCCHHHHHHHHHHHHHCCceEEEEECC-EEEEEECCCc
Confidence            3567788877666689999999999    999999999999999999999887331 2457777633

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.81  E-value=0.089  Score=42.77  Aligned_cols=108  Identities=15%  Similarity=0.136  Sum_probs=72.9

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IPA  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p~  219 (309)
                      +.+++-+. -.+..+.+|+|+|.|....+.++.. -.. .+++++ |..++..+-       ..+..|..-|+++. +..
T Consensus        62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~-a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d  138 (199)
T KOG4058|consen   62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRP-AVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD  138 (199)
T ss_pred             HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCc-CCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence            44555554 3445799999999999999888876 455 899998 777766542       26788888888874 544


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      ...++++.+=     .-...+--+++.-|+.|.+++.+-+-+|+-
T Consensus       139 y~~vviFgae-----s~m~dLe~KL~~E~p~nt~vvacRFPLP~w  178 (199)
T KOG4058|consen  139 YRNVVIFGAE-----SVMPDLEDKLRTELPANTRVVACRFPLPTW  178 (199)
T ss_pred             cceEEEeehH-----HHHhhhHHHHHhhCcCCCeEEEEecCCCcc
Confidence            4222222211     112233445666788899999999888883

>COG4742 Predicted transcriptional regulator [Transcription]

Probab=94.81  E-value=0.042  Score=48.95  Aligned_cols=55  Identities=20%  Similarity=0.367  Sum_probs=49.9

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcC
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~   77 (309)
                      +|.+||.|.+||-..+    ++++..+..=++-|...|+|.++     ++.|++|++|..++..
T Consensus        21 lL~egPkti~EI~~~l----~vs~~ai~pqiKkL~~~~LV~~~-----~~~Y~LS~~G~iiv~k   75 (260)
T COG4742          21 LLKEGPKTIEEIKNEL----NVSSSAILPQIKKLKDKGLVVQE-----GDRYSLSSLGKIIVEK   75 (260)
T ss_pred             HHHhCCCCHHHHHHHh----CCCcHHHHHHHHHHhhCCCEEec-----CCEEEecchHHHHHHH
Confidence            3568999999999999    99999999999999999999999     5899999999877764

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=94.75  E-value=0.054  Score=50.37  Aligned_cols=99  Identities=22%  Similarity=0.156  Sum_probs=78.1

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC---Cceeeehhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA---ANAIFMKWV  228 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~---~D~i~~~~v  228 (309)
                      .+.+|||.=+|.|.+++.++++. ..+ ++.+|+ |+.++..+++       .+|..+.||..+..+.   +|-|+|.+.
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g-~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p  265 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKG-RPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP  265 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcC-Cce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence            47899999999999999999775 445 899998 7777766542       6699999999886444   799999875


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCC
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSN  266 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~  266 (309)
                      -      .+.+.+-.+.+.+++||.+...+.+..++..
T Consensus       266 ~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~~  297 (341)
T COG2520         266 K------SAHEFLPLALELLKDGGIIHYYEFVPEDDIE  297 (341)
T ss_pred             C------cchhhHHHHHHHhhcCcEEEEEeccchhhcc
Confidence            3      2346677777888889999999888877753

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=94.72  E-value=0.027  Score=43.22  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=26.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL  193 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~  193 (309)
                      .....++|||||.|.+.--|.+.  +.+ +.++|.
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~~E--Gy~-G~GiD~   88 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILNSE--GYP-GWGIDA   88 (112)
T ss_pred             CCCCceEEccCCchHHHHHHHhC--CCC-cccccc
Confidence            34678999999999999988877  445 888886

; GO: 0008168 methyltransferase activity

>PRK11050 manganese transport regulator MntR; Provisional

Probab=94.67  E-value=0.072  Score=43.80  Aligned_cols=58  Identities=17%  Similarity=0.147  Sum_probs=47.8

Q ss_pred             hhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           11 KKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        11 ~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      ...+...++.+..+||+.+    ++++..+.++++.|...|+|....    ...+.+|+.+..+..
T Consensus        43 ~~~l~~~~~~t~~eLA~~l----~is~stVsr~l~~Le~~GlI~r~~----~~~v~LT~~G~~l~~  100 (152)
T PRK11050         43 ADLIAEVGEARQVDIAARL----GVSQPTVAKMLKRLARDGLVEMRP----YRGVFLTPEGEKLAQ  100 (152)
T ss_pred             HHHHHhcCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEec----CCceEECchHHHHHH
Confidence            3334346889999999999    999999999999999999998765    457889988766543

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.61  E-value=0.075  Score=49.83  Aligned_cols=110  Identities=15%  Similarity=0.283  Sum_probs=76.8

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec---hhHHhhCC-------------CCCCceEEeCCCC
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL---PEVVGEAP-------------SIPGVTHIGGDMF  214 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~---p~~~~~a~-------------~~~ri~~~~~d~~  214 (309)
                      +.+.+ +.......+|+|+|.|.....++....-.+ -+++++   |.-++...             +...++.+.+++.
T Consensus       184 i~dEl-~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~-svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~  261 (419)
T KOG3924|consen  184 IVDEL-KLGPADVFMDLGSGVGQLVCFVAAYAGCKK-SVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL  261 (419)
T ss_pred             HHHHh-ccCCCCcccCCCcccchhhHHHHHhhcccc-ccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence            44444 367788999999999998877776554444 566665   43332221             1256888899998


Q ss_pred             CC------CCCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          215 NS------IPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       215 ~~------~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      .+      ++++++|+++++.  |+++...+ +.++..-+++|-+++-.+++.+.+.
T Consensus       262 ~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~gtrIiS~~~L~~r~r  315 (419)
T KOG3924|consen  262 DPKRVTEIQTEATVIFVNNVA--FDPELKLR-SKEILQKCKDGTRIISSKPLVPRPR  315 (419)
T ss_pred             CHHHHHHHhhcceEEEEeccc--CCHHHHHh-hHHHHhhCCCcceEecccccccccc
Confidence            65      4557999999986  34444333 3488888999999999999998543

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=94.60  E-value=0.061  Score=47.82  Aligned_cols=47  Identities=17%  Similarity=0.183  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhch
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGK   72 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~   72 (309)
                      +++.|+.|||+.+    |++.-.+.|+|..|+..|+++++     +++|++.+...
T Consensus        22 ~~~~~l~eia~~l----glpksT~~RlL~tL~~~G~l~~~-----~~~Y~lG~~~~   68 (248)
T TIGR02431        22 RPRLTLTDVAEAT----GLTRAAARRFLLTLVELGYVTSD-----GRLFWLTPRVL   68 (248)
T ss_pred             CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeC-----CCEEEecHHHH
Confidence            5689999999999    99999999999999999999875     47899998553

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=94.51  E-value=0.065  Score=43.08  Aligned_cols=47  Identities=19%  Similarity=0.261  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      +++.|.+|||+..    ++|+..++.+|..|...|++....+  ..|.|.++.
T Consensus        23 ~~~~s~~~ia~~~----~ip~~~l~kil~~L~~~glv~s~~G--~~Ggy~l~~   69 (135)
T TIGR02010        23 TGPVTLADISERQ----GISLSYLEQLFAKLRKAGLVKSVRG--PGGGYQLGR   69 (135)
T ss_pred             CCcCcHHHHHHHH----CcCHHHHHHHHHHHHHCCceEEEeC--CCCCEeccC
Confidence            3589999999999    9999999999999999999987542  145688775

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=94.50  E-value=0.069  Score=47.96  Aligned_cols=52  Identities=15%  Similarity=0.190  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLV   75 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~   75 (309)
                      ++++|..|||+.+    |++...+.|+|..|+..|++.++.   .++.|++++....+.
T Consensus        24 ~~~ls~~eia~~l----gl~kstv~RlL~tL~~~g~v~~~~---~~~~Y~Lg~~~~~l~   75 (263)
T PRK09834         24 DGGATVGLLAELT----GLHRTTVRRLLETLQEEGYVRRSA---SDDSFRLTLKVRQLS   75 (263)
T ss_pred             CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEec---CCCcEEEcHHHHHHH
Confidence            3569999999999    999999999999999999999875   257899998664443

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=94.49  E-value=0.061  Score=47.91  Aligned_cols=46  Identities=17%  Similarity=0.283  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ++++.|||+++    |++.-.+.|+|..|+..|++++++   .+++|++++-.
T Consensus        19 ~l~l~ela~~~----glpksT~~RlL~tL~~~G~v~~d~---~~g~Y~Lg~~~   64 (246)
T COG1414          19 GLSLAELAERL----GLPKSTVHRLLQTLVELGYVEQDP---EDGRYRLGPRL   64 (246)
T ss_pred             CCCHHHHHHHh----CcCHHHHHHHHHHHHHCCCEEEcC---CCCcEeehHHH
Confidence            45699999999    999999999999999999999997   25689999855

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.47  E-value=0.048  Score=49.95  Aligned_cols=96  Identities=11%  Similarity=0.086  Sum_probs=73.9

Q ss_pred             cceEEEecCCccHHHHHHHHhcC-CCceEEEeechhHHhhCCC----C-----CCceEEeCCCCC-CCCC----------
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHH-FICEGINFDLPEVVGEAPS----I-----PGVTHIGGDMFN-SIPA----------  219 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~p~~~~~a~~----~-----~ri~~~~~d~~~-~~p~----------  219 (309)
                      ...||-+|||-=.-+-.+-  .| .++ +.=+|.|++++..++    .     .++++++.|+++ +++.          
T Consensus        93 ~~qvViLgaGLDTRayRl~--~~~~~~-vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGLDTRAYRLD--WPKGTR-VFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEeccccccceeecC--CCCCCe-EEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            5789999999665554443  33 355 777788999987654    2     389999999994 4432          


Q ss_pred             C-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          220 A-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       220 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      . -++++-.++-+++++++.++|++|....+||..++....
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence            1 367888999999999999999999999999987776654

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=94.47  E-value=0.034  Score=39.24  Aligned_cols=44  Identities=14%  Similarity=0.179  Sum_probs=35.7

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +-+.+-.++.+|..|||..+    ++++..++.+|+.|+..|.|.+..
T Consensus         5 i~~~l~~~~~~S~~eLa~~~----~~s~~~ve~mL~~l~~kG~I~~~~   48 (69)
T PF09012_consen    5 IRDYLRERGRVSLAELAREF----GISPEAVEAMLEQLIRKGYIRKVD   48 (69)
T ss_dssp             HHHHHHHS-SEEHHHHHHHT----T--HHHHHHHHHHHHCCTSCEEEE
T ss_pred             HHHHHHHcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCcEEEec
Confidence            33444457899999999999    999999999999999999999875

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>PRK11569 transcriptional repressor IclR; Provisional

Probab=94.40  E-value=0.076  Score=48.02  Aligned_cols=48  Identities=8%  Similarity=0.156  Sum_probs=42.9

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      +++.|+.|||+.+    |++.-.+.|+|..|+..|++++++   ..++|++.+..
T Consensus        41 ~~~~~lseia~~l----glpksTv~RlL~tL~~~G~l~~~~---~~~~Y~lG~~l   88 (274)
T PRK11569         41 NGSVALTELAQQA----GLPNSTTHRLLTTMQQQGFVRQVG---ELGHWAIGAHA   88 (274)
T ss_pred             CCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEcC---CCCeEecCHHH
Confidence            4689999999999    999999999999999999999875   25899998755

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=94.37  E-value=0.12  Score=44.83  Aligned_cols=66  Identities=21%  Similarity=0.267  Sum_probs=52.3

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc----cccCceEEcChhchhhhc
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE----FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~----~~~~~~y~~t~~~~~l~~   76 (309)
                      +.-+..++...+|+|+.|||+.+    |+++..+++-|+.|++.|+++....    ++..-.|++|..+...+.
T Consensus        13 r~~il~lL~~~g~~sa~elA~~L----gis~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f~   82 (218)
T COG2345          13 RERILELLKKSGPVSADELAEEL----GISPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFP   82 (218)
T ss_pred             HHHHHHHHhccCCccHHHHHHHh----CCCHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhcc
Confidence            44455666678999999999999    9999999999999999999987542    122236999998876444

>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]

Probab=94.35  E-value=0.1  Score=43.01  Aligned_cols=63  Identities=13%  Similarity=0.077  Sum_probs=53.4

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      ++..+..+.-..+++...+||+.+    ++++..+..+++-|...|+++..+    .+.+.+|+.|.....
T Consensus        11 YL~~Iy~l~~~~~~~~~~diA~~L----~Vsp~sVt~ml~rL~~~GlV~~~~----y~gi~LT~~G~~~a~   73 (154)
T COG1321          11 YLETIYELLEEKGFARTKDIAERL----KVSPPSVTEMLKRLERLGLVEYEP----YGGVTLTEKGREKAK   73 (154)
T ss_pred             HHHHHHHHHhccCcccHHHHHHHh----CCCcHHHHHHHHHHHHCCCeEEec----CCCeEEChhhHHHHH
Confidence            344455555567899999999999    999999999999999999999986    788999998875554

>PRK10857 DNA-binding transcriptional regulator IscR; Provisional

Probab=94.23  E-value=0.076  Score=44.27  Aligned_cols=47  Identities=21%  Similarity=0.260  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      +++.|+++||+..    ++|+.++..+|..|...|+|....+  ..|.|.+..
T Consensus        23 ~~~vs~~eIA~~~----~ip~~~l~kIl~~L~~aGLv~s~rG--~~GGy~Lar   69 (164)
T PRK10857         23 AGPVPLADISERQ----GISLSYLEQLFSRLRKNGLVSSVRG--PGGGYLLGK   69 (164)
T ss_pred             CCcCcHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeCCC--CCCCeeccC
Confidence            3589999999999    9999999999999999999997642  146688765

>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A

Probab=94.18  E-value=0.041  Score=40.09  Aligned_cols=66  Identities=27%  Similarity=0.322  Sum_probs=49.4

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccccc---CceEEcChhchhhhc
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRG---ERKYSLTEIGKSLVT   76 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~---~~~y~~t~~~~~l~~   76 (309)
                      ++++...+...+.++..+|.+.+    |++...|..-|..|...|+|+......+   .-.|++|+.|+....
T Consensus         2 Rl~Il~~L~~~~~~~f~~L~~~l----~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~Gr~~~~   70 (80)
T PF13601_consen    2 RLAILALLYANEEATFSELKEEL----GLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDKGREAFE   70 (80)
T ss_dssp             HHHHHHHHHHHSEEEHHHHHHHT----T--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HHHHHHHH
T ss_pred             HHHHHHHHhhcCCCCHHHHHHHh----CcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHHHHHHHH
Confidence            45666766667889999999999    9999999999999999999988764211   124999998865443

>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator)

Probab=94.17  E-value=0.072  Score=42.39  Aligned_cols=48  Identities=29%  Similarity=0.317  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ++.|.++||+.+    ++++..++++|+.|...|++....+  ..|.|.++...
T Consensus        24 ~~~s~~eia~~~----~i~~~~v~~il~~L~~~gli~~~~g--~~ggy~l~~~~   71 (132)
T TIGR00738        24 GPVSVKEIAERQ----GISRSYLEKILRTLRRAGLVESVRG--PGGGYRLARPP   71 (132)
T ss_pred             CcCcHHHHHHHH----CcCHHHHHHHHHHHHHCCcEEeccC--CCCCccCCCCH
Confidence            489999999999    9999999999999999999987531  13567776533

This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=94.08  E-value=0.059  Score=45.65  Aligned_cols=85  Identities=14%  Similarity=0.237  Sum_probs=61.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC---------CCceEEeCCCCCC-----C------CC
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI---------PGVTHIGGDMFNS-----I------PA  219 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~---------~ri~~~~~d~~~~-----~------p~  219 (309)
                      +...||-+|||-=.....+...+++++ .+-+|+|++++..++.         .++++++.|+.+.     +      +.
T Consensus        78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~-~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~  156 (183)
T PF04072_consen   78 GARQVVNLGAGLDTRAYRLDNPAGGVR-WFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD  156 (183)
T ss_dssp             TESEEEEET-TT--HHHHHHHTTTTEE-EEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred             CCcEEEEcCCCCCchHHHhhccccceE-EEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence            445899999999999999999888888 8999999988776542         3367899999854     1      12


Q ss_pred             C-ceeeehhhhhcCChhHHHHHHHHHH
Q 021707          220 A-NAIFMKWVLATWTDDECKLIMENCY  245 (309)
Q Consensus       220 ~-D~i~~~~vlh~~~d~~~~~iL~~~~  245 (309)
                      . -++++=.++.+++++++..+|+.+.
T Consensus       157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ia  183 (183)
T PF04072_consen  157 RPTLFIAEGVLMYLSPEQVDALLRAIA  183 (183)
T ss_dssp             SEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred             CCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence            2 4677778899999999999998763

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>COG1959 Predicted transcriptional regulator [Transcription]

Probab=94.06  E-value=0.092  Score=43.09  Aligned_cols=47  Identities=26%  Similarity=0.267  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      ++.|+++||+..    ++++.+|.+++..|...|+|+...+-  .|.|++...
T Consensus        24 ~~~s~~~IA~~~----~is~~~L~kil~~L~kaGlV~S~rG~--~GGy~Lar~   70 (150)
T COG1959          24 GPVSSAEIAERQ----GISPSYLEKILSKLRKAGLVKSVRGK--GGGYRLARP   70 (150)
T ss_pred             CcccHHHHHHHh----CcCHHHHHHHHHHHHHcCCEEeecCC--CCCccCCCC
Confidence            389999999999    99999999999999999999887631  567888753

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=94.01  E-value=0.13  Score=47.27  Aligned_cols=66  Identities=21%  Similarity=0.179  Sum_probs=52.6

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFN  215 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~  215 (309)
                      .+.+++.+. ...+..++|.=+|.|.++.++++..|+.+ ++++|. |.+++.+++.     .|++++.+++.+
T Consensus         9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~-vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006         9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGR-LIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            456777774 55667999999999999999999988888 999998 6777666542     578888887754

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=94.01  E-value=0.13  Score=45.65  Aligned_cols=104  Identities=12%  Similarity=0.022  Sum_probs=64.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCCCCC--Cceeeehhhhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNSIPA--ANAIFMKWVLA  230 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~~p~--~D~i~~~~vlh  230 (309)
                      ..+.+|+|||||---++.-.....|+++ .++.|+ ...++....     ..+.+....|.....|+  +|+.++.-++|
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~-Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp  182 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGAT-YIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLP  182 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-E-EEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcE-EEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence            3478999999999999998888888998 999998 444444332     25677777899888555  49999998888


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      -+..++. ..-.++.+.+. .-.++|..+...=.+
T Consensus       183 ~le~q~~-g~g~~ll~~~~-~~~~vVSfPtrSL~g  215 (251)
T PF07091_consen  183 CLERQRR-GAGLELLDALR-SPHVVVSFPTRSLGG  215 (251)
T ss_dssp             HHHHHST-THHHHHHHHSC-ESEEEEEEES-----
T ss_pred             HHHHHhc-chHHHHHHHhC-CCeEEEecccccccc
Confidence            7655442 33334444554 235666666655444

>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR

Probab=93.97  E-value=0.14  Score=39.87  Aligned_cols=64  Identities=17%  Similarity=0.134  Sum_probs=50.1

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhcC
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~~   77 (309)
                      ++..+..+++.|..|||+.+    +++...+.+.++-|...|+|++....  ...-.+.+|+.|..+...
T Consensus        33 iL~~l~~~~~~t~~ela~~~----~~~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~~   98 (118)
T TIGR02337        33 ILRILAEQGSMEFTQLANQA----CILRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYAS   98 (118)
T ss_pred             HHHHHHHcCCcCHHHHHHHh----CCCchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence            33334457899999999999    99999999999999999999986421  112369999999776654

This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=93.97  E-value=0.076  Score=50.39  Aligned_cols=102  Identities=16%  Similarity=0.118  Sum_probs=73.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCC-ceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCCCC-------CC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFI-CEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNSIP-------AA  220 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~~p-------~~  220 (309)
                      ..++.+|||+=|=||.++...+..  ++ + +|.+|+ ...+.-++++        +++.|+.+|.|+.+.       ..
T Consensus       215 ~~~GkrvLNlFsYTGgfSv~Aa~g--GA~~-vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~f  291 (393)
T COG1092         215 LAAGKRVLNLFSYTGGFSVHAALG--GASE-VTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKF  291 (393)
T ss_pred             hccCCeEEEecccCcHHHHHHHhc--CCCc-eEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcc
Confidence            334789999999999999988866  44 5 899999 4566666553        678999999997522       14


Q ss_pred             ceeeehh------hhhcCC-hhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          221 NAIFMKW------VLATWT-DDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       221 D~i~~~~------vlh~~~-d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      |+|++=-      -=..|. ..+-.+++..+.+.|+|||.++++.....
T Consensus       292 DlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~  340 (393)
T COG1092         292 DLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH  340 (393)
T ss_pred             cEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            9998621      001122 23567899999999999999998855443

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=93.94  E-value=0.1  Score=36.00  Aligned_cols=37  Identities=22%  Similarity=0.264  Sum_probs=33.2

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ++|++..|||+.+    |++....+++|..|...|.|+..+
T Consensus        13 ~~p~~T~eiA~~~----gls~~~aR~yL~~Le~eG~V~~~~   49 (62)
T PF04703_consen   13 NGPLKTREIADAL----GLSIYQARYYLEKLEKEGKVERSP   49 (62)
T ss_dssp             TS-EEHHHHHHHH----TS-HHHHHHHHHHHHHCTSEEEES
T ss_pred             CCCCCHHHHHHHh----CCCHHHHHHHHHHHHHCCCEEEec
Confidence            7899999999999    999999999999999999998765

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=93.85  E-value=0.22  Score=46.42  Aligned_cols=105  Identities=17%  Similarity=0.240  Sum_probs=62.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHH--------hc--------CCCceEEEeechh-----HHhhCCC-------CCC--ce
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQ--------KH--------HFICEGINFDLPE-----VVGEAPS-------IPG--VT  207 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~--------~~--------p~~~~~~~~D~p~-----~~~~a~~-------~~r--i~  207 (309)
                      .++.-+|+|+||.+|..+..+..        ++        |.++ ++.-|+|.     +......       ..+  +.
T Consensus        14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~-v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~   92 (334)
T PF03492_consen   14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQ-VFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVS   92 (334)
T ss_dssp             TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEE-EEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEE
T ss_pred             CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEE-EEeCCCCCccHHHHHHhChhhhhccCCCceEEEE
Confidence            45667999999999997765543        23        2356 78888852     2221111       133  45


Q ss_pred             EEeCCCCCC-CCCC--ceeeehhhhhcCC-------h------------------------------hHHHHHHHHHHHh
Q 021707          208 HIGGDMFNS-IPAA--NAIFMKWVLATWT-------D------------------------------DECKLIMENCYKA  247 (309)
Q Consensus       208 ~~~~d~~~~-~p~~--D~i~~~~vlh~~~-------d------------------------------~~~~~iL~~~~~a  247 (309)
                      -++|.|+.. +|..  |+++.++.||-++       +                              .|-..+|+.=++-
T Consensus        93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E  172 (334)
T PF03492_consen   93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE  172 (334)
T ss_dssp             EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence            567999986 7774  9999999998432       1                              2234455555677


Q ss_pred             cCCCcEEEEeccccCC
Q 021707          248 LLAGGKLIACEPVLLD  263 (309)
Q Consensus       248 L~pgG~l~i~e~~~~~  263 (309)
                      |+|||++++.=.-.++
T Consensus       173 Lv~GG~mvl~~~gr~~  188 (334)
T PF03492_consen  173 LVPGGRMVLTFLGRDE  188 (334)
T ss_dssp             EEEEEEEEEEEEE-ST
T ss_pred             eccCcEEEEEEeeccc
Confidence            8999999998776666

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=93.75  E-value=0.11  Score=46.89  Aligned_cols=48  Identities=13%  Similarity=-0.015  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ++++|+.|||+.+    |++.-.+.|+|..|+..|+|.+++   ..++|++.+-.
T Consensus        38 ~~~~tl~eIa~~l----glpkStv~RlL~tL~~~G~l~~~~---~~~~Y~lG~~l   85 (271)
T PRK10163         38 GGSSSVSDISLNL----DLPLSTTFRLLKVLQAADFVYQDS---QLGWWHIGLGV   85 (271)
T ss_pred             CCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEcC---CCCeEEecHHH
Confidence            3579999999999    999999999999999999998875   25789999754

>KOG2730 consensus Methylase [General function prediction only]

Probab=93.71  E-value=0.041  Score=47.65  Aligned_cols=54  Identities=20%  Similarity=0.244  Sum_probs=45.2

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS  216 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~  216 (309)
                      ....|+|.-||-|...+.++..+|.   ++.+|. |--++.|+.+       +||+|++||+++.
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~---VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~  155 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPY---VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL  155 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCe---EEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence            4578999999999999999999886   888998 5557777653       8999999999764

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=93.62  E-value=0.15  Score=46.78  Aligned_cols=66  Identities=27%  Similarity=0.228  Sum_probs=48.8

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFN  215 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~  215 (309)
                      ...+++.+. ......++|.=-|.|.++.++++++|+.+ ++++|. |.+++.+++.     +|+.++.++|-+
T Consensus         9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~-li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen    9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGR-LIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-E-EEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCe-EEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            456777775 66678999999999999999999999988 999999 7788666542     789999888753

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=93.59  E-value=0.18  Score=33.92  Aligned_cols=48  Identities=25%  Similarity=0.327  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      +++.|..+|++.+    +++...+.+.|+.|...|++.....+ ....|.++.
T Consensus         8 ~~~~~~~~i~~~l----~is~~~v~~~l~~L~~~g~i~~~~~~-~~~~~~~~~   55 (66)
T smart00418        8 EGELCVCELAEIL----GLSQSTVSHHLKKLREAGLVESRREG-KRVYYSLTD   55 (66)
T ss_pred             cCCccHHHHHHHH----CCCHHHHHHHHHHHHHCCCeeeeecC-CEEEEEEch
Confidence            7889999999999    99999999999999999999866421 124566665

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=93.52  E-value=0.057  Score=52.25  Aligned_cols=53  Identities=23%  Similarity=0.265  Sum_probs=43.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDM  213 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~  213 (309)
                      .+....++||-||+|.++.++++..-  + ++++++ |+.++.|+++      .+.+|++|-.
T Consensus       381 l~~~k~llDv~CGTG~iglala~~~~--~-ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqa  440 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARGVK--R-VIGVEISPDAVEDAEKNAQINGISNATFIVGQA  440 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhcccc--c-eeeeecChhhcchhhhcchhcCccceeeeecch
Confidence            55668999999999999999997753  4 899998 7788777654      7889999943

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=93.46  E-value=0.081  Score=48.14  Aligned_cols=98  Identities=17%  Similarity=0.235  Sum_probs=66.7

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCCCC------CCceee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNSIP------AANAIF  224 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~~p------~~D~i~  224 (309)
                      +..+|||+=|=+|.++...+... -.+ ++.+|. ...++.++++        ++++++++|.|+.+.      ..|+|+
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gG-A~~-v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II  200 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGG-AKE-VVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII  200 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTT-ESE-EEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCC-CCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence            35799999999999999876542 335 899998 4566665542        689999999987421      249988


Q ss_pred             eh---hhhhcCC-hhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          225 MK---WVLATWT-DDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       225 ~~---~vlh~~~-d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      +-   +.=..+. ..+-.++++.+.+.|+|||.|+.+-.
T Consensus       201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            62   1111122 23457899999999999999876643

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=93.42  E-value=0.15  Score=34.52  Aligned_cols=44  Identities=14%  Similarity=0.133  Sum_probs=39.2

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +.+.+-.++.+|++|||+.+    ++++.-++|=|..|...|++.+..
T Consensus         5 Il~~l~~~~~~s~~ela~~~----~VS~~TiRRDl~~L~~~g~i~r~~   48 (57)
T PF08220_consen    5 ILELLKEKGKVSVKELAEEF----GVSEMTIRRDLNKLEKQGLIKRTH   48 (57)
T ss_pred             HHHHHHHcCCEEHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEc
Confidence            44555567899999999999    999999999999999999999885

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=93.19  E-value=0.36  Score=41.69  Aligned_cols=100  Identities=18%  Similarity=0.174  Sum_probs=55.1

Q ss_pred             cceEEEecCCccHHHHH---HHHhc-CCCceEEEeec--hhHHhhCCC----CCCceEEeCCCCCC---CCC------C-
Q 021707          161 VKRLVDVGGSAGDCLRM---ILQKH-HFICEGINFDL--PEVVGEAPS----IPGVTHIGGDMFNS---IPA------A-  220 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~---l~~~~-p~~~~~~~~D~--p~~~~~a~~----~~ri~~~~~d~~~~---~p~------~-  220 (309)
                      +..|+++|--.|.-+.-   +++.+ ++.+ ++++|+  +..-..+.+    .+||+++.||-.++   .+.      . 
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~-VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGK-VIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---E-EEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCce-EEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            57999999877665543   44555 7777 999998  232222333    38999999998754   111      1 


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      -++++-..-|..  +.+.+.|+.....++||+++++-|.....
T Consensus       112 ~vlVilDs~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~~~  152 (206)
T PF04989_consen  112 PVLVILDSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTIIED  152 (206)
T ss_dssp             SEEEEESS------SSHHHHHHHHHHT--TT-EEEETSHHHHH
T ss_pred             ceEEEECCCccH--HHHHHHHHHhCccCCCCCEEEEEeccccc
Confidence            233333443433  34578888899999999999999876543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor

Probab=93.04  E-value=0.18  Score=32.71  Aligned_cols=42  Identities=14%  Similarity=0.213  Sum_probs=36.7

Q ss_pred             hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +.+..+++.|..+|++.+    ++++..+.+.|..|...|++....
T Consensus         7 ~~l~~~~~~s~~~l~~~l----~~s~~tv~~~l~~L~~~g~i~~~~   48 (53)
T smart00420        7 ELLAQQGKVSVEELAELL----GVSEMTIRRDLNKLEEQGLLTRVH   48 (53)
T ss_pred             HHHHHcCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEee
Confidence            333346789999999999    999999999999999999998874

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=93.04  E-value=0.34  Score=41.15  Aligned_cols=100  Identities=14%  Similarity=0.052  Sum_probs=62.3

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC------CCCCceeee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS------IPAANAIFM  225 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~------~p~~D~i~~  225 (309)
                      .+.++||+=+|+|.++.+.+.++-. + ++.+|. ...+..+++       ..+++++..|....      .+..|+|++
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRGA~-~-~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl  120 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRGAA-R-VVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL  120 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCCCc-e-EEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence            4689999999999999999999633 4 788887 333433332       37888888887732      112599987


Q ss_pred             hhhhh-cCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          226 KWVLA-TWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       226 ~~vlh-~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      =--.+ ..-+.+..-++-.-...|+|+|.++ +|.-..
T Consensus       121 DPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv-~E~~~~  157 (187)
T COG0742         121 DPPYAKGLLDKELALLLLEENGWLKPGALIV-VEHDKD  157 (187)
T ss_pred             CCCCccchhhHHHHHHHHHhcCCcCCCcEEE-EEeCCC
Confidence            54443 1222221222222456689998555 444433

>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family

Probab=92.93  E-value=0.19  Score=34.40  Aligned_cols=47  Identities=13%  Similarity=0.181  Sum_probs=40.6

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +..++++.-.+++++..+||+.+    ++++..+..+++-|...|+|+..+
T Consensus        10 L~~Iy~l~~~~~~v~~~~iA~~L----~vs~~tvt~ml~~L~~~GlV~~~~   56 (60)
T PF01325_consen   10 LKAIYELSEEGGPVRTKDIAERL----GVSPPTVTEMLKRLAEKGLVEYEP   56 (60)
T ss_dssp             HHHHHHHHHCTSSBBHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEET
T ss_pred             HHHHHHHHcCCCCccHHHHHHHH----CCChHHHHHHHHHHHHCCCEEecC
Confidence            44566666677899999999999    999999999999999999999875

The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....

>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial

Probab=92.89  E-value=0.14  Score=40.78  Aligned_cols=47  Identities=28%  Similarity=0.413  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      +++.|+.|||+.+    ++++..+.+.|+.|...|++....+  ..+.|.+..
T Consensus        23 ~~~~s~~eia~~l----~is~~~v~~~l~~L~~~Gli~~~~g--~~ggy~l~~   69 (130)
T TIGR02944        23 SQPYSAAEIAEQT----GLNAPTVSKILKQLSLAGIVTSKRG--VEGGYTLAR   69 (130)
T ss_pred             CCCccHHHHHHHH----CcCHHHHHHHHHHHHHCCcEEecCC--CCCChhhcC
Confidence            4689999999999    9999999999999999999986531  135566643

The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.

>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element

Probab=92.85  E-value=0.2  Score=37.37  Aligned_cols=47  Identities=23%  Similarity=0.292  Sum_probs=41.4

Q ss_pred             HHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           22 VSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        22 ~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +.+||+.+    ++++..+.+.++.|...|+|....    +..|.+|+.+..+..
T Consensus         2 ~~ela~~l----~is~stvs~~l~~L~~~glI~r~~----~~~~~lT~~g~~~~~   48 (96)
T smart00529        2 TSEIAERL----NVSPPTVTQMLKKLEKDGLVEYEP----YRGITLTEKGRRLAR   48 (96)
T ss_pred             HHHHHHHh----CCChHHHHHHHHHHHHCCCEEEcC----CCceEechhHHHHHH
Confidence            56899999    999999999999999999999986    568999998876653

iron dependent repressor

>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress

Probab=92.79  E-value=0.24  Score=35.75  Aligned_cols=64  Identities=11%  Similarity=0.120  Sum_probs=50.5

Q ss_pred             hhhhhhhhhhcC-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhh
Q 021707            5 ECRDGRKKVRLA-NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSL   74 (309)
Q Consensus         5 ~~~~g~~~~~l~-~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l   74 (309)
                      +.+..++++... +.|+...+||+.+    ++++..++--|..|.++|||+...  +..+.|..|..+-.+
T Consensus         8 ~IL~alV~~Y~~~~~PVgSk~ia~~l----~~s~aTIRN~M~~Le~lGlve~~p--~~s~GriPT~~aYr~   72 (78)
T PF03444_consen    8 EILKALVELYIETGEPVGSKTIAEEL----GRSPATIRNEMADLEELGLVESQP--HPSGGRIPTDKAYRA   72 (78)
T ss_pred             HHHHHHHHHHHhcCCCcCHHHHHHHH----CCChHHHHHHHHHHHHCCCccCCC--CCCCCCCcCHHHHHH
Confidence            456778888776 4699999999999    999999999999999999998532  013567777766433

Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=92.76  E-value=0.63  Score=42.57  Aligned_cols=96  Identities=16%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec--------hhHHhhCCC------------------------------
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL--------PEVVGEAPS------------------------------  202 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~--------p~~~~~a~~------------------------------  202 (309)
                      ..+||-=|||.|.++..|+..++.++ +-  ++        .-++...+.                              
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~~~q-GN--EfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD  227 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGFKCQ-GN--EFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPD  227 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhccccc-cc--HHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcc
Confidence            57899999999999999999988876 43  22        112221111                              


Q ss_pred             ---------CCCceEEeCCCCCCCC--C---C-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          203 ---------IPGVTHIGGDMFNSIP--A---A-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       203 ---------~~ri~~~~~d~~~~~p--~---~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                               ....+.-+|||.+-.+  .   . |+|+..+.+.  +.....+-|..|++.|+|||.++=+-+++
T Consensus       228 ~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLl  299 (369)
T KOG2798|consen  228 IHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLL  299 (369)
T ss_pred             ccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEecccee
Confidence                     0234556789987533  2   2 8888876653  34557889999999999999888666653

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.72  E-value=0.071  Score=51.38  Aligned_cols=113  Identities=15%  Similarity=0.154  Sum_probs=71.9

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IP  218 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p  218 (309)
                      ..+++.++ ..+..+++|.=||.|.++..++++.  .+ ++++|. ++.++.|+++      ++++|+++|..+.   +.
T Consensus       283 ~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~--~~-V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~  358 (432)
T COG2265         283 ETALEWLE-LAGGERVLDLYCGVGTFGLPLAKRV--KK-VHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW  358 (432)
T ss_pred             HHHHHHHh-hcCCCEEEEeccCCChhhhhhcccC--CE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence            33444443 4556799999999999999999543  34 999998 7777776642      6799999998764   21


Q ss_pred             ---CCceeeehhhhhcCChhHHH-HHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhc
Q 021707          219 ---AANAIFMKWVLATWTDDECK-LIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMT  283 (309)
Q Consensus       219 ---~~D~i~~~~vlh~~~d~~~~-~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~  283 (309)
                         ..|.|+.     |-|..-+. .+++.+.+ ++|-..++|.  +-       |.   .-..|+..|+
T Consensus       359 ~~~~~d~Vvv-----DPPR~G~~~~~lk~l~~-~~p~~IvYVS--CN-------P~---TlaRDl~~L~  409 (432)
T COG2265         359 EGYKPDVVVV-----DPPRAGADREVLKQLAK-LKPKRIVYVS--CN-------PA---TLARDLAILA  409 (432)
T ss_pred             ccCCCCEEEE-----CCCCCCCCHHHHHHHHh-cCCCcEEEEe--CC-------HH---HHHHHHHHHH
Confidence               1377665     33332233 44444443 5666666664  11       11   2357887787

>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed

Probab=92.72  E-value=0.19  Score=41.31  Aligned_cols=47  Identities=19%  Similarity=0.140  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      +++.|+++||+..    ++++.+|+.+|..|...|+|+...+  ..|.|+++.
T Consensus        22 ~~~~s~~eIA~~~----~is~~~L~kIl~~L~~aGlv~S~rG--~~GGy~La~   68 (153)
T PRK11920         22 GKLSRIPEIARAY----GVSELFLFKILQPLVEAGLVETVRG--RNGGVRLGR   68 (153)
T ss_pred             CCcCcHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeecC--CCCCeeecC
Confidence            4578999999999    9999999999999999999988763  146788875

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=92.57  E-value=1.2  Score=39.93  Aligned_cols=90  Identities=17%  Similarity=0.183  Sum_probs=63.6

Q ss_pred             HHHHHHhhcCCccc----HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeech-----hHHhhCCCC
Q 021707          134 GLMRRAISGVSVPF----MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLP-----EVVGEAPSI  203 (309)
Q Consensus       134 ~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p-----~~~~~a~~~  203 (309)
                      +.|-.+|...++-.    +..++..++ ...+.+|++-|.|+|.++.++++.- |.-+ ..-+|.-     .+.++-+++
T Consensus        76 ELWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGh-l~tfefH~~Ra~ka~eeFr~h  153 (314)
T KOG2915|consen   76 ELWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGH-LYTFEFHETRAEKALEEFREH  153 (314)
T ss_pred             HHhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcc-eEEEEecHHHHHHHHHHHHHh
Confidence            44666777777632    445777776 7788999999999999999999985 6656 8888883     233333333


Q ss_pred             ---CCceEEeCCCCCC-CCC----Cceeee
Q 021707          204 ---PGVTHIGGDMFNS-IPA----ANAIFM  225 (309)
Q Consensus       204 ---~ri~~~~~d~~~~-~p~----~D~i~~  225 (309)
                         +++++...|.-.. ++.    +|.|++
T Consensus       154 gi~~~vt~~hrDVc~~GF~~ks~~aDaVFL  183 (314)
T KOG2915|consen  154 GIGDNVTVTHRDVCGSGFLIKSLKADAVFL  183 (314)
T ss_pred             CCCcceEEEEeecccCCccccccccceEEE
Confidence               7888888887554 322    477775

>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B

Probab=92.51  E-value=0.14  Score=34.77  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=31.8

Q ss_pred             CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           20 LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        20 ~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .|..|||+.+    ++++..+.+.++.|...|+|++..
T Consensus        22 ~t~~~la~~l----~~~~~~vs~~v~~L~~~Glv~r~~   55 (62)
T PF12802_consen   22 LTQSELAERL----GISKSTVSRIVKRLEKKGLVERER   55 (62)
T ss_dssp             EEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred             cCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEeC
Confidence            8999999999    999999999999999999999875

...

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=92.34  E-value=0.31  Score=33.75  Aligned_cols=47  Identities=30%  Similarity=0.397  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      ++.+..||++.+    +++...+.+.|+.|...|++...... ....|++++
T Consensus        19 ~~~~~~ei~~~~----~i~~~~i~~~l~~L~~~g~i~~~~~~-~~~~~~~~~   65 (78)
T cd00090          19 GPLTVSELAERL----GLSQSTVSRHLKKLEEAGLVESRREG-RRVYYSLTD   65 (78)
T ss_pred             CCcCHHHHHHHH----CcCHhHHHHHHHHHHHCCCeEEEEec-cEEEEEeCC
Confidence            349999999999    99999999999999999999876421 135678876

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional

Probab=92.16  E-value=0.37  Score=42.02  Aligned_cols=69  Identities=17%  Similarity=0.158  Sum_probs=50.7

Q ss_pred             cchhhhhhhhhhcC--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707            3 DNECRDGRKKVRLA--NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus         3 ~~~~~~g~~~~~l~--~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +-+|+.-+..+...  ...+|..|||+.+    ++++..+.|.|+.|...|++++.... ....+++|+.+..+..
T Consensus         3 ~~~~Lk~iallg~l~~~~~IS~~eLA~~L----~iS~~Tvsr~Lk~LEe~GlI~R~~~~-r~~~v~LTekG~~ll~   73 (217)
T PRK14165          3 DIEALKKLALLGAVNNTVKISSSEFANHT----GTSSKTAARILKQLEDEGYITRTIVP-RGQLITITEKGLDVLY   73 (217)
T ss_pred             hhHHHHHHHHHhccCCCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEEcC-CceEEEECHHHHHHHH
Confidence            33444444443322  3468999999999    99999999999999999999887521 1357899988866553

>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor

Probab=92.12  E-value=0.4  Score=31.88  Aligned_cols=36  Identities=17%  Similarity=0.220  Sum_probs=32.8

Q ss_pred             CCC-CHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           18 TPL-SVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        18 ~~~-t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +.+ |..|||+..    +++...+++.+..|...|++....
T Consensus        18 ~~l~s~~~la~~~----~vs~~tv~~~l~~L~~~g~i~~~~   54 (60)
T smart00345       18 DKLPSERELAAQL----GVSRTTVREALSRLEAEGLVQRRP   54 (60)
T ss_pred             CcCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEec
Confidence            445 899999999    999999999999999999998765

>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure

Probab=91.95  E-value=0.2  Score=37.16  Aligned_cols=58  Identities=28%  Similarity=0.339  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccC--ceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGE--RKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~--~~y~~t~~~~~l~~   76 (309)
                      ..|+....||.+.+ |  |+++..|.+-|+.|...|+|++......+  -.|++|+.|..|..
T Consensus        15 ~~g~~rf~el~~~l-~--~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~~   74 (90)
T PF01638_consen   15 FQGPMRFSELQRRL-P--GISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELLP   74 (90)
T ss_dssp             TTSSEEHHHHHHHS-T--TS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHHH
T ss_pred             HhCCCcHHHHHHhc-c--hhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHHH
Confidence            45999999999998 5  78999999999999999999886421111  25999999987764

The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.

>PRK11512 DNA-binding transcriptional repressor MarR; Provisional

Probab=91.76  E-value=0.38  Score=38.91  Aligned_cols=57  Identities=14%  Similarity=0.122  Sum_probs=46.0

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.|..|||+.+    ++++..+.++++-|+..|+|.+...  |...-.+.+|+.|..+..
T Consensus        51 ~~~~~t~~eLa~~l----~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~l~LT~~G~~~~~  109 (144)
T PRK11512         51 CAACITPVELKKVL----SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICE  109 (144)
T ss_pred             HcCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEeccCcccCCeeEeEEChhHHHHHH
Confidence            46789999999999    9999999999999999999998652  111234788888876654

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=91.70  E-value=0.076  Score=49.88  Aligned_cols=61  Identities=20%  Similarity=0.224  Sum_probs=42.3

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDM  213 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~  213 (309)
                      .+.+++.++ ..+. +|+|+=||.|.++..+++.+.  + ++++|. +.+++.|+++      ++++|+.++.
T Consensus       186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~-V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~  253 (352)
T PF05958_consen  186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--K-VIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA  253 (352)
T ss_dssp             HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred             HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--e-EEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence            445555654 4333 799999999999999997764  3 899998 7777777642      7899998764

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK11014 transcriptional repressor NsrR; Provisional

Probab=91.63  E-value=0.32  Score=39.32  Aligned_cols=46  Identities=17%  Similarity=0.193  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      .+.+.++||+..    |+++..+++.|..|...|+++...+-  .|.|.+..
T Consensus        24 ~~~s~~~ia~~~----~is~~~vrk~l~~L~~~Glv~s~~G~--~GG~~l~~   69 (141)
T PRK11014         24 RMTSISEVTEVY----GVSRNHMVKIINQLSRAGYVTAVRGK--NGGIRLGK   69 (141)
T ss_pred             CccCHHHHHHHH----CcCHHHHHHHHHHHHhCCEEEEecCC--CCCeeecC
Confidence            478999999999    99999999999999999999887621  35677764

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein

Probab=91.60  E-value=0.35  Score=41.62  Aligned_cols=55  Identities=27%  Similarity=0.365  Sum_probs=44.6

Q ss_pred             hhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           11 KKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        11 ~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ...+..+++.+..|||+.+    ++++..+.+.|..|...|++.+.+.  ....|.+|+.|
T Consensus       149 L~~l~~~g~~s~~eia~~l----~is~stv~r~L~~Le~~GlI~r~~~--r~~~~~lT~~G  203 (203)
T TIGR01884       149 LEVLKAEGEKSVKNIAKKL----GKSLSTISRHLRELEKKGLVEQKGR--KGKRYSLTKLG  203 (203)
T ss_pred             HHHHHHcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEcC--CccEEEeCCCC
Confidence            3333345789999999999    9999999999999999999998851  14578888754

Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.

>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain

Probab=91.53  E-value=0.39  Score=36.10  Aligned_cols=45  Identities=7%  Similarity=0.039  Sum_probs=40.0

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT   68 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t   68 (309)
                      ..++|..|||+.+    |++...+.|.|..|...|+|...+   +-+.|+.+
T Consensus        45 ~~~is~~eLa~~~----g~sr~tVsr~L~~Le~~GlI~r~~---~~~~~~~n   89 (95)
T TIGR01610        45 QDRVTATVIAELT----GLSRTHVSDAIKSLARRRIIFRQG---MMGIVGVN   89 (95)
T ss_pred             CCccCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeeeec---CCceeecC
Confidence            4689999999999    999999999999999999999875   24778877

This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.

>COG4190 Predicted transcriptional regulator [Transcription]

Probab=91.44  E-value=0.32  Score=38.55  Aligned_cols=46  Identities=17%  Similarity=0.255  Sum_probs=41.1

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +-+++++..++|.|..|+|+..    |-+...+.|-|+.|...|++....
T Consensus        67 leLl~~Ia~~~P~Si~ElAe~v----gRdv~nvhr~Ls~l~~~GlI~fe~  112 (144)
T COG4190          67 LELLELIAQEEPASINELAELV----GRDVKNVHRTLSTLADLGLIFFEE  112 (144)
T ss_pred             HHHHHHHHhcCcccHHHHHHHh----CcchHHHHHHHHHHHhcCeEEEec
Confidence            3466777778999999999999    999999999999999999998775

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=91.29  E-value=0.22  Score=45.07  Aligned_cols=101  Identities=17%  Similarity=0.144  Sum_probs=67.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhH-HhhCCC----------CCCceEEeCCCCCC---CCC--Cc
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEV-VGEAPS----------IPGVTHIGGDMFNS---IPA--AN  221 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~-~~~a~~----------~~ri~~~~~d~~~~---~p~--~D  221 (309)
                      ..++.+++-||+|.|.+..+..++ +.+..+..+|.... ++.-++          .++|.++.||-+..   .+.  .|
T Consensus       119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d  197 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD  197 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence            456789999999999999999988 66654677777443 333222          38999999997654   433  38


Q ss_pred             eeeehhhhhcCChhH---HHHHHHHHHHhcCCCcEEEEeccc
Q 021707          222 AIFMKWVLATWTDDE---CKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~---~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +|+.--.=- ..+..   -...+.-+.++|||||.+++..-.
T Consensus       198 Vii~dssdp-vgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec  238 (337)
T KOG1562|consen  198 VIITDSSDP-VGPACALFQKPYFGLVLDALKGDGVVCTQGEC  238 (337)
T ss_pred             EEEEecCCc-cchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence            887532110 01111   134555678899999999887643

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=91.18  E-value=2.1  Score=40.28  Aligned_cols=110  Identities=18%  Similarity=0.206  Sum_probs=70.5

Q ss_pred             hhcCCCCCcceEEEecCCccHHHHHHHHhcCC--CceEEEeec-hhHHhhCCC----C--CCceEEeCCCCCC---CCC-
Q 021707          153 DSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF--ICEGINFDL-PEVVGEAPS----I--PGVTHIGGDMFNS---IPA-  219 (309)
Q Consensus       153 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-p~~~~~a~~----~--~ri~~~~~d~~~~---~p~-  219 (309)
                      ..++ -..+.+|+|..++.|.=+..+++..++  .. ++.+|. +.-+...++    .  .++..+..|....   .+. 
T Consensus       150 ~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~i-V~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~  227 (355)
T COG0144         150 LVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAI-VVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGG  227 (355)
T ss_pred             HHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCce-EEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccccc
Confidence            3443 556789999999999999999998876  34 589998 333333322    1  4466777765422   222 


Q ss_pred             --Cceeee------hhhhh-------cCChh-------HHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 --ANAIFM------KWVLA-------TWTDD-------ECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 --~D~i~~------~~vlh-------~~~d~-------~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                        +|.|++      ..+++       .|..+       --.+||+.+.+.|+|||.|+-..-.+...
T Consensus       228 ~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e  294 (355)
T COG0144         228 EKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE  294 (355)
T ss_pred             CcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence              466663      23332       33332       24689999999999999887665444433

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.99  E-value=0.08  Score=43.75  Aligned_cols=99  Identities=16%  Similarity=0.124  Sum_probs=66.0

Q ss_pred             cceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC---------CCCceEEeCCCCCC---CCC--Cceee
Q 021707          161 VKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPS---------IPGVTHIGGDMFNS---IPA--ANAIF  224 (309)
Q Consensus       161 ~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~---------~~ri~~~~~d~~~~---~p~--~D~i~  224 (309)
                      +.+|+++||| +|..+..++...|... +.+-|= ...++..++         ..++..+..+....   +..  .|+|+
T Consensus        30 g~~ilelgggft~laglmia~~a~~~~-v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   30 GRRILELGGGFTGLAGLMIACKAPDSS-VWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             HHHHHHhcCchhhhhhhheeeecCCce-EEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            4689999999 6667777777778877 888785 333333222         14454444444433   112  49999


Q ss_pred             ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      +...+-  -++-...+.+.|+..|+|.|+-++..+-..
T Consensus       109 aADClF--fdE~h~sLvdtIk~lL~p~g~Al~fsPRRg  144 (201)
T KOG3201|consen  109 AADCLF--FDEHHESLVDTIKSLLRPSGRALLFSPRRG  144 (201)
T ss_pred             eccchh--HHHHHHHHHHHHHHHhCcccceeEecCccc
Confidence            988762  445556888999999999999777654433

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=90.88  E-value=0.99  Score=40.14  Aligned_cols=99  Identities=15%  Similarity=0.017  Sum_probs=61.7

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC------------CCceEEeCCCCCC------CCC-C
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI------------PGVTHIGGDMFNS------IPA-A  220 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~------------~ri~~~~~d~~~~------~p~-~  220 (309)
                      +..+||++|+|+|..++..+. ....+ ++.-|.|.++...+..            ..+....-++-++      .|. .
T Consensus        86 ~~~~vlELGsGtglvG~~aa~-~~~~~-v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~  163 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAAL-LLGAE-VVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPF  163 (248)
T ss_pred             cceeEEEecCCccHHHHHHHH-Hhcce-eccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcc
Confidence            356899999999965555544 34667 8888887666554321            2455555444433      334 6


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      |+|+.+.++++-..-  ..+++-++.-|..++.+++.-....
T Consensus       164 DlilasDvvy~~~~~--e~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  164 DLILASDVVYEEESF--EGLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             cEEEEeeeeecCCcc--hhHHHHHHHHHhcCCeEEEEEeccc
Confidence            999999888643322  3556666667777775555544444

>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance

Probab=90.74  E-value=0.21  Score=33.65  Aligned_cols=40  Identities=18%  Similarity=0.282  Sum_probs=35.3

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +-..++.|..+||+.+    +++...+.++++-|...|++++..
T Consensus        12 l~~~~~~~~~~la~~~----~~~~~~~t~~i~~L~~~g~I~r~~   51 (59)
T PF01047_consen   12 LYENGGITQSELAEKL----GISRSTVTRIIKRLEKKGLIERER   51 (59)
T ss_dssp             HHHHSSEEHHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHcCCCCHHHHHHHH----CCChhHHHHHHHHHHHCCCEEecc
Confidence            3346789999999999    999999999999999999998875

This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=90.72  E-value=0.47  Score=44.97  Aligned_cols=61  Identities=5%  Similarity=0.012  Sum_probs=53.1

Q ss_pred             CCceEEeCCCCCC---CCC-C-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          204 PGVTHIGGDMFNS---IPA-A-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       204 ~ri~~~~~d~~~~---~p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +||+++.+++.+.   .|. . |.+++..+.-.+++++..++++++.++++|||+++.-....+..
T Consensus       275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~~  340 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPPW  340 (380)
T ss_pred             CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCCC
Confidence            8999999988653   433 4 99999999988999999999999999999999999988776654

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=90.68  E-value=0.35  Score=40.89  Aligned_cols=46  Identities=15%  Similarity=0.036  Sum_probs=40.6

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .-+++++...|++|.++||+.+    |++...+++.|..|...|++....
T Consensus        25 ~~Vl~~L~~~g~~tdeeLA~~L----gi~~~~VRk~L~~L~e~gLv~~~r   70 (178)
T PRK06266         25 FEVLKALIKKGEVTDEEIAEQT----GIKLNTVRKILYKLYDARLADYKR   70 (178)
T ss_pred             hHHHHHHHHcCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCeEEee
Confidence            3466777777999999999999    999999999999999999998543

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=90.62  E-value=0.38  Score=39.84  Aligned_cols=43  Identities=12%  Similarity=-0.035  Sum_probs=39.1

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      +++.++..+.+|-+|||+.+    |++...++++|..|...|++...
T Consensus        19 Vl~aL~~~~~~tdEeLa~~L----gi~~~~VRk~L~~L~e~~Lv~~~   61 (158)
T TIGR00373        19 VLFSLGIKGEFTDEEISLEL----GIKLNEVRKALYALYDAGLADYK   61 (158)
T ss_pred             HHHHHhccCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCceee
Confidence            56777778899999999999    99999999999999999999644

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators

Probab=90.56  E-value=0.54  Score=31.93  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=31.2

Q ss_pred             CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           20 LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        20 ~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .|..+||+.+    +++...+.+.|..|...|+++...
T Consensus        26 ~~~~~la~~~----~is~~~v~~~l~~L~~~G~i~~~~   59 (66)
T cd07377          26 PSERELAEEL----GVSRTTVREALRELEAEGLVERRP   59 (66)
T ss_pred             CCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecC
Confidence            3599999999    999999999999999999998664

This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=90.19  E-value=2  Score=40.59  Aligned_cols=108  Identities=11%  Similarity=0.014  Sum_probs=68.8

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC----Cce----------------------------------EEE
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF----ICE----------------------------------GIN  190 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~----~~~----------------------------------~~~  190 (309)
                      ..++..-. |.....++|==||+|+++++.+...++    +.+                                  .++
T Consensus       181 aAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G  259 (381)
T COG0116         181 AAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG  259 (381)
T ss_pred             HHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence            34444443 877789999999999999998887753    222                                  568


Q ss_pred             eec-hhHHhhCCCC-------CCceEEeCCCCCC-CC-C-Cceeeehhhhhc-CChhHHH-----HHHHHHHHhcCCCcE
Q 021707          191 FDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IP-A-ANAIFMKWVLAT-WTDDECK-----LIMENCYKALLAGGK  253 (309)
Q Consensus       191 ~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p-~-~D~i~~~~vlh~-~~d~~~~-----~iL~~~~~aL~pgG~  253 (309)
                      .|. +.+++.|+.+       +.|+|..+|+... -| + .|+|+++----. +.++..+     ++.+.+++.++--++
T Consensus       260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~  339 (381)
T COG0116         260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSR  339 (381)
T ss_pred             ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCce
Confidence            998 7788877653       7799999998754 22 2 388887632211 2222222     334444455554455


Q ss_pred             EEEe
Q 021707          254 LIAC  257 (309)
Q Consensus       254 l~i~  257 (309)
                      .++.
T Consensus       340 ~v~t  343 (381)
T COG0116         340 YVFT  343 (381)
T ss_pred             EEEE
Confidence            5554

>TIGR00122 birA_repr_reg BirA biotin operon repressor domain

Probab=90.04  E-value=0.61  Score=32.59  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=39.4

Q ss_pred             cCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707           15 LANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus        15 l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      +.+++.|..+||+.+    |++...+++-++.|.+.|+.....    +..|.+.+.
T Consensus         9 L~~~~~~~~eLa~~l----~vS~~tv~~~l~~L~~~g~~i~~~----~~g~~l~~~   56 (69)
T TIGR00122         9 LADNPFSGEKLGEAL----GMSRTAVNKHIQTLREWGVDVLTV----GKGYRLPPP   56 (69)
T ss_pred             HHcCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCeEEec----CCceEecCc
Confidence            457789999999999    999999999999999999965553    345666543

This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=89.96  E-value=0.74  Score=41.93  Aligned_cols=66  Identities=24%  Similarity=0.207  Sum_probs=53.4

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMF  214 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~  214 (309)
                      ...+++.+. .......+|.==|.|.++.++++.+|+..+.+++|. |.+++.+++.     +|++++.++|.
T Consensus        12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~   83 (314)
T COG0275          12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA   83 (314)
T ss_pred             HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence            456677775 556689999999999999999999998766999998 7888887652     68888887664

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=89.93  E-value=2.6  Score=41.36  Aligned_cols=126  Identities=21%  Similarity=0.242  Sum_probs=81.8

Q ss_pred             ChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcC--CCCCcceEEEecCCccHHHHHHHHhcC----CCceEEEeec-
Q 021707          121 PAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYN--GFKGVKRLVDVGGSAGDCLRMILQKHH----FICEGINFDL-  193 (309)
Q Consensus       121 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~~D~-  193 (309)
                      ..|+.++++|.--..|+++..       ..+.+..+  +-+....|+-+|+|.|-+..+.++.-.    .++ ..+++- 
T Consensus       333 ~TYetFEkD~VKY~~Yq~Ai~-------~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVk-lyavEKN  404 (649)
T KOG0822|consen  333 QTYETFEKDPVKYDQYQQAIL-------KALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVK-LYAVEKN  404 (649)
T ss_pred             hhhhhhhccchHHHHHHHHHH-------HHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceE-EEEEecC
Confidence            356677778877677776653       34444443  112256788999999998887776543    333 566664 


Q ss_pred             hhHHhhCCC------CCCceEEeCCCCCCC-C-C-CceeeehhhhhcCChhH-HHHHHHHHHHhcCCCcEEE
Q 021707          194 PEVVGEAPS------IPGVTHIGGDMFNSI-P-A-ANAIFMKWVLATWTDDE-CKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       194 p~~~~~a~~------~~ri~~~~~d~~~~~-p-~-~D~i~~~~vlh~~~d~~-~~~iL~~~~~aL~pgG~l~  255 (309)
                      |..+-..+.      ..||+++..||.+-. | + +|+++ +-.|-.|.|.| ..+.|--+-+-|+|+|.-+
T Consensus       405 PNAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~V-SELLGSFGDNELSPECLDG~q~fLkpdgIsI  475 (649)
T KOG0822|consen  405 PNAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIV-SELLGSFGDNELSPECLDGAQKFLKPDGISI  475 (649)
T ss_pred             cchhhhhhhhchhhhcCeeEEEeccccccCCchhhccchH-HHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence            554443332      288999999998753 3 2 47654 45566666543 5677888889999997443

>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family

Probab=89.61  E-value=0.81  Score=35.17  Aligned_cols=57  Identities=19%  Similarity=0.201  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccc--cCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFR--GERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~~t~~~~~l~~   76 (309)
                      .+++.|..+||+.+    ++++..+.++++.|+..|+|.+.....  ..-.+.+|+.+..+..
T Consensus        40 ~~~~~t~~eL~~~l----~~~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~lT~~G~~~~~   98 (109)
T TIGR01889        40 NEGKLTLKEIIKEI----LIKQSALVKIIKKLSKKGYLSKERSEDDERKVIISINKEQRSKIE   98 (109)
T ss_pred             cCCcCcHHHHHHHH----CCCHHHHHHHHHHHHHCCCEeccCCcccCCeEEEEECHHHHHHHH
Confidence            45789999999999    999999999999999999999765321  1224778887766554

This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=89.53  E-value=0.54  Score=37.03  Aligned_cols=49  Identities=16%  Similarity=0.251  Sum_probs=44.0

Q ss_pred             hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ++..-++++.-.+|..|..|++..+    |++-..+.+.++.|++.|-|...+
T Consensus        12 eLk~rIvElVRe~GRiTi~ql~~~T----GasR~Tvk~~lreLVa~G~l~~~G   60 (127)
T PF06163_consen   12 ELKARIVELVREHGRITIKQLVAKT----GASRNTVKRYLRELVARGDLYRHG   60 (127)
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHHH----CCCHHHHHHHHHHHHHcCCeEeCC
Confidence            4556677777788999999999999    999999999999999999999885

>PRK03573 transcriptional regulator SlyA; Provisional

Probab=89.48  E-value=0.84  Score=36.77  Aligned_cols=56  Identities=25%  Similarity=0.299  Sum_probs=45.5

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhcC
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~~   77 (309)
                      ++.|..|||+.+    ++++..+.++++-|+..|+|++...  |...-.+.+|+.|..+...
T Consensus        45 ~~~t~~eLa~~l----~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~  102 (144)
T PRK03573         45 PEQSQIQLAKAI----GIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISE  102 (144)
T ss_pred             CCCCHHHHHHHh----CCChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHHH
Confidence            468999999999    9999999999999999999998752  2112358899888766653

>COG1378 Predicted transcriptional regulators [Transcription]

Probab=89.09  E-value=0.76  Score=40.94  Aligned_cols=59  Identities=15%  Similarity=0.104  Sum_probs=48.3

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhh
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSL   74 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l   74 (309)
                      +.-.++.-|++|+.|||+.+    |+|...+..+|+.|...|++...++  .+-+|+.-+....+
T Consensus        21 vY~aLl~~g~~tA~eis~~s----gvP~~kvY~vl~sLe~kG~v~~~~g--~P~~y~av~p~~~i   79 (247)
T COG1378          21 VYLALLCLGEATAKEISEAS----GVPRPKVYDVLRSLEKKGLVEVIEG--RPKKYRAVPPEELI   79 (247)
T ss_pred             HHHHHHHhCCccHHHHHHHc----CCCchhHHHHHHHHHHCCCEEeeCC--CCceEEeCCHHHHH
Confidence            34445667999999999999    9999999999999999999998752  26688887755533

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=88.98  E-value=0.51  Score=35.97  Aligned_cols=45  Identities=11%  Similarity=0.128  Sum_probs=39.1

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      ..++..+..++++|..+||+.+    |+++..+.+.++.|...|++...
T Consensus         6 ~~il~~L~~~~~~~~~~la~~l----~~s~~tv~~~l~~L~~~g~i~~~   50 (108)
T smart00344        6 RKILEELQKDARISLAELAKKV----GLSPSTVHNRVKRLEEEGVIKGY   50 (108)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeece
Confidence            3455556567899999999999    99999999999999999999854

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea

Probab=88.97  E-value=0.69  Score=32.29  Aligned_cols=53  Identities=21%  Similarity=0.246  Sum_probs=40.5

Q ss_pred             CCCCCCHHHHHHHhCcCCC--CCcchHHHHHHHHHcCCceeeecccccCceEEcChhchh
Q 021707           16 ANTPLSVSQILTCILPSGG--GDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS   73 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g--~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~   73 (309)
                      .++|++..+|++.+ ...|  +++..++|-|++|...|++.+.+    ...+.+|+.+..
T Consensus        10 ~~~P~g~~~l~~~L-~~~g~~~se~avRrrLr~me~~Glt~~~g----~~G~~iT~~G~~   64 (66)
T PF08461_consen   10 SDKPLGRKQLAEEL-KLRGEELSEEAVRRRLRAMERDGLTRKVG----RQGRIITEKGLD   64 (66)
T ss_pred             cCCCCCHHHHHHHH-HhcChhhhHHHHHHHHHHHHHCCCccccC----CcccccCHHHHh
Confidence            46899999999998 2223  34589999999999999888664    445678877643

>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=88.95  E-value=0.51  Score=27.94  Aligned_cols=31  Identities=26%  Similarity=0.448  Sum_probs=26.1

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCce
Q 021707           19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVF   53 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll   53 (309)
                      |+|-.|||..+    |+...-+.|.|.-|...|++
T Consensus         2 ~mtr~diA~~l----G~t~ETVSR~l~~l~~~glI   32 (32)
T PF00325_consen    2 PMTRQDIADYL----GLTRETVSRILKKLERQGLI   32 (32)
T ss_dssp             E--HHHHHHHH----TS-HHHHHHHHHHHHHTTSE
T ss_pred             CcCHHHHHHHh----CCcHHHHHHHHHHHHHcCCC
Confidence            47889999999    99999999999999999875

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=88.85  E-value=4.6  Score=37.66  Aligned_cols=103  Identities=17%  Similarity=0.068  Sum_probs=72.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeC-CCCCC-CCC--Cceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGG-DMFNS-IPA--ANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~-d~~~~-~p~--~D~i~~~  226 (309)
                      ...+..|+|==||||.++++..--  +++ +++.|. ..++..++.+      ..+.+..+ |+... +++  .|.|.+=
T Consensus       195 v~~G~~vlDPFcGTGgiLiEagl~--G~~-viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatD  271 (347)
T COG1041         195 VKRGELVLDPFCGTGGILIEAGLM--GAR-VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATD  271 (347)
T ss_pred             cccCCEeecCcCCccHHHHhhhhc--Cce-EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEec
Confidence            445679999999999999987744  677 999999 5688888765      34444444 77653 655  4777641


Q ss_pred             ------hhhhcCC-hhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          227 ------WVLATWT-DDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       227 ------~vlh~~~-d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                            ....--. ++-..++|..+.++|++||++++.-+..+.
T Consensus       272 PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~~  315 (347)
T COG1041         272 PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDPR  315 (347)
T ss_pred             CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcch
Confidence                  1111111 344678999999999999999988774333

>PRK10870 transcriptional repressor MprA; Provisional

Probab=88.69  E-value=0.93  Score=38.14  Aligned_cols=57  Identities=21%  Similarity=0.264  Sum_probs=46.5

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhcC
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~~   77 (309)
                      ++++|..|||+.+    +++...+.+++.-|...|+|++....  ...-.+.+|+.|..+...
T Consensus        69 ~~~it~~eLa~~l----~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~~  127 (176)
T PRK10870         69 NHSIQPSELSCAL----GSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLRE  127 (176)
T ss_pred             CCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHH
Confidence            4678999999999    99999999999999999999986521  112358899988776654

>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A

Probab=88.56  E-value=0.91  Score=32.06  Aligned_cols=44  Identities=25%  Similarity=0.380  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      -+.|.++||..+    |++...+.+.|+.|...|+++...     +.+.+...
T Consensus        27 ~~lt~~~iA~~~----g~sr~tv~r~l~~l~~~g~I~~~~-----~~i~I~d~   70 (76)
T PF13545_consen   27 LPLTQEEIADML----GVSRETVSRILKRLKDEGIIEVKR-----GKIIILDP   70 (76)
T ss_dssp             EESSHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEET-----TEEEESSH
T ss_pred             ecCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEcC-----CEEEECCH
Confidence            378999999999    999999999999999999999874     56766543

...

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=88.46  E-value=0.92  Score=29.99  Aligned_cols=39  Identities=15%  Similarity=0.361  Sum_probs=31.9

Q ss_pred             hhhhhc-CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCc
Q 021707           10 RKKVRL-ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGV   52 (309)
Q Consensus        10 ~~~~~l-~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gl   52 (309)
                      ++..++ .+++.|.++||+.+    +++.+.+++-+..|...|+
T Consensus         5 il~~L~~~~~~it~~eLa~~l----~vS~rTi~~~i~~L~~~~~   44 (55)
T PF08279_consen    5 ILKLLLESKEPITAKELAEEL----GVSRRTIRRDIKELREWGI   44 (55)
T ss_dssp             HHHHHHHTTTSBEHHHHHHHC----TS-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHcCCCcCHHHHHHHh----CCCHHHHHHHHHHHHHCCC
Confidence            344453 45679999999999    9999999999999999993

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.32  E-value=3.2  Score=38.01  Aligned_cols=104  Identities=18%  Similarity=0.234  Sum_probs=76.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHhc--CCCceEEEeechhHHhhCC----CC------------------------CCceE
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKH--HFICEGINFDLPEVVGEAP----SI------------------------PGVTH  208 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~~D~p~~~~~a~----~~------------------------~ri~~  208 (309)
                      .+...|+-+|||.-.....++..+  +.++ .+=+|.|.+++..-    +.                        ++...
T Consensus        86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~-fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~  164 (335)
T KOG2918|consen   86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVK-FIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL  164 (335)
T ss_pred             CCceEEEEcCCCccchhhhhhccCCCCcce-EEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence            456789999999999999999998  7778 89999988776432    10                        35566


Q ss_pred             EeCCCCCC------CCC----C---ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          209 IGGDMFNS------IPA----A---NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       209 ~~~d~~~~------~p~----~---D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +..|..+.      +..    .   -+++.=-+|-+.+++++..+++.+.+... .+.+++.|.+.+.+
T Consensus       165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D  232 (335)
T KOG2918|consen  165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPND  232 (335)
T ss_pred             eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCC
Confidence            66666522      111    1   12334467788899999999999988765 66799999999766

>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species

Probab=87.92  E-value=0.97  Score=36.57  Aligned_cols=46  Identities=11%  Similarity=0.252  Sum_probs=39.8

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCc--eEEcC
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGER--KYSLT   68 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~--~y~~t   68 (309)
                      .+|+.|++|||-+.    |++.+.+.--|..+++-|-+.+..+   +|  +|.++
T Consensus         3 q~Ga~T~eELA~~F----GvttRkvaStLa~~ta~Grl~Rv~q---~gkfRy~iP   50 (155)
T PF07789_consen    3 QEGAKTAEELAGKF----GVTTRKVASTLAMVTATGRLIRVNQ---NGKFRYCIP   50 (155)
T ss_pred             ccCcccHHHHHHHh----CcchhhhHHHHHHHHhcceeEEecC---CCceEEeCC
Confidence            36899999999999    9999999999999999999988764   44  46664

The region in question is approximately 150 amino acid residues long.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=87.22  E-value=2.8  Score=37.07  Aligned_cols=87  Identities=15%  Similarity=0.108  Sum_probs=50.4

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCCCCC-----Cceeeehhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNSIPA-----ANAIFMKWVL  229 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~~p~-----~D~i~~~~vl  229 (309)
                      +.+|+=|| -.-..+++++-.++..+ ++++|+ +.+++..++     .-+|+.+..|+..++|+     +|++++--. 
T Consensus        45 gk~il~lG-DDDLtSlA~al~~~~~~-I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP-  121 (243)
T PF01861_consen   45 GKRILFLG-DDDLTSLALALTGLPKR-ITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP-  121 (243)
T ss_dssp             T-EEEEES--TT-HHHHHHHHT--SE-EEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred             CCEEEEEc-CCcHHHHHHHhhCCCCe-EEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence            57899998 44556666666677777 999999 445554432     23499999999999875     399887532 


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCc
Q 021707          230 ATWTDDECKLIMENCYKALLAGG  252 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG  252 (309)
                        ++.+-..-.|.+..++|+..|
T Consensus       122 --yT~~G~~LFlsRgi~~Lk~~g  142 (243)
T PF01861_consen  122 --YTPEGLKLFLSRGIEALKGEG  142 (243)
T ss_dssp             --SSHHHHHHHHHHHHHTB-STT
T ss_pred             --CCHHHHHHHHHHHHHHhCCCC
Confidence              344667788999999998544

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=86.98  E-value=2  Score=37.69  Aligned_cols=95  Identities=23%  Similarity=0.341  Sum_probs=64.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCC-Cc----e---EEEeechhHHhhCCCCCCceEEeCCCCCC---------CCC-
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHF-IC----E---GINFDLPEVVGEAPSIPGVTHIGGDMFNS---------IPA-  219 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~----~---~~~~D~p~~~~~a~~~~ri~~~~~d~~~~---------~p~-  219 (309)
                      +.+..++||+..-.|.++.-+.++.-+ +.    +   ++.+|+..|..    .+.|..+.+|+.+.         +.. 
T Consensus        39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP----I~GV~qlq~DIT~~stae~Ii~hfgge  114 (294)
T KOG1099|consen   39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP----IEGVIQLQGDITSASTAEAIIEHFGGE  114 (294)
T ss_pred             HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc----cCceEEeecccCCHhHHHHHHHHhCCC
Confidence            456689999999999999888876422 11    1   78888865532    46778888898764         222 


Q ss_pred             -Cceeeeh-----hhhhcCChhHHHHH----HHHHHHhcCCCcEEEE
Q 021707          220 -ANAIFMK-----WVLATWTDDECKLI----MENCYKALLAGGKLIA  256 (309)
Q Consensus       220 -~D~i~~~-----~vlh~~~d~~~~~i----L~~~~~aL~pgG~l~i  256 (309)
                       +|+|++-     .-+|++++=-..++    |+-...+|+|||.++.
T Consensus       115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa  161 (294)
T KOG1099|consen  115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA  161 (294)
T ss_pred             CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence             5999973     45787765322333    3444677899998763

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=86.95  E-value=1  Score=32.51  Aligned_cols=42  Identities=14%  Similarity=0.164  Sum_probs=37.4

Q ss_pred             hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +.+-.+|.+++.+||..+    +.+++.++-+|..++..|-+++..
T Consensus         9 d~l~~~gr~s~~~Ls~~~----~~p~~~VeaMLe~l~~kGkverv~   50 (78)
T PRK15431          9 DLLALRGRMEAAQISQTL----NTPQPMINAMLQQLESMGKAVRIQ   50 (78)
T ss_pred             HHHHHcCcccHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEeec
Confidence            334457899999999999    999999999999999999999874

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional

Probab=86.94  E-value=1.1  Score=43.95  Aligned_cols=67  Identities=18%  Similarity=0.149  Sum_probs=53.4

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCC
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEG   80 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~   80 (309)
                      ..+...+-..++.|..+||+.+    ++++..+.++++.|.+.|+|+....  ....|.+|+.|+.++....|
T Consensus         9 ~~vL~~L~~~~~~s~~eLA~~l----~l~~~tVt~~i~~Le~kGlV~~~~~--~~~~i~LTeeG~~~~~~g~p   75 (489)
T PRK04172          9 KKVLKALKELKEATLEELAEKL----GLPPEAVMRAAEWLEEKGLVKVEER--VEEVYVLTEEGKKYAEEGLP   75 (489)
T ss_pred             HHHHHHHHhCCCCCHHHHHHHh----CcCHHHHHHHHHHHHhCCCEEEEee--eEEEEEECHHHHHHHHhcCH
Confidence            3444444456789999999999    9999999999999999999997641  13579999999877765443

>COG1497 Predicted transcriptional regulator [Transcription]

Probab=86.85  E-value=1.1  Score=39.30  Aligned_cols=59  Identities=12%  Similarity=0.258  Sum_probs=49.7

Q ss_pred             hhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcC
Q 021707           11 KKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        11 ~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~   77 (309)
                      ++.....+.....|||..+    |+.+..+..-++-|+..|++++.+    .+.|..|..+..++..
T Consensus        17 ~ei~~~qp~v~q~eIA~~l----giT~QaVsehiK~Lv~eG~i~~~g----R~~Y~iTkkG~e~l~~   75 (260)
T COG1497          17 SEIAVRQPRVKQKEIAKKL----GITLQAVSEHIKELVKEGLIEKEG----RGEYEITKKGAEWLLE   75 (260)
T ss_pred             HHHHHhCCCCCHHHHHHHc----CCCHHHHHHHHHHHHhccceeecC----CeeEEEehhHHHHHHH
Confidence            3444445678999999999    999999999999999999999975    6799999999665543

>PHA02943 hypothetical protein; Provisional

Probab=86.85  E-value=1.3  Score=36.19  Aligned_cols=43  Identities=16%  Similarity=0.110  Sum_probs=38.4

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +.+.+ +.|..|..|||+.+    |++-..++..|..|...|.|.+..
T Consensus        16 ILE~L-k~G~~TtseIAkaL----GlS~~qa~~~LyvLErEG~VkrV~   58 (165)
T PHA02943         16 TLRLL-ADGCKTTSRIANKL----GVSHSMARNALYQLAKEGMVLKVE   58 (165)
T ss_pred             HHHHH-hcCCccHHHHHHHH----CCCHHHHHHHHHHHHHcCceEEEe
Confidence            34444 78999999999999    999999999999999999999876

>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria

Probab=86.85  E-value=0.94  Score=31.53  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             CCCHHHHHHHhCcCCCCC-cchHHHHHHHHHcCCceeeec
Q 021707           19 PLSVSQILTCILPSGGGD-AENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~-~~~l~rlL~~L~~~gll~~~~   57 (309)
                      |-|+.|||+.+    |++ +..+.+.|++|...|++....
T Consensus        25 ~Pt~rEIa~~~----g~~S~~tv~~~L~~Le~kG~I~r~~   60 (65)
T PF01726_consen   25 PPTVREIAEAL----GLKSTSTVQRHLKALERKGYIRRDP   60 (65)
T ss_dssp             ---HHHHHHHH----TSSSHHHHHHHHHHHHHTTSEEEGC
T ss_pred             CCCHHHHHHHh----CCCChHHHHHHHHHHHHCcCccCCC
Confidence            77999999999    998 899999999999999999874

The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=86.48  E-value=2.9  Score=40.60  Aligned_cols=102  Identities=18%  Similarity=0.251  Sum_probs=72.9

Q ss_pred             eEEEecCCccHHHHHHHHhcCCCceEEEeechhH-HhhC-----CCCCCceEEeCCCCCC-CCC--CceeeehhhhhcCC
Q 021707          163 RLVDVGGSAGDCLRMILQKHHFICEGINFDLPEV-VGEA-----PSIPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWT  233 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~-~~~a-----~~~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~  233 (309)
                      +++-+|||.-.+...+-+.. .-. ++.+|.+++ ++..     ++.+-..+...|+... ++.  .|+++....++.+-
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G-~~d-I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~  128 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG-FED-ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF  128 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC-CCC-ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence            89999999998887766543 123 778888543 3322     3346788999999876 664  49999999998753


Q ss_pred             -hh-------HHHHHHHHHHHhcCCCcEEEEeccc--cCCCCC
Q 021707          234 -DD-------ECKLIMENCYKALLAGGKLIACEPV--LLDDSN  266 (309)
Q Consensus       234 -d~-------~~~~iL~~~~~aL~pgG~l~i~e~~--~~~~~~  266 (309)
                       ++       .+-..+..+.+.|+|||+.+.+-..  .|..++
T Consensus       129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~r~  171 (482)
T KOG2352|consen  129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQGRK  171 (482)
T ss_pred             CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCCCC
Confidence             22       3445689999999999999988774  555443

>PF14394 DUF4423: Domain of unknown function (DUF4423)

Probab=86.30  E-value=1.4  Score=36.86  Aligned_cols=49  Identities=20%  Similarity=0.226  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhch
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGK   72 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~   72 (309)
                      +..+.++||+++.|  ++++..++.-|+.|..+|++++++    +|.|..|..+-
T Consensus        38 ~~~d~~~iak~l~p--~is~~ev~~sL~~L~~~gli~k~~----~g~y~~t~~~l   86 (171)
T PF14394_consen   38 FAPDPEWIAKRLRP--KISAEEVRDSLEFLEKLGLIKKDG----DGKYVQTDKSL   86 (171)
T ss_pred             CCCCHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCeEECC----CCcEEEeccee
Confidence            34499999999966  899999999999999999999997    78999997553

>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators

Probab=86.17  E-value=1.7  Score=33.56  Aligned_cols=61  Identities=21%  Similarity=0.230  Sum_probs=42.8

Q ss_pred             hhhhhhhcC-CCCCCHHHHHHHhCcCC-CCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707            8 DGRKKVRLA-NTPLSVSQILTCILPSG-GGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT   68 (309)
Q Consensus         8 ~g~~~~~l~-~~~~t~~eLA~~~~~~~-g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t   68 (309)
                      ..+++.+.. +++.|++||.+.+.... +++...+.|.|+.|+..|++.+...+.+...|.++
T Consensus         4 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y~~~   66 (116)
T cd07153           4 LAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYELN   66 (116)
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCceEEEeC
Confidence            445665554 57899999999982211 46778999999999999999987532112356554

Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=85.80  E-value=0.39  Score=37.05  Aligned_cols=37  Identities=30%  Similarity=0.587  Sum_probs=28.6

Q ss_pred             ceeeeh----hhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          221 NAIFMK----WVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       221 D~i~~~----~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      |+|++.    |+=-+|.|+-..++++++++.|+|||.+++-
T Consensus         3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE   43 (110)
T PF06859_consen    3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE   43 (110)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence            666653    3333678999999999999999999976654

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length

Probab=85.48  E-value=1.7  Score=32.40  Aligned_cols=54  Identities=33%  Similarity=0.457  Sum_probs=41.3

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHH----------HHHcCCce-eeecccccCceEEcChhchhhh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILR----------LLTSYGVF-SEHREFRGERKYSLTEIGKSLV   75 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~----------~L~~~gll-~~~~~~~~~~~y~~t~~~~~l~   75 (309)
                      ..+.+..|||..+    +.++..+..-|+          .|+.+|+| .+.... +.-.|++|+.+..++
T Consensus        23 p~~~~~~eIar~v----~~~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~-g~k~Y~lT~~G~~~~   87 (90)
T PF07381_consen   23 PEPAYPSEIARSV----GSDYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKG-GFKYYRLTEKGKRIA   87 (90)
T ss_pred             CCcCCHHHHHHHH----CCCHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecC-CeeEEEeChhhhhHH
Confidence            4688999999999    999988888885          58999999 333211 234799999886554

The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=85.48  E-value=3.4  Score=40.78  Aligned_cols=94  Identities=14%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             CcceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCC-----------------------
Q 021707          160 GVKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMF-----------------------  214 (309)
Q Consensus       160 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~-----------------------  214 (309)
                      .+.+|+-+|+| .|..++..++.. +.+ ++++|. ++..+.+++. ..+++..|..                       
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~-V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSL-GAI-VRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            46899999998 677888888776 457 999998 6677776654 2222211110                       


Q ss_pred             --CC-CCCCceeeehhhhhcCChhHHHHH-HHHHHHhcCCCcEEEEecc
Q 021707          215 --NS-IPAANAIFMKWVLATWTDDECKLI-MENCYKALLAGGKLIACEP  259 (309)
Q Consensus       215 --~~-~p~~D~i~~~~vlh~~~d~~~~~i-L~~~~~aL~pgG~l~i~e~  259 (309)
                        .. ...+|+++..--.   +...+..+ .++..+.|+|||+++.+-.
T Consensus       241 ~~~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        241 LFAEQAKEVDIIITTALI---PGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHhccCCCCEEEECCCC---CcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence              00 1235888765432   33223345 5999999999999887643

>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication

Probab=85.42  E-value=1.3  Score=37.03  Aligned_cols=44  Identities=11%  Similarity=0.166  Sum_probs=40.3

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707           19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      -+|..+||+.+    |++...+.|.+..|...+++.+..    .|.|.++|.
T Consensus        75 ~~t~~~ia~~l----~iS~~Tv~r~ik~L~e~~iI~k~~----~G~Y~iNP~  118 (165)
T PF05732_consen   75 VATQKEIAEKL----GISKPTVSRAIKELEEKNIIKKIR----NGAYMINPN  118 (165)
T ss_pred             EeeHHHHHHHh----CCCHHHHHHHHHHHHhCCcEEEcc----CCeEEECcH
Confidence            35899999999    999999999999999999999886    789999984

; GO: 0006260 DNA replication, 0006276 plasmid maintenance

>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2

Probab=85.08  E-value=0.82  Score=31.49  Aligned_cols=44  Identities=16%  Similarity=0.174  Sum_probs=36.3

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      .+++.++..|+.|..+|.+.+    +++++.++.-|-.|...+++...
T Consensus        17 ~V~~~Ll~~G~ltl~~i~~~t----~l~~~~Vk~~L~~LiQh~~v~y~   60 (62)
T PF08221_consen   17 KVGEVLLSRGRLTLREIVRRT----GLSPKQVKKALVVLIQHNLVQYF   60 (62)
T ss_dssp             HHHHHHHHC-SEEHHHHHHHH----T--HHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHcCCcCHHHHHHHh----CCCHHHHHHHHHHHHHcCCeeee
Confidence            356667788999999999999    99999999999999999998754

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.

>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors

Probab=84.52  E-value=0.53  Score=35.94  Aligned_cols=44  Identities=20%  Similarity=0.187  Sum_probs=33.5

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +++.++.++.++-++||+.+    |+++..++++|..|...|++....
T Consensus        18 Il~~L~~~~~l~de~la~~~----~l~~~~vRkiL~~L~~~~lv~~~~   61 (105)
T PF02002_consen   18 ILDALLRKGELTDEDLAKKL----GLKPKEVRKILYKLYEDGLVSYRR   61 (105)
T ss_dssp             HHHHHHHH--B-HHHHHHTT-----S-HHHHHHHHHHHHHHSS-EEEE
T ss_pred             HHHHHHHcCCcCHHHHHHHh----CCCHHHHHHHHHHHHHCCCeEEEE
Confidence            46666667899999999999    999999999999999999997664

Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=84.23  E-value=1.7  Score=35.48  Aligned_cols=95  Identities=19%  Similarity=0.213  Sum_probs=46.8

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-----hhHHhhCCCCCCceEEeCCCCCCCCC-----Cceeeehhhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-----PEVVGEAPSIPGVTHIGGDMFNSIPA-----ANAIFMKWVLA  230 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-----p~~~~~a~~~~ri~~~~~d~~~~~p~-----~D~i~~~~vlh  230 (309)
                      ..-|+|+|=|.|..=--+.+.+|+-+ +.++|.     |+.+.     +.=.++-||+.+..|.     ..+.+...=+-
T Consensus        29 ~G~VlElGLGNGRTydHLRe~~p~R~-I~vfDR~l~~hp~~~P-----~~~~~ilGdi~~tl~~~~~~g~~a~laHaD~G  102 (160)
T PF12692_consen   29 PGPVLELGLGNGRTYDHLREIFPDRR-IYVFDRALACHPSSTP-----PEEDLILGDIRETLPALARFGAGAALAHADIG  102 (160)
T ss_dssp             -S-EEEE--TTSHHHHHHHHH--SS--EEEEESS--S-GGG--------GGGEEES-HHHHHHHHHHH-S-EEEEEE---
T ss_pred             CCceEEeccCCCccHHHHHHhCCCCe-EEEEeeecccCCCCCC-----chHheeeccHHHHhHHHHhcCCceEEEEeecC
Confidence            36899999999999999999999999 999998     33322     2235566666543221     12222222221


Q ss_pred             cCChhHHHHHH----HHHHHhcCCCcEEEEecccc
Q 021707          231 TWTDDECKLIM----ENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       231 ~~~d~~~~~iL----~~~~~aL~pgG~l~i~e~~~  261 (309)
                      .-..++.....    --+...|.|||.++-..++.
T Consensus       103 ~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~  137 (160)
T PF12692_consen  103 TGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY  137 (160)
T ss_dssp             -S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred             CCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence            11222222223    33456678999777665554

>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed

Probab=84.22  E-value=1.6  Score=41.98  Aligned_cols=46  Identities=17%  Similarity=0.205  Sum_probs=39.3

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      .+.|.|.+||++.+    +++++.++++|+.|...|++.+.+    ++.|.+..
T Consensus       307 ~g~~~t~~~La~~l----~~~~~~v~~iL~~L~~agLI~~~~----~g~~~l~r  352 (412)
T PRK04214        307 HGKALDVDEIRRLE----PMGYDELGELLCELARIGLLRRGE----RGQWVLAR  352 (412)
T ss_pred             cCCCCCHHHHHHHh----CCCHHHHHHHHHHHHhCCCeEecC----CCceEecC
Confidence            35689999999999    999999999999999999998764    45676553

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=83.93  E-value=8.8  Score=36.18  Aligned_cols=99  Identities=18%  Similarity=0.072  Sum_probs=61.7

Q ss_pred             CCCcceEEEecCCc-cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeC---C-CCCC----CCC--Cceeee
Q 021707          158 FKGVKRLVDVGGSA-GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGG---D-MFNS----IPA--ANAIFM  225 (309)
Q Consensus       158 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~---d-~~~~----~p~--~D~i~~  225 (309)
                      .....+|+.+|+|. |..+..+++...-.+ +++++. ++..+.+++...+.++..   + +.+.    .+.  .|+++-
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~-vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld  260 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAER-VIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCID  260 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCE-EEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence            55668899999987 889999999886445 778776 556665554322233221   1 1111    121  366653


Q ss_pred             h---------------hhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          226 K---------------WVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       226 ~---------------~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      .               ++|+..++.  ...+.++.+.|+|+|++++...
T Consensus       261 ~vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         261 AVGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence            2               222322333  4678889999999999999854

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=83.63  E-value=6.2  Score=32.86  Aligned_cols=95  Identities=13%  Similarity=0.050  Sum_probs=58.8

Q ss_pred             EecCCccHHHHHHHHhcC---CCceEEEeechhHHh-hCCC---------CCCceEEe-CCCCCC---C--CC--Cceee
Q 021707          166 DVGGSAGDCLRMILQKHH---FICEGINFDLPEVVG-EAPS---------IPGVTHIG-GDMFNS---I--PA--ANAIF  224 (309)
Q Consensus       166 DvG~G~G~~~~~l~~~~p---~~~~~~~~D~p~~~~-~a~~---------~~ri~~~~-~d~~~~---~--p~--~D~i~  224 (309)
                      =||=|.-.|+.+|++++.   ++. ++.+|-.+.+. .-..         ..+++++. .|..+.   .  ..  .|.|+
T Consensus         2 lvGeGdfSFs~sL~~~~~~~~~l~-ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIi   80 (166)
T PF10354_consen    2 LVGEGDFSFSLSLARAFGSATNLV-ATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRII   80 (166)
T ss_pred             eeeccchHHHHHHHHHcCCCCeEE-EeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEE
Confidence            378888999999999987   344 78888743332 2221         23444443 355432   2  12  48888


Q ss_pred             ehhhhhcCC-----------hhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          225 MKWVLATWT-----------DDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       225 ~~~vlh~~~-----------d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      .++--.-..           ..-....++.+.+.|+++|.|.|.=.--
T Consensus        81 FNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~  128 (166)
T PF10354_consen   81 FNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG  128 (166)
T ss_pred             EeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            776543211           1224567888899999999999875443

>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function

Probab=83.38  E-value=2.7  Score=31.39  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=35.5

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .-+|-.+.-+|..+    +++...+...++-|..+|++++..
T Consensus        18 ~~~~Dy~k~ia~~l----~~~~~~v~~~l~~Le~~GLler~~   55 (92)
T PF10007_consen   18 KAGPDYAKSIARRL----KIPLEEVREALEKLEEMGLLERVE   55 (92)
T ss_pred             HHCCCcHHHHHHHH----CCCHHHHHHHHHHHHHCCCeEEec
Confidence            45888999999999    999999999999999999999986

>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities

Probab=83.33  E-value=2.1  Score=29.36  Aligned_cols=36  Identities=19%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             CCC-CHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           18 TPL-SVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        18 ~~~-t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ..+ |..+||+..    |++...+++.|+.|.+.|+++...
T Consensus        22 ~~lps~~~la~~~----~vsr~tvr~al~~L~~~g~i~~~~   58 (64)
T PF00392_consen   22 DRLPSERELAERY----GVSRTTVREALRRLEAEGLIERRP   58 (64)
T ss_dssp             SBE--HHHHHHHH----TS-HHHHHHHHHHHHHTTSEEEET
T ss_pred             CEeCCHHHHHHHh----ccCCcHHHHHHHHHHHCCcEEEEC
Confidence            467 999999999    999999999999999999998875

The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....

>PRK13509 transcriptional repressor UlaR; Provisional

Probab=83.04  E-value=1.9  Score=38.41  Aligned_cols=46  Identities=11%  Similarity=0.077  Sum_probs=40.3

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .-+.+.+..++..++.|||+.+    |+++.-++|-|+.|...|++.+..
T Consensus         8 ~~Il~~l~~~~~~~~~ela~~l----~vS~~TirRdL~~Le~~g~i~r~~   53 (251)
T PRK13509          8 QILLELLAQLGFVTVEKVIERL----GISPATARRDINKLDESGKLKKVR   53 (251)
T ss_pred             HHHHHHHHHcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEec
Confidence            3355556667899999999999    999999999999999999998875

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=82.95  E-value=4.8  Score=35.66  Aligned_cols=103  Identities=16%  Similarity=0.207  Sum_probs=69.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-----hhHHhhCCCCCCceEEeCCCCCCCC-----C-Cceeee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-----PEVVGEAPSIPGVTHIGGDMFNSIP-----A-ANAIFM  225 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-----p~~~~~a~~~~ri~~~~~d~~~~~p-----~-~D~i~~  225 (309)
                      .+...+||-+|.++|+....+... .|+-- +..++.     -..+..|++..+|--+..|...+..     . .|+||.
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~-VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa  232 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGC-VYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA  232 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCce-EEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence            356789999999999987776654 35545 566666     3678888888999888889987733     1 277664


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      --.    +++++.-+.-++.--|++||.++|.=-...-++
T Consensus       233 Dva----qpdq~RivaLNA~~FLk~gGhfvisikancids  268 (317)
T KOG1596|consen  233 DVA----QPDQARIVALNAQYFLKNGGHFVISIKANCIDS  268 (317)
T ss_pred             cCC----CchhhhhhhhhhhhhhccCCeEEEEEecccccc
Confidence            322    223344445567778899998887644433333

>COG1733 Predicted transcriptional regulators [Transcription]

Probab=82.49  E-value=2.8  Score=33.01  Aligned_cols=57  Identities=23%  Similarity=0.272  Sum_probs=46.3

Q ss_pred             CCCCCCHHHHHHHhCcCCC-CCcchHHHHHHHHHcCCceeeeccc-c-cCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGG-GDAENLQCILRLLTSYGVFSEHREF-R-GERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g-~~~~~l~rlL~~L~~~gll~~~~~~-~-~~~~y~~t~~~~~l~~   76 (309)
                      .+|+.-..||-..+    + +++.-|.+-|+.|...|++.+..-. + ..-.|++|+.+..|..
T Consensus        33 ~~g~~RF~eL~r~i----~~Is~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~~   92 (120)
T COG1733          33 FDGPKRFNELRRSI----GGISPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLLP   92 (120)
T ss_pred             hcCCCcHHHHHHHc----cccCHHHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHHHHHH
Confidence            35999999999999    5 9999999999999999999987521 1 0236999998876654

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=82.39  E-value=1.6  Score=39.09  Aligned_cols=72  Identities=13%  Similarity=0.134  Sum_probs=42.2

Q ss_pred             HHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCc
Q 021707          174 CLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGG  252 (309)
Q Consensus       174 ~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG  252 (309)
                      ++.+|.++.++.+ +++.|. +..+..+.+..-+.-...+ .+....+|+|++.-     |.....++|+++...+++|.
T Consensus         1 ~A~aL~~~g~~~~-v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~~~~   73 (258)
T PF02153_consen    1 IALALRKAGPDVE-VYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLKPGA   73 (258)
T ss_dssp             HHHHHHHTTTTSE-EEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS-TTS
T ss_pred             ChHHHHhCCCCeE-EEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcCCCc
Confidence            4678889999999 999998 5666666444333333322 12244568888765     33445566666666555554

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=82.23  E-value=1.7  Score=38.77  Aligned_cols=99  Identities=21%  Similarity=0.161  Sum_probs=55.9

Q ss_pred             cceEEEecCCccHHHHH---HHHhc--CCCceEEEeec----hhHHhh---------------------------CCC--
Q 021707          161 VKRLVDVGGSAGDCLRM---ILQKH--HFICEGINFDL----PEVVGE---------------------------APS--  202 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~---l~~~~--p~~~~~~~~D~----p~~~~~---------------------------a~~--  202 (309)
                      +.-|+++|+-.|..++.   +++.+  ++-+ +.++|.    |+.-..                           ..+  
T Consensus        75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~-i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRR-IYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHCTTTTS---EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCE-EEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            57899999988876654   44444  3445 899995    322110                           000  


Q ss_pred             --CCCceEEeCCCCCCCCCC--ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          203 --IPGVTHIGGDMFNSIPAA--NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       203 --~~ri~~~~~d~~~~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                        .++++++.|.+.+-+|..  +-|-+-++=-|+-+. ....|..++..|.|||.|++-|-..
T Consensus       154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-T~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-TKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-HHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             CCcccEEEECCcchhhhccCCCccEEEEEEeccchHH-HHHHHHHHHhhcCCCeEEEEeCCCC
Confidence              157999999985545542  222222222244444 3689999999999999888888666

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain

Probab=82.21  E-value=2.4  Score=41.35  Aligned_cols=65  Identities=15%  Similarity=0.162  Sum_probs=51.6

Q ss_pred             hhhhhcCCCC-CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCC
Q 021707           10 RKKVRLANTP-LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEG   80 (309)
Q Consensus        10 ~~~~~l~~~~-~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~   80 (309)
                      +.+.+...++ .+.++||+.+    |++...+.+.+..|.+.|+++.....  ...|.+|+.++..+.+.+|
T Consensus         8 iL~~l~~~~~~~~~~~la~~~----g~~~~~v~~~~~~L~~kg~v~~~~~~--~~~~~LT~eG~~~l~~G~P   73 (492)
T PLN02853          8 LLGALSNNEEISDSGQFAASH----GLDHNEVVGVIKSLHGFRYVDAQDIK--RETWVLTEEGKKYAAEGSP   73 (492)
T ss_pred             HHHHHHhcCCCCCHHHHHHHc----CCCHHHHHHHHHHHHhCCCEEEEEEE--EEEEEECHHHHHHHHcCCH
Confidence            3444434454 8999999999    99999999999999999999876522  4689999999877766554

>PRK10742 putative methyltransferase; Provisional

Probab=82.19  E-value=2.1  Score=38.08  Aligned_cols=109  Identities=13%  Similarity=0.121  Sum_probs=72.1

Q ss_pred             HHHHhhcCCCCCcc--eEEEecCCccHHHHHHHHhcCCCceEEEeechhHH--------hhCC------C--CCCceEEe
Q 021707          149 TSVLDSYNGFKGVK--RLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVV--------GEAP------S--IPGVTHIG  210 (309)
Q Consensus       149 ~~~~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~--------~~a~------~--~~ri~~~~  210 (309)
                      +.+++++. +.++.  +|||.=+|.|..+..++.+  +++ ++.+|...++        +.+.      .  ..|++++.
T Consensus        76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~-V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~  151 (250)
T PRK10742         76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_pred             cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence            45677774 55544  9999999999999999988  777 9999983322        2221      1  15788999


Q ss_pred             CCCCCC---CCC-Cceeee----------------hhhhhcC--ChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          211 GDMFNS---IPA-ANAIFM----------------KWVLATW--TDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       211 ~d~~~~---~p~-~D~i~~----------------~~vlh~~--~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +|..+.   .+. .|+|++                ..++|.+  .+.+..++|+.+.++-+  -++++-++...+
T Consensus       152 ~da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~--kRVVVKrp~~a~  224 (250)
T PRK10742        152 ASSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT--KRVVVKRPDYAP  224 (250)
T ss_pred             CcHHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC--ceEEEecCCCCC
Confidence            887653   233 488774                1223332  24456788888877755  678887765544

>TIGR00498 lexA SOS regulatory protein LexA

Probab=82.16  E-value=1.7  Score=37.08  Aligned_cols=36  Identities=19%  Similarity=0.256  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHHhCcCCCCC-cchHHHHHHHHHcCCceeeec
Q 021707           18 TPLSVSQILTCILPSGGGD-AENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~-~~~l~rlL~~L~~~gll~~~~   57 (309)
                      -+.|..|||+.+    |++ +..+.+.|+.|...|+++...
T Consensus        24 ~~~~~~ela~~~----~~~s~~tv~~~l~~L~~~g~i~~~~   60 (199)
T TIGR00498        24 YPPSIREIARAV----GLRSPSAAEEHLKALERKGYIERDP   60 (199)
T ss_pred             CCCcHHHHHHHh----CCCChHHHHHHHHHHHHCCCEecCC
Confidence            378999999999    999 899999999999999999884

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>PF13730 HTH_36: Helix-turn-helix domain

Probab=81.94  E-value=1.8  Score=28.59  Aligned_cols=29  Identities=17%  Similarity=0.253  Sum_probs=27.8

Q ss_pred             CHHHHHHHhCcCCCCCcchHHHHHHHHHcCCce
Q 021707           21 SVSQILTCILPSGGGDAENLQCILRLLTSYGVF   53 (309)
Q Consensus        21 t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll   53 (309)
                      |.+.||+.+    |++.+.+.+.+..|+..|++
T Consensus        27 S~~~la~~~----g~s~~Tv~~~i~~L~~~G~I   55 (55)
T PF13730_consen   27 SQETLAKDL----GVSRRTVQRAIKELEEKGLI   55 (55)
T ss_pred             CHHHHHHHH----CcCHHHHHHHHHHHHHCcCC
Confidence            899999999    99999999999999999985

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=81.79  E-value=3  Score=38.88  Aligned_cols=93  Identities=20%  Similarity=0.126  Sum_probs=63.6

Q ss_pred             CCCcceEEEecC-CccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCC---CCCCCCC-Cceeeehhhhhc
Q 021707          158 FKGVKRLVDVGG-SAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGD---MFNSIPA-ANAIFMKWVLAT  231 (309)
Q Consensus       158 ~~~~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d---~~~~~p~-~D~i~~~~vlh~  231 (309)
                      .....+|+=+|. |.|+++..+++..- .+ ++++|. ++-.+.+++...-.++...   ..+..++ +|+++-.-.   
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~-Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~---  238 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AE-VIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG---  238 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-Ce-EEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC---
Confidence            445667777765 57889999999775 88 999998 5567777776555666543   2222333 577665432   


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                            ...+....+.|+++|+++++-...
T Consensus       239 ------~~~~~~~l~~l~~~G~~v~vG~~~  262 (339)
T COG1064         239 ------PATLEPSLKALRRGGTLVLVGLPG  262 (339)
T ss_pred             ------hhhHHHHHHHHhcCCEEEEECCCC
Confidence                  134566777899999999997664

>PF13518 HTH_28: Helix-turn-helix domain

Probab=81.62  E-value=2.4  Score=27.34  Aligned_cols=38  Identities=16%  Similarity=0.133  Sum_probs=31.9

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCc
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGV   52 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gl   52 (309)
                      -++++.+ +|. |+.++|+..    |++...+.+|++.....|+
T Consensus         4 ~iv~~~~-~g~-s~~~~a~~~----gis~~tv~~w~~~y~~~G~   41 (52)
T PF13518_consen    4 QIVELYL-EGE-SVREIAREF----GISRSTVYRWIKRYREGGI   41 (52)
T ss_pred             HHHHHHH-cCC-CHHHHHHHH----CCCHhHHHHHHHHHHhcCH
Confidence            3556555 444 999999999    9999999999999998885

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=81.40  E-value=2.7  Score=38.24  Aligned_cols=106  Identities=17%  Similarity=0.168  Sum_probs=67.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC----CCC-Cceeee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS----IPA-ANAIFM  225 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~----~p~-~D~i~~  225 (309)
                      -..+.+|||..++.|.=+..+++...+-..+++.|. ++-+...++      ..++.....|..+.    .+. .|.|++
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv  162 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV  162 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence            455678999999999999999999874323899997 333333322      25677776665543    122 366663


Q ss_pred             ----h--hhhhcCCh--------------hHHHHHHHHHHHhc----CCCcEEEEeccccCC
Q 021707          226 ----K--WVLATWTD--------------DECKLIMENCYKAL----LAGGKLIACEPVLLD  263 (309)
Q Consensus       226 ----~--~vlh~~~d--------------~~~~~iL~~~~~aL----~pgG~l~i~e~~~~~  263 (309)
                          +  .++..-++              .--.++|+++.+.+    +|||+++-..-.+..
T Consensus       163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~  224 (283)
T PF01189_consen  163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSP  224 (283)
T ss_dssp             ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHG
T ss_pred             CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHH
Confidence                1  22221111              12468999999999    999988866544433

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=81.32  E-value=5.5  Score=34.69  Aligned_cols=100  Identities=13%  Similarity=0.158  Sum_probs=60.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC---------------------------------
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI---------------------------------  203 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~---------------------------------  203 (309)
                      ..+.++-|-.||.|.++.-+.-.+++ ++.+.+-|. +.+++.|+++                                 
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~  129 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE  129 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            45679999999999998877766654 444788887 5666655431                                 


Q ss_pred             ---------------CCceEEeCCCCCCC-------CCC-ceeeehh---hhhcCCh----hHHHHHHHHHHHhcCCCcE
Q 021707          204 ---------------PGVTHIGGDMFNSI-------PAA-NAIFMKW---VLATWTD----DECKLIMENCYKALLAGGK  253 (309)
Q Consensus       204 ---------------~ri~~~~~d~~~~~-------p~~-D~i~~~~---vlh~~~d----~~~~~iL~~~~~aL~pgG~  253 (309)
                                     ....+.+.|.|++.       +.+ |+|+.--   -+-+|..    +-+.++|.+++.+|.+++.
T Consensus       130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sV  209 (246)
T PF11599_consen  130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSV  209 (246)
T ss_dssp             HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-E
T ss_pred             HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcE
Confidence                           12567778998852       223 8877532   2234643    3478999999999966666


Q ss_pred             EEEec
Q 021707          254 LIACE  258 (309)
Q Consensus       254 l~i~e  258 (309)
                      +.+.+
T Consensus       210 V~v~~  214 (246)
T PF11599_consen  210 VAVSD  214 (246)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            66643

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional

Probab=81.11  E-value=2  Score=35.11  Aligned_cols=45  Identities=9%  Similarity=0.193  Sum_probs=39.3

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      ..+.+.+-.++..|..+||+.+    |+++..+.+=++-|...|++...
T Consensus        12 ~~Il~~Lq~d~R~s~~eiA~~l----glS~~tV~~Ri~rL~~~GvI~~~   56 (153)
T PRK11179         12 RGILEALMENARTPYAELAKQF----GVSPGTIHVRVEKMKQAGIITGT   56 (153)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeeeE
Confidence            3455556678999999999999    99999999999999999999854

>PRK11169 leucine-responsive transcriptional regulator; Provisional

Probab=80.46  E-value=2.6  Score=34.88  Aligned_cols=45  Identities=11%  Similarity=0.005  Sum_probs=39.4

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      .-+...+-.++.+|..|||+.+    |+++..+.+=++-|...|++...
T Consensus        17 ~~IL~~Lq~d~R~s~~eiA~~l----glS~~tv~~Ri~rL~~~GvI~~~   61 (164)
T PRK11169         17 RNILNELQKDGRISNVELSKRV----GLSPTPCLERVRRLERQGFIQGY   61 (164)
T ss_pred             HHHHHHhccCCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEE
Confidence            3455566678999999999999    99999999999999999999854

>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4

Probab=80.38  E-value=2.1  Score=30.80  Aligned_cols=37  Identities=16%  Similarity=0.299  Sum_probs=25.6

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHc
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTS   49 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~   49 (309)
                      -++.++...+|+|.++||..+    |++.+.++..|..+-.
T Consensus        28 ~LLr~LA~G~PVt~~~LA~a~----g~~~e~v~~~L~~~p~   64 (77)
T PF12324_consen   28 PLLRLLAKGQPVTVEQLAAAL----GWPVEEVRAALAAMPD   64 (77)
T ss_dssp             HHHHHHTTTS-B-HHHHHHHH----T--HHHHHHHHHH-TT
T ss_pred             HHHHHHHcCCCcCHHHHHHHH----CCCHHHHHHHHHhCCC
Confidence            355666667899999999999    9999888888887753

99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.

>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term

Probab=80.10  E-value=2.6  Score=32.88  Aligned_cols=36  Identities=8%  Similarity=0.155  Sum_probs=34.0

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .+.|++|||+.+    ..+++.++.+|+.|...|.++-.+
T Consensus        18 ~~vtl~elA~~l----~cS~Rn~r~lLkkm~~~gWi~W~p   53 (115)
T PF12793_consen   18 VEVTLDELAELL----FCSRRNARTLLKKMQEEGWITWQP   53 (115)
T ss_pred             cceeHHHHHHHh----CCCHHHHHHHHHHHHHCCCeeeeC
Confidence            478999999999    999999999999999999999876

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=80.05  E-value=7.1  Score=35.67  Aligned_cols=89  Identities=12%  Similarity=0.040  Sum_probs=48.2

Q ss_pred             ceEEEecCCc-c-HHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHH
Q 021707          162 KRLVDVGGSA-G-DCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECK  238 (309)
Q Consensus       162 ~~vlDvG~G~-G-~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~  238 (309)
                      .+|.=||+|. | .++..+.+.....+ ++++|. ++..+.+++..-......+..+....+|+|++.-.     .....
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~-V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp-----~~~~~   80 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGE-IVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVP-----VGASG   80 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcE-EEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCC-----HHHHH
Confidence            5788888774 3 34444444433246 888998 44444443322111111222112344698887653     33445


Q ss_pred             HHHHHHHHhcCCCcEEEE
Q 021707          239 LIMENCYKALLAGGKLIA  256 (309)
Q Consensus       239 ~iL~~~~~aL~pgG~l~i  256 (309)
                      .+++.+...++|+..++.
T Consensus        81 ~v~~~l~~~l~~~~iv~d   98 (307)
T PRK07502         81 AVAAEIAPHLKPGAIVTD   98 (307)
T ss_pred             HHHHHHHhhCCCCCEEEe
Confidence            677777778888875443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	309
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		9e-47
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		2e-43
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		8e-42
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		1e-41
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		6e-37
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		2e-21
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		8e-20
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		9e-19
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		2e-14
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		2e-14
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		2e-14
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		4e-11
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		5e-11
1qzz_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		9e-06
1x19_A	359	Crystal Structure Of Bchu Involved In Bacteriochlor		2e-04
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		3e-04
1xds_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		3e-04

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  183 bits (465), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 99/258 (38%), Positives = 151/258 (58%), Gaps = 7/258 (2%)
Query: 30  LPSGGGDAE-NLQCILRLLTSYGVFS----EHREFRGERKYSLTEIGKSLVTDAEGLSYA 84
           LP+   DA   L  +LRLL  Y + +      ++ + +R Y L  + K LV + +G+S +
Sbjct: 66  LPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSIS 125
Query: 85  PYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVS 144
              L +     M +W  + +AVLD  I PF K +G  A+ Y+G  P  N +  + +S  S
Sbjct: 126 ALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHS 184
Query: 145 VPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIP 204
              M  +L++Y GF+G+K LVDVGG  G  +  I+ K+  I +GINFDLP V+ +APS P
Sbjct: 185 TITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDLPHVIEDAPSYP 243
Query: 205 GVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264
           GV H+GGDMF SIP A+A+FMKW+   W+D+ C   ++NCY+AL   GK+I  E +L   
Sbjct: 244 GVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVA 303
Query: 265 SNESQRTRALLEGDIFVM 282
            + S  T+ ++  D+ ++
Sbjct: 304 PDSSLATKGVVHIDVIML 321

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/245 (35%), Positives = 136/245 (55%), Gaps = 6/245 (2%)
Query: 43  ILRLLTSYGVFS----EHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSA 98
           ILRLL SY V +    E ++ R  R Y    + K L  + +G+S A   L +     M +
Sbjct: 81  ILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMES 140
Query: 99  WPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGF 158
           W  + +AVLD  I PF K +G  A+ Y+G  P  N +    +   S+     +L+ Y+GF
Sbjct: 141 WYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGF 199
Query: 159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIP 218
           +G+  LVDVGG  G  +  I   H+   +G+NFDLP V+ EAP  PGVTH+GGDMF  +P
Sbjct: 200 EGLGTLVDVGGGVGATVAAI-AAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVP 258
Query: 219 AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGD 278
           + + I MKW+L  W+D  C  +++NCY AL A GK++  + +L  +   +  ++ +   D
Sbjct: 259 SGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVD 318
Query: 279 IFVMT 283
           + ++ 
Sbjct: 319 MIMLA 323

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  167 bits (422), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 90/247 (36%), Positives = 140/247 (56%), Gaps = 6/247 (2%)
Query: 40  LQCILRLLTSYGVFS-EHREF---RGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAF 95
           L  +LRLL SY V +   RE    + ER Y L  + K L  + +G+S AP++L       
Sbjct: 80  LDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVL 139
Query: 96  MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSY 155
           +  W  + +A+L+  I PF K +G   + Y+G    +N +  + +S  S   M  +L+ Y
Sbjct: 140 LEPWFYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMY 198
Query: 156 NGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFN 215
           NGF+G+  +VDVGG  G    MI+ K+  I   INFDLP V+ +AP+  GV H+GGDMF+
Sbjct: 199 NGFEGLTTIVDVGGGTGAVASMIVAKYPSI-NAINFDLPHVIQDAPAFSGVEHLGGDMFD 257
Query: 216 SIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALL 275
            +P  +AIF+KW+   W+D+ C  +++NCY AL   GK+I  E +L    + S  T+ ++
Sbjct: 258 GVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVI 317
Query: 276 EGDIFVM 282
             D  ++
Sbjct: 318 HTDALML 324

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 144/260 (55%), Gaps = 7/260 (2%)
Query: 40  LQCILRLLTSYGVF-SEHREFR---GERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAF 95
           L  +LRLL SY V  S  R       ER Y L+ +GK LV D      A +       A 
Sbjct: 85  LDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPAL 144
Query: 96  MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSY 155
           +  W    EAV+D  I+ F  VHG   Y + GK  +MN +  +++  V    M  +L+ Y
Sbjct: 145 LQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIY 204
Query: 156 NGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFN 215
            GF+G+  LVDVGG +G  L +I+ K+  I +GINFDLP+V+  AP + G+ H+GGDMF 
Sbjct: 205 TGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDMFA 263
Query: 216 SIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTR--A 273
           S+P  +A+ +K V   W+D++C   + NC+KAL   GK+I  E +L ++ N S+ ++  +
Sbjct: 264 SVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVS 323
Query: 274 LLEGDIFVMTIYRAKDDNSF 293
            L+  +F+    R + +  +
Sbjct: 324 TLDNLMFITVGGRERTEKQY 343

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score =  150 bits (380), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/212 (36%), Positives = 117/212 (55%), Gaps = 1/212 (0%)
Query: 61  GERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGE 120
            ER Y L+ +GK LV D      A +       A +  W    EAV+D  I+ F  VHG 
Sbjct: 110 AERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHGV 169
Query: 121 PAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQ 180
             Y + GK  + N +  ++   V        L+ Y GF+G+  LVDVGG +G  L +I+ 
Sbjct: 170 TKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELIIS 229
Query: 181 KHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLI 240
           K+  I +GINFDLP+V+  AP + G+ H+GGD F S+P  +A  +K V   W+D++C   
Sbjct: 230 KYPLI-KGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEF 288
Query: 241 MENCYKALLAGGKLIACEPVLLDDSNESQRTR 272
           + NC+KAL   GK+I  E +L ++ N S+ ++
Sbjct: 289 LSNCHKALSPNGKVIIVEFILPEEPNTSEESK 320

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 143/288 (49%), Gaps = 11/288 (3%)
Query: 19  PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFS--EHREFRGERK-YSLTEIGKSLV 75
           P+++S +++ IL       +N+Q ++R L   G F    ++E   E + Y+LT   + LV
Sbjct: 51  PITLSNLVS-ILQIPSTKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLV 109
Query: 76  TDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGL 135
              E L  AP V         +++  + + V +  +  F    G   + +  K PE N L
Sbjct: 110 KGTE-LCLAPMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTL 168
Query: 136 MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLP 194
              A++  S     ++ D    F+G++ +VDVGG  G   ++I +      C  + FD P
Sbjct: 169 YNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTC--VVFDRP 226
Query: 195 EVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAG--- 251
           +VV        +T++GGDMF S+P A+A+ +K VL  WTD +C  I++ C +A+ +    
Sbjct: 227 KVVENLCGSNNLTYVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKR 286
Query: 252 GKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYFFLFI 299
           GK+I  + V+ +  +E+Q T+  L  ++ +  +   + +   +  LFI
Sbjct: 287 GKVIVIDMVINEKKDENQLTQIKLLMNVTISCVNGKERNEEEWKKLFI 334

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 94.4 bits (233), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 134/284 (47%), Gaps = 8/284 (2%)
Query: 19  PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDA 78
           P+S+S +++ IL        N++ ++R L   G F      + E  Y+LT +   L+   
Sbjct: 51  PISLSNLVS-ILQVPSSKIGNVRRLMRYLAHNGFFEIIT--KEEESYALT-VASELLVRG 106
Query: 79  EGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRR 138
             L  AP V          ++  + + + +  +  F    G   + +  K PE N     
Sbjct: 107 SDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166
Query: 139 AISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVG 198
           A++  S     ++ D    F G++ +VDVGG  G   ++I +    + + I FD P+VV 
Sbjct: 167 AMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKL-KCIVFDRPQVVE 225
Query: 199 EAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAG---GKLI 255
                  +T++GGDMF SIP A+A+ +K++L  WTD +C  I++ C +A+      GK+ 
Sbjct: 226 NLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVT 285
Query: 256 ACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYFFLFI 299
             + V+    +E+Q T+  L  D+ +  +   + +   +  LFI
Sbjct: 286 IIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFI 329

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 70/264 (26%), Positives = 123/264 (46%), Gaps = 8/264 (3%)
Query: 19  PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDA 78
           P+S+S +++ IL        N++ + R L   G F      + E  Y+LT +   L+   
Sbjct: 51  PISLSNLVS-ILQVPSSKIGNVRRLXRYLAHNGFFEIIT--KEEESYALT-VASELLVRG 106
Query: 79  EGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRR 138
             L  AP V          ++  + + + +  +  F    G   + +  K PE N     
Sbjct: 107 SDLCLAPXVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166
Query: 139 AISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVG 198
           A +  S     ++ D    F G++ +VDVGG  G   ++I +    + + I FD P+VV 
Sbjct: 167 AXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKL-KCIVFDRPQVVE 225
Query: 199 EAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAG---GKLI 255
                  +T++GGD F SIP A+A+ +K++L  WTD +C  I++ C +A+      GK+ 
Sbjct: 226 NLSGSNNLTYVGGDXFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVT 285
Query: 256 ACEPVLLDDSNESQRTRALLEGDI 279
             + V+    +E+Q T+  L  D+
Sbjct: 286 IIDXVIDKKKDENQVTQIKLLXDV 309

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 119 GEPAYSYYGKMPEMNGL--MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLR 176
           GE  + +  K  E + L   + A++  S  F   + ++   F+G++ LVDVGG  G   +
Sbjct: 150 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 209
Query: 177 MILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDD 235
           +I +   H  C    FD P+VVG       +  +GGDMF SIP+A+A+ +KWVL  W D+
Sbjct: 210 LIHEIFPHLKC--TVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDE 267
Query: 236 ECKLIMENCYKALL---AGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKD 289
           +   I++N  +A+      GK+I  +  + + S++   T   L+ D+ ++T++  K+
Sbjct: 268 QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKE 324

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 119 GEPAYSYYGKMPEMNGL--MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLR 176
           GE  + +  K  E + L   + A++  S  F   + ++   F+G++ LVDVGG  G   +
Sbjct: 149 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 208
Query: 177 MILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDD 235
           +I +   H  C    FD P+VVG       +  +GGDMF SIP+A+A+ +KWVL  W D+
Sbjct: 209 LIHEIFPHLKC--TVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDE 266
Query: 236 ECKLIMENCYKALL---AGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKD 289
           +   I++N  +A+      GK+I  +  + + S++   T   L+ D+ ++T++  K+
Sbjct: 267 QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKE 323

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 95/177 (53%), Gaps = 8/177 (4%)
Query: 119 GEPAYSYYGKMPEMNGL--MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLR 176
           GE  + +  K  E + L   + A++  S  F   + ++   F+G++ LVDVGG  G   +
Sbjct: 146 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 205
Query: 177 MILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDD 235
           +I +   H  C    FD P+VVG       +  +GGDMF SIP+A+A+ +KWVL  W D+
Sbjct: 206 LIHEIFPHLKC--TVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDE 263
Query: 236 ECKLIMENCYKALL---AGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKD 289
           +   I++N  +A+      GK+I  +  + + S++   T   L+ D+ ++T++  K+
Sbjct: 264 QSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKE 320

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 103/237 (43%), Gaps = 18/237 (7%)
Query: 40  LQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDAFMSAW 99
           L+ +LRLL    V  E      + +++LT+ G +L +D+   + A  +L      F   W
Sbjct: 72  LRRVLRLLAVRDVVRE-----SDGRFALTDKGAALRSDSPVPARA-GILXFTDTXF---W 122
Query: 100 PLVHE--AVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNG 157
              H   + L P    F  + G    +Y+    E+  L       VS      +L     
Sbjct: 123 TXSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGXETVSAAEHL-ILARAGD 181
Query: 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVG----EAPSIPGVTHI-GGD 212
           F     + DVGG  G  L  +L++H  + +G+  D  EVV     +AP + G   +  GD
Sbjct: 182 FPATGTVADVGGGRGGFLLTVLREHPGL-QGVLLDRAEVVARHRLDAPDVAGRWKVVEGD 240
Query: 213 MFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQ 269
               +P A+   +K +L  W D++   I+ NC +   A G+++  + V+ + ++  Q
Sbjct: 241 FLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPEGNDAHQ 297

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 112/239 (46%), Gaps = 26/239 (10%)
Query: 34  GGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS-LVTDAEGLSYAPYVLQHHQ 92
           G DAE +  ++RLL ++ +      F+G+ +        S L+ D EG S+   VL + +
Sbjct: 52  GSDAERIHRLMRLLVAFEI------FQGDTRDGYANTPTSHLLRDVEG-SFRDMVLFYGE 104
Query: 93  DAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPF--MTS 150
           + F +AW    EA+L  T   F    GE  YSY  + P+       A+   ++ F  +  
Sbjct: 105 E-FHAAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPR 162
Query: 151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-----IPG 205
           +LD    F+G +  VDVGG +G+  + ILQ       G+  D    +G A       + G
Sbjct: 163 LLD----FRG-RSFVDVGGGSGELTKAILQAEPS-ARGVMLDREGSLGVARDNLSSLLAG 216
Query: 206 --VTHIGGDMFNSIPAANAIFMKWVLATWTDDECKL-IMENCYKALLAGGKLIACEPVL 261
             V+ +GGDM   +P+   I++   +    D+   L ++ NC +A+   G+++  E  +
Sbjct: 217 ERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI 275

>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 8/113 (7%)
Query: 153 DSYNGFKGVKRLVDVGGSAGDCLRMI-LQKHHFICEGINFDLP-----EVVGEAPSIPGV 206
           D+Y+ +  V+ ++DVGG  G  L  I L+  H     +    P         +A     V
Sbjct: 176 DAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRV 234
Query: 207 THIGGDMFNSIP-AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE 258
           T   GD F  +P  A+ + + +VL  W+D++   I+  C +AL  GG+L+  +
Sbjct: 235 TVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD 287

>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll C Biosynthesis Length = 359

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP---EVVGEAPSI 203
           F   +L       GVK+++DVGG  GD    +L KH    +    +LP   ++V E  + 
Sbjct: 177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAML-KHFPELDSTILNLPGAIDLVNENAAE 235
Query: 204 PGVTH----IGGDMFN-SIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE 258
            GV      I  D++  S P A+A+    +L +  +    ++ +  + A+ +GG+L+  +
Sbjct: 236 KGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295
Query: 259 PVLLDDSN 266
            V+ D  N
Sbjct: 296 MVIDDPEN 303

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 164 LVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAP---SIPGVTHIG---GDMF-NS 216
           + D+GG AG   +  +  +   C+   FD+PEVV  A    S      I    GD F + 
Sbjct: 183 MCDLGGGAGALAKECMSLYPG-CKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDP 241
Query: 217 IPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264
           +P A+   +  VL  W D +C  ++E  Y     GG ++  E +L +D
Sbjct: 242 LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED 289

>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 206 VTHIGGDMFNSIP-AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE 258
           VT   GD F  +P  A+ + + +VL  W+D++   I+  C +AL  GG+L+  +
Sbjct: 234 VTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD 287

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	309
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	3e-83
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	3e-82
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	3e-82
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	2e-78
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	2e-75
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	1e-73
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	4e-73
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	4e-73
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	1e-71
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	1e-70
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	8e-68
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	5e-54
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	2e-49
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	1e-47
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	2e-44
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	6e-07
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  254 bits (651), Expect = 3e-83
 Identities = 92/278 (33%), Positives = 144/278 (51%), Gaps = 7/278 (2%)

Query: 17  NTPLSVSQILTC--ILPSGGGDAENLQCILRLLTSYGVFSEHR----EFRGERKYSLTEI 70
              +S S+I +              L  +LRLL SY V +       +   ER Y L+ +
Sbjct: 60  GAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMV 119

Query: 71  GKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMP 130
           GK LV D      A +       A +  W    EAV+D  I+ F  VHG   Y + GK  
Sbjct: 120 GKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDK 179

Query: 131 EMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGIN 190
           +MN +  +++  V    M  +L+ Y GF+G+  LVDVGG +G  L +I+ K+  + +GIN
Sbjct: 180 KMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGIN 238

Query: 191 FDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLA 250
           FDLP+V+  AP + G+ H+GGDMF S+P  +A+ +K V   W+D++C   + NC+KAL  
Sbjct: 239 FDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSP 298

Query: 251 GGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
            GK+I  E +L ++ N S+ ++ +   D  +      +
Sbjct: 299 NGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVGGR 336

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  252 bits (644), Expect = 3e-82
 Identities = 90/272 (33%), Positives = 146/272 (53%), Gaps = 6/272 (2%)

Query: 17  NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR----EFRGERKYSLTEIGK 72
           +  +S ++I   +  +       L  +LRLL SY V +         + ER Y L  + K
Sbjct: 57  SGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCK 116

Query: 73  SLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEM 132
            L  + +G+S AP++L       +  W  + +A+L+  I PF K +G   + Y+G    +
Sbjct: 117 FLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRI 175

Query: 133 NGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFD 192
           N +  + +S  S   M  +L+ YNGF+G+  +VDVGG  G    MI+ K+  I   INFD
Sbjct: 176 NKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSI-NAINFD 234

Query: 193 LPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGG 252
           LP V+ +AP+  GV H+GGDMF+ +P  +AIF+KW+   W+D+ C  +++NCY AL   G
Sbjct: 235 LPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHG 294

Query: 253 KLIACEPVLLDDSNESQRTRALLEGDIFVMTI 284
           K+I  E +L    + S  T+ ++  D  ++  
Sbjct: 295 KVIVAEYILPPSPDPSIATKVVIHTDALMLAY 326

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  251 bits (643), Expect = 3e-82
 Identities = 90/272 (33%), Positives = 145/272 (53%), Gaps = 7/272 (2%)

Query: 18  TPLSVSQILTCILPSGGGDA-ENLQCILRLLTSYGVFSEHRE----FRGERKYSLTEIGK 72
             L+ +++   +  +   +A + +  ILRLL SY V +   E     R  R Y    + K
Sbjct: 55  KSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCK 114

Query: 73  SLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEM 132
            L  + +G+S A   L +     M +W  + +AVLD  I PF K +G  A+ Y+G  P  
Sbjct: 115 FLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRF 173

Query: 133 NGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFD 192
           N +    +   S+     +L+ Y+GF+G+  LVDVGG  G  +  I   +  I +G+NFD
Sbjct: 174 NRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTI-KGVNFD 232

Query: 193 LPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGG 252
           LP V+ EAP  PGVTH+GGDMF  +P+ + I MKW+L  W+D  C  +++NCY AL A G
Sbjct: 233 LPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHG 292

Query: 253 KLIACEPVLLDDSNESQRTRALLEGDIFVMTI 284
           K++  + +L  +   +  ++ +   D+ ++  
Sbjct: 293 KVVLVQCILPVNPEANPSSQGVFHVDMIMLAH 324

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  241 bits (617), Expect = 2e-78
 Identities = 70/272 (25%), Positives = 127/272 (46%), Gaps = 8/272 (2%)

Query: 16  ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLV 75
              P+S+S +++  L        N++ ++R L   G F    +   E  Y+LT   + LV
Sbjct: 48  HGKPISLSNLVSI-LQVPSSKIGNVRRLMRYLAHNGFFEIITK--EEESYALTVASELLV 104

Query: 76  TDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGL 135
             ++    AP V          ++  + + + +  +  F    G   + +  K PE N  
Sbjct: 105 RGSDL-CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTS 163

Query: 136 MRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPE 195
              A++  S     ++ D    F G++ +VDVGG  G   ++I +      + I FD P+
Sbjct: 164 FNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDRPQ 222

Query: 196 VVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKAL---LAGG 252
           VV        +T++GGDMF SIP A+A+ +K++L  WTD +C  I++ C +A+      G
Sbjct: 223 VVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRG 282

Query: 253 KLIACEPVLLDDSNESQRTRALLEGDIFVMTI 284
           K+   + V+    +E+Q T+  L  D+ +  +
Sbjct: 283 KVTIIDMVIDKKKDENQVTQIKLLMDVNMACL 314

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  234 bits (598), Expect = 2e-75
 Identities = 61/280 (21%), Positives = 122/280 (43%), Gaps = 22/280 (7%)

Query: 14  RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS 73
            L + P + +++        G DA+ L+ +LRLL    V  E      + +++LT+ G +
Sbjct: 50  HLVDGPRTPAELAAAT----GTDADALRRVLRLLAVRDVVRES-----DGRFALTDKGAA 100

Query: 74  LVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMN 133
           L +D+  +     +L      F +    V  A+       F  + G    +Y+    E+ 
Sbjct: 101 LRSDS-PVPARAGILMFTDTMFWTMSHRVASALGPERP-AFADIFGSSLDAYFDGDAEVE 158

Query: 134 GLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL 193
            L    +  VS      +  +   F     + DVGG  G  L  +L++H  + +G+  D 
Sbjct: 159 ALYYEGMETVSAAEHLILARAG-DFPATGTVADVGGGRGGFLLTVLREHPGL-QGVLLDR 216

Query: 194 PEVV----GEAPSIPG-VTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKAL 248
            EVV     +AP + G    + GD    +P A+   +K +L  W D++   I+ NC + +
Sbjct: 217 AEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVM 276

Query: 249 LAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
            A G+++  + V + + N++ +++ +   D  ++     +
Sbjct: 277 PAHGRVLVIDAV-VPEGNDAHQSKEM---DFMMLAARTGQ 312

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  229 bits (586), Expect = 1e-73
 Identities = 74/285 (25%), Positives = 129/285 (45%), Gaps = 15/285 (5%)

Query: 16  ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR------EFRGERKYSLTE 69
              P+++S++ +  L         L   LRLLT  G F++        +   E  YSLT 
Sbjct: 42  HGKPMTLSELAS-SLKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTP 100

Query: 70  IGKSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVL-DPTIEPFVKVHGEPAYSYYGK 128
             K L++       +  V      + +  W    +    D     F    GE  + +  K
Sbjct: 101 PSKLLISGKPT-CLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNK 159

Query: 129 MPEMNGLMR--RAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFIC 186
             E + L     A++  S  F   + ++   F+G++ LVDVGG  G   ++I +    + 
Sbjct: 160 DSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLK 219

Query: 187 EGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYK 246
               FD P+VVG       +  +GGDMF SIP+A+A+ +KWVL  W D++   I++N  +
Sbjct: 220 -CTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKE 278

Query: 247 AL---LAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           A+      GK+I  +  + + S++   T   L+ D+ ++T++  K
Sbjct: 279 AISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGK 323

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  228 bits (584), Expect = 4e-73
 Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 26/283 (9%)

Query: 15  LANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSL 74
           L   P + + +        G   + L+ +LRLL + GVF +      +  ++   +   L
Sbjct: 67  LQEGPRTATALAEAT----GAHEQTLRRLLRLLATVGVFDDLGH---DDLFAQNALSAVL 119

Query: 75  VTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNG 134
           + D      A             AW  +  +V       F   +G   +    + P+   
Sbjct: 120 LPDP-ASPVATDARFQAAPWHWRAWEQLTHSVRTGEA-SFDVANGTSFWQLTHEDPKARE 177

Query: 135 LMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL 193
           L  RA+  VS+     V  +Y+ F G    VD+GG  G  +  +L         G   + 
Sbjct: 178 LFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPG--LRGTLLER 234

Query: 194 PEVVGEAPSI-------PGVTHIGGDMFNSIP-AANAIFMKWVLATWTDDECKLIMENCY 245
           P V  EA  +            + GD F +IP  A+   +K VL  W DD+   I+    
Sbjct: 235 PPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIA 294

Query: 246 KALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
            A+    +L+  + ++ +    S      L  D+ ++ +    
Sbjct: 295 TAMKPDSRLLVIDNLIDERPAAST-----LFVDLLLLVLVGGA 332

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  228 bits (583), Expect = 4e-73
 Identities = 53/284 (18%), Positives = 108/284 (38%), Gaps = 24/284 (8%)

Query: 14  RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS 73
            +     +V  +            E L  ++R L + G+  E        ++  TE+G+ 
Sbjct: 47  HILAGARTVKALAART----DTRPEALLRLIRHLVAIGLLEED----APGEFVPTEVGEL 98

Query: 74  LVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMN 133
           L  D      A + L         ++  + +A+       +  ++G+P Y      P++ 
Sbjct: 99  LADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRP-TYESIYGKPFYEDLAGRPDLR 157

Query: 134 GLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFD 192
                 ++        +   +Y  +  V+ ++DVGG  G     I ++  H        +
Sbjct: 158 ASFDSLLACDQDVAFDAPAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPH--VSATVLE 214

Query: 193 LPEVVGEAPSI-------PGVTHIGGDMFNSIPA-ANAIFMKWVLATWTDDECKLIMENC 244
           +   V  A S          V  + GD F  +P  A+AI + +VL  W D +   I+  C
Sbjct: 215 MAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRC 274

Query: 245 YKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
            +AL  GG+++  E   L +++ +++   L   D+ ++      
Sbjct: 275 AEALEPGGRILIHERDDLHENSFNEQFTEL---DLRMLVFLGGA 315

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  224 bits (574), Expect = 1e-71
 Identities = 53/283 (18%), Positives = 99/283 (34%), Gaps = 19/283 (6%)

Query: 14  RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS 73
            L     +++ +            + L  ++R LT  GV     +    R    T +G  
Sbjct: 44  HLLAGADTLAGLADRT----DTHPQALSRLVRHLTVVGVLEGGEK--QGRPLRPTRLGML 97

Query: 74  LVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMN 133
           L         A   L         A+  + + V       +   +G P +        + 
Sbjct: 98  LADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRP-AYAGRYGRPFWEDLSADVALA 156

Query: 134 GLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL 193
                 +S        +  D+Y  +  V+ ++DVGG  G  L  I  +   +  G   +L
Sbjct: 157 DSFDALMSCDEDLAYEAPADAY-DWSAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVEL 214

Query: 194 PEVVGEAPSI-------PGVTHIGGDMFNSIPA-ANAIFMKWVLATWTDDECKLIMENCY 245
                 A            VT   GD F  +P  A+ + + +VL  W+D++   I+  C 
Sbjct: 215 AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCV 274

Query: 246 KALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           +AL  GG+L+  +   ++     +    LL  D+ ++T    +
Sbjct: 275 RALEPGGRLLVLDRADVEGDGADRFFSTLL--DLRMLTFMGGR 315

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  221 bits (565), Expect = 1e-70
 Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 26/283 (9%)

Query: 14  RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS 73
            +A    + ++I +      G  A++L  +LR L + G+F+      G+  Y LTE G+ 
Sbjct: 33  HIAAGHRTAAEIASAA----GAHADSLDRLLRHLVAVGLFTRD----GQGVYGLTEFGEQ 84

Query: 74  LVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMN 133
           L  D          +          +  +  ++       +   +G   +   G  P ++
Sbjct: 85  LRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQP-AYPVRYGTSFWEDLGSDPVLS 143

Query: 134 GLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL 193
                 +S       T +   Y  +  +  +VDVGG +G  L  +L  H  +  G   DL
Sbjct: 144 ASFDTLMSHHLELDYTGIAAKY-DWAALGHVVDVGGGSGGLLSALLTAHEDL-SGTVLDL 201

Query: 194 PEVVGEAPSI-------PGVTHIGGDMFNSIPA-ANAIFMKWVLATWTDDECKLIMENCY 245
                 A               + G  F+ +PA A    +  VL  W D     I+  C 
Sbjct: 202 QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCA 261

Query: 246 KALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
           +A  +GG ++  E V  D+        A    D+ ++T +  K
Sbjct: 262 EAAGSGGVVLVIEAVAGDE-------HAGTGMDLRMLTYFGGK 297

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  214 bits (546), Expect = 8e-68
 Identities = 63/284 (22%), Positives = 116/284 (40%), Gaps = 30/284 (10%)

Query: 14  RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS 73
            + +   S   +   +    G DAE +  ++RLL ++ +F           Y+ T     
Sbjct: 36  LIESGIDSDETLAAAV----GSDAERIHRLMRLLVAFEIFQG----DTRDGYANTPTSH- 86

Query: 74  LVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMN 133
           L+ D EG S+   VL  + + F +AW    EA+L  T   F    GE  YSY  + P+  
Sbjct: 87  LLRDVEG-SFRDMVL-FYGEEFHAAWTPACEALLSGTP-GFELAFGEDFYSYLKRCPDAG 143

Query: 134 GLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFD 192
                A+   ++ F   +    + F+G +  VDVGG +G+  + ILQ        G+  D
Sbjct: 144 RRFLLAMKASNLAFH-EIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPS--ARGVMLD 198

Query: 193 LPEVVGEAPSI-------PGVTHIGGDMFNSIPA-ANAIFMKWVLATWTDDECKLIMENC 244
               +G A            V+ +GGDM   +P+  +   +  ++    +     ++ NC
Sbjct: 199 REGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNC 258

Query: 245 YKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAK 288
            +A+   G+++  E  +   ++E      L   D+ +      +
Sbjct: 259 REAMAGDGRVVVIERTI--SASEPSPMSVLW--DVHLFMACAGR 298

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  179 bits (455), Expect = 5e-54
 Identities = 45/281 (16%), Positives = 96/281 (34%), Gaps = 30/281 (10%)

Query: 14  RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS 73
            +A  P  ++ +        G     L+ +L  L    V +       + K+SLTE    
Sbjct: 59  HMAEGPKDLATLAADT----GSVPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADY 109

Query: 74  LVTDAEG--LSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPE 131
           + +        +   V +         +  + +AV           + +    Y     E
Sbjct: 110 MFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQK-------NFKGQVPYPPVTRE 162

Query: 132 MNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGIN 190
            N          +   +  +L+      GVK+++DVGG  GD    +L+       +   
Sbjct: 163 DNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPE--LDSTI 219

Query: 191 FDLPEVVGEAPSIPG-------VTHIGGDMFN-SIPAANAIFMKWVLATWTDDECKLIME 242
            +LP  +               +  I  D++  S P A+A+    +L +  +    ++ +
Sbjct: 220 LNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCK 279

Query: 243 NCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMT 283
             + A+ +GG+L+  + V+ D  N +    +       +  
Sbjct: 280 KAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMPF 320

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  166 bits (423), Expect = 2e-49
 Identities = 36/275 (13%), Positives = 73/275 (26%), Gaps = 35/275 (12%)

Query: 14  RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS 73
            ++    S   +              ++ +   L   G  ++         Y LT     
Sbjct: 34  AISQGIESSQSLAQKC----QTSERGMRMLCDYLVIIGFMTKQ-----AEGYRLTSDSAM 84

Query: 74  LVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKM---P 130
            +           +         + +  +  AVL           G  A S  G +    
Sbjct: 85  FLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLK----------GGTAISSEGTLSPEH 134

Query: 131 EMNGLMRRAISGVSVPFMTSVLDSYN-GFKGVKRLVDVGGSAGDCLRMILQKH-HFICEG 188
            +     +A+S +       +    N       +++D+  S G     + Q + +   E 
Sbjct: 135 PVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPN--AEI 192

Query: 189 INFDLPEVVGEAPSIPG-------VTHIGGDMFNS--IPAANAIFMKWVLATWTDDECKL 239
              D   V+  A               I G  F        + + +   L  +    C+ 
Sbjct: 193 FGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQ 252

Query: 240 IMENCYKALLAGGKLIACEPVLLDDSNESQRTRAL 274
           ++     AL   GK+I  + +   D        A 
Sbjct: 253 LLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAF 287

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  162 bits (412), Expect = 1e-47
 Identities = 43/262 (16%), Positives = 85/262 (32%), Gaps = 29/262 (11%)

Query: 34  GGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQD 93
           G        +L  L + G+ ++  +      +  T + +  +T        P V   HQ 
Sbjct: 67  GMVEGKAAILLHALAALGLLTKEGD-----AFRNTALTERYLTTTSADYIGPIVE--HQY 119

Query: 94  AFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLD 153
                WP + E +         K       S +            A+  +S P +  V +
Sbjct: 120 LQWDNWPRLGEILRSE------KPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSE 173

Query: 154 SYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPEVVGEAPSIPG------- 205
               F   + ++D+ G  G  L  +L++H      G  +DLP     A            
Sbjct: 174 LG-VFARARTVIDLAGGHGTYLAQVLRRHPQ--LTGQIWDLPTTRDAARKTIHAHDLGGR 230

Query: 206 VTHIGGDMFNSIPA----ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL 261
           V     ++ ++       A+ + +   L  +   E + ++ +    +  GG L+     +
Sbjct: 231 VEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTM 290

Query: 262 LDDSNESQRTRALLEGDIFVMT 283
            DD      + A     + V T
Sbjct: 291 NDDRVTPALS-ADFSLHMMVNT 311

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  154 bits (391), Expect = 2e-44
 Identities = 46/281 (16%), Positives = 92/281 (32%), Gaps = 30/281 (10%)

Query: 16  ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLV 75
                ++ +I        G      Q +L    + G      +     +Y L + G  L+
Sbjct: 47  KREGYTLQEISGRT----GLTRYAAQVLLEASLTIGTILLEED-----RYVLAKAGWFLL 97

Query: 76  TDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHG--EPAYSYYGKMPE-M 132
            D      A   ++ + D        + EA+L+      +KV G     Y    ++PE +
Sbjct: 98  ND----KMARVNMEFNHDVNYQGLFHLEEALLNGRP-EGLKVFGEWPTIYEGLSQLPEQV 152

Query: 133 NGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFD 192
                      S       L+        KRL+D+GG+ G      +Q +  + E    D
Sbjct: 153 QKSWFGFDHFYSDQSFGKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEV-EVTIVD 210

Query: 193 LPEVVGEAPSIPG-------VTHIGGDMFN---SIPA-ANAIFMKWVLATWTDDECKLIM 241
           LP+ +               +   G ++ +     P   +A++M   L  ++++E   I+
Sbjct: 211 LPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISIL 270

Query: 242 ENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVM 282
               +++    K+   E +      E+           F  
Sbjct: 271 TRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTA 311

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 48.5 bits (115), Expect = 6e-07
 Identities = 20/151 (13%), Positives = 50/151 (33%), Gaps = 14/151 (9%)

Query: 125 YYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF 184
             G    ++ +   +    S  F+   L       G    +D G   G   + +L     
Sbjct: 48  MLGGYGHISSIDINS----SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR 103

Query: 185 ICEGINFDLPEVVGEAPSIPG------VTHIGGDMFNSIPAAN---AIFMKWVLATWTDD 235
             + ++    + + +A +  G        +    + +  P  +    I+++WV+   TD 
Sbjct: 104 EVDMVDIT-EDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQ 162

Query: 236 ECKLIMENCYKALLAGGKLIACEPVLLDDSN 266
                +  C  +L   G ++  + +  +   
Sbjct: 163 HLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI 193

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 47.4 bits (112), Expect = 2e-06
 Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 8/110 (7%)

Query: 162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEA----PSIPGVTHIGGDMFNSI 217
            R +D G   G   + +L K +   + +      ++ EA      +P    I   M  + 
Sbjct: 95  SRALDCGAGIGRITKNLLTKLYATTDLLEPV-KHMLEEAKRELAGMPVGKFILASMETAT 153

Query: 218 PAAN---AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD 264
              N    I ++W     TD +     ++C +AL   G +   E     D
Sbjct: 154 LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD 203

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 6e-06
 Identities = 43/296 (14%), Positives = 82/296 (27%), Gaps = 95/296 (32%)

Query: 36  DAENLQCILR-LLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAPYVLQHHQDA 94
           +A NL C  + LLT+       R              K +       +     L HH   
Sbjct: 260 NAFNLSC--KILLTT-------RF-------------KQVTDFLSAATTTHISLDHHSMT 297

Query: 95  FMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMP-EMNGLMRRAISGVSVPFMTSVLD 153
                        D      +K            +P E+     R +S ++   +   L 
Sbjct: 298 L----------TPDEVKSLLLKYLDCRP----QDLPREVLTTNPRRLSIIAE-SIRDGLA 342

Query: 154 SYNGFK--GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGG 211
           +++ +K     +L  +  S+ + L     +  F    +    P                 
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSA-------------- 385

Query: 212 DMFNSIPAANAIFMKWVLAT-WTD---DECKLIMENCYKALLA--GGKLIACE-PVLLDD 264
                IP         +L+  W D    +  +++   +K  L     K      P +  +
Sbjct: 386 ----HIPTI-------LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 265 -----SNESQRTRALLEGDIFVMTIYRAKDDNSF-------YFFLFILPVSYALSG 308
                 NE    R++++       I +  D +         YF+  I    + L  
Sbjct: 435 LKVKLENEYALHRSIVDHY----NIPKTFDSDDLIPPYLDQYFYSHI---GHHLKN 483

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	309
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	100.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	100.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	100.0
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	100.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	100.0
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	100.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	100.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	100.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.7
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.64
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.61
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.55
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.54
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.51
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.51
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.5
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.49
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.48
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.47
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.46
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.46
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.45
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.45
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.44
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.44
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.44
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.43
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.43
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.43
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.43
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.43
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.42
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.42
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.42
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.42
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.41
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.41
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.41
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.41
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.41
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.4
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.4
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.39
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.39
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.38
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.38
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.38
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.38
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.38
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.37
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.37
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.37
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.37
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.37
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.35
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.35
3ocj_A	305	Putative exported protein; structural genomics, PS	99.35
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.35
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.35
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.35
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.35
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.34
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.34
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.34
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.33
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.32
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.3
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.3
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.29
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.29
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.28
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.27
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.27
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.26
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.26
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.26
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.25
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.24
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.22
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.22
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.21
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.21
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.2
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.2
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.19
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.19
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.19
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.18
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.18
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.17
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.17
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.17
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.17
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.17
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.16
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.16
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.16
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.16
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.15
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.14
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.14
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.14
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.14
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.13
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.13
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.13
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.13
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.13
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.13
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.12
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.12
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.12
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.11
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.11
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.11
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.1
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.1
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.1
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.09
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.09
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.08
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.08
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.07
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.07
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.07
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.07
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.07
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.05
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.05
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.05
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.04
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.04
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.04
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.02
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.02
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.02
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.01
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.01
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.01
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.01
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.01
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.01
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.01
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.0
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.99
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.99
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.99
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.99
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.98
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.98
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.97
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.97
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.97
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.96
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.96
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.96
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.96
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.95
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.95
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.94
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.93
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.93
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.93
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.93
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.93
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.93
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.92
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.92
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.92
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.92
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.91
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.9
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.9
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.89
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.89
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.89
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.88
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.88
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.88
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.88
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.87
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.87
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.87
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.87
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.87
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.86
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.85
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.84
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.83
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.83
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.83
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.83
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.82
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.81
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.81
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.81
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.81
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.8
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.79
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.79
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.79
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.78
2o07_A	304	Spermidine synthase; structural genomics, structur	98.77
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.77
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.76
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.76
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.76
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.76
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.76
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.76
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.75
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.75
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.73
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.72
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.68
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.66
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.65
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.64
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.62
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.61
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.61
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.59
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.58
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.55
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.55
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.53
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.52
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.48
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.48
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.45
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.44
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.36
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.35
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.35
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.33
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.33
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.31
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.31
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.31
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.24
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.22
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.22
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.2
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.2
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.18
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.18
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.16
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.14
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.13
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.11
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.1
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.09
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.09
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.03
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.01
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.99
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.96
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.95
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.88
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.82
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.79
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.77
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	97.75
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.71
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.69
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.68
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	97.66
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	97.62
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.56
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.51
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.31
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.28
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.26
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.2
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.18
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.08
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.03
3khk_A	544	Type I restriction-modification system methylation	97.01
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.0
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	96.96
3ll7_A	410	Putative methyltransferase; methytransferase, stru	96.91
3lkd_A	542	Type I restriction-modification system methyltrans	96.83
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	96.72
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.67
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	96.61
1y0u_A	96	Arsenical resistance operon repressor, putative; s	96.35
3cvo_A	202	Methyltransferase-like protein of unknown functio;	96.27
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	96.26
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.18
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.15
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	96.14
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	96.07
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	95.98
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	95.88
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	95.86
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	95.75
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	95.74
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	95.73
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	95.72
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	95.68
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	95.68
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	95.61
3jth_A	98	Transcription activator HLYU; transcription factor	95.57
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	95.54
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	95.42
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	95.35
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	95.33
2pg4_A	95	Uncharacterized protein; structural genomics, join	95.29
3hrs_A	214	Metalloregulator SCAR; DTXR/MNTR family member, tr	95.27
2y75_A	129	HTH-type transcriptional regulator CYMR; DNA bindi	95.23
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	95.21
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	95.16
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	95.15
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	95.13
2wte_A	244	CSA3; antiviral protein, viral resistance, winged	95.1
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	95.06
2kko_A	108	Possible transcriptional regulatory protein (possi	95.02
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	94.93
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	94.9
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	94.9
3lwf_A	159	LIN1550 protein, putative transcriptional regulato	94.86
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	94.83
2h09_A	155	Transcriptional regulator MNTR; transcription regu	94.76
1ylf_A	149	RRF2 family protein; structural genomics, transcri	94.75
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	94.74
1mkm_A	249	ICLR transcriptional regulator; structural genomic	94.66
2fsw_A	107	PG_0823 protein; alpha-beta structure, helix-turn-	94.62
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	94.58
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	94.47
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	94.43
2f2e_A	146	PA1607; transcription factor, helix-TRUN-helix, AP	94.41
1xd7_A	145	YWNA; structural genomics, protein structure initi	94.4
2qvo_A	95	Uncharacterized protein AF_1382; PSI, structural g	94.39
3t8r_A	143	Staphylococcus aureus CYMR; transcriptional regula	94.36
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	94.35
3hsr_A	140	HTH-type transcriptional regulator SARZ; helix-tur	94.35
3kp7_A	151	Transcriptional regulator TCAR; multiple drug resi	94.35
2obp_A	96	Putative DNA-binding protein; structural genomics,	94.33
3cdh_A	155	Transcriptional regulator, MARR family; helix-turn	94.28
3k0l_A	162	Repressor protein; helix-turn-helix, structural ge	94.25
3bja_A	139	Transcriptional regulator, MARR family, putative;	94.23
1sfx_A	109	Conserved hypothetical protein AF2008; structural	94.23
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	94.22
4a5n_A	131	Uncharacterized HTH-type transcriptional regulato;	94.22
2g7u_A	257	Transcriptional regulator; ICLR family, structural	94.14
3bj6_A	152	Transcriptional regulator, MARR family; helix-turn	94.13
3bpv_A	138	Transcriptional regulator; MARR, DNA binding, tran	94.08
2gxg_A	146	146AA long hypothetical transcriptional regulator;	94.05
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	94.01
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	93.93
3k69_A	162	Putative transcription regulator; putative transcr	93.92
2fbh_A	146	Transcriptional regulator PA3341; MARR, transcript	93.91
3nrv_A	148	Putative transcriptional regulator (MARR/EMRR FAM;	93.9
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	93.87
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	93.87
2a61_A	145	Transcriptional regulator TM0710; APC4350, MCSG, m	93.83
1jgs_A	138	Multiple antibiotic resistance protein MARR; trans	93.82
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	93.82
2pex_A	153	Transcriptional regulator OHRR; transcription regu	93.81
1yyv_A	131	Putative transcriptional regulator; reductive meth	93.8
3df8_A	111	Possible HXLR family transcriptional factor; APC89	93.78
2nnn_A	140	Probable transcriptional regulator; structural gen	93.75
2qww_A	154	Transcriptional regulator, MARR family; YP_013417.	93.7
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	93.69
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	93.67
2ia2_A	265	Putative transcriptional regulator; SAD, PSI-2, st	93.59
2bv6_A	142	MGRA, HTH-type transcriptional regulator MGRA; mul	93.52
3s2w_A	159	Transcriptional regulator, MARR family; structural	93.52
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	93.47
1lj9_A	144	Transcriptional regulator SLYA; HTH DNA binding pr	93.39
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	93.37
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	93.26
2zkz_A	99	Transcriptional repressor PAGR; protein-DNA, HTH m	93.24
1bja_A	95	Transcription regulatory protein MOTA; activation	93.22
3cjn_A	162	Transcriptional regulator, MARR family; silicibact	93.2
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.18
3bro_A	141	Transcriptional regulator; helix_TURN_helix, multi	93.16
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	93.1
3eco_A	139	MEPR; mutlidrug efflux pump regulator winged helix	93.09
1s3j_A	155	YUSO protein; structural genomics, MARR transcript	93.02
3u1d_A	151	Uncharacterized protein; GNTR-superfamily, structu	92.92
2rdp_A	150	Putative transcriptional regulator MARR; PFAM PF01	92.92
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.91
4hbl_A	149	Transcriptional regulator, MARR family; HTH, trans	92.88
3boq_A	160	Transcriptional regulator, MARR family; MARR famil	92.87
3f3x_A	144	Transcriptional regulator, MARR family, putative;	92.77
2eth_A	154	Transcriptional regulator, putative, MAR family; M	92.71
2fbi_A	142	Probable transcriptional regulator; MARR, APC5816,	92.68
3e6m_A	161	MARR family transcriptional regulator; APC88769, s	92.64
2nyx_A	168	Probable transcriptional regulatory protein, RV14;	92.64
2frh_A	127	SARA, staphylococcal accessory regulator A; winged	92.6
3fm5_A	150	Transcriptional regulator; MCSG, PF04017, PSI, MAR	92.49
3deu_A	166	Transcriptional regulator SLYA; MARR, WING-helix,	92.46
3ufb_A	530	Type I restriction-modification system methyltran	91.93
1p6r_A	82	Penicillinase repressor; transcription regulation,	91.91
2d1h_A	109	ST1889, 109AA long hypothetical transcriptional re	91.89
1z91_A	147	Organic hydroperoxide resistance transcriptional;	91.64
3jw4_A	148	Transcriptional regulator, MARR/EMRR family; DNA-b	91.63
3u2r_A	168	Regulatory protein MARR; structural genomics, PSI-	91.63
1ku9_A	152	Hypothetical protein MJ223; putative transcription	91.57
3nqo_A	189	MARR-family transcriptional regulator; structural	91.4
2fxa_A	207	Protease production regulatory protein HPR; protea	91.07
4b8x_A	147	SCO5413, possible MARR-transcriptional regulator;	91.01
2k4b_A	99	Transcriptional regulator; DNA binding protein, wi	90.93
1okr_A	123	MECI, methicillin resistance regulatory protein ME	90.9
4aik_A	151	Transcriptional regulator SLYA; transcription, tra	90.86
1q1h_A	110	TFE, transcription factor E, TFE; TFIIE, transcrip	90.86
3r0a_A	123	Putative transcriptional regulator; structural gen	90.78
4fx0_A	148	Probable transcriptional repressor protein; helix-	90.73
2lkp_A	119	Transcriptional regulator, ARSR family; symmetric	90.58
1z7u_A	112	Hypothetical protein EF0647; winged-helix-turn-hel	90.27
2pn6_A	150	ST1022, 150AA long hypothetical transcriptional re	90.06
2cfx_A	144	HTH-type transcriptional regulator LRPC; transcrip	89.98
3i71_A	68	Ethanolamine utilization protein EUTK; helix-turn-	89.96
2vn2_A	128	DNAD, chromosome replication initiation protein; D	89.88
2p8t_A	200	Hypothetical protein PH0730; pyrococcus horikoshii	89.66
2w25_A	150	Probable transcriptional regulatory protein; trans	89.31
4g6q_A	182	Putative uncharacterized protein; structural genom	89.2
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	89.13
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	89.09
3hhh_A	116	Transcriptional regulator, PADR family; PF03551, s	88.81
3mag_A	307	VP39; methylated adenine, methyltransferase, RNA C	88.53
2p5v_A	162	Transcriptional regulator, LRP/ASNC family; NMB057	88.36
2qq9_A	226	Diphtheria toxin repressor; regulator, DTXR, helix	88.21
1fx7_A	230	Iron-dependent repressor IDER; DTXR, iron-dependen	87.87
3i4p_A	162	Transcriptional regulator, ASNC family; PSI, struc	87.63
2cg4_A	152	Regulatory protein ASNC; DNA binding, FFRP, LRP fa	87.33
3cta_A	230	Riboflavin kinase; structural genomics, transferas	87.17
2cyy_A	151	Putative HTH-type transcriptional regulator PH151;	87.1
2oo3_A	283	Protein involved in catabolism of external DNA; st	86.99
1sfu_A	75	34L protein; protein/Z-DNA complex, DNA binding pr	86.98
2dbb_A	151	Putative HTH-type transcriptional regulator PH006;	86.92
2e1c_A	171	Putative HTH-type transcriptional regulator PH151;	86.89
2v79_A	135	DNA replication protein DNAD; primosome, DNA-bindi	86.87
2p4w_A	202	Transcriptional regulatory protein ARSR family; ar	86.86
2ia0_A	171	Putative HTH-type transcriptional regulator PF086;	86.65
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	85.96
1uly_A	192	Hypothetical protein PH1932; helix-turn-helix, str	85.88
2fbk_A	181	Transcriptional regulator, MARR family; winged-hel	85.8
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	85.76
1i1g_A	141	Transcriptional regulator LRPA; helix-turn-helix,	85.68
2g9w_A	138	Conserved hypothetical protein; DNA-binding domain	85.63
1bia_A	321	BIRA bifunctional protein; transcription regulatio	85.58
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	85.26
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	85.19
2pjp_A	121	Selenocysteine-specific elongation factor; SELB, p	85.12
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	84.48
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	84.35
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	84.3
1cf7_A	76	Protein (transcription factor E2F-4); E2F, winged-	84.23
2esh_A	118	Conserved hypothetical protein TM0937; APC5794, st	84.03
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	83.98
1v4r_A	102	Transcriptional repressor; helix-turn-helix, winge	83.89
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	83.89
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	83.65
1sd4_A	126	Penicillinase repressor; BLAI, MECI, methicillin,	83.27
2b0l_A	102	GTP-sensing transcriptional pleiotropic repressor;	82.98
1j5y_A	187	Transcriptional regulator, biotin repressor famil;	82.76
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	82.19
1mzb_A	136	Ferric uptake regulation protein; ferric uptake re	82.03
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	81.79
3mwm_A	139	ZUR, putative metal uptake regulation protein; FUR	81.53
2o03_A	131	Probable zinc uptake regulation protein FURB; DNA-	81.31
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	80.65
3elk_A	117	Putative transcriptional regulator TA0346; structu	80.59
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	80.57
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	80.52
1hsj_A	487	Fusion protein consisting of staphylococcus access	80.48
2dk5_A	91	DNA-directed RNA polymerase III 39 kDa polypeptide	80.37
3c85_A	183	Putative glutathione-regulated potassium-efflux S	80.21
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	80.14

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=3.5e-47  Score=354.64  Aligned_cols=278  Identities=19%  Similarity=0.270  Sum_probs=243.1

Q ss_pred             chhhhhhhhhhcC-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCCC
Q 021707            4 NECRDGRKKVRLA-NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLS   82 (309)
Q Consensus         4 ~~~~~g~~~~~l~-~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~~   82 (309)
                      +.|++|+|+.+.. .+|+|++|||+++    |++++.++||||+|++.|++++..++ +++.|++|+.++.++...+|.+
T Consensus        27 aa~eLglfd~L~~~~~p~t~~eLA~~~----g~~~~~l~rlLr~L~~~gll~~~~~~-~~~~y~~t~~s~~~l~~~~~~~  101 (353)
T 4a6d_A           27 AACELGVFDLLAEAPGPLDVAAVAAGV----RASAHGTELLLDICVSLKLLKVETRG-GKAFYRNTELSSDYLTTVSPTS  101 (353)
T ss_dssp             HHHHHTHHHHHHHSSSCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHSTTSTTC
T ss_pred             HHHHcCHHHHHhcCCCCCCHHHHHHhh----CcCHHHHHHHHHHHHHCCCEEEeccC-ccceeeCCHHHHHHhhcCCchH
Confidence            4688999998754 4799999999999    99999999999999999999865421 1458999999987776667889


Q ss_pred             hHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCC---ChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCC
Q 021707           83 YAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGE---PAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFK  159 (309)
Q Consensus        83 ~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~  159 (309)
                      +++++.+.. +..++.|.+|++++++++ ++|...+|.   ++|+++.++|+....|.++|...+....+.+++.++ |+
T Consensus       102 ~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~  178 (353)
T 4a6d_A          102 QCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LS  178 (353)
T ss_dssp             CHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GG
T ss_pred             HHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cc
Confidence            999887754 456789999999999998 788888874   578888899999999999999988877888999997 99


Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC------CCCceEEeCCCCCC-CCCCceeeehhhhhcC
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS------IPGVTHIGGDMFNS-IPAANAIFMKWVLATW  232 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~------~~ri~~~~~d~~~~-~p~~D~i~~~~vlh~~  232 (309)
                      ...+|||||||+|.++.+++++||+++ ++++|+|++++.+++      .+||+++++|+|++ .|.+|+|+++++||+|
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~-~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~  257 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCK-ITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDW  257 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCE-EEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGS
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCce-eEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccC
Confidence            999999999999999999999999999 999999999987754      38999999999987 5567999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCccccee
Q 021707          233 TDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYF  295 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~~  295 (309)
                      +|++++++|++++++|+|||+++|+|.++++++..+   .....+|++||+  ..+|++||..
T Consensus       258 ~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl~ml~--~~~g~ert~~  315 (353)
T 4a6d_A          258 ADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSLNMLV--QTEGQERTPT  315 (353)
T ss_dssp             CHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHHHHHH--SSSCCCCCHH
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHHHHHH--hCCCcCCCHH
Confidence            999999999999999999999999999999876522   245789999999  5789999853

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=1.5e-45  Score=345.06  Aligned_cols=284  Identities=32%  Similarity=0.623  Sum_probs=249.4

Q ss_pred             chhhhhhhhhhcCC--CCCCHHHHHHHhCcCCCC--Ccc---hHHHHHHHHHcCCceeeeccc--cc--CceEEcChhch
Q 021707            4 NECRDGRKKVRLAN--TPLSVSQILTCILPSGGG--DAE---NLQCILRLLTSYGVFSEHREF--RG--ERKYSLTEIGK   72 (309)
Q Consensus         4 ~~~~~g~~~~~l~~--~~~t~~eLA~~~~~~~g~--~~~---~l~rlL~~L~~~gll~~~~~~--~~--~~~y~~t~~~~   72 (309)
                      +.|++|+|+.+...  +|+|++|||+++    |+  +++   .|+||||+|++.|+|++....  .+  ++.|++|+.++
T Consensus        39 ~a~~Lgifd~L~~~g~~~~t~~eLA~~~----g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~  114 (364)
T 3p9c_A           39 NAIELGLLEILVAAGGKSLTPTEVAAKL----PSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCK  114 (364)
T ss_dssp             HHHHHTHHHHHHHTTTCCBCHHHHHHTT----TCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGG
T ss_pred             HHHHCChHHHHhhcCCCCCCHHHHHHhc----CCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHH
Confidence            46899999988653  699999999999    98  887   999999999999999986310  00  36899999999


Q ss_pred             hhhcCCCCCChHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHH
Q 021707           73 SLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVL  152 (309)
Q Consensus        73 ~l~~~~~~~~~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~  152 (309)
                      .|+.+.++.++++++.+..++.++..|.+|++++++|. ++|+..+|.++|+|+.++|+..+.|.++|...+....+.++
T Consensus       115 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~  193 (364)
T 3p9c_A          115 FLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL  193 (364)
T ss_dssp             GSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99887667899998887767778899999999999988 89999999999999999999999999999988777777888


Q ss_pred             hhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcC
Q 021707          153 DSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATW  232 (309)
Q Consensus       153 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~  232 (309)
                      +.++.+++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.+||+++.+|+++++|.+|+|+++++||+|
T Consensus       194 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~  272 (364)
T 3p9c_A          194 ELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIK-GVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDW  272 (364)
T ss_dssp             HHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred             HhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCe-EEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccC
Confidence            8885477789999999999999999999999999 999999999999998899999999999988877999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          233 TDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      +++++.++|++++++|+|||+|+|.|.+.++.+...........+|+.|++ .+.+|++||.
T Consensus       273 ~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~~g~~rt~  333 (364)
T 3p9c_A          273 SDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLA-HNPGGRERYE  333 (364)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHH-HCSSCCCCBH
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHh-cccCCccCCH
Confidence            999999999999999999999999999998865432223344679999996 2578999985

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=2.6e-44  Score=336.99  Aligned_cols=284  Identities=32%  Similarity=0.596  Sum_probs=247.0

Q ss_pred             chhhhhhhhhhcCC----CCCCHHHHHHHhCcCCC-CCcc---hHHHHHHHHHcCCceeeecc----cccCceEEcChhc
Q 021707            4 NECRDGRKKVRLAN----TPLSVSQILTCILPSGG-GDAE---NLQCILRLLTSYGVFSEHRE----FRGERKYSLTEIG   71 (309)
Q Consensus         4 ~~~~~g~~~~~l~~----~~~t~~eLA~~~~~~~g-~~~~---~l~rlL~~L~~~gll~~~~~----~~~~~~y~~t~~~   71 (309)
                      +.+++|+|+.+...    +|+|++|||+++    | .+++   .|+||||+|++.|+|++...    +..++.|++|+.+
T Consensus        40 ~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~----~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s  115 (368)
T 3reo_A           40 AAIELDVLEIMAKSVPPSGYISPAEIAAQL----PTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVC  115 (368)
T ss_dssp             HHHHTTHHHHHHHHCCTTCCBCHHHHHTTS----SCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTH
T ss_pred             HHHHCCchhHHhhcCCCCCCcCHHHHHHhc----CcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHH
Confidence            46889999988652    369999999999    8 3554   99999999999999998620    0002689999999


Q ss_pred             hhhhcCCCCCChHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHH
Q 021707           72 KSLVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSV  151 (309)
Q Consensus        72 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~  151 (309)
                      +.|+.+.++.++++++.+..++.++..|.+|++++++|. ++|+..+|.++|+|+.++|+..+.|.++|...+....+.+
T Consensus       116 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~  194 (368)
T 3reo_A          116 KFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKI  194 (368)
T ss_dssp             HHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHH
Confidence            999887667899998887767778899999999999988 7999999999999999999999999999998877777788


Q ss_pred             HhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhc
Q 021707          152 LDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLAT  231 (309)
Q Consensus       152 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~  231 (309)
                      ++.++.+++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++|+++.+|+++++|.+|+|++++++|+
T Consensus       195 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~  273 (368)
T 3reo_A          195 LEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSIN-AINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHD  273 (368)
T ss_dssp             HTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGG
T ss_pred             HHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCE-EEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhc
Confidence            88885477789999999999999999999999999 99999999999999889999999999988887799999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      |+++++.++|++++++|+|||+|+|.|.+.++.+...........+|+.|+. .+.+|++||.
T Consensus       274 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~g~~rt~  335 (368)
T 3reo_A          274 WSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLA-YNPGGKERTE  335 (368)
T ss_dssp             BCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHH-HSSBCCCCCH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHh-hcCCCccCCH
Confidence            9999999999999999999999999999998865432233345689999997 2458999875

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=1.3e-42  Score=323.07  Aligned_cols=271  Identities=21%  Similarity=0.358  Sum_probs=240.8

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCCCh
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSY   83 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~   83 (309)
                      +.|++|+|+.+ .++|+|++|||+++    |++++.++||||+|++.|++++ +    ++.|++|+.++.|+.+ +|.++
T Consensus        41 ~a~~lglf~~l-~~g~~t~~elA~~~----g~~~~~l~rlLr~l~~~g~l~~-~----~~~y~~t~~s~~l~~~-~~~~~  109 (348)
T 3lst_A           41 AAAAVGVADHL-VDGPRTPAELAAAT----GTDADALRRVLRLLAVRDVVRE-S----DGRFALTDKGAALRSD-SPVPA  109 (348)
T ss_dssp             HHHHHTGGGGG-TTSCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEE-E----TTEEEECTTTGGGSTT-SSSCS
T ss_pred             HHHHcCchhHh-hCCCCCHHHHHHHh----CcCHHHHHHHHHHHHhCCCEEe-c----CCEEecCHHHHHHhcC-CCccH
Confidence            46889999976 56899999999999    9999999999999999999999 4    6899999999988665 57789


Q ss_pred             HHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCCcce
Q 021707           84 APYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKR  163 (309)
Q Consensus        84 ~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~  163 (309)
                      ++++.++..+..++.|.+|++++++|. ++|+..+|.++|+|+.++|+..+.|.++|...+....+.+++.++ +++..+
T Consensus       110 ~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~  187 (348)
T 3lst_A          110 RAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGT  187 (348)
T ss_dssp             HHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEE
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCce
Confidence            998877666667799999999999988 789999999999999999999999999999988888888999997 988999


Q ss_pred             EEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-----CCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHH
Q 021707          164 LVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-----IPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECK  238 (309)
Q Consensus       164 vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-----~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~  238 (309)
                      |||||||+|.++..+++++|+++ ++++|+|.++...+.     .+||+++.+|+++++|.+|+|++++++|+|+++++.
T Consensus       188 vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~  266 (348)
T 3lst_A          188 VADVGGGRGGFLLTVLREHPGLQ-GVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSV  266 (348)
T ss_dssp             EEEETCTTSHHHHHHHHHCTTEE-EEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred             EEEECCccCHHHHHHHHHCCCCE-EEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHH
Confidence            99999999999999999999999 999999988873322     268999999999778866999999999999999999


Q ss_pred             HHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          239 LIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       239 ~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      ++|++++++|+|||+|+|.|.+.++...+    .....+|+.|+.  ..+|++||.
T Consensus       267 ~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~--~~~~~~~t~  316 (348)
T 3lst_A          267 RILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLA--ARTGQERTA  316 (348)
T ss_dssp             HHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHH--TTSCCCCBH
T ss_pred             HHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhh--cCCCcCCCH
Confidence            99999999999999999999998886432    134678999998  477888874

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=8.2e-42  Score=320.13  Aligned_cols=271  Identities=21%  Similarity=0.355  Sum_probs=242.2

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCce-EEcChhchhhhcCCCCCC
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERK-YSLTEIGKSLVTDAEGLS   82 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~-y~~t~~~~~l~~~~~~~~   82 (309)
                      +.+++|+|+.+ .++|+|++|||+++    |++++.++|||++|++.|++++.+    ++. |++|+.++.|..+ ++.+
T Consensus        57 ~a~~lglf~~l-~~g~~t~~eLA~~~----g~~~~~l~rlLr~L~~~g~l~~~~----~~~~y~~t~~s~~L~~~-~~~~  126 (369)
T 3gwz_A           57 VAVELGVPELL-QEGPRTATALAEAT----GAHEQTLRRLLRLLATVGVFDDLG----HDDLFAQNALSAVLLPD-PASP  126 (369)
T ss_dssp             HHHHHTTGGGG-TTSCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSSEECS----STTEEECCHHHHTTSCC-TTCH
T ss_pred             HHHHCChhhhh-cCCCCCHHHHHHHH----CcCHHHHHHHHHHHHhCCCEEEeC----CCceEecCHHHHHHhcC-Cchh
Confidence            46889999977 47899999999999    999999999999999999999975    678 9999999988655 5778


Q ss_pred             hHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCCcc
Q 021707           83 YAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVK  162 (309)
Q Consensus        83 ~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~  162 (309)
                      +.+++.+...+..+..|.+|+++++++. ++|...+|.++|+|+.++|+..+.|.++|...+....+.+++.++ +++..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~  204 (369)
T 3gwz_A          127 VATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAA  204 (369)
T ss_dssp             HHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCS
T ss_pred             HHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCc
Confidence            8888887666556789999999999988 789888999999999999999999999999887777788899997 88889


Q ss_pred             eEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCCCCC-CceeeehhhhhcCCh
Q 021707          163 RLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNSIPA-ANAIFMKWVLATWTD  234 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~~p~-~D~i~~~~vlh~~~d  234 (309)
                      +|||||||+|.++..+++++|+++ ++++|+|.+++.+++       .+||+++.+|+++++|. +|+|++++++|+|++
T Consensus       205 ~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d  283 (369)
T 3gwz_A          205 TAVDIGGGRGSLMAAVLDAFPGLR-GTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDD  283 (369)
T ss_dssp             EEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCH
T ss_pred             EEEEeCCCccHHHHHHHHHCCCCe-EEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCH
Confidence            999999999999999999999999 999999988888764       37899999999987885 699999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          235 DECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       235 ~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      +++.++|++++++|+|||+++|.|.+.++... . .   ...+|+.|+.  ..+|++||.
T Consensus       284 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~-~-~---~~~~d~~~~~--~~~g~~~t~  336 (369)
T 3gwz_A          284 DDVVRILRRIATAMKPDSRLLVIDNLIDERPA-A-S---TLFVDLLLLV--LVGGAERSE  336 (369)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCC-H-H---HHHHHHHHHH--HHSCCCBCH
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC-C-c---hhHhhHHHHh--hcCCccCCH
Confidence            99999999999999999999999999988754 1 1   4679999998  478888875

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=3.5e-42  Score=317.88  Aligned_cols=269  Identities=20%  Similarity=0.284  Sum_probs=235.1

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCCCh
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSY   83 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~   83 (309)
                      +.+++|+|+.+ .++|.|++|||+++    |++++.++|||++|++.|++.+.+    ++.|.+|+.++.|..+ ++.++
T Consensus        24 ~a~~lglf~~l-~~g~~t~~elA~~~----~~~~~~l~rlLr~l~~~gl~~~~~----~~~y~~t~~s~~l~~~-~~~~~   93 (332)
T 3i53_A           24 VAATLRVADHI-AAGHRTAAEIASAA----GAHADSLDRLLRHLVAVGLFTRDG----QGVYGLTEFGEQLRDD-HAAGK   93 (332)
T ss_dssp             HHHHHTHHHHH-HTTCCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEECT----TSBEEECTTGGGGSTT-CTTCC
T ss_pred             HHHHcChHHHH-hcCCCCHHHHHHHH----CcCHHHHHHHHHHHHhCCcEEecC----CCeEEcCHhHHHHhcC-CchhH
Confidence            46889999977 46899999999999    999999999999999999999985    6899999999998665 56788


Q ss_pred             HHHHHHhcchhhh-hhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCCcc
Q 021707           84 APYVLQHHQDAFM-SAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVK  162 (309)
Q Consensus        84 ~~~i~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~  162 (309)
                      .+++.+......+ +.|.+|+++++++. ++|+..+|.++|+|+.++|+..+.|.++|...+....+.+++.++ +++..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~  171 (332)
T 3i53_A           94 RKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALG  171 (332)
T ss_dssp             HHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGGS
T ss_pred             HHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCCC
Confidence            8888765544455 78999999999988 789888999999999999999999999999876655666777776 88889


Q ss_pred             eEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCCCCC-CceeeehhhhhcCCh
Q 021707          163 RLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNSIPA-ANAIFMKWVLATWTD  234 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~~p~-~D~i~~~~vlh~~~d  234 (309)
                      +|||||||+|.++..+++++|+.+ ++++|+|.+++.+++       .+||+++.+|+++++|. +|+|++++++|+|++
T Consensus       172 ~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~  250 (332)
T 3i53_A          172 HVVDVGGGSGGLLSALLTAHEDLS-GTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDD  250 (332)
T ss_dssp             EEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCH
T ss_pred             EEEEeCCChhHHHHHHHHHCCCCe-EEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCH
Confidence            999999999999999999999999 999999999888764       27899999999987884 699999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          235 DECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       235 ~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      +++.++|++++++|+|||+++|.|.+.++. .+      ...+|+.|+.  ..+|++||.
T Consensus       251 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~------~~~~d~~~~~--~~~~~~~t~  301 (332)
T 3i53_A          251 LSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HA------GTGMDLRMLT--YFGGKERSL  301 (332)
T ss_dssp             HHHHHHHHHHHHHHTTTCEEEEEECCCC----C------CHHHHHHHHH--HHSCCCCCH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeecCCCC-Cc------cHHHHHHHHh--hCCCCCCCH
Confidence            999999999999999999999999998876 21      2478999998  478888875

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=100.00  E-value=5.2e-41  Score=314.88  Aligned_cols=282  Identities=34%  Similarity=0.577  Sum_probs=229.6

Q ss_pred             chhhhhhhhhhcCCC-C---CCHHHHHHHhCcCCCC------CcchHHHHHHHHHcCCceeee----cccccCceEEcCh
Q 021707            4 NECRDGRKKVRLANT-P---LSVSQILTCILPSGGG------DAENLQCILRLLTSYGVFSEH----REFRGERKYSLTE   69 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~-~---~t~~eLA~~~~~~~g~------~~~~l~rlL~~L~~~gll~~~----~~~~~~~~y~~t~   69 (309)
                      +.+++|+|+.+-..+ |   +|++|||+++    |+      +++.++||||+|++.|+|++.    +.+..++.|++|+
T Consensus        43 ~a~~lgif~~L~~~g~pg~~~t~~eLA~~~----~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~  118 (372)
T 1fp1_D           43 AAIDLNLFEIIAKATPPGAFMSPSEIASKL----PASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSM  118 (372)
T ss_dssp             HHHHTTHHHHHHTCSSTTCCBCHHHHHTTS----CGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECT
T ss_pred             HHHHCChHHHHHhcCCCCCCcCHHHHHHhc----CCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCH
Confidence            357899999886655 7   9999999999    98      678999999999999999987    2000025899999


Q ss_pred             hchhhhcCCCC-CChHHHHHHhcchhhhhhhhhHHHHhcCC-CCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCccc
Q 021707           70 IGKSLVTDAEG-LSYAPYVLQHHQDAFMSAWPLVHEAVLDP-TIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPF  147 (309)
Q Consensus        70 ~~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~~~L~~~l~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~  147 (309)
                      .++.|+.+ +| .++++++.+..++.+++.|.+|+++++++ . ++|+..+|.++|+|+.++|+..+.|.++|...+...
T Consensus       119 ~s~~L~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~  196 (372)
T 1fp1_D          119 VGKYLVPD-ESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDI-DLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATE  196 (372)
T ss_dssp             TGGGGSTT-CTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCC-CCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCC-ChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHH
Confidence            99988765 45 67889888776667788999999999998 6 789888999999999999999999999998877766


Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCCCCceeeehh
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKW  227 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~  227 (309)
                      .+.+++.++.+++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++++++.+|+++++|.+|+|++++
T Consensus       197 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~  275 (372)
T 1fp1_D          197 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIK-GINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKA  275 (372)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEES
T ss_pred             HHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCe-EEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEec
Confidence            778888885477788999999999999999999999999 9999999999999988899999999998877789999999


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      +||+|+++++.++|++++++|+|||+++|.|.+.++.......++....+|+.|+.  ..+|++||.
T Consensus       276 ~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~t~  340 (372)
T 1fp1_D          276 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI--TVGGRERTE  340 (372)
T ss_dssp             SGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH--HHSCCCEEH
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHh--ccCCccCCH
Confidence            99999999999999999999999999999999988765422222245689999997  456887764

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=100.00  E-value=5.9e-41  Score=312.90  Aligned_cols=282  Identities=26%  Similarity=0.412  Sum_probs=240.0

Q ss_pred             chhhhhhhhhhcCC-CCCCHHHHHHHhCcCCCC---CcchHHHHHHHHHcCCceeee-----c-ccccCceEEcChhchh
Q 021707            4 NECRDGRKKVRLAN-TPLSVSQILTCILPSGGG---DAENLQCILRLLTSYGVFSEH-----R-EFRGERKYSLTEIGKS   73 (309)
Q Consensus         4 ~~~~~g~~~~~l~~-~~~t~~eLA~~~~~~~g~---~~~~l~rlL~~L~~~gll~~~-----~-~~~~~~~y~~t~~~~~   73 (309)
                      +.+++|+|+.+-.. +|+|++|||+++    |+   +++.++||||+|++.|+|++.     + .+..++.|++|+.++.
T Consensus        29 ~a~~lgif~~L~~~~~~~t~~eLA~~~----g~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~  104 (358)
T 1zg3_A           29 SAMELGIADAIHNHGKPMTLSELASSL----KLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKL  104 (358)
T ss_dssp             HHHHHTHHHHHHHHTSCEEHHHHHHHT----TCCTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHT
T ss_pred             HHHHCChHhHHhhcCCCcCHHHHHHhc----CCCCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHH
Confidence            35788999987553 599999999999    99   578999999999999999987     1 1000368999999998


Q ss_pred             hhcCCCCCChHHHHHHhcchhhhhhhhhHHHHhcCCC-CChhhhhhCCChhhhhhcCchHHH--HHHHHhhcCCcccHHH
Q 021707           74 LVTDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVLDPT-IEPFVKVHGEPAYSYYGKMPEMNG--LMRRAISGVSVPFMTS  150 (309)
Q Consensus        74 l~~~~~~~~~~~~i~~~~~~~~~~~~~~L~~~l~~~~-~~~~~~~~g~~~~~~~~~~~~~~~--~f~~~m~~~~~~~~~~  150 (309)
                      |+.+ +|.++++++.+..++.+++.|.+|+++++++. .++|+.++|.++|+|+.++|+..+  .|+++|...+.... .
T Consensus       105 l~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~  182 (358)
T 1zg3_A          105 LISG-KPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-L  182 (358)
T ss_dssp             TCTT-STTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-H
T ss_pred             HhCC-CCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-H
Confidence            8866 56789999888766777899999999999983 278998899999999999999999  99999998776555 6


Q ss_pred             HHhhcC-CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhh
Q 021707          151 VLDSYN-GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVL  229 (309)
Q Consensus       151 ~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vl  229 (309)
                      +++.++ .+++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++|+++.+|+++++|.+|+|+++++|
T Consensus       183 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vl  261 (358)
T 1zg3_A          183 VLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLK-CTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVL  261 (358)
T ss_dssp             HHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSE-EEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCG
T ss_pred             HHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCe-EEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcccc
Confidence            777772 266778999999999999999999999999 999999999999988788999999999988878999999999


Q ss_pred             hcCChhHHHHHHHHHHHhcCC---CcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          230 ATWTDDECKLIMENCYKALLA---GGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      |+|+++++.++|++++++|+|   ||+++|.|.+.++.+..+........+|+.|+.  ..+|++||.
T Consensus       262 h~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~g~~~t~  327 (358)
T 1zg3_A          262 HDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLT--MFLGKERTK  327 (358)
T ss_dssp             GGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHH--HHSCCCEEH
T ss_pred             cCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhc--cCCCCCCCH
Confidence            999999999999999999999   999999999988765421011245689999998  467888764

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.4e-40  Score=307.07  Aligned_cols=268  Identities=22%  Similarity=0.362  Sum_probs=236.7

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCCCh
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSY   83 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~   83 (309)
                      +.+++|+|+.+ .++|.|++|||+++    |++++.++|||++|++.|++++.+    ++.|++|+.++.|. + +|.++
T Consensus        27 ~~~~lgi~~~l-~~~~~t~~ela~~~----~~~~~~l~r~Lr~L~~~g~l~~~~----~~~y~~t~~s~~l~-~-~~~~~   95 (334)
T 2ip2_A           27 VATRLGLADLI-ESGIDSDETLAAAV----GSDAERIHRLMRLLVAFEIFQGDT----RDGYANTPTSHLLR-D-VEGSF   95 (334)
T ss_dssp             HHHHTTHHHHH-HTTCCSHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHTTS-S-STTCS
T ss_pred             HHHHcCcHHHH-hCCCCCHHHHHHHh----CcCHHHHHHHHHHHHhCCceEecC----CCeEecCHHHHHHh-C-CCccH
Confidence            35789999987 46899999999999    999999999999999999999885    68999999999888 4 57789


Q ss_pred             HHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCCcce
Q 021707           84 APYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKR  163 (309)
Q Consensus        84 ~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~  163 (309)
                      ++++.+..++.. +.|.+|+++++++. ++|+..+|.++|+|+.++|+..+.|.++| ..+....+.+++.++ +++ .+
T Consensus        96 ~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~  170 (334)
T 2ip2_A           96 RDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RS  170 (334)
T ss_dssp             HHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CE
T ss_pred             HHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CE
Confidence            998887766545 89999999999988 79988899999999999999999999999 777777788888886 877 99


Q ss_pred             EEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCCCCC-CceeeehhhhhcCChh
Q 021707          164 LVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNSIPA-ANAIFMKWVLATWTDD  235 (309)
Q Consensus       164 vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~~p~-~D~i~~~~vlh~~~d~  235 (309)
                      |||||||+|.++..+++++|+.+ ++++|+|.+++.+++.       +||+++.+|+++++|. +|+|++++++|+|+++
T Consensus       171 vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~  249 (334)
T 2ip2_A          171 FVDVGGGSGELTKAILQAEPSAR-GVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEA  249 (334)
T ss_dssp             EEEETCTTCHHHHHHHHHCTTCE-EEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHH
T ss_pred             EEEeCCCchHHHHHHHHHCCCCE-EEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHH
Confidence            99999999999999999999999 9999998888777642       6899999999988776 5999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          236 ECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       236 ~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      ++.++|++++++|+|||+++|.|.+.++++.+    .....+|+.|+.  ..+|++||.
T Consensus       250 ~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~t~  302 (334)
T 2ip2_A          250 ASLRLLGNCREAMAGDGRVVVIERTISASEPS----PMSVLWDVHLFM--ACAGRHRTT  302 (334)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEEEECCBCSSSCC----HHHHHHHHHHHH--HHSCCCCBH
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhHHhhhHhHh--hCCCcCCCH
Confidence            99999999999999999999999998876432    235678999998  457888873

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=100.00  E-value=2.3e-40  Score=308.26  Aligned_cols=277  Identities=25%  Similarity=0.401  Sum_probs=238.2

Q ss_pred             chhhhhhhhhhcCC-CCCCHHHHHHHhCcCCCCC---cchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCC
Q 021707            4 NECRDGRKKVRLAN-TPLSVSQILTCILPSGGGD---AENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAE   79 (309)
Q Consensus         4 ~~~~~g~~~~~l~~-~~~t~~eLA~~~~~~~g~~---~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~   79 (309)
                      +.+++|+|+.+-.. +|.|++|||+++    |++   ++.++||||+|++.|+|++...  +++.|++|+.++.|+.+ +
T Consensus        35 ~a~~lgif~~L~~~~~~~t~~ela~~~----~~~~~~~~~l~rlLr~L~~~gll~~~~~--~~~~y~~t~~s~~L~~~-~  107 (352)
T 1fp2_A           35 WAVEMNIPNIIQNHGKPISLSNLVSIL----QVPSSKIGNVRRLMRYLAHNGFFEIITK--EEESYALTVASELLVRG-S  107 (352)
T ss_dssp             HHHHTTHHHHHHHHTSCEEHHHHHHHH----TCCGGGHHHHHHHHHHHHHTTSEEEEES--SSEEEEECHHHHTTSTT-S
T ss_pred             HHHHCChhhhhhhcCCCccHHHHHHHh----CcCCCChHHHHHHHHHHHhCCeEEEecC--CCCeEeCCHHHHHHhCC-C
Confidence            35789999987553 599999999999    995   7899999999999999998720  15799999999988865 5


Q ss_pred             CCChHHHHHHhcchhhhhhhhhHHHHhc-CCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhc--C
Q 021707           80 GLSYAPYVLQHHQDAFMSAWPLVHEAVL-DPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSY--N  156 (309)
Q Consensus        80 ~~~~~~~i~~~~~~~~~~~~~~L~~~l~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~--~  156 (309)
                      |.++++++.+..++.+++.|.+|+++++ +|. ++|+.++|.++|+|+.++|+..+.|.++|...+....+. ++.+  +
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~  185 (352)
T 1fp2_A          108 DLCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV  185 (352)
T ss_dssp             SSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH
T ss_pred             CccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc
Confidence            6789998887766667889999999999 776 899999999999999999999999999999887766666 7777  4


Q ss_pred             CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhH
Q 021707          157 GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDE  236 (309)
Q Consensus       157 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~  236 (309)
                       +++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++++++.+|+++++|.+|+|++++++|+|++++
T Consensus       186 -~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~  263 (352)
T 1fp2_A          186 -FDGLESIVDVGGGTGTTAKIICETFPKLK-CIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKD  263 (352)
T ss_dssp             -HTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHH
T ss_pred             -cccCceEEEeCCCccHHHHHHHHHCCCCe-EEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHH
Confidence             67778999999999999999999999999 9999999999999888889999999998888789999999999999999


Q ss_pred             HHHHHHHHHHhcCC---CcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          237 CKLIMENCYKALLA---GGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       237 ~~~iL~~~~~aL~p---gG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      +.++|++++++|+|   ||+++|.|...++.+...........+|+.|+. .  +|++||.
T Consensus       264 ~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~--~g~~~t~  321 (352)
T 1fp2_A          264 CLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L--NGKERNE  321 (352)
T ss_dssp             HHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G--TCCCEEH
T ss_pred             HHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c--cCCCCCH
Confidence            99999999999999   999999999988765321111245678999987 3  3777764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=100.00  E-value=2.9e-38  Score=295.44  Aligned_cols=270  Identities=17%  Similarity=0.177  Sum_probs=215.8

Q ss_pred             chhhhhhhhhhcC-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCCC
Q 021707            4 NECRDGRKKVRLA-NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLS   82 (309)
Q Consensus         4 ~~~~~g~~~~~l~-~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~~   82 (309)
                      +.+++|+|+.+-. ++|+|++|||+++    |++++.++|||++|++.|+|++.     ++.|++|+.++.|+.+. +  
T Consensus        34 ~a~~lgifd~L~~~~~~~t~~eLA~~~----g~~~~~l~rlLr~l~~~g~l~~~-----~~~y~~t~~s~~L~~~~-~--  101 (363)
T 3dp7_A           34 LMLKFGIFQLLSGKREGYTLQEISGRT----GLTRYAAQVLLEASLTIGTILLE-----EDRYVLAKAGWFLLNDK-M--  101 (363)
T ss_dssp             HHHHTTHHHHHHTCTTCBCHHHHHHHH----TCCHHHHHHHHHHHHHHTSEEEE-----TTEEEECHHHHHHHHCH-H--
T ss_pred             HHHHhCHHHHHHhcCCCCCHHHHHHHh----CcCHHHHHHHHHHHhhCCCeEec-----CCEEecccchHHhhCCC-c--
Confidence            4588999998765 5899999999999    99999999999999999999886     58999999998888753 2  


Q ss_pred             hHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhC--CChhhhhhcCchHHHH----HHHHhhcCCcccHHHHHhhcC
Q 021707           83 YAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHG--EPAYSYYGKMPEMNGL----MRRAISGVSVPFMTSVLDSYN  156 (309)
Q Consensus        83 ~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~----f~~~m~~~~~~~~~~~~~~~~  156 (309)
                      ...++.+ ..+..++.|.+|+++++++. +++...+|  .++|+++.++|+..+.    |..+|....   ...+++.+.
T Consensus       102 ~~~~~~~-~~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~---~~~~l~~~~  176 (363)
T 3dp7_A          102 ARVNMEF-NHDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQS---FGKALEIVF  176 (363)
T ss_dssp             HHHHHHH-HHHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCC---CHHHHHHHG
T ss_pred             ccchhee-ecHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhh---HHHHHHHhc
Confidence            2223333 33457789999999999988 67777887  6899999999987763    555555433   234555543


Q ss_pred             CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCC---CCC-Cceeee
Q 021707          157 GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNS---IPA-ANAIFM  225 (309)
Q Consensus       157 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~---~p~-~D~i~~  225 (309)
                       ..+..+|||||||+|.++..+++++|+++ ++++|+|.+++.++++       +||+++.+|++++   +|+ +|+|++
T Consensus       177 -~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~  254 (363)
T 3dp7_A          177 -SHHPKRLLDIGGNTGKWATQCVQYNKEVE-VTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWM  254 (363)
T ss_dssp             -GGCCSEEEEESCTTCHHHHHHHHHSTTCE-EEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEE
T ss_pred             -ccCCCEEEEeCCCcCHHHHHHHHhCCCCE-EEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEE
Confidence             35678999999999999999999999999 9999999998887642       5899999999985   564 599999


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCCchh-hhhhhhcccHhhhcccccCCcccce
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQ-RTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~-~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      +++||+|+++++.++|++++++|+|||+|+|.|.+.++.+.... ........++.|+.  ..+|++||.
T Consensus       255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~t~  322 (363)
T 3dp7_A          255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMA--NGNSKMFHS  322 (363)
T ss_dssp             ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSS--CSSCCSCCH
T ss_pred             echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhh--CCCCcccCH
Confidence            99999999999999999999999999999999999988754211 11112334555555  567787764

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=100.00  E-value=2.1e-38  Score=296.80  Aligned_cols=272  Identities=18%  Similarity=0.241  Sum_probs=232.0

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCc--eEEcChhchhhhcCCCCC
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGER--KYSLTEIGKSLVTDAEGL   81 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~--~y~~t~~~~~l~~~~~~~   81 (309)
                      +.+++|+|+.+ .++|.|++|||+++    |++++.++|||++|++.|++++.+    ++  .|++|+.++.|..+ ++.
T Consensus        35 ~~~~l~i~~~l-~~~~~t~~eLA~~~----g~~~~~l~r~Lr~L~~~Gll~~~~----~~~~~y~~t~~s~~l~~~-~~~  104 (374)
T 1qzz_A           35 VAATLRLVDHL-LAGADTLAGLADRT----DTHPQALSRLVRHLTVVGVLEGGE----KQGRPLRPTRLGMLLADG-HPA  104 (374)
T ss_dssp             HHHHTTHHHHH-HTTCCSHHHHHHHH----TCCHHHHHHHHHHHHHTTSEECCC----C-CCCCEECTTGGGGSTT-CTT
T ss_pred             HHHHcChHHHH-hCCCCCHHHHHHHh----CcCHHHHHHHHHHHhhCCCEEEeC----CCCeEEEEChHHHhhcCC-Ccc
Confidence            35789999988 67899999999999    999999999999999999999864    56  99999999888866 577


Q ss_pred             ChHHHHHHhcchhhh-hhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCC
Q 021707           82 SYAPYVLQHHQDAFM-SAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKG  160 (309)
Q Consensus        82 ~~~~~i~~~~~~~~~-~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  160 (309)
                      ++++++.+...+..+ ..|.+|+++++++. ++|...+|.++|+++..+|+..+.|.++|........+.+++.++ +.+
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~  182 (374)
T 1qzz_A          105 QQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSA  182 (374)
T ss_dssp             CHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTT
T ss_pred             cHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCC
Confidence            888887766544456 89999999999988 688888899999999999999999999999888777788999886 888


Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCCCCC-CceeeehhhhhcC
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNSIPA-ANAIFMKWVLATW  232 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~~p~-~D~i~~~~vlh~~  232 (309)
                      ..+|||||||+|.++..+++.+|+.+ ++++|++.+++.++++       ++|+++.+|+++++|. +|+|++++++|+|
T Consensus       183 ~~~vlDvG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~  261 (374)
T 1qzz_A          183 VRHVLDVGGGNGGMLAAIALRAPHLR-GTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNW  261 (374)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGS
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCE-EEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCC
Confidence            89999999999999999999999999 9999998888877642       4899999999987776 5999999999999


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEEEecc--ccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          233 TDDECKLIMENCYKALLAGGKLIACEP--VLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l~i~e~--~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      +++++.++|++++++|+|||+++|.|.  +.+++.. .   .....+|+.|+.  ..+|+.||.
T Consensus       262 ~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~-~---~~~~~~~~~~~~--~~~~~~~~~  319 (374)
T 1qzz_A          262 SDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD-R---FFSTLLDLRMLT--FMGGRVRTR  319 (374)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEECCH--------H---HHHHHHHHHHHH--HHSCCCCCH
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC-c---chhhhcchHHHH--hCCCcCCCH
Confidence            999999999999999999999999999  8766532 1   235678999887  356776654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=100.00  E-value=6.5e-38  Score=292.14  Aligned_cols=271  Identities=19%  Similarity=0.307  Sum_probs=235.8

Q ss_pred             hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCCChH
Q 021707            5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYA   84 (309)
Q Consensus         5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~   84 (309)
                      .+++|+|+.+ .++|.|++|||+++    |++++.+.|+|++|++.|+|.+.+    +++|++|+.++.|+.+ +|.+++
T Consensus        39 ~~~l~i~~~l-~~~~~t~~ela~~~----~~~~~~l~r~L~~L~~~g~~~~~~----~g~y~~t~~s~~l~~~-~~~~~~  108 (360)
T 1tw3_A           39 AATLRLVDHI-LAGARTVKALAART----DTRPEALLRLIRHLVAIGLLEEDA----PGEFVPTEVGELLADD-HPAAQR  108 (360)
T ss_dssp             HHHTTHHHHH-HTTCCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEE----TTEEEECTTGGGGSTT-STTCHH
T ss_pred             HHHhCHHHHH-hCCCCCHHHHHHHh----CcCHHHHHHHHHHHHHCCCEEecC----CCeEEeCHHHHHHhcC-CchhHH
Confidence            5789999987 57899999999999    999999999999999999999875    6899999999888876 577888


Q ss_pred             HHHHHhcchh-hhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCCcce
Q 021707           85 PYVLQHHQDA-FMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKR  163 (309)
Q Consensus        85 ~~i~~~~~~~-~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~  163 (309)
                      +++.+...+. .+..|.+|.+.++++. ++|+..+|.++|+++..+|+....|...|...+....+.+++.++ +.+..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~  186 (360)
T 1tw3_A          109 AWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRH  186 (360)
T ss_dssp             HHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSE
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcE
Confidence            8776654443 5689999999999987 688888899999999889999999999999888877888899986 888899


Q ss_pred             EEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCCCCC-CceeeehhhhhcCChh
Q 021707          164 LVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNSIPA-ANAIFMKWVLATWTDD  235 (309)
Q Consensus       164 vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~~p~-~D~i~~~~vlh~~~d~  235 (309)
                      |||||||+|.++..+++++|+++ ++++|++.+++.++++       ++++++.+|+++++|. +|+|++.+++|+|+++
T Consensus       187 vLDvG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~  265 (360)
T 1tw3_A          187 VLDVGGGKGGFAAAIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDH  265 (360)
T ss_dssp             EEEETCTTSHHHHHHHHHCTTCE-EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHH
T ss_pred             EEEeCCcCcHHHHHHHHhCCCCE-EEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCHH
Confidence            99999999999999999999999 9999998888877642       4899999999987777 5999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEeccc-cCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          236 ECKLIMENCYKALLAGGKLIACEPV-LLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       236 ~~~~iL~~~~~aL~pgG~l~i~e~~-~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      ++.++|++++++|+|||+++|.|.. .++....    .....+|+.|+.  ..+|+.||.
T Consensus       266 ~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~t~  319 (360)
T 1tw3_A          266 DAVRILTRCAEALEPGGRILIHERDDLHENSFN----EQFTELDLRMLV--FLGGALRTR  319 (360)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS----HHHHHHHHHHHH--HHSCCCCBH
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc----chhhhccHHHhh--hcCCcCCCH
Confidence            9999999999999999999999998 7665331    134578999987  356777764

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=9.2e-37  Score=283.53  Aligned_cols=265  Identities=15%  Similarity=0.235  Sum_probs=220.0

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCCCh
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSY   83 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~   83 (309)
                      +.+++|+|+.+ .+ |+|++|||+++    |++++.++||||+|++.|++++.     ++.|++|+.++.++..++|.++
T Consensus        43 ~a~~lgif~~l-~~-~~t~~elA~~~----~~~~~~l~rlLr~L~~~gll~~~-----~~~y~~t~~s~~~l~~~~~~~~  111 (352)
T 3mcz_A           43 YAVADKLFDLT-QT-GRTPAEVAASF----GMVEGKAAILLHALAALGLLTKE-----GDAFRNTALTERYLTTTSADYI  111 (352)
T ss_dssp             HHHHTTHHHHT-TS-CBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHHSTTCTTCC
T ss_pred             HHHHCChHHHh-CC-CCCHHHHHHHh----CcChHHHHHHHHHHHHCCCeEec-----CCeeecCHHHHhhccCCChhhH
Confidence            46789999977 44 99999999999    99999999999999999999998     4689999999876666678888


Q ss_pred             HHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCC-cc
Q 021707           84 APYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKG-VK  162 (309)
Q Consensus        84 ~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~-~~  162 (309)
                      +.++.+.  ...++.|.+|++++++|.+.+|+..      .+++.+|+..+.|.++|...... ...+++.++ +.+ ..
T Consensus       112 ~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~  181 (352)
T 3mcz_A          112 GPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARAR  181 (352)
T ss_dssp             HHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCC
T ss_pred             HHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCC
Confidence            8877654  3467899999999999875444322      23456888999999999873222 236888887 777 88


Q ss_pred             eEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCC---CCC-Cceeeehhhhhc
Q 021707          163 RLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNS---IPA-ANAIFMKWVLAT  231 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~---~p~-~D~i~~~~vlh~  231 (309)
                      +|||||||+|.++..+++++|+.+ ++++|+|.+++.+++.       +|++++.+|+++.   .|. +|+|++++++|+
T Consensus       182 ~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~  260 (352)
T 3mcz_A          182 TVIDLAGGHGTYLAQVLRRHPQLT-GQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHY  260 (352)
T ss_dssp             EEEEETCTTCHHHHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGG
T ss_pred             EEEEeCCCcCHHHHHHHHhCCCCe-EEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccccc
Confidence            999999999999999999999999 9999998888776542       5899999999986   444 499999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      |+++++.++|++++++|+|||+++|.|.+.++++...   .....+|+.|+. ...+|++||.
T Consensus       261 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~t~  319 (352)
T 3mcz_A          261 FDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHMMV-NTNHGELHPT  319 (352)
T ss_dssp             SCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHHH-HSTTCCCCCH
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHHh-hCCCCCcCCH
Confidence            9999999999999999999999999999998875422   235689999998 3457888875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=100.00  E-value=5.3e-36  Score=276.17  Aligned_cols=267  Identities=12%  Similarity=0.069  Sum_probs=226.2

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc-hhhhcCCCCCC
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG-KSLVTDAEGLS   82 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~-~~l~~~~~~~~   82 (309)
                      +.+++|+|+.+- ++|.|++|||+++    |++++.++|||++|++.|++++.     ++.|++|+.+ ..+..+ ++.+
T Consensus        25 ~~~~l~i~~~l~-~~~~t~~ela~~~----~~~~~~l~r~L~~L~~~g~l~~~-----~~~y~~t~~~~~~l~~~-~~~~   93 (335)
T 2r3s_A           25 AAVELNVFTAIS-QGIESSQSLAQKC----QTSERGMRMLCDYLVIIGFMTKQ-----AEGYRLTSDSAMFLDRQ-SKFY   93 (335)
T ss_dssp             HHHHTTHHHHHT-TSEECHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHTCTT-STTC
T ss_pred             HHHHcChHHHHh-cCCCCHHHHHHHh----CCCchHHHHHHHHHHhcCCeEec-----CCEEecCHHHHHHhccC-CcHH
Confidence            357899999774 5899999999999    99999999999999999999875     6899999999 455554 5778


Q ss_pred             hHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCC--CC
Q 021707           83 YAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGF--KG  160 (309)
Q Consensus        83 ~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~  160 (309)
                      +++++.+..++..++.|.+|+++++++. ++|+     + |+++.++++..+.|.+.|..........+++.++ +  .+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  165 (335)
T 2r3s_A           94 VGDAIEFLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKIE  165 (335)
T ss_dssp             CGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--CC
T ss_pred             HHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccCC
Confidence            8888877755567789999999999887 4553     3 7777888999999999998877777778888886 7  77


Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCC-CCC-Cceeeehhhhhc
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNS-IPA-ANAIFMKWVLAT  231 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~  231 (309)
                      ..+|||||||+|.++..+++.+|+.+ ++++|++.+++.+++.       +|++++.+|+++. .|. .|+|++++++|+
T Consensus       166 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~  244 (335)
T 2r3s_A          166 PLKVLDISASHGLFGIAVAQHNPNAE-IFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHH  244 (335)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGG
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhcc
Confidence            88999999999999999999999999 9999999888877652       5799999999874 665 599999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      |+++++.++|++++++|+|||+++|.|...++.+...   .....+|+.|+.. ..+|+.||.
T Consensus       245 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~t~  303 (335)
T 2r3s_A          245 FDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVMLAT-TPNGDAYTF  303 (335)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHHHH-SSSCCCCCH
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHHee-CCCCCcCCH
Confidence            9999999999999999999999999999988764321   2356789999983 346777764

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=100.00  E-value=3.7e-35  Score=273.74  Aligned_cols=237  Identities=18%  Similarity=0.263  Sum_probs=206.4

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCC---
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEG---   80 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~---   80 (309)
                      +.+++|+|+.+. ++|.|++|||+++    |++++.++|||++|++.|+|++.     ++.|++|+.+..++..++|   
T Consensus        50 ~a~~lgif~~L~-~~~~t~~eLA~~~----g~~~~~l~rlLr~L~~~gll~~~-----~~~y~~t~~~~~~l~~~~~~~~  119 (359)
T 1x19_A           50 AAIELDLFSHMA-EGPKDLATLAADT----GSVPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADYMFSPTPKEPN  119 (359)
T ss_dssp             HHHHHTHHHHHT-TCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHSSSSCSBTT
T ss_pred             HHHHcCcHHHHc-CCCCCHHHHHHHh----CcChHHHHHHHHHHHhCCCeEee-----CCeEecCHHHHHHhcCCCCCcc
Confidence            357899999774 5899999999999    99999999999999999999998     4699999976544444456   


Q ss_pred             CChHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCch---HHHHHHHHhhcCCc-ccHHHHHhhcC
Q 021707           81 LSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPE---MNGLMRRAISGVSV-PFMTSVLDSYN  156 (309)
Q Consensus        81 ~~~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~  156 (309)
                      .++++++.+. ....++.|.+|+++++++. +          |+|+.++|+   ..+.|...|...+. ...+.+++.++
T Consensus       120 ~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~-~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~  187 (359)
T 1x19_A          120 LHQTPVAKAM-AFLADDFYMGLSQAVRGQK-N----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK  187 (359)
T ss_dssp             BCCHHHHHHH-HHHHHHTGGGHHHHHTTSC-C----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC
T ss_pred             ccHHHHHHHH-HHHHHHHHHHHHHHHhcCC-C----------CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC
Confidence            6888887765 3457789999999999876 2          556667888   88999999999888 77788999987


Q ss_pred             CCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCC-CCCCceeeehhh
Q 021707          157 GFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNS-IPAANAIFMKWV  228 (309)
Q Consensus       157 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~-~p~~D~i~~~~v  228 (309)
                       +.+..+|||||||+|.++..+++++|+.+ ++++|+|.+++.+++       .+|++++.+|+++. .+.+|+|++.++
T Consensus       188 -~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~v  265 (359)
T 1x19_A          188 -LDGVKKMIDVGGGIGDISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRI  265 (359)
T ss_dssp             -CTTCCEEEEESCTTCHHHHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESC
T ss_pred             -CCCCCEEEEECCcccHHHHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEech
Confidence             88889999999999999999999999999 999999888887764       25799999999985 555699999999


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +|+|+++++.++|++++++|+|||+++|.|...++.
T Consensus       266 lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~  301 (359)
T 1x19_A          266 LYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP  301 (359)
T ss_dssp             GGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT
T ss_pred             hccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC
Confidence            999999999999999999999999999999998775

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.70  E-value=3.5e-17  Score=145.85  Aligned_cols=107  Identities=21%  Similarity=0.313  Sum_probs=93.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhc--CCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CCCCceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKH--HFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IPAANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p~~D~i~~~  226 (309)
                      .+.+.+|||||||+|.++..+++++  |+++ ++++|. +.+++.|++       ..+|+++++|+.+. .+.+|+|++.
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~-v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~  146 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN  146 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCE-EEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceee
Confidence            4567899999999999999999986  5778 999998 788887764       26899999999774 5557999999


Q ss_pred             hhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          227 WVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      ++||++++++..++|++++++|+|||++++.|...++++
T Consensus       147 ~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~  185 (261)
T 4gek_A          147 FTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDA  185 (261)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSH
T ss_pred             eeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCH
Confidence            999999998888999999999999999999999887763

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.64  E-value=1.7e-15  Score=141.61  Aligned_cols=219  Identities=12%  Similarity=0.017  Sum_probs=144.1

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcCCCCCChHH
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTDAEGLSYAP   85 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~~~~~~~~~   85 (309)
                      +..+++..+  .+|.|++|||+.+    |++++.+++||+.|.+.|+++..     ++ |++|+.++.++...++....+
T Consensus        44 ~~~~ll~~L--~~~~t~~eLa~~~----g~~~~~v~~~L~~l~~~gll~~~-----~~-~~lt~~~~~~l~~~~~~~~~~  111 (373)
T 2qm3_A           44 SVENVLSAV--LASDDIWRIVDLS----EEPLPLVVAILESLNELGYVTFE-----DG-VKLTEKGEELVAEYGIGKRYD  111 (373)
T ss_dssp             HHHHHHHHH--HHCSCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEECS-----SS-SEECHHHHHHHHHHTCCCCCC
T ss_pred             HHHHHHHHh--cCCCCHHHHHHHh----CCChHHHHHHHHHHhhCCcEEEC-----CC-EEECHHHHHHHHhcCcccccc
Confidence            445888877  6799999999999    99999999999999999999875     34 999998765543322211111


Q ss_pred             HHHH--h----cchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCC
Q 021707           86 YVLQ--H----HQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFK  159 (309)
Q Consensus        86 ~i~~--~----~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~  159 (309)
                      .+..  .    ....+...|..+.+.++... .+. ..+...       .+...........         .. ... ..
T Consensus       112 ~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~-------~~~~~~~~~~~l~---------~~-~~~-~~  171 (373)
T 2qm3_A          112 FTCPHCQGKTVDLQAFADLLEQFREIVKDRP-EPL-HEFDQA-------YVTPETTVARVIL---------MH-TRG-DL  171 (373)
T ss_dssp             ------------CGGGHHHHHHHHHHHTTCC-CCC-GGGTCC-------CBCHHHHHHHHHH---------HH-HTT-CS
T ss_pred             ccchhhcCCCcchhhhHHHHHHHHHHHhcCC-ccc-hhcCCe-------ecCHHHHHHHHHH---------Hh-hcC-CC
Confidence            1100  0    00111234556666666433 111 111110       0111111111110         01 111 22


Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC-----Cceeeehh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA-----ANAIFMKW  227 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~-----~D~i~~~~  227 (309)
                      .+.+|||+| |+|.++..+++..|+.+ ++++|+ +.+++.++++      ++++++.+|+.+.+|.     .|+|++..
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~-v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKR-IAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSE-EEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            457999999 99999999999988888 999999 7888887653      3899999999885442     49999987


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      .+|..   ...++|++++++|+|||++++++...
T Consensus       250 p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          250 PETLE---AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CSSHH---HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             CCchH---HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            66543   24789999999999999776666654

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.61  E-value=2.2e-15  Score=130.97  Aligned_cols=115  Identities=14%  Similarity=0.118  Sum_probs=96.4

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC-Cc
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA-AN  221 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~-~D  221 (309)
                      +.+++.+....+..+|||||||+|.++..+++.+|+.+ ++++|. +.+++.+++    ..+++++.+|+.+. .+. .|
T Consensus        33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD  111 (234)
T 3dtn_A           33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEAT-FTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYD  111 (234)
T ss_dssp             HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEE
T ss_pred             HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCce
Confidence            34444443234568999999999999999999999999 999999 777776654    35899999999875 444 49


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +|++..++|++++.+..++|++++++|+|||++++.+...++.
T Consensus       112 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  154 (234)
T 3dtn_A          112 MVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGET  154 (234)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSS
T ss_pred             EEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCC
Confidence            9999999999999888889999999999999999999887765

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.55  E-value=1.5e-14  Score=129.55  Aligned_cols=102  Identities=18%  Similarity=0.224  Sum_probs=89.1

Q ss_pred             CcceEEEecCCc---cHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC------------C--
Q 021707          160 GVKRLVDVGGSA---GDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS------------I--  217 (309)
Q Consensus       160 ~~~~vlDvG~G~---G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~------------~--  217 (309)
                      +..+|||||||+   |.++..+.+.+|+.+ ++++|+ |.+++.+++    .++++++.+|++++            +  
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~-v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~  155 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDAR-VVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDF  155 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCE-EEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCC
Confidence            457999999999   999888888899999 999999 888887764    37899999999762            2  


Q ss_pred             CCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          218 PAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       218 p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ...|+|++..+||++++++..++|++++++|+|||+|++.+...+
T Consensus       156 ~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~  200 (274)
T 2qe6_A          156 SRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT  200 (274)
T ss_dssp             TSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred             CCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence            235999999999999998888999999999999999999998764

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.54  E-value=2.4e-14  Score=122.52  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=94.0

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--CCceEEeCCCCCCCCC--Cce
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--PGVTHIGGDMFNSIPA--ANA  222 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--~ri~~~~~d~~~~~p~--~D~  222 (309)
                      ...+++.+.......+|||||||+|.++..+++.  ..+ ++++|. +.+++.+++.  ++++++.+|+.+..+.  .|+
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~  110 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADR-VTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDA  110 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEE
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeE
Confidence            3445555543455679999999999999999998  557 999998 7777777653  6899999999876444  399


Q ss_pred             eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |++.+++|++++++..++|+++++.|+|||++++.+...+.
T Consensus       111 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  151 (218)
T 3ou2_A          111 VFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHE  151 (218)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC
T ss_pred             EEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence            99999999999988889999999999999999999887643

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.51  E-value=4e-14  Score=124.84  Aligned_cols=112  Identities=16%  Similarity=0.287  Sum_probs=95.0

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----CCceEEeCCCCCC-CCC--C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----PGVTHIGGDMFNS-IPA--A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----~ri~~~~~d~~~~-~p~--~  220 (309)
                      ..+++.++ .....+|||||||+|.++..+++.+ +.+ ++++|. +.+++.+++.    ++++++.+|+.+. ++.  .
T Consensus        45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  121 (266)
T 3ujc_A           45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAH-THGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF  121 (266)
T ss_dssp             HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred             HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence            44555554 6677899999999999999999988 678 999998 6777766543    7899999999874 443  4


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |+|++.+++|++++.+..++|++++++|+|||++++.++..+.
T Consensus       122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  164 (266)
T 3ujc_A          122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE  164 (266)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred             EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            9999999999998888899999999999999999999987766

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.51  E-value=3.8e-14  Score=121.82  Aligned_cols=112  Identities=18%  Similarity=0.277  Sum_probs=92.9

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--CCceEEeCCCCCC-CCC-Ccee
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--PGVTHIGGDMFNS-IPA-ANAI  223 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--~ri~~~~~d~~~~-~p~-~D~i  223 (309)
                      ..+++.+. .....+|||||||+|.++..+++.  +.+ ++++|. +.+++.+++.  .+++++.+|+.+. .++ .|+|
T Consensus        35 ~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v  110 (220)
T 3hnr_A           35 EDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRT-VYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTI  110 (220)
T ss_dssp             HHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCE-EEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEE
T ss_pred             HHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCe-EEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEE
Confidence            34555554 445679999999999999999988  567 999998 6777776653  4899999999874 444 4999


Q ss_pred             eehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          224 FMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       224 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      ++.+++|++++.+...+|+++++.|+|||++++.++..+..
T Consensus       111 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  151 (220)
T 3hnr_A          111 VSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQ  151 (220)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSH
T ss_pred             EECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccCh
Confidence            99999999999987789999999999999999998776553

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.50  E-value=2.2e-14  Score=123.70  Aligned_cols=100  Identities=14%  Similarity=0.169  Sum_probs=85.5

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC--Cceeeehhhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA--ANAIFMKWVLA  230 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~--~D~i~~~~vlh  230 (309)
                      ...+|||||||+|.++..+++.++  + ++++|. +.+++.++++     .+++++.+|+.+. .+.  .|+|++..++|
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF--E-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            367999999999999999999987  6 999998 7777776543     7899999999874 443  49999999988


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      .+...+..++|+++++.|+|||++++.++..+
T Consensus       115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  146 (227)
T 1ve3_A          115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTDLR  146 (227)
T ss_dssp             GCCHHHHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             hCCHHHHHHHHHHHHHHcCCCcEEEEEecChH
Confidence            88877788999999999999999999987543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.49  E-value=4.4e-14  Score=124.83  Aligned_cols=113  Identities=15%  Similarity=0.271  Sum_probs=93.3

Q ss_pred             ccHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-C
Q 021707          146 PFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-I  217 (309)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~  217 (309)
                      .....+++.++ .....+|||||||+|.++..+++.++  + ++++|+ +.+++.+++.      ++++++.+|+.+. +
T Consensus        24 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~   99 (260)
T 1vl5_A           24 SDLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--K-VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF   99 (260)
T ss_dssp             CCHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS
T ss_pred             HHHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--E-EEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCC
Confidence            34566777775 66778999999999999999999876  6 999998 7787776542      6799999999773 5


Q ss_pred             CC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          218 PA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       218 p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +.  .|+|++..++|++++.  .++|++++++|+|||++++.+...++.
T Consensus       100 ~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~  146 (260)
T 1vl5_A          100 TDERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEN  146 (260)
T ss_dssp             CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSS
T ss_pred             CCCCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCC
Confidence            53  3999999999999877  489999999999999999998876654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.48  E-value=6e-14  Score=119.95  Aligned_cols=107  Identities=11%  Similarity=0.043  Sum_probs=85.7

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------------------CCCceEEe
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------------------IPGVTHIG  210 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------------------~~ri~~~~  210 (309)
                      .+++.+. .....+|||+|||+|..+..+++.  +.+ ++++|+ +.+++.+++                  ..+++++.
T Consensus        13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~-V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~   88 (203)
T 1pjz_A           13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC   88 (203)
T ss_dssp             HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred             HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCe-EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence            3444443 556789999999999999999987  457 999998 678877653                  25899999


Q ss_pred             CCCCCC-CC--C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          211 GDMFNS-IP--A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       211 ~d~~~~-~p--~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +|+++. .+  + .|+|+.+.++|++++++..+++++++++|+|||++++....
T Consensus        89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~  142 (203)
T 1pjz_A           89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLE  142 (203)
T ss_dssp             ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred             CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEe
Confidence            999875 22  2 49999999999999888889999999999999994444333

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.47  E-value=8.2e-14  Score=123.66  Aligned_cols=98  Identities=13%  Similarity=0.072  Sum_probs=84.2

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--CceeeehhhhhcCChh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWTDD  235 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~d~  235 (309)
                      ...+|||||||+|.++..|++.+.  + ++++|. +.+++.+++.++|+++.+|+.+. +|.  .|+|++..++|.++.+
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~--~-v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~  115 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFE--R-VHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD  115 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCS--E-EEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCC--E-EEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH
Confidence            456899999999999999998864  5 999998 78999999999999999999764 555  3999999999887643


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          236 ECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       236 ~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                         +.+++++++|||||+|++.....+.
T Consensus       116 ---~~~~e~~rvLkpgG~l~~~~~~~~~  140 (257)
T 4hg2_A          116 ---RFWAELRRVARPGAVFAAVTYGLTR  140 (257)
T ss_dssp             ---HHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred             ---HHHHHHHHHcCCCCEEEEEECCCCC
Confidence               7899999999999999998765544

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.46  E-value=1.7e-13  Score=119.62  Aligned_cols=106  Identities=16%  Similarity=0.325  Sum_probs=87.4

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCC---CCCC--Cceee
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFN---SIPA--ANAIF  224 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~---~~p~--~D~i~  224 (309)
                      +...++.+.+..+|||||||+|.++..+++.  +.+ ++++|+ +.+++.+++.  ++++.+|+.+   +++.  .|+|+
T Consensus        32 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~  106 (240)
T 3dli_A           32 LRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIE-SIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVM  106 (240)
T ss_dssp             HGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCC-EEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEE
T ss_pred             HHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCc-EEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEE
Confidence            3333332455689999999999999999987  557 999998 7788877755  9999999865   4443  49999


Q ss_pred             ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      +.+++|++++++..++|+++++.|+|||++++..+..
T Consensus       107 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  143 (240)
T 3dli_A          107 ISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP  143 (240)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred             ECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            9999999998888899999999999999999987653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.46  E-value=1e-13  Score=119.08  Aligned_cols=100  Identities=13%  Similarity=0.134  Sum_probs=84.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----------CCceEEeCCCCCC-CC--CCcee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----------PGVTHIGGDMFNS-IP--AANAI  223 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----------~ri~~~~~d~~~~-~p--~~D~i  223 (309)
                      .+..+|||||||+|.++..+++.+|..+ ++++|. +.+++.++++           .+++++.+|+... .+  ..|+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  106 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQ-ITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA  106 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSE-EEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCE-EEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence            3457999999999999999999998888 999998 6777766542           2899999998543 22  25999


Q ss_pred             eehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          224 FMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       224 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ++..++|++++++..++|+++++.|+|||.+++...
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  142 (217)
T 3jwh_A          107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN  142 (217)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred             eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence            999999999998889999999999999997777654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.45  E-value=1.1e-13  Score=121.55  Aligned_cols=112  Identities=21%  Similarity=0.298  Sum_probs=91.8

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----CCceEEeCCCCCC-CCC--C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----PGVTHIGGDMFNS-IPA--A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----~ri~~~~~d~~~~-~p~--~  220 (309)
                      ..+++.++ .....+|||||||+|.++..+++.. ..+ ++++|. +.+++.+++.    .+++++.+|+.+. ++.  .
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YAT-TDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSE-EEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCE-EEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence            45566664 5567899999999999999999887 456 999998 6777766542    6799999998764 443  4


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |+|++.+++|++++++..++|++++++|+|||++++.+.....
T Consensus       160 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  202 (254)
T 1xtp_A          160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTG  202 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--
T ss_pred             EEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCc
Confidence            9999999999999888899999999999999999999975543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.45  E-value=1.5e-13  Score=120.85  Aligned_cols=113  Identities=18%  Similarity=0.131  Sum_probs=93.0

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IP  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p  218 (309)
                      ...+++.++ .....+|||||||+|.++..+++.+ +.+ ++++|. +.+++.+++.       ++++++.+|+.+. .+
T Consensus        25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  101 (256)
T 1nkv_A           25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GIT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN  101 (256)
T ss_dssp             HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCe-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcC
Confidence            345566664 6677899999999999999999987 667 999998 7777776542       5899999999775 32


Q ss_pred             C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          219 A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       219 ~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      + .|+|++..++|++++.  .++|++++++|+|||++++.++.....+
T Consensus       102 ~~fD~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~  147 (256)
T 1nkv_A          102 EKCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLP  147 (256)
T ss_dssp             SCEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCC
T ss_pred             CCCCEEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCC
Confidence            3 4999999999999865  5899999999999999999998766543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.44  E-value=8.6e-14  Score=118.89  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=88.6

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPA  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~  219 (309)
                      ..+++.++ .... +|||||||+|.++..+++. |+.+ ++++|. +.+++.+++.       ++++++.+|+.+. ++.
T Consensus        34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  109 (219)
T 3dlc_A           34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFS-IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED  109 (219)
T ss_dssp             HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred             HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence            44455554 4444 9999999999999999998 7888 999998 7777776542       5899999999874 443


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                        .|+|++.+++|++++.  .++|+++++.|+|||++++.+...+.
T Consensus       110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~  153 (219)
T 3dlc_A          110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNK  153 (219)
T ss_dssp             TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSH
T ss_pred             ccccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcH
Confidence              4999999999999765  58999999999999999998765443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.44  E-value=1.5e-13  Score=118.10  Aligned_cols=99  Identities=12%  Similarity=0.184  Sum_probs=83.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----------CCceEEeCCCCCC-CC--CCcee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----------PGVTHIGGDMFNS-IP--AANAI  223 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----------~ri~~~~~d~~~~-~p--~~D~i  223 (309)
                      .+..+|||||||+|.++..+++.+|..+ ++++|. +.+++.++++           ++++++.+|+... .+  ..|+|
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V  106 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQ-ITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA  106 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCE-EEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence            3457999999999999999999999888 999998 7777777642           2899999999553 22  24999


Q ss_pred             eehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          224 FMKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       224 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      ++..++|++++++..++|+++++.|+|||.+++..
T Consensus       107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A          107 TVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             EEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            99999999999888899999999999999666554

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.44  E-value=2e-13  Score=119.43  Aligned_cols=103  Identities=16%  Similarity=0.066  Sum_probs=87.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC---CCCceEEeCCCCCC-CCC-------Cceeee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS---IPGVTHIGGDMFNS-IPA-------ANAIFM  225 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~---~~ri~~~~~d~~~~-~p~-------~D~i~~  225 (309)
                      .....+|||||||+|.++..+++.++  + ++++|. +.+++.+++   ..+++++.+|+.+. .+.       .|+|++
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~  130 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP--R-VIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYM  130 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS--C-EEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC--C-EEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEE
Confidence            34567999999999999999999988  6 999998 677777654   35899999999874 211       589999


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      ..++|++++++..++|++++++|+|||+++|.+...++
T Consensus       131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  168 (245)
T 3ggd_A          131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC  168 (245)
T ss_dssp             ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred             cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence            99999999888899999999999999999999986543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.43  E-value=3.2e-13  Score=121.00  Aligned_cols=111  Identities=12%  Similarity=0.119  Sum_probs=92.1

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA-  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~-  219 (309)
                      ..+++.++ .....+|||||||+|.++..+++.++ .+ ++++|+ +.+++.+++.       ++++++.+|+.+ +|+ 
T Consensus        54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~-v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~  129 (287)
T 1kpg_A           54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VN-VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP  129 (287)
T ss_dssp             HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred             HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CE-EEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCC
Confidence            44566664 66778999999999999999998775 47 999998 6677666542       589999999854 444 


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      .|+|++..++|++++++..++|+++++.|+|||++++.+...+.
T Consensus       130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  173 (287)
T 1kpg_A          130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLH  173 (287)
T ss_dssp             CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECC
T ss_pred             eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCC
Confidence            59999999999998777789999999999999999999987654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.43  E-value=3.9e-13  Score=121.56  Aligned_cols=112  Identities=13%  Similarity=0.174  Sum_probs=94.3

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA-  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~-  219 (309)
                      ..+++.++ .....+|||||||+|.++..+++.++ .+ ++++|+ +.+++.++++       ++++++.+|+.+. +. 
T Consensus        62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~  137 (302)
T 3hem_A           62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VN-VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP  137 (302)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred             HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence            45666665 67778999999999999999999987 78 999999 6777776542       4899999999765 44 


Q ss_pred             CceeeehhhhhcCCh-------hHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 ANAIFMKWVLATWTD-------DECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d-------~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .|+|++..++|++++       ++..++|+++++.|+|||++++.+...++.
T Consensus       138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  189 (302)
T 3hem_A          138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDK  189 (302)
T ss_dssp             CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCH
T ss_pred             ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCc
Confidence            599999999999954       567899999999999999999999887654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.43  E-value=7.6e-13  Score=117.20  Aligned_cols=109  Identities=10%  Similarity=0.140  Sum_probs=92.1

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--Ccee
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAI  223 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i  223 (309)
                      ...+++.++ .....+|||||||+|.++..+++  |+.+ ++++|+ +.+++.+++..+++++.+|+.+. ++.  .|+|
T Consensus        23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v   98 (261)
T 3ege_A           23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLF-VYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGV   98 (261)
T ss_dssp             HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCE-EEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEE
T ss_pred             HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCE-EEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEE
Confidence            445666664 56778999999999999999997  6778 999999 78899888888999999999764 443  4999


Q ss_pred             eehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          224 FMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       224 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      ++.+++|++++.  .++|++++++|+ ||++++.+...+.
T Consensus        99 ~~~~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~  135 (261)
T 3ege_A           99 ISILAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRL  135 (261)
T ss_dssp             EEESCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGG
T ss_pred             EEcchHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCch
Confidence            999999999766  589999999999 9999999876443

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.43  E-value=3.3e-13  Score=113.74  Aligned_cols=111  Identities=14%  Similarity=0.082  Sum_probs=91.4

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA-  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~-  219 (309)
                      +.+++.++ ..+..+|||||||+|.++..+++.  +.+ ++++|. +.+++.+++.      ++++++.+|+.+. .+. 
T Consensus        22 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~   97 (199)
T 2xvm_A           22 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYD-VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQ   97 (199)
T ss_dssp             HHHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCC
T ss_pred             HHHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCC
Confidence            44566664 556679999999999999999987  567 999998 6777776542      4799999998764 333 


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      .|+|++..++|++++++..++|+++++.|+|||++++.+...++
T Consensus        98 ~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  141 (199)
T 2xvm_A           98 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTA  141 (199)
T ss_dssp             EEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCS
T ss_pred             ceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccC
Confidence            49999999999999888889999999999999999998876544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.43  E-value=4.2e-13  Score=122.04  Aligned_cols=112  Identities=13%  Similarity=0.054  Sum_probs=92.2

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IP  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p  218 (309)
                      ...+++.++.+....+|||||||+|.++..+++.+ +.+ ++++|. +.+++.++++       ++++++.+|+.+. ++
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  182 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSR-VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFD  182 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC
T ss_pred             HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCC
Confidence            34566666435667899999999999999999986 577 999998 7777776542       5899999999874 44


Q ss_pred             C--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          219 A--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       219 ~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .  .|+|++..++|+++   ..++|++++++|+|||++++.+....+.
T Consensus       183 ~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~  227 (312)
T 3vc1_A          183 KGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPR  227 (312)
T ss_dssp             TTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTT
T ss_pred             CCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEcccccc
Confidence            3  49999999999994   5799999999999999999999877664

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.42  E-value=3.6e-13  Score=115.57  Aligned_cols=113  Identities=18%  Similarity=0.146  Sum_probs=95.1

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IP  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p  218 (309)
                      ...+++.++ .....+|||||||+|.++..+++.+ |..+ ++++|. +.+++.+++.      ++++++.+|+.+. ++
T Consensus        26 ~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~  103 (219)
T 3dh0_A           26 PEKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGK-VYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLP  103 (219)
T ss_dssp             HHHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCC
Confidence            355667765 6777899999999999999999997 7888 999998 7777777542      5899999999764 44


Q ss_pred             C--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          219 A--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       219 ~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .  .|+|++..++|++++.  ..+|+++++.|+|||++++.+......
T Consensus       104 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~  149 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEER  149 (219)
T ss_dssp             SSCEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCC
T ss_pred             CCCeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEeccccc
Confidence            4  4999999999999865  589999999999999999998776654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.42  E-value=2.6e-13  Score=118.53  Aligned_cols=111  Identities=17%  Similarity=0.264  Sum_probs=92.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~  219 (309)
                      ...+++.++ .....+|||||||+|.++..+++.++  + ++++|. +.+++.+++.      ++++++.+|+.+. ++.
T Consensus        10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A           10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--E-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred             cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence            455667775 77788999999999999999999875  6 999998 6777776542      6899999999763 443


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                        .|+|++.+++|++++.  .++|++++++|+|||++++.+...++.
T Consensus        86 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~  130 (239)
T 1xxl_A           86 DSFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPED  130 (239)
T ss_dssp             TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSS
T ss_pred             CcEEEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCC
Confidence              4999999999999876  589999999999999999999887654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.42  E-value=5e-13  Score=121.62  Aligned_cols=111  Identities=14%  Similarity=0.217  Sum_probs=93.3

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA-  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~-  219 (309)
                      ..+++.++ .....+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++.       ++++++.+|+.+ .|. 
T Consensus        80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~  155 (318)
T 2fk8_A           80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP  155 (318)
T ss_dssp             HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred             HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCC
Confidence            45566664 6677899999999999999999987 567 999998 6777766542       579999999855 344 


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      .|+|++..++|++++++..++|+++++.|+|||++++.++..+.
T Consensus       156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH  199 (318)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence            59999999999998877889999999999999999999988765

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.42  E-value=2.7e-13  Score=121.70  Aligned_cols=108  Identities=16%  Similarity=0.167  Sum_probs=89.4

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-C
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-A  220 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-~  220 (309)
                      .+++.+....+..+|||||||+|.++..+++.+|. .+ ++++|+ +.+++.+++.     .+++++.+|+.+. .++ .
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f   90 (284)
T 3gu3_A           12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY   90 (284)
T ss_dssp             HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCE-EEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred             HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCe
Confidence            34444423556789999999999999999999995 78 999998 6677666542     4899999999874 444 4


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      |+|++..++|++++.  .++|+++++.|+|||++++.++.
T Consensus        91 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           91 DIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECC
T ss_pred             eEEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecc
Confidence            999999999999877  49999999999999999999877

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.41  E-value=3.6e-13  Score=118.43  Aligned_cols=108  Identities=18%  Similarity=0.247  Sum_probs=91.2

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-CCCceEEeCCCCCCCCC--Cceee
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-IPGVTHIGGDMFNSIPA--ANAIF  224 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-~~ri~~~~~d~~~~~p~--~D~i~  224 (309)
                      ..+++.+. .....+|||||||+|.++..+++.+|..+ ++++|. +.+++.+++ .++++++.+|+.+..+.  .|+|+
T Consensus        23 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~  100 (259)
T 2p35_A           23 RDLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNV-ITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLY  100 (259)
T ss_dssp             HHHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTS-EEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEE
T ss_pred             HHHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEE
Confidence            34566664 56678999999999999999999999999 999999 778877765 37899999999764333  39999


Q ss_pred             ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +++++|++++.  .++|+++++.|+|||++++..+.
T Consensus       101 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A          101 ANAVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             EESCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             EeCchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCC
Confidence            99999999765  58999999999999999998754

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.41  E-value=4.6e-13  Score=118.41  Aligned_cols=102  Identities=17%  Similarity=0.191  Sum_probs=85.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC-Cceeeehh-hhhcCC
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA-ANAIFMKW-VLATWT  233 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~-~D~i~~~~-vlh~~~  233 (309)
                      ++..+|||||||+|.++..+++.++  + ++++|+ +.+++.+++. .+++++.+|+.+. .+. .|+|++.. ++|+++
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~  125 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG--T-VEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLA  125 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS--E-EEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSC
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC--e-EEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcC
Confidence            3567999999999999999998854  6 999999 7788877653 6899999999875 444 49999998 999997


Q ss_pred             h-hHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          234 D-DECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       234 d-~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      + ++..++|+++++.|+|||+++|.+...++
T Consensus       126 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  156 (263)
T 3pfg_A          126 GQAELDAALERFAAHVLPDGVVVVEPWWFPE  156 (263)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence            5 56789999999999999999997654444

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.41  E-value=2e-13  Score=118.86  Aligned_cols=98  Identities=18%  Similarity=0.221  Sum_probs=82.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--CCceEEeCCCCCCCCC--CceeeehhhhhcCC
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--PGVTHIGGDMFNSIPA--ANAIFMKWVLATWT  233 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--~ri~~~~~d~~~~~p~--~D~i~~~~vlh~~~  233 (309)
                      .+..+|||||||+|.++..+++.++  + ++++|. +.+++.+++.  .+++++.+|+.+..+.  .|+|++.+++|+++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~  117 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN--D-ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID  117 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS--C-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhc
Confidence            3457899999999999999999876  5 999998 6777776643  2899999999776443  39999999999998


Q ss_pred             hhHHHHHHHHHH-HhcCCCcEEEEecccc
Q 021707          234 DDECKLIMENCY-KALLAGGKLIACEPVL  261 (309)
Q Consensus       234 d~~~~~iL~~~~-~aL~pgG~l~i~e~~~  261 (309)
                      +.  .++|++++ ++|+|||++++.++..
T Consensus       118 ~~--~~~l~~~~~~~LkpgG~l~i~~~~~  144 (250)
T 2p7i_A          118 DP--VALLKRINDDWLAEGGRLFLVCPNA  144 (250)
T ss_dssp             SH--HHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred             CH--HHHHHHHHHHhcCCCCEEEEEcCCh
Confidence            77  58999999 9999999999987644

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.41  E-value=2.9e-13  Score=121.81  Aligned_cols=111  Identities=14%  Similarity=0.201  Sum_probs=92.1

Q ss_pred             HHHHhhc----CCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC
Q 021707          149 TSVLDSY----NGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS  216 (309)
Q Consensus       149 ~~~~~~~----~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~  216 (309)
                      ..+++.+    . .....+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++.       ++++++.+|+.+.
T Consensus        68 ~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  144 (297)
T 2o57_A           68 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI  144 (297)
T ss_dssp             HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred             HHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence            4455555    4 5667899999999999999999987 457 999999 6777766542       6899999999874


Q ss_pred             -CCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          217 -IPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       217 -~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                       ++.  .|+|++..++|++++.  .++|++++++|+|||++++.++..++.
T Consensus       145 ~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~  193 (297)
T 2o57_A          145 PCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDG  193 (297)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTT
T ss_pred             CCCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCC
Confidence             443  3999999999999884  699999999999999999999887654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.41  E-value=2.6e-13  Score=122.46  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=83.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----------------------------------
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----------------------------------  203 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----------------------------------  203 (309)
                      ....+|||||||+|.++..+++.+|..+ ++++|+ +.+++.++++                                  
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~-v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSR-MVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSE-EEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            3568999999999999999999999999 999999 6677666432                                  


Q ss_pred             ------------------------------CCceEEeCCCCCCC------C-C-CceeeehhhhhcC----ChhHHHHHH
Q 021707          204 ------------------------------PGVTHIGGDMFNSI------P-A-ANAIFMKWVLATW----TDDECKLIM  241 (309)
Q Consensus       204 ------------------------------~ri~~~~~d~~~~~------p-~-~D~i~~~~vlh~~----~d~~~~~iL  241 (309)
                                                    .+|+++.+|+....      + . .|+|++..+++++    ++++..++|
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l  203 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMF  203 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHH
Confidence                                          48999999998642      2 2 4999999998654    777889999


Q ss_pred             HHHHHhcCCCcEEEEecc
Q 021707          242 ENCYKALLAGGKLIACEP  259 (309)
Q Consensus       242 ~~~~~aL~pgG~l~i~e~  259 (309)
                      ++++++|+|||+|++...
T Consensus       204 ~~~~~~LkpGG~lil~~~  221 (292)
T 3g07_A          204 RRIYRHLRPGGILVLEPQ  221 (292)
T ss_dssp             HHHHHHEEEEEEEEEECC
T ss_pred             HHHHHHhCCCcEEEEecC
Confidence            999999999999988643

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.40  E-value=1.9e-13  Score=116.09  Aligned_cols=100  Identities=16%  Similarity=0.053  Sum_probs=86.2

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-CCCceEEeCCCCCC-CCC--CceeeehhhhhcCChh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-IPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWTDD  235 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~d~  235 (309)
                      ..+|||||||+|.++..+++.  +.+ ++++|. +.+++.+++ .++++++.+|+.+. .+.  .|+|++.+++|+++.+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~  118 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQ-IEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPG  118 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCC-EEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTT
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHH
Confidence            579999999999999999988  457 999998 778887765 47899999999764 333  4999999999999977


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          236 ECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       236 ~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +..++|++++++|+|||++++.+...+.
T Consensus       119 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~  146 (203)
T 3h2b_A          119 ELPDALVALRMAVEDGGGLLMSFFSGPS  146 (203)
T ss_dssp             THHHHHHHHHHTEEEEEEEEEEEECCSS
T ss_pred             HHHHHHHHHHHHcCCCcEEEEEEccCCc
Confidence            7889999999999999999998866554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.40  E-value=5.8e-13  Score=118.23  Aligned_cols=112  Identities=17%  Similarity=0.193  Sum_probs=93.1

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IP  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p  218 (309)
                      ...+++.++ .....+|||||||+|.++..+++.+ +.+ ++++|+ +.+++.+++       .++++++.+|+.+. ++
T Consensus        50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  126 (273)
T 3bus_A           50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVR-VTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE  126 (273)
T ss_dssp             HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence            355667775 6677899999999999999999987 678 999998 667766653       25899999999774 44


Q ss_pred             C--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          219 A--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       219 ~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .  .|+|++..++|++++.  .++|+++++.|+|||++++.+.....+
T Consensus       127 ~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~  172 (273)
T 3bus_A          127 DASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAP  172 (273)
T ss_dssp             TTCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSC
T ss_pred             CCCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence            3  3999999999999876  589999999999999999999877654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.39  E-value=4.5e-13  Score=114.48  Aligned_cols=102  Identities=19%  Similarity=0.116  Sum_probs=86.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCC-C-CceeeehhhhhcCCh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIP-A-ANAIFMKWVLATWTD  234 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p-~-~D~i~~~~vlh~~~d  234 (309)
                      +....+|||||||+|.++..+++.  ..+ ++++|. +.+++.+++..+++++.+|+.+..+ + .|+|++.+++|++++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  117 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFD-VDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPR  117 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCe-EEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCH
Confidence            345679999999999999999987  557 999998 7788877766578889999876433 3 499999999999998


Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          235 DECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       235 ~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ++..++|+++++.|+|||++++......
T Consensus       118 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~  145 (211)
T 3e23_A          118 DELADVLKLIWRALKPGGLFYASYKSGE  145 (211)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEECCS
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEcCCC
Confidence            8889999999999999999999865443

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.39  E-value=6.4e-13  Score=124.13  Aligned_cols=113  Identities=13%  Similarity=0.204  Sum_probs=90.2

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC---------------CCCceEEeC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS---------------IPGVTHIGG  211 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~---------------~~ri~~~~~  211 (309)
                      +..+++.+. .....+|||||||+|..+..++..++..+ ++++|+ +.+++.|++               .++|+++.+
T Consensus       162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~k-VvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G  239 (438)
T 3uwp_A          162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKH-HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  239 (438)
T ss_dssp             HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence            445666664 77788999999999999999999887767 999999 455554432               268999999


Q ss_pred             CCCCC-C----CCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          212 DMFNS-I----PAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       212 d~~~~-~----p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      |+++. +    +.+|+|+++++++ +  ++..+.|+++++.|+|||+|++.|.+.+++.
T Consensus       240 D~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~  295 (438)
T 3uwp_A          240 DFLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF  295 (438)
T ss_dssp             CTTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred             cccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence            99875 3    2469999887763 3  3446788999999999999999999999865

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.38  E-value=7.4e-13  Score=116.40  Aligned_cols=110  Identities=17%  Similarity=0.163  Sum_probs=88.6

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCC-
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPA-  219 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~-  219 (309)
                      .+++.+.......+|||||||+|.++..+++.+|. + ++++|. +.+++.++++       ++++++.+|+.+. ++. 
T Consensus        36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  113 (257)
T 3f4k_A           36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-Q-ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE  113 (257)
T ss_dssp             HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-E-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-e-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence            34444433556679999999999999999999986 7 999998 6677766542       5699999999664 443 


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                       .|+|++..++|+++   ..++|+++++.|+|||++++.++.+...
T Consensus       114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~  156 (257)
T 3f4k_A          114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTS  156 (257)
T ss_dssp             CEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSS
T ss_pred             CEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCC
Confidence             49999999999993   3589999999999999999999875554

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.38  E-value=7.8e-13  Score=117.30  Aligned_cols=110  Identities=16%  Similarity=0.114  Sum_probs=89.3

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCC--
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPA--  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~--  219 (309)
                      +++.+.......+|||||||+|.++..+++. +..+ ++++|+ +.+++.+++.       ++++++.+|+.+. ++.  
T Consensus        37 ~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  114 (267)
T 3kkz_A           37 ALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQ-VTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE  114 (267)
T ss_dssp             HHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred             HHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence            4444432456789999999999999999998 7888 999998 6777766542       6799999999764 343  


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      .|+|++..++|++ +.  .++|+++++.|+|||++++.+..+..+.
T Consensus       115 fD~i~~~~~~~~~-~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~  157 (267)
T 3kkz_A          115 LDLIWSEGAIYNI-GF--ERGLNEWRKYLKKGGYLAVSECSWFTDE  157 (267)
T ss_dssp             EEEEEESSCGGGT-CH--HHHHHHHGGGEEEEEEEEEEEEEESSSC
T ss_pred             EEEEEEcCCceec-CH--HHHHHHHHHHcCCCCEEEEEEeeecCCC
Confidence            4999999999999 33  5899999999999999999998765543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.38  E-value=5.9e-13  Score=115.78  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=84.4

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC--Cceeeehhhhhc
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA--ANAIFMKWVLAT  231 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~--~D~i~~~~vlh~  231 (309)
                      .+|||||||+|.++..+++  +..+ ++++|. +.+++.+++.       .+++++.+|+.+..+.  .|+|++..++|+
T Consensus        68 ~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMAS--PERF-VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCB--TTEE-EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCEEEeCCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            5999999999999999876  5667 999998 6777766542       4699999999886444  499999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +++++..++|+++++.|+|||++++.+.....
T Consensus       145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  176 (235)
T 3lcc_A          145 IEPEMRPAWAKSMYELLKPDGELITLMYPITD  176 (235)
T ss_dssp             SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSC
T ss_pred             CCHHHHHHHHHHHHHHCCCCcEEEEEEecccc
Confidence            99888899999999999999999998876554

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.38  E-value=6e-13  Score=118.40  Aligned_cols=101  Identities=18%  Similarity=0.267  Sum_probs=87.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC--Cceeeehh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA--ANAIFMKW  227 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~--~D~i~~~~  227 (309)
                      +....+|||||||+|.++..+++.+|+.+ ++++|. +.+++.+++.      ++++++.+|+.+. ++.  .|+|++++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  113 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAE-ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCF  113 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEES
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEec
Confidence            56678999999999999999999999999 999998 6777766542      6899999999864 433  49999999


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      ++|++++.+  .+|+++++.|+|||++++.+...
T Consensus       114 ~l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~  145 (276)
T 3mgg_A          114 VLEHLQSPE--EALKSLKKVLKPGGTITVIEGDH  145 (276)
T ss_dssp             CGGGCSCHH--HHHHHHHHHEEEEEEEEEEEECG
T ss_pred             hhhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCC
Confidence            999998874  89999999999999999998644

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.38  E-value=7.3e-13  Score=118.31  Aligned_cols=109  Identities=18%  Similarity=0.161  Sum_probs=90.1

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC-Cce
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA-ANA  222 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~-~D~  222 (309)
                      ....+++.++ .....+|||||||+|.++..+++  +..+ ++++|. +.+++.+++. ++++++.+|+.+. .+. .|+
T Consensus        45 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~  120 (279)
T 3ccf_A           45 YGEDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAE-VLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDA  120 (279)
T ss_dssp             SCCHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCE-EEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEE
T ss_pred             HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCE
Confidence            3455666665 56678999999999999999998  6778 999998 7788777654 7899999999764 433 499


Q ss_pred             eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      |++.+++|++++.  .++|++++++|+|||++++..+..
T Consensus       121 v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          121 VFSNAMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEEcchhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCC
Confidence            9999999999876  489999999999999999876543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.37  E-value=8.4e-13  Score=113.10  Aligned_cols=99  Identities=20%  Similarity=0.253  Sum_probs=83.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCCCCC--Cceeeehhhhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNSIPA--ANAIFMKWVLA  230 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~~p~--~D~i~~~~vlh  230 (309)
                      .....+|||||||+|.++..+++.+  .+ ++++|. +.+++.+++    .++++++.+|+.+..+.  .|+|++.+++|
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~  125 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHC--KR-LTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLY  125 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGE--EE-EEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGG
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHH
Confidence            4567899999999999999999886  36 999998 667766653    36899999999876443  49999999999


Q ss_pred             cCCh-hHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          231 TWTD-DECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       231 ~~~d-~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ++++ ++..++|+++++.|+|||++++..+
T Consensus       126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            9996 5567899999999999999998764

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.37  E-value=9.3e-13  Score=115.68  Aligned_cols=105  Identities=17%  Similarity=0.099  Sum_probs=85.9

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC---CCCceEEeCCCCCC-CCC--Cc
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS---IPGVTHIGGDMFNS-IPA--AN  221 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~---~~ri~~~~~d~~~~-~p~--~D  221 (309)
                      ..+.+.++ .....+|||||||+|.++..+++..+. + ++++|. +.+++.+++   ..+++++.+|+.+. ++.  .|
T Consensus        34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD  110 (253)
T 3g5l_A           34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-K-VLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYN  110 (253)
T ss_dssp             HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-E-EEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEE
T ss_pred             HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-E-EEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeE
Confidence            34455554 446789999999999999999999765 6 999998 777777654   37899999999764 443  49


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +|++..++|++++.  .++|++++++|+|||++++..
T Consensus       111 ~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~  145 (253)
T 3g5l_A          111 VVLSSLALHYIASF--DDICKKVYINLKSSGSFIFSV  145 (253)
T ss_dssp             EEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEe
Confidence            99999999999765  699999999999999999974

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.37  E-value=1.6e-12  Score=117.26  Aligned_cols=97  Identities=20%  Similarity=0.124  Sum_probs=82.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC--------CCCceEEeCCCCCC-CC-------C-
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS--------IPGVTHIGGDMFNS-IP-------A-  219 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~--------~~ri~~~~~d~~~~-~p-------~-  219 (309)
                      ....+|||||||+|.++..+++.+ +..+ ++++|+ +.+++.+++        .++++++.+|+.+. .+       . 
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQ-IIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSE-EEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence            467899999999999999999987 8888 999999 677777654        47999999999874 32       2 


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      .|+|++..++|++ +  ..++|+++++.|+|||.+++.+.
T Consensus       114 fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~  150 (299)
T 3g5t_A          114 IDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGY  150 (299)
T ss_dssp             EEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEec
Confidence            4999999999999 4  46999999999999999999443

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.37  E-value=3.8e-13  Score=117.48  Aligned_cols=102  Identities=16%  Similarity=0.253  Sum_probs=86.5

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC--Cceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA--ANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~--~D~i~~~~vl  229 (309)
                      +..+|||||||+|.++..+++.+ ..+ ++++|. +.+++.+++.      .+++++.+|+.+. .+.  .|+|++.+++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  156 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FRE-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  156 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSE-EEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchh
Confidence            46799999999999999999887 457 999998 7777776542      3589999998654 333  4999999999


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |++++++..++|+++++.|+|||++++.+...+.
T Consensus       157 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  190 (241)
T 2ex4_A          157 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE  190 (241)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC
Confidence            9999988889999999999999999999887654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.37  E-value=1.9e-12  Score=112.28  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=85.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC-Cceeee-hhhhhcCC
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA-ANAIFM-KWVLATWT  233 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~-~D~i~~-~~vlh~~~  233 (309)
                      .+..+|||||||+|.++..+++.++  + ++++|. +.+++.+++. ++++++.+|+.+. .+. .|+|++ ..++|+++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~  115 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--D-TAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLK  115 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--E-EEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCC
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcC
Confidence            4567999999999999999999987  6 999999 7788877654 7899999999774 333 499994 55999886


Q ss_pred             h-hHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          234 D-DECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       234 d-~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      + ++..++|+++++.|+|||++++.+...++.
T Consensus       116 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  147 (239)
T 3bxo_A          116 TTEELGAAVASFAEHLEPGGVVVVEPWWFPET  147 (239)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEECCCCCTTT
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEEEEeccCccc
Confidence            4 677899999999999999999987766553

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.35  E-value=1.7e-12  Score=112.94  Aligned_cols=106  Identities=19%  Similarity=0.229  Sum_probs=85.5

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCCC-CCC--Cc
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFNS-IPA--AN  221 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~~-~p~--~D  221 (309)
                      +.+.+.++ .....+|||||||+|.++..+++... .+ ++++|. +.+++.+++.   .+++++.+|+.+. .+.  .|
T Consensus        33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD  109 (243)
T 3bkw_A           33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SY-VLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD  109 (243)
T ss_dssp             HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred             HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-Ce-EEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence            34555554 45668999999999999999998843 26 999998 6777776543   5799999999764 433  49


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      +|++.+++|++++.  .++|++++++|+|||++++..+
T Consensus       110 ~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          110 LAYSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             EEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEeccccccchH--HHHHHHHHHhcCcCcEEEEEeC
Confidence            99999999999865  5899999999999999999764

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.35  E-value=1.3e-12  Score=122.43  Aligned_cols=103  Identities=16%  Similarity=0.165  Sum_probs=88.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC--------------CCceEEeCCCCC-------
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI--------------PGVTHIGGDMFN-------  215 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~--------------~ri~~~~~d~~~-------  215 (309)
                      .+..+|||||||+|.++..+++.+ |+.+ ++++|+ +.+++.++++              ++++++.+|+.+       
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGK-VIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCE-EEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            346799999999999999999997 7888 999999 7777777643              689999999986       


Q ss_pred             CCCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          216 SIPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       216 ~~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +++.  .|+|+++.++|++++.  .++|++++++|+|||++++.+...+..
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~  209 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRR  209 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSC
T ss_pred             CCCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccc
Confidence            4444  3999999999999876  599999999999999999998776643

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.35  E-value=4.9e-13  Score=121.18  Aligned_cols=106  Identities=14%  Similarity=0.064  Sum_probs=87.9

Q ss_pred             CCCcceEEEecCCccHHHHHHH-HhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCC-Cceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMIL-QKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPA-ANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~-~D~i~~~  226 (309)
                      .....+|||||||+|.++..++ ..+|+.+ ++++|. +.+++.++++       ++++++.+|+.+. .+. .|+|++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~  194 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQ-LVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN  194 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCE-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCe-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence            4567899999999999999996 6788999 999999 7777776542       4699999999875 444 4999999


Q ss_pred             hhhhcCChhH-HHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          227 WVLATWTDDE-CKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       227 ~vlh~~~d~~-~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .++|++++.+ ..++|+++++.|+|||++++.+...+..
T Consensus       195 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~  233 (305)
T 3ocj_A          195 GLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPA  233 (305)
T ss_dssp             SSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTT
T ss_pred             ChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCc
Confidence            9999997554 4579999999999999999988766543

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.35  E-value=2.4e-12  Score=115.16  Aligned_cols=96  Identities=19%  Similarity=0.142  Sum_probs=80.2

Q ss_pred             cceEEEecCCccH----HHHHHHHhcC----CCceEEEeec-hhHHhhCCCC----------------------------
Q 021707          161 VKRLVDVGGSAGD----CLRMILQKHH----FICEGINFDL-PEVVGEAPSI----------------------------  203 (309)
Q Consensus       161 ~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~~D~-p~~~~~a~~~----------------------------  203 (309)
                      ..+|+|+|||+|.    +++.+++.+|    +.+ +++.|+ +.+++.|++.                            
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~-I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWK-VFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEE-EEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeE-EEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            4689999999998    6666777756    457 999999 6777776431                            


Q ss_pred             ---------CCceEEeCCCCCC-CC--C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          204 ---------PGVTHIGGDMFNS-IP--A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       204 ---------~ri~~~~~d~~~~-~p--~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                               .+|+|..+|+.++ +|  . .|+|++++++++++++...+++++++++|+|||.|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                     3699999999984 55  3 49999999999999988899999999999999999883

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.35  E-value=1.2e-12  Score=118.18  Aligned_cols=111  Identities=11%  Similarity=0.064  Sum_probs=88.8

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---------CCceEEeCCCCCC
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---------PGVTHIGGDMFNS  216 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---------~ri~~~~~d~~~~  216 (309)
                      ....+++.++ . ...+|||||||+|.++..+++.  +.+ ++++|+ +.+++.++++         .+++++.+|+.+.
T Consensus        71 ~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~  145 (299)
T 3g2m_A           71 EAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWE-VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF  145 (299)
T ss_dssp             HHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCC-EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred             HHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence            3455666664 3 3349999999999999999988  467 999998 7788777642         6799999999874


Q ss_pred             -CCC-Cceeee-hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          217 -IPA-ANAIFM-KWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       217 -~p~-~D~i~~-~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                       .+. .|+|++ ..++|++++++..++|+++++.|+|||+|++.....+
T Consensus       146 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  194 (299)
T 3g2m_A          146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE  194 (299)
T ss_dssp             CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence             444 498885 5788888888889999999999999999999876554

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.35  E-value=4.3e-13  Score=110.58  Aligned_cols=107  Identities=15%  Similarity=0.153  Sum_probs=88.4

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-CCCceEEeCCCCCCCCC--Cceeeeh
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-IPGVTHIGGDMFNSIPA--ANAIFMK  226 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-~~ri~~~~~d~~~~~p~--~D~i~~~  226 (309)
                      +++.++ ..+..+|||||||+|.++..+++.+.  + ++++|. +.+++.+++ .++++++.+|  .+++.  .|+|++.
T Consensus         9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~   82 (170)
T 3i9f_A            9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--K-LYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA   82 (170)
T ss_dssp             THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--E-EEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred             HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--e-EEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence            444444 56678999999999999999999984  6 999998 677777765 4899999999  33443  4999999


Q ss_pred             hhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          227 WVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      +++|++++.  .++|+++++.|+|||++++.+.......
T Consensus        83 ~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~  119 (170)
T 3i9f_A           83 NSFHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTG  119 (170)
T ss_dssp             SCSTTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCS
T ss_pred             cchhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccc
Confidence            999999765  5899999999999999999998766543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.35  E-value=3.4e-12  Score=111.00  Aligned_cols=100  Identities=15%  Similarity=0.114  Sum_probs=84.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCCC-CCC--Cceeeehhhhhc
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFNS-IPA--ANAIFMKWVLAT  231 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~  231 (309)
                      +...+|||||||+|.++..+++.  +.+ ++++|. +.+++.+++.   .+++++.+|+.+. ++.  .|+|++.+++|+
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  128 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT--GYK-AVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW  128 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence            35679999999999999999988  557 999998 7777777654   7899999999874 443  499999999999


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +++.  .++|+++++.|+|||++++.+.....
T Consensus       129 ~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~  158 (242)
T 3l8d_A          129 TEEP--LRALNEIKRVLKSDGYACIAILGPTA  158 (242)
T ss_dssp             SSCH--HHHHHHHHHHEEEEEEEEEEEECTTC
T ss_pred             ccCH--HHHHHHHHHHhCCCeEEEEEEcCCcc
Confidence            9776  48999999999999999999855443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.34  E-value=1.2e-12  Score=111.31  Aligned_cols=104  Identities=12%  Similarity=0.064  Sum_probs=84.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC--Cceeeehhhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA--ANAIFMKWVL  229 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~--~D~i~~~~vl  229 (309)
                      ....+|||||||+|.++..++.. ++.+ ++++|. +.+++.+++.     .+++++.+|+.+. ++.  .|+|++..++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE-DGYK-TYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH-TTCE-EEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh-CCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence            34679999999999985555544 5678 999998 6777776542     6799999999764 443  4999999999


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      |+++.++..++|++++++|+|||++++.+...++.
T Consensus       100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  134 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDE  134 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTST
T ss_pred             HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccch
Confidence            99988888999999999999999999998776543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.34  E-value=9.4e-13  Score=116.49  Aligned_cols=99  Identities=6%  Similarity=-0.050  Sum_probs=82.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----------------------CCCceEEeCCCC
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----------------------IPGVTHIGGDMF  214 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----------------------~~ri~~~~~d~~  214 (309)
                      ....+|||+|||+|..+..|++.  +.+ ++++|+ +.+++.+++                       ..+|+++++|++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~--G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~  143 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADR--GHT-VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF  143 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHT--TCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHC--CCe-EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence            35679999999999999999987  457 999998 667776532                       257999999998


Q ss_pred             CC-CC--C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          215 NS-IP--A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       215 ~~-~p--~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +. .+  . .|+|+...++|++++++..++++++++.|+|||++++....
T Consensus       144 ~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~  193 (252)
T 2gb4_A          144 DLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLS  193 (252)
T ss_dssp             TGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             cCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEe
Confidence            75 22  3 49999999999999888889999999999999999765443

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.34  E-value=1.5e-12  Score=116.57  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=90.6

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-~  220 (309)
                      ..+++.++ .....+|||||||+|.++..+++.  +.+ ++++|. +.+++.+++.     .+++++.+|+.+. .+. .
T Consensus       110 ~~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f  185 (286)
T 3m70_A          110 GDVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYD-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENY  185 (286)
T ss_dssp             HHHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCE
T ss_pred             HHHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCc
Confidence            44555554 446789999999999999999988  457 999998 6677766542     3899999999875 333 4


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |+|++..++|++++++..++|+++++.|+|||++++......+
T Consensus       186 D~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  228 (286)
T 3m70_A          186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTD  228 (286)
T ss_dssp             EEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCS
T ss_pred             cEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCC
Confidence            9999999999999988899999999999999998887765544

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.33  E-value=3.3e-12  Score=112.39  Aligned_cols=95  Identities=13%  Similarity=0.142  Sum_probs=80.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCC-CCC--Cceeeehhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNS-IPA--ANAIFMKWV  228 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~-~p~--~D~i~~~~v  228 (309)
                      .....+|||||||+|.++..+++.  ..+ ++++|. +.+++.+++     .++++++.+|+.+. ++.  .|+|++.++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  113 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYR-YIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHL  113 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCE-EEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCc
Confidence            556789999999999999999987  467 999998 667766643     37899999999764 443  399999999


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      +|++++.  .++|++++++|+|||++++.
T Consensus       114 l~~~~~~--~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          114 WHLVPDW--PKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             GGGCTTH--HHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhcCCH--HHHHHHHHHHCCCCcEEEEE
Confidence            9999865  58999999999999999988

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.32  E-value=6.7e-12  Score=106.73  Aligned_cols=106  Identities=11%  Similarity=0.076  Sum_probs=87.8

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC---
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP---  218 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p---  218 (309)
                      ..+++.++ .....+|||||||+|.++..+++.+|..+ ++++|. +.+++.++++      ++++++.+|+.+..+   
T Consensus        30 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  107 (204)
T 3e05_A           30 AVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGR-IFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLP  107 (204)
T ss_dssp             HHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSE-EEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSC
T ss_pred             HHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCC
Confidence            44566664 66778999999999999999999999999 999999 7777777642      689999999977543   


Q ss_pred             CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          219 AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       219 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      ..|+|++...++     +..++++++++.|+|||++++.....
T Consensus       108 ~~D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~  145 (204)
T 3e05_A          108 DPDRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTL  145 (204)
T ss_dssp             CCSEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBH
T ss_pred             CCCEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEeccc
Confidence            359999988775     34689999999999999999976554

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.30  E-value=1.7e-12  Score=116.18  Aligned_cols=104  Identities=19%  Similarity=0.198  Sum_probs=85.2

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC--CC
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI--PA  219 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~--p~  219 (309)
                      .+++.+. . +..+|||||||+|.++..+++.  ..+ ++++|. +.+++.+++.       ++++++.+|+.+..  +.
T Consensus        60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  134 (285)
T 4htf_A           60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQ-VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE  134 (285)
T ss_dssp             HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred             HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence            3455543 2 3579999999999999999988  567 999998 7777777642       68999999997652  33


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                        .|+|++..++|++++.  .++|+++++.|+|||++++.+..
T Consensus       135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~  175 (285)
T 4htf_A          135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYN  175 (285)
T ss_dssp             SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CCceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeC
Confidence              4999999999999876  58999999999999999998754

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.30  E-value=5.3e-12  Score=108.99  Aligned_cols=102  Identities=16%  Similarity=0.113  Sum_probs=84.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----------CCceEEeCCCCCC-CCC--Ccee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----------PGVTHIGGDMFNS-IPA--ANAI  223 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----------~ri~~~~~d~~~~-~p~--~D~i  223 (309)
                      ++..+|||||||+|.++..+++.  +.+ ++++|. +.+++.+++.           .+++++.+|+.+. ++.  .|+|
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  105 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK--GYS-VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA  105 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence            35679999999999999999988  567 999998 6676665431           3689999999764 433  4999


Q ss_pred             eehhhhhcCChh-HHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          224 FMKWVLATWTDD-ECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       224 ~~~~vlh~~~d~-~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      ++..++|++++. +..++|+++++.|+|||++++.+.....
T Consensus       106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  146 (235)
T 3sm3_A          106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNW  146 (235)
T ss_dssp             EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCT
T ss_pred             EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcch
Confidence            999999999764 4678999999999999999999876543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.29  E-value=3.4e-12  Score=105.65  Aligned_cols=105  Identities=18%  Similarity=0.232  Sum_probs=84.0

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCC---
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIP---  218 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p---  218 (309)
                      .+++.++ .....+|||||||+|.++..+++.+|..+ ++++|. +.+++.++++       +++ ++.+|..+.++   
T Consensus        16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~   92 (178)
T 3hm2_A           16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTT-AVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVP   92 (178)
T ss_dssp             HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEE-EEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCC
T ss_pred             HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCe-EEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccC
Confidence            3455554 66678999999999999999999999989 999999 6677776532       378 88898876543   


Q ss_pred             C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          219 A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       219 ~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      + .|+|++...+|+      .++++++++.|+|||++++.+...+.
T Consensus        93 ~~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~~~~~  132 (178)
T 3hm2_A           93 DNPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAVTVES  132 (178)
T ss_dssp             SCCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEECSHHH
T ss_pred             CCCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEeecccc
Confidence            2 599999999986      47899999999999999988765543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.29  E-value=1.7e-11  Score=102.40  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=88.7

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC--Ccee
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA--ANAI  223 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~--~D~i  223 (309)
                      ..++..+  .....+|||||||+|.++..+++.  +.+ ++++|. +.+++.+++. .+++++.+|+.+. .+.  .|+|
T Consensus        37 ~~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i  111 (195)
T 3cgg_A           37 ARLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHD-VLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLI  111 (195)
T ss_dssp             HHHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEE
T ss_pred             HHHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCc-EEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEE
Confidence            3455555  346679999999999999999987  457 999998 6777777653 6799999999874 443  4999


Q ss_pred             eeh-hhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          224 FMK-WVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       224 ~~~-~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      ++. .++|++++++..++|+++++.|+|||++++.....
T Consensus       112 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          112 VSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             EECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             EECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            998 89999988888999999999999999999876543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.28  E-value=2.5e-12  Score=115.35  Aligned_cols=106  Identities=17%  Similarity=0.174  Sum_probs=84.7

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---  216 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---  216 (309)
                      +.+.++ ..+..+|||||||+|.++..+++..+  + ++++|+ +.+++.+++          ..++.+..+|+.+.   
T Consensus        49 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (293)
T 3thr_A           49 LLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGF--S-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  124 (293)
T ss_dssp             HHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCC--e-EEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence            344443 34567999999999999999999854  7 999998 677777643          16788999998652   


Q ss_pred             -CCC--Cceeeeh-hhhhcCCh-----hHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          217 -IPA--ANAIFMK-WVLATWTD-----DECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       217 -~p~--~D~i~~~-~vlh~~~d-----~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                       ++.  .|+|++. +++|++++     ++..++|+++++.|+|||++++..+.
T Consensus       125 ~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          125 VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             SCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence             233  4999998 99999998     67789999999999999999987643

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.27  E-value=7.1e-12  Score=106.67  Aligned_cols=102  Identities=14%  Similarity=0.187  Sum_probs=83.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC--Cceeeehhhhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA--ANAIFMKWVLA  230 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh  230 (309)
                      ....+|||||||+|.++..+++..+. + ++++|. +.+++.+++    .++++++.+|+.+. ++.  .|+|++..++|
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~-v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~  118 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP-N-VTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLD  118 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC-C-EEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC-c-EEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence            45679999999999999999998765 7 999998 667766654    26899999999874 443  49999988887


Q ss_pred             cCC-------------hhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          231 TWT-------------DDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       231 ~~~-------------d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ++.             ..+..++|++++++|+|||++++.++..+
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~  163 (215)
T 2pxx_A          119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP  163 (215)
T ss_dssp             HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred             hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence            655             44668999999999999999999986543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.27  E-value=7.3e-12  Score=108.86  Aligned_cols=93  Identities=25%  Similarity=0.312  Sum_probs=78.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-Cceeeehh-hhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-ANAIFMKW-VLA  230 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-~D~i~~~~-vlh  230 (309)
                      ...+|||||||+|.++..+++.   .+ ++++|. +.+++.+++.     .+++++.+|+.+. .+. .|+|++.. ++|
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~---~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH---YE-VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT---SE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCeEEEecCCCCHHHHHHhhC---Ce-EEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            4579999999999999999887   57 999999 7777777642     5799999998764 444 49999886 999


Q ss_pred             cC-ChhHHHHHHHHHHHhcCCCcEEEE
Q 021707          231 TW-TDDECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       231 ~~-~d~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                      ++ +.++..++|++++++|+|||++++
T Consensus       109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~  135 (243)
T 3d2l_A          109 YLQTEADVKQTFDSAARLLTDGGKLLF  135 (243)
T ss_dssp             GCCSHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hcCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence            88 556778999999999999999887

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.26  E-value=8.4e-12  Score=110.77  Aligned_cols=108  Identities=12%  Similarity=0.072  Sum_probs=82.8

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---CCceEEeCCCCC----CCC
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFN----SIP  218 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~----~~p  218 (309)
                      ....+++.++ .....+|||||||+|.++..++++.  .+ ++++|. +.+++.++++   ..+.....++..    ..+
T Consensus        33 ~~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~-V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~  108 (261)
T 3iv6_A           33 DRENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--AS-VTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELA  108 (261)
T ss_dssp             HHHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGT
T ss_pred             HHHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHhccceeeeeecccccccccC
Confidence            4456677765 6777899999999999999999874  56 999998 7788877653   123333333322    112


Q ss_pred             C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          219 A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       219 ~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      . .|+|++..++|+++.++..++|+++++.| |||++++.-.
T Consensus       109 ~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          109 GHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             TCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             CCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            2 49999999999999888899999999999 9999998754

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.26  E-value=9.9e-12  Score=110.35  Aligned_cols=112  Identities=10%  Similarity=0.103  Sum_probs=88.7

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeechh-------HHhhCCCC-------CCceEEeCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPE-------VVGEAPSI-------PGVTHIGGD-  212 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p~-------~~~~a~~~-------~ri~~~~~d-  212 (309)
                      ..+++.++ .....+|||||||+|.++..+++++ |+.+ ++++|+..       +++.++++       ++++++.+| 
T Consensus        33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~-v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  110 (275)
T 3bkx_A           33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGH-VTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTN  110 (275)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCE-EEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCC
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECCh
Confidence            45666665 6677899999999999999999996 7788 99999943       66665432       589999998 


Q ss_pred             CCCC---CCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          213 MFNS---IPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       213 ~~~~---~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +...   ++.  .|+|++..++|++++.+  .+++.+++.++|||++++.+...+..
T Consensus       111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~  165 (275)
T 3bkx_A          111 LSDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPT  165 (275)
T ss_dssp             TTTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCS
T ss_pred             hhhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCC
Confidence            5432   232  49999999999999875  47777777777899999999887765

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.26  E-value=1.2e-11  Score=108.32  Aligned_cols=106  Identities=16%  Similarity=0.235  Sum_probs=83.8

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-~  220 (309)
                      ..+++... ..+..+|||||||+|.++..+++.  +.+ ++++|. +.+++.++++     .+++++.+|+.+. .+. .
T Consensus        31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f  106 (252)
T 1wzn_A           31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYE-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF  106 (252)
T ss_dssp             HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCc
Confidence            34455443 445679999999999999999987  567 999999 7777776542     4799999999764 444 4


Q ss_pred             ceeeeh-hhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          221 NAIFMK-WVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       221 D~i~~~-~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      |+|++. ..+|+++.++..++|+++++.|+|||.+++.-
T Consensus       107 D~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            999986 56677787888999999999999999988643

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.25  E-value=1.5e-11  Score=105.59  Aligned_cols=106  Identities=19%  Similarity=0.194  Sum_probs=85.1

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC---CCC--C
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS---IPA--A  220 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~---~p~--~  220 (309)
                      ....+++.++  .+..+|||||||+|.++..+++. + .+ ++++|. +.+++.+++.. .+++.+|+.+.   ++.  .
T Consensus        21 ~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~-~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~f   94 (230)
T 3cc8_A           21 VNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TR-VSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQF   94 (230)
T ss_dssp             CCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CE-EEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCE
T ss_pred             HHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-Ce-EEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCcc
Confidence            3455666653  45679999999999999999988 4 77 999998 67777776543 37888998752   333  3


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      |+|++.+++|++++.  .++|+++++.|+|||++++..+.
T Consensus        95 D~v~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           95 DCVIFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             EEEEEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             CEEEECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence            999999999999876  48999999999999999998754

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.24  E-value=8.9e-12  Score=108.30  Aligned_cols=95  Identities=21%  Similarity=0.162  Sum_probs=79.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-Cceeeehh-hhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-ANAIFMKW-VLA  230 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-~D~i~~~~-vlh  230 (309)
                      +..+|||||||+|.++..+++.  ..+ ++++|. +.+++.+++.     .+++++.+|+.+. .+. .|+|++.+ ++|
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~--~~~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~  113 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK--FKN-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG--SSE-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC--CCc-EEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCcccc
Confidence            5679999999999999999988  456 999998 7777777653     2899999999764 444 49999998 999


Q ss_pred             cCCh-hHHHHHHHHHHHhcCCCcEEEEe
Q 021707          231 TWTD-DECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       231 ~~~d-~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ++++ ++..++|++++++|+|||++++.
T Consensus       114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          114 YIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             GCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            9953 67789999999999999999873

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.22  E-value=1.7e-11  Score=104.53  Aligned_cols=101  Identities=16%  Similarity=0.164  Sum_probs=82.3

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCC-ceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC--Cceee
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFI-CEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA--ANAIF  224 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~--~D~i~  224 (309)
                      ++..+.  .+..+|||||||+|.++..+     +. + ++++|. +.+++.++++ ++++++.+|+.+. ++.  .|+|+
T Consensus        29 ~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~  100 (211)
T 2gs9_A           29 ALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQ-KVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL  100 (211)
T ss_dssp             HHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSE-EEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred             HHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence            444442  25679999999999999887     44 6 999998 6777777654 7899999998764 443  39999


Q ss_pred             ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      +.+++|++++.  .++|+++++.|+|||++++.++..
T Consensus       101 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A          101 LFTTLEFVEDV--ERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             EESCTTTCSCH--HHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EcChhhhcCCH--HHHHHHHHHHcCCCCEEEEEecCC
Confidence            99999999865  589999999999999999987654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.22  E-value=6.9e-12  Score=107.55  Aligned_cols=107  Identities=17%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-----CC-C-Cc
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-----IP-A-AN  221 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-----~p-~-~D  221 (309)
                      .+++.+. .....+|||||||+|.++..+++.  +.+ ++++|. +.+++.+++..+++++.+|+.+.     .+ . .|
T Consensus        43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIE-AVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCE-EEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence            3445443 344589999999999999999988  557 999998 77888888778899998887542     22 2 49


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +|++.+++| +.+.  .++|+++++.|+|||++++.++....
T Consensus       119 ~v~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~  157 (227)
T 3e8s_A          119 LICANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWS  157 (227)
T ss_dssp             EEEEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred             EEEECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccc
Confidence            999999999 5554  58999999999999999998875543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.21  E-value=8.5e-12  Score=115.11  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=89.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC-C
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA-A  220 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~-~  220 (309)
                      ...+++.++ .....+|||||||+|.++..+++.+|+.+ ++++|. +.+++.++++     .+++++.+|+++..++ .
T Consensus       185 ~~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~f  262 (343)
T 2pjd_A          185 SQLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIR-LTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRF  262 (343)
T ss_dssp             HHHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCB-CEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCE
T ss_pred             HHHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCe
Confidence            345666664 44457999999999999999999999999 999999 6677776542     3477899999876544 4


Q ss_pred             ceeeehhhhhc---CChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          221 NAIFMKWVLAT---WTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       221 D~i~~~~vlh~---~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      |+|+++.++|+   +..+...++|++++++|+|||+++++...
T Consensus       263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  305 (343)
T 2pjd_A          263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (343)
T ss_dssp             EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred             eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence            99999999986   34556789999999999999999998654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.21  E-value=3.8e-11  Score=100.23  Aligned_cols=109  Identities=11%  Similarity=0.124  Sum_probs=87.0

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------C--CceEEeCCCCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------P--GVTHIGGDMFNSIP  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~--ri~~~~~d~~~~~p  218 (309)
                      ...+++.+. .....+|||+|||+|.++..+++.  ..+ ++++|. +.+++.++++      +  |++++.+|+.+..+
T Consensus        41 ~~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  116 (194)
T 1dus_A           41 TKILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKS-TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK  116 (194)
T ss_dssp             HHHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred             HHHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence            345666664 566789999999999999999988  667 999998 6677666542      3  49999999988754


Q ss_pred             C--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          219 A--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       219 ~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      .  .|+|++...+|+ ..++..++++++++.|+|||++++.....
T Consensus       117 ~~~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          117 DRKYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             TSCEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             cCCceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            4  499999887764 34566799999999999999999987654

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.20  E-value=5.5e-12  Score=113.52  Aligned_cols=98  Identities=13%  Similarity=0.070  Sum_probs=72.9

Q ss_pred             CcceEEEecCCccHHHH----HHHHhcCCCceE--EEeec-hhHHhhCCCC-------CCceE--EeCCCCCC-------
Q 021707          160 GVKRLVDVGGSAGDCLR----MILQKHHFICEG--INFDL-PEVVGEAPSI-------PGVTH--IGGDMFNS-------  216 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~----~l~~~~p~~~~~--~~~D~-p~~~~~a~~~-------~ri~~--~~~d~~~~-------  216 (309)
                      ...+|||||||+|.++.    .++.++|+.+ +  +++|. +.|++.+++.       +++++  ..++..+.       
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~-v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCce-eeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            45799999999997654    4556678875 4  99998 6777766432       34444  45554221       


Q ss_pred             CC-C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          217 IP-A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       217 ~p-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      ++ . .|+|++++++|+++|.  .+.|+++++.|+|||++++.+..
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~  174 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVS  174 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEec
Confidence            12 2 4999999999999987  48999999999999999998643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.20  E-value=2.5e-11  Score=113.41  Aligned_cols=107  Identities=15%  Similarity=0.124  Sum_probs=86.2

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---------CCceEEeCCCCCCCCC
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---------PGVTHIGGDMFNSIPA  219 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---------~ri~~~~~d~~~~~p~  219 (309)
                      .+++.++ .....+|||+|||+|.++..+++.+|..+ ++++|. +.+++.++++         .+++++.+|+++.++.
T Consensus       213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~-V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~  290 (375)
T 4dcm_A          213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  290 (375)
T ss_dssp             HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred             HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCE-EEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence            4566665 44458999999999999999999999999 999998 6777777652         2588899999988664


Q ss_pred             --Cceeeehhhhhc---CChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          220 --ANAIFMKWVLAT---WTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       220 --~D~i~~~~vlh~---~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                        .|+|+++..+|.   .++....++++++++.|+|||+++++.
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence              499999988875   445556789999999999999999964

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.19  E-value=1.9e-11  Score=111.02  Aligned_cols=100  Identities=17%  Similarity=0.187  Sum_probs=80.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------------CCceEEeCCCCCC-----C--
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------------PGVTHIGGDMFNS-----I--  217 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------------~ri~~~~~d~~~~-----~--  217 (309)
                      ....+|||||||+|.++..+++. +..+ ++++|+ +.+++.+++.             .+++++.+|+.+.     +  
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~  110 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG-RINK-LVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD  110 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc-CCCE-EEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence            35679999999999999999874 5667 999998 6677766532             3799999999764     2  


Q ss_pred             CC--CceeeehhhhhcC--ChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          218 PA--ANAIFMKWVLATW--TDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       218 p~--~D~i~~~~vlh~~--~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +.  .|+|++..++|+.  +.++..++|++++++|+|||.+++..+.
T Consensus       111 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (313)
T 3bgv_A          111 PQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN  157 (313)
T ss_dssp             TTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            22  4999999999987  4456789999999999999999987653

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.19  E-value=2.1e-11  Score=109.25  Aligned_cols=101  Identities=17%  Similarity=0.145  Sum_probs=82.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-C-CC--Cceeee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-I-PA--ANAIFM  225 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~-p~--~D~i~~  225 (309)
                      ..+..+|||||||+|.++..+++. +..+ ++++|. +.+++.+++.       .+++++.+|+.+. + +.  .|+|++
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA-GIGE-YYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH-TCSE-EEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEE
Confidence            345679999999999999998776 4557 999998 6777766542       4689999999874 4 33  399999


Q ss_pred             hhhhhc--CChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          226 KWVLAT--WTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       226 ~~vlh~--~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      .+++|+  .+.++..++|+++++.|+|||++++..+.
T Consensus       140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  176 (298)
T 1ri5_A          140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  176 (298)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            999998  56777889999999999999999998754

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.19  E-value=3e-11  Score=100.91  Aligned_cols=103  Identities=16%  Similarity=0.091  Sum_probs=74.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCC---CCCC-Cceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFN---SIPA-ANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~---~~p~-~D~i~~~  226 (309)
                      .....+|||+|||+|.++..+++.  ..+ ++++|. +.+++.++++      ++++++..|...   ..++ .|+|++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKK-VYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence            456689999999999999999988  667 999998 7788777652      789999976644   2233 4999876


Q ss_pred             -hhhhc----C--ChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          227 -WVLAT----W--TDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       227 -~vlh~----~--~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                       ..++.    +  ..++..++|+++++.|+|||++++....-.+
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  140 (185)
T 3mti_A           97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHD  140 (185)
T ss_dssp             EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC----
T ss_pred             CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCC
Confidence             33322    0  2245678999999999999999998654333

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.18  E-value=2.7e-11  Score=103.95  Aligned_cols=103  Identities=9%  Similarity=0.083  Sum_probs=76.0

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhh----CCC------CCCceEEeCCCCCC-CC
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGE----APS------IPGVTHIGGDMFNS-IP  218 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~----a~~------~~ri~~~~~d~~~~-~p  218 (309)
                      .++.++ .....+|||||||+|.++..+++.+|+.+ ++++|. +.+++.    +++      .++++++.+|+.+. ++
T Consensus        19 ~~~~l~-~~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~   96 (218)
T 3mq2_A           19 EFEQLR-SQYDDVVLDVGTGDGKHPYKVARQNPSRL-VVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPL   96 (218)
T ss_dssp             HHHHHH-TTSSEEEEEESCTTCHHHHHHHHHCTTEE-EEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSC
T ss_pred             HHHHhh-ccCCCEEEEecCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCC
Confidence            444443 55678999999999999999999999999 999999 554443    332      25899999999774 33


Q ss_pred             CC-ceeee---hhhh--hcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          219 AA-NAIFM---KWVL--ATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       219 ~~-D~i~~---~~vl--h~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .. |.|++   ...+  |++++.  .++|++++++|+|||++++.
T Consensus        97 ~~~d~v~~~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           97 SGVGELHVLMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             CCEEEEEEESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCEEEEEccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEE
Confidence            22 55552   2222  244444  58999999999999999985

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.18  E-value=8.8e-11  Score=111.17  Aligned_cols=112  Identities=13%  Similarity=0.242  Sum_probs=86.3

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhC-------CC--------CCCceEEeC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEA-------PS--------IPGVTHIGG  211 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a-------~~--------~~ri~~~~~  211 (309)
                      ...+++.+. .....+|||||||+|.++..+++.++..+ ++++|+ +.+++.|       ++        ..+++++.+
T Consensus       231 v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~-V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g  308 (433)
T 1u2z_A          231 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCAL-SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  308 (433)
T ss_dssp             HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence            344566664 66778999999999999999999988778 999998 5555544       32        268999988


Q ss_pred             CCCC-C--C----CCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          212 DMFN-S--I----PAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       212 d~~~-~--~----p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      |.+. .  +    ..+|+|+++++++  . .+..+.|+++.+.|+|||++++.+.+.++.
T Consensus       309 D~~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKpGG~lVi~d~f~p~~  365 (433)
T 1u2z_A          309 KSFVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKVGCKIISLKSLRSLT  365 (433)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             CccccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence            6543 2  1    2359999887773  2 345678999999999999999999887765

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.17  E-value=6e-11  Score=101.87  Aligned_cols=96  Identities=10%  Similarity=0.132  Sum_probs=74.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hh----HHhhCCCCCCceEEeCCCCCC-----CCC-Cceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PE----VVGEAPSIPGVTHIGGDMFNS-----IPA-ANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~----~~~~a~~~~ri~~~~~d~~~~-----~p~-~D~i~~~  226 (309)
                      ..++.+|||||||+|.++..+++..++.+ ++++|. +.    +.+.+++..++.++.+|+.++     .++ .|+|++.
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~-V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSE-EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCE-EEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence            45667999999999999999999988667 999998 44    344454457899999998763     233 4999986


Q ss_pred             hhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          227 WVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      . .+   ..+...+|+++++.|+|||++++.-
T Consensus       134 ~-~~---~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          134 I-AQ---KNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             C-CS---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c-cC---hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            2 22   2344456999999999999999983

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.17  E-value=6.5e-11  Score=100.14  Aligned_cols=107  Identities=13%  Similarity=0.104  Sum_probs=83.2

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-  219 (309)
                      ...++..++   .. +|||||||+|.++..+++.  +.+ ++++|. +.+++.+++.     .+++++.+|+.+. ++. 
T Consensus        21 l~~~~~~~~---~~-~vLdiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~   93 (202)
T 2kw5_A           21 LVSVANQIP---QG-KILCLAEGEGRNACFLASL--GYE-VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVAD   93 (202)
T ss_dssp             HHHHHHHSC---SS-EEEECCCSCTHHHHHHHTT--TCE-EEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTT
T ss_pred             HHHHHHhCC---CC-CEEEECCCCCHhHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcC
Confidence            344454442   34 9999999999999999987  457 999998 6777777653     3899999999775 443 


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                       .|+|++.  +++++.++..++|+++++.|+|||++++.+.....
T Consensus        94 ~fD~v~~~--~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  136 (202)
T 2kw5_A           94 AWEGIVSI--FCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQ  136 (202)
T ss_dssp             TCSEEEEE--CCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred             CccEEEEE--hhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence             4999984  34557777889999999999999999999875443

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.17  E-value=7.1e-11  Score=97.83  Aligned_cols=95  Identities=18%  Similarity=0.191  Sum_probs=78.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCC--CceeeehhhhhcCChh-
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPA--ANAIFMKWVLATWTDD-  235 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~--~D~i~~~~vlh~~~d~-  235 (309)
                      +..+|||+|||+|.++..+++.+   + ++++|. +.+++.   .++++++.+|+.++.+.  .|+|+++..+|..++. 
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~---~-v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~   95 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN---T-VVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP   95 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS---E-EEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred             CCCeEEEeccCccHHHHHHHhcC---c-EEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence            45699999999999999999987   7 999999 667776   57899999999887553  4999998888865543 


Q ss_pred             ------HHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          236 ------ECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       236 ------~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                            +..++++++.+.+ |||++++.+....
T Consensus        96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~  127 (170)
T 3q87_B           96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN  127 (170)
T ss_dssp             TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG
T ss_pred             cccCCcchHHHHHHHHhhC-CCCEEEEEEecCC
Confidence                  4567899999999 9999999875543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.17  E-value=9.2e-11  Score=104.36  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=82.1

Q ss_pred             CcceEEEecCCc--cHHHHHHH-HhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---C--C---C-C
Q 021707          160 GVKRLVDVGGSA--GDCLRMIL-QKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---I--P---A-A  220 (309)
Q Consensus       160 ~~~~vlDvG~G~--G~~~~~l~-~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~--p---~-~  220 (309)
                      +..+|||||||+  +....+++ +..|+.+ ++++|. |.|++.+++.      .+++++.+|+.+.   +  |   . .
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~ar-Vv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~  156 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESR-VVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTL  156 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCE-EEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhccccccccc
Confidence            457899999997  33444444 4679999 999999 8899988652      4699999999774   1  1   1 1


Q ss_pred             c-----eeeehhhhhcCChhH-HHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          221 N-----AIFMKWVLATWTDDE-CKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       221 D-----~i~~~~vlh~~~d~~-~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |     .++++.+||++++.+ ...+|++++++|+|||+|++.+...+.
T Consensus       157 D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~  205 (277)
T 3giw_A          157 DLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEF  205 (277)
T ss_dssp             CTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTT
T ss_pred             CcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence            4     688999999999876 578999999999999999999877654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.17  E-value=1.4e-11  Score=106.43  Aligned_cols=97  Identities=13%  Similarity=0.177  Sum_probs=75.1

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC----CCC-C-ceeeeh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS----IPA-A-NAIFMK  226 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~----~p~-~-D~i~~~  226 (309)
                      ...+|||||||+|.++..+++.+|+.+ ++++|. +.+++.+++      .++++++.+|+.+.    ++. . |.|++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~-v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQD-FLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCe-EEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            457999999999999999999999999 999998 667766543      26799999997653    444 3 888876


Q ss_pred             hhhhcCChh-HH------HHHHHHHHHhcCCCcEEEEec
Q 021707          227 WVLATWTDD-EC------KLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       227 ~vlh~~~d~-~~------~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +... |+.. ..      ..+++++++.|+|||++++..
T Consensus       113 ~~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          113 FPDP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             SCCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            4432 2222 11      259999999999999998864

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.16  E-value=6.6e-11  Score=118.43  Aligned_cols=101  Identities=19%  Similarity=0.219  Sum_probs=84.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC------------CCCceEEeCCCCCC-CCC--Cc
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS------------IPGVTHIGGDMFNS-IPA--AN  221 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~------------~~ri~~~~~d~~~~-~p~--~D  221 (309)
                      .+..+|||||||+|.++..+++.+ |..+ ++++|+ +.+++.+++            .++++++.+|+.+. .+.  .|
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~-VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFD  798 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQT-IIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVD  798 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCE-EEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCee
Confidence            356799999999999999999998 5567 999999 677777644            25799999999875 332  49


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      +|++..++|++++.+..++++++++.|+|| .++|..+..
T Consensus       799 lVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          799 IGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             EEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            999999999999998889999999999999 777766543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.16  E-value=3.8e-11  Score=107.98  Aligned_cols=94  Identities=15%  Similarity=0.169  Sum_probs=77.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--Cceeeehhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--ANAIFMKWV  228 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--~D~i~~~~v  228 (309)
                      ...+.+|||||||+|.++..++.+.++.+ ++++|. |.+++.|+++      ++++++.+|..+. |.  +|+|++...
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~-V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l-~d~~FDvV~~~a~  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMR-VNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI-DGLEFDVLMVAAL  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCE-EEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGG-GGCCCSEEEECTT
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCE-EEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhC-CCCCcCEEEECCC
Confidence            66788999999999988877777778999 999999 7888887753      7899999999763 33  499997654


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                         .++  -.+++++++++|+|||++++.+
T Consensus       198 ---~~d--~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          198 ---AEP--KRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             ---CSC--HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ---ccC--HHHHHHHHHHHcCCCcEEEEEc
Confidence               233  3689999999999999999987

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.16  E-value=3.5e-11  Score=105.91  Aligned_cols=99  Identities=15%  Similarity=0.096  Sum_probs=79.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---CC---CCce
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---IP---AANA  222 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~p---~~D~  222 (309)
                      ..+..+|||||||+|..+..+++.+| +.+ ++++|. +.+++.++++       ++|+++.+|+.+.   .+   ..|+
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~  139 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQ-LLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL  139 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence            34567999999999999999999998 788 999999 7777766542       5899999998653   22   2499


Q ss_pred             eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      |++..     +.......|+++++.|+|||.|++.+....
T Consensus       140 V~~d~-----~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~  174 (248)
T 3tfw_A          140 IFIDA-----DKPNNPHYLRWALRYSRPGTLIIGDNVVRD  174 (248)
T ss_dssp             EEECS-----CGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred             EEECC-----chHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence            98744     344557899999999999999998887765

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.16  E-value=2.4e-11  Score=110.24  Aligned_cols=98  Identities=11%  Similarity=0.101  Sum_probs=74.9

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----C-------CceEEeCCCCC---------CC
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----P-------GVTHIGGDMFN---------SI  217 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~-------ri~~~~~d~~~---------~~  217 (309)
                      ...+|||||||+|..+..+++.. ..+ ++++|+ +.+++.|+++     .       ++++...|+..         +.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~-v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IAL-LVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCe-EEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence            35799999999998776666542 456 999999 7788887653     1       26788888732         23


Q ss_pred             CC--CceeeehhhhhcC-ChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          218 PA--ANAIFMKWVLATW-TDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       218 p~--~D~i~~~~vlh~~-~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      +.  .|+|++..++|+. .+++..++|++++++|+|||++++..+
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            33  4999999999984 544567999999999999999988765

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.15  E-value=5.7e-12  Score=107.16  Aligned_cols=111  Identities=14%  Similarity=0.012  Sum_probs=70.7

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCC----
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIP----  218 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p----  218 (309)
                      ..+++.+....+..+|||+|||+|.++..+++.+|+.+ ++++|. +.+++.++++     .+++++.+|+.++++    
T Consensus        19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~   97 (215)
T 4dzr_A           19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVS-VTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAE   97 (215)
T ss_dssp             HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEE-EEEEECC-------------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhh
Confidence            34455543125678999999999999999999999989 999999 7788888764     168888899876533    


Q ss_pred             --C-Cceeeehhhh------hcCChhHH------------------HHHHHHHHHhcCCCcEEEEeccc
Q 021707          219 --A-ANAIFMKWVL------ATWTDDEC------------------KLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       219 --~-~D~i~~~~vl------h~~~d~~~------------------~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                        . .|+|+++...      +++++...                  .++++++++.|+|||++++.+..
T Consensus        98 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A           98 RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence              3 4999985333      33333222                  68999999999999996666554

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.14  E-value=6.3e-11  Score=102.86  Aligned_cols=106  Identities=11%  Similarity=0.028  Sum_probs=75.0

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech--hHHhhC---CCC------CCceEEeCCCCCCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP--EVVGEA---PSI------PGVTHIGGDMFNSI  217 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p--~~~~~a---~~~------~ri~~~~~d~~~~~  217 (309)
                      ..+.+.+  .....+|||||||+|.++..+++.+|+.+ ++++|++  .+++.|   +++      ++++++.+|+.+. 
T Consensus        15 ~~~~~~~--~~~~~~vLDiGCG~G~~~~~la~~~~~~~-v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-   90 (225)
T 3p2e_A           15 DELTEII--GQFDRVHIDLGTGDGRNIYKLAINDQNTF-YIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-   90 (225)
T ss_dssp             HHHHHHH--TTCSEEEEEETCTTSHHHHHHHHTCTTEE-EEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-
T ss_pred             HHHHHHh--CCCCCEEEEEeccCcHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-
Confidence            3444444  24567999999999999999999999999 9999984  454443   442      6799999998654 


Q ss_pred             CC--CceeeehhhhhcCChh------HHHHHHHHHHHhcCCCcEEEEec
Q 021707          218 PA--ANAIFMKWVLATWTDD------ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       218 p~--~D~i~~~~vlh~~~d~------~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      |.  .|.|.+.++.+.|+..      +...+|++++++|+|||++++..
T Consensus        91 ~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           91 PFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             CGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            43  2544443333333321      11468999999999999999943

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.14  E-value=1.9e-10  Score=99.82  Aligned_cols=94  Identities=17%  Similarity=0.240  Sum_probs=75.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhh----CCCCCCceEEeCCCCC----C-CCC-Cceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGE----APSIPGVTHIGGDMFN----S-IPA-ANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~----a~~~~ri~~~~~d~~~----~-~p~-~D~i~~~  226 (309)
                      .....+|||+|||+|.++..+++.+|..+ ++++|. +.+++.    ++..++++++.+|+.+    . .+. .|+|+  
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGI-VYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE--
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcE-EEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE--
Confidence            55678999999999999999999988777 999998 566644    3445889999999976    2 333 49988  


Q ss_pred             hhhhcCChh-HHHHHHHHHHHhcCCCcEEEEe
Q 021707          227 WVLATWTDD-ECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       227 ~vlh~~~d~-~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                         |++++. +...+|+++++.|+|||++++.
T Consensus       149 ---~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          149 ---EDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             ---ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence               555543 3457799999999999999996

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.14  E-value=9.8e-11  Score=102.84  Aligned_cols=101  Identities=15%  Similarity=0.101  Sum_probs=81.1

Q ss_pred             CcceEEEecCCccHHHHHHHHh--cCCCceEEEeec-hhHHhhCCCC---C-------C---------------------
Q 021707          160 GVKRLVDVGGSAGDCLRMILQK--HHFICEGINFDL-PEVVGEAPSI---P-------G---------------------  205 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~~D~-p~~~~~a~~~---~-------r---------------------  205 (309)
                      ...+|||+|||+|.++..+++.  +|..+ ++++|+ +.+++.++++   .       +                     
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~-v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQ-VIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEE-EEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCe-EEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence            4579999999999999999998  78788 999999 7777776632   2       2                     


Q ss_pred             ----ce-------------EEeCCCCCCC------CC--CceeeehhhhhcCCh-------hHHHHHHHHHHHhcCCCcE
Q 021707          206 ----VT-------------HIGGDMFNSI------PA--ANAIFMKWVLATWTD-------DECKLIMENCYKALLAGGK  253 (309)
Q Consensus       206 ----i~-------------~~~~d~~~~~------p~--~D~i~~~~vlh~~~d-------~~~~~iL~~~~~aL~pgG~  253 (309)
                          ++             ++.+|+++..      +.  .|+|+++..++...+       +...++++++++.|+|||+
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~  209 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAV  209 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCE
T ss_pred             hhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcE
Confidence                77             9999998864      33  499999876665443       5667999999999999999


Q ss_pred             EEEecccc
Q 021707          254 LIACEPVL  261 (309)
Q Consensus       254 l~i~e~~~  261 (309)
                      +++++...
T Consensus       210 l~~~~~~~  217 (250)
T 1o9g_A          210 IAVTDRSR  217 (250)
T ss_dssp             EEEEESSS
T ss_pred             EEEeCcch
Confidence            99865443

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.14  E-value=5.5e-11  Score=102.19  Aligned_cols=97  Identities=13%  Similarity=0.208  Sum_probs=75.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC---CCC--Cceeeehh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS---IPA--ANAIFMKW  227 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~---~p~--~D~i~~~~  227 (309)
                      ...+|||||||+|.++..+++.+|+.+ ++++|. +.+++.+++      .++++++.+|+.+.   ++.  .|.|++.+
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDIN-YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCC-EEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            356899999999999999999999999 999998 677776654      26899999998752   343  38887654


Q ss_pred             hhhcCChh-------HHHHHHHHHHHhcCCCcEEEEec
Q 021707          228 VLATWTDD-------ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       228 vlh~~~d~-------~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      ... |+..       ...++|+++++.|+|||.+++..
T Consensus       117 ~~p-~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          117 SDP-WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             CCC-CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             CCC-CcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            322 2211       02578999999999999998863

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.13  E-value=1.4e-11  Score=107.24  Aligned_cols=100  Identities=16%  Similarity=0.215  Sum_probs=77.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC---CCC--Cceeee-h
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS---IPA--ANAIFM-K  226 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~---~p~--~D~i~~-~  226 (309)
                      ....+|||||||+|.++..+++..+. + ++++|. +.+++.++++     .+++++.+|+.+.   ++.  .|+|++ .
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~-~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~  136 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-E-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEE-E-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCC-e-EEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECC
Confidence            35679999999999999999765443 6 999998 6777776542     6799999998653   443  499998 5


Q ss_pred             hh--hhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          227 WV--LATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       227 ~v--lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +.  .+++...+...+|+++++.|+|||++++.+..
T Consensus       137 ~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          137 YPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             cccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            54  44555555668899999999999999998754

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.13  E-value=1.5e-10  Score=98.77  Aligned_cols=101  Identities=15%  Similarity=0.173  Sum_probs=79.6

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------C-CceEEeCCCCCC---CC
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------P-GVTHIGGDMFNS---IP  218 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~-ri~~~~~d~~~~---~p  218 (309)
                      .++..++ .....+|||||||+|.++..+++.  ..+ ++++|. +.+++.++++      + +++++.+|+.+.   .+
T Consensus        46 ~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~  121 (204)
T 3njr_A           46 LTLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGR-AITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP  121 (204)
T ss_dssp             HHHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred             HHHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence            3455554 666789999999999999999988  677 999998 7777776642      4 899999999874   23


Q ss_pred             CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          219 AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       219 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      ..|+|++...+    +  .. +++++++.|+|||++++.....
T Consensus       122 ~~D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~  157 (204)
T 3njr_A          122 LPEAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL  157 (204)
T ss_dssp             CCSEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred             CCCEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc
Confidence            45999977643    2  23 9999999999999999876543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.13  E-value=5.9e-11  Score=105.91  Aligned_cols=103  Identities=14%  Similarity=0.101  Sum_probs=80.5

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC-
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA-  219 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~-  219 (309)
                      .+++.++ .....+|||+|||+|.++..+++. +|..+ ++++|. +.+++.+++       .++++++.+|+.+.++. 
T Consensus       101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  178 (275)
T 1yb2_A          101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ  178 (275)
T ss_dssp             -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSE-EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred             HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence            4555554 667789999999999999999998 78888 999999 667766543       25899999999887654 


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                       .|+|++     ++++.  .++|+++++.|+|||++++..+..
T Consensus       179 ~fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~  214 (275)
T 1yb2_A          179 MYDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNF  214 (275)
T ss_dssp             CEEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             CccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCH
Confidence             499998     44544  489999999999999999987544

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.13  E-value=1.4e-10  Score=99.38  Aligned_cols=96  Identities=16%  Similarity=0.237  Sum_probs=76.2

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCC--Cceeeehh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPA--ANAIFMKW  227 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~--~D~i~~~~  227 (309)
                      ...+|||||||+|.++..+++.+|+.+ ++++|. +.+++.++++      ++++++.+|+.+.   ++.  .|+|++.+
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~  119 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDIN-YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  119 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCC-EEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence            356899999999999999999999999 999998 6777776542      6899999999762   333  49999875


Q ss_pred             hhhcCChh-------HHHHHHHHHHHhcCCCcEEEEe
Q 021707          228 VLATWTDD-------ECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       228 vlh~~~d~-------~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ..+ |+..       ...++|+++++.|+|||.+++.
T Consensus       120 ~~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          120 SDP-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             CCC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             CCC-ccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            432 2211       1257999999999999999885

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.13  E-value=1.1e-11  Score=108.43  Aligned_cols=97  Identities=14%  Similarity=0.121  Sum_probs=75.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCC---CCCC--Cceee---
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFN---SIPA--ANAIF---  224 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~---~~p~--~D~i~---  224 (309)
                      ..+.+|||||||+|..+..+++..|. + ++++|+ |.+++.+++     ..+++++.+|...   .++.  .|.|+   
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~-v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~  136 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-E-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT  136 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE-E-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc-E-EEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEee
Confidence            45689999999999999999988774 6 899998 788888764     2568888888643   2443  36665   


Q ss_pred             --ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          225 --MKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       225 --~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                        ..+.++++++.  ..++++++++|||||++++.+.
T Consensus       137 ~~~~~~~~~~~~~--~~~~~e~~rvLkPGG~l~f~~~  171 (236)
T 3orh_A          137 YPLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             CCCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCH
T ss_pred             eecccchhhhcch--hhhhhhhhheeCCCCEEEEEec
Confidence              45666666655  5899999999999999998763

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.13  E-value=3.6e-11  Score=105.69  Aligned_cols=104  Identities=15%  Similarity=0.187  Sum_probs=84.5

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~  219 (309)
                      ..++..++ .....+|||+|||+|.++..+++. .|..+ ++++|. +.+++.++++       ++++++.+|+.+.++.
T Consensus        83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  160 (255)
T 3mb5_A           83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGR-VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEE  160 (255)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCC
T ss_pred             HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeE-EEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCC
Confidence            34556664 667789999999999999999999 78889 999999 6777777652       5699999999877665


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                        .|+|++     ++++.  .++|+++++.|+|||++++..+..
T Consensus       161 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~  197 (255)
T 3mb5_A          161 ENVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYTPCS  197 (255)
T ss_dssp             CSEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CCcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEECCH
Confidence              499987     34544  478999999999999999987544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.12  E-value=5.5e-11  Score=114.44  Aligned_cols=106  Identities=14%  Similarity=0.074  Sum_probs=85.8

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCC-CCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNS-IPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~-~p~  219 (309)
                      .+.+++.++ ..+..+|||||||+|.++..+++ .+..+ ++++|.+.+++.+++.       ++|+++.+|+.+. .|+
T Consensus       147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~-V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~  223 (480)
T 3b3j_A          147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPE  223 (480)
T ss_dssp             HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSS
T ss_pred             HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCE-EEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCC
Confidence            344556554 45567999999999999998887 56778 9999997677666531       7899999999873 555


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEE
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                       .|+|++...+|++.+++..+.+.++++.|+|||++++
T Consensus       224 ~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          224 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             CEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             CeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence             4999998888888877778889999999999999884

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.12  E-value=3.7e-11  Score=111.05  Aligned_cols=105  Identities=14%  Similarity=0.078  Sum_probs=83.9

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCC-CCC-C
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNS-IPA-A  220 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~-~p~-~  220 (309)
                      .+++.+. ..+..+|||||||+|.++..+++. +..+ ++++|.+++++.+++.       ++++++.+|+.+. .|+ .
T Consensus        41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~  117 (348)
T 2y1w_A           41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV  117 (348)
T ss_dssp             HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred             HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCE-EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence            3455554 445679999999999999998876 5567 9999996666655431       6899999999874 454 4


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      |+|++...++++..+...+.+.++++.|+|||++++.
T Consensus       118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          118 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             eEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            9999998888888777788899999999999998844

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.12  E-value=1.3e-10  Score=99.25  Aligned_cols=99  Identities=16%  Similarity=0.079  Sum_probs=76.7

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCC-CCC--Cceee
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIF  224 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~  224 (309)
                      ...+++.+.......+|||||||+|.++..+.     .+ ++++|....        +++++.+|+.+. ++.  .|+|+
T Consensus        55 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~-v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~  120 (215)
T 2zfu_A           55 VDRIARDLRQRPASLVVADFGCGDCRLASSIR-----NP-VHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAV  120 (215)
T ss_dssp             HHHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SC-EEEEESSCS--------STTEEESCTTSCSCCTTCEEEEE
T ss_pred             HHHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----cc-EEEEeCCCC--------CceEEEeccccCCCCCCCEeEEE
Confidence            34455554324456799999999999998873     46 999998543        788999999774 443  39999


Q ss_pred             ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +.+++| +++  ..++|+++++.|+|||++++.+.....
T Consensus       121 ~~~~l~-~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~  156 (215)
T 2zfu_A          121 FCLSLM-GTN--IRDFLEEANRVLKPGGLLKVAEVSSRF  156 (215)
T ss_dssp             EESCCC-SSC--HHHHHHHHHHHEEEEEEEEEEECGGGC
T ss_pred             Eehhcc-ccC--HHHHHHHHHHhCCCCeEEEEEEcCCCC
Confidence            999998 443  468999999999999999999876543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.11  E-value=1.1e-10  Score=100.41  Aligned_cols=91  Identities=21%  Similarity=0.188  Sum_probs=76.2

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--CceeeehhhhhcCChhH
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWTDDE  236 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~d~~  236 (309)
                      ..+|||||||+|.++..+++.       +++|. +.+++.+++. +++++.+|+.+. .+.  .|+|++.+++|++++. 
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-  118 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-  118 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH-
Confidence            679999999999999988654       78888 6777777665 899999998664 433  4999999999999766 


Q ss_pred             HHHHHHHHHHhcCCCcEEEEecccc
Q 021707          237 CKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       237 ~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                       .++|++++++|+|||++++.++..
T Consensus       119 -~~~l~~~~~~L~pgG~l~i~~~~~  142 (219)
T 1vlm_A          119 -ERALKEAYRILKKGGYLIVGIVDR  142 (219)
T ss_dssp             -HHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             -HHHHHHHHHHcCCCcEEEEEEeCC
Confidence             589999999999999999987643

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.11  E-value=9.1e-12  Score=110.50  Aligned_cols=100  Identities=15%  Similarity=0.099  Sum_probs=75.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----------------------------------
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----------------------------------  203 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----------------------------------  203 (309)
                      .++.+|||||||+|.++..++.... .+ ++++|. +.+++.++++                                  
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~-v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSF-QD-ITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhh-cc-eeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            3567999999999988776554432 25 999998 6777765431                                  


Q ss_pred             -CCce-EEeCCCCCCC-------CCCceeeehhhhhcC-C-hhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          204 -PGVT-HIGGDMFNSI-------PAANAIFMKWVLATW-T-DDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       204 -~ri~-~~~~d~~~~~-------p~~D~i~~~~vlh~~-~-d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                       .++. ++.+|+.+..       +..|+|+++.+||+. + .++..++|++++++|||||++++.+..
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence             1233 8899998741       224999999999985 3 256678999999999999999999754

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.11  E-value=1.9e-11  Score=102.70  Aligned_cols=95  Identities=12%  Similarity=0.085  Sum_probs=77.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCC-Cceeeehhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPA-ANAIFMKWV  228 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~-~D~i~~~~v  228 (309)
                      ....+|||+|||+|.++..+....|+++ +++.|. +.+++.++++       .++++  .|..+. .+. +|+|+...+
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~-~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~  124 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKII-YHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM  124 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCE-EEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence            3568999999999999999999999998 999999 7788877653       24555  566544 333 499999999


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +|.+ ++ ....+.+++++|+|||.++-.+
T Consensus       125 LHlL-~~-~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          125 LPVL-KQ-QDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             HHHH-HH-TTCCHHHHHHTCEEEEEEEEEE
T ss_pred             HHhh-hh-hHHHHHHHHHHhCCCCEEEEeC
Confidence            9999 33 3566779999999999888887

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.10  E-value=9.2e-11  Score=103.55  Aligned_cols=97  Identities=15%  Similarity=0.175  Sum_probs=75.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--CceeeehhhhhcCChh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWTDD  235 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~d~  235 (309)
                      ...+|||||||+|.++..+++.  ..+ ++++|. +.+++.+++...-.++.+|+.+. ++.  .|+|++..+++++.++
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~  130 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFE-VVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN  130 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCe-EEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc
Confidence            5679999999999999999987  457 999998 67777776432223888898764 443  3999998766655332


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          236 ECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       236 ~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                       ..++|+++++.|+|||++++..+.
T Consensus       131 -~~~~l~~~~~~LkpgG~l~~~~~~  154 (260)
T 2avn_A          131 -KDKAFSEIRRVLVPDGLLIATVDN  154 (260)
T ss_dssp             -HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             -HHHHHHHHHHHcCCCeEEEEEeCC
Confidence             579999999999999999987654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.10  E-value=1.5e-11  Score=108.28  Aligned_cols=100  Identities=17%  Similarity=0.155  Sum_probs=79.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----C-----------------------------
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----P-----------------------------  204 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----~-----------------------------  204 (309)
                      .+..+|||||||+|.++..+++..+ .+ ++++|. +.+++.+++.    .                             
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TE-IIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-Ce-EEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            4567999999999999999988766 46 999998 6677766431    1                             


Q ss_pred             --Cc-eEEeCCCCCCC--C----C-CceeeehhhhhcCChh--HHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          205 --GV-THIGGDMFNSI--P----A-ANAIFMKWVLATWTDD--ECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       205 --ri-~~~~~d~~~~~--p----~-~D~i~~~~vlh~~~d~--~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                        ++ +++.+|+.+..  +    . .|+|++..++|++++.  +..++|+++++.|+|||++++.+..
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence              27 99999998742  2    3 4999999999955432  5679999999999999999998854

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.10  E-value=1.3e-10  Score=103.64  Aligned_cols=107  Identities=19%  Similarity=0.189  Sum_probs=83.2

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC-C-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP-A-  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p-~-  219 (309)
                      ..+++.++  .+..+|||||||+|.++..+++.+|+.+ ++++|. +.+++.++++      ++++++.+|+++..+ . 
T Consensus       100 ~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~  176 (276)
T 2b3t_A          100 EQALARLP--EQPCRILDLGTGTGAIALALASERPDCE-IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQ  176 (276)
T ss_dssp             HHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCC
T ss_pred             HHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCC
Confidence            34444442  3457999999999999999999999999 999998 6777776643      579999999988653 3 


Q ss_pred             Cceeeeh-------------hhhhcCCh----------hHHHHHHHHHHHhcCCCcEEEEec
Q 021707          220 ANAIFMK-------------WVLATWTD----------DECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       220 ~D~i~~~-------------~vlh~~~d----------~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      .|+|+++             .++++.|.          +...++++++++.|+|||++++..
T Consensus       177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~  238 (276)
T 2b3t_A          177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH  238 (276)
T ss_dssp             EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            4999987             34444332          345789999999999999998863

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.09  E-value=8.6e-11  Score=99.08  Aligned_cols=106  Identities=15%  Similarity=0.114  Sum_probs=81.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---CCC-Cceee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---IPA-ANAIF  224 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~p~-~D~i~  224 (309)
                      .....+|||+|||+|.++..+++.+ |..+ ++++|. +.+++.++++       ++++++.+|+.+.   .++ .|+|+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGR-VFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCE-EEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            4456799999999999999999987 6778 999998 6777777643       6899999997653   233 49999


Q ss_pred             ehhhhhc-------CChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          225 MKWVLAT-------WTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       225 ~~~vlh~-------~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +...+..       ...++..++++++++.|+|||++++......+.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~  145 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDT  145 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTT
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCCCC
Confidence            7764411       123345679999999999999999987554433

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.09  E-value=3.7e-11  Score=102.07  Aligned_cols=92  Identities=11%  Similarity=0.021  Sum_probs=75.2

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--Cceeeehhhhhc
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--ANAIFMKWVLAT  231 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--~D~i~~~~vlh~  231 (309)
                      ..+|||||||+|.++..+++.+|+.+ ++++|. +.+++.++++      ++++++.+|+.+..+.  .|+|++..+   
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~---  141 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAH-FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF---  141 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc---
Confidence            57999999999999999999999999 999998 6677666542      4599999999876433  499997542   


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                       .+  ..++++++++.|+|||++++...
T Consensus       142 -~~--~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          142 -AS--LNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             -SS--HHHHHHHHTTSEEEEEEEEEEES
T ss_pred             -CC--HHHHHHHHHHhcCCCcEEEEEeC
Confidence             22  35899999999999999998754

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.08  E-value=1.7e-10  Score=100.87  Aligned_cols=98  Identities=9%  Similarity=0.136  Sum_probs=72.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------------CCCCceEEeCCCCCC----CCC-C
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------------SIPGVTHIGGDMFNS----IPA-A  220 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------------~~~ri~~~~~d~~~~----~p~-~  220 (309)
                      .+..+|||||||+|.++..+++.+|+.+ ++++|. +.+++.++            ...+|+++.+|+.+.    ++. .
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTL-ILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSE-EEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence            4467899999999999999999999999 999999 66665442            236899999999763    333 3


Q ss_pred             -ceeeehhhhhcCChh---H----HHHHHHHHHHhcCCCcEEEEec
Q 021707          221 -NAIFMKWVLATWTDD---E----CKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       221 -D~i~~~~vlh~~~d~---~----~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                       |.|++.+.-. |...   .    ...+|++++++|+|||.|++..
T Consensus       124 ~D~v~~~~~dp-~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t  168 (235)
T 3ckk_A          124 LTKMFFLFPDP-HFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT  168 (235)
T ss_dssp             EEEEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEEeCCCc-hhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence             8887643321 2110   0    1379999999999999998863

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.08  E-value=1.3e-10  Score=99.00  Aligned_cols=100  Identities=14%  Similarity=0.138  Sum_probs=80.8

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCCC--
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIPA--  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p~--  219 (309)
                      ..+++.++ ..+..+|||||||+|.++..+++.  ..+ ++++|. +.+++.+++      .++++++.+|..+..+.  
T Consensus        67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  142 (210)
T 3lbf_A           67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQH-VCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARA  142 (210)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCC
Confidence            44556664 667789999999999999999998  566 999998 677776654      25799999999876432  


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                       .|+|++..++|++++        ++++.|+|||++++.-..
T Consensus       143 ~~D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          143 PFDAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CEEEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred             CccEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence             499999999999886        478899999999987554

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.07  E-value=6e-11  Score=100.77  Aligned_cols=97  Identities=12%  Similarity=0.044  Sum_probs=78.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC-Cceeeehhhhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA-ANAIFMKWVLA  230 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~-~D~i~~~~vlh  230 (309)
                      ....+|||||||+|.++..+++ .+..+ ++++|. +.+++.++++      .+++++.+|+.+..++ .|+|++...+|
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~  136 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHK-LGAKS-VLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE  136 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHH-TTCSE-EEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred             cCCCEEEEECCCCCHHHHHHHH-CCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence            3567999999999999999776 46667 999998 7777776542      3499999999876555 49999988776


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      +     ..++++++++.|+|||++++.+....
T Consensus       137 ~-----~~~~l~~~~~~L~~gG~l~~~~~~~~  163 (205)
T 3grz_A          137 I-----LLDLIPQLDSHLNEDGQVIFSGIDYL  163 (205)
T ss_dssp             H-----HHHHGGGSGGGEEEEEEEEEEEEEGG
T ss_pred             H-----HHHHHHHHHHhcCCCCEEEEEecCcc
Confidence            4     36889999999999999999776654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.07  E-value=5.6e-10  Score=94.24  Aligned_cols=103  Identities=20%  Similarity=0.191  Sum_probs=77.6

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcC--CCceEEEeechhHHhhCCCCCCceEEeCCCCCCC-----------
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH--FICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSI-----------  217 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~-----------  217 (309)
                      +.+.+..+....+|||||||+|.++..+++++|  +.+ ++++|+.++    ...++++++.+|+.+..           
T Consensus        13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~-v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           13 LDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNK-IIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             HHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEE-EEEEESSCC----CCCTTCEEEECCTTTTSSCCC-------
T ss_pred             HHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCce-EEEEeCCcc----CCCCCceEEEccccchhhhhhccccccc
Confidence            444553245668999999999999999999998  678 999999663    12468999999997643           


Q ss_pred             ---------------CC--CceeeehhhhhcCC----hhH-----HHHHHHHHHHhcCCCcEEEEec
Q 021707          218 ---------------PA--ANAIFMKWVLATWT----DDE-----CKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       218 ---------------p~--~D~i~~~~vlh~~~----d~~-----~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                                     +.  .|+|++...+|...    +..     ..++|+++++.|+|||++++..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM  154 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence                           32  49999887766532    211     2358999999999999998754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.07  E-value=3.3e-10  Score=92.77  Aligned_cols=108  Identities=19%  Similarity=0.210  Sum_probs=83.0

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeechhHHhhCCCCCCceEEeCCCCCC---------CCC
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS---------IPA  219 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~---------~p~  219 (309)
                      .+++.+.......+|||+|||+|.++..+++.+ |+.+ ++++|...++.    .++++++.+|+.+.         ++.
T Consensus        12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T 1ej0_A           12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR-IIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCE-EEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCe-EEEEECccccc----cCcEEEEEcccccchhhhhhhccCCC
Confidence            344444323456799999999999999999995 7788 99999966322    27899999999764         343


Q ss_pred             --CceeeehhhhhcCChhH---------HHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          220 --ANAIFMKWVLATWTDDE---------CKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~---------~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                        .|+|++...+|......         ..++++++++.|+|||++++.....+
T Consensus        87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  140 (180)
T 1ej0_A           87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE  140 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred             CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence              49999988888665431         15899999999999999998776443

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.07  E-value=2.5e-10  Score=100.20  Aligned_cols=103  Identities=13%  Similarity=0.187  Sum_probs=83.4

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CCC
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IPA  219 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p~  219 (309)
                      .++..++ .....+|||+|||+|.++..+++. .|..+ ++++|. +.+++.+++       .++++++.+|+.+. ++.
T Consensus        87 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  164 (258)
T 2pwy_A           87 AMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGL-VESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE  164 (258)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred             HHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence            4666665 777789999999999999999999 67888 999998 677766653       26899999999876 554


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                        .|+|++     ++++.  .++|++++++|+|||++++..+..
T Consensus       165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~  201 (258)
T 2pwy_A          165 AAYDGVAL-----DLMEP--WKVLEKAALALKPDRFLVAYLPNI  201 (258)
T ss_dssp             TCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESCH
T ss_pred             CCcCEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeCCH
Confidence              499997     34544  378999999999999999988543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.07  E-value=1.7e-10  Score=98.69  Aligned_cols=100  Identities=16%  Similarity=0.150  Sum_probs=81.3

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC-C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP-A  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p-~  219 (309)
                      ..+++.+. .....+|||||||+|.++..+++.. |+.+ ++++|. +.+++.++++      ++++++.+|+....+ .
T Consensus        67 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  144 (215)
T 2yxe_A           67 GMMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGL-VVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPL  144 (215)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGG
T ss_pred             HHHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCC
Confidence            34555554 5667899999999999999999998 6678 999998 6777776542      579999999876654 2


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                        .|+|++..++|++++        ++++.|+|||++++.-
T Consensus       145 ~~fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          145 APYDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             CCEEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred             CCeeEEEECCchHHHHH--------HHHHHcCCCcEEEEEE
Confidence              499999999998873        6889999999999874

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.05  E-value=1.9e-10  Score=100.89  Aligned_cols=94  Identities=12%  Similarity=0.223  Sum_probs=71.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC--------------CCCCceEEeCCCCCCCC----
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP--------------SIPGVTHIGGDMFNSIP----  218 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~--------------~~~ri~~~~~d~~~~~p----  218 (309)
                      ..+..+|||||||+|.++..+++.+|+.+ ++++|. +.+++.++              ..++++++.+|+++.++    
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~  125 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAFPEDL-ILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE  125 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHSTTSE-EEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCCCC-EEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence            34567999999999999999999999999 999998 56665442              22689999999987433    


Q ss_pred             C--CceeeehhhhhcCChhH-----------HHHHHHHHHHhcCCCcEEEEe
Q 021707          219 A--ANAIFMKWVLATWTDDE-----------CKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       219 ~--~D~i~~~~vlh~~~d~~-----------~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .  .|.|++.     +++..           ..++++++.+.|+|||+|++.
T Consensus       126 ~~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          126 KGQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             TTCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence            2  2666532     23321           147999999999999999985

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.05  E-value=8.9e-11  Score=102.14  Aligned_cols=99  Identities=16%  Similarity=0.170  Sum_probs=80.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCC----C-Cceeee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIP----A-ANAIFM  225 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p----~-~D~i~~  225 (309)
                      .+..+|||||||+|..+..+++.+|..+ ++++|. +.+++.++++       ++++++.+|+.+..|    . .|+|++
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  148 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIH-VTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI  148 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence            4567999999999999999999889888 999998 7777776542       589999999987644    3 499986


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      ...     ......+++++++.|+|||+|++.+.+++.
T Consensus       149 ~~~-----~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g  181 (232)
T 3ntv_A          149 DAA-----KAQSKKFFEIYTPLLKHQGLVITDNVLYHG  181 (232)
T ss_dssp             ETT-----SSSHHHHHHHHGGGEEEEEEEEEECTTGGG
T ss_pred             cCc-----HHHHHHHHHHHHHhcCCCeEEEEeeCCcCc
Confidence            532     334568999999999999999887776653

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.05  E-value=3.8e-10  Score=98.57  Aligned_cols=93  Identities=18%  Similarity=0.118  Sum_probs=75.8

Q ss_pred             cceEEEecCCccHHHHHHHHh----cCCCceEEEeec-hhHHhhCCC-CCCceEEeCCCCCC--C---CC--Cceeeehh
Q 021707          161 VKRLVDVGGSAGDCLRMILQK----HHFICEGINFDL-PEVVGEAPS-IPGVTHIGGDMFNS--I---PA--ANAIFMKW  227 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~~D~-p~~~~~a~~-~~ri~~~~~d~~~~--~---p~--~D~i~~~~  227 (309)
                      ..+|||||||+|..+..+++.    +|+.+ ++++|. +.+++.++. .++|+++.+|+.+.  +   +.  .|+|++..
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~-V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQ-VIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCE-EEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCE-EEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            469999999999999999998    78889 999998 677777754 37899999999873  2   22  49988755


Q ss_pred             hhhcCChhHHHHHHHHHHH-hcCCCcEEEEecc
Q 021707          228 VLATWTDDECKLIMENCYK-ALLAGGKLIACEP  259 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~-aL~pgG~l~i~e~  259 (309)
                      . |.    +..++|+++++ .|+|||++++.+.
T Consensus       161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            4 42    34689999997 9999999999875

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.04  E-value=1.2e-10  Score=100.24  Aligned_cols=98  Identities=15%  Similarity=0.102  Sum_probs=79.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCC--------CCCc
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSI--------PAAN  221 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~--------p~~D  221 (309)
                      .+..+|||||||+|..+..+++.+| +.+ ++++|. +.+++.+++       .++++++.+|+.+..        ...|
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGR-VVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            3567999999999999999999998 778 999998 777776653       257999999986532        1259


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      +|++...     ......+++++.+.|+|||.+++.+..++
T Consensus       136 ~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  171 (223)
T 3duw_A          136 FIFIDAD-----KQNNPAYFEWALKLSRPGTVIIGDNVVRE  171 (223)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred             EEEEcCC-----cHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            9987543     33456899999999999999998887765

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.04  E-value=4.1e-11  Score=107.47  Aligned_cols=99  Identities=16%  Similarity=0.163  Sum_probs=72.9

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------------C--------------------
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------------P--------------------  204 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------------~--------------------  204 (309)
                      ...+|||||||+|.++ .++...+..+ ++++|+ +.+++.+++.              .                    
T Consensus        71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQ-LLSACSHFED-ITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGG-GTTGGGGCSE-EEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHH-HHhhccCCCe-EEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            4579999999999944 3444444557 999998 6677655431              0                    


Q ss_pred             --CceEEeCCCCCC-------CCC--CceeeehhhhhcCChh--HHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          205 --GVTHIGGDMFNS-------IPA--ANAIFMKWVLATWTDD--ECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       205 --ri~~~~~d~~~~-------~p~--~D~i~~~~vlh~~~d~--~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                        .++++.+|+.+.       ++.  .|+|++..++|++++.  +..++|++++++|+|||+|++.+..
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~  217 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL  217 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence              145666788762       222  4999999999985543  5679999999999999999998643

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.04  E-value=3.2e-10  Score=95.11  Aligned_cols=101  Identities=8%  Similarity=-0.043  Sum_probs=79.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---C-CC-Cceeeehh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---I-PA-ANAIFMKW  227 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~-p~-~D~i~~~~  227 (309)
                      ...+|||+|||+|.++..+++. +..+ ++++|. +.+++.++++      ++++++.+|+.+.   . ++ .|+|++..
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSR-GAAS-VLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TCSE-EEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHC-CCCe-EEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence            4579999999999999988774 4556 999998 7788777653      5899999998764   2 23 49999987


Q ss_pred             hhhcCChhHHHHHHHHHHH--hcCCCcEEEEeccccCC
Q 021707          228 VLATWTDDECKLIMENCYK--ALLAGGKLIACEPVLLD  263 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~--aL~pgG~l~i~e~~~~~  263 (309)
                      .+|.. .++..++++++.+  .|+|||++++.......
T Consensus       122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~~  158 (189)
T 3p9n_A          122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATTCA  158 (189)
T ss_dssp             CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETTSC
T ss_pred             CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCCCC
Confidence            76543 3556799999999  99999999987665443

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.02  E-value=1.2e-10  Score=100.46  Aligned_cols=101  Identities=15%  Similarity=0.257  Sum_probs=79.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---CC------CC
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---IP------AA  220 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~p------~~  220 (309)
                      .+..+|||||||+|..+..+++..+ +.+ ++++|. +.+++.++++       ++|+++.+|+.+.   .+      ..
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGAR-LLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  135 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence            3467999999999999999999875 778 999998 7778777652       5799999997442   32      25


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |+|++....|.+.+.  .++++.+ +.|+|||.+++.+...+.
T Consensus       136 D~V~~d~~~~~~~~~--~~~~~~~-~~LkpgG~lv~~~~~~~~  175 (221)
T 3u81_A          136 DMVFLDHWKDRYLPD--TLLLEKC-GLLRKGTVLLADNVIVPG  175 (221)
T ss_dssp             SEEEECSCGGGHHHH--HHHHHHT-TCCCTTCEEEESCCCCCC
T ss_pred             EEEEEcCCcccchHH--HHHHHhc-cccCCCeEEEEeCCCCcc
Confidence            999998877766433  4678877 999999999888877554

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.02  E-value=2.7e-10  Score=99.08  Aligned_cols=102  Identities=23%  Similarity=0.211  Sum_probs=81.8

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA  219 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~  219 (309)
                      ....+++.++ .....+|||||||+|.++..+++..+ .+ ++++|. +.+++.++++      ++++++.+|+...++.
T Consensus        79 ~~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~  155 (235)
T 1jg1_A           79 MVAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TD-VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP  155 (235)
T ss_dssp             HHHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             HHHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC
Confidence            3445666665 66778999999999999999999998 77 999997 6777766542      5699999998555543


Q ss_pred             ---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          220 ---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       220 ---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                         .|+|++..+++++++        ++.+.|+|||++++.-.
T Consensus       156 ~~~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          156 KAPYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             GCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred             CCCccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence               499999999998875        57889999999998643

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.02  E-value=1.6e-10  Score=109.04  Aligned_cols=106  Identities=18%  Similarity=0.203  Sum_probs=81.4

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC----C--C-C
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS----I--P-A  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~----~--p-~  219 (309)
                      ...+++.+. .....+|||||||+|.++..++++.  .+ ++++|. +.+++.+++. .+......+...    +  + +
T Consensus        96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~-v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~  170 (416)
T 4e2x_A           96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VR-HLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG  170 (416)
T ss_dssp             HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CE-EEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred             HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--Cc-EEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence            456677775 6677899999999999999999874  46 999999 6788877765 344443222111    1  1 2


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                       .|+|++.+++|++++.  ..+|+++++.|+|||++++..+.
T Consensus       171 ~fD~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          171 PANVIYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             CEEEEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CEEEEEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCC
Confidence             4999999999999865  68999999999999999997543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.01  E-value=4.7e-10  Score=97.33  Aligned_cols=95  Identities=14%  Similarity=0.176  Sum_probs=74.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hh----HHhhCCCCCCceEEeCCCCCC--C---CC-Cceeee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PE----VVGEAPSIPGVTHIGGDMFNS--I---PA-ANAIFM  225 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~----~~~~a~~~~ri~~~~~d~~~~--~---p~-~D~i~~  225 (309)
                      .....+|||+|||+|.++..+++.+ |..+ ++++|. +.    +++.+++.++++++.+|+.+.  +   +. .|+|++
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~-v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGL-VYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            4567799999999999999999997 7788 999998 33    445555558999999999873  2   22 499998


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ...    ..+....+++++++.|+|||++++.
T Consensus       154 ~~~----~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          154 DVA----QPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             CCC----CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCC----CccHHHHHHHHHHHHcCCCeEEEEE
Confidence            443    3334467799999999999999984

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.01  E-value=9.5e-10  Score=94.86  Aligned_cols=95  Identities=17%  Similarity=0.187  Sum_probs=72.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHh----hCCCCCCceEEeCCCCCC-----CCC-Cceeee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVG----EAPSIPGVTHIGGDMFNS-----IPA-ANAIFM  225 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~----~a~~~~ri~~~~~d~~~~-----~p~-~D~i~~  225 (309)
                      .....+|||+|||+|.++..+++.+ |..+ ++++|. +.+++    .+++.++++++.+|+.+.     .+. .|+|++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGK-IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeE-EEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence            4566799999999999999999886 5677 999998 54443    344457999999999872     233 499996


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ...    .......+++++++.|+|||++++.
T Consensus       150 ~~~----~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          150 DVA----QPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CCC----STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCC----CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            543    2233345599999999999999987

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.01  E-value=2.3e-10  Score=99.22  Aligned_cols=99  Identities=11%  Similarity=0.157  Sum_probs=80.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---C--CC-Cceee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---I--PA-ANAIF  224 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~--p~-~D~i~  224 (309)
                      .+..+|||||||+|..+..+++.+|+.+ ++++|. +.+++.++++       ++++++.+|+.+.   .  +. .|+|+
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEAT-IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence            3457999999999999999999999888 999998 6777766542       5799999999774   2  23 49999


Q ss_pred             ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +....+     +..++|+++.+.|+|||++++.+..+..
T Consensus       132 ~~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~g  165 (233)
T 2gpy_A          132 IDAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLFRG  165 (233)
T ss_dssp             EEGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC--
T ss_pred             ECCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCcCC
Confidence            877654     3468999999999999999998766543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.01  E-value=5.7e-10  Score=98.81  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=75.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------C---CCceEEeCCCCCC--------CC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------I---PGVTHIGGDMFNS--------IP  218 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~---~ri~~~~~d~~~~--------~p  218 (309)
                      .....+|||+|||+|.++..+++++|..+ ++++|. +.+++.+++       .   ++++++.+|+.+.        ++
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~-v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~  112 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAE-VTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP  112 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEE-EEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence            44567999999999999999999999988 999999 666665543       1   3699999999875        23


Q ss_pred             C--Cceeeehhhhh----------------cCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          219 A--ANAIFMKWVLA----------------TWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       219 ~--~D~i~~~~vlh----------------~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      .  .|+|+++-..+                +........+++.+++.|+|||+++++-
T Consensus       113 ~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          113 DEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             TTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            3  49999872222                1222235689999999999999998853

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.01  E-value=1.5e-10  Score=96.36  Aligned_cols=102  Identities=17%  Similarity=0.130  Sum_probs=81.0

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCC---
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIP---  218 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p---  218 (309)
                      .+++.++ .....+|||+|||+|.++..+++.+  .+ ++++|. +.+++.++++       ++++++.+|+.+.++   
T Consensus        24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   99 (192)
T 1l3i_A           24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIP   99 (192)
T ss_dssp             HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SE-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSC
T ss_pred             HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CE-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCC
Confidence            3445554 6667899999999999999999887  67 999998 6677666542       689999999866433   


Q ss_pred             CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          219 AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       219 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      ..|+|++..++|++     .++|+++++.|+|||++++....
T Consensus       100 ~~D~v~~~~~~~~~-----~~~l~~~~~~l~~gG~l~~~~~~  136 (192)
T 1l3i_A          100 DIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAIL  136 (192)
T ss_dssp             CEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECB
T ss_pred             CCCEEEECCchHHH-----HHHHHHHHHhcCCCcEEEEEecC
Confidence            35999998877543     68999999999999999998654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.01  E-value=3.8e-10  Score=97.42  Aligned_cols=99  Identities=13%  Similarity=0.095  Sum_probs=75.7

Q ss_pred             CCCcceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCC--CCCCCC--Cceeeeh
Q 021707          158 FKGVKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDM--FNSIPA--ANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~--~~~~p~--~D~i~~~  226 (309)
                      ..+..+|||+||| +|.++..+++.+ ..+ ++++|. +.+++.++++     .+++++.+|+  +..++.  .|+|+++
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~n  130 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCK-VTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSA  130 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCE-EEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEEC
Confidence            4567899999999 999999999987 677 999998 6777776642     3799999996  344443  4999988


Q ss_pred             hhhhcCChhH-----------------HHHHHHHHHHhcCCCcEEEEec
Q 021707          227 WVLATWTDDE-----------------CKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       227 ~vlh~~~d~~-----------------~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      -..+..++.+                 ..++|+++++.|+|||++++.-
T Consensus       131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  179 (230)
T 3evz_A          131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYL  179 (230)
T ss_dssp             CCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            6665544321                 3689999999999999999864

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.01  E-value=3.2e-10  Score=93.75  Aligned_cols=100  Identities=17%  Similarity=0.135  Sum_probs=79.2

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--  219 (309)
                      ..+++.++ ..+..+|||+|||+|.++..+++  +..+ ++++|. +.+++.++++      ++++++.+|+.++++.  
T Consensus        25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~  100 (183)
T 2yxd_A           25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKF-VYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLE  100 (183)
T ss_dssp             HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSE-EEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCC
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCe-EEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCC
Confidence            34555554 55678999999999999999998  7778 999998 6777776543      6899999999776553  


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      .|+|++..+      .+..++++++++.  |||++++....
T Consensus       101 ~D~i~~~~~------~~~~~~l~~~~~~--~gG~l~~~~~~  133 (183)
T 2yxd_A          101 FNKAFIGGT------KNIEKIIEILDKK--KINHIVANTIV  133 (183)
T ss_dssp             CSEEEECSC------SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred             CcEEEECCc------ccHHHHHHHHhhC--CCCEEEEEecc
Confidence            599999887      2345789999888  99999998743

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.00  E-value=5.7e-10  Score=102.75  Aligned_cols=102  Identities=19%  Similarity=0.217  Sum_probs=76.9

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCC-CC-C-C
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNS-IP-A-A  220 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~-~p-~-~  220 (309)
                      +.+... ..+..+|||||||+|.++..+++. +..+ ++++|..++++.++++       ++++++.+|+.+. +| + .
T Consensus        56 i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~  132 (340)
T 2fyt_A           56 IYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKK-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV  132 (340)
T ss_dssp             HHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred             HHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCE-EEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence            444443 456679999999999999999987 4457 9999996677776542       7899999999874 55 3 4


Q ss_pred             ceeeehhhhhcC-ChhHHHHHHHHHHHhcCCCcEEE
Q 021707          221 NAIFMKWVLATW-TDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       221 D~i~~~~vlh~~-~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      |+|++..+.+.+ .......+|+++++.|+|||+++
T Consensus       133 D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          133 DVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            999976632222 23345689999999999999987

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.99  E-value=1e-10  Score=102.13  Aligned_cols=94  Identities=15%  Similarity=0.087  Sum_probs=75.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-C----CC-Cceeee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-I----PA-ANAIFM  225 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~----p~-~D~i~~  225 (309)
                      ....+|||||||+|..+..++...|+.+ ++++|. +.+++.++++      ++++++.+|+.+. .    +. .|+|++
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLH-VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            4567999999999999999999889999 999998 6677776542      5799999988542 2    23 499998


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ..+    .+  ...+++.+++.|+|||++++.+.
T Consensus       148 ~~~----~~--~~~~l~~~~~~LkpgG~l~~~~g  175 (240)
T 1xdz_A          148 RAV----AR--LSVLSELCLPLVKKNGLFVALKA  175 (240)
T ss_dssp             ECC----SC--HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             ecc----CC--HHHHHHHHHHhcCCCCEEEEEeC
Confidence            663    32  46899999999999999998743

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.99  E-value=1.6e-10  Score=99.53  Aligned_cols=98  Identities=14%  Similarity=0.083  Sum_probs=78.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC---------CCCc
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI---------PAAN  221 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~---------p~~D  221 (309)
                      +..+|||||||+|..+..+++.+| +.+ ++++|. +.+++.++++       ++++++.+|+.+..         ...|
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGT-LITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            457999999999999999999998 778 999998 6677766542       57999999986531         2249


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +|++..     +......+++++++.|+|||++++.+..++.
T Consensus       143 ~v~~~~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g  179 (225)
T 3tr6_A          143 LIYIDA-----DKANTDLYYEESLKLLREGGLIAVDNVLRRG  179 (225)
T ss_dssp             EEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECSSGGG
T ss_pred             EEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEeCCCcCC
Confidence            998544     3345578999999999999999998887653

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.99  E-value=5.1e-10  Score=96.70  Aligned_cols=100  Identities=15%  Similarity=0.151  Sum_probs=80.2

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----CCceEEeCCCCCCCC--C-
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----PGVTHIGGDMFNSIP--A-  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----~ri~~~~~d~~~~~p--~-  219 (309)
                      ...+++.+. .....+|||||||+|.++..+++..  .+ ++++|. +.+++.++++    .+++++.+|+.+..+  . 
T Consensus        59 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~  134 (231)
T 1vbf_A           59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DK-VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKP  134 (231)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCC
T ss_pred             HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CE-EEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCC
Confidence            345566664 6667899999999999999999986  56 999998 6777766542    389999999987543  2 


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      .|+|++..++|++++        ++++.|+|||++++...
T Consensus       135 fD~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          135 YDRVVVWATAPTLLC--------KPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEc
Confidence            499999999998874        47889999999999854

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.99  E-value=4.9e-10  Score=97.08  Aligned_cols=96  Identities=13%  Similarity=0.034  Sum_probs=78.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC---Cceeeehh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA---ANAIFMKW  227 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~---~D~i~~~~  227 (309)
                      ++..+|+|||||+|.+++.+++.+|..+ ++++|. +..++.|+++       ++|+++.+|.++.++.   .|+|++..
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKS-AIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG   92 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence            3557999999999999999999999888 999998 6777776642       5899999999987652   59888765


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      .    ..+...++|..+.+.|+|+|++++.-.
T Consensus        93 ~----Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           93 M----GGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             E----CHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             C----ChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            4    334467899999999999998877533

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.98  E-value=5.6e-10  Score=100.30  Aligned_cols=94  Identities=14%  Similarity=0.119  Sum_probs=74.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCC-CC---ceeeeh-
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIP-AA---NAIFMK-  226 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p-~~---D~i~~~-  226 (309)
                      ...+|||+|||+|.++..+++. |+.+ ++++|. +.+++.++++       ++++++.+|+++..+ ..   |+|+++ 
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~-v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnP  200 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAI-VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP  200 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCE-EEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcC
Confidence            4468999999999999999999 9999 999999 7777777642       469999999988643 36   999986 


Q ss_pred             -----------hhhhcCCh------hHHHHHHHHHH-HhcCCCcEEEE
Q 021707          227 -----------WVLATWTD------DECKLIMENCY-KALLAGGKLIA  256 (309)
Q Consensus       227 -----------~vlh~~~d------~~~~~iL~~~~-~aL~pgG~l~i  256 (309)
                                 .+. +.|.      .+-..+++++. +.|+|||++++
T Consensus       201 Pyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~  247 (284)
T 1nv8_A          201 PYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  247 (284)
T ss_dssp             CCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             CCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence                       222 1221      11237899999 99999998886

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.98  E-value=3.2e-09  Score=92.42  Aligned_cols=108  Identities=13%  Similarity=0.130  Sum_probs=80.0

Q ss_pred             HHHhhcC--CCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhC----CCCCCceEEeCCCCCC--CC-
Q 021707          150 SVLDSYN--GFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEA----PSIPGVTHIGGDMFNS--IP-  218 (309)
Q Consensus       150 ~~~~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a----~~~~ri~~~~~d~~~~--~p-  218 (309)
                      .++..++  ..+.+.+|||+|||+|.++..+++. .|+-+ ++++|+ |.+++.+    ++..++..+.+|...+  .+ 
T Consensus        65 ~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~-V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~  143 (233)
T 4df3_A           65 ALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGR-IYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRH  143 (233)
T ss_dssp             HHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTT
T ss_pred             HHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCcccccc
Confidence            3555443  2677899999999999999999987 48888 999998 6666544    4458899999998764  22 


Q ss_pred             --C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          219 --A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       219 --~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                        . .|+|++...  +.  ++...+++++++.|||||+++|......
T Consensus       144 ~~~~vDvVf~d~~--~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~  186 (233)
T 4df3_A          144 LVEGVDGLYADVA--QP--EQAAIVVRNARFFLRDGGYMLMAIKARS  186 (233)
T ss_dssp             TCCCEEEEEECCC--CT--THHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred             ccceEEEEEEecc--CC--hhHHHHHHHHHHhccCCCEEEEEEeccc
Confidence              2 387775322  22  2346889999999999999999754433

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.97  E-value=4.2e-10  Score=103.99  Aligned_cols=94  Identities=19%  Similarity=0.201  Sum_probs=74.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCC-CCC--Cceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNS-IPA--ANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~-~p~--~D~i~~~~vl  229 (309)
                      +..+|||||||+|.++..+++. +..+ ++++|.+++++.+++.       ++|+++.+|+.+. +|.  .|+|++..+.
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~-v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARK-VIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCE-EEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            4579999999999999999988 5567 9999997777766542       5699999999875 553  4999986654


Q ss_pred             hcC-ChhHHHHHHHHHHHhcCCCcEEE
Q 021707          230 ATW-TDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       230 h~~-~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      |.+ .......+|+++++.|+|||+++
T Consensus       144 ~~l~~~~~~~~~l~~~~r~LkpgG~li  170 (349)
T 3q7e_A          144 YCLFYESMLNTVLHARDKWLAPDGLIF  170 (349)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccCchhHHHHHHHHHHhCCCCCEEc
Confidence            433 23344689999999999999986

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.97  E-value=6e-10  Score=99.34  Aligned_cols=104  Identities=19%  Similarity=0.258  Sum_probs=83.7

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~  219 (309)
                      ..++..++ .....+|||+|||+|.++..+++. .|..+ ++++|. +.+++.++++       ++++++.+|+.+.++.
T Consensus       102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  179 (277)
T 1o54_A          102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGK-VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE  179 (277)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCE-EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred             HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence            34566665 667789999999999999999999 68888 999998 7777766542       5799999999876554


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                        .|+|++     +.++.  .++|+++++.|+|||++++.++..
T Consensus       180 ~~~D~V~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~  216 (277)
T 1o54_A          180 KDVDALFL-----DVPDP--WNYIDKCWEALKGGGRFATVCPTT  216 (277)
T ss_dssp             CSEEEEEE-----CCSCG--GGTHHHHHHHEEEEEEEEEEESSH
T ss_pred             CccCEEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeCCH
Confidence              499987     33444  478999999999999999987543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.97  E-value=3.4e-10  Score=102.89  Aligned_cols=97  Identities=20%  Similarity=0.192  Sum_probs=77.1

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC---CC-C-Cceeeehhhh
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS---IP-A-ANAIFMKWVL  229 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~---~p-~-~D~i~~~~vl  229 (309)
                      .+|||||||+|.++..+++++|+.+ ++++|+ +.+++.+++      .+|++++.+|..+.   .+ + .|+|++....
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~-v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSR-NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCE-EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcE-EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            4999999999999999999999998 999999 778887764      26899999998653   33 3 4999986444


Q ss_pred             hcCChhH--HHHHHHHHHHhcCCCcEEEEecc
Q 021707          230 ATWTDDE--CKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       230 h~~~d~~--~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      +......  ..+++++++++|+|||.+++.-.
T Consensus       170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            4322221  25899999999999999988764

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.96  E-value=1.9e-10  Score=95.27  Aligned_cols=109  Identities=7%  Similarity=0.047  Sum_probs=78.9

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---I  217 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~  217 (309)
                      ..+++.+.......+|||+|||+|.++..+++. +..+ ++++|. +.+++.++++       ++++++.+|+.+.   .
T Consensus        20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   97 (177)
T 2esr_A           20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSA-AVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL   97 (177)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCE-EEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB
T ss_pred             HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh
Confidence            344444432345679999999999999999987 5567 999999 6777776542       4799999998763   2


Q ss_pred             CC-CceeeehhhhhcCChhHHHHHHHHHH--HhcCCCcEEEEeccccC
Q 021707          218 PA-ANAIFMKWVLATWTDDECKLIMENCY--KALLAGGKLIACEPVLL  262 (309)
Q Consensus       218 p~-~D~i~~~~vlh~~~d~~~~~iL~~~~--~aL~pgG~l~i~e~~~~  262 (309)
                      +. .|+|++...+|.   ....++++.+.  +.|+|||.+++......
T Consensus        98 ~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           98 TGRFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             CSCEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             cCCCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            23 499998765542   23346666666  89999999988765443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.96  E-value=7e-10  Score=101.07  Aligned_cols=102  Identities=17%  Similarity=0.260  Sum_probs=81.9

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC-
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP-  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p-  218 (309)
                      ...+++.++ .....+|||||||+|.++..+++..+ +.+ ++++|+ +.+++.++++      ++++++.+|+.+..+ 
T Consensus        64 ~~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~  141 (317)
T 1dl5_A           64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE  141 (317)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             HHHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc
Confidence            344566664 66678999999999999999999988 478 999998 6777766542      569999999977533 


Q ss_pred             -C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          219 -A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       219 -~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                       . .|+|++..++|+++        +++++.|+|||++++...
T Consensus       142 ~~~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          142 FSPYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             GCCEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred             CCCeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence             2 49999999999887        457889999999999853

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.96  E-value=2.6e-10  Score=98.62  Aligned_cols=86  Identities=10%  Similarity=0.061  Sum_probs=70.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-CCCceEEeCCCCCC--CC-C--Cceeeehhhhhc
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-IPGVTHIGGDMFNS--IP-A--ANAIFMKWVLAT  231 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-~~ri~~~~~d~~~~--~p-~--~D~i~~~~vlh~  231 (309)
                      ....+|||||||+|.++..+++.  ..+ ++++|. +.+++.+++ .++++++.+|+.+.  ++ .  .|+|+++     
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-----  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AAR-WAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR-----  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE-----
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC-----
Confidence            35679999999999999999988  557 999999 778887765 47899999999764  33 3  3999987     


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEE
Q 021707          232 WTDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                       .  +..++|+++++.|+|||+++
T Consensus       119 -~--~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          119 -R--GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             -S--CCSGGGGGHHHHEEEEEEEE
T ss_pred             -C--CHHHHHHHHHHHcCCCcEEE
Confidence             1  22478999999999999998

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.95  E-value=7.9e-10  Score=97.65  Aligned_cols=98  Identities=12%  Similarity=0.065  Sum_probs=75.5

Q ss_pred             CC-CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---CC-C-Ccee
Q 021707          158 FK-GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---IP-A-ANAI  223 (309)
Q Consensus       158 ~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~p-~-~D~i  223 (309)
                      .. +..+|||+|||+|.++..++++.+. + ++++|+ +.+++.++++       ++++++.+|+.+.   ++ . .|+|
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~-v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I  123 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-K-IVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV  123 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-E-EEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-c-EEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence            55 6789999999999999999999776 7 999999 6777776542       5799999999764   22 3 4999


Q ss_pred             eehhhhhcC------------------ChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          224 FMKWVLATW------------------TDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       224 ~~~~vlh~~------------------~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      +++-..+..                  ......++++.+++.|+|||+++++
T Consensus       124 i~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  175 (259)
T 3lpm_A          124 TCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV  175 (259)
T ss_dssp             EECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence            986333221                  1134568999999999999999995

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.95  E-value=2e-10  Score=100.81  Aligned_cols=98  Identities=12%  Similarity=0.024  Sum_probs=78.3

Q ss_pred             CcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC---C-----CC-Cc
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS---I-----PA-AN  221 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~---~-----p~-~D  221 (309)
                      +..+|||||||+|..+..+++..| +.+ ++++|. +.+++.+++       .++|+++.+|..+.   .     ++ .|
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQ-VITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCE-EEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            457999999999999999999986 778 999998 566665554       26899999998764   2     23 49


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +|++...     .......|+++++.|+|||.|++.+..+..
T Consensus       139 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g  175 (242)
T 3r3h_A          139 FIFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWDG  175 (242)
T ss_dssp             EEEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred             EEEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence            9987543     344567899999999999999998877654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.94  E-value=2.5e-10  Score=100.67  Aligned_cols=95  Identities=17%  Similarity=0.052  Sum_probs=76.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC-----CC-Cceeee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI-----PA-ANAIFM  225 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~-----p~-~D~i~~  225 (309)
                      ....+|||||||+|..+..++..+|+.+ ++++|. +.+++.++++      .+|+++.+|+.+..     .. .|+|++
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELE-LVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence            4567999999999999999999999999 999998 6677766542      56999999986532     13 499998


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +.+    .+  ...+++.+++.|+|||++++....
T Consensus       158 ~a~----~~--~~~ll~~~~~~LkpgG~l~~~~g~  186 (249)
T 3g89_A          158 RAV----AP--LCVLSELLLPFLEVGGAAVAMKGP  186 (249)
T ss_dssp             ESS----CC--HHHHHHHHGGGEEEEEEEEEEECS
T ss_pred             CCc----CC--HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            654    22  358999999999999999987654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.93  E-value=9.9e-10  Score=102.70  Aligned_cols=96  Identities=11%  Similarity=0.039  Sum_probs=79.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCC-C-C-Cceeeehhhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSI-P-A-ANAIFMKWVLA  230 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~-p-~-~D~i~~~~vlh  230 (309)
                      ...+|||+|||+|.++..+++.  +.+ ++++|. +.+++.++++     .+++++.+|+.+.. + . .|+|+++..+|
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~-V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~  309 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAE-VVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH  309 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCE-EEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence            4579999999999999999988  457 999998 6777777653     35899999998863 3 2 49999998888


Q ss_pred             c---CChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          231 T---WTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       231 ~---~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      .   ...+...++++++++.|+|||+++|+.
T Consensus       310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            7   345667899999999999999999874

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.93  E-value=2.5e-10  Score=97.46  Aligned_cols=97  Identities=16%  Similarity=0.084  Sum_probs=77.1

Q ss_pred             CcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCC---CCceeeehh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIP---AANAIFMKW  227 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p---~~D~i~~~~  227 (309)
                      +..+|||||||+|..+..+++.+| +.+ ++++|. +.+++.++++       ++++++.+|..+..|   ..|+|++..
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSR-VVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC
Confidence            457999999999999999999988 778 999998 6777776642       579999999865322   268888763


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      .     ..+...+++++++.|+|||.+++.+..+.
T Consensus       135 ~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  164 (210)
T 3c3p_A          135 D-----VFNGADVLERMNRCLAKNALLIAVNALRR  164 (210)
T ss_dssp             T-----TSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred             C-----hhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence            2     23456899999999999999998776654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.93  E-value=5.8e-10  Score=104.09  Aligned_cols=101  Identities=15%  Similarity=0.124  Sum_probs=78.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCC-CCC-Cceeeehhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNS-IPA-ANAIFMKWV  228 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~-~p~-~D~i~~~~v  228 (309)
                      ..+..+|||||||+|.++..++++. ..+ ++++|.+.+++.+++.       ++|+++.+|+.+. .|+ .|+|++..+
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g-~~~-V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~  138 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAG-ARK-VYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWM  138 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTT-CSE-EEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCC
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcC-CCE-EEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcCh
Confidence            4567899999999999999999883 336 9999998776666542       6799999999764 554 499999766


Q ss_pred             hhcCCh-hHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          229 LATWTD-DECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       229 lh~~~d-~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      .|.... .....+++++++.|+|||.+++.+..
T Consensus       139 ~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          139 GYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             BTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             hhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            665542 34567999999999999999876543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.93  E-value=5.1e-10  Score=93.10  Aligned_cols=101  Identities=7%  Similarity=-0.063  Sum_probs=74.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC------CC-Cce
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI------PA-ANA  222 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~------p~-~D~  222 (309)
                      .....+|||+|||+|.++..+++ .+..+ ++++|. +.+++.++++       ++++++.+|+.+..      +. .|+
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~  119 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVS-RGMDK-SICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL  119 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHH-TTCSE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hcCCCCEEEeCCccCHHHHHHHH-cCCCE-EEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCE
Confidence            34567999999999999999887 45567 999999 7777777642       57999999987632      23 499


Q ss_pred             eeehhhhhcCChhHHHHHHHHH--HHhcCCCcEEEEeccccCC
Q 021707          223 IFMKWVLATWTDDECKLIMENC--YKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~--~~aL~pgG~l~i~e~~~~~  263 (309)
                      |++...+|.....   +.++.+  ++.|+|||.+++.......
T Consensus       120 i~~~~~~~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~~~~~  159 (187)
T 2fhp_A          120 VLLDPPYAKQEIV---SQLEKMLERQLLTNEAVIVCETDKTVK  159 (187)
T ss_dssp             EEECCCGGGCCHH---HHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             EEECCCCCchhHH---HHHHHHHHhcccCCCCEEEEEeCCccc
Confidence            9998775533333   455555  7889999999887554433

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.93  E-value=6.4e-10  Score=103.65  Aligned_cols=103  Identities=10%  Similarity=0.074  Sum_probs=77.7

Q ss_pred             HHHHhhcCCCCCcceEEEecCC------ccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGS------AGDCLRMILQK-HHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IP-  218 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G------~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p-  218 (309)
                      +.+++.+.  .+..+|||||||      +|..+..++++ +|+.+ ++++|+ +.+.   ...++|+++.+|+.+. ++ 
T Consensus       207 e~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~-V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~  280 (419)
T 3sso_A          207 DRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQ-IYGLDIMDKSH---VDELRIRTIQGDQNDAEFLD  280 (419)
T ss_dssp             HHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCE-EEEEESSCCGG---GCBTTEEEEECCTTCHHHHH
T ss_pred             HHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHh---hcCCCcEEEEecccccchhh
Confidence            34444442  345799999999      66777777765 59999 999999 4442   2457999999999774 33 


Q ss_pred             ------C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          219 ------A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       219 ------~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                            + .|+|++. ..|++.  +..+.|+++++.|||||++++.|..
T Consensus       281 ~l~~~d~sFDlVisd-gsH~~~--d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          281 RIARRYGPFDIVIDD-GSHINA--HVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             HHHHHHCCEEEEEEC-SCCCHH--HHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             hhhcccCCccEEEEC-Ccccch--hHHHHHHHHHHhcCCCeEEEEEecc
Confidence                  3 4999875 456654  3468999999999999999999877

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.93  E-value=9.3e-10  Score=97.34  Aligned_cols=94  Identities=17%  Similarity=0.188  Sum_probs=76.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCC-CCC--CceeeehhhhhcCC
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNS-IPA--ANAIFMKWVLATWT  233 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~  233 (309)
                      ....+|||||||+|.++..+++.+|+.+ ++++|. +.+++.+++. .+++++.+|+.+. ++.  .|+|++..+.    
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEIT-TFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSE-EEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh----
Confidence            3467999999999999999999988888 999998 6777777653 7899999998653 333  4999986552    


Q ss_pred             hhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          234 DDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       234 d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                           ..+++++++|+|||++++..+..+
T Consensus       159 -----~~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          159 -----CKAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             -----CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred             -----hhHHHHHHhcCCCcEEEEEEcCHH
Confidence                 358999999999999999876543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.92  E-value=6.4e-10  Score=96.93  Aligned_cols=99  Identities=17%  Similarity=0.127  Sum_probs=78.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC------------
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI------------  217 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~------------  217 (309)
                      .+..+|||||||+|..+..+++.+| ..+ ++++|. +.+++.++++       ++++++.+|..+..            
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~  137 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGK-ILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW  137 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence            3467999999999999999999988 677 999998 6777666542       46999999976521            


Q ss_pred             ------C-C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          218 ------P-A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       218 ------p-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                            + . .|+|++...     .....++++++++.|+|||++++.+..++.
T Consensus       138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g  186 (239)
T 2hnk_A          138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKPGGLLIADNVLWDG  186 (239)
T ss_dssp             GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGGG
T ss_pred             cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCCCeEEEEEccccCC
Confidence                  1 3 499987643     344568899999999999999998866553

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.92  E-value=1.9e-09  Score=91.03  Aligned_cols=103  Identities=20%  Similarity=0.284  Sum_probs=74.8

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCC------------
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSI------------  217 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~------------  217 (309)
                      .+.+.+..+.+..+|||+|||+|.++..++++  ..+ ++++|+.++    ...++++++.+|+.+..            
T Consensus        15 ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~-V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   87 (191)
T 3dou_A           15 FLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARK-IISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREE   87 (191)
T ss_dssp             HHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSE-EEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCc-EEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcc
Confidence            45555543456789999999999999999988  667 999999543    23478999999998742            


Q ss_pred             --CCCceeeehhhhh---------cCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          218 --PAANAIFMKWVLA---------TWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       218 --p~~D~i~~~~vlh---------~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                        ...|+|++.....         ...-..+..+|+.+.+.|+|||++++.-.
T Consensus        88 ~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A           88 GIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             TCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence              2359998743211         01112346789999999999999987654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.92  E-value=1.5e-09  Score=91.14  Aligned_cols=105  Identities=19%  Similarity=0.280  Sum_probs=76.2

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC---------CceEEEeechhHHhhCCCCCCceEE-eCCCCCC----
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF---------ICEGINFDLPEVVGEAPSIPGVTHI-GGDMFNS----  216 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~---------~~~~~~~D~p~~~~~a~~~~ri~~~-~~d~~~~----  216 (309)
                      +.+.+..+....+|||||||+|.++..++++++.         .+ ++++|+.++    ...++++++ .+|+.+.    
T Consensus        13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~-v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGF-VLGVDLLHI----FPLEGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCE-EEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred             HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCce-EEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence            3334432455689999999999999999999875         77 999999653    123679999 9998753    


Q ss_pred             -----CCC--Cceeeehhhhhc----CChhH-----HHHHHHHHHHhcCCCcEEEEeccc
Q 021707          217 -----IPA--ANAIFMKWVLAT----WTDDE-----CKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       217 -----~p~--~D~i~~~~vlh~----~~d~~-----~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                           .+.  .|+|++...+|.    ..+..     ..++|+++++.|+|||++++....
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA  147 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence                 222  499998554432    12221     248899999999999999987653

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.92  E-value=4.1e-10  Score=102.13  Aligned_cols=100  Identities=17%  Similarity=0.204  Sum_probs=74.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCCC---C-C-Cce
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNSI---P-A-ANA  222 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~~---p-~-~D~  222 (309)
                      .+..+|||||||+|.++..+++..|..+ ++++|+ +.+++.+++          .+|++++.+|..+..   + + .|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEH-CDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence            4567999999999999999998877788 999999 667766543          268999999987531   2 3 499


Q ss_pred             eeehhhhhcCChhHH--HHHHHHHHHhcCCCcEEEEecc
Q 021707          223 IFMKWVLATWTDDEC--KLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       223 i~~~~vlh~~~d~~~--~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      |++....+.++....  .+++++++++|+|||++++...
T Consensus       173 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  211 (304)
T 3bwc_A          173 VIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGE  211 (304)
T ss_dssp             EEEECC---------CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence            999766665554322  5899999999999999998743

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.91  E-value=8.7e-10  Score=95.37  Aligned_cols=96  Identities=16%  Similarity=0.136  Sum_probs=76.2

Q ss_pred             cceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------C-CCceEEeCCCCCC---C-CC-Cceeee
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------I-PGVTHIGGDMFNS---I-PA-ANAIFM  225 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~-~ri~~~~~d~~~~---~-p~-~D~i~~  225 (309)
                      ..+|||||||+|..+..+++.+| +.+ ++++|. +.+++.+++       . ++|+++.+|..+.   + ++ .|+|++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~  135 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTT-LTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFG  135 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSE-EEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEE
Confidence            34999999999999999999885 778 999998 667776654       2 4899999998653   3 23 499987


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ...     .....+.++++.+.|+|||.+++.+..+.
T Consensus       136 d~~-----~~~~~~~l~~~~~~LkpGG~lv~dn~~~~  167 (221)
T 3dr5_A          136 QVS-----PMDLKALVDAAWPLLRRGGALVLADALLD  167 (221)
T ss_dssp             CCC-----TTTHHHHHHHHHHHEEEEEEEEETTTTGG
T ss_pred             cCc-----HHHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            542     23446789999999999999999887764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.90  E-value=7.3e-10  Score=97.43  Aligned_cols=99  Identities=12%  Similarity=0.038  Sum_probs=78.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---C------CC-
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---I------PA-  219 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~------p~-  219 (309)
                      .+..+|||||||+|..+..+++..| +.+ ++++|. +.+++.++++       ++|+++.+|..+.   .      +. 
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGK-ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCE-EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            3457999999999999999999988 778 999998 6677766542       5899999998653   2      23 


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      .|+|++...     ......+++++++.|+|||.|++.+.+++.
T Consensus       157 fD~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g  195 (247)
T 1sui_A          157 YDFIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLWNG  195 (247)
T ss_dssp             BSEEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTGGG
T ss_pred             EEEEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCcCC
Confidence            499987532     234578999999999999999887766543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.90  E-value=7.4e-09  Score=90.12  Aligned_cols=101  Identities=19%  Similarity=0.203  Sum_probs=79.4

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC-CC-
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI-PA-  219 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~-p~-  219 (309)
                      .++..++ .....+|||+|||+|.++..+++.  ..+ ++++|. +.+++.++++       ++++++.+|+.+.. +. 
T Consensus        82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  157 (248)
T 2yvl_A           82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGE-VWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG  157 (248)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred             HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence            4555554 666789999999999999999998  667 999998 6677666542       68999999998865 44 


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                       .|+|++.     .++.  .++|+++.+.|+|||++++..+..
T Consensus       158 ~~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~~  193 (248)
T 2yvl_A          158 IFHAAFVD-----VREP--WHYLEKVHKSLMEGAPVGFLLPTA  193 (248)
T ss_dssp             CBSEEEEC-----SSCG--GGGHHHHHHHBCTTCEEEEEESSH
T ss_pred             cccEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeCCH
Confidence             4999872     3333  478999999999999999987643

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.89  E-value=1.7e-09  Score=93.90  Aligned_cols=95  Identities=15%  Similarity=0.018  Sum_probs=78.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC---Cceeeehh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA---ANAIFMKW  227 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~---~D~i~~~~  227 (309)
                      +++.+|+|||||+|.+++.+++.+|..+ ++++|. |..++.|+++       ++|+++.+|.++..+.   .|+|++..
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaG   98 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDF-AIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICG   98 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeC
Confidence            4568999999999999999999998888 999998 6777777642       6899999999987442   59988765


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +    ..+...++|.+..+.|+++|++++.-
T Consensus        99 m----Gg~lI~~IL~~~~~~l~~~~~lIlqp  125 (230)
T 3lec_A           99 M----GGRLIADILNNDIDKLQHVKTLVLQP  125 (230)
T ss_dssp             E----CHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred             C----chHHHHHHHHHHHHHhCcCCEEEEEC
Confidence            5    33556789999999999999887775

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.89  E-value=4e-10  Score=95.87  Aligned_cols=97  Identities=8%  Similarity=-0.010  Sum_probs=73.6

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCCC-----CC-Cceeee
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNSI-----PA-ANAIFM  225 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~~-----p~-~D~i~~  225 (309)
                      ..+|||+|||+|.++..+++... .+ ++++|. +.+++.++++        ++++++.+|+.+..     .. .|+|++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQA-KK-VTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHccC-CE-EEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            46899999999999999887753 46 999998 6778777642        58999999986532     23 699998


Q ss_pred             hhhhhcCChhHHHHHHHHH--HHhcCCCcEEEEeccccC
Q 021707          226 KWVLATWTDDECKLIMENC--YKALLAGGKLIACEPVLL  262 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~--~~aL~pgG~l~i~e~~~~  262 (309)
                      ...+| .  .+..++++.+  .+.|+|||.+++......
T Consensus       132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            87755 3  3346788888  557999999988765443

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.89  E-value=5.6e-09  Score=90.91  Aligned_cols=105  Identities=11%  Similarity=0.182  Sum_probs=75.4

Q ss_pred             HHHHhhcC--CCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhH----HhhCCCCCCceEEeCCCCCC----
Q 021707          149 TSVLDSYN--GFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEV----VGEAPSIPGVTHIGGDMFNS----  216 (309)
Q Consensus       149 ~~~~~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~----~~~a~~~~ri~~~~~d~~~~----  216 (309)
                      ..++..++  .+..+.+|||+|||+|.++..+++.. |+.+ ++++|. +.+    ++.+++..+++++.+|..++    
T Consensus        63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~-V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~  141 (232)
T 3id6_C           63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGK-AYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYK  141 (232)
T ss_dssp             HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSE-EEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTT
T ss_pred             HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhh
Confidence            34555543  25667899999999999999999874 5777 999998 544    34444557899999998764    


Q ss_pred             -CCC-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          217 -IPA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       217 -~p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                       .++ .|+|++....   ++ +...+++++++.|+|||++++.-
T Consensus       142 ~~~~~~D~I~~d~a~---~~-~~~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          142 SVVENVDVLYVDIAQ---PD-QTDIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             TTCCCEEEEEECCCC---TT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccceEEEEecCCC---hh-HHHHHHHHHHHhCCCCeEEEEEE
Confidence             122 4999876432   33 32334556677999999999873

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.88  E-value=1.3e-09  Score=99.76  Aligned_cols=94  Identities=17%  Similarity=0.261  Sum_probs=73.1

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC-------CCceEEeCCCCCC-CC-C-Cceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI-------PGVTHIGGDMFNS-IP-A-ANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~-------~ri~~~~~d~~~~-~p-~-~D~i~~~~vl  229 (309)
                      +..+|||||||+|.++..+++. +..+ ++++|.+.+++.+++.       ++|+++.+|+.+. .| + .|+|++..+.
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g~~~-v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-GAKH-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCCEEEEecCccHHHHHHHHHC-CCCE-EEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            4579999999999999998886 4457 9999997677766542       6799999999875 55 3 4999987554


Q ss_pred             hcCC-hhHHHHHHHHHHHhcCCCcEEE
Q 021707          230 ATWT-DDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       230 h~~~-d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      +.+. +.....+|+++++.|+|||+++
T Consensus       116 ~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             hhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            4432 2334589999999999999987

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.88  E-value=7.1e-10  Score=95.64  Aligned_cols=98  Identities=11%  Similarity=0.123  Sum_probs=77.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---C------CCC
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---I------PAA  220 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~------p~~  220 (309)
                      .+..+|||||||+|..+..+++.+| +.+ ++++|. +.+++.++++       ++++++.+|+.+.   +      ...
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGR-VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            3567999999999999999999987 677 999998 6677666542       6899999998653   2      224


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      |+|++..     +......+++++.+.|+|||.+++.+..+.
T Consensus       147 D~v~~d~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  183 (229)
T 2avd_A          147 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLWR  183 (229)
T ss_dssp             EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred             cEEEECC-----CHHHHHHHHHHHHHHcCCCeEEEEECCCcC
Confidence            9998843     234456899999999999999999887654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.88  E-value=1e-09  Score=98.10  Aligned_cols=95  Identities=15%  Similarity=0.015  Sum_probs=76.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC--Cceeeehhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA--ANAIFMKWV  228 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~--~D~i~~~~v  228 (309)
                      ..+.+|||+|||+|.++..+++..+. + ++++|. |.+++.++++       ++++++.+|+++..+.  .|+|++...
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~-V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p  201 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-K-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  201 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-E-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-E-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence            34679999999999999999999877 7 999998 6777776542       4699999999886443  499988532


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                            ....++++++.+.|+|||++++.+...
T Consensus       202 ------~~~~~~l~~~~~~LkpgG~l~~~~~~~  228 (278)
T 2frn_A          202 ------VRTHEFIPKALSIAKDGAIIHYHNTVP  228 (278)
T ss_dssp             ------SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ------hhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence                  122578999999999999999988764

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.88  E-value=3.9e-09  Score=97.49  Aligned_cols=110  Identities=12%  Similarity=-0.005  Sum_probs=84.0

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IP  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p  218 (309)
                      +..++.... |....+|||+|||+|.++++++... |+.+ ++++|. +.+++.++++      ++++++.+|+.+. .+
T Consensus       192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~-v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~  269 (354)
T 3tma_A          192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSP-VYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF  269 (354)
T ss_dssp             HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSC-EEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCce-EEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence            344555554 7778899999999999999999998 8899 999998 7788777653      4899999999874 22


Q ss_pred             -C-CceeeehhhhhcCC--hh----HHHHHHHHHHHhcCCCcEEEEecc
Q 021707          219 -A-ANAIFMKWVLATWT--DD----ECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       219 -~-~D~i~~~~vlh~~~--d~----~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                       . .|+|+++-..+...  ..    ...++++++++.|+|||++++...
T Consensus       270 ~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          270 FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence             2 49999854433211  11    236899999999999999999744

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.87  E-value=2.8e-09  Score=93.32  Aligned_cols=95  Identities=15%  Similarity=0.116  Sum_probs=78.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC---Cceeeehh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA---ANAIFMKW  227 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~---~D~i~~~~  227 (309)
                      ++..+|+|||||+|.+++.+++.+|..+ ++++|. |..++.|+++       ++|+++.+|.++..+.   +|+|++..
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviag   98 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASF-AIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAG   98 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeC
Confidence            4567999999999999999999998888 999998 6777777652       6799999999987442   59988755


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +    ..+-..++|.+..+.|++++++++.-
T Consensus        99 m----Gg~lI~~IL~~~~~~L~~~~~lIlq~  125 (244)
T 3gnl_A           99 M----GGTLIRTILEEGAAKLAGVTKLILQP  125 (244)
T ss_dssp             E----CHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred             C----chHHHHHHHHHHHHHhCCCCEEEEEc
Confidence            4    34556789999999999999888874

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.87  E-value=1.6e-09  Score=93.64  Aligned_cols=100  Identities=20%  Similarity=0.204  Sum_probs=77.9

Q ss_pred             HHHhhcC-CCCCcceEEEecCCccHHHHHHHHhcC------CCceEEEeec-hhHHhhCCC-----------CCCceEEe
Q 021707          150 SVLDSYN-GFKGVKRLVDVGGSAGDCLRMILQKHH------FICEGINFDL-PEVVGEAPS-----------IPGVTHIG  210 (309)
Q Consensus       150 ~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p------~~~~~~~~D~-p~~~~~a~~-----------~~ri~~~~  210 (309)
                      .+++.+. ......+|||||||+|.++..+++..+      ..+ ++++|. +.+++.+++           .++++++.
T Consensus        73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  151 (227)
T 1r18_A           73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  151 (227)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCE-EEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCE-EEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence            3444442 144567999999999999999998765      357 999998 677776654           25899999


Q ss_pred             CCCCCCCCC---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          211 GDMFNSIPA---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       211 ~d~~~~~p~---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +|..+.++.   .|+|++...+|+++        +++.+.|+|||++++.-
T Consensus       152 ~d~~~~~~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          152 GDGRKGYPPNAPYNAIHVGAAAPDTP--------TELINQLASGGRLIVPV  194 (227)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEE
T ss_pred             CCcccCCCcCCCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEE
Confidence            999876553   49999999988765        56888999999998873

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.87  E-value=6.2e-09  Score=92.53  Aligned_cols=98  Identities=11%  Similarity=0.012  Sum_probs=72.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC--C------CceEE--eCCCCCCCCC-Cceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI--P------GVTHI--GGDMFNSIPA-ANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~--~------ri~~~--~~d~~~~~p~-~D~i~~~  226 (309)
                      +....+|||||||+|.++..+++.   .+ ++++|+..++..+++.  .      +++++  .+|+.+..+. .|+|++.
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd  147 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PH-VMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCD  147 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TT-EEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---Cc-EEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEe
Confidence            456789999999999999999887   56 9999996664433322  2      68999  8999764333 5999987


Q ss_pred             hhhhcCChh----H-HHHHHHHHHHhcCCCc--EEEEeccc
Q 021707          227 WVLATWTDD----E-CKLIMENCYKALLAGG--KLIACEPV  260 (309)
Q Consensus       227 ~vlh~~~d~----~-~~~iL~~~~~aL~pgG--~l~i~e~~  260 (309)
                      .. +..+..    . ..++|+.+++.|+|||  .+++..+.
T Consensus       148 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          148 VG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             Cc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            66 433221    1 2348999999999999  88885544

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.87  E-value=2.9e-09  Score=94.67  Aligned_cols=104  Identities=13%  Similarity=0.204  Sum_probs=81.2

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCC---------CCCceEEeCCCCCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPS---------IPGVTHIGGDMFNS-  216 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~---------~~ri~~~~~d~~~~-  216 (309)
                      ..++..++ .....+|||+|||+|.++..+++. .|..+ ++++|. +.+++.+++         .++++++.+|+.+. 
T Consensus        89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQ-VISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            34566665 667789999999999999999996 57888 999998 667666543         25899999999765 


Q ss_pred             CCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          217 IPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       217 ~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      ++.  .|+|++     +.++.  .++|++++++|+|||++++..+..
T Consensus       167 ~~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          167 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CCCCceeEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeCCH
Confidence            433  499988     23333  278999999999999999987643

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.87  E-value=5.8e-10  Score=91.32  Aligned_cols=95  Identities=16%  Similarity=0.070  Sum_probs=71.7

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----C-CceEEeCCCCCCCC-------CCceeeeh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----P-GVTHIGGDMFNSIP-------AANAIFMK  226 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----~-ri~~~~~d~~~~~p-------~~D~i~~~  226 (309)
                      ...+|||+|||+|.++..+++..+.   ++++|. +.+++.++++    . +++++.+|+.+..+       ..|+|++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~  117 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence            4579999999999999999998654   899998 7777777653    2 89999999876322       25999998


Q ss_pred             hhhhcCChhHHHHHHHHHH--HhcCCCcEEEEecccc
Q 021707          227 WVLATWTDDECKLIMENCY--KALLAGGKLIACEPVL  261 (309)
Q Consensus       227 ~vlh~~~d~~~~~iL~~~~--~aL~pgG~l~i~e~~~  261 (309)
                      ..+| -..+   ++++.+.  +.|+|||.+++.....
T Consensus       118 ~~~~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          118 PPYA-MDLA---ALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             CCTT-SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             CCCc-hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence            7776 2222   3445554  9999999988865543

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.86  E-value=5.4e-09  Score=93.46  Aligned_cols=98  Identities=8%  Similarity=-0.051  Sum_probs=71.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCC--C------CceEE--eCCCCCCCCC-Cceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI--P------GVTHI--GGDMFNSIPA-ANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~--~------ri~~~--~~d~~~~~p~-~D~i~~~  226 (309)
                      +....+|||||||+|.++..++++   .+ ++++|+..++..+++.  .      +++++  .+|+.+..+. .|+|++.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd  155 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PN-VREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCD  155 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TT-EEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEEC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CC-EEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEEC
Confidence            456789999999999999999987   46 9999996664444322  2      78999  8998763333 5999987


Q ss_pred             hhhhcCCh----hH-HHHHHHHHHHhcCCCc--EEEEeccc
Q 021707          227 WVLATWTD----DE-CKLIMENCYKALLAGG--KLIACEPV  260 (309)
Q Consensus       227 ~vlh~~~d----~~-~~~iL~~~~~aL~pgG--~l~i~e~~  260 (309)
                      .. +..+.    .. ..++|+.+++.|+|||  .+++..+.
T Consensus       156 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          156 IG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            66 43322    11 2358999999999999  88885443

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.85  E-value=8.9e-10  Score=97.25  Aligned_cols=96  Identities=14%  Similarity=0.179  Sum_probs=75.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC--Cceeeehhhhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA--ANAIFMKWVLA  230 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~--~D~i~~~~vlh  230 (309)
                      .+..+|||+|||+|.++..+++..+  + ++++|. |.+++.++++     -.+++..+|+.+.++.  .|+|+++...|
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~-v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--K-ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--e-EEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH
Confidence            3567999999999999999998766  7 999998 6677666542     1289999998765433  49999865443


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                           ....+++++++.|+|||++++.+....
T Consensus       196 -----~~~~~l~~~~~~LkpgG~lils~~~~~  222 (254)
T 2nxc_A          196 -----LHAALAPRYREALVPGGRALLTGILKD  222 (254)
T ss_dssp             -----HHHHHHHHHHHHEEEEEEEEEEEEEGG
T ss_pred             -----HHHHHHHHHHHHcCCCCEEEEEeeccC
Confidence                 346899999999999999999876544

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.84  E-value=4.4e-09  Score=90.56  Aligned_cols=93  Identities=20%  Similarity=0.160  Sum_probs=74.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhc-----CCCceEEEeec-hhHHhhCCC-----------CCCceEEeCCCCCCC---
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKH-----HFICEGINFDL-PEVVGEAPS-----------IPGVTHIGGDMFNSI---  217 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~~D~-p~~~~~a~~-----------~~ri~~~~~d~~~~~---  217 (309)
                      .....+|||||||+|.++..+++..     |+.+ ++++|. +.+++.+++           .++++++.+|..+..   
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  156 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSY-VIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE  156 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCE-EEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence            4456799999999999999999986     5678 999998 667766654           258999999997754   


Q ss_pred             -CC---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          218 -PA---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       218 -p~---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                       +.   .|+|++...+|++        ++++++.|+|||++++.-.
T Consensus       157 ~~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          157 KKELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred             CccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence             22   4999999888765        4678899999999998743

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.83  E-value=1.3e-09  Score=97.83  Aligned_cols=100  Identities=17%  Similarity=0.106  Sum_probs=76.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC-Cce
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA-ANA  222 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~-~D~  222 (309)
                      ..++.+|||||||+|..+.++++..|..+ ++++|+ +.+++.+++          .+|++++.+|..+.   .++ .|+
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~  154 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV  154 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceE
Confidence            34567999999999999999998878888 999999 677766543          26899999998653   233 499


Q ss_pred             eeehhhhhcCChhHH--HHHHHHHHHhcCCCcEEEEec
Q 021707          223 IFMKWVLATWTDDEC--KLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       223 i~~~~vlh~~~d~~~--~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      |++....+..+....  .+++++++++|+|||.+++.-
T Consensus       155 Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          155 IIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             EEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            998543332222222  589999999999999998874

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.83  E-value=1.5e-09  Score=94.67  Aligned_cols=98  Identities=14%  Similarity=0.058  Sum_probs=77.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---C------CC-
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---I------PA-  219 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~------p~-  219 (309)
                      .+..+|||||||+|..+..+++..| +.+ ++++|. +.+++.++++       ++|+++.+|..+.   +      +. 
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGK-ITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            3467999999999999999999988 678 999998 6777766542       5799999998653   2      23 


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      .|+|++..     +......+++++.+.|+|||.+++.+..+.
T Consensus       148 fD~I~~d~-----~~~~~~~~l~~~~~~L~pGG~lv~d~~~~~  185 (237)
T 3c3y_A          148 YDFGFVDA-----DKPNYIKYHERLMKLVKVGGIVAYDNTLWG  185 (237)
T ss_dssp             EEEEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECTTGG
T ss_pred             cCEEEECC-----chHHHHHHHHHHHHhcCCCeEEEEecCCcC
Confidence            49998753     334567899999999999999988776554

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.83  E-value=4.9e-09  Score=94.20  Aligned_cols=101  Identities=17%  Similarity=0.189  Sum_probs=73.5

Q ss_pred             HHHHhhcCCCC-CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhh-CCCCCCceEEe-CCCCC----CCCC-
Q 021707          149 TSVLDSYNGFK-GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGE-APSIPGVTHIG-GDMFN----SIPA-  219 (309)
Q Consensus       149 ~~~~~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~-a~~~~ri~~~~-~d~~~----~~p~-  219 (309)
                      ..+++.+. .. ...+|||||||+|.++..+++. +..+ ++++|. +.+++. ++..+|+.... .|+..    .+|. 
T Consensus        74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~-V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~  150 (291)
T 3hp7_A           74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKL-VYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEG  150 (291)
T ss_dssp             HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTC
T ss_pred             HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCC
Confidence            44566664 43 4569999999999999999887 4456 999999 667766 34446665543 23321    1343 


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                       .|++++..++|++     ..+|+++++.|+|||++++.
T Consensus       151 ~fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          151 LPSFASIDVSFISL-----NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             CCSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEE
T ss_pred             CCCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEE
Confidence             5999888777754     47899999999999999987

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.83  E-value=1.9e-10  Score=101.14  Aligned_cols=100  Identities=8%  Similarity=-0.016  Sum_probs=69.5

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCC----CCC----C-Cce
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFN----SIP----A-ANA  222 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~----~~p----~-~D~  222 (309)
                      ...+|||+|||+|.++..+++++|+.+ ++++|. +.+++.++++       ++++++.+|..+    +++    . .|+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWY-FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            456999999999999999999998888 999998 7787776542       469999999543    444    2 499


Q ss_pred             eeehhhhhcCCh-------------hHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          223 IFMKWVLATWTD-------------DECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       223 i~~~~vlh~~~d-------------~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      |+++-..|....             +....++++++++|+|||.+.+++.+
T Consensus       144 i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~  194 (254)
T 2h00_A          144 CMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRI  194 (254)
T ss_dssp             EEECCCCC-------------------------CTTTTHHHHTHHHHHHHH
T ss_pred             EEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHH
Confidence            998855544330             01134677788888888887776544

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.82  E-value=1.1e-09  Score=95.21  Aligned_cols=97  Identities=16%  Similarity=0.151  Sum_probs=77.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---C------CCCc
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---I------PAAN  221 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~------p~~D  221 (309)
                      +..+|||||||+|..+..+++..| +.+ ++++|. +.+++.++++       ++|+++.+|..+.   +      ...|
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQ-IIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            456999999999999999999987 678 999998 6677766542       5799999997542   1      2249


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      +|++...     ..+...+++++.+.|+|||.|++.+..++
T Consensus       151 ~V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  186 (232)
T 3cbg_A          151 LIFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH  186 (232)
T ss_dssp             EEEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred             EEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence            9987543     34557899999999999999999887765

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.81  E-value=9.6e-09  Score=91.91  Aligned_cols=95  Identities=12%  Similarity=0.067  Sum_probs=72.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec--hhHHhhCCCC----------------CCceEEeCCCCCC---C
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL--PEVVGEAPSI----------------PGVTHIGGDMFNS---I  217 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~--p~~~~~a~~~----------------~ri~~~~~d~~~~---~  217 (309)
                      ....+|||||||+|.++..+++.. ..+ ++++|.  +.+++.++++                ++++++..|+.+.   +
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~-v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAG-ADQ-VVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTT-CSE-EEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcC-CCE-EEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            455799999999999999888763 346 999999  4666654321                3788887766543   2


Q ss_pred             -----CC-CceeeehhhhhcCChhHHHHHHHHHHHhcC---C--CcEEEEe
Q 021707          218 -----PA-ANAIFMKWVLATWTDDECKLIMENCYKALL---A--GGKLIAC  257 (309)
Q Consensus       218 -----p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~---p--gG~l~i~  257 (309)
                           +. .|+|++..++|+.++  ...+++.+++.|+   |  ||+++++
T Consensus       156 ~~~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          156 QRCTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHHHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             HhhccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence                 22 499999999987554  4689999999999   9  9987664

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.81  E-value=1.9e-09  Score=96.63  Aligned_cols=97  Identities=20%  Similarity=0.194  Sum_probs=72.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC----------------CCCCceEEeCCCCCCC--CC-
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP----------------SIPGVTHIGGDMFNSI--PA-  219 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~----------------~~~ri~~~~~d~~~~~--p~-  219 (309)
                      ...+|||||||+|.++..++++ |..+ ++++|+ |.+++.++                ..+|++++.+|..+..  ++ 
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~-v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDE-VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSE-EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            4579999999999999999998 8778 999999 66766543                2368999999975432  33 


Q ss_pred             CceeeehhhhhcCChhH--HHHHHHHHHHhcCCCcEEEEec
Q 021707          220 ANAIFMKWVLATWTDDE--CKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~--~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      .|+|++....+..+...  ..++++++++.|+|||.+++..
T Consensus       153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            49999855433222222  2688999999999999998863

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.81  E-value=1.7e-09  Score=96.65  Aligned_cols=98  Identities=20%  Similarity=0.166  Sum_probs=75.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC-Cceee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA-ANAIF  224 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~-~D~i~  224 (309)
                      +..+|||||||+|.++.+++++.|..+ ++++|+ |.+++.+++          .+|++++.+|.++.   .++ .|+|+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKK-ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSE-EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCce-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            457999999999999999998877778 999999 777776543          36899999998753   233 49999


Q ss_pred             ehhhhhcCChh--HHHHHHHHHHHhcCCCcEEEEec
Q 021707          225 MKWVLATWTDD--ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       225 ~~~vlh~~~d~--~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +.-..+..+..  ...+++++++++|+|||.+++..
T Consensus       154 ~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            85433322211  12579999999999999998873

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.81  E-value=5.5e-09  Score=95.74  Aligned_cols=103  Identities=15%  Similarity=0.174  Sum_probs=78.2

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCC-----------------CCCceEE
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPS-----------------IPGVTHI  209 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~-----------------~~ri~~~  209 (309)
                      ..++..++ .....+|||||||+|.++..+++. .|+.+ ++++|. +.+++.+++                 .++++++
T Consensus        95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~  172 (336)
T 2b25_A           95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGR-VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  172 (336)
T ss_dssp             HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence            34566665 667789999999999999999998 47788 999998 666666543                 2589999


Q ss_pred             eCCCCCC---CCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          210 GGDMFNS---IPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       210 ~~d~~~~---~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      .+|+.+.   ++.  .|+|++..     ++.  ..+++++++.|+|||++++....
T Consensus       173 ~~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          173 HKDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             ESCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred             ECChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCCCcEEEEEeCC
Confidence            9999874   333  49998743     222  13799999999999999987653

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.80  E-value=2.5e-09  Score=97.36  Aligned_cols=98  Identities=18%  Similarity=0.148  Sum_probs=76.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----------CCCceEEeCCCCCC---CCC-Ccee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----------IPGVTHIGGDMFNS---IPA-ANAI  223 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----------~~ri~~~~~d~~~~---~p~-~D~i  223 (309)
                      ...+|||||||+|..+..++++.|..+ ++++|+ +.+++.+++           .+|++++.+|..+.   .++ .|+|
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEK-AVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            457999999999999999999878888 999999 667766542           36899999998763   233 4999


Q ss_pred             eehhhhhc---CChhH--HHHHHHHHHHhcCCCcEEEEec
Q 021707          224 FMKWVLAT---WTDDE--CKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       224 ~~~~vlh~---~~d~~--~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      ++....|.   -+...  ..+++++++++|+|||.+++..
T Consensus       156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            98765543   11111  3689999999999999999874

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.79  E-value=8.8e-09  Score=93.37  Aligned_cols=96  Identities=13%  Similarity=0.043  Sum_probs=69.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-----hhHHhhCC--CC--CCceEEeC-CCCCCCCC-Cceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-----PEVVGEAP--SI--PGVTHIGG-DMFNSIPA-ANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-----p~~~~~a~--~~--~ri~~~~~-d~~~~~p~-~D~i~~~  226 (309)
                      +....+|||||||+|.++..++++   .+ ++++|.     +..++..+  ..  ++++++.+ |+.+..+. .|+|++.
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~-V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd  155 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KN-VREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCD  155 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TT-EEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CC-EEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEEC
Confidence            455689999999999999999987   36 999998     43333322  12  67999999 98764333 5999986


Q ss_pred             hhhh---cCChhH-HHHHHHHHHHhcCCCcEEEEe
Q 021707          227 WVLA---TWTDDE-CKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       227 ~vlh---~~~d~~-~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ..++   ...+.. ..++|+.+++.|+|||.+++.
T Consensus       156 ~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          156 IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            5543   222222 236899999999999977763

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.79  E-value=2.9e-09  Score=92.77  Aligned_cols=96  Identities=19%  Similarity=0.278  Sum_probs=63.8

Q ss_pred             HHHHhhcCCCC-CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CC--------ceEEe-CCCCCC
Q 021707          149 TSVLDSYNGFK-GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PG--------VTHIG-GDMFNS  216 (309)
Q Consensus       149 ~~~~~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~r--------i~~~~-~d~~~~  216 (309)
                      ..+++.+. .. ...+|||||||+|.++..+++.. ..+ ++++|+ +.+++.+++. ++        +.+.. .|+...
T Consensus        26 ~~~L~~~~-~~~~g~~VLDiGcGtG~~t~~la~~g-~~~-V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (232)
T 3opn_A           26 EKALKEFH-LEINGKTCLDIGSSTGGFTDVMLQNG-AKL-VYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQG  102 (232)
T ss_dssp             HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTT-CSE-EEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSC
T ss_pred             HHHHHHcC-CCCCCCEEEEEccCCCHHHHHHHhcC-CCE-EEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcC
Confidence            44556664 33 35699999999999999999883 237 999998 5666654332 33        33333 233221


Q ss_pred             CCC---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          217 IPA---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       217 ~p~---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .+.   .|+++++.          .++|++++++|+|||++++.
T Consensus       103 ~~d~~~~D~v~~~l----------~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          103 RPSFTSIDVSFISL----------DLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             CCSEEEECCSSSCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred             CCCEEEEEEEhhhH----------HHHHHHHHHhccCCCEEEEE
Confidence            222   25554432          47999999999999999986

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.79  E-value=2.6e-09  Score=97.58  Aligned_cols=98  Identities=16%  Similarity=0.107  Sum_probs=74.5

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC-Cceee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA-ANAIF  224 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~-~D~i~  224 (309)
                      ...+|||||||+|..+.+++++.|..+ ++++|+ +.+++.+++          .+|++++.+|..+.   .++ .|+|+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            457999999999999999998878888 999999 677766542          26899999998653   233 49999


Q ss_pred             ehhhhhcCChhHH--HHHHHHHHHhcCCCcEEEEec
Q 021707          225 MKWVLATWTDDEC--KLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       225 ~~~vlh~~~d~~~--~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +...-+.-+....  .++++++++.|+|||.+++..
T Consensus       195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            7542221111211  689999999999999998863

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.78  E-value=2.2e-09  Score=98.59  Aligned_cols=99  Identities=19%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CC-C-Cc
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IP-A-AN  221 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p-~-~D  221 (309)
                      .....+|||||||+|..+..++++.|..+ ++++|+ +.+++.+++          .+|++++.+|+++.   .+ . .|
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~-V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD  196 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQ-IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  196 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence            34567999999999999999999888888 999999 677776653          26899999998653   33 2 49


Q ss_pred             eeeehhhhhcCChhH--HHHHHHHHHHhcCCCcEEEEe
Q 021707          222 AIFMKWVLATWTDDE--CKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~--~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      +|++....+..+.+.  ..+++++++++|+|||.+++.
T Consensus       197 lIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          197 AVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            999854321111111  368999999999999999886

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.77  E-value=2.7e-09  Score=96.79  Aligned_cols=100  Identities=15%  Similarity=0.146  Sum_probs=74.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC-Cce
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA-ANA  222 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~-~D~  222 (309)
                      ..+..+|||||||+|.++.+++++.|..+ ++++|+ +.+++.+++          .+|++++.+|.++.   .++ .|+
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~  171 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVES-VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV  171 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceE
Confidence            34567999999999999999999888888 999999 677766653          36899999998653   223 499


Q ss_pred             eeehhhhhcCChh--HHHHHHHHHHHhcCCCcEEEEec
Q 021707          223 IFMKWVLATWTDD--ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       223 i~~~~vlh~~~d~--~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      |++....+..+..  ...++++++++.|+|||.+++..
T Consensus       172 Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          172 IITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            9985443322211  23578999999999999998865

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.77  E-value=2.6e-09  Score=97.25  Aligned_cols=98  Identities=20%  Similarity=0.202  Sum_probs=71.7

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCCC---CC-Cceee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNSI---PA-ANAIF  224 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~~---p~-~D~i~  224 (309)
                      +..+|||||||+|..+..++++.|..+ ++++|+ +.+++.+++          .+|++++.+|..+..   ++ .|+|+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEK-VTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCE-EEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            457999999999999999999888888 999999 677766542          268999999987632   23 49999


Q ss_pred             ehhhhhcCChhHH--HHHHHHHHHhcCCCcEEEEec
Q 021707          225 MKWVLATWTDDEC--KLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       225 ~~~vlh~~~d~~~--~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +...-|.-++...  .++++++++.|+|||.+++..
T Consensus       187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            7543222222221  689999999999999998875

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.76  E-value=1.3e-10  Score=101.29  Aligned_cols=93  Identities=15%  Similarity=0.054  Sum_probs=75.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCC--Cceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPA--ANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~--~D~i~~~~vl  229 (309)
                      ...+|||+|||+|.++..+++..  .+ ++++|. +.+++.++++       ++++++.+|+.+..+.  .|+|++...+
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~  154 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MR-VIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPW  154 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCC
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCc
Confidence            45799999999999999999874  67 999998 6777777642       4899999999765332  4999999999


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      |+..+..  ..+.++++.|+|||.+++.
T Consensus       155 ~~~~~~~--~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          155 GGPDYAT--AETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             SSGGGGG--SSSBCTTTSCSSCHHHHHH
T ss_pred             CCcchhh--hHHHHHHhhcCCcceeHHH
Confidence            8876653  3677889999999985544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.76  E-value=2.2e-09  Score=94.29  Aligned_cols=104  Identities=9%  Similarity=-0.030  Sum_probs=84.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC--Cceeeehhhhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA--ANAIFMKWVLA  230 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~--~D~i~~~~vlh  230 (309)
                      ..+.+|||||||.|-++..+...+|..+ ++++|. +.+++.++++     .+.++...|+....|.  +|++++.-++|
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~-y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~  209 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETV-YIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLP  209 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCE-EEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHH
Confidence            3477999999999999999999999999 999999 6777776653     5588889999887444  49999999999


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEecc--ccCCC
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEP--VLLDD  264 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~--~~~~~  264 (309)
                      ++.+++....+ ++.++|+|+|.++..+.  +-...
T Consensus       210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs  244 (281)
T 3lcv_B          210 CLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS  244 (281)
T ss_dssp             HHHHHSTTHHH-HHHHHSSCSEEEEEEECC------
T ss_pred             HhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC
Confidence            99888766677 89999999998888877  44443

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.76  E-value=4.2e-09  Score=94.60  Aligned_cols=102  Identities=17%  Similarity=0.269  Sum_probs=73.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IP  218 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p  218 (309)
                      ...+++.++ .....+|||||||+|.++..+++...  + ++++|. +.+++.+++.       ++++++.+|+.+. ++
T Consensus        17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~   92 (285)
T 1zq9_A           17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--K-VVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   92 (285)
T ss_dssp             HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--E-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence            455666665 66678999999999999999999853  6 999998 6677665431       5799999999874 66


Q ss_pred             CCceeeehhhhhcCChhHHHHHHH--------------HH--HHhcCCCcEE
Q 021707          219 AANAIFMKWVLATWTDDECKLIME--------------NC--YKALLAGGKL  254 (309)
Q Consensus       219 ~~D~i~~~~vlh~~~d~~~~~iL~--------------~~--~~aL~pgG~l  254 (309)
                      ..|+|+++ ..++|..+...++|.              ++  +.+++|||++
T Consensus        93 ~fD~vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~  143 (285)
T 1zq9_A           93 FFDTCVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKL  143 (285)
T ss_dssp             CCSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTT
T ss_pred             hhcEEEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcc
Confidence            56988874 334444444444442              22  4688999865

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.76  E-value=7.8e-09  Score=87.30  Aligned_cols=94  Identities=14%  Similarity=0.157  Sum_probs=69.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCCCCC-CceeeehhhhhcCCh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNSIPA-ANAIFMKWVLATWTD  234 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~~p~-~D~i~~~~vlh~~~d  234 (309)
                      .....+|||+|||+|.++..+++. +..+ ++++|. +.+++.++++ .+++++.+|+.+ +|. .|+|++...+|++.+
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~  125 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLL-GAES-VTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVK  125 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHT-TBSE-EEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-----
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccC
Confidence            335679999999999999999987 4456 999998 7788777654 389999999976 454 499999999998876


Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEe
Q 021707          235 DECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       235 ~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ....++++++.+.+  |+ ++++
T Consensus       126 ~~~~~~l~~~~~~~--g~-~~~~  145 (200)
T 1ne2_A          126 HSDRAFIDKAFETS--MW-IYSI  145 (200)
T ss_dssp             --CHHHHHHHHHHE--EE-EEEE
T ss_pred             chhHHHHHHHHHhc--Cc-EEEE
Confidence            55568899999998  44 4444

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.76  E-value=8.2e-09  Score=88.77  Aligned_cols=93  Identities=19%  Similarity=0.134  Sum_probs=73.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC-----------CCCceEEeCCCCCCCC-C--Cc
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS-----------IPGVTHIGGDMFNSIP-A--AN  221 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~-----------~~ri~~~~~d~~~~~p-~--~D  221 (309)
                      .....+|||||||+|.++..+++.+ |..+ ++++|. +.+++.+++           .++++++.+|..+..+ .  .|
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  153 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGK-VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD  153 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence            4456799999999999999999986 6678 999998 667766653           2489999999875432 2  49


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      +|++...++++.        +++++.|+|||++++...
T Consensus       154 ~i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~  183 (226)
T 1i1n_A          154 AIHVGAAAPVVP--------QALIDQLKPGGRLILPVG  183 (226)
T ss_dssp             EEEECSBBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred             EEEECCchHHHH--------HHHHHhcCCCcEEEEEEe
Confidence            999988887654        568899999999998743

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.76  E-value=9.9e-09  Score=93.43  Aligned_cols=110  Identities=15%  Similarity=0.106  Sum_probs=80.6

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC--CCC-
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS--IPA-  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~--~p~-  219 (309)
                      +...++ ...+.+|||+|||+|..+..+++.+++ .+ ++++|. +.+++.++++      .+++++.+|+.+.  .+. 
T Consensus       110 ~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~-v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~  187 (315)
T 1ixk_A          110 PPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGV-IYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE  187 (315)
T ss_dssp             HHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred             HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccccccc
Confidence            344454 566789999999999999999999754 67 999998 6677766542      5799999998764  233 


Q ss_pred             Cceeeeh------hhhhc-------CChhH-------HHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          220 ANAIFMK------WVLAT-------WTDDE-------CKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       220 ~D~i~~~------~vlh~-------~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      .|+|++.      .+++.       |+.++       ..++|+++++.|+|||++++......
T Consensus       188 fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~  250 (315)
T 1ixk_A          188 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  250 (315)
T ss_dssp             EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             CCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCC
Confidence            4999873      22332       33222       25899999999999999998765443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.75  E-value=3.2e-09  Score=94.67  Aligned_cols=100  Identities=14%  Similarity=0.060  Sum_probs=80.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC-Cceeeehhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA-ANAIFMKWV  228 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~-~D~i~~~~v  228 (309)
                      +.+..+|||+|||+|.++..+++.++..+ ++++|. |.+++.++++      ++++++.+|+.+. .+. .|+|++...
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~-V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p  195 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKL-VYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYV  195 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSE-EEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCc
Confidence            45667999999999999999999988888 999999 7777777642      5789999999875 222 499988654


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .      ...++++++.+.|+|||.+++.+....++
T Consensus       196 ~------~~~~~l~~~~~~LkpgG~l~~s~~~~~~~  225 (272)
T 3a27_A          196 H------KTHKFLDKTFEFLKDRGVIHYHETVAEKI  225 (272)
T ss_dssp             S------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG
T ss_pred             c------cHHHHHHHHHHHcCCCCEEEEEEcCcccc
Confidence            2      33578999999999999999988776554

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.75  E-value=4.4e-09  Score=89.41  Aligned_cols=96  Identities=8%  Similarity=-0.028  Sum_probs=72.3

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC--CC-C-Cceeeehhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS--IP-A-ANAIFMKWVL  229 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~--~p-~-~D~i~~~~vl  229 (309)
                      ..+|||+|||+|.++..++++.. .+ ++++|. +.+++.++++      ++++++.+|+.+.  .+ . .|+|++...+
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~-~~-V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA-AG-ATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            46899999999999999887753 36 999998 7788777642      5899999998663  22 2 4999987665


Q ss_pred             hcCChhHHHHHHHHHHHh--cCCCcEEEEecccc
Q 021707          230 ATWTDDECKLIMENCYKA--LLAGGKLIACEPVL  261 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~a--L~pgG~l~i~e~~~  261 (309)
                      | ..  ...++++.+.+.  |+|||++++.....
T Consensus       133 ~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          133 R-RG--LLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             S-TT--THHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             C-CC--cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            5 22  335678888764  99999998775543

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.73  E-value=1.4e-08  Score=90.05  Aligned_cols=89  Identities=16%  Similarity=0.094  Sum_probs=73.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----------CCceEEeCCCCCCCCCCceeeehh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----------PGVTHIGGDMFNSIPAANAIFMKW  227 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----------~ri~~~~~d~~~~~p~~D~i~~~~  227 (309)
                      .++.+|||||||+|..+.+++++ + .+ ++++|+ +.+++.++++          +|++++.+|..+.....|+|++. 
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~-v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-TH-IDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CE-EEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES-
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CE-EEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC-
Confidence            34579999999999999999988 7 77 999999 7888888753          58999999987655234999975 


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                          .++..  ..++++++.|+|||.+++.
T Consensus       147 ----~~dp~--~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          147 ----QEPDI--HRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             ----SCCCH--HHHHHHHTTEEEEEEEEEE
T ss_pred             ----CCChH--HHHHHHHHhcCCCcEEEEE
Confidence                24443  4899999999999999886

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.72  E-value=4e-09  Score=95.26  Aligned_cols=98  Identities=19%  Similarity=0.225  Sum_probs=72.3

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC-Cceee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA-ANAIF  224 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~-~D~i~  224 (309)
                      +..+|||||||+|..+..++++.|..+ ++++|+ +.+++.+++          .+|++++.+|..+.   .++ .|+|+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEK-AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            457999999999999999999878888 999999 667766543          36899999997653   223 49999


Q ss_pred             ehhhhhcCChh---HHHHHHHHHHHhcCCCcEEEEec
Q 021707          225 MKWVLATWTDD---ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       225 ~~~vlh~~~d~---~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +.-.-+.....   ...++++++++.|+|||.+++.-
T Consensus       169 ~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          169 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            74322201111   12589999999999999998863

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.68  E-value=2.8e-08  Score=86.43  Aligned_cols=96  Identities=8%  Similarity=-0.002  Sum_probs=78.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCC-CCC-Cceeeehhhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNS-IPA-ANAIFMKWVL  229 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~-~p~-~D~i~~~~vl  229 (309)
                      +..+.+|||||||.|-++..+.   |..+ ++++|+ +.+++.+++     ..+.++...|.... .|. +|++++.-++
T Consensus       103 ~~~p~~VLDlGCG~gpLal~~~---~~~~-y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~l  178 (253)
T 3frh_A          103 AETPRRVLDIACGLNPLALYER---GIAS-VWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLL  178 (253)
T ss_dssp             SCCCSEEEEETCTTTHHHHHHT---TCSE-EEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCH
T ss_pred             CCCCCeEEEecCCccHHHHHhc---cCCe-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHH
Confidence            4457899999999999999887   8888 999999 677777664     26788899999876 444 4999999999


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      |++.+++....+ ++.++|++++.++-.+
T Consensus       179 h~LE~q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          179 PLLEREQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HHHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             HHhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence            998877655555 8999999998877776

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.66  E-value=1.9e-08  Score=93.55  Aligned_cols=93  Identities=19%  Similarity=0.204  Sum_probs=69.2

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCC-CCC-Cceeeehhhhhc
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNS-IPA-ANAIFMKWVLAT  231 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~  231 (309)
                      +.+|||||||+|.++...++.. ..+ ++++|..++++.|++       .++|+++.+|+.+. +|+ +|+|+.-+.-+.
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aG-A~~-V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~  161 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAG-ARR-VYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG  161 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTT-CSE-EEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred             CCEEEEeCCCccHHHHHHHHhC-CCE-EEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence            4689999999999988777653 235 999998766666553       27899999999775 666 599986433222


Q ss_pred             C-ChhHHHHHHHHHHHhcCCCcEEE
Q 021707          232 W-TDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       232 ~-~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      + .+.....++....+.|+|||.++
T Consensus       162 l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          162 LLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             BTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             ccccchhhhHHHHHHhhCCCCceEC
Confidence            2 23345688888899999999876

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.65  E-value=4.9e-08  Score=93.16  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=82.9

Q ss_pred             HhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC---CC-C
Q 021707          152 LDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS---IP-A  219 (309)
Q Consensus       152 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~---~p-~  219 (309)
                      ...++ ...+.+|||+|||+|..+..+++..++ .+ ++++|. +..++.+++      .++++++.+|+.+.   ++ .
T Consensus       252 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~  329 (450)
T 2yxl_A          252 SIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGK-IYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEE  329 (450)
T ss_dssp             HHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSS
T ss_pred             HHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccC
Confidence            34444 556779999999999999999999887 67 999998 556665543      25799999998764   33 3


Q ss_pred             -Cceeee------hhhhhcCChh-------HH-------HHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 -ANAIFM------KWVLATWTDD-------EC-------KLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 -~D~i~~------~~vlh~~~d~-------~~-------~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                       .|+|++      ..+++..++.       +.       .++|+++.+.|+|||++++.+......
T Consensus       330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~  395 (450)
T 2yxl_A          330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKE  395 (450)
T ss_dssp             CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGG
T ss_pred             CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChh
Confidence             499985      3455544432       21       579999999999999999887665443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.64  E-value=1.9e-08  Score=89.70  Aligned_cols=109  Identities=12%  Similarity=0.025  Sum_probs=77.8

Q ss_pred             hhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-C-----C
Q 021707          153 DSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-I-----P  218 (309)
Q Consensus       153 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~-----p  218 (309)
                      ..++ ...+.+|||+|||+|..+..+++..++ .+ ++++|. +..++.++++      .+++++.+|+.+. .     +
T Consensus        77 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~  154 (274)
T 3ajd_A           77 IVLN-PREDDFILDMCAAPGGKTTHLAQLMKNKGT-IVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNE  154 (274)
T ss_dssp             HHHC-CCTTCEEEETTCTTCHHHHHHHHHTTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTT
T ss_pred             HHhC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhcc
Confidence            3443 556679999999999999999999877 67 999998 5666665432      5899999998653 1     3


Q ss_pred             C-Cceeeeh------hhhhc---CCh-------hHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          219 A-ANAIFMK------WVLAT---WTD-------DECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       219 ~-~D~i~~~------~vlh~---~~d-------~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      . .|+|++.      .+++.   |+.       ....++|+++.+.|+|||++++.......
T Consensus       155 ~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~  216 (274)
T 3ajd_A          155 IFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEV  216 (274)
T ss_dssp             CCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCT
T ss_pred             ccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCh
Confidence            3 4999875      22221   221       12368999999999999999987655443

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.62  E-value=7.2e-09  Score=101.79  Aligned_cols=103  Identities=10%  Similarity=-0.013  Sum_probs=81.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----C--CCceEEeCCCCCC---C-CC-Cceeeeh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----I--PGVTHIGGDMFNS---I-PA-ANAIFMK  226 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~--~ri~~~~~d~~~~---~-p~-~D~i~~~  226 (309)
                      .++.+|||||||.|.++..+++.  +.+ ++++|+ +.+++.|+.    .  -+|+|.+++..+.   . +. .|+|++.
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~--ga~-V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK--GAT-IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC--CCE-EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence            35679999999999999999998  567 999999 677776653    2  3689999988543   2 23 5999999


Q ss_pred             hhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          227 WVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .+|||.++.+...-+.++.+.|+++++.++...+..+.
T Consensus       142 e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~  179 (569)
T 4azs_A          142 SVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKEE  179 (569)
T ss_dssp             SCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTTS
T ss_pred             cchhcCCCHHHHHHHHHHHHHhccccceeeEEeccccc
Confidence            99999998876666677888898888888887665554

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.61  E-value=8.1e-08  Score=90.34  Aligned_cols=107  Identities=16%  Similarity=0.165  Sum_probs=78.3

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCC--Cceee
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPA--ANAIF  224 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~--~D~i~  224 (309)
                      ..+++.++ .....+|||+|||+|.++.++++++ +..+ ++++|+ +.+++.+   .+++++.+|+++..+.  .|+|+
T Consensus        29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~-i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii  103 (421)
T 2ih2_A           29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYR-FVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLIL  103 (421)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSE-EEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEE
T ss_pred             HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCe-EEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEE
Confidence            44455553 3345699999999999999999987 6778 999999 6666666   6899999999876433  49999


Q ss_pred             ehhhhh----------cCChhH-----------------HHHHHHHHHHhcCCCcEEEEeccc
Q 021707          225 MKWVLA----------TWTDDE-----------------CKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       225 ~~~vlh----------~~~d~~-----------------~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      ++-...          +.+++.                 ...+++++.+.|+|||+++++-+.
T Consensus       104 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~  166 (421)
T 2ih2_A          104 GNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  166 (421)
T ss_dssp             ECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             ECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence            852211          122222                 126799999999999999887543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.61  E-value=2.9e-08  Score=91.29  Aligned_cols=99  Identities=15%  Similarity=0.210  Sum_probs=78.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCC-----CceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCC-C-Cceeeeh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHF-----ICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIP-A-ANAIFMK  226 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p-~-~D~i~~~  226 (309)
                      ...+|+|+|||+|.++..+++..+.     .+ ++++|+ +.+++.++.+     .+++++.+|.+++.+ . .|+|+++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~-v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N  208 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVH-ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  208 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence            4679999999999999999998875     56 999998 6666666542     368999999988744 3 4999998


Q ss_pred             hhhhcCChhHH----------------HHHHHHHHHhcCCCcEEEEecc
Q 021707          227 WVLATWTDDEC----------------KLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       227 ~vlh~~~d~~~----------------~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      -.+++++.++.                ..+++++.+.|+|||+++++-+
T Consensus       209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            77776654432                2589999999999999887753

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.59  E-value=8.6e-08  Score=81.10  Aligned_cols=94  Identities=12%  Similarity=0.021  Sum_probs=72.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----C-CceEEeCCCCCCCCCCceeeehhhhhcC
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----P-GVTHIGGDMFNSIPAANAIFMKWVLATW  232 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----~-ri~~~~~d~~~~~p~~D~i~~~~vlh~~  232 (309)
                      ....+|||+|||+|.++..+++..+ .+ ++++|. +.+++.++++    . +++++.+|+.+.....|+|++...+|.+
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~D~v~~~~p~~~~  125 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGA-KE-VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFGSQ  125 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCSSS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcCCCCCEEEEcCCCccc
Confidence            3467999999999999999998743 36 999998 6777766543    2 7999999997632235999999888887


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          233 TDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ......++|+++.+.+  |+ +++.
T Consensus       126 ~~~~~~~~l~~~~~~l--~~-~~~~  147 (207)
T 1wy7_A          126 RKHADRPFLLKAFEIS--DV-VYSI  147 (207)
T ss_dssp             STTTTHHHHHHHHHHC--SE-EEEE
T ss_pred             cCCchHHHHHHHHHhc--Cc-EEEE
Confidence            7555568899999998  44 4443

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.58  E-value=1.5e-08  Score=88.73  Aligned_cols=110  Identities=12%  Similarity=0.113  Sum_probs=78.1

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----CCceEEeCCCCCC-CCC-
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----PGVTHIGGDMFNS-IPA-  219 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----~ri~~~~~d~~~~-~p~-  219 (309)
                      ....+++.++ .....+|||||||+|.++..+++..  .+ ++++|. +.+++.++++    ++++++.+|+.+. ++. 
T Consensus        17 ~~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~-v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~   92 (245)
T 1yub_A           17 VLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQ-VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNK   92 (245)
T ss_dssp             THHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SE-EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCS
T ss_pred             HHHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--Ce-EEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccC
Confidence            3456677775 6677899999999999999999985  66 999999 6777777664    5799999999874 442 


Q ss_pred             CceeeehhhhhcCChhHHHHHH--------------HHHHHhcCCCcEEEEeccc
Q 021707          220 ANAIFMKWVLATWTDDECKLIM--------------ENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL--------------~~~~~aL~pgG~l~i~e~~  260 (309)
                      ..+.++.+.-++.+.....+++              +.+.+.|+|||++.+....
T Consensus        93 ~~f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~~  147 (245)
T 1yub_A           93 QRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLHT  147 (245)
T ss_dssp             SEEEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTTT
T ss_pred             CCcEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhee
Confidence            2334444443333333333333              5688899999988776543

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.55  E-value=1.1e-08  Score=84.52  Aligned_cols=87  Identities=14%  Similarity=0.060  Sum_probs=68.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--CCceEEeCCCCCC-C---CC--Cceeeehhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--PGVTHIGGDMFNS-I---PA--ANAIFMKWV  228 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--~ri~~~~~d~~~~-~---p~--~D~i~~~~v  228 (309)
                      ...+.+|||||||.                 +.+|. +.+++.++++  .+++++.+|+.+. .   +.  .|+|++.++
T Consensus        10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~   72 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLV   72 (176)
T ss_dssp             CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCS
T ss_pred             CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECCh
Confidence            56678999999995                 12676 6677777643  4699999998754 3   43  399999999


Q ss_pred             hhcC-ChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          229 LATW-TDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       229 lh~~-~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +|++ ++.  .++|++++++|+|||++++.++....
T Consensus        73 l~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~  106 (176)
T 2ld4_A           73 PGSTTLHS--AEILAEIARILRPGGCLFLKEPVETA  106 (176)
T ss_dssp             TTCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESS
T ss_pred             hhhcccCH--HHHHHHHHHHCCCCEEEEEEcccccc
Confidence            9999 665  58999999999999999998776543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.55  E-value=6.5e-08  Score=84.77  Aligned_cols=83  Identities=6%  Similarity=0.168  Sum_probs=61.1

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC-C
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA-A  220 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~-~  220 (309)
                      ...+++.++ .....+|||||||+|.++..++++.  .+ ++++|. +.+++.+++    .++++++.+|+.+. ++. .
T Consensus        19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~   94 (244)
T 1qam_A           19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NF-VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ   94 (244)
T ss_dssp             HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred             HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--Ce-EEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCC
Confidence            455666664 6667899999999999999999986  56 999998 667666543    36899999999874 553 3


Q ss_pred             ceeeehhhhhcCCh
Q 021707          221 NAIFMKWVLATWTD  234 (309)
Q Consensus       221 D~i~~~~vlh~~~d  234 (309)
                      ++.++++..++++.
T Consensus        95 ~~~vv~nlPy~~~~  108 (244)
T 1qam_A           95 SYKIFGNIPYNIST  108 (244)
T ss_dssp             CCEEEEECCGGGHH
T ss_pred             CeEEEEeCCcccCH
Confidence            55555555555443

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.53  E-value=7e-08  Score=87.15  Aligned_cols=101  Identities=13%  Similarity=0.194  Sum_probs=69.9

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC-CC
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS-IP  218 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~-~p  218 (309)
                      +...+++..+ .....+|||||||+|.++..+++.  ..+ ++++|. +.+++.+++      .++++++.+|+.+. .+
T Consensus        30 i~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~-v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~  105 (299)
T 2h1r_A           30 ILDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKK-VITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP  105 (299)
T ss_dssp             HHHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSE-EEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC
T ss_pred             HHHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc
Confidence            3455666665 666789999999999999999987  346 999998 667766653      26899999999875 44


Q ss_pred             CCceeeehhhhhcCChhHHHHHH---------------HHHHHhcCCCc
Q 021707          219 AANAIFMKWVLATWTDDECKLIM---------------ENCYKALLAGG  252 (309)
Q Consensus       219 ~~D~i~~~~vlh~~~d~~~~~iL---------------~~~~~aL~pgG  252 (309)
                      ..|+|+++ ..++++.+...++|               ..+.+.++|+|
T Consensus       106 ~~D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          106 KFDVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             CCSEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             cCCEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence            46998874 44556666666666               33566777665

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.52  E-value=4.2e-08  Score=89.93  Aligned_cols=100  Identities=14%  Similarity=0.115  Sum_probs=73.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------C-CceEEeCCCCCCC------CC-Ccee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------P-GVTHIGGDMFNSI------PA-ANAI  223 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~-ri~~~~~d~~~~~------p~-~D~i  223 (309)
                      +..+|||+|||+|.++..+++...  + ++++|. +.+++.++++       + +++++.+|+++..      .. .|+|
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga--~-V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I  229 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA--E-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  229 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC--E-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence            456999999999999999998744  7 999998 6777777642       2 5999999987642      22 5999


Q ss_pred             eehhhhhc-------C-ChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          224 FMKWVLAT-------W-TDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       224 ~~~~vlh~-------~-~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      ++.-....       + ..++..++++++.+.|+|||.+++......
T Consensus       230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~  276 (332)
T 2igt_A          230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI  276 (332)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred             EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence            98322100       0 023456899999999999999777655543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.48  E-value=7e-08  Score=92.11  Aligned_cols=108  Identities=12%  Similarity=0.086  Sum_probs=78.7

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCC
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPA  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~  219 (309)
                      +...++ ...+.+|||+|||+|..+..+++..++ .+ ++++|. +.+++.++++      . |+++.+|..+.   .+.
T Consensus        93 ~a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~-V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~  169 (464)
T 3m6w_A           93 VGVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGL-LLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGT  169 (464)
T ss_dssp             HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCS
T ss_pred             HHHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccc
Confidence            344444 556789999999999999999999876 56 999998 6677666542      4 89999997653   233


Q ss_pred             -Cceeee-------------hhhhhcCChhHH-------HHHHHHHHHhcCCCcEEEEecccc
Q 021707          220 -ANAIFM-------------KWVLATWTDDEC-------KLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       220 -~D~i~~-------------~~vlh~~~d~~~-------~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                       .|+|++             ..+...|..++.       .++|+++.+.|+|||+|+......
T Consensus       170 ~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          170 YFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             CEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             cCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence             499985             122223443332       789999999999999998765443

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.48  E-value=2.3e-07  Score=87.89  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=80.9

Q ss_pred             HhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC---CC-C-C
Q 021707          152 LDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS---IP-A-A  220 (309)
Q Consensus       152 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~---~p-~-~  220 (309)
                      ...++ ...+.+|||+|||+|..+..+++..|+.+ ++++|. +..++.++++     -+++++.+|+.+.   ++ . .
T Consensus       239 ~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~f  316 (429)
T 1sqg_A          239 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF  316 (429)
T ss_dssp             HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred             HHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCC
Confidence            34444 55667999999999999999999998878 999998 5555554432     3589999999765   23 2 4


Q ss_pred             ceeee------hhhhhcCCh-------hHH-------HHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          221 NAIFM------KWVLATWTD-------DEC-------KLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       221 D~i~~------~~vlh~~~d-------~~~-------~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |+|++      ..+++..++       ++.       .++|+++.+.|+|||++++....+..
T Consensus       317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~  379 (429)
T 1sqg_A          317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  379 (429)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence            99985      234444333       222       58899999999999999998765543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.45  E-value=3.4e-07  Score=87.90  Aligned_cols=103  Identities=18%  Similarity=0.249  Sum_probs=77.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCC-Cceeeeh-
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPA-ANAIFMK-  226 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~-~D~i~~~-  226 (309)
                      .+.+|||+|||+|..+..+++..++ .+ ++++|. +.+++.++++      .+++++.+|..+.   .+. .|.|++. 
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~-V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGA-ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDA  195 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECC
Confidence            6689999999999999999998764 67 999998 6667666542      5799999998763   333 4999861 


Q ss_pred             -----hhhh-------cCChhH-------HHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          227 -----WVLA-------TWTDDE-------CKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       227 -----~vlh-------~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                           .+++       .|+.++       ..++|+++.+.|+|||+|++.......
T Consensus       196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~~  251 (479)
T 2frx_A          196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQ  251 (479)
T ss_dssp             CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCSS
T ss_pred             CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCCc
Confidence                 2232       344332       357899999999999999887654443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.44  E-value=9.2e-08  Score=85.40  Aligned_cols=98  Identities=14%  Similarity=0.007  Sum_probs=75.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC--Cceeeehh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA--ANAIFMKW  227 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~--~D~i~~~~  227 (309)
                      ...+.+|||+|||+|.+++.++++. ..+ ++++|+ |..++.+++       .++++++.+|.++..+.  +|.|++..
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~-V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~  200 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG-KAK-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY  200 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT-CCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc-CCe-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECC
Confidence            3457899999999999999998763 567 999998 667766654       27899999999876444  59888763


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      ..      .+.+.|..+.+.|+|||.|.+.+.+..+
T Consensus       201 p~------~~~~~l~~a~~~lk~gG~ih~~~~~~e~  230 (278)
T 3k6r_A          201 VV------RTHEFIPKALSIAKDGAIIHYHNTVPEK  230 (278)
T ss_dssp             CS------SGGGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred             CC------cHHHHHHHHHHHcCCCCEEEEEeeeccc
Confidence            21      1246788888999999999888776544

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.36  E-value=1.9e-07  Score=85.71  Aligned_cols=94  Identities=12%  Similarity=0.020  Sum_probs=73.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCCCCceeeehhhhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIPAANAIFMKWVLA  230 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p~~D~i~~~~vlh  230 (309)
                      ....+|||+|||+|.++.. ++  ...+ ++++|. +.+++.++++       ++++++.+|.++.....|+|++.-.  
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~-V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--  267 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKK-IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--  267 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT--
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc--
Confidence            3567999999999999999 76  4667 999998 7777776542       5899999999876633599998421  


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                          ....++++.+.+.|+|||.+++.+....
T Consensus       268 ----~~~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          268 ----KFAHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             ----TTGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             ----HhHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence                1123789999999999999999887665

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.35  E-value=6.2e-07  Score=80.49  Aligned_cols=95  Identities=13%  Similarity=0.069  Sum_probs=68.1

Q ss_pred             CCCcceEEEecC------CccHHHHHHHHhcC-CCceEEEeechhHHhhCCCCCCceE-EeCCCCCC-CCC-Cceeeehh
Q 021707          158 FKGVKRLVDVGG------SAGDCLRMILQKHH-FICEGINFDLPEVVGEAPSIPGVTH-IGGDMFNS-IPA-ANAIFMKW  227 (309)
Q Consensus       158 ~~~~~~vlDvG~------G~G~~~~~l~~~~p-~~~~~~~~D~p~~~~~a~~~~ri~~-~~~d~~~~-~p~-~D~i~~~~  227 (309)
                      .....+|||+||      |+|.  ..+++..| +.+ ++++|+.+.      .+++++ +.+|+.+. .+. .|+|++..
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~-V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~  131 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTL-LVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIISDM  131 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCE-EEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCE-EEEEECCCC------CCCCEEEEECccccCCccCcccEEEEcC
Confidence            556789999999      4477  44566666 678 999999544      147999 99999875 344 49999753


Q ss_pred             hhhc-----CC----hhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          228 VLAT-----WT----DDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       228 vlh~-----~~----d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      ..+.     ..    .....++|+.+++.|+|||++++..+..
T Consensus       132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~  174 (290)
T 2xyq_A          132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  174 (290)
T ss_dssp             CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            2211     01    1234589999999999999999865443

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.35  E-value=6.1e-07  Score=84.03  Aligned_cols=110  Identities=5%  Similarity=-0.075  Sum_probs=79.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC--------------------------------------CceEE
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF--------------------------------------ICEGI  189 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~  189 (309)
                      +..++.... |....+|+|.+||+|.++++.+....+                                      .+ ++
T Consensus       190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V~  267 (393)
T 3k0b_A          190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN-II  267 (393)
T ss_dssp             HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-EE
T ss_pred             HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce-EE
Confidence            344555664 888889999999999999998876554                                      56 99


Q ss_pred             Eeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCC-Cceeeehhhhhc-C-ChhHHHHHHHHHHHhcCC--CcEEE
Q 021707          190 NFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPA-ANAIFMKWVLAT-W-TDDECKLIMENCYKALLA--GGKLI  255 (309)
Q Consensus       190 ~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~-~-~d~~~~~iL~~~~~aL~p--gG~l~  255 (309)
                      ++|. +.+++.++++       ++|+++.+|+++. .+. .|+|+++--.+. . .+++..++.+.+.+.|++  |++++
T Consensus       268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~  347 (393)
T 3k0b_A          268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY  347 (393)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence            9998 7788777652       5799999999875 333 499998733221 1 124456677777777764  88888


Q ss_pred             Eecc
Q 021707          256 ACEP  259 (309)
Q Consensus       256 i~e~  259 (309)
                      |+..
T Consensus       348 iit~  351 (393)
T 3k0b_A          348 VLTS  351 (393)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8744

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.33  E-value=3.1e-07  Score=85.48  Aligned_cols=97  Identities=11%  Similarity=-0.061  Sum_probs=72.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CC-C-Cceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IP-A-ANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p-~-~D~i~~~  226 (309)
                      +....+|||+|||+|.++.++++..+..+ ++++|. +.+++.++++       ++++++.+|+.+. .+ . .|+|+++
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~-v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGE-IIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN  293 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSC-EEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence            55678999999999999999999988778 999998 7788777653       5899999999874 33 3 4999986


Q ss_pred             hhhhcCC------hhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          227 WVLATWT------DDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       227 ~vlh~~~------d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      -..+...      .+--.++++.+++.|  +|+++++
T Consensus       294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i  328 (373)
T 3tm4_A          294 LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFI  328 (373)
T ss_dssp             CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEE
T ss_pred             CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEE
Confidence            4433211      111367889999988  4455544

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.33  E-value=1.8e-06  Score=80.55  Aligned_cols=110  Identities=10%  Similarity=-0.029  Sum_probs=81.9

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC--------------------------------------CceEE
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF--------------------------------------ICEGI  189 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~  189 (309)
                      +..++.... |.....|+|.+||+|.++++.+....+                                      .+ ++
T Consensus       183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-v~  260 (384)
T 3ldg_A          183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD-IS  260 (384)
T ss_dssp             HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-EE
T ss_pred             HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce-EE
Confidence            344555554 888889999999999999998876554                                      56 99


Q ss_pred             Eeec-hhHHhhCCCC-------CCceEEeCCCCCC-CCC-Cceeeehhhhhc-C-ChhHHHHHHHHHHHhcCC--CcEEE
Q 021707          190 NFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IPA-ANAIFMKWVLAT-W-TDDECKLIMENCYKALLA--GGKLI  255 (309)
Q Consensus       190 ~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~-~-~d~~~~~iL~~~~~aL~p--gG~l~  255 (309)
                      ++|. +.+++.++++       ++|+++.+|+++. .+. .|+|+++--.+. + .+++..++.+.+.+.|++  |++++
T Consensus       261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~  340 (384)
T 3ldg_A          261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF  340 (384)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence            9998 7788777652       5799999999875 333 499998743321 2 335667788888888875  89988


Q ss_pred             Eecc
Q 021707          256 ACEP  259 (309)
Q Consensus       256 i~e~  259 (309)
                      |+-.
T Consensus       341 iit~  344 (384)
T 3ldg_A          341 ILTN  344 (384)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            8754

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.31  E-value=3e-07  Score=87.61  Aligned_cols=110  Identities=13%  Similarity=0.119  Sum_probs=78.5

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---CCC
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---IPA  219 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~p~  219 (309)
                      +...++ ...+.+|||+|||+|..+..+++..++ .+ ++++|. +..++.++++      .++.++.+|..+.   .+.
T Consensus        97 ~~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~-V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~  174 (456)
T 3m4x_A           97 VGTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGL-LVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSG  174 (456)
T ss_dssp             HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTT
T ss_pred             HHHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccc
Confidence            344454 556789999999999999999998765 56 999998 6666665542      5799999987653   333


Q ss_pred             -Cceeeehh------hh-------hcCChhH-------HHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          220 -ANAIFMKW------VL-------ATWTDDE-------CKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       220 -~D~i~~~~------vl-------h~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                       .|.|++.-      ++       ..|..++       ..++|+++.+.|+|||+|+.......
T Consensus       175 ~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  238 (456)
T 3m4x_A          175 FFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA  238 (456)
T ss_dssp             CEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred             cCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence             49998621      22       2233222       23889999999999999987654443

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.31  E-value=1.6e-07  Score=88.03  Aligned_cols=100  Identities=15%  Similarity=0.093  Sum_probs=74.2

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCC------CC-Cceee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI------PA-ANAIF  224 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~------p~-~D~i~  224 (309)
                      +..+|||+|||+|.++..+++. +..+ ++++|. +.+++.++++       ++++++.+|+++..      +. .|+|+
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~-v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi  294 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADE-VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  294 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence            5679999999999999999987 3346 999998 6777766542       28999999987642      22 49999


Q ss_pred             ehhhhhcCCh-------hHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          225 MKWVLATWTD-------DECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       225 ~~~vlh~~~d-------~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      +.-.....+.       ....++++++.+.|+|||.+++.....
T Consensus       295 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          295 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            8422111111       345789999999999999988886543

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.31  E-value=1.6e-07  Score=87.61  Aligned_cols=99  Identities=17%  Similarity=0.101  Sum_probs=74.2

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC------CC-Cceeee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI------PA-ANAIFM  225 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~------p~-~D~i~~  225 (309)
                      +..+|||+|||+|.++..+++.  ..+ ++++|. +.+++.++++      ++++++.+|+++..      +. .|+|++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FRE-VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            5679999999999999999988  456 999998 6777776542      45999999987642      22 499997


Q ss_pred             hhhhhcCCh-------hHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          226 KWVLATWTD-------DECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       226 ~~vlh~~~d-------~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      .-.....+.       ....++++++.+.|+|||.+++.....
T Consensus       286 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          286 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            322111111       345689999999999999998886543

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.24  E-value=3.2e-07  Score=85.73  Aligned_cols=99  Identities=10%  Similarity=0.045  Sum_probs=72.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------C--CceEEeCCCCCCCC-------CCce
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------P--GVTHIGGDMFNSIP-------AANA  222 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~--ri~~~~~d~~~~~p-------~~D~  222 (309)
                      .+..+|||+|||+|.++..+++.. ..+ ++++|. +.+++.++++      +  +++++.+|+++..+       ..|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~-V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~  288 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMA-TTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  288 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSE-EEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence            456799999999999999999863 235 999998 6777776642      3  89999999876321       2499


Q ss_pred             eeehhhh-----hcCCh--hHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          223 IFMKWVL-----ATWTD--DECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       223 i~~~~vl-----h~~~d--~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      |++.-..     +...+  ....++++.+.+.|+|||.+++...
T Consensus       289 Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          289 IIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             EEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            9974222     12222  2345788999999999999887754

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.22  E-value=1.9e-06  Score=80.46  Aligned_cols=110  Identities=14%  Similarity=-0.003  Sum_probs=80.4

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC--------------------------------------CceEE
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF--------------------------------------ICEGI  189 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~  189 (309)
                      +..++.... |....+|+|.+||+|.++++++....+                                      .+ ++
T Consensus       184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V~  261 (385)
T 3ldu_A          184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK-IY  261 (385)
T ss_dssp             HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC-EE
T ss_pred             HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce-EE
Confidence            344555554 878889999999999999999877433                                      57 99


Q ss_pred             Eeec-hhHHhhCCCC-------CCceEEeCCCCCCC-CC-Cceeeehhhhhc-CC-hhHHHHHHHHHHHhcCC--CcEEE
Q 021707          190 NFDL-PEVVGEAPSI-------PGVTHIGGDMFNSI-PA-ANAIFMKWVLAT-WT-DDECKLIMENCYKALLA--GGKLI  255 (309)
Q Consensus       190 ~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~-p~-~D~i~~~~vlh~-~~-d~~~~~iL~~~~~aL~p--gG~l~  255 (309)
                      ++|. +.+++.++++       ++|++..+|+++.. +. .|+|+++-.... +. .++..++.+++.+.|++  |+.++
T Consensus       262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~  341 (385)
T 3ldu_A          262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYY  341 (385)
T ss_dssp             EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEE
Confidence            9998 7788887653       47999999998753 33 499998644321 12 34566777777777765  88888


Q ss_pred             Eecc
Q 021707          256 ACEP  259 (309)
Q Consensus       256 i~e~  259 (309)
                      |+..
T Consensus       342 iit~  345 (385)
T 3ldu_A          342 LITS  345 (385)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            8744

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.22  E-value=7.7e-07  Score=84.70  Aligned_cols=110  Identities=15%  Similarity=0.096  Sum_probs=79.0

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-------------CCCceEEEeec-hhHHhhCCCC------C--C
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-------------HFICEGINFDL-PEVVGEAPSI------P--G  205 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~~~~D~-p~~~~~a~~~------~--r  205 (309)
                      +..+++.+. .....+|+|.|||+|.++..+.+..             +..+ ++++|+ +.+++.++.+      .  +
T Consensus       160 ~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~-i~G~Ei~~~~~~lA~~nl~l~g~~~~~  237 (445)
T 2okc_A          160 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA-LHGVDNTPLVVTLASMNLYLHGIGTDR  237 (445)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT-EEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeE-EEEEeCCHHHHHHHHHHHHHhCCCcCC
Confidence            334455553 4456799999999999999988764             4567 999998 6666655431      2  7


Q ss_pred             ceEEeCCCCCCC-C-CCceeeehhhhhcCChh---------------HHHHHHHHHHHhcCCCcEEEEecc
Q 021707          206 VTHIGGDMFNSI-P-AANAIFMKWVLATWTDD---------------ECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       206 i~~~~~d~~~~~-p-~~D~i~~~~vlh~~~d~---------------~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ++++++|.+... . ..|+|+++-.++.....               .....++.+.+.|+|||++.++-+
T Consensus       238 ~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          238 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            889999998753 2 35999987555432211               124789999999999999987764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.20  E-value=1.7e-06  Score=85.23  Aligned_cols=126  Identities=18%  Similarity=0.139  Sum_probs=82.6

Q ss_pred             hhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcC---CCCCcceEEEecCCccHHHHHHHHhcC----CCceEEEeech
Q 021707          122 AYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYN---GFKGVKRLVDVGGSAGDCLRMILQKHH----FICEGINFDLP  194 (309)
Q Consensus       122 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~---~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~~D~p  194 (309)
                      .|+.+++++..-+.|.+|+.       ..+.+...   ...+...|+|||||+|-+....+++..    .++ +.+++-.
T Consensus       323 tYevFEkD~vKy~~Ye~AI~-------~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vk-VyAVEkn  394 (637)
T 4gqb_A          323 TYEVFEKDPIKYSQYQQAIY-------KCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIK-LYAVEKN  394 (637)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH-------HHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEE-EEEEESC
T ss_pred             hhhhhcCChhhHHHHHHHHH-------HHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcE-EEEEECC
Confidence            57778889888888888875       22333221   123456899999999998444444322    235 7889986


Q ss_pred             hHHhhCCC-------CCCceEEeCCCCCC-CCC-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEE
Q 021707          195 EVVGEAPS-------IPGVTHIGGDMFNS-IPA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       195 ~~~~~a~~-------~~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      .+...+++       .++|+++.+|+.+- .|+ +|+|+.=+.=...-.+-...+|-...+-|+|||.++
T Consensus       395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            66555543       28899999999875 776 599984221111122224467777788899998753

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.20  E-value=2.8e-06  Score=74.55  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--CCceEEeCCCCCC-CCC-C-c
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--PGVTHIGGDMFNS-IPA-A-N  221 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--~ri~~~~~d~~~~-~p~-~-D  221 (309)
                      ...+++..+ .....+|||||||+|.++..++++ +..+ ++++|. +.+++.++++  .+++++.+|+.+. ++. . +
T Consensus        20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~-v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~   96 (249)
T 3ftd_A           20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKK-LYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKE   96 (249)
T ss_dssp             HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSE-EEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSS
T ss_pred             HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCe-EEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCC
Confidence            455666665 666789999999999999999987 4567 999999 6777777654  6799999999874 443 1 5


Q ss_pred             eeeehhhhhcCChh
Q 021707          222 AIFMKWVLATWTDD  235 (309)
Q Consensus       222 ~i~~~~vlh~~~d~  235 (309)
                      .+++.+.-++.+.+
T Consensus        97 ~~vv~NlPy~i~~~  110 (249)
T 3ftd_A           97 LKVVGNLPYNVASL  110 (249)
T ss_dssp             EEEEEECCTTTHHH
T ss_pred             cEEEEECchhccHH
Confidence            56666665555443

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.18  E-value=4.4e-07  Score=85.03  Aligned_cols=97  Identities=18%  Similarity=0.080  Sum_probs=72.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------C-CceEEeCCCCCCC------CC-Ccee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------P-GVTHIGGDMFNSI------PA-ANAI  223 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~-ri~~~~~d~~~~~------p~-~D~i  223 (309)
                      +..+|||+|||+|.++..+++.. ..+ ++++|. +.+++.++++       + +++++.+|+++..      +. .|+|
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~-V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I  297 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence            45799999999999999999874 346 999998 6677666542       2 7899999987642      22 4999


Q ss_pred             eehhhh--------hcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          224 FMKWVL--------ATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       224 ~~~~vl--------h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ++.-..        +... ....+++.++.+.|+|||.+++...
T Consensus       298 i~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          298 VMDPPKFVENKSQLMGAC-RGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             EECCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            885321        1111 3457899999999999999888654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.18  E-value=3e-06  Score=80.34  Aligned_cols=99  Identities=11%  Similarity=0.127  Sum_probs=69.2

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC---
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP---  218 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p---  218 (309)
                      ..+++.++ .....+|||+|||+|.++..+++.  ..+ ++++|. +.+++.++++      ++++++.+|+.+.++   
T Consensus       276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~-V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~  351 (433)
T 1uwv_A          276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AAS-VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP  351 (433)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred             HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh
Confidence            34445553 556679999999999999999987  456 999998 6777777642      589999999987432   


Q ss_pred             ----CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          219 ----AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       219 ----~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                          ..|+|++.-     |-..+.++++.+.+ ++|++.+++.
T Consensus       352 ~~~~~fD~Vv~dP-----Pr~g~~~~~~~l~~-~~p~~ivyvs  388 (433)
T 1uwv_A          352 WAKNGFDKVLLDP-----ARAGAAGVMQQIIK-LEPIRIVYVS  388 (433)
T ss_dssp             GGTTCCSEEEECC-----CTTCCHHHHHHHHH-HCCSEEEEEE
T ss_pred             hhcCCCCEEEECC-----CCccHHHHHHHHHh-cCCCeEEEEE
Confidence                249998732     22212245555543 6888766663

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.16  E-value=2.5e-06  Score=76.78  Aligned_cols=89  Identities=10%  Similarity=0.077  Sum_probs=64.3

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC--
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA--  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~--  219 (309)
                      ...+++..+ .....+|||||||+|.++..+++.  ..+ ++++|. +.+++.+++    .++++++.+|+.+. ++.  
T Consensus        39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~-V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKK-VYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSC
T ss_pred             HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCE-EEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCC
Confidence            455667765 666789999999999999999998  356 999998 667766654    37999999999874 555  


Q ss_pred             CceeeehhhhhcCChhHHHHHH
Q 021707          220 ANAIFMKWVLATWTDDECKLIM  241 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL  241 (309)
                      .|.|+.+. -++++.+-..++|
T Consensus       115 fD~Iv~Nl-Py~is~pil~~lL  135 (295)
T 3gru_A          115 FNKVVANL-PYQISSPITFKLI  135 (295)
T ss_dssp             CSEEEEEC-CGGGHHHHHHHHH
T ss_pred             ccEEEEeC-cccccHHHHHHHH
Confidence            48888553 3334433333333

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.14  E-value=3.5e-06  Score=79.69  Aligned_cols=89  Identities=8%  Similarity=-0.040  Sum_probs=65.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC-Cceeeehhhhhc
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA-ANAIFMKWVLAT  231 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~-~D~i~~~~vlh~  231 (309)
                      +..+|||+|||+|.++..+++..  .+ ++++|. +.+++.++++      + ++++.+|+.+..+. .|+|++.-.-..
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~~--~~-V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g  365 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKRG--FN-VKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG  365 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred             CCCEEEEeeccchHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence            45799999999999999999873  46 999998 6788777653      3 99999999876554 599998432111


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ..    ..+++.+. .|+|+|.+++.
T Consensus       366 ~~----~~~~~~l~-~l~p~givyvs  386 (425)
T 2jjq_A          366 LH----PRLVKRLN-REKPGVIVYVS  386 (425)
T ss_dssp             SC----HHHHHHHH-HHCCSEEEEEE
T ss_pred             hH----HHHHHHHH-hcCCCcEEEEE
Confidence            11    13555554 48999988876

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.13  E-value=2e-06  Score=80.45  Aligned_cols=101  Identities=13%  Similarity=0.047  Sum_probs=72.5

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC---CCC-Cceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS---IPA-ANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~---~p~-~D~i~~~~vl  229 (309)
                      .+.+|||+|||+|.++..+++.  +.+ ++++|+ +.+++.++++     -..++..+|.++.   .+. .|+|++.-..
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~--ga~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~  290 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK--GAY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPT  290 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred             CCCeEEEcccchhHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence            3679999999999999999987  556 999998 6777777653     1235778898764   233 5999875322


Q ss_pred             hcCCh-------hHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          230 ATWTD-------DECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       230 h~~~d-------~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      ...+.       ..-.++++.+.+.|+|||+|++.......
T Consensus       291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~  331 (393)
T 4dmg_A          291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL  331 (393)
T ss_dssp             CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence            11111       23458999999999999999877655443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.10  E-value=2.5e-06  Score=76.43  Aligned_cols=98  Identities=18%  Similarity=0.232  Sum_probs=73.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----------CCCceEEeCCCCCCCC---C-Cce
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----------IPGVTHIGGDMFNSIP---A-ANA  222 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----------~~ri~~~~~d~~~~~p---~-~D~  222 (309)
                      +++.+||-||+|.|..+.++++..|..+ ++++|+ |.|++.+++           .+|++++.+|.++.+.   + .|+
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~-v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVES-ITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcce-EEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            4568999999999999999998877777 999999 777776653           3899999999987632   2 398


Q ss_pred             eeehhhhhcCChh---HHHHHHHHHHHhcCCCcEEEEec
Q 021707          223 IFMKWVLATWTDD---ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       223 i~~~~vlh~~~d~---~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      |+.--. ......   -..+.++.++++|+|||.++..-
T Consensus       161 Ii~D~~-dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          161 IISDCT-DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             EEESCC-CCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEeCC-CcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence            885321 001100   12478999999999999988764

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.09  E-value=1.5e-05  Score=73.96  Aligned_cols=102  Identities=17%  Similarity=0.167  Sum_probs=72.9

Q ss_pred             cceEEEecCCccHHHHHH--------HHhc-------CCCceEEEeechh-----HH---hhCCC----------C-CC-
Q 021707          161 VKRLVDVGGSAGDCLRMI--------LQKH-------HFICEGINFDLPE-----VV---GEAPS----------I-PG-  205 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l--------~~~~-------p~~~~~~~~D~p~-----~~---~~a~~----------~-~r-  205 (309)
                      .-+|+|+|||+|..+..+        .+++       |.++ +..-|+|.     +.   ...++          . .+ 
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~-v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFT-AFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEE-EEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCcee-EEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence            578999999999988876        3444       7788 99999863     22   22211          0 11 


Q ss_pred             --ceEEeCCCCCC-CCC-C-ceeeehhhhhcCCh------------------------------------hHHHHHHHHH
Q 021707          206 --VTHIGGDMFNS-IPA-A-NAIFMKWVLATWTD------------------------------------DECKLIMENC  244 (309)
Q Consensus       206 --i~~~~~d~~~~-~p~-~-D~i~~~~vlh~~~d------------------------------------~~~~~iL~~~  244 (309)
                        +.-++|.|+.. +|. . |+++.+.+||..++                                    .|-..+|+..
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r  211 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR  211 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              34556788765 776 3 99999999997651                                    1345679999


Q ss_pred             HHhcCCCcEEEEeccccCC
Q 021707          245 YKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       245 ~~aL~pgG~l~i~e~~~~~  263 (309)
                      ++.|+|||++++.=.-.++
T Consensus       212 a~eL~pGG~mvl~~~gr~~  230 (374)
T 3b5i_A          212 AAEVKRGGAMFLVCLGRTS  230 (374)
T ss_dssp             HHHEEEEEEEEEEEEECCC
T ss_pred             HHHhCCCCEEEEEEecCCC
Confidence            9999999999987665544

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.09  E-value=3.9e-06  Score=74.60  Aligned_cols=91  Identities=8%  Similarity=0.001  Sum_probs=65.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC---CCCceEEeCCCCCC-CCC--C
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS---IPGVTHIGGDMFNS-IPA--A  220 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~---~~ri~~~~~d~~~~-~p~--~  220 (309)
                      .+.+++..+ .... +|||||||+|.++..++++.  .+ ++++|. +.+++.+++   .++++++.+|+++. ++.  .
T Consensus        36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~-V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~  110 (271)
T 3fut_A           36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AE-VTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQ  110 (271)
T ss_dssp             HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CC-EEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCT
T ss_pred             HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CE-EEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccC
Confidence            345666665 6666 99999999999999999985  56 999998 666666543   36899999999874 442  2


Q ss_pred             ceeeehhhhhcCChhHHHHHHHH
Q 021707          221 NAIFMKWVLATWTDDECKLIMEN  243 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~  243 (309)
                      ...+..|.-++.+.+-..++|..
T Consensus       111 ~~~iv~NlPy~iss~il~~ll~~  133 (271)
T 3fut_A          111 GSLLVANLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             TEEEEEEECSSCCHHHHHHHHHH
T ss_pred             ccEEEecCcccccHHHHHHHhcC
Confidence            33455666667776655555544

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.03  E-value=1.5e-06  Score=77.66  Aligned_cols=67  Identities=12%  Similarity=0.181  Sum_probs=54.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC--CceEEEeec-hhHHhhCCCC--CCceEEeCCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF--ICEGINFDL-PEVVGEAPSI--PGVTHIGGDMFNS  216 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~~D~-p~~~~~a~~~--~ri~~~~~d~~~~  216 (309)
                      ...+++..+ .....+|||||||+|.++..++++.+.  .+ ++++|. +.+++.++++  ++++++.+|+.+.
T Consensus        31 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~-V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           31 IDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSP-LHAVELDRDLIGRLEQRFGELLELHAGDALTF  102 (279)
T ss_dssp             HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBC-EEEEECCHHHHHHHHHHHGGGEEEEESCGGGC
T ss_pred             HHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCe-EEEEECCHHHHHHHHHhcCCCcEEEECChhcC
Confidence            345666664 666789999999999999999998865  66 999998 6777777654  7899999999864

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.01  E-value=7.6e-06  Score=71.94  Aligned_cols=91  Identities=9%  Similarity=0.041  Sum_probs=62.7

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----CCceEEeCCCCCC-CCC-
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----PGVTHIGGDMFNS-IPA-  219 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----~ri~~~~~d~~~~-~p~-  219 (309)
                      +...+++..+ .....+|||||||+|.++. + ++.+..+ ++++|. +.+++.++++    ++++++.+|+.+. ++. 
T Consensus         9 i~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~-v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~   84 (252)
T 1qyr_A            9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQ-LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGEL   84 (252)
T ss_dssp             HHHHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSC-EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHH
T ss_pred             HHHHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCe-EEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHh
Confidence            3455666665 6667899999999999999 5 4556666 999998 7788877653    5899999999873 322 


Q ss_pred             -----CceeeehhhhhcCChhHHHHHH
Q 021707          220 -----ANAIFMKWVLATWTDDECKLIM  241 (309)
Q Consensus       220 -----~D~i~~~~vlh~~~d~~~~~iL  241 (309)
                           .+.+++++.-++.+.+-..++|
T Consensus        85 ~~~~~~~~~vvsNlPY~i~~~il~~ll  111 (252)
T 1qyr_A           85 AEKMGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             HHHHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             hcccCCceEEEECCCCCccHHHHHHHH
Confidence                 2345555555555444333333

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.99  E-value=3.8e-06  Score=84.31  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=73.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCC---CCC-Cceeeeh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNS---IPA-ANAIFMK  226 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~---~p~-~D~i~~~  226 (309)
                      ++.+|||+|||+|.++..+++... .+ ++++|+ +.+++.++++        ++++++.+|.++.   ... .|+|++.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~-V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RS-TTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            457999999999999999987543 35 999998 6677776542        4799999999874   223 4999974


Q ss_pred             hhh--------hcCC-hhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          227 WVL--------ATWT-DDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       227 ~vl--------h~~~-d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      -..        +.+. .....++++++.+.|+|||.|++....
T Consensus       617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            321        1111 135678999999999999999866544

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.96  E-value=5.4e-06  Score=81.97  Aligned_cols=126  Identities=13%  Similarity=0.030  Sum_probs=80.2

Q ss_pred             hhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-------------CCCceE
Q 021707          122 AYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-------------HFICEG  188 (309)
Q Consensus       122 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------------p~~~~~  188 (309)
                      .|+.+++++.....|.+++..       .+.+..++-.+...|+|||||+|-++...+++.             ...+ +
T Consensus       378 tYe~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k-V  449 (745)
T 3ua3_A          378 VYNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK-L  449 (745)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE-E
T ss_pred             HHHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE-E
Confidence            577788888888888888753       222222111235689999999999975433222             1235 8


Q ss_pred             EEeechh-HHhhCC-----C-CCCceEEeCCCCCC-C------CC-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcE
Q 021707          189 INFDLPE-VVGEAP-----S-IPGVTHIGGDMFNS-I------PA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGK  253 (309)
Q Consensus       189 ~~~D~p~-~~~~a~-----~-~~ri~~~~~d~~~~-~------p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~  253 (309)
                      +++|... .+...+     . .++|+++.+|+.+- .      |+ +|+|+.=+.=.....+-...+|..+.+-|+|||.
T Consensus       450 yAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi  529 (745)
T 3ua3_A          450 YIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTI  529 (745)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCE
T ss_pred             EEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcE
Confidence            9999843 222211     1 27899999999764 5      44 6999854332112333355678888899999996


Q ss_pred             EE
Q 021707          254 LI  255 (309)
Q Consensus       254 l~  255 (309)
                      ++
T Consensus       530 ~i  531 (745)
T 3ua3_A          530 SI  531 (745)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.95  E-value=4.9e-06  Score=73.30  Aligned_cols=65  Identities=12%  Similarity=0.169  Sum_probs=52.7

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS  216 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~  216 (309)
                      ...+++..+ .....+|||||||+|.++..++++.  .+ ++++|. +.+++.+++    .++++++.+|+.+.
T Consensus        18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~-V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DN-LALVEIDRDLVAFLQKKYNQQKNITIYQNDALQF   87 (255)
T ss_dssp             HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SE-EEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTC
T ss_pred             HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhC
Confidence            455666665 6667899999999999999999885  56 999998 677776654    37899999999874

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.88  E-value=1.2e-05  Score=72.57  Aligned_cols=77  Identities=19%  Similarity=0.185  Sum_probs=60.1

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC---C-
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS---I-  217 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~---~-  217 (309)
                      ...+++.+. .....+|||+|||+|.++..+++.+|+.+ ++++|. +.+++.++++     ++++++.+|+.+.   + 
T Consensus        15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~-VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~   92 (301)
T 1m6y_A           15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCR-IIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK   92 (301)
T ss_dssp             HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred             HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHH
Confidence            455666664 56678999999999999999999999888 999998 7777776542     6899999998642   1 


Q ss_pred             ----CCCceeeeh
Q 021707          218 ----PAANAIFMK  226 (309)
Q Consensus       218 ----p~~D~i~~~  226 (309)
                          ...|.|++.
T Consensus        93 ~~g~~~~D~Vl~D  105 (301)
T 1m6y_A           93 TLGIEKVDGILMD  105 (301)
T ss_dssp             HTTCSCEEEEEEE
T ss_pred             hcCCCCCCEEEEc
Confidence                224888763

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.82  E-value=3.2e-05  Score=77.64  Aligned_cols=109  Identities=11%  Similarity=-0.005  Sum_probs=75.7

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc------------------------------------------CCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH------------------------------------------HFI  185 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~------------------------------------------p~~  185 (309)
                      +..++.... |....+|+|.+||+|.++++.+...                                          ++.
T Consensus       179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~  257 (703)
T 3v97_A          179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS  257 (703)
T ss_dssp             HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence            344555554 8778899999999999999888652                                          346


Q ss_pred             ceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-CC----CCceeeehhhhhc-C-ChhHHHHHHHHHHHhc--
Q 021707          186 CEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-IP----AANAIFMKWVLAT-W-TDDECKLIMENCYKAL--  248 (309)
Q Consensus       186 ~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~p----~~D~i~~~~vlh~-~-~d~~~~~iL~~~~~aL--  248 (309)
                      + ++++|. +.+++.++.+       ++|++..+|+.+. .|    ..|+|+++--... + .+++...+.+.+.+.|  
T Consensus       258 ~-i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~  336 (703)
T 3v97_A          258 H-FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKN  336 (703)
T ss_dssp             C-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHH
T ss_pred             c-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHh
Confidence            7 999998 7788777653       4699999999764 23    2499988733221 1 2334455555555444  


Q ss_pred             -CCCcEEEEec
Q 021707          249 -LAGGKLIACE  258 (309)
Q Consensus       249 -~pgG~l~i~e  258 (309)
                       .|||+++|+-
T Consensus       337 ~~~g~~~~ilt  347 (703)
T 3v97_A          337 QFGGWNLSLFS  347 (703)
T ss_dssp             HCTTCEEEEEE
T ss_pred             hCCCCeEEEEe
Confidence             5899999884

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.79  E-value=4.6e-05  Score=70.79  Aligned_cols=103  Identities=13%  Similarity=0.130  Sum_probs=70.3

Q ss_pred             cceEEEecCCccHHHHHHHHh-----------------cCCCceEEEeech------------hHHhhC----CCCCCce
Q 021707          161 VKRLVDVGGSAGDCLRMILQK-----------------HHFICEGINFDLP------------EVVGEA----PSIPGVT  207 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~-----------------~p~~~~~~~~D~p------------~~~~~a----~~~~ri~  207 (309)
                      .-+|+|+||++|..+..++..                 .|+++ ++.-|+|            ...+..    ....+-.
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~-v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~  131 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQ-IFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSC  131 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEE-EEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceE-EEecCCCccchHHHHhhhhhhHhhhhhhccCCCCce
Confidence            678999999999998887776                 47778 8999986            111111    1112223


Q ss_pred             E---EeCCCCCC-CCCC--ceeeehhhhhcCChh-------------------------HHH------------HHHHHH
Q 021707          208 H---IGGDMFNS-IPAA--NAIFMKWVLATWTDD-------------------------ECK------------LIMENC  244 (309)
Q Consensus       208 ~---~~~d~~~~-~p~~--D~i~~~~vlh~~~d~-------------------------~~~------------~iL~~~  244 (309)
                      |   ++|.|+.. +|..  |+++.+.+||-.++.                         .+.            .+|+..
T Consensus       132 f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R  211 (384)
T 2efj_A          132 LIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH  211 (384)
T ss_dssp             EEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   45677765 7763  999999999964421                         122            238888


Q ss_pred             HHhcCCCcEEEEeccccCCC
Q 021707          245 YKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       245 ~~aL~pgG~l~i~e~~~~~~  264 (309)
                      ++.|+|||++++.=.-.+..
T Consensus       212 a~eL~pGG~mvl~~~gr~~~  231 (384)
T 2efj_A          212 SEELISRGRMLLTFICKEDE  231 (384)
T ss_dssp             HHHEEEEEEEEEEEECCCTT
T ss_pred             HHHhccCCeEEEEEecCCCc
Confidence            99999999999886655543

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.77  E-value=2.8e-05  Score=68.52  Aligned_cols=99  Identities=8%  Similarity=0.115  Sum_probs=66.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-h-------hHHhhCCCC-------CCceEEeCCCCCC---CC-
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-P-------EVVGEAPSI-------PGVTHIGGDMFNS---IP-  218 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p-------~~~~~a~~~-------~ri~~~~~d~~~~---~p-  218 (309)
                      .....+|||+|||+|.++..+++.  ..+ ++++|. |       .+++.++++       .|++++.+|..+.   ++ 
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~-V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~  157 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLT-VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK  157 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCC-EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCE-EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhc
Confidence            344579999999999999999986  467 999998 6       666666543       5699999998763   32 


Q ss_pred             --C-CceeeehhhhhcCC------------------hhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          219 --A-ANAIFMKWVLATWT------------------DDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       219 --~-~D~i~~~~vlh~~~------------------d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                        . .|+|++.-..++-.                  +.+...+++.+.+..+  .+++|..+..
T Consensus       158 ~~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~  219 (258)
T 2r6z_A          158 TQGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL  219 (258)
T ss_dssp             HHCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred             cCCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence              3 59999854333211                  1234556666666653  3666665544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=97.75  E-value=5.5e-06  Score=76.81  Aligned_cols=88  Identities=11%  Similarity=0.007  Sum_probs=62.6

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCC---C------------
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSI---P------------  218 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~---p------------  218 (309)
                      ..+|+|+|||+|.++..+++..  .+ ++++|. +.+++.++++      ++++++.+|..+..   +            
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~--~~-V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~  290 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF--DR-VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGID  290 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS--SE-EEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSC
T ss_pred             CCEEEEccCCCCHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccc
Confidence            3679999999999999988754  35 999998 6777776542      68999999986531   1            


Q ss_pred             ----CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          219 ----AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       219 ----~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                          ..|+|++.-     |..   .+.+++.+.|+|+|+++.+..
T Consensus       291 ~~~~~fD~Vv~dP-----Pr~---g~~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          291 LKSYQCETIFVDP-----PRS---GLDSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             GGGCCEEEEEECC-----CTT---CCCHHHHHHHTTSSEEEEEES
T ss_pred             cccCCCCEEEECc-----Ccc---ccHHHHHHHHhCCCEEEEEEC
Confidence                248887632     211   234455666778899888754

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.71  E-value=6.9e-05  Score=68.48  Aligned_cols=103  Identities=15%  Similarity=0.184  Sum_probs=85.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC---------------------------CCCceEEeCC
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS---------------------------IPGVTHIGGD  212 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~---------------------------~~ri~~~~~d  212 (309)
                      +...||.+|||.......+...+|+++ ++-+|+|.+++..++                           .+++++++.|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~-~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLA-YVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEE-EEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCE-EEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            457899999999999999999888888 899999988765432                           1689999999


Q ss_pred             CCCC-C--------C--CC-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          213 MFNS-I--------P--AA-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       213 ~~~~-~--------p--~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +.+. +        +  .. .++++-.+|++++++++.++|+.+.+.. |+|.+++.|.+.+.+
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~  238 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQ  238 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCS
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCC
Confidence            9873 2        1  22 5777889999999999999999999987 788899999988743

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.69  E-value=7.5e-05  Score=68.79  Aligned_cols=105  Identities=15%  Similarity=0.265  Sum_probs=71.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHh----------------cCCCceEEEeechh-----HHhhCCC---CCC---ceEEeC
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQK----------------HHFICEGINFDLPE-----VVGEAPS---IPG---VTHIGG  211 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~----------------~p~~~~~~~~D~p~-----~~~~a~~---~~r---i~~~~~  211 (309)
                      ++.-+|+|+||++|..+..+...                .|..+ ++.-|+|.     +......   ..+   +.-++|
T Consensus        50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~-v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpg  128 (359)
T 1m6e_X           50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQ-IFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG  128 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEE-EEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES
T ss_pred             CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceE-EEecCCCchHHHHHHHhcchhcccCCCEEEEecch
Confidence            44578999999999766544433                46677 89999852     2222221   112   344567


Q ss_pred             CCCCC-CCCC--ceeeehhhhhcCCh-------------------------------hHHHHHHHHHHHhcCCCcEEEEe
Q 021707          212 DMFNS-IPAA--NAIFMKWVLATWTD-------------------------------DECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       212 d~~~~-~p~~--D~i~~~~vlh~~~d-------------------------------~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .|+.. +|..  |+++.++.||-.++                               .|-..+|+..++.|+|||++++.
T Consensus       129 SFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~  208 (359)
T 1m6e_X          129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             hhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            88765 7763  99999999996442                               13345699999999999999887


Q ss_pred             ccccCCC
Q 021707          258 EPVLLDD  264 (309)
Q Consensus       258 e~~~~~~  264 (309)
                      =.-.+..
T Consensus       209 ~~gr~~~  215 (359)
T 1m6e_X          209 ILGRRSE  215 (359)
T ss_dssp             EEECSSS
T ss_pred             EecCCCC
Confidence            6655543

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.68  E-value=7.8e-05  Score=65.72  Aligned_cols=102  Identities=12%  Similarity=0.111  Sum_probs=62.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhh-CCCC----CCceEEeCCCC-CCCCC--Cceeeehhhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGE-APSI----PGVTHIGGDMF-NSIPA--ANAIFMKWVL  229 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~-a~~~----~ri~~~~~d~~-~~~p~--~D~i~~~~vl  229 (309)
                      +....+|||+|||.|.++..+++..+-.. ++++|+-.-+.. ....    .++.....++. ..++.  +|+|++....
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~-v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD~ap  150 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSG-VKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDTLLCDIGE  150 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCc-ceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccEEEecCcc
Confidence            56677999999999999998887765444 555665211111 1111    14444444431 12332  4999986654


Q ss_pred             h---cCChh-HHHHHHHHHHHhcCCC-cEEEEecccc
Q 021707          230 A---TWTDD-ECKLIMENCYKALLAG-GKLIACEPVL  261 (309)
Q Consensus       230 h---~~~d~-~~~~iL~~~~~aL~pg-G~l~i~e~~~  261 (309)
                      +   .+-|. ....+|+-+.+.|+|| |.+++ ..+.
T Consensus       151 nsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~-KVf~  186 (277)
T 3evf_A          151 SSSSSVTEGERTVRVLDTVEKWLACGVDNFCV-KVLA  186 (277)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-EESC
T ss_pred             CcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-EecC
Confidence            4   12222 3345789999999999 98887 4444

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=97.66  E-value=3.6e-05  Score=71.59  Aligned_cols=91  Identities=9%  Similarity=-0.118  Sum_probs=68.7

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---------------------CCceEEeCCCCCC--
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---------------------PGVTHIGGDMFNS--  216 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---------------------~ri~~~~~d~~~~--  216 (309)
                      ..+|||+|||+|..++.++++.+..+ ++++|. +..++.++++                     .+++++.+|..+.  
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~-V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEE-VWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSE-EEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            56899999999999999999988888 999998 5565554431                     2388999998654  


Q ss_pred             -CCC-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          217 -IPA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       217 -~p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                       .+. .|+|++.-    +..  ...+|..+.+.|+|||.+++.-
T Consensus       127 ~~~~~fD~I~lDP----~~~--~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDP----FGS--PMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECC----SSC--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeCC----CCC--HHHHHHHHHHhcCCCCEEEEEe
Confidence             233 59988531    111  2478999999999999887763

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=97.62  E-value=0.00012  Score=66.25  Aligned_cols=104  Identities=9%  Similarity=0.011  Sum_probs=68.2

Q ss_pred             hhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCC------
Q 021707          153 DSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIP------  218 (309)
Q Consensus       153 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p------  218 (309)
                      ..++ ...+.+|||+|||+|..+..+++.. +..+ ++++|. +..++.++++      .+++++.+|+.+..+      
T Consensus        96 ~~l~-~~~g~~VLDlcaG~G~kt~~la~~~~~~g~-V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~  173 (309)
T 2b9e_A           96 MLLD-PPPGSHVIDACAAPGNKTSHLAALLKNQGK-IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYH  173 (309)
T ss_dssp             HHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGT
T ss_pred             HHhC-CCCCCEEEEeCCChhHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccC
Confidence            3443 5566799999999999999999986 4567 999998 6666655432      679999999865421      


Q ss_pred             CCceeeeh------hhhhc---------CChhH-------HHHHHHHHHHhcCCCcEEEEecc
Q 021707          219 AANAIFMK------WVLAT---------WTDDE-------CKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       219 ~~D~i~~~------~vlh~---------~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ..|.|++-      .++..         |+.++       ..++|+++.+.++ ||+|+....
T Consensus       174 ~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC  235 (309)
T 2b9e_A          174 EVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC  235 (309)
T ss_dssp             TEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred             CCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence            24888861      12211         12111       2357888777776 887766543

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.56  E-value=1.7e-05  Score=74.06  Aligned_cols=93  Identities=10%  Similarity=-0.005  Sum_probs=69.5

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CC-ceEEeCCCCCCC----CC-Cceeee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PG-VTHIGGDMFNSI----PA-ANAIFM  225 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~r-i~~~~~d~~~~~----p~-~D~i~~  225 (309)
                      .+.+|||++||+|.+++.++++.++...++++|. +..++.++++       ++ ++++.+|.++..    +. .|+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4579999999999999999998766333999998 6667666542       34 999999986432    23 499987


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      --    +..  ...++..+.+.|+|||.|++.-
T Consensus       132 DP----~g~--~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          132 DP----FGT--PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CC----SSC--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC----CcC--HHHHHHHHHHHhCCCCEEEEEe
Confidence            54    111  1358899999999999887765

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.51  E-value=7e-05  Score=72.89  Aligned_cols=110  Identities=15%  Similarity=0.163  Sum_probs=75.2

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC------------------CCceEEEeec-hhHHhhCCC------
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH------------------FICEGINFDL-PEVVGEAPS------  202 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p------------------~~~~~~~~D~-p~~~~~a~~------  202 (309)
                      +..+++.++ .....+|+|.+||+|.++..+.+...                  ..+ ++++|+ +.+++.++.      
T Consensus       158 v~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~-i~GiEid~~~~~lA~~nl~l~g  235 (541)
T 2ar0_A          158 IKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA-FIGLELVPGTRRLALMNCLLHD  235 (541)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTS-EEEEESCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcce-EEEEcCCHHHHHHHHHHHHHhC
Confidence            334455554 44567999999999999998887532                  236 999998 556655542      


Q ss_pred             CCC-----ceEEeCCCCCC----CCCCceeeehhhhhcCC------------hhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          203 IPG-----VTHIGGDMFNS----IPAANAIFMKWVLATWT------------DDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       203 ~~r-----i~~~~~d~~~~----~p~~D~i~~~~vlh~~~------------d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ...     +.+..+|.+..    .+..|+|+++-.+....            .......++.+.+.|+|||++.++-+
T Consensus       236 i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          236 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence            132     78999999864    12359999864433211            11224789999999999999887743

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.31  E-value=0.00038  Score=55.53  Aligned_cols=85  Identities=18%  Similarity=0.087  Sum_probs=59.7

Q ss_pred             CCcceEEEecCCcc-HHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCC----CCceeeehhhhhcC
Q 021707          159 KGVKRLVDVGGSAG-DCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIP----AANAIFMKWVLATW  232 (309)
Q Consensus       159 ~~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p----~~D~i~~~~vlh~~  232 (309)
                      ....+|||||||.| ..+..|++. .+.. +++.|+ |..++         ++..|+|++..    .+|+|+..+     
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~-V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIYsir-----   97 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVD-LVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIYSIR-----   97 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHH-SCCE-EEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEEEES-----
T ss_pred             CCCCcEEEEccCCChHHHHHHHHh-CCCe-EEEEECCccccc---------eEEccCCCCcccccCCcCEEEEcC-----
Confidence            34579999999999 588777764 3677 999998 44333         89999999844    459998777     


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          233 TDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      |+.|...-+.++++...  .-++|.-..-
T Consensus        98 PP~El~~~i~~lA~~v~--adliI~pL~~  124 (153)
T 2k4m_A           98 PPAEIHSSLMRVADAVG--ARLIIKPLTG  124 (153)
T ss_dssp             CCTTTHHHHHHHHHHHT--CEEEEECBTT
T ss_pred             CCHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence            44555566666666654  5677664433

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.28  E-value=0.0001  Score=64.90  Aligned_cols=97  Identities=18%  Similarity=0.165  Sum_probs=63.3

Q ss_pred             CcceEEEecCCccHHHHHHHHh-------cCC-----CceEEEeec-h---hHHhh-----------CC-----------
Q 021707          160 GVKRLVDVGGSAGDCLRMILQK-------HHF-----ICEGINFDL-P---EVVGE-----------AP-----------  201 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~-------~p~-----~~~~~~~D~-p---~~~~~-----------a~-----------  201 (309)
                      +..+|||||+|+|..+..+++.       +|+     ++ ++.+|. |   +.+..           ++           
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~-~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLH-FISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEE-EEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeE-EEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            4579999999999999887765       674     46 899986 3   22221           11           


Q ss_pred             ---------CCCCceEEeCCCCCC---CC-----CCceeeeh-hhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          202 ---------SIPGVTHIGGDMFNS---IP-----AANAIFMK-WVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       202 ---------~~~ri~~~~~d~~~~---~p-----~~D~i~~~-~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                               ...+++++.||..+.   .+     ..|+|++- +.-..-|+--..++|+.+++.|+|||+|+..
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~ty  212 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF  212 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEES
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEEE
Confidence                     114577889998653   32     24888873 2211111100247899999999999998863

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.26  E-value=0.00097  Score=61.37  Aligned_cols=99  Identities=12%  Similarity=0.087  Sum_probs=71.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCCC---CceeeehhhhhcCCh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPA---ANAIFMKWVLATWTD  234 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p~---~D~i~~~~vlh~~~d  234 (309)
                      +..+.++||+||+.|.++..++++  +.+ ++++|.-.+-......++|+++.+|.++..|.   .|+|++-.+.   +.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~-V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p  282 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMW-VYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KP  282 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCE-EEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CH
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCE-EEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC---Ch
Confidence            346789999999999999999988  567 99999854444444568999999999987443   3888876554   34


Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          235 DECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       235 ~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      .....++.+.......++.++.+...+.
T Consensus       283 ~~~~~l~~~wl~~~~~~~aI~~lKL~mk  310 (375)
T 4auk_A          283 AKVAALMAQWLVNGWCRETIFNLKLPMK  310 (375)
T ss_dssp             HHHHHHHHHHHHTTSCSEEEEEEECCSS
T ss_pred             HHhHHHHHHHHhccccceEEEEEEeccc
Confidence            4555666665555555566666665443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.20  E-value=0.00076  Score=67.85  Aligned_cols=101  Identities=14%  Similarity=0.041  Sum_probs=66.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCC---CceEEEeec-hhHHhhC--C----C------CCCceEEeCCCCCCC----
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHF---ICEGINFDL-PEVVGEA--P----S------IPGVTHIGGDMFNSI----  217 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~---~~~~~~~D~-p~~~~~a--~----~------~~ri~~~~~d~~~~~----  217 (309)
                      +....+|+|.|||+|.++.++++..+.   .+ ++++|+ +.+++.+  +    .      .+...+...|++.+.    
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~-IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~  397 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQ-IWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDF  397 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGG-EEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGG
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCe-EEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccccc
Confidence            345679999999999999999998863   46 899998 5555444  1    1      123456666776531    


Q ss_pred             CCCceeeehhhhh-cCC-hh-------------------------HHHHHHHHHHHhcCCCcEEEEecc
Q 021707          218 PAANAIFMKWVLA-TWT-DD-------------------------ECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       218 p~~D~i~~~~vlh-~~~-d~-------------------------~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ...|+|+++--.- .+. +.                         -...+++.+.+.|+|||++.++=+
T Consensus       398 ~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP  466 (878)
T 3s1s_A          398 ANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP  466 (878)
T ss_dssp             TTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence            2249998753321 111 11                         123478889999999999887643

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.18  E-value=0.00027  Score=62.35  Aligned_cols=106  Identities=11%  Similarity=0.022  Sum_probs=65.6

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechh-HHhhCCC----CCC-ceEEeC-CCCCCCCC-C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPE-VVGEAPS----IPG-VTHIGG-DMFNSIPA-A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~-~~~~a~~----~~r-i~~~~~-d~~~~~p~-~  220 (309)
                      ..+.+.+ .+....+|||+|||.|.++..+++..+-.. ++++|+-. ....+..    ..+ +.+.+. |+....+. +
T Consensus        80 ~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~s-V~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~  157 (282)
T 3gcz_A           80 RWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKK-VMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG  157 (282)
T ss_dssp             HHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred             HHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCe-eeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence            3455555 366778999999999999999888776556 78888721 1111111    122 333333 44332233 5


Q ss_pred             ceeeehhhhh----cCChhHHHHHHHHHHHhcCCC--cEEEE
Q 021707          221 NAIFMKWVLA----TWTDDECKLIMENCYKALLAG--GKLIA  256 (309)
Q Consensus       221 D~i~~~~vlh----~~~d~~~~~iL~~~~~aL~pg--G~l~i  256 (309)
                      |+|++-...+    .........+|.-+.+.|+||  |.+++
T Consensus       158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~  199 (282)
T 3gcz_A          158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI  199 (282)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE
Confidence            9999755544    111223345788889999999  98776

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.08  E-value=0.00022  Score=65.86  Aligned_cols=96  Identities=15%  Similarity=0.113  Sum_probs=68.1

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC--------------CCCceEEeCCCCCCC-------
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS--------------IPGVTHIGGDMFNSI-------  217 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~--------------~~ri~~~~~d~~~~~-------  217 (309)
                      .+.+||=||+|.|..+.++++. |..+ ++++|+ |.|++.+++              .+|++++.+|.++.+       
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh-~~~~-V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~  282 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKL-KPKM-VTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG  282 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTT-CCSE-EEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCcHHHHHHHHhc-CCce-eEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence            3579999999999999999975 5566 999999 777776543              157899999986532       


Q ss_pred             CCCceeeehhhhh-------cCCh-hHHHHHHHHHHHhcCCCcEEEEe
Q 021707          218 PAANAIFMKWVLA-------TWTD-DECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       218 p~~D~i~~~~vlh-------~~~d-~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ...|+|+.=-.-.       .... .=..+.++.++++|+|||.++..
T Consensus       283 ~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          283 REFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             CCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            1248888531100       0011 11357889999999999988764

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.03  E-value=0.00033  Score=61.61  Aligned_cols=78  Identities=12%  Similarity=0.139  Sum_probs=54.2

Q ss_pred             HHHhhcCCCCCc--ceEEEecCCccHHHHHHHHhcCCCceEEEeechh-H-------HhhCCC-------C-CCceEEeC
Q 021707          150 SVLDSYNGFKGV--KRLVDVGGSAGDCLRMILQKHHFICEGINFDLPE-V-------VGEAPS-------I-PGVTHIGG  211 (309)
Q Consensus       150 ~~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~-~-------~~~a~~-------~-~ri~~~~~  211 (309)
                      .+.+.+. ..+.  .+|||+|||+|..+..+++.  ..+ ++++|... +       ++.++.       . .|++++.+
T Consensus        77 ~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~-V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~  152 (258)
T 2oyr_A           77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (258)
T ss_dssp             HHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred             HHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEEC
Confidence            3445553 4455  79999999999999999998  457 99999843 2       332221       1 47999999


Q ss_pred             CCCCC---CCC-Cceeeehhhhhc
Q 021707          212 DMFNS---IPA-ANAIFMKWVLAT  231 (309)
Q Consensus       212 d~~~~---~p~-~D~i~~~~vlh~  231 (309)
                      |..+.   ++. .|+|++.-..+.
T Consensus       153 D~~~~L~~~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          153 SSLTALTDITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             CHHHHSTTCSSCCSEEEECCCCCC
T ss_pred             CHHHHHHhCcccCCEEEEcCCCCC
Confidence            98653   333 599998654443

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.01  E-value=0.00026  Score=68.85  Aligned_cols=108  Identities=14%  Similarity=0.051  Sum_probs=70.4

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC---------------CCceEEEeec-hhHHhhCCCC-------C
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH---------------FICEGINFDL-PEVVGEAPSI-------P  204 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p---------------~~~~~~~~D~-p~~~~~a~~~-------~  204 (309)
                      +..+++.+. . ...+|+|.+||+|.++.++.+..+               ..+ +.++|+ +.++..++.+       .
T Consensus       234 v~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~~  310 (544)
T 3khk_A          234 VTLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQIS-VYGQESNPTTWKLAAMNMVIRGIDF  310 (544)
T ss_dssp             HHHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEE-EEECCCCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhce-EEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            344455553 2 234999999999999998865432               456 899998 5566555431       3


Q ss_pred             CceEEeCCCCCC--CCC--Cceeeehhhhh--cCChh-------------------------HHHHHHHHHHHhcCCCcE
Q 021707          205 GVTHIGGDMFNS--IPA--ANAIFMKWVLA--TWTDD-------------------------ECKLIMENCYKALLAGGK  253 (309)
Q Consensus       205 ri~~~~~d~~~~--~p~--~D~i~~~~vlh--~~~d~-------------------------~~~~iL~~~~~aL~pgG~  253 (309)
                      ++.+..+|.+..  .+.  .|+|+++--..  .|..+                         .....++.+.+.|+|||+
T Consensus       311 ~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr  390 (544)
T 3khk_A          311 NFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGS  390 (544)
T ss_dssp             BCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEE
T ss_pred             ccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCce
Confidence            455588898764  222  49999853322  23211                         112588999999999999


Q ss_pred             EEEec
Q 021707          254 LIACE  258 (309)
Q Consensus       254 l~i~e  258 (309)
                      +.++=
T Consensus       391 ~aiVl  395 (544)
T 3khk_A          391 MALLL  395 (544)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            87663

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.00  E-value=0.0019  Score=57.36  Aligned_cols=99  Identities=10%  Similarity=0.055  Sum_probs=62.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHH-hhCC--C--C-CCceEEeC-CCCCCCCC-Cceeeehhhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVV-GEAP--S--I-PGVTHIGG-DMFNSIPA-ANAIFMKWVL  229 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~-~~a~--~--~-~ri~~~~~-d~~~~~p~-~D~i~~~~vl  229 (309)
                      +.+..+|||+||+.|.++..+++..+-.. ++++|+.... ....  +  . +-+.+.++ |++...+. .|+|++-...
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~s-V~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~AP  157 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMS-VKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGE  157 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCce-eeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcC
Confidence            56678999999999999999998765555 7788873211 1110  0  1 22334433 55443333 4999875443


Q ss_pred             h----cCChhHHHHHHHHHHHhcCCC-cEEEEe
Q 021707          230 A----TWTDDECKLIMENCYKALLAG-GKLIAC  257 (309)
Q Consensus       230 h----~~~d~~~~~iL~~~~~aL~pg-G~l~i~  257 (309)
                      +    .........+|.-+.+.|+|| |.+++-
T Consensus       158 nsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          158 SSSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            3    111112356788889999999 988774

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=96.96  E-value=0.0004  Score=49.50  Aligned_cols=64  Identities=13%  Similarity=0.109  Sum_probs=52.8

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcc-hHHHHHHHHHcCCceeeecccccCceEEcChhchh
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAE-NLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS   73 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~-~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~   73 (309)
                      .....-+...+...||.|+.+||+.+    |++.. .+++.|..|...|+|...+.+  .-.|++|+.+..
T Consensus        10 ~~~~~~IL~~Lk~~g~~ta~eiA~~L----git~~~aVr~hL~~Le~eGlV~~~~~g--RP~w~LT~~g~~   74 (79)
T 1xmk_A           10 AEIKEKICDYLFNVSDSSALNLAKNI----GLTKARDINAVLIDMERQGDVYRQGTT--PPIWHLTDKKRE   74 (79)
T ss_dssp             HHHHHHHHHHHHHTCCEEHHHHHHHH----CGGGHHHHHHHHHHHHHTTSEEEECSS--SCEEEECHHHHT
T ss_pred             hhHHHHHHHHHHHcCCcCHHHHHHHc----CCCcHHHHHHHHHHHHHCCCEEecCCC--CCCeEeCHhHHh
Confidence            34455667777788999999999999    99998 999999999999999876533  238999998753

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=96.91  E-value=0.00029  Score=66.03  Aligned_cols=63  Identities=22%  Similarity=0.312  Sum_probs=50.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCCCC-----CCceeee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNSIP-----AANAIFM  225 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~~p-----~~D~i~~  225 (309)
                      .+.+|||+|||+|..+..+++..  .+ ++++|. +.+++.++.+        ++++++.+|+++.++     ..|+|++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g--~~-V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKA--SQ-GIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTC--SE-EEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcC--CE-EEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence            35799999999999999998874  56 999998 6677766532        579999999987422     2599997

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=96.83  E-value=0.0016  Score=63.35  Aligned_cols=98  Identities=14%  Similarity=0.096  Sum_probs=68.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcC---CCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCC-CC---C--Cc
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHH---FICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNS-IP---A--AN  221 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~-~p---~--~D  221 (309)
                      ...+|+|.+||+|.++..+.+...   ..+ +.++|+ +.+...++.+        +++.+..+|.+.. +|   .  .|
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD  299 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVV-YFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD  299 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCce-EEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence            457999999999999999988853   556 999998 5555555421        4678999999875 23   2  49


Q ss_pred             eeeehhhh-hcCC------------------hh--HHHHHHHHHHHhcC-CCcEEEEec
Q 021707          222 AIFMKWVL-ATWT------------------DD--ECKLIMENCYKALL-AGGKLIACE  258 (309)
Q Consensus       222 ~i~~~~vl-h~~~------------------d~--~~~~iL~~~~~aL~-pgG~l~i~e  258 (309)
                      +|+++--. ..|.                  ..  .....++.+.+.|+ |||++.++=
T Consensus       300 ~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~Vl  358 (542)
T 3lkd_A          300 GVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVL  358 (542)
T ss_dssp             EEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEE
T ss_pred             EEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEe
Confidence            99975221 1121                  00  01247999999999 999986653

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=96.72  E-value=0.0018  Score=57.37  Aligned_cols=65  Identities=26%  Similarity=0.311  Sum_probs=52.4

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC--CCCceEEeCCCCC
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS--IPGVTHIGGDMFN  215 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~--~~ri~~~~~d~~~  215 (309)
                      ..+.+++.+. ......+||++||.|.++..++++  +.+ ++++|. |.+++.+++  .+|++++.+|+.+
T Consensus        10 Ll~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~-VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~   77 (285)
T 1wg8_A           10 LYQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGR-VIGLDQDPEAVARAKGLHLPGLTVVQGNFRH   77 (285)
T ss_dssp             THHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred             HHHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCE-EEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence            3567778875 777789999999999999999998  677 999998 666655432  2689999999865

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.67  E-value=0.0033  Score=56.68  Aligned_cols=101  Identities=13%  Similarity=0.106  Sum_probs=76.3

Q ss_pred             CcceEEEecCCccHHHHHHHHhcC-CCceEEEeechhHHhhCC---------CCCCceEEeCCCCCCCC----------C
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDLPEVVGEAP---------SIPGVTHIGGDMFNSIP----------A  219 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~p~~~~~a~---------~~~ri~~~~~d~~~~~p----------~  219 (309)
                      +...||++|||-=..+..+.  .| +++ ++-+|.|.+++..+         ..++.++++.|+.+.+.          .
T Consensus       102 g~~QvV~LGaGlDTra~Rl~--~~~~~~-v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLD--WPTGTT-VYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSC--CCTTCE-EEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCCCCCchhhhcc--CCCCcE-EEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            34679999999888877665  24 467 89999998887643         24789999999986411          1


Q ss_pred             C-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 A-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      . =++++-.++|+++++++.++|+.+.+.+.||+.|+ .|.+.++.
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~-~d~~~~~~  223 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIA-VETSPLHG  223 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEE-EECCCTTC
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEE-EEecCCCC
Confidence            1 35777899999999999999999999988888655 45555443

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=96.61  E-value=0.0013  Score=45.22  Aligned_cols=52  Identities=15%  Similarity=0.135  Sum_probs=42.9

Q ss_pred             hhhhhhcCC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707            9 GRKKVRLAN-TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT   68 (309)
Q Consensus         9 g~~~~~l~~-~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t   68 (309)
                      -+.+.+-.+ .|+|..|||+.+    |++...+.+.|..|...|+|....    .++|+++
T Consensus        14 ~IL~~L~~~~~~~s~~eLA~~l----glsr~tv~~~l~~L~~~G~I~~~~----~G~y~lg   66 (67)
T 2heo_A           14 KILQVLSDDGGPVAIFQLVKKC----QVPKKTLNQVLYRLKKEDRVSSPS----PKYWSIG   66 (67)
T ss_dssp             HHHHHHHHHCSCEEHHHHHHHH----CSCHHHHHHHHHHHHHTTSEEEEE----TTEEEEC
T ss_pred             HHHHHHHHcCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCcEecCC----CceEeeC
Confidence            345544333 689999999999    999999999999999999997764    6788865

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=96.35  E-value=0.0042  Score=45.57  Aligned_cols=54  Identities=15%  Similarity=0.195  Sum_probs=46.5

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhch
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGK   72 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~   72 (309)
                      ..+++.+  +++.|..|||+.+    |++...+.+.|+.|...|++....     +.|++++.+.
T Consensus        34 ~~Il~~L--~~~~~~~eLa~~l----~is~~tv~~~L~~L~~~Glv~~~~-----g~y~l~~~g~   87 (96)
T 1y0u_A           34 RKILRML--DKGRSEEEIMQTL----SLSKKQLDYHLKVLEAGFCIERVG-----ERWVVTDAGK   87 (96)
T ss_dssp             HHHHHHH--HTTCCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEET-----TEEEECTTTC
T ss_pred             HHHHHHH--cCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEC-----CEEEECCCch
Confidence            3455555  7889999999999    999999999999999999999873     5899998764

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=96.27  E-value=0.017  Score=48.61  Aligned_cols=92  Identities=4%  Similarity=-0.135  Sum_probs=58.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC---------CCCceEEeCCCCCC-------------
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS---------IPGVTHIGGDMFNS-------------  216 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~---------~~ri~~~~~d~~~~-------------  216 (309)
                      +..+||+||+|  ..++.+++ .++.+ ++.+|. ++..+.+++         .++|+++.+|..+-             
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~-~~~g~-VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~  105 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAE-LPGKH-VTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR  105 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHT-STTCE-EEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred             CCCEEEEECch--HHHHHHHH-cCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence            45799999985  55555555 45677 999997 444444332         45899999996431             


Q ss_pred             -----------CC--C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          217 -----------IP--A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       217 -----------~p--~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                                 .+  . .|+|++---       .....+..+.+.|+|||.| |.|.+...
T Consensus       106 ~l~~~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~I-v~DNv~~r  158 (202)
T 3cvo_A          106 SYPDYPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTL-LFDDYSQR  158 (202)
T ss_dssp             GTTHHHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEE-EETTGGGC
T ss_pred             hHHHHhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEE-EEeCCcCC
Confidence                       11  2 388886431       1124455567889999977 55554443

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=96.26  E-value=0.025  Score=51.39  Aligned_cols=103  Identities=15%  Similarity=0.174  Sum_probs=79.9

Q ss_pred             CcceEEEecCCccHHHHHHHHh-cCCCceEEEeechhHHhhCC-----------------------------CCCCceEE
Q 021707          160 GVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDLPEVVGEAP-----------------------------SIPGVTHI  209 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~p~~~~~a~-----------------------------~~~ri~~~  209 (309)
                      +...||-+|||.=.....+... .++++ .+=+|+|++++..+                             ..++.+++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~-~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v  168 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSK-YFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI  168 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSE-EEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCe-EEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence            3568999999999999999875 35777 89999998876432                             13688999


Q ss_pred             eCCCCCC--C---------C-CC-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          210 GGDMFNS--I---------P-AA-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       210 ~~d~~~~--~---------p-~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +.|+.+.  +         + .. =+++.=.+|.+++++++.++|+.+.+... +|.+++.|.+.+.+
T Consensus       169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d  235 (334)
T 3iei_A          169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGD  235 (334)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTS
T ss_pred             ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCC
Confidence            9999762  1         1 12 35666789999999999999999998864 56777889986654

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.18  E-value=0.01  Score=51.03  Aligned_cols=112  Identities=11%  Similarity=0.010  Sum_probs=70.5

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhC----CC--CCCceEEeC-CCCCCCCC-C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEA----PS--IPGVTHIGG-DMFNSIPA-A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a----~~--~~ri~~~~~-d~~~~~p~-~  220 (309)
                      ..+.+.+- +....+|||+||++|.++.-.+....-.+ +.++|+-..-.+-    +.  ...|+|+.+ |++...|. +
T Consensus        68 ~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~-V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~  145 (267)
T 3p8z_A           68 QWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTE-VRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC  145 (267)
T ss_dssp             HHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEE-EEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred             HHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCE-EEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence            44555663 66778999999999999997777664446 9999983221111    11  378999999 97654443 5


Q ss_pred             ceeeehhhhhc-CChhHH---HHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          221 NAIFMKWVLAT-WTDDEC---KLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       221 D~i~~~~vlh~-~~d~~~---~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      |++++--.=.. -+.-|.   .++|.-+.+.|++ |-+++ ..+.|..
T Consensus       146 DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~py~  191 (267)
T 3p8z_A          146 DTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNPYM  191 (267)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCCCS
T ss_pred             cEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccCCC
Confidence            98886432211 112233   3456666788888 66665 4555554

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.15  E-value=0.011  Score=51.39  Aligned_cols=105  Identities=12%  Similarity=0.049  Sum_probs=61.4

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHh--cCCCc-eEEEeechhHHhhCCCC-CCc---eEEeC-CCCCCCCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK--HHFIC-EGINFDLPEVVGEAPSI-PGV---THIGG-DMFNSIPA-  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~--~p~~~-~~~~~D~p~~~~~a~~~-~ri---~~~~~-d~~~~~p~-  219 (309)
                      ..+.+.+ -+....+|||+||+.|.++.-.++.  -..++ ++++.|+ + +...... .++   ++..+ |+++..+. 
T Consensus        63 ~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~  139 (269)
T 2px2_A           63 RWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFYKPSEI  139 (269)
T ss_dssp             HHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred             HHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccCCCCCC
Confidence            3444554 3677899999999999999998876  21112 1344453 1 1111111 455   55557 99875443 


Q ss_pred             Cceeeehhhhh--cC-ChhH-HHHHHHHHHHhcCCCc-EEEE
Q 021707          220 ANAIFMKWVLA--TW-TDDE-CKLIMENCYKALLAGG-KLIA  256 (309)
Q Consensus       220 ~D~i~~~~vlh--~~-~d~~-~~~iL~~~~~aL~pgG-~l~i  256 (309)
                      +|+|++=..-.  ++ .|.. ...+|.=+.+.|+||| -+++
T Consensus       140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv  181 (269)
T 2px2_A          140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI  181 (269)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence            59998532211  11 1111 2235666678999999 6666

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=96.14  E-value=0.0051  Score=48.35  Aligned_cols=59  Identities=15%  Similarity=0.082  Sum_probs=49.5

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +..++-.+++.|..+||+.+    ++++..+.+.++.|...|+|.+..    ...|.+|+.+..+..
T Consensus        13 i~~l~~~~~~~~~~ela~~l----~vs~~tvs~~l~~Le~~Glv~r~~----~~~~~LT~~g~~~~~   71 (142)
T 1on2_A           13 IYMLIEEKGYARVSDIAEAL----AVHPSSVTKMVQKLDKDEYLIYEK----YRGLVLTSKGKKIGK   71 (142)
T ss_dssp             HHHHHHHHSSCCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHHHHH
T ss_pred             HHHHHhhcCCCCHHHHHHHh----CCCHHHHHHHHHHHHHCCCEEEee----CceEEEchhHHHHHH
Confidence            33333345789999999999    999999999999999999999885    578999998866553

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=96.07  E-value=0.0047  Score=46.94  Aligned_cols=65  Identities=12%  Similarity=0.061  Sum_probs=53.2

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcC
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~   77 (309)
                      ...+++++..++++|+.+||+.+ .. ++++..+.+-|+.|...|+|+..+    .+.|++|+.+..++.+
T Consensus        15 d~~IL~~L~~~g~~s~~eLA~~l-~~-giS~~aVs~rL~~Le~~GLV~~~~----rg~Y~LT~~G~~~l~~   79 (111)
T 3b73_A           15 DDRILEIIHEEGNGSPKELEDRD-EI-RISKSSVSRRLKKLADHDLLQPLA----NGVYVITEEGEAYLNG   79 (111)
T ss_dssp             HHHHHHHHHHHSCBCHHHHHTST-TC-CSCHHHHHHHHHHHHHTTSEEECS----TTCEEECHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHH-hc-CCCHHHHHHHHHHHHHCCCEEecC----CceEEECchHHHHHHH
Confidence            34566666567999999999988 11 468899999999999999999875    5699999999877765

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=95.98  E-value=0.01  Score=43.66  Aligned_cols=51  Identities=14%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      .++ ++..+||..+    |++++.++..++.|...|++++..     +.|.+|+.|..+..
T Consensus        18 ~~~-~~~t~La~~~----~ls~~~~~~~l~~L~~~GLI~~~~-----~~~~LT~kG~~~l~   68 (95)
T 1r7j_A           18 KSG-SPKTRIMYGA----NLSYALTGRYIKMLMDLEIIRQEG-----KQYMLTKKGEELLE   68 (95)
T ss_dssp             TTC-BCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEET-----TEEEECHHHHHHHH
T ss_pred             HcC-CCHHHHHHHh----CcCHHHHHHHHHHHHHCCCeEEEC-----CeeEEChhHHHHHH
Confidence            345 9999999999    999999999999999999999984     67999999987765

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=95.88  E-value=0.0088  Score=42.70  Aligned_cols=60  Identities=8%  Similarity=0.061  Sum_probs=44.9

Q ss_pred             hhhhhhcCCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhh
Q 021707            9 GRKKVRLANT---PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSL   74 (309)
Q Consensus         9 g~~~~~l~~~---~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l   74 (309)
                      -+.+++..++   ++|+.|||+.+    |++...+.+.|.-|...|+|...+.  .++.|.+.+....+
T Consensus        14 ~IL~~L~~~~pg~~~t~~eLA~~L----gvsr~tV~~~L~~Le~~G~I~~~g~--~~~~W~i~~~~~~~   76 (81)
T 1qbj_A           14 RILKFLEELGEGKATTAHDLSGKL----GTPKKEINRVLYSLAKKGKLQKEAG--TPPLWKIAVSTQAW   76 (81)
T ss_dssp             HHHHHHHHHCTTCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEESS--SSCEEEEC------
T ss_pred             HHHHHHHHcCCCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEecCC--CCCeeEEeCcHHhc
Confidence            3445555555   89999999999    9999999999999999999987652  25789998766544

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=95.86  E-value=0.018  Score=52.24  Aligned_cols=67  Identities=18%  Similarity=0.204  Sum_probs=54.7

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC--CCCceEEeCCCCC
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS--IPGVTHIGGDMFN  215 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~--~~ri~~~~~d~~~  215 (309)
                      ....+++.+. ...+..+||..+|.|.++.+++++. |+.+ ++++|. |.+++.+++  .+|++++.+++.+
T Consensus        45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~Gr-Vig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~  115 (347)
T 3tka_A           45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGR-LLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA  115 (347)
T ss_dssp             TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred             cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            3567888885 6777899999999999999999985 7888 999999 777777643  2789999888754

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=95.75  E-value=0.0077  Score=45.32  Aligned_cols=59  Identities=14%  Similarity=0.012  Sum_probs=46.5

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhch
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGK   72 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~   72 (309)
                      ..++..+ .+++.|..|||+.+    |+++..+.+.|+.|...|+|.....+ ....|++|+.+.
T Consensus        24 ~~IL~~L-~~~~~~~~ela~~l----~is~~tv~~~l~~L~~~gli~~~~~g-r~~~y~l~~~~~   82 (114)
T 2oqg_A           24 WEILTEL-GRADQSASSLATRL----PVSRQAIAKHLNALQACGLVESVKVG-REIRYRALGAEL   82 (114)
T ss_dssp             HHHHHHH-HHSCBCHHHHHHHS----SSCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECSHHH
T ss_pred             HHHHHHH-HcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeeEEecC-CEEEEEechHHH
Confidence            4455544 67899999999999    99999999999999999999876511 023488887664

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=95.74  E-value=0.01  Score=42.32  Aligned_cols=60  Identities=10%  Similarity=-0.006  Sum_probs=47.6

Q ss_pred             hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707            5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus         5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      .....+.+++..++ +|+.|||+.+    |++...+++.|..|...|+|.....  .+-+|+++...
T Consensus        17 ~~~~~IL~lL~~~g-~sa~eLAk~L----giSk~aVr~~L~~Le~eG~I~~~~~--~PP~W~~~~~~   76 (82)
T 1oyi_A           17 EIVCEAIKTIGIEG-ATAAQLTRQL----NMEKREVNKALYDLQRSAMVYSSDD--IPPRWFMTTEA   76 (82)
T ss_dssp             HHHHHHHHHHSSST-EEHHHHHHHS----SSCHHHHHHHHHHHHHHTSSEECSS--SSCEEESCC--
T ss_pred             HHHHHHHHHHHHcC-CCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeCCC--CCCcceeccCc
Confidence            44556666666555 9999999999    9999999999999999999988752  24688888654

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=95.73  E-value=0.015  Score=51.53  Aligned_cols=95  Identities=17%  Similarity=0.090  Sum_probs=64.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhc-----CCCceEEEeec----hh-----------------------HHhhCCC-----
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKH-----HFICEGINFDL----PE-----------------------VVGEAPS-----  202 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~~D~----p~-----------------------~~~~a~~-----  202 (309)
                      .+..||++|+..|..++.+++..     |+-+ ++++|.    |+                       .++.+++     
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~k-I~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRT-VWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCC-EEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCE-EEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            45799999999999998887664     4777 999994    11                       0111211     


Q ss_pred             ---CCCceEEeCCCCCCCCC-----CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          203 ---IPGVTHIGGDMFNSIPA-----ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       203 ---~~ri~~~~~d~~~~~p~-----~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                         .++|+++.||+.+-+|.     .|++++=--   . -+.....|..++..|+|||.|++-|.
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~-y~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---L-YESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---S-HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---c-cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence               27899999998654332     266665431   1 12346789999999999996666665

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=95.72  E-value=0.012  Score=42.87  Aligned_cols=59  Identities=14%  Similarity=0.048  Sum_probs=45.5

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ..++..+..+++.|..|||+.+    |+++..+.+.|+.|...|++.....+ ....|++++.+
T Consensus        27 ~~il~~l~~~~~~s~~ela~~l----~is~~tvs~~l~~L~~~glv~~~~~~-r~~~y~l~~~~   85 (99)
T 3cuo_A           27 LLILCMLSGSPGTSAGELTRIT----GLSASATSQHLARMRDEGLIDSQRDA-QRILYSIKNEA   85 (99)
T ss_dssp             HHHHHHHTTCCSEEHHHHHHHH----CCCHHHHHHHHHHHHHTTSEEEEECS-SCEEEEECCHH
T ss_pred             HHHHHHHHhCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEecC-CEEEEEEChHH
Confidence            3445545455699999999999    99999999999999999999887521 12357777654

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=95.68  E-value=0.025  Score=50.12  Aligned_cols=110  Identities=14%  Similarity=0.106  Sum_probs=66.5

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhh----CCC--CCCceEEeC-CCCCCCCC-C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGE----APS--IPGVTHIGG-DMFNSIPA-A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~----a~~--~~ri~~~~~-d~~~~~p~-~  220 (309)
                      ..+.+.+. +....+|||+||++|.++.-++....-.+ +.++|+-..-..    .+.  ..-|.++.+ |++...|. .
T Consensus        84 ~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~-V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~  161 (321)
T 3lkz_A           84 RWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQE-VRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC  161 (321)
T ss_dssp             HHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEE-EEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCE-EEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence            33445553 66677999999999999997776654445 999998221111    011  144889988 87655433 5


Q ss_pred             ceeeehhhhhcCC--hhHH---HHHHHHHHHhcCCC-cEEEEeccccC
Q 021707          221 NAIFMKWVLATWT--DDEC---KLIMENCYKALLAG-GKLIACEPVLL  262 (309)
Q Consensus       221 D~i~~~~vlh~~~--d~~~---~~iL~~~~~aL~pg-G~l~i~e~~~~  262 (309)
                      |++++--. ---+  .-|.   .++|.-+-+.|++| |-+++ -.+.|
T Consensus       162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~-KVl~p  207 (321)
T 3lkz_A          162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV-KVLCP  207 (321)
T ss_dssp             SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE-EESCT
T ss_pred             CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE-EEcCC
Confidence            88886332 1111  1122   34566667888888 76666 34444

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=95.68  E-value=0.006  Score=43.12  Aligned_cols=55  Identities=9%  Similarity=0.073  Sum_probs=44.5

Q ss_pred             hhhhhhcCCC---CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707            9 GRKKVRLANT---PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus         9 g~~~~~l~~~---~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      .+.+++..++   ++|+.|||+.+    |++...+.+.|.-|...|++...+.  .++.|.+++
T Consensus        18 ~IL~~L~~~~~~~~~t~~eLA~~L----gvs~~tV~~~L~~L~~~G~I~~~g~--~~~~W~i~~   75 (77)
T 1qgp_A           18 RILKFLEELGEGKATTAHDLSGKL----GTPKKEINRVLYSLAKKGKLQKEAG--TPPLWKIAV   75 (77)
T ss_dssp             HHHHHHHHHCSSSCEEHHHHHHHH----CCCHHHHHHHHHHHHHHTSEEEECS--SSCEEEECC
T ss_pred             HHHHHHHHcCCCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEecCC--CCCceEecC
Confidence            3444444455   89999999999    9999999999999999999988752  257888775

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=95.61  E-value=0.021  Score=42.17  Aligned_cols=56  Identities=23%  Similarity=0.220  Sum_probs=44.4

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      +.++..+ .+++.|+.|||+.+    |+++..+.+-|+.|...|+|.....+. ...|++++
T Consensus        26 ~~Il~~L-~~~~~~~~ela~~l----~is~~tvs~~L~~L~~~Glv~~~~~g~-~~~y~l~~   81 (102)
T 3pqk_A           26 LMLVCTL-VEGEFSVGELEQQI----GIGQPTLSQQLGVLRESGIVETRRNIK-QIFYRLTE   81 (102)
T ss_dssp             HHHHHHH-HTCCBCHHHHHHHH----TCCTTHHHHHHHHHHHTTSEEEECSSS-CCEEEECS
T ss_pred             HHHHHHH-HhCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEEEeCC-EEEEEECc
Confidence            3344444 46899999999999    999999999999999999998775221 23688876

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=95.57  E-value=0.017  Score=42.33  Aligned_cols=57  Identities=19%  Similarity=0.141  Sum_probs=44.9

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      +.++..+ .+++.|+.|||+.+    |+++..+.+-|+.|...|+|.....+. .-.|++++.
T Consensus        26 ~~Il~~L-~~~~~~~~ela~~l----~is~~tvs~~L~~L~~~Glv~~~~~g~-~~~y~l~~~   82 (98)
T 3jth_A           26 LQILCML-HNQELSVGELCAKL----QLSQSALSQHLAWLRRDGLVTTRKEAQ-TVYYTLKSE   82 (98)
T ss_dssp             HHHHHHT-TTSCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEECCTT-CCEEEECCH
T ss_pred             HHHHHHH-hcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEEEeCC-EEEEEECHH
Confidence            3455544 45999999999999    999999999999999999998775221 235877764

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=95.54  E-value=0.022  Score=52.33  Aligned_cols=110  Identities=13%  Similarity=0.017  Sum_probs=72.5

Q ss_pred             hhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC------------CCCCceEEeCCCCCC---
Q 021707          153 DSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP------------SIPGVTHIGGDMFNS---  216 (309)
Q Consensus       153 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~------------~~~ri~~~~~d~~~~---  216 (309)
                      ..++ .+.+.+|||+.+|.|.=+..+++..++-+ ++..|. +.-+...+            ...++.+...|....   
T Consensus       142 ~~L~-~~pg~~VLD~CAaPGGKT~~la~~~~~~~-l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~  219 (359)
T 4fzv_A          142 LALG-LQPGDIVLDLCAAPGGKTLALLQTGCCRN-LAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL  219 (359)
T ss_dssp             HHHC-CCTTEEEEESSCTTCHHHHHHHHTTCEEE-EEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH
T ss_pred             HHhC-CCCCCEEEEecCCccHHHHHHHHhcCCCc-EEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh
Confidence            3444 56678999999999999999998877666 899997 22222211            125788888887553   


Q ss_pred             CCC-Cceeee----hh----hh-------hcCChhH-------HHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          217 IPA-ANAIFM----KW----VL-------ATWTDDE-------CKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       217 ~p~-~D~i~~----~~----vl-------h~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .+. +|.|++    +.    ++       +.|..++       -.+||+++.+.|+|||+|+-..-.+...
T Consensus       220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~  290 (359)
T 4fzv_A          220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL  290 (359)
T ss_dssp             STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT
T ss_pred             ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh
Confidence            333 488873    22    12       1222222       2579999999999999887555444443

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=95.42  E-value=0.011  Score=45.48  Aligned_cols=58  Identities=24%  Similarity=0.198  Sum_probs=44.6

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      +.++..+..+++.|+.|||+.+    |+++..+.+.|+.|...|++.....+. ...|++++.
T Consensus        45 l~IL~~L~~~~~~s~~eLa~~l----~is~stvs~~L~~L~~~Glv~~~~~gr-~~~y~l~~~  102 (122)
T 1u2w_A           45 AKITYALCQDEELCVCDIANIL----GVTIANASHHLRTLYKQGVVNFRKEGK-LALYSLGDE  102 (122)
T ss_dssp             HHHHHHHHHSSCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEC-----CCEEEESCH
T ss_pred             HHHHHHHHHCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEEEECC-EEEEEECHH
Confidence            3455555447899999999999    999999999999999999998765211 235888764

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=95.35  E-value=0.019  Score=40.66  Aligned_cols=56  Identities=11%  Similarity=-0.016  Sum_probs=42.7

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc-ccCceEEcCh
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF-RGERKYSLTE   69 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~-~~~~~y~~t~   69 (309)
                      +++.+..+++.|..|||+.+    |++...+.+.|..|...|++...... .....|.+++
T Consensus         5 Il~~L~~~~~~s~~eLa~~l----gvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~   61 (81)
T 2htj_A            5 ILEFLNRHNGGKTAEIAEAL----AVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKG   61 (81)
T ss_dssp             HHHHHHHSCCCCHHHHHHHH----TSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESS
T ss_pred             HHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEECh
Confidence            44555556899999999999    99999999999999999999854311 1123566654

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=95.33  E-value=0.03  Score=43.56  Aligned_cols=51  Identities=10%  Similarity=0.089  Sum_probs=45.3

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhh
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLV   75 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~   75 (309)
                      .+++.|..+||+.+    +++...+.+.++.|...|+|.+..     ..|.+|+.+..+.
T Consensus        28 ~~~~~s~~ela~~l----~is~~tv~~~l~~Le~~Gli~r~~-----~~~~Lt~~g~~~~   78 (139)
T 2x4h_A           28 SGEGAKINRIAKDL----KIAPSSVFEEVSHLEEKGLVKKKE-----DGVWITNNGTRSI   78 (139)
T ss_dssp             TTSCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEET-----TEEEECHHHHHHH
T ss_pred             cCCCcCHHHHHHHh----CCChHHHHHHHHHHHHCCCEEecC-----CeEEEChhHHHHH
Confidence            46799999999999    999999999999999999999873     5799999886554

>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48

Probab=95.29  E-value=0.014  Score=42.49  Aligned_cols=57  Identities=19%  Similarity=0.222  Sum_probs=45.7

Q ss_pred             CCC-CCCHHHHHHHhCcCCCCCcch-HHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           16 ANT-PLSVSQILTCILPSGGGDAEN-LQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~-~~t~~eLA~~~~~~~g~~~~~-l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      ..+ +.|..|||+.+    ++++.. +.+.++.|...|+|..+..+...-.+.+|+.+..+..
T Consensus        26 ~~~~~~t~~eLa~~l----~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~   84 (95)
T 2pg4_A           26 KKGYEPSLAEIVKAS----GVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAE   84 (95)
T ss_dssp             HTTCCCCHHHHHHHH----CCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHH
T ss_pred             hcCCCCCHHHHHHHH----CCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHH
Confidence            345 89999999999    999999 9999999999999995432222235889998876654

>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A

Probab=95.27  E-value=0.029  Score=47.52  Aligned_cols=62  Identities=13%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +..++.+.-.+++++..+||+.+    ++++..+.+.++.|...|+|.+..    ...+.+|+.|+.+..
T Consensus         8 L~~I~~l~~~~~~~~~~~lA~~l----~vs~~tvs~~l~~Le~~GlV~r~~----~~~i~LT~~G~~~~~   69 (214)
T 3hrs_A            8 LKCLYELGTRHNKITNKEIAQLM----QVSPPAVTEMMKKLLAEELLIKDK----KAGYLLTDLGLKLVS   69 (214)
T ss_dssp             HHHHHHTTSSCSCCCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcCHHHHHHHH----CCChhHHHHHHHHHHHCCCEEEec----CCCeEECHHHHHHHH
Confidence            44555555567899999999999    999999999999999999999986    678999999976654

>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}

Probab=95.23  E-value=0.022  Score=44.09  Aligned_cols=47  Identities=19%  Similarity=0.210  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      +++.|.+|||+.+    ++++..++++|..|...|+|+...+  ..|.|.++.
T Consensus        24 ~~~~s~~ela~~~----~i~~~~v~~il~~L~~~Glv~~~~g--~~ggy~L~~   70 (129)
T 2y75_A           24 EGPTSLKSIAQTN----NLSEHYLEQLVSPLRNAGLVKSIRG--AYGGYVLGS   70 (129)
T ss_dssp             SCCBCHHHHHHHT----TSCHHHHHHHHHHHHHTTSEEEC------CCEEESS
T ss_pred             CCcCCHHHHHHHH----CcCHHHHHHHHHHHHHCCceEecCC--CCCceEeCC
Confidence            4689999999999    9999999999999999999987641  136788775

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=95.21  E-value=0.025  Score=41.37  Aligned_cols=63  Identities=19%  Similarity=0.166  Sum_probs=50.3

Q ss_pred             hhhhhhcCCCCCCHHHH----HHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707            9 GRKKVRLANTPLSVSQI----LTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eL----A~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      .++..+..+++.|..||    |+.+    ++++..+.++++.|...|++.+.... ....|.+|+.|..+..
T Consensus        12 ~iL~~l~~~~~~~~~el~~~la~~l----~is~~tvs~~l~~Le~~gli~r~~~~-r~~~~~LT~~G~~~~~   78 (99)
T 1tbx_A           12 IVLAYLYDNEGIATYDLYKKVNAEF----PMSTATFYDAKKFLIQEGFVKERQER-GEKRLYLTEKGKLFAI   78 (99)
T ss_dssp             HHHHHHTTCTTCBHHHHHHHHHTTS----CCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHcCCcCHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCEEEEecC-CceEEEECHHHHHHHH
Confidence            34444555689999999    9999    99999999999999999999886421 1346899998877665

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=95.16  E-value=0.014  Score=41.30  Aligned_cols=46  Identities=13%  Similarity=0.094  Sum_probs=40.8

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      +.-+.+.+-.++.++++|||+.+    ++++..++|.|..|...|++.+.
T Consensus         4 L~~Il~~L~~~g~vsv~eLa~~l----~VS~~TIRrdL~~Le~~G~l~R~   49 (78)
T 1xn7_A            4 LIQVRDLLALRGRMEAAQISQTL----NTPQPMINAMLQQLESMGKAVRI   49 (78)
T ss_dssp             HHHHHHHHHHSCSBCHHHHHHHT----TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEe
Confidence            34455666668999999999999    99999999999999999999887

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=95.15  E-value=0.013  Score=42.37  Aligned_cols=47  Identities=6%  Similarity=0.050  Sum_probs=41.3

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +.-+.+.+-.++.++++|||+.+    ++++..++|.|..|...|++.+..
T Consensus         4 L~~Il~~L~~~g~vsv~eLA~~l----~VS~~TIRrDL~~Le~~G~l~R~~   50 (87)
T 2k02_A            4 LMEVRDMLALQGRMEAKQLSARL----QTPQPLIDAMLERMEAMGKVVRIS   50 (87)
T ss_dssp             THHHHHHHHHSCSEEHHHHHHHT----TCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEe
Confidence            34456666668999999999999    999999999999999999999874

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=95.13  E-value=0.019  Score=42.76  Aligned_cols=58  Identities=24%  Similarity=0.204  Sum_probs=44.7

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      ++.++..+. +++.|+.|||+.+    |+++..+.+.|+.|...|++.....+ ....|++++.
T Consensus        28 r~~IL~~L~-~~~~~~~ela~~l----~is~stvs~~L~~L~~~Glv~~~~~g-r~~~y~l~~~   85 (106)
T 1r1u_A           28 RIRIMELLS-VSEASVGHISHQL----NLSQSNVSHQLKLLKSVHLVKAKRQG-QSMIYSLDDI   85 (106)
T ss_dssp             HHHHHHHHH-HCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEESSH
T ss_pred             HHHHHHHHH-hCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChH
Confidence            445555554 7889999999999    99999999999999999999876521 0124666653

>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}

Probab=95.10  E-value=0.019  Score=49.81  Aligned_cols=60  Identities=15%  Similarity=0.325  Sum_probs=50.2

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +...+..++++|..|||+.+    |++...+.|.|+.|...|++++.+   ....|++|+.+..+..
T Consensus       157 IL~~L~~~~~~s~~eLA~~l----glsksTv~r~L~~Le~~GlV~r~~---r~~~~~LT~~G~~l~~  216 (244)
T 2wte_A          157 LLNVLYETKGTGITELAKML----DKSEKTLINKIAELKKFGILTQKG---KDRKVELNELGLNVIK  216 (244)
T ss_dssp             HHHHHHHHTCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEET---TTTEEEECHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEeC---CccEEEECHHHHHHHH
Confidence            33433456899999999999    999999999999999999999874   2568999999977654

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=95.06  E-value=0.017  Score=50.91  Aligned_cols=47  Identities=6%  Similarity=0.163  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ++++|+.|||+.+    |++.-.+.|+|..|+..|+|.+++    +++|++++..
T Consensus        43 ~~~ltl~eia~~l----gl~ksTv~RlL~tL~~~G~v~~~~----~~~Y~LG~~~   89 (275)
T 3mq0_A           43 PRDLTAAELTRFL----DLPKSSAHGLLAVMTELDLLARSA----DGTLRIGPHS   89 (275)
T ss_dssp             SSCEEHHHHHHHH----TCC--CHHHHHHHHHHTTSEEECT----TSEEEECTHH
T ss_pred             CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEECC----CCcEEehHHH
Confidence            4689999999999    999999999999999999999986    5789999854

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=95.02  E-value=0.017  Score=43.37  Aligned_cols=58  Identities=22%  Similarity=0.184  Sum_probs=44.7

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      ++.++..+ .+++.|+.|||+.+    |+++..+.+.|+.|...|+|.....+. ...|++++.
T Consensus        27 r~~IL~~L-~~~~~s~~eLa~~l----gis~stvs~~L~~L~~~GlV~~~~~gr-~~~y~l~~~   84 (108)
T 2kko_A           27 RLQILDLL-AQGERAVEAIATAT----GMNLTTASANLQALKSGGLVEARREGT-RQYYRIAGE   84 (108)
T ss_dssp             THHHHHHH-TTCCEEHHHHHHHH----TCCHHHHHHHHHHHHHHTSEEEEEETT-EEEEEESCH
T ss_pred             HHHHHHHH-HcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEEEeCC-EEEEEEChH
Confidence            34455544 46899999999999    999999999999999999998765210 125777753

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=94.93  E-value=0.053  Score=49.59  Aligned_cols=54  Identities=7%  Similarity=-0.065  Sum_probs=41.3

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC---CCCCceEEeCCCCC
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP---SIPGVTHIGGDMFN  215 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~---~~~ri~~~~~d~~~  215 (309)
                      ...|||||.|.|.++..|+++....+ +++++. +..+...+   ..++++++.+|+++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~-vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~  116 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQ-YSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  116 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSE-EEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCE-EEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence            47899999999999999998754445 888887 33333222   35799999999964

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=94.90  E-value=0.014  Score=42.50  Aligned_cols=64  Identities=20%  Similarity=0.191  Sum_probs=48.5

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhh
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLV   75 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~   75 (309)
                      ..++..+..+++.|..|||+.+    ++++..+.+.|+.|...|++.....  +.....|++|+.+....
T Consensus        19 ~~iL~~L~~~~~~~~~ela~~l----~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~   84 (100)
T 1ub9_A           19 LGIMIFLLPRRKAPFSQIQKVL----DLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEA   84 (100)
T ss_dssp             HHHHHHHHHHSEEEHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred             HHHHHHHHhcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHH
Confidence            4455545456899999999999    9999999999999999999986431  11124688998775433

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=94.90  E-value=0.019  Score=50.27  Aligned_cols=48  Identities=17%  Similarity=0.250  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ++++|+.|||+.+    |++.-.+.|+|..|+..|++.+++   ..++|++++..
T Consensus        19 ~~~lsl~eia~~l----gl~ksT~~RlL~tL~~~G~v~~~~---~~~~Y~lG~~~   66 (260)
T 3r4k_A           19 RLEIGLSDLTRLS----GMNKATVYRLMSELQEAGFVEQVE---GARSYRLGPQV   66 (260)
T ss_dssp             BSEEEHHHHHHHH----CSCHHHHHHHHHHHHHTTSEEECS---SSSEEEECTTH
T ss_pred             CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEcC---CCCcEEcCHHH
Confidence            4689999999999    999999999999999999999986   23799999854

>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}

Probab=94.86  E-value=0.037  Score=44.73  Aligned_cols=47  Identities=19%  Similarity=0.269  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      +++.|.++||+..    ++++..++++|..|...|+|....+  ..|.|.++.
T Consensus        42 ~~~~s~~eIA~~~----~i~~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar   88 (159)
T 3lwf_A           42 DGPISLRSIAQDK----NLSEHYLEQLIGPLRNAGIVKSIRG--AHGGYVLNG   88 (159)
T ss_dssp             SCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEECS--TTCEEEECS
T ss_pred             CCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCeEEEecC--CCCceEecC
Confidence            4689999999999    9999999999999999999987752  146788764

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=94.83  E-value=0.02  Score=43.68  Aligned_cols=60  Identities=15%  Similarity=0.135  Sum_probs=47.3

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      .++.++..+. ++|.|+.|||+.+    |+++..+.+.|+.|...|+|.....+. .-.|++++.+
T Consensus        19 ~R~~Il~~L~-~~~~~~~eLa~~l----~is~~tvs~hL~~L~~~GlV~~~~~gr-~~~y~l~~~~   78 (118)
T 3f6o_A           19 TRRAVLGRLS-RGPATVSELAKPF----DMALPSFMKHIHFLEDSGWIRTHKQGR-VRTCAIEKEP   78 (118)
T ss_dssp             HHHHHHHHHH-TCCEEHHHHHTTC----CSCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEECSHH
T ss_pred             HHHHHHHHHH-hCCCCHHHHHHHh----CcCHHHHHHHHHHHHHCCCeEEEecCC-EEEEEECHHH
Confidence            3445555554 7999999999999    999999999999999999998765221 2368888754

>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}

Probab=94.76  E-value=0.03  Score=44.52  Aligned_cols=55  Identities=16%  Similarity=0.136  Sum_probs=47.0

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +..+++.|..+||+.+    +++...+.+.|+.|...|+|....    +..+.+|+.+..+..
T Consensus        49 l~~~~~~~~~~la~~l----~vs~~tvs~~l~~Le~~Glv~r~~----~~~~~lT~~g~~~~~  103 (155)
T 2h09_A           49 IREVGEARQVDMAARL----GVSQPTVAKMLKRLATMGLIEMIP----WRGVFLTAEGEKLAQ  103 (155)
T ss_dssp             HHHHSCCCHHHHHHHH----TSCHHHHHHHHHHHHHTTCEEEET----TTEEEECHHHHHHHH
T ss_pred             HHhCCCcCHHHHHHHh----CcCHHHHHHHHHHHHHCCCEEEec----CCceEEChhHHHHHH
Confidence            3345789999999999    999999999999999999998875    567899998866543

>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55

Probab=94.75  E-value=0.024  Score=45.17  Aligned_cols=47  Identities=11%  Similarity=0.101  Sum_probs=39.5

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      +++.|.++||+..    ++++..++++|..|...|+|+...+   .|.|.++..
T Consensus        28 ~~~~~~~~iA~~~----~i~~~~l~kil~~L~~~Glv~s~rG---~GGy~L~~~   74 (149)
T 1ylf_A           28 SSLCTSDYMAESV----NTNPVVIRKIMSYLKQAGFVYVNRG---PGGAGLLKD   74 (149)
T ss_dssp             GGGCCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEC------CCEEESSC
T ss_pred             CCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCcEEEccC---CCceEeCCC
Confidence            4689999999999    9999999999999999999987652   466887753

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=94.74  E-value=0.025  Score=45.32  Aligned_cols=61  Identities=20%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhch
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGK   72 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~   72 (309)
                      .++.++..+. +++.|+.|||+.+    |++...+.+-|+.|...|+|.....+. .-.|++++.+.
T Consensus        59 ~R~~IL~~L~-~~~~t~~eLa~~l----gls~stvs~hL~~L~~aGlV~~~~~Gr-~~~y~lt~~~~  119 (151)
T 3f6v_A           59 TRRRLVQLLT-SGEQTVNNLAAHF----PASRSAISQHLRVLTEAGLVTPRKDGR-FRYYRLDPQGL  119 (151)
T ss_dssp             HHHHHHHHGG-GCCEEHHHHHTTS----SSCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEECHHHH
T ss_pred             HHHHHHHHHH-hCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEecCC-EEEEEEChHHH
Confidence            4555666554 7899999999999    999999999999999999998775211 23688888663

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=94.66  E-value=0.031  Score=48.40  Aligned_cols=46  Identities=17%  Similarity=0.153  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ++.|+.|||+.+    |++...+.|+|+.|...|++.+..    ++.|++++..
T Consensus        22 ~~~~~~ela~~~----gl~~stv~r~l~~L~~~G~v~~~~----~~~Y~lg~~~   67 (249)
T 1mkm_A           22 GDVSVSEIAEKF----NMSVSNAYKYMVVLEEKGFVLRKK----DKRYVPGYKL   67 (249)
T ss_dssp             SCBCHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEECT----TSCEEECTHH
T ss_pred             CCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCcEEECC----CCcEEECHHH
Confidence            489999999999    999999999999999999999874    6789998854

>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69

Probab=94.62  E-value=0.033  Score=41.61  Aligned_cols=57  Identities=18%  Similarity=0.241  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHhCcCCC-CCcchHHHHHHHHHcCCceeeecccc--cCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGG-GDAENLQCILRLLTSYGVFSEHREFR--GERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g-~~~~~l~rlL~~L~~~gll~~~~~~~--~~~~y~~t~~~~~l~~   76 (309)
                      .+++.+..||++.+    + +++..+.+.|+.|...|+|++.....  ..-.|++|+.|..+..
T Consensus        35 ~~~~~~~~eL~~~l----~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~   94 (107)
T 2fsw_A           35 NRRIIRYGELKRAI----PGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP   94 (107)
T ss_dssp             TTSCEEHHHHHHHS----TTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred             HhCCcCHHHHHHHc----ccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHH
Confidence            47899999999999    8 99999999999999999998765211  1135999999866553

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=94.47  E-value=0.035  Score=47.86  Aligned_cols=50  Identities=18%  Similarity=0.123  Sum_probs=43.5

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhh
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSL   74 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l   74 (309)
                      ++.|+.|||+.+    |++...+.|+|..|...|++.+++   .+++|++++....+
T Consensus        20 ~~~s~~ela~~~----gl~~stv~r~l~~L~~~G~v~~~~---~~~~Y~lg~~~~~l   69 (241)
T 2xrn_A           20 HGLSLAAIAQLV----GLPRSTVQRIINALEEEFLVEALG---PAGGFRLGPALGQL   69 (241)
T ss_dssp             TCEEHHHHHHHT----TSCHHHHHHHHHHHHTTTSEEECG---GGCEEEECSHHHHH
T ss_pred             CCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEeC---CCCeEEECHHHHHH
Confidence            479999999999    999999999999999999999875   14789999855444

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=94.43  E-value=0.044  Score=47.84  Aligned_cols=47  Identities=11%  Similarity=0.134  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      +++.|+.|||+.+    |++.-.+.|+|..|...|++.++.    +++|++++..
T Consensus        36 ~~~~~~~eia~~~----gl~kstv~r~l~tL~~~G~v~~~~----~~~Y~lg~~~   82 (260)
T 2o0y_A           36 HPTRSLKELVEGT----KLPKTTVVRLVATMCARSVLTSRA----DGSYSLGPEM   82 (260)
T ss_dssp             BSSBCHHHHHHHH----CCCHHHHHHHHHHHHHTTSEEECT----TSCEEECHHH
T ss_pred             CCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEECC----CCeEEecHHH
Confidence            4689999999999    999999999999999999999885    4489998854

>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69

Probab=94.41  E-value=0.041  Score=43.64  Aligned_cols=57  Identities=21%  Similarity=0.254  Sum_probs=46.6

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc-ccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF-RGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~-~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.+..||++.+    |+++..+.+.|+.|...|+|++.... ...-.|++|+.+..+..
T Consensus        34 ~~g~~~~~eLa~~l----gis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~   91 (146)
T 2f2e_A           34 FEGLTRFGEFQKSL----GLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFP   91 (146)
T ss_dssp             HTTCCSHHHHHHHH----CCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHH
T ss_pred             HhCCCCHHHHHHHh----CCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHH
Confidence            36899999999999    99999999999999999999987521 00237999998866553

>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55

Probab=94.40  E-value=0.051  Score=43.00  Aligned_cols=45  Identities=13%  Similarity=0.180  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      .++ |.++||+..    ++++..|+++|..|...|+|....+   .|.|.+..
T Consensus        22 ~~~-s~~~IA~~~----~i~~~~l~kIl~~L~~aGlv~s~rG---~GGy~Lar   66 (145)
T 1xd7_A           22 EKT-SSEIIADSV----NTNPVVVRRMISLLKKADILTSRAG---VPGASLKK   66 (145)
T ss_dssp             SCC-CHHHHHHHH----TSCHHHHHHHHHHHHHTTSEECCSS---SSSCEESS
T ss_pred             CCC-CHHHHHHHH----CcCHHHHHHHHHHHHHCCceEeecC---CCCceecC
Confidence            345 999999999    9999999999999999999987752   45677765

>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A

Probab=94.39  E-value=0.036  Score=40.39  Aligned_cols=52  Identities=10%  Similarity=0.111  Sum_probs=42.0

Q ss_pred             CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           20 LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        20 ~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +|..+||+.+    ++++..+.++++.|...|+|.... +.....|.+|+.|..+..
T Consensus        31 ~t~~eLa~~l----~i~~~tvs~~l~~Le~~Glv~~~~-d~R~~~v~LT~~G~~~~~   82 (95)
T 2qvo_A           31 VYIQYIASKV----NSPHSYVWLIIKKFEEAKMVECEL-EGRTKIIRLTDKGQKIAQ   82 (95)
T ss_dssp             EEHHHHHHHS----SSCHHHHHHHHHHHHHTTSEEEEE-ETTEEEEEECHHHHHHHH
T ss_pred             cCHHHHHHHH----CcCHHHHHHHHHHHHHCcCccCCC-CCCeEEEEEChhHHHHHH
Confidence            9999999999    999999999999999999993322 111225999998876654

>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A

Probab=94.36  E-value=0.04  Score=43.62  Aligned_cols=46  Identities=17%  Similarity=0.145  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      ++.|.++||+..    ++++..++++|..|...|+|....+  ..|.|.+..
T Consensus        27 ~~~s~~~IA~~~----~i~~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar   72 (143)
T 3t8r_A           27 GCISLKSIAEEN----NLSDLYLEQLVGPLRNAGLIRSVRG--AKGGYQLRV   72 (143)
T ss_dssp             CCEEHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEECSS--SSSEEEESS
T ss_pred             CCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCEEEecCC--CCCCeeecC
Confidence            589999999999    9999999999999999999987652  146788875

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=94.35  E-value=0.07  Score=41.12  Aligned_cols=64  Identities=20%  Similarity=0.176  Sum_probs=50.2

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhh-cC
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLV-TD   77 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~-~~   77 (309)
                      ++..+..+++.|..+||+.+    ++++..+.+.++.|...|++.....  |...-.|.+|+.+..+. ..
T Consensus        36 iL~~l~~~~~~~~~ela~~l----~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~~~~  102 (142)
T 3bdd_A           36 ILQTLLKDAPLHQLALQERL----QIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREALITN  102 (142)
T ss_dssp             HHHHHHHHCSBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHTTS
T ss_pred             HHHHHHhCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHH
Confidence            33334345789999999999    9999999999999999999987652  11123599999998777 43

>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A

Probab=94.35  E-value=0.045  Score=42.51  Aligned_cols=61  Identities=21%  Similarity=0.190  Sum_probs=47.8

Q ss_pred             hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..+..+++.|..|||+.+    ++++..+.++++.|...|+|++...  |...-.+.+|+.|+.+..
T Consensus        43 ~~l~~~~~~t~~eLa~~l----~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~  105 (140)
T 3hsr_A           43 MAIENDEKLNIKKLGERV----FLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKS  105 (140)
T ss_dssp             HHSCTTCEEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHH
T ss_pred             HHHHHcCCcCHHHHHHHH----CCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHH
Confidence            334456899999999999    9999999999999999999998642  111236899998877664

>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A

Probab=94.35  E-value=0.038  Score=43.45  Aligned_cols=62  Identities=15%  Similarity=0.110  Sum_probs=46.5

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee----cccccCceEEcChhchhhhc
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH----REFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~----~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +...+ .+++.|..|||+.+    ++++..+.+.++.|...|+|.+.    +.|...-.+.+|+.|..+..
T Consensus        43 iL~~l-~~~~~t~~eLa~~l----~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~  108 (151)
T 3kp7_A           43 VLNML-SIEALTVGQITEKQ----GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIK  108 (151)
T ss_dssp             HHHHH-HHSCBCHHHHHHHH----CSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHH
T ss_pred             HHHHH-HcCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHH
Confidence            34444 67899999999999    99999999999999999999972    22211235788888876654

>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71

Probab=94.33  E-value=0.077  Score=39.02  Aligned_cols=57  Identities=26%  Similarity=0.269  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.+..+||+.+    +++.-.|.|.|..|...|+|.....+.+-+...+|+.++.++.
T Consensus        33 ~g~~~s~~eLa~~l----~l~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l~   89 (96)
T 2obp_A           33 GATPWSLPKIAKRA----QLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALAA   89 (96)
T ss_dssp             TCCCCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHHH
T ss_pred             CCCCcCHHHHHHHh----CCchhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHHH
Confidence            34789999999999    9999999999999999999998653212345788888866544

>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}

Probab=94.28  E-value=0.074  Score=41.89  Aligned_cols=63  Identities=11%  Similarity=0.181  Sum_probs=48.5

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ++..+...++.|..+||+.+    +++...+.++++.|...|+|.+...  |...-.+.+|+.|..+..
T Consensus        48 iL~~l~~~~~~t~~ela~~l----~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~  112 (155)
T 3cdh_A           48 VLACLVDNDAMMITRLAKLS----LMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAE  112 (155)
T ss_dssp             HHHHHSSCSCBCHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHH
T ss_pred             HHHHHHHCCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHH
Confidence            34444456899999999999    9999999999999999999987641  111235889998876654

>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}

Probab=94.25  E-value=0.076  Score=42.32  Aligned_cols=59  Identities=15%  Similarity=0.060  Sum_probs=47.7

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +...+++|..+||+.+    ++++..+.++++.|+..|+|++...  |...-.+.+|+.|..+..
T Consensus        55 l~~~~~~t~~eLa~~l----~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~  115 (162)
T 3k0l_A           55 LAAKPNLSNAKLAERS----FIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLN  115 (162)
T ss_dssp             HHHCTTCCHHHHHHHH----TSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHH
Confidence            3346899999999999    9999999999999999999998652  111235889998876664

>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}

Probab=94.23  E-value=0.047  Score=42.01  Aligned_cols=59  Identities=15%  Similarity=0.210  Sum_probs=46.8

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +..+++.|..+||+.+    ++++..+.+.++.|...|+|.+...  +...-.|.+|+.+..+..
T Consensus        42 l~~~~~~~~~ela~~l----~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~  102 (139)
T 3bja_A           42 LAKSGKVSMSKLIENM----GCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKK  102 (139)
T ss_dssp             HHHSCSEEHHHHHHHC----SSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred             HHHcCCcCHHHHHHHH----CCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHH
Confidence            3346889999999999    9999999999999999999987541  111224889988876654

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=94.23  E-value=0.033  Score=40.92  Aligned_cols=45  Identities=18%  Similarity=0.122  Sum_probs=38.8

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .++..+..+++.|..|||+.+    |+++..+.+.|+.|...|+|....
T Consensus        24 ~il~~l~~~~~~s~~ela~~l----~is~~tv~~~l~~L~~~glv~~~~   68 (109)
T 1sfx_A           24 RIYSLLLERGGMRVSEIAREL----DLSARFVRDRLKVLLKRGFVRREI   68 (109)
T ss_dssp             HHHHHHHHHCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHcCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEEe
Confidence            344444456899999999999    999999999999999999998864

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=94.22  E-value=0.045  Score=42.56  Aligned_cols=62  Identities=15%  Similarity=0.095  Sum_probs=42.8

Q ss_pred             hhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           11 KKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        11 ~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ...+...++.|..+||+.+    ++++..+.++++.|...|+|++...  |...-.+.+|+.|+.+..
T Consensus        43 L~~l~~~~~~t~~eLa~~l----~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~  106 (142)
T 3ech_A           43 LKLIDEQRGLNLQDLGRQM----CRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHL  106 (142)
T ss_dssp             HHHHHHTTTCCHHHHHHHH----C---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHH
T ss_pred             HHHHHhCCCcCHHHHHHHh----CCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHH
Confidence            3334456899999999999    9999999999999999999998652  111224788888876654

>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A

Probab=94.22  E-value=0.079  Score=41.30  Aligned_cols=58  Identities=22%  Similarity=0.256  Sum_probs=47.6

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~   76 (309)
                      ..|+.+..||++.+ |  |+++..|.+.|+.|...|+|++....  ...-.|++|+.|+.+..
T Consensus        36 ~~g~~rf~eL~~~l-~--gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~   95 (131)
T 4a5n_A           36 IDGKKRFNEFRRIC-P--SITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEP   95 (131)
T ss_dssp             TTSCBCHHHHHHHC-T--TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred             hcCCcCHHHHHHHh-c--ccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHH
Confidence            37899999999998 4  88999999999999999999887521  11136999999987764

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=94.14  E-value=0.072  Score=46.33  Aligned_cols=51  Identities=20%  Similarity=0.181  Sum_probs=44.9

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +++.|+.|||+.+    |++...+.|+|..|...|+++++     +++|++++....+..
T Consensus        27 ~~~~~~~eia~~~----gl~~stv~r~l~~L~~~G~v~~~-----~~~Y~Lg~~~~~l~~   77 (257)
T 2g7u_A           27 RPNPTLAELATEA----GLSRPAVRRILLTLQKLGYVAGS-----GGRWSLTPRVLSIGQ   77 (257)
T ss_dssp             CSSCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEE-----TTEEEECGGGHHHHT
T ss_pred             CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeC-----CCEEEEcHHHHHHHH
Confidence            4689999999999    99999999999999999999987     479999987655543

>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}

Probab=94.13  E-value=0.049  Score=42.68  Aligned_cols=59  Identities=15%  Similarity=0.230  Sum_probs=47.1

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +...++.|..+||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.+..+..
T Consensus        49 l~~~~~~t~~ela~~l----~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~  109 (152)
T 3bj6_A           49 LSLTPGATAPQLGAAL----QMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIIT  109 (152)
T ss_dssp             HHHSTTEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHH
Confidence            3346799999999999    9999999999999999999998642  111236889988876654

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*

Probab=94.08  E-value=0.049  Score=41.91  Aligned_cols=59  Identities=15%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +..+++.|..|||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.+..+..
T Consensus        38 l~~~~~~~~~ela~~l----~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~   98 (138)
T 3bpv_A           38 IHREPGIKQDELATFF----HVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIP   98 (138)
T ss_dssp             HHHSTTCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHH
T ss_pred             HHHcCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHH
Confidence            3346899999999999    9999999999999999999998541  111124788888866554

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=94.05  E-value=0.094  Score=40.64  Aligned_cols=62  Identities=13%  Similarity=0.111  Sum_probs=48.4

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ++..+. +++.|..+||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.+..+..
T Consensus        42 iL~~l~-~~~~~~~ela~~l----~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~  105 (146)
T 2gxg_A           42 VLRATS-DGPKTMAYLANRY----FVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFN  105 (146)
T ss_dssp             HHHHHT-TSCBCHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred             HHHHHh-cCCcCHHHHHHHh----CCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHH
Confidence            344444 7899999999999    9999999999999999999987642  111224888988876654

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=94.01  E-value=0.054  Score=42.20  Aligned_cols=59  Identities=19%  Similarity=0.156  Sum_probs=47.5

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +...++.|..+||+.+    ++++..+.++++.|...|+|.+...  |...-.+.+|+.|..+..
T Consensus        40 l~~~~~~t~~eLa~~l----~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~  100 (145)
T 3g3z_A           40 LATEGSRTQKHIGEKW----SLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAA  100 (145)
T ss_dssp             HHHHCSBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHH
Confidence            3345789999999999    9999999999999999999997542  111235999999877654

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=93.93  E-value=0.022  Score=64.65  Aligned_cols=97  Identities=22%  Similarity=0.150  Sum_probs=46.5

Q ss_pred             cceEEEecCCccHHHHHHHHhcCC-----CceEEEeec-hhHHhhCCCC---CCceEEeCCCCCC---CCC-Cceeeehh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHF-----ICEGINFDL-PEVVGEAPSI---PGVTHIGGDMFNS---IPA-ANAIFMKW  227 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~-----~~~~~~~D~-p~~~~~a~~~---~ri~~~~~d~~~~---~p~-~D~i~~~~  227 (309)
                      ..+||+||+|+|.....+++...+     .+ .+.-|. +...+.+++.   -.++....|...+   .+. .|+|+.++
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~-yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLD-YTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEE-EEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccce-EEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence            468999999999877666655432     13 566676 4455555543   1222222233222   122 49999999


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +||.-++.  .+.|+++++.|+|||++++.|..
T Consensus      1320 vl~~t~~~--~~~l~~~~~lL~p~G~l~~~e~~ 1350 (2512)
T 2vz8_A         1320 ALATLGDP--AVAVGNMAATLKEGGFLLLHTLL 1350 (2512)
T ss_dssp             C----------------------CCEEEEEEC-
T ss_pred             cccccccH--HHHHHHHHHhcCCCcEEEEEecc
Confidence            99965544  47899999999999999998753

>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0

Probab=93.92  E-value=0.078  Score=42.89  Aligned_cols=48  Identities=13%  Similarity=0.200  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      +++.|.++||+..    ++++..++++|..|...|+|+...+  ..|.|++...
T Consensus        26 ~~~~s~~~IA~~~----~is~~~l~kil~~L~~aGlv~s~rG--~~GGy~Lar~   73 (162)
T 3k69_A           26 DSKVASRELAQSL----HLNPVMIRNILSVLHKHGYLTGTVG--KNGGYQLDLA   73 (162)
T ss_dssp             TSCBCHHHHHHHH----TSCGGGTHHHHHHHHHTTSSEEECS--TTCEEECCSC
T ss_pred             CCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeecC--CCCCeEecCC
Confidence            5689999999999    9999999999999999999977652  1457888753

>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=93.91  E-value=0.11  Score=40.27  Aligned_cols=58  Identities=17%  Similarity=0.192  Sum_probs=46.6

Q ss_pred             cCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           15 LANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        15 l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..+++.|..+||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.+..+..
T Consensus        48 ~~~~~~t~~~la~~l----~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~  107 (146)
T 2fbh_A           48 RHRDSPTQRELAQSV----GVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA  107 (146)
T ss_dssp             HCSSCCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred             HcCCCCCHHHHHHHh----CCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHH
Confidence            357899999999999    9999999999999999999988642  111234888888766554

>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}

Probab=93.90  E-value=0.057  Score=42.17  Aligned_cols=61  Identities=20%  Similarity=0.201  Sum_probs=45.7

Q ss_pred             hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..+...++.|..+||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.|..+..
T Consensus        47 ~~l~~~~~~t~~ela~~l----~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~  109 (148)
T 3nrv_A           47 SVLSSASDCSVQKISDIL----GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYE  109 (148)
T ss_dssp             HHHHHSSSBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHH
T ss_pred             HHHHcCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHH
Confidence            333356799999999999    9999999999999999999987642  111245888888866554

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=93.87  E-value=0.12  Score=38.51  Aligned_cols=57  Identities=25%  Similarity=0.256  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhh
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLV   75 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~   75 (309)
                      .+++.+..||++.+ +  |+++..+.+.|+.|...|+|++....  ...-.|++|+.+..+.
T Consensus        24 ~~~~~~~~eLa~~l-~--~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~   82 (107)
T 2hzt_A           24 THGKKRTSELKRLM-P--NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE   82 (107)
T ss_dssp             TTCCBCHHHHHHHC-T--TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred             HhCCCCHHHHHHHh-c--CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence            47899999999996 3  88999999999999999999876521  1113599999886554

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=93.87  E-value=0.049  Score=42.35  Aligned_cols=57  Identities=25%  Similarity=0.248  Sum_probs=46.3

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..++.|..|||+.+    ++++..+.++++.|...|+|++...  |...-.+.+|+.|..+..
T Consensus        48 ~~~~~t~~eLa~~l----~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~  106 (143)
T 3oop_A           48 ANEPISQKEIALWT----KKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETT  106 (143)
T ss_dssp             HHSSEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHH
T ss_pred             HcCCcCHHHHHHHH----CCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHH
Confidence            45899999999999    9999999999999999999987642  111235889998876654

>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28

Probab=93.83  E-value=0.056  Score=41.96  Aligned_cols=57  Identities=12%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.|..+||+.+    ++++..+.+.++.|...|+|.....  +...-.|.+|+.+..+..
T Consensus        44 ~~~~~~~~~la~~l----~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~  102 (145)
T 2a61_A           44 FEGPKRPGELSVLL----GVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE  102 (145)
T ss_dssp             HHCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred             HcCCCCHHHHHHHH----CCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHH
Confidence            46789999999999    9999999999999999999988641  111125889998876654

>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28

Probab=93.82  E-value=0.059  Score=41.45  Aligned_cols=57  Identities=14%  Similarity=0.106  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.|..+||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.|..+..
T Consensus        45 ~~~~~~~~~la~~l----~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~  103 (138)
T 1jgs_A           45 CAACITPVELKKVL----SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE  103 (138)
T ss_dssp             HHSSBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred             hcCCCCHHHHHHHH----CCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHH
Confidence            45789999999999    9999999999999999999988642  111224889998876654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=93.82  E-value=0.057  Score=47.94  Aligned_cols=92  Identities=17%  Similarity=0.168  Sum_probs=59.2

Q ss_pred             CCCcceEEEecC------CccHHHHHHHHhcCC-CceEEEeechhHHhhCCCCCCceEEeCCCCCC-CCC-Cceeee---
Q 021707          158 FKGVKRLVDVGG------SAGDCLRMILQKHHF-ICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS-IPA-ANAIFM---  225 (309)
Q Consensus       158 ~~~~~~vlDvG~------G~G~~~~~l~~~~p~-~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~-~p~-~D~i~~---  225 (309)
                      .+.+.+|||+|+      -.|.+  .+.+..|. .. ++..|+.++...+    . .++.||..+. ... .|+|+.   
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~-VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMA  178 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTL-LVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMY  178 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCE-EEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcE-EEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCC
Confidence            456789999996      66773  44556786 57 9999986554322    2 4488887554 222 488873   


Q ss_pred             ----hhhhhcC--ChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          226 ----KWVLATW--TDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       226 ----~~vlh~~--~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                          .++-++-  ...-+..+|.=+.+.|+|||.+++-
T Consensus       179 PNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          179 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             CTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence                1111111  1224667788888999999988876

>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A

Probab=93.81  E-value=0.062  Score=42.24  Aligned_cols=62  Identities=26%  Similarity=0.251  Sum_probs=48.2

Q ss_pred             hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhcC
Q 021707           12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~~   77 (309)
                      ..+..++++|..+||+.+    +++...+.+.++.|...|+|.+...  +...-.+.+|+.+..+...
T Consensus        54 ~~l~~~~~~t~~ela~~l----~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~  117 (153)
T 2pex_A           54 LVLWETDERSVSEIGERL----YLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK  117 (153)
T ss_dssp             HHHHHSCSEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred             HHHHhCCCcCHHHHHHHh----CCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence            333346889999999999    9999999999999999999988641  1112358999999877654

>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69

Probab=93.80  E-value=0.048  Score=42.45  Aligned_cols=57  Identities=19%  Similarity=0.222  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHhCcCCC-CCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGG-GDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g-~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.+..||++.+    + +++..+.+.|+.|...|+|++....  ...-.|++|+.+..+..
T Consensus        45 ~~g~~~~~eLa~~l----~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~  104 (131)
T 1yyv_A           45 RDGTHRFSDLRRXM----GGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSD  104 (131)
T ss_dssp             GGCCEEHHHHHHHS----TTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred             HcCCCCHHHHHHHh----ccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHH
Confidence            37899999999998    6 9999999999999999999876521  11136999999876653

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=93.78  E-value=0.11  Score=39.16  Aligned_cols=56  Identities=23%  Similarity=0.306  Sum_probs=46.6

Q ss_pred             CCCCCC--HHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           16 ANTPLS--VSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t--~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      .+|+.+  +.||++.+ |  |+++..+.+.|+.|...|+|++...  ....|++|+.|+.+..
T Consensus        37 ~~g~~~~~~~eL~~~l-~--gis~~~ls~~L~~Le~~GlV~r~~~--r~~~y~LT~~G~~l~~   94 (111)
T 3df8_A           37 GNGSTRQNFNDIRSSI-P--GISSTILSRRIKDLIDSGLVERRSG--QITTYALTEKGMNVRN   94 (111)
T ss_dssp             TSSSSCBCHHHHHHTS-T--TCCHHHHHHHHHHHHHTTSEEEEES--SSEEEEECHHHHHHHH
T ss_pred             hcCCCCCCHHHHHHHc-c--CCCHHHHHHHHHHHHHCCCEEEeec--CcEEEEECccHHHHHH
Confidence            478888  99999998 3  5999999999999999999998742  1357999999876654

>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=93.75  E-value=0.057  Score=41.56  Aligned_cols=62  Identities=15%  Similarity=0.110  Sum_probs=47.5

Q ss_pred             hhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           11 KKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        11 ~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +..+...++.|..+||+.+    ++++..+.+.++.|...|+|.....  |...-.|.+|+.+..+..
T Consensus        44 L~~l~~~~~~t~~ela~~l----~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~  107 (140)
T 2nnn_A           44 LVRLGETGPCPQNQLGRLT----AMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELE  107 (140)
T ss_dssp             HHHHHHHSSBCHHHHHHHT----TCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHH
Confidence            3333345799999999999    9999999999999999999988641  111124889988876654

>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}

Probab=93.70  E-value=0.069  Score=41.97  Aligned_cols=59  Identities=14%  Similarity=0.097  Sum_probs=46.3

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceee--ecc--cccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSE--HRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~--~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +...+++|..+||+.+    ++++..+.++++.|...|+|.+  ...  |...-.+.+|+.+..+..
T Consensus        50 l~~~~~~t~~eLa~~l----~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~  112 (154)
T 2qww_A           50 IYSTPGISVADLTKRL----IITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSK  112 (154)
T ss_dssp             HHHSTTEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHH
Confidence            3346789999999999    9999999999999999999998  431  111235899998876654

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=93.69  E-value=0.099  Score=40.57  Aligned_cols=62  Identities=11%  Similarity=0.171  Sum_probs=44.9

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +...+..++ .|..|||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.+..+..
T Consensus        43 iL~~l~~~~-~t~~eLa~~l----~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~  106 (146)
T 3tgn_A           43 ILMLLSEES-LTNSELARRL----NVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAE  106 (146)
T ss_dssp             HHHHHTTCC-CCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHH
T ss_pred             HHHHHHhCC-CCHHHHHHHH----CCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHH
Confidence            334343445 9999999999    9999999999999999999987642  111245888888866554

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=93.67  E-value=0.077  Score=41.28  Aligned_cols=56  Identities=20%  Similarity=0.242  Sum_probs=45.5

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +++.|..+||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.|..+..
T Consensus        48 ~~~~~~~~la~~l----~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~  105 (147)
T 2hr3_A           48 GGDVTPSELAAAE----RMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY  105 (147)
T ss_dssp             TSCBCHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred             CCCCCHHHHHHHh----CCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHH
Confidence            7899999999999    9999999999999999999988642  111234889998876654

>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}

Probab=93.59  E-value=0.064  Score=46.88  Aligned_cols=46  Identities=15%  Similarity=0.117  Sum_probs=42.0

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      .++.|+.|||+.+    |++.-.+.|+|..|...|+++++     +++|++++..
T Consensus        34 ~~~~~~~eia~~~----gl~~stv~r~l~tL~~~G~v~~~-----~~~Y~Lg~~~   79 (265)
T 2ia2_A           34 NQRRTLSDVARAT----DLTRATARRFLLTLVELGYVATD-----GSAFWLTPRV   79 (265)
T ss_dssp             CSSEEHHHHHHHH----TCCHHHHHHHHHHHHHHTSEEES-----SSEEEECGGG
T ss_pred             CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEec-----CCEEEEcHHH
Confidence            4689999999999    99999999999999999999987     4789998854

>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28

Probab=93.52  E-value=0.07  Score=41.31  Aligned_cols=61  Identities=15%  Similarity=0.260  Sum_probs=47.5

Q ss_pred             hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..+...++.|..+||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.+..+..
T Consensus        44 ~~l~~~~~~~~~ela~~l----~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~  106 (142)
T 2bv6_A           44 TILWDESPVNVKKVVTEL----ALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP  106 (142)
T ss_dssp             HHHHHSSEEEHHHHHHHT----TCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred             HHHHHcCCcCHHHHHHHH----CCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHH
Confidence            333346789999999999    9999999999999999999988652  111225888988866554

>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}

Probab=93.52  E-value=0.073  Score=42.21  Aligned_cols=59  Identities=19%  Similarity=0.162  Sum_probs=46.9

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +..++++|..|||+.+    ++++..+.++++.|+..|+|++...  |...-.+.+|+.|..+..
T Consensus        59 l~~~~~~t~~eLa~~l----~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~  119 (159)
T 3s2w_A           59 LYREDGINQESLSDYL----KIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEP  119 (159)
T ss_dssp             HHHSCSEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHH
Confidence            3346889999999999    9999999999999999999987652  111235889998876654

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=93.47  E-value=0.074  Score=42.19  Aligned_cols=59  Identities=14%  Similarity=0.086  Sum_probs=44.9

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +..+++.|..+||+.+    +++...+.+.++.|...|+|.+...  +...-.|.+|+.+..+..
T Consensus        58 l~~~~~~t~~ela~~l----~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~  118 (162)
T 2fa5_A           58 LALYPGSSASEVSDRT----AMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYE  118 (162)
T ss_dssp             HHHSTTCCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHH
Confidence            3346899999999999    9999999999999999999987541  111235888888876654

>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28

Probab=93.39  E-value=0.077  Score=41.12  Aligned_cols=62  Identities=16%  Similarity=0.132  Sum_probs=47.9

Q ss_pred             hhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           11 KKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        11 ~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +..+...++.|..+||+.+    ++++..+.+.++.|...|+|.....  |...-.+.+|+.+..+..
T Consensus        35 L~~l~~~~~~t~~~la~~l----~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~   98 (144)
T 1lj9_A           35 LVRVCENPGIIQEKIAELI----KVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP   98 (144)
T ss_dssp             HHHHHHSTTEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred             HHHHHHCcCcCHHHHHHHH----CCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHH
Confidence            3333346789999999999    9999999999999999999988642  111224889988876654

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=93.37  E-value=0.12  Score=39.58  Aligned_cols=57  Identities=21%  Similarity=0.215  Sum_probs=44.3

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      +.++..+ .+++.++.|||+.+    |+++..+.+.|+.|...|++.....+. .-.|++++.
T Consensus        49 l~IL~~L-~~~~~s~~ela~~l----gis~stvs~~L~~Le~~Glv~~~~~gr-~~~y~l~~~  105 (122)
T 1r1t_A           49 LRLLSLL-ARSELCVGDLAQAI----GVSESAVSHQLRSLRNLRLVSYRKQGR-HVYYQLQDH  105 (122)
T ss_dssp             HHHHHHH-TTCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEESSH
T ss_pred             HHHHHHH-HcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEEEeCC-EEEEEEChH
Confidence            4455544 46899999999999    999999999999999999998765211 125777753

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=93.26  E-value=0.087  Score=37.12  Aligned_cols=53  Identities=13%  Similarity=0.127  Sum_probs=41.1

Q ss_pred             hhhhhhhhhhcCC--CCCCHHHHHHHhCcCC-CCCcchHHHHHHHHHcCCceeeec
Q 021707            5 ECRDGRKKVRLAN--TPLSVSQILTCILPSG-GGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         5 ~~~~g~~~~~l~~--~~~t~~eLA~~~~~~~-g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .-+..+++.+...  ++.|++||++.+.... +++...+.|.|+.|+..|+|.+..
T Consensus        17 ~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~   72 (83)
T 2fu4_A           17 LPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHN   72 (83)
T ss_dssp             HHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEe
Confidence            3445667766554  6999999999982111 578899999999999999998865

>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}

Probab=93.24  E-value=0.041  Score=40.48  Aligned_cols=60  Identities=18%  Similarity=0.122  Sum_probs=46.2

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      .++.++..++.+++.|+.|||+.+    |+++..+.+-|+.|... ++.....+. .-.|++++..
T Consensus        28 ~Rl~IL~~l~~~~~~~~~ela~~l----~is~stvs~hL~~L~~~-lv~~~~~gr-~~~y~l~~~~   87 (99)
T 2zkz_A           28 MRLKIVNELYKHKALNVTQIIQIL----KLPQSTVSQHLCKMRGK-VLKRNRQGL-EIYYSINNPK   87 (99)
T ss_dssp             HHHHHHHHHHHHSCEEHHHHHHHH----TCCHHHHHHHHHHHBTT-TBEEEEETT-EEEEECCCHH
T ss_pred             HHHHHHHHHHHCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHH-hhhheEeCc-EEEEEEChHH
Confidence            345566555567899999999999    99999999999999999 998665221 2357777644

>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A

Probab=93.22  E-value=0.11  Score=38.03  Aligned_cols=53  Identities=6%  Similarity=0.136  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHH-HhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcC
Q 021707           16 ANTPLSVSQILT-CILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        16 ~~~~~t~~eLA~-~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~   77 (309)
                      .+++.|..+||+ ..    +++.-.+.|-++.|...|+|+..+    +| +.+|+.+..++..
T Consensus        27 ~~~~~t~~~Lae~~l----~~drstvsrnl~~L~r~GlVe~~~----~D-l~LT~~G~~~l~~   80 (95)
T 1bja_A           27 KKDFITAAEVREVHP----DLGNAVVNSNIGVLIKKGLVEKSG----DG-LIITGEAQDIISN   80 (95)
T ss_dssp             HSTTBCHHHHHHTCT----TSCHHHHHHHHHHHHTTTSEEEET----TE-EEECHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHh----cccHHHHHHHHHHHHHCCCeecCC----CC-eeeCHhHHHHHHH
Confidence            467999999999 99    999999999999999999999333    44 9999999877654

>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}

Probab=93.20  E-value=0.078  Score=42.08  Aligned_cols=61  Identities=15%  Similarity=0.140  Sum_probs=47.7

Q ss_pred             hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..+...++.|..+||+.+    +++...+.++++.|...|+|.+...  +...-.|.+|+.+..+..
T Consensus        59 ~~l~~~~~~t~~ela~~l----~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~  121 (162)
T 3cjn_A           59 AILSAKDGLPIGTLGIFA----VVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYD  121 (162)
T ss_dssp             HHHHHSCSEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHH----CCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence            333346899999999999    9999999999999999999988641  111235889988876554

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.18  E-value=0.065  Score=47.62  Aligned_cols=50  Identities=12%  Similarity=0.076  Sum_probs=36.9

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS  202 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~  202 (309)
                      ...++..+.  .....|||++||+|..+.++++..  .+ ++++|+ +.+++.+++
T Consensus       225 ~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~g--~~-~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          225 AERLVRMFS--FVGDVVLDPFAGTGTTLIAAARWG--RR-ALGVELVPRYAQLAKE  275 (297)
T ss_dssp             HHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHcC--Ce-EEEEeCCHHHHHHHHH
Confidence            344555442  346799999999999999988764  46 999998 666666553

>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28

Probab=93.16  E-value=0.12  Score=39.84  Aligned_cols=54  Identities=9%  Similarity=0.048  Sum_probs=43.9

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +.|..+||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.+..+..
T Consensus        50 ~~~~~ela~~l----~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~  105 (141)
T 3bro_A           50 EVLQRDLESEF----SIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET  105 (141)
T ss_dssp             CCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred             CcCHHHHHHHH----CCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHH
Confidence            89999999999    9999999999999999999987642  111225888988865554

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=93.10  E-value=0.084  Score=37.14  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=34.5

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +|.|+.|||+.+    |+++..+++-|..|...|++....
T Consensus        23 ~~psv~EIa~~l----gvS~~TVrr~L~~Le~kG~I~R~~   58 (77)
T 2jt1_A           23 APVKTRDIADAA----GLSIYQVRLYLEQLHDVGVLEKVN   58 (77)
T ss_dssp             SCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEES
T ss_pred             CCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCcEEecC
Confidence            799999999999    999999999999999999999885

>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0

Probab=93.09  E-value=0.094  Score=40.40  Aligned_cols=55  Identities=18%  Similarity=0.198  Sum_probs=44.9

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ++.|..+||+.+    ++++..+.++++.|...|+|++...  |...-.+.+|+.|..+..
T Consensus        46 ~~~t~~ela~~l----~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~  102 (139)
T 3eco_A           46 DGLTQNDIAKAL----QRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE  102 (139)
T ss_dssp             TCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred             CCcCHHHHHHHh----CCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence            499999999999    9999999999999999999987642  111235889988876664

>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28

Probab=93.02  E-value=0.059  Score=42.36  Aligned_cols=57  Identities=18%  Similarity=0.151  Sum_probs=45.7

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..++.|..+||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.+..+..
T Consensus        48 ~~~~~t~~ela~~l----~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~  106 (155)
T 1s3j_A           48 KHGSLKVSEIAERM----EVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFE  106 (155)
T ss_dssp             HHSEEEHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred             HcCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHH
Confidence            45789999999999    9999999999999999999988642  111125888988866554

>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}

Probab=92.92  E-value=0.13  Score=40.99  Aligned_cols=86  Identities=22%  Similarity=0.189  Sum_probs=61.0

Q ss_pred             hhhhhhhhhcCC--CCCCHHHHHHHhCcCCC-CCcchHHHHHHHHHcCCceeeeccc---ccCc----eEEcChhchhhh
Q 021707            6 CRDGRKKVRLAN--TPLSVSQILTCILPSGG-GDAENLQCILRLLTSYGVFSEHREF---RGER----KYSLTEIGKSLV   75 (309)
Q Consensus         6 ~~~g~~~~~l~~--~~~t~~eLA~~~~~~~g-~~~~~l~rlL~~L~~~gll~~~~~~---~~~~----~y~~t~~~~~l~   75 (309)
                      .+..++..++..  +..|++||++..    + ++...+.+-|+.|+..|+|++...+   .+.|    .|.+|+.+..++
T Consensus        30 tR~~IL~~Ll~~p~~~~ta~eL~~~l----~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l  105 (151)
T 3u1d_A           30 TRLDVLHQILAQPDGVLSVEELLYRN----PDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALL  105 (151)
T ss_dssp             HHHHHHHHHHHSTTSCBCHHHHHHHC----TTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHhc----CCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHH
Confidence            455666666653  568999999999    7 9999999999999999999865311   1112    799999997766


Q ss_pred             cCCCCCChHHHHHHhcchhhhhhhhhHHHHhc
Q 021707           76 TDAEGLSYAPYVLQHHQDAFMSAWPLVHEAVL  107 (309)
Q Consensus        76 ~~~~~~~~~~~i~~~~~~~~~~~~~~L~~~l~  107 (309)
                      ..-  ..+.          -..+|..|.+.+.
T Consensus       106 ~~y--~~la----------~~~alr~l~~~v~  125 (151)
T 3u1d_A          106 RAV--SMYE----------EAAVWRSVYEQME  125 (151)
T ss_dssp             HHT--TCST----------HHHHTHHHHHHSC
T ss_pred             HHh--HHHh----------HHHHHHHHHHHhh
Confidence            431  1111          1257788888873

>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}

Probab=92.92  E-value=0.1  Score=40.75  Aligned_cols=57  Identities=14%  Similarity=0.191  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..++.|..+||+.+    ++++..+.+.++.|...|+|.....  |...-.+.+|+.+..+..
T Consensus        53 ~~~~~t~~ela~~l----~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~  111 (150)
T 2rdp_A           53 EEGDLTVGELSNKM----YLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIE  111 (150)
T ss_dssp             HHCSBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHH
T ss_pred             HcCCCCHHHHHHHH----CCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHH
Confidence            45789999999999    9999999999999999999988641  111234889988876654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.91  E-value=0.15  Score=50.77  Aligned_cols=103  Identities=15%  Similarity=0.158  Sum_probs=79.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhcC--------CCceEEEeechhHHhhCCC-----------------------------
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHH--------FICEGINFDLPEVVGEAPS-----------------------------  202 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p--------~~~~~~~~D~p~~~~~a~~-----------------------------  202 (309)
                      +...||-+|||.=....+|...+|        +++ .+=+|+|++++..++                             
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~-~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  185 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVS-FIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL  185 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEE-EEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCE-EEECccHHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence            357899999999999999998866        566 788888887754321                             


Q ss_pred             -CCCceEEeCCCCCC--C----------CC-C-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          203 -IPGVTHIGGDMFNS--I----------PA-A-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       203 -~~ri~~~~~d~~~~--~----------p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                       .++.++++.|+.+.  +          .. . =++++=-+|.+++++++.++|+.+.+ + |++.+++.|.+.+..+
T Consensus       186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~  261 (695)
T 2zwa_A          186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGP  261 (695)
T ss_dssp             ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCT
T ss_pred             cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCC
Confidence             04899999999873  1          22 2 35666789999999999999999984 5 7889999999877643

>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}

Probab=92.88  E-value=0.065  Score=42.08  Aligned_cols=59  Identities=17%  Similarity=0.210  Sum_probs=45.1

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +...+++|..+||+.+    ++++..+.++++.|+..|+|++...  |...-.+.+|+.|..+..
T Consensus        50 l~~~~~~~~~eLa~~l----~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~  110 (149)
T 4hbl_A           50 LWEENPQTLNSIGRHL----DLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQE  110 (149)
T ss_dssp             HHHSSSEEHHHHHHHH----TCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHH
Confidence            3346899999999999    9999999999999999999997642  111235889988876553

>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}

Probab=92.87  E-value=0.088  Score=41.63  Aligned_cols=57  Identities=16%  Similarity=0.149  Sum_probs=44.9

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.|..+||+.+    ++++..+.++++.|...|+|.+...  |...-.+.+|+.+..+..
T Consensus        59 ~~~~~~~~ela~~l----~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~  117 (160)
T 3boq_A           59 NPDGLSMGKLSGAL----KVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFK  117 (160)
T ss_dssp             CTTCEEHHHHHHHC----SSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHH
T ss_pred             cCCCCCHHHHHHHH----CCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHH
Confidence            56899999999999    9999999999999999999988641  111224889988876654

>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}

Probab=92.77  E-value=0.081  Score=41.10  Aligned_cols=58  Identities=12%  Similarity=0.092  Sum_probs=45.5

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~   76 (309)
                      +...++ |..+||+.+    ++++..+.+.++.|...|+|.+....  ...-.+.+|+.|..+..
T Consensus        46 l~~~~~-~~~~la~~l----~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~  105 (144)
T 3f3x_A           46 TSEEPR-SMVYLANRY----FVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLL  105 (144)
T ss_dssp             HHHSCE-EHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred             HHHCCC-CHHHHHHHH----CCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHH
Confidence            334555 999999999    99999999999999999999886521  00125899998876654

>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28

Probab=92.71  E-value=0.12  Score=40.61  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=47.5

Q ss_pred             hhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           12 KVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        12 ~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..+...++.|..+||+.+    +++...+.+.++.|+..|+|.+...  +...-.+.+|+.+..+..
T Consensus        51 ~~l~~~~~~t~~ela~~l----~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~  113 (154)
T 2eth_A           51 LYVALFGPKKMKEIAEFL----STTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG  113 (154)
T ss_dssp             HHHHHHCCBCHHHHHHHT----TSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHH
Confidence            333345789999999999    9999999999999999999988641  111234888988876654

>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=92.68  E-value=0.07  Score=41.12  Aligned_cols=59  Identities=14%  Similarity=0.061  Sum_probs=46.5

Q ss_pred             hcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        14 ~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +...++.|..+||+.+    ++++..+.+.++.|...|+|.+...  |...-.+.+|+.+..+..
T Consensus        45 l~~~~~~t~~ela~~l----~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~  105 (142)
T 2fbi_A           45 LRQQGEMESYQLANQA----CILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV  105 (142)
T ss_dssp             HHHHCSEEHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHH----CCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHH
Confidence            3345789999999999    9999999999999999999987641  111124889988876654

>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}

Probab=92.64  E-value=0.079  Score=42.17  Aligned_cols=57  Identities=21%  Similarity=0.141  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..+++|..|||+.+    ++++..+.++++.|...|+|.+...  |...-.+.+|+.|..+..
T Consensus        64 ~~~~~t~~eLa~~l----~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~  122 (161)
T 3e6m_A           64 AYGELTVGQLATLG----VMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA  122 (161)
T ss_dssp             HHSEEEHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred             hCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence            35789999999999    9999999999999999999997652  111235899998876664

>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}

Probab=92.64  E-value=0.082  Score=42.48  Aligned_cols=57  Identities=18%  Similarity=0.253  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..+++|..|||+.+    +++...+.++++.|+..|+|.+...  |...-.+.+|+.+..+..
T Consensus        56 ~~~~~t~~eLa~~l----~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~  114 (168)
T 2nyx_A           56 NHGPINLATLATLL----GVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR  114 (168)
T ss_dssp             HHCSEEHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred             HcCCCCHHHHHHHh----CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence            45789999999999    9999999999999999999988542  111234889998876654

>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D

Probab=92.60  E-value=0.066  Score=41.08  Aligned_cols=55  Identities=7%  Similarity=0.112  Sum_probs=45.3

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ++.|..|||+.+    ++++..+.++++.|...|+|.+...  |...-.+.+|+.|..+..
T Consensus        52 ~~~t~~eLa~~l----~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~  108 (127)
T 2frh_A           52 KEYYLKDIINHL----NYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE  108 (127)
T ss_dssp             SEEEHHHHHHHS----SSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred             CCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence            789999999999    9999999999999999999988531  211235889998876654

>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}

Probab=92.49  E-value=0.11  Score=40.55  Aligned_cols=56  Identities=16%  Similarity=0.217  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ++++|..+||+.+    ++++..+.++++-|+..|+|++...  |...-.+.+|+.|..+..
T Consensus        52 ~~~~t~~eLa~~l----~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~  109 (150)
T 3fm5_A           52 AEGVNQRGVAATM----GLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRD  109 (150)
T ss_dssp             TTCCCSHHHHHHH----TCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHH
T ss_pred             CCCcCHHHHHHHH----CCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHH
Confidence            4578999999999    9999999999999999999988642  111123889988876664

>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28

Probab=92.46  E-value=0.13  Score=41.31  Aligned_cols=56  Identities=25%  Similarity=0.273  Sum_probs=44.7

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ++++|..|||+.+    +++...+.++++.|+..|+|++...  |...-.+.+|+.|+.+..
T Consensus        66 ~~~~t~~eLa~~l----~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~  123 (166)
T 3deu_A           66 PPDQSQIQLAKAI----GIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA  123 (166)
T ss_dssp             CSSEEHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred             CCCCCHHHHHHHH----CCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHH
Confidence            5789999999999    9999999999999999999998652  111235889998876664

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=91.93  E-value=0.47  Score=45.71  Aligned_cols=110  Identities=8%  Similarity=0.019  Sum_probs=67.2

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-------------CCceEEEeec-hhHHhhCCC------CCCce
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-------------FICEGINFDL-PEVVGEAPS------IPGVT  207 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~~D~-p~~~~~a~~------~~ri~  207 (309)
                      +.-+++.++ .....+|+|-.||+|.++.+..++..             ..+ ..++|. +.+...++-      .+.-.
T Consensus       206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~-i~G~E~~~~~~~la~mNl~lhg~~~~~  283 (530)
T 3ufb_A          206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESS-IFGGEAKSLPYLLVQMNLLLHGLEYPR  283 (530)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCC-EEEECCSHHHHHHHHHHHHHHTCSCCE
T ss_pred             HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhh-hhhhhccHHHHHHHHHHHHhcCCcccc
Confidence            444555554 44567999999999999987765421             345 889998 444444432      13446


Q ss_pred             EEeCCCCCC-----CC--CCceeeehhhhh---------cCC-----hhHHHHHHHHHHHhcC-------CCcEEEEecc
Q 021707          208 HIGGDMFNS-----IP--AANAIFMKWVLA---------TWT-----DDECKLIMENCYKALL-------AGGKLIACEP  259 (309)
Q Consensus       208 ~~~~d~~~~-----~p--~~D~i~~~~vlh---------~~~-----d~~~~~iL~~~~~aL~-------pgG~l~i~e~  259 (309)
                      +..+|.+..     .+  ..|+|+.+--.-         .++     .+.....+..+.+.|+       |||++.++=+
T Consensus       284 I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP  363 (530)
T 3ufb_A          284 IDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP  363 (530)
T ss_dssp             EECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred             ccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence            677887652     11  259988753331         111     1112345677777776       7999887743

>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B

Probab=91.91  E-value=0.099  Score=36.77  Aligned_cols=48  Identities=15%  Similarity=0.259  Sum_probs=40.1

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCC----CCcchHHHHHHHHHcCCceeeec
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGG----GDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g----~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .+..+.+.+..+++.|+.||++.+    +    +++..+.++|+.|...|+|.+..
T Consensus        10 ~e~~vL~~L~~~~~~t~~ei~~~l----~~~~~~s~~Tv~~~l~rL~~kGlv~r~~   61 (82)
T 1p6r_A           10 AELEVMKVIWKHSSINTNEVIKEL----SKTSTWSPKTIQTMLLRLIKKGALNHHK   61 (82)
T ss_dssp             HHHHHHHHHHTSSSEEHHHHHHHH----HHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHH----hhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence            344555656567899999999999    6    67889999999999999999875

>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50

Probab=91.89  E-value=0.12  Score=37.80  Aligned_cols=37  Identities=11%  Similarity=0.260  Sum_probs=35.3

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +++.|..|||+.+    |++...+.+.|+.|...|++....
T Consensus        34 ~~~~t~~ela~~l----~is~~tv~~~l~~L~~~g~v~~~~   70 (109)
T 2d1h_A           34 EKPITSEELADIF----KLSKTTVENSLKKLIELGLVVRTK   70 (109)
T ss_dssp             CSCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEeec
Confidence            7899999999999    999999999999999999999875

>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*

Probab=91.64  E-value=0.076  Score=41.30  Aligned_cols=58  Identities=22%  Similarity=0.224  Sum_probs=47.1

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhcC
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~~   77 (309)
                      ..++.|..+||+.+    ++++..+.+.++.|...|+|++...  |...-.+.+|+.|..+...
T Consensus        51 ~~~~~~~~~la~~l----~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~  110 (147)
T 1z91_A           51 EHETLTVKKMGEQL----YLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK  110 (147)
T ss_dssp             HHSEEEHHHHHHTT----TCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred             HCCCCCHHHHHHHH----CCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence            45789999999999    9999999999999999999988642  1112348899999777654

>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0

Probab=91.63  E-value=0.13  Score=40.10  Aligned_cols=55  Identities=13%  Similarity=0.199  Sum_probs=37.6

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +++|..+||+.+    ++++..+.++++.|...|+|.+...  |...-.+.+|+.|+.+..
T Consensus        56 ~~~t~~eLa~~l----~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~  112 (148)
T 3jw4_A           56 SGIIQKDLAQFF----GRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVE  112 (148)
T ss_dssp             TCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHH
T ss_pred             CCCCHHHHHHHH----CCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHH
Confidence            799999999999    9999999999999999999987642  111235778888876654

>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}

Probab=91.63  E-value=0.15  Score=40.79  Aligned_cols=57  Identities=21%  Similarity=0.267  Sum_probs=43.2

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhcC
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~~   77 (309)
                      ++++|..+||+.+    ++++..+.++++.|+..|+|.+...  |...-.+.+|+.|..+...
T Consensus        60 ~~~~t~~eLa~~l----~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~  118 (168)
T 3u2r_A           60 PEGMATLQIADRL----ISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKD  118 (168)
T ss_dssp             TSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred             CCCcCHHHHHHHH----CCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHH
Confidence            4699999999999    9999999999999999999998652  1111258899988766653

>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36

Probab=91.57  E-value=0.2  Score=38.76  Aligned_cols=50  Identities=18%  Similarity=0.247  Sum_probs=39.9

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      .+++.|..|||+.+    |+++..+.+.|+.|...|+|.......+...|.++.
T Consensus        38 ~~~~~t~~ela~~l----~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~   87 (152)
T 1ku9_A           38 SDKPLTISDIMEEL----KISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV   87 (152)
T ss_dssp             CSSCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred             cCCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence            56899999999999    999999999999999999999863110123455554

>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}

Probab=91.40  E-value=0.17  Score=41.61  Aligned_cols=57  Identities=14%  Similarity=0.243  Sum_probs=47.0

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhcC
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~~   77 (309)
                      ++++|..+||+.+    ++++..+.++++.|+..|+|.+...  |...-.+.+|+.|..+...
T Consensus        55 ~~~~t~~eLa~~l----~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~  113 (189)
T 3nqo_A           55 EEETTLNNIARKM----GTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVT  113 (189)
T ss_dssp             GGGCCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHH
T ss_pred             CCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHH
Confidence            5789999999999    9999999999999999999998652  1112358999999766553

>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28

Probab=91.07  E-value=0.12  Score=43.30  Aligned_cols=57  Identities=16%  Similarity=0.036  Sum_probs=46.0

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..+++|..+||+.+    +++...+.++++.|...|+|.+...  |...-.+.+|+.|..+..
T Consensus        59 ~~~~~t~~eLa~~l----~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~  117 (207)
T 2fxa_A           59 QLNGASISEIAKFG----VMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW  117 (207)
T ss_dssp             HHTSEEHHHHHHHT----TCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred             HCCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHH
Confidence            35789999999999    9999999999999999999988752  111236899999976654

>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}

Probab=91.01  E-value=0.15  Score=40.13  Aligned_cols=56  Identities=14%  Similarity=0.157  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ++++|..+||+.+    ++++..+.++++-|...|+|++...  |...-...+|+.|+.+..
T Consensus        49 ~~~~t~~eLa~~l----~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~  106 (147)
T 4b8x_A           49 SGELPMSKIGERL----MVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVE  106 (147)
T ss_dssp             GGEEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHH
T ss_pred             CCCcCHHHHHHHH----CCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHH
Confidence            4689999999999    9999999999999999999998752  111124889998876654

>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}

Probab=90.93  E-value=0.1  Score=38.52  Aligned_cols=50  Identities=14%  Similarity=0.020  Sum_probs=37.8

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ..+.+.+-.++++|+.||++.+....++++..+.++|+-|+..|+|.+..
T Consensus        38 ~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~   87 (99)
T 2k4b_A           38 LIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK   87 (99)
T ss_dssp             SHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence            34444444568999999999991101245789999999999999999876

>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A

Probab=90.90  E-value=0.083  Score=40.02  Aligned_cols=63  Identities=14%  Similarity=0.138  Sum_probs=45.4

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCC----CCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGG----GDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g----~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +...+..+++.|..|||+.+    +    +++..+.++|+-|...|+|.+...+..--.+.+|+.+..+..
T Consensus        15 vL~~l~~~~~~t~~ela~~l----~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~~   81 (123)
T 1okr_A           15 VMNIIWMKKYASANNIIEEI----QMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYK   81 (123)
T ss_dssp             HHHHHHHHSSEEHHHHHHHH----HHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHHH
T ss_pred             HHHHHHhCCCcCHHHHHHHH----hccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHHH
Confidence            33333346899999999999    8    779999999999999999998752110011457777665543

>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*

Probab=90.86  E-value=0.47  Score=37.39  Aligned_cols=56  Identities=23%  Similarity=0.299  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +++.+..|||+.+    ++++..+.++++.|+..|+|.+...  |...-.+.+|+.|..+..
T Consensus        44 ~~~~~~~eLa~~l----~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~  101 (151)
T 4aik_A           44 PPEQSQIQLAKAI----GIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIE  101 (151)
T ss_dssp             CTTSCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHH
T ss_pred             CCCCcHHHHHHHH----CcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHH
Confidence            4567889999999    9999999999999999999987652  111235889998876664

>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41

Probab=90.86  E-value=0.11  Score=38.67  Aligned_cols=45  Identities=16%  Similarity=0.160  Sum_probs=38.2

Q ss_pred             hhhhhhhcCCC-CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            8 DGRKKVRLANT-PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         8 ~g~~~~~l~~~-~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      +.++..++..| +.|..+||+.+    |++...+++.|..|...|+|...
T Consensus        21 l~Il~~l~~~g~~~s~~eLa~~l----gvs~~tV~~~L~~L~~~GlV~~~   66 (110)
T 1q1h_A           21 IDVLRILLDKGTEMTDEEIANQL----NIKVNDVRKKLNLLEEQGFVSYR   66 (110)
T ss_dssp             HHHHHHHHHHCSCBCHHHHHHTT----TSCHHHHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEE
Confidence            34555554445 89999999999    99999999999999999999876

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=90.78  E-value=0.16  Score=38.84  Aligned_cols=44  Identities=11%  Similarity=0.135  Sum_probs=36.6

Q ss_pred             hhhhhcCC-CC-CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           10 RKKVRLAN-TP-LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        10 ~~~~~l~~-~~-~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ++..+... +| +|+.|||+.+    +++...+.|.|+.|...|+|.+..
T Consensus        31 il~~L~~~~~~~~t~~eLa~~l----~~s~sTV~r~L~~L~~~GlV~r~~   76 (123)
T 3r0a_A           31 VMKSFLNEPDRWIDTDALSKSL----KLDVSTVQRSVKKLHEKEILQRSQ   76 (123)
T ss_dssp             HHHHHHHSTTCCEEHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHCCCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeeC
Confidence            33334433 45 9999999999    999999999999999999998763

>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*

Probab=90.73  E-value=0.18  Score=39.77  Aligned_cols=55  Identities=18%  Similarity=0.239  Sum_probs=37.9

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc-cccCceEEcChhchhhhc
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE-FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~-~~~~~~y~~t~~~~~l~~   76 (309)
                      +++|..|||+.+    ++++..+.++++.|...|+|....+ |...-...+|+.|+.+..
T Consensus        51 ~~~t~~eLa~~l----~~~~~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~~~~~  106 (148)
T 4fx0_A           51 IDLTMSELAARI----GVERTTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGRAALQ  106 (148)
T ss_dssp             ---CHHHHHHHH----TCCHHHHHHHHHHHHHTTSBC-----------CCBCHHHHHHHH
T ss_pred             CCcCHHHHHHHH----CCChhhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHHHHHH
Confidence            578999999999    9999999999999999999954432 111124778888866554

>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}

Probab=90.58  E-value=0.19  Score=37.87  Aligned_cols=45  Identities=22%  Similarity=0.268  Sum_probs=38.0

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +.++..+.. ++.|..+||+.+    ++++..+.+.|+.|...|++....
T Consensus        35 ~~il~~L~~-~~~s~~ela~~l----~is~stvsr~l~~Le~~Glv~~~~   79 (119)
T 2lkp_A           35 LMILTQLRN-GPLPVTDLAEAI----GMEQSAVSHQLRVLRNLGLVVGDR   79 (119)
T ss_dssp             HHHHHHHHH-CCCCHHHHHHHH----SSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHH-CCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEe
Confidence            344444443 789999999999    999999999999999999998764

>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69

Probab=90.27  E-value=0.28  Score=36.73  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~   76 (309)
                      +++.+..|||+.+ +  ++++..+.+.|+.|...|+|++....  ...-.|++|+.|..+..
T Consensus        33 ~~~~~~~eLa~~l-~--~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~~   91 (112)
T 1z7u_A           33 QGTKRNGELMRAL-D--GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD   91 (112)
T ss_dssp             HSCBCHHHHHHHS-T--TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred             hCCCCHHHHHHHh-c--cCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHHH
Confidence            5899999999998 4  78999999999999999999876521  11125999998876553

>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*

Probab=90.06  E-value=0.31  Score=38.31  Aligned_cols=46  Identities=20%  Similarity=0.089  Sum_probs=40.2

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      ...+...+-.+++.|..|||+.+    |+++..+.+.++.|...|++...
T Consensus         5 ~~~il~~L~~~~~~~~~ela~~l----g~s~~tv~~~l~~L~~~G~i~~~   50 (150)
T 2pn6_A            5 DLRILKILQYNAKYSLDEIAREI----RIPKATLSYRIKKLEKDGVIKGY   50 (150)
T ss_dssp             HHHHHHHHTTCTTSCHHHHHHHH----TSCHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCcEEEE
Confidence            34556666667899999999999    99999999999999999999874

>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2

Probab=89.98  E-value=0.32  Score=38.05  Aligned_cols=46  Identities=15%  Similarity=0.120  Sum_probs=39.9

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ..+.+.+-.+++.|..|||+.+    |+++..+.+.++.|...|++....
T Consensus         8 ~~il~~L~~~~~~s~~ela~~l----g~s~~tv~~~l~~L~~~G~i~~~~   53 (144)
T 2cfx_A            8 LNIIEELKKDSRLSMRELGRKI----KLSPPSVTERVRQLESFGIIKQYT   53 (144)
T ss_dssp             HHHHHHHHHCSCCCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEEe
Confidence            3455656567899999999999    999999999999999999998653

>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}

Probab=89.96  E-value=0.86  Score=29.74  Aligned_cols=44  Identities=18%  Similarity=0.293  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      .+.+|+.|+|...    +++-+..+.-|+.|...|-+.+.+     -+|++.|
T Consensus        16 ~QGMTaGEVAA~f----~w~Le~ar~aLeqLf~~G~LRKRs-----SRYrlkp   59 (68)
T 3i71_A           16 RQGMTAGEVAAHF----GWPLEKARNALEQLFSAGTLRKRS-----SRYRLKP   59 (68)
T ss_dssp             TTCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEC-----CEEEECC
T ss_pred             hccccHHHHHHHh----CCcHHHHHHHHHHHHhcchhhhhc-----cccccCc
Confidence            5789999999999    999999999999999999999884     6899886

>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}

Probab=89.88  E-value=0.29  Score=37.75  Aligned_cols=35  Identities=11%  Similarity=0.079  Sum_probs=32.9

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ..|.++||+.+    ++++..+.+.++.|...|+|....
T Consensus        51 ~ps~~~LA~~l----~~s~~~V~~~l~~Le~kGlI~~~~   85 (128)
T 2vn2_A           51 FPTPAELAERM----TVSAAECMEMVRRLLQKGMIAIEE   85 (128)
T ss_dssp             SCCHHHHHHTS----SSCHHHHHHHHHHHHHTTSSEECC
T ss_pred             CCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEe
Confidence            47999999999    999999999999999999999864

>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2

Probab=89.66  E-value=0.48  Score=39.53  Aligned_cols=50  Identities=24%  Similarity=0.306  Sum_probs=44.0

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLV   75 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~   75 (309)
                      ++|++..+||+.+    ++++..++..++-|...|+++...     +...+|+.|+.+.
T Consensus        28 ~~~V~~~~LA~~L----gvS~~SV~~~lkkL~e~GLV~~~~-----~Gv~LTe~G~~~A   77 (200)
T 2p8t_A           28 KEPLGRKQISERL----ELGEGSVRTLLRKLSHLDIIRSKQ-----RGHFLTLKGKEIR   77 (200)
T ss_dssp             TSCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEC-------CEEECHHHHHHH
T ss_pred             cCCccHHHHHHHh----CCCHHHHHHHHHHHHHCCCEEEeC-----CCeEECHHHHHHH
Confidence            5899999999999    999999999999999999999884     5799999996543

>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A

Probab=89.31  E-value=0.31  Score=38.39  Aligned_cols=45  Identities=22%  Similarity=0.145  Sum_probs=39.1

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .+...+..+++.|..|||+.+    |+++..+.+.++.|...|++....
T Consensus        11 ~iL~~L~~~~~~s~~ela~~l----g~s~~tv~~~l~~L~~~G~i~~~~   55 (150)
T 2w25_A           11 ILVRELAADGRATLSELATRA----GLSVSAVQSRVRRLESRGVVQGYS   55 (150)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEE
Confidence            455555567899999999999    999999999999999999997653

>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}

Probab=89.20  E-value=1.9  Score=35.22  Aligned_cols=64  Identities=17%  Similarity=0.175  Sum_probs=48.0

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCC-CCcchHHHHHHHHHcCCceeeecccc----cCceEEcChhchhh
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGG-GDAENLQCILRLLTSYGVFSEHREFR----GERKYSLTEIGKSL   74 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g-~~~~~l~rlL~~L~~~gll~~~~~~~----~~~~y~~t~~~~~l   74 (309)
                      .++.++.++ .++|.|+.|||+.+    + ++...+.+-|+.|...|+|+..++..    ....|++++.+..+
T Consensus        24 ~Rl~il~~L-~~~~~~~~~l~~~l----~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~~   92 (182)
T 4g6q_A           24 LRWRITQLL-IGRSLTTRELAELL----PDVATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGDA   92 (182)
T ss_dssp             HHHHHHHHT-TTSCEEHHHHHHHC----TTBCHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTTS
T ss_pred             HHHHHHHHH-HhCCCCHHHHHHHh----cCCCHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccccccC
Confidence            455666655 57899999999998    7 88889999999999999998655321    12358888765433

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=89.13  E-value=1.5  Score=33.82  Aligned_cols=88  Identities=20%  Similarity=0.143  Sum_probs=53.3

Q ss_pred             cceEEEecCCc-cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC--C-----CCCceeeehhhhhc
Q 021707          161 VKRLVDVGGSA-GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS--I-----PAANAIFMKWVLAT  231 (309)
Q Consensus       161 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~--~-----p~~D~i~~~~vlh~  231 (309)
                      ..+|+=+|+|. |......+... +.+ ++++|. ++.++.+++ ..+.++.+|..++  +     ..+|+++...-   
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~-g~~-v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~---   80 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLAS-DIP-LVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIP---   80 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHT-TCC-EEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCS---
T ss_pred             CCCEEEECcCHHHHHHHHHHHHC-CCC-EEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECC---
Confidence            35788898863 44444444332 567 999998 555655543 5778899998754  1     23587775532   


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEE
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                       ++.++..+.. ..+.+.|+.+++.
T Consensus        81 -~~~~n~~~~~-~a~~~~~~~~iia  103 (140)
T 3fwz_A           81 -NGYEAGEIVA-SARAKNPDIEIIA  103 (140)
T ss_dssp             -CHHHHHHHHH-HHHHHCSSSEEEE
T ss_pred             -ChHHHHHHHH-HHHHHCCCCeEEE
Confidence             2334444444 4555678877664

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=89.09  E-value=0.59  Score=37.35  Aligned_cols=120  Identities=15%  Similarity=0.152  Sum_probs=67.0

Q ss_pred             HHHHHHHHhhcCCcccHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-----hhHHhhCCCCCCc
Q 021707          132 MNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-----PEVVGEAPSIPGV  206 (309)
Q Consensus       132 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-----p~~~~~a~~~~ri  206 (309)
                      ..+.|-+.|.+.... .........  .-..-|+|+|=|+|..=-.+.+.+|+-. +.++|.     |+.+.     +.=
T Consensus        15 RLDsfirRltaQR~~-L~~a~~~v~--~~~GpVlElGLGNGRTydHLRe~~P~R~-I~vfDR~~~~hp~~~P-----~~e   85 (174)
T 3iht_A           15 RLDLFIDRMVSQRAC-LEHAIAQTA--GLSGPVYELGLGNGRTYHHLRQHVQGRE-IYVFERAVASHPDSTP-----PEA   85 (174)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHTT--TCCSCEEEECCTTCHHHHHHHHHCCSSC-EEEEESSCCCCGGGCC-----CGG
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHhc--CCCCceEEecCCCChhHHHHHHhCCCCc-EEEEEeeeccCCCCCC-----chH
Confidence            345666666532221 122223321  2246899999999999999999999999 999997     33222     233


Q ss_pred             eEEeCCCCCCCCC------CceeeehhhhhcCChhHHHHHHH----HHHHhcCCCcEEEEeccc
Q 021707          207 THIGGDMFNSIPA------ANAIFMKWVLATWTDDECKLIME----NCYKALLAGGKLIACEPV  260 (309)
Q Consensus       207 ~~~~~d~~~~~p~------~D~i~~~~vlh~~~d~~~~~iL~----~~~~aL~pgG~l~i~e~~  260 (309)
                      .++-||+.+.+|.      +.+.+...=+-.-..++.....+    -+...|.|||.++-..++
T Consensus        86 ~~ilGdi~~tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl  149 (174)
T 3iht_A           86 QLILGDIRETLPATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM  149 (174)
T ss_dssp             GEEESCHHHHHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred             heecccHHHHHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            5566666543222      12232222221112222223333    345667899977766665

>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0

Probab=88.81  E-value=0.32  Score=36.85  Aligned_cols=76  Identities=14%  Similarity=0.045  Sum_probs=53.6

Q ss_pred             CCcchhhhhhhhhh----cCCCCCCHHHHHHHhCcC--CCCCcchHHHHHHHHHcCCceeeeccc----ccCceEEcChh
Q 021707            1 MEDNECRDGRKKVR----LANTPLSVSQILTCILPS--GGGDAENLQCILRLLTSYGVFSEHREF----RGERKYSLTEI   70 (309)
Q Consensus         1 ~~~~~~~~g~~~~~----l~~~~~t~~eLA~~~~~~--~g~~~~~l~rlL~~L~~~gll~~~~~~----~~~~~y~~t~~   70 (309)
                      |.+++..-|..+..    |.++|.+--||++.+...  -++++..+...|+-|...|+|+.....    ...-.|++|+.
T Consensus         4 m~~~~l~~g~l~~~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~   83 (116)
T 3hhh_A            4 MKQTELLKGILEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSS   83 (116)
T ss_dssp             -CHHHHHTTHHHHHHHHHHHHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHH
T ss_pred             ccHHHHHhhhHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHH
Confidence            45566666666654    357899999999997111  046889999999999999999875321    00125999999


Q ss_pred             chhhhc
Q 021707           71 GKSLVT   76 (309)
Q Consensus        71 ~~~l~~   76 (309)
                      |+..+.
T Consensus        84 G~~~l~   89 (116)
T 3hhh_A           84 GEAELA   89 (116)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            976554

>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*

Probab=88.53  E-value=1.2  Score=39.17  Aligned_cols=80  Identities=13%  Similarity=0.116  Sum_probs=49.5

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCC---C-CceeeehhhhhcCChh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIP---A-ANAIFMKWVLATWTDD  235 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p---~-~D~i~~~~vlh~~~d~  235 (309)
                      ++..|+-||||.|.+..-|.+.+|+..                 .+++|+.-|-....+   . .++.+....   + ++
T Consensus        60 ~~~~VVYVGSApG~HL~~L~~~fp~~f-----------------~~ikWvLiDPap~~~~l~~~~NV~li~~f---v-de  118 (307)
T 3mag_A           60 DGATVVYIGSAPGTHIRYLRDHFYNLG-----------------VIIKWMLIDGRHHDPILNGLRDVTLVTRF---V-DE  118 (307)
T ss_dssp             TTCEEEEESCCSCHHHHHHHHHHHHTT-----------------CCCEEEEEESSCCCGGGTTCTTEEEEECC---C-CH
T ss_pred             CCcEEEEecccCccHHHHHHHhchhhC-----------------CCeEEEEEcCCcchhhhcCCCcEEEEecc---C-CH
Confidence            356999999999999999999999864                 456666655521111   1 244444332   2 33


Q ss_pred             HHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          236 ECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       236 ~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      ..   +++.++.+.....|+|.|.-...
T Consensus       119 ~d---l~~l~~~~~~~~iLLISDIRS~r  143 (307)
T 3mag_A          119 EY---LRSIKKQLHPSKIILISDVRSKR  143 (307)
T ss_dssp             HH---HHHHHHHHTTSCEEEEECCCC--
T ss_pred             HH---HHHHHHhccCCCEEEEEEecCCC
Confidence            22   34455555667788888876654

>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A

Probab=88.36  E-value=0.47  Score=37.86  Aligned_cols=46  Identities=13%  Similarity=0.026  Sum_probs=39.8

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ..+.+.+-.+++.|..|||+.+    |+++..+.+.++.|...|++....
T Consensus        13 ~~il~~L~~~~~~s~~ela~~l----g~s~~tv~~~l~~L~~~G~i~~~~   58 (162)
T 2p5v_A           13 IKILQVLQENGRLTNVELSERV----ALSPSPCLRRLKQLEDAGIVRQYA   58 (162)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEeeec
Confidence            3455555567899999999999    999999999999999999998653

>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...

Probab=88.21  E-value=0.57  Score=39.72  Aligned_cols=50  Identities=14%  Similarity=0.205  Sum_probs=43.5

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +.+..+||+.+    ++++..+.++++.|...|++.+..    +..+.+|+.|+.+..
T Consensus        24 ~~~~~~la~~l----~vs~~tvs~~l~~Le~~GlV~r~~----~~~v~LT~~G~~~~~   73 (226)
T 2qq9_A           24 TPLRARIAERL----EQSGPTVSQTVARMERDGLVVVAS----DRSLQMTPTGRTLAT   73 (226)
T ss_dssp             CCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEECT----TSBEEECHHHHHHHH
T ss_pred             CccHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEeC----CCCeEECHHHHHHHH
Confidence            33559999999    999999999999999999999986    567999999976554

>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A

Probab=87.87  E-value=0.48  Score=40.27  Aligned_cols=50  Identities=16%  Similarity=0.272  Sum_probs=43.8

Q ss_pred             CCCH--HHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           19 PLSV--SQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        19 ~~t~--~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +.|.  .+||+.+    ++++..+.+.|+.|...|+|++..    +..+.+|+.+..+..
T Consensus        22 ~~~~~~~~La~~l----~vs~~tvs~~l~~Le~~GlV~r~~----~~~v~LT~~G~~~~~   73 (230)
T 1fx7_A           22 GVTPLRARIAERL----DQSGPTVSQTVSRMERDGLLRVAG----DRHLELTEKGRALAI   73 (230)
T ss_dssp             TSCCCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEECT----TSCEEECHHHHHHHH
T ss_pred             CCCCcHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEeC----CccEEECHHHHHHHH
Confidence            4555  9999999    999999999999999999999986    567999999976654

>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}

Probab=87.63  E-value=0.54  Score=37.60  Aligned_cols=45  Identities=11%  Similarity=0.150  Sum_probs=40.0

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      ..+.+.+-.++++|..|||+.+    |+++..+.+-++.|...|++...
T Consensus         6 ~~il~~L~~~~~~s~~~la~~l----g~s~~tv~~rl~~L~~~g~i~~~   50 (162)
T 3i4p_A            6 RKILRILQEDSTLAVADLAKKV----GLSTTPCWRRIQKMEEDGVIRRR   50 (162)
T ss_dssp             HHHHHHHTTCSCSCHHHHHHHH----TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHCCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeeec
Confidence            3456666678999999999999    99999999999999999999865

>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2

Probab=87.33  E-value=0.46  Score=37.42  Aligned_cols=45  Identities=11%  Similarity=0.231  Sum_probs=39.6

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      ..+.+.+-.+++.|..|||+.+    |+++..+.+.++.|...|++...
T Consensus        11 ~~il~~L~~~~~~s~~ela~~l----g~s~~tv~~~l~~L~~~G~i~~~   55 (152)
T 2cg4_A           11 RGILEALMGNARTAYAELAKQF----GVSPETIHVRVEKMKQAGIITGA   55 (152)
T ss_dssp             HHHHHHHHHCTTSCHHHHHHHH----TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHcCCcceE
Confidence            3455656567899999999999    99999999999999999999865

>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2

Probab=87.17  E-value=0.47  Score=40.27  Aligned_cols=56  Identities=16%  Similarity=0.175  Sum_probs=46.4

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcC
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~   77 (309)
                      +++.|..++|+.+    ++++..+.+.++.|...|+|++.... ....+++|+.|+.+...
T Consensus        25 ~~~~s~s~aA~~L----~isq~avSr~I~~LE~~~L~~R~~~~-R~~~v~LT~~G~~l~~~   80 (230)
T 3cta_A           25 RAYLTSSKLADML----GISQQSASRIIIDLEKNGYITRTVTK-RGQILNITEKGLDVLYT   80 (230)
T ss_dssp             EEECCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHHH
T ss_pred             CCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEEEcC-CeEEEEECHHHHHHHHH
Confidence            4578999999999    99999999999999999999987311 12579999999877653

>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2

Probab=87.10  E-value=0.36  Score=38.04  Aligned_cols=45  Identities=16%  Similarity=0.160  Sum_probs=39.4

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      ..+.+.+-.+++.|..|||+.+    |+++..+.+.++.|...|++...
T Consensus        10 ~~il~~L~~~~~~s~~ela~~l----g~s~~tv~~~l~~L~~~G~i~~~   54 (151)
T 2cyy_A           10 KKIIKILQNDGKAPLREISKIT----GLAESTIHERIRKLRESGVIKKF   54 (151)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHH----CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEE
Confidence            3455656567899999999999    99999999999999999999865

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=86.99  E-value=0.67  Score=40.84  Aligned_cols=99  Identities=15%  Similarity=0.034  Sum_probs=71.6

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----CCceEEeCCCCCC----CCC---Cceeeehhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----PGVTHIGGDMFNS----IPA---ANAIFMKWV  228 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----~ri~~~~~d~~~~----~p~---~D~i~~~~v  228 (309)
                      ...++|+=+|+|.++.++++.  .-+ ++.+|. +..++..+++    ++++++..|.++.    .|.   .|+|++==.
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~--~d~-~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP  168 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRS--QDR-LYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS  168 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCT--TSE-EEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred             CCCceeEeCCcHHHHHHHcCC--CCe-EEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence            457899999999999999983  445 999998 6666655543    6899999997652    232   488887432


Q ss_pred             hhcCChhHHHHHHHHHHHhc--CCCcEEEEeccccCCC
Q 021707          229 LATWTDDECKLIMENCYKAL--LAGGKLIACEPVLLDD  264 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL--~pgG~l~i~e~~~~~~  264 (309)
                      ...  .++..++++.+.+..  .|+|.++|.=++.+..
T Consensus       169 Ye~--k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~  204 (283)
T 2oo3_A          169 YER--KEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKA  204 (283)
T ss_dssp             CCS--TTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHH
T ss_pred             CCC--CcHHHHHHHHHHHhCccCCCeEEEEEEeccchH
Confidence            221  235567777777654  5899999998888765

>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19

Probab=86.98  E-value=0.68  Score=32.15  Aligned_cols=56  Identities=7%  Similarity=-0.085  Sum_probs=42.2

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      ..++.-+-.++..|+.+||.++    |++...+.|.|.-|...|.|...++  .+-.|+.+.
T Consensus        18 ~~~i~~L~~~~~~Ta~~IAkkL----g~sK~~vNr~LY~L~kkG~V~~~~~--~PP~W~~~~   73 (75)
T 1sfu_A           18 KKEVLSLNTNDYTTAISLSNRL----KINKKKINQQLYKLQKEDTVKMVPS--NPPKWFKNY   73 (75)
T ss_dssp             HHHHHTSCTTCEECHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEECC--SSCEEEECT
T ss_pred             HHHHHhCCCCcchHHHHHHHHH----CCCHHHHHHHHHHHHHCCCEecCCC--CCCCccCCC
Confidence            3444433333459999999999    9999999999999999999987752  144666553

>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}

Probab=86.92  E-value=0.41  Score=37.67  Aligned_cols=46  Identities=11%  Similarity=0.164  Sum_probs=39.7

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ..+.+.+-.+++.|..|||+.+    |+++..+.+.++.|...|++....
T Consensus        12 ~~il~~L~~~~~~s~~ela~~l----g~s~~tv~~~l~~L~~~G~i~~~~   57 (151)
T 2dbb_A           12 MQLVKILSENSRLTYRELADIL----NTTRQRIARRIDKLKKLGIIRKFT   57 (151)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHT----TSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEE
Confidence            3455555567899999999999    999999999999999999998653

>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}

Probab=86.87  E-value=0.39  Score=37.46  Aligned_cols=35  Identities=14%  Similarity=0.067  Sum_probs=33.0

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      ...|.++||+.+    |+++..+.++|.-|...|++...
T Consensus        50 ~~ps~~~LA~~~----~~s~~~v~~~L~~L~~KGlI~i~   84 (135)
T 2v79_A           50 YFPTPNQLQEGM----SISVEECTNRLRMFIQKGFLFIE   84 (135)
T ss_dssp             CSCCHHHHHTTS----SSCHHHHHHHHHHHHHHTSCEEE
T ss_pred             CCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEE
Confidence            568999999999    99999999999999999999984

>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64

Probab=86.86  E-value=0.5  Score=39.51  Aligned_cols=60  Identities=20%  Similarity=0.200  Sum_probs=45.7

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc----ccCceEEcChhc
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF----RGERKYSLTEIG   71 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~----~~~~~y~~t~~~   71 (309)
                      .+.++.++ .++|.|+.|||+.+    |+++..+.+.|+.|...|+|......    ...-.|++|+.+
T Consensus        17 rl~IL~~L-~~~~~s~~eLa~~l----~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~   80 (202)
T 2p4w_A           17 RRRILFLL-TKRPYFVSELSREL----GVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL   80 (202)
T ss_dssp             HHHHHHHH-HHSCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred             HHHHHHHH-HhCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence            34445544 57899999999999    99999999999999999999876421    112257777655

>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}

Probab=86.65  E-value=0.55  Score=38.03  Aligned_cols=44  Identities=11%  Similarity=0.191  Sum_probs=38.5

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      .+.+.+-.+++.|..|||+.+    |+++..+.+.++.|...|++...
T Consensus        21 ~IL~~L~~~~~~s~~eLA~~l----glS~~tv~~~l~~L~~~G~I~~~   64 (171)
T 2ia0_A           21 NILRLLKKDARLTISELSEQL----KKPESTIHFRIKKLQERGVIERY   64 (171)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEee
Confidence            445555567899999999999    99999999999999999999765

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=85.96  E-value=2.6  Score=38.79  Aligned_cols=74  Identities=15%  Similarity=0.217  Sum_probs=43.7

Q ss_pred             chHHHHHHHHhhcCCcccHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-------CCCceEEEeechhHHhhCC-
Q 021707          130 PEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-------HFICEGINFDLPEVVGEAP-  201 (309)
Q Consensus       130 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-------p~~~~~~~~D~p~~~~~a~-  201 (309)
                      |++...|.+..+.+.   .+ +.+... .+..-.|+++|+|+|.++..+++..       ..++ .+++|.+..+...+ 
T Consensus        55 peis~~FGe~la~~~---~~-~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~-y~iVE~Sp~Lr~~Q~  128 (387)
T 1zkd_A           55 PEISQMFGELLGLWS---AS-VWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLS-VHLVEINPVLRQKQQ  128 (387)
T ss_dssp             HHHCHHHHHHHHHHH---HH-HHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEE-EEEECCCHHHHHHHH
T ss_pred             CchHHHHHHHHHHHH---HH-HHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccE-EEEEecCHHHHHHHH
Confidence            455556666554211   11 122222 3445689999999999999888652       2346 89999855444322 


Q ss_pred             ----CCCCceEE
Q 021707          202 ----SIPGVTHI  209 (309)
Q Consensus       202 ----~~~ri~~~  209 (309)
                          ..++|++.
T Consensus       129 ~~L~~~~~v~W~  140 (387)
T 1zkd_A          129 TLLAGIRNIHWH  140 (387)
T ss_dssp             HHSTTCSSEEEE
T ss_pred             HHhcCCCCeEEe
Confidence                22356665

>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A

Probab=85.88  E-value=0.9  Score=37.57  Aligned_cols=43  Identities=16%  Similarity=0.228  Sum_probs=38.0

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      .+...+. +++.|..|||+.+    |+++..+.+-++.|...|++...
T Consensus        24 ~IL~~L~-~~~~s~~eLA~~l----glS~stv~~~l~~Le~~GlI~~~   66 (192)
T 1uly_A           24 KILKLLR-NKEMTISQLSEIL----GKTPQTIYHHIEKLKEAGLVEVK   66 (192)
T ss_dssp             HHHHHHT-TCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHH-cCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEE
Confidence            3455454 7899999999999    99999999999999999999876

>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28

Probab=85.80  E-value=0.29  Score=39.65  Aligned_cols=53  Identities=19%  Similarity=0.202  Sum_probs=42.3

Q ss_pred             CCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           20 LSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        20 ~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +|..+||+.+    ++++..+.++++.|...|+|.+...  |...-.+.+|+.+..+..
T Consensus        87 ~t~~eLa~~l----~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~  141 (181)
T 2fbk_A           87 LRPTELSALA----AISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT  141 (181)
T ss_dssp             BCHHHHHHHC----SCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred             CCHHHHHHHH----CCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence            9999999999    9999999999999999999988641  111225888888876654

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=85.76  E-value=0.27  Score=42.11  Aligned_cols=61  Identities=13%  Similarity=0.122  Sum_probs=46.1

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceee-eccccc----CceEEcChhch
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSE-HREFRG----ERKYSLTEIGK   72 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~-~~~~~~----~~~y~~t~~~~   72 (309)
                      +..++..+ .++|.|+.|||+.+    |+++..+.+.|+.|...|+|.. ...+..    .-.|++++.+.
T Consensus        14 R~~IL~~L-~~g~~s~~ELa~~l----glS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~   79 (232)
T 2qlz_A           14 RRDLLSHL-TCMECYFSLLSSKV----SVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISIAKS   79 (232)
T ss_dssp             HHHHHHHH-TTTTTCSSSSCTTC----CCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECCCEE
T ss_pred             HHHHHHHH-HhCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEccchh
Confidence            34455555 46899999999999    9999999999999999999988 321100    12488887664

>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2

Probab=85.68  E-value=0.44  Score=36.84  Aligned_cols=45  Identities=9%  Similarity=0.079  Sum_probs=38.4

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .+...+-.+++.|..|||+.+    |+++..+.+.++.|...|++....
T Consensus         8 ~il~~L~~~~~~~~~ela~~l----g~s~~tv~~~l~~L~~~G~i~~~~   52 (141)
T 1i1g_A            8 IILEILEKDARTPFTEIAKKL----GISETAVRKRVKALEEKGIIEGYT   52 (141)
T ss_dssp             HHHHHHHHCTTCCHHHHHHHH----TSCHHHHHHHHHHHHHHTSSCCCC
T ss_pred             HHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEeccc
Confidence            344545457889999999999    999999999999999999997653

>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39

Probab=85.63  E-value=0.71  Score=35.74  Aligned_cols=47  Identities=13%  Similarity=0.149  Sum_probs=39.3

Q ss_pred             hhhhhhhhcC-CCCCCHHHHHHHhCcCCC----CCcchHHHHHHHHHcCCceeeec
Q 021707            7 RDGRKKVRLA-NTPLSVSQILTCILPSGG----GDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         7 ~~g~~~~~l~-~~~~t~~eLA~~~~~~~g----~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +..+...+-. ++++|..||++.+    +    ++...+.++|+-|...|+|.+..
T Consensus        11 e~~vL~~L~~~~~~~t~~el~~~l----~~~~~~~~~Tvt~~l~rLe~kGlv~r~~   62 (138)
T 2g9w_A           11 ERAVMDHLWSRTEPQTVRQVHEAL----SARRDLAYTTVMAVLQRLAKKNLVLQIR   62 (138)
T ss_dssp             HHHHHHHHHTCSSCEEHHHHHHHH----TTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHH----hccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence            3444555555 5899999999999    7    78899999999999999999875

>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*

Probab=85.58  E-value=1.2  Score=39.83  Aligned_cols=58  Identities=17%  Similarity=0.078  Sum_probs=46.1

Q ss_pred             hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707            5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus         5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      +-+.-+.+++..+++.|.+|||+.+    ++++..++|-|+.|...|++.+...   ...|++.+
T Consensus         5 ~r~~~Il~~L~~~~~~s~~eLa~~l----~vS~~ti~r~l~~L~~~G~~i~~~~---g~GY~l~~   62 (321)
T 1bia_A            5 TVPLKLIALLANGEFHSGEQLGETL----GMSRAAINKHIQTLRDWGVDVFTVP---GKGYSLPE   62 (321)
T ss_dssp             HHHHHHHHHHTTSSCBCHHHHHHHH----TSCHHHHHHHHHHHHHTTCCCEEET---TTEEECSS
T ss_pred             hHHHHHHHHHHcCCCcCHHHHHHHH----CCCHHHHHHHHHHHHhCCCcEEEec---CCCcEEee
Confidence            3445566766667799999999999    9999999999999999999865431   33687764

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=85.26  E-value=1.3  Score=34.62  Aligned_cols=64  Identities=9%  Similarity=0.056  Sum_probs=45.4

Q ss_pred             hhhhhhhhhhcC-CCCCCHHHHHHHhCcCC-CCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707            5 ECRDGRKKVRLA-NTPLSVSQILTCILPSG-GGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT   68 (309)
Q Consensus         5 ~~~~g~~~~~l~-~~~~t~~eLA~~~~~~~-g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t   68 (309)
                      .-+..+++.+.. +++.|++||.+.+.... +++...+.|.|+.|+..|+|.+...+.+..+|.++
T Consensus        22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   87 (145)
T 2fe3_A           22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFDFV   87 (145)
T ss_dssp             HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence            334556666654 57999999999982221 57788999999999999999887532112357654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=85.19  E-value=2.4  Score=37.73  Aligned_cols=89  Identities=10%  Similarity=0.071  Sum_probs=54.3

Q ss_pred             ceEEEecCCc--cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCC-CCCCCceeeehhhhhcCChhHH
Q 021707          162 KRLVDVGGSA--GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFN-SIPAANAIFMKWVLATWTDDEC  237 (309)
Q Consensus       162 ~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~-~~p~~D~i~~~~vlh~~~d~~~  237 (309)
                      .+|.=||+|.  +.++..+.+.....+ +++.|. ++.++.+.+..-+.-...|..+ ....+|+|++.-     |+...
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~-V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilav-----p~~~~  107 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGK-IYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTF  107 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECS-----CGGGH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeC-----CHHHH
Confidence            5788898772  334555555543336 899998 4455544433222222334433 344569988764     44556


Q ss_pred             HHHHHHHHHhcCCCcEEEE
Q 021707          238 KLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       238 ~~iL~~~~~aL~pgG~l~i  256 (309)
                      .++++++...++|+..++-
T Consensus       108 ~~vl~~l~~~l~~~~iv~d  126 (314)
T 3ggo_A          108 REIAKKLSYILSEDATVTD  126 (314)
T ss_dssp             HHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHhhccCCCcEEEE
Confidence            7889999999998875443

>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}

Probab=85.12  E-value=0.82  Score=34.68  Aligned_cols=48  Identities=17%  Similarity=0.271  Sum_probs=40.8

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ...|.++.+||+.+    ++++..+..||+.|...|.+....    ++.|.++..-
T Consensus        17 ~~~p~~~~~la~~~----~~~~~~~~~~l~~l~~~G~l~~i~----~~~~~~~~~~   64 (121)
T 2pjp_A           17 GDEPWWVRDLAKET----GTDEQAMRLTLRQAAQQGIITAIV----KDRYYRNDRI   64 (121)
T ss_dssp             SSSCEEHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEEE----TTEEEEHHHH
T ss_pred             HhCCCCHHHHHHHh----CCCHHHHHHHHHHHHHCCCEEEec----CCceECHHHH
Confidence            34778999999999    999999999999999999998886    6677766533

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=84.48  E-value=1.1  Score=31.24  Aligned_cols=51  Identities=14%  Similarity=0.126  Sum_probs=43.4

Q ss_pred             hhhhhcC-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707           10 RKKVRLA-NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT   68 (309)
Q Consensus        10 ~~~~~l~-~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t   68 (309)
                      +++.+-. ++|++..|||+.+    |++..-+...|..|-..|.|....    ..+|.++
T Consensus        24 VLe~LkeaG~PlkageIae~~----GvdKKeVdKaik~LKkEgkI~SPk----RCyw~~~   75 (80)
T 2lnb_A           24 ILQVLTEAGSPVKLAQLVKEC----QAPKRELNQVLYRMKKELKVSLTS----PATWCLG   75 (80)
T ss_dssp             HHHHHHHHTSCEEHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEEE----TTEEEES
T ss_pred             HHHHHHHcCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHcCCccCCC----CceeeCC
Confidence            4444432 5799999999999    999999999999999999999886    6788886

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=84.35  E-value=0.63  Score=39.82  Aligned_cols=47  Identities=11%  Similarity=0.106  Sum_probs=42.8

Q ss_pred             cCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           15 LANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        15 l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      +.+++.|.++||+.+    |+++.-+...|.-|...|+|+...    +|+..+.+
T Consensus       174 l~~~~~t~~~la~~~----~l~~~~V~~~l~~L~~~~~v~~~~----~~~~~~~~  220 (232)
T 2qlz_A          174 LLNGRATVEELSDRL----NLKEREVREKISEMARFVPVKIIN----DNTVVLDE  220 (232)
T ss_dssp             HHSSEEEHHHHHHHH----TCCHHHHHHHHHHHTTTSCEEEET----TTEEEECH
T ss_pred             HhcCCCCHHHHHHHh----CcCHHHHHHHHHHHHhcCCeEEec----CCeEEecH
Confidence            568999999999999    999999999999999999998776    78888775

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=84.30  E-value=11  Score=29.20  Aligned_cols=90  Identities=16%  Similarity=0.094  Sum_probs=51.8

Q ss_pred             CcceEEEecCCc-cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-------CCCCceeeehhhhh
Q 021707          160 GVKRLVDVGGSA-GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-------IPAANAIFMKWVLA  230 (309)
Q Consensus       160 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-------~p~~D~i~~~~vlh  230 (309)
                      ...+|+=+|+|. |......+... +.+ ++++|. ++.++.+++..++.++.+|...+       ...+|+++...   
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~-g~~-V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~---   92 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSS-GHS-VVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT---   92 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS---
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhC-CCe-EEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe---
Confidence            356899998863 44444444443 457 899997 55566665334566777776432       12358777653   


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEE
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                        ++.+....+..+.+.+.|..+++.
T Consensus        93 --~~~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           93 --NDDSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             --SCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             --CCcHHHHHHHHHHHHHCCCCeEEE
Confidence              223334445555566666665554

>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17

Probab=84.23  E-value=0.85  Score=31.80  Aligned_cols=37  Identities=11%  Similarity=0.185  Sum_probs=34.7

Q ss_pred             CCCCCHHHHHHHhCcCCCC-CcchHHHHHHHHHcCCceeeec
Q 021707           17 NTPLSVSQILTCILPSGGG-DAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~-~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ++.+++.++|+.+    ++ ..+.+..++-+|.++|++++..
T Consensus        28 ~~~i~l~~aa~~L----~v~~kRRiYDI~NVLe~igli~K~~   65 (76)
T 1cf7_A           28 DGVLDLKLAADTL----AVRQKRRIYDITNVLEGIGLIEKKS   65 (76)
T ss_dssp             TTEEEHHHHHHHT----TTCCTHHHHHHHHHHHHHTSEEEEE
T ss_pred             CCcCcHHHHHHHh----CCccceehhhHHHHHhHhcceeecC
Confidence            5788999999999    99 8999999999999999999985

>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61

Probab=84.03  E-value=0.79  Score=34.57  Aligned_cols=61  Identities=20%  Similarity=0.192  Sum_probs=45.2

Q ss_pred             CCCCCCHHHHHHHhCcCC--C--CCc-chHHHHHHHHHcCCceeeeccc---ccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSG--G--GDA-ENLQCILRLLTSYGVFSEHREF---RGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~--g--~~~-~~l~rlL~~L~~~gll~~~~~~---~~~~~y~~t~~~~~l~~   76 (309)
                      .++|.+.-||++.+....  +  +++ ..+.+.|+-|...|+|+.....   ...-.|++|+.|..+..
T Consensus        23 ~~~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~   91 (118)
T 2esh_A           23 AEKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLR   91 (118)
T ss_dssp             HHSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHH
Confidence            468999999999981100  1  788 9999999999999999876421   01125999999976554

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=83.98  E-value=1.3  Score=41.01  Aligned_cols=38  Identities=16%  Similarity=0.152  Sum_probs=31.1

Q ss_pred             CCcceEEEecCCccHHHHHHH-HhcCC-CceEEEeec-hhHH
Q 021707          159 KGVKRLVDVGGSAGDCLRMIL-QKHHF-ICEGINFDL-PEVV  197 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~-~~~p~-~~~~~~~D~-p~~~  197 (309)
                      .+...|+|||++.|.++..++ +.++. .+ ++.++. |...
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~-V~afEP~p~~~  265 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFER-VWMIEPDRINL  265 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSE-EEEECCCHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCE-EEEEcCCHHHH
Confidence            567899999999999999988 66766 67 999997 4433

>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6

Probab=83.89  E-value=1  Score=32.89  Aligned_cols=36  Identities=31%  Similarity=0.354  Sum_probs=33.0

Q ss_pred             CCC-CHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           18 TPL-SVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        18 ~~~-t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ..+ |..+||+.+    |++...+++-|..|...|++....
T Consensus        33 ~~lps~~eLa~~~----~vSr~tvr~al~~L~~~Gli~~~~   69 (102)
T 1v4r_A           33 DTLPSVADIRAQF----GVAAKTVSRALAVLKSEGLVSSRG   69 (102)
T ss_dssp             SBCCCHHHHHHHS----SSCTTHHHHHTTTTTTSSCCEEET
T ss_pred             CCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEeC
Confidence            345 999999999    999999999999999999998775

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=83.89  E-value=2.5  Score=38.74  Aligned_cols=98  Identities=12%  Similarity=0.069  Sum_probs=63.8

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-CCCceEEeCCCCCC----C-------CCCceeeehhh
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-IPGVTHIGGDMFNS----I-------PAANAIFMKWV  228 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-~~ri~~~~~d~~~~----~-------p~~D~i~~~~v  228 (309)
                      -+++|+-||.|.++..+.+..  .+.+.++|. +..++..+. .+...++++|+.+.    +       +..|+++...-
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpP   80 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPP   80 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCC
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCC
Confidence            379999999999999999885  442468888 444444433 36778888888754    1       23599998776


Q ss_pred             hhcCC-------hhHHHHHHHH---HHHhcCCCcEEEEeccccCC
Q 021707          229 LATWT-------DDECKLIMEN---CYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       229 lh~~~-------d~~~~~iL~~---~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +..|+       ++..-.++..   +.+.++|  ++++.|.+..=
T Consensus        81 CQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P--~~~v~ENV~gl  123 (376)
T 3g7u_A           81 CQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP--LFFLAENVPGI  123 (376)
T ss_dssp             CCTTC-------CHHHHHHHHHHHHHHHHHCC--SEEEEEECTTT
T ss_pred             CCCcccccCCCCCCchHHHHHHHHHHHHHhCC--CEEEEecchHh
Confidence            66554       1122233333   3344566  57888877554

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=83.65  E-value=0.92  Score=39.15  Aligned_cols=49  Identities=14%  Similarity=0.053  Sum_probs=35.8

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP  201 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~  201 (309)
                      ...+++.+  -..+..|||..||+|..+.+..+.  +.+ ++++|+ |..++.++
T Consensus       202 ~~~~i~~~--~~~~~~vlD~f~GsGtt~~~a~~~--gr~-~ig~e~~~~~~~~~~  251 (260)
T 1g60_A          202 IERIIRAS--SNPNDLVLDCFMGSGTTAIVAKKL--GRN-FIGCDMNAEYVNQAN  251 (260)
T ss_dssp             HHHHHHHH--CCTTCEEEESSCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHH
T ss_pred             HHHHHHHh--CCCCCEEEECCCCCCHHHHHHHHc--CCe-EEEEeCCHHHHHHHH
Confidence            44555554  245679999999999999998877  456 999998 55555443

>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A

Probab=83.27  E-value=0.55  Score=35.42  Aligned_cols=46  Identities=9%  Similarity=0.117  Sum_probs=38.3

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCC----CCcchHHHHHHHHHcCCceeeec
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGG----GDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g----~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ..+...+-.++|+|..|||+.+    +    +++..+.++|+-|...|+|.+..
T Consensus        13 ~~vL~~L~~~~~~t~~el~~~l----~~~~~~~~~Tvt~~l~rLe~kGlv~R~~   62 (126)
T 1sd4_A           13 WDVMNIIWDKKSVSANEIVVEI----QKYKEVSDKTIRTLITRLYKKEIIKRYK   62 (126)
T ss_dssp             HHHHHHHHHSSSEEHHHHHHHH----HTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHhcCCCCHHHHHHHH----hhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence            3344445457899999999999    6    57889999999999999999876

>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66

Probab=82.98  E-value=1  Score=33.11  Aligned_cols=37  Identities=30%  Similarity=0.300  Sum_probs=33.4

Q ss_pred             CCCC-CHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           17 NTPL-SVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        17 ~~~~-t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ++.+ |..+||+..    |++...+++-|+.|...|+|+...
T Consensus        40 g~~lps~~eLa~~l----gVSr~tVr~al~~L~~~GlI~~~~   77 (102)
T 2b0l_A           40 NEGLLVASKIADRV----GITRSVIVNALRKLESAGVIESRS   77 (102)
T ss_dssp             TEEEECHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCcCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEEEe
Confidence            3455 999999999    999999999999999999998764

>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1

Probab=82.76  E-value=1.4  Score=36.03  Aligned_cols=54  Identities=17%  Similarity=0.159  Sum_probs=42.6

Q ss_pred             hhhhhhhcCC-CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCc-eeeecccccCceEEcChh
Q 021707            8 DGRKKVRLAN-TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGV-FSEHREFRGERKYSLTEI   70 (309)
Q Consensus         8 ~g~~~~~l~~-~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gl-l~~~~~~~~~~~y~~t~~   70 (309)
                      ..+.+++..+ ++.|..|||+.+    |++.+.++|=++.|...|+ +...     .+.|.+.+.
T Consensus        24 ~~Il~~L~~~~~~~s~~eLa~~l----~vS~~Ti~rdi~~L~~~G~~I~~~-----~~Gy~l~~~   79 (187)
T 1j5y_A           24 KSIVRILERSKEPVSGAQLAEEL----SVSRQVIVQDIAYLRSLGYNIVAT-----PRGYVLAGG   79 (187)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHH----TSCHHHHHHHHHHHHHHTCCCEEE-----TTEEECCTT
T ss_pred             HHHHHHHHHcCCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEEE-----CCEEEECCc
Confidence            3455555433 679999999999    9999999999999999999 7654     356877754

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=82.19  E-value=0.92  Score=41.79  Aligned_cols=45  Identities=9%  Similarity=-0.009  Sum_probs=40.2

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      -+++.+..++++|..|||+.+    |++...+.++++.|...|++.+.+
T Consensus        20 ~il~~l~~~~~~sr~~la~~~----~ls~~tv~~~v~~L~~~g~i~~~~   64 (406)
T 1z6r_A           20 AVYRLIDQLGPVSRIDLSRLA----QLAPASITKIVHEMLEAHLVQELE   64 (406)
T ss_dssp             HHHHHHHSSCSCCHHHHHHHT----TCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred             HHHHHHHHcCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCcEEeec
Confidence            356777788999999999999    999999999999999999998854

>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42

Probab=82.03  E-value=1.8  Score=33.43  Aligned_cols=64  Identities=13%  Similarity=0.159  Sum_probs=45.3

Q ss_pred             hhhhhhhhhhcC-C-CCCCHHHHHHHhCcCC-CCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707            5 ECRDGRKKVRLA-N-TPLSVSQILTCILPSG-GGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT   68 (309)
Q Consensus         5 ~~~~g~~~~~l~-~-~~~t~~eLA~~~~~~~-g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t   68 (309)
                      .-+..+++.+.. + ++.|++||.+.+.... +++..-+.|.|+.|+..|++.+...+.+..+|.++
T Consensus        18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   84 (136)
T 1mzb_A           18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA   84 (136)
T ss_dssp             HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred             HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence            345566776664 3 6899999999982211 57788999999999999999887522112467754

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=81.79  E-value=0.91  Score=37.45  Aligned_cols=36  Identities=19%  Similarity=0.107  Sum_probs=33.3

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .|.|..|||+.+    |++...+.+.|+.|...|++....
T Consensus        23 ~~~s~~eia~~l----gl~~~tv~~~l~~Le~~G~i~~~~   58 (196)
T 3k2z_A           23 YPPSVREIARRF----RITPRGALLHLIALEKKGYIERKN   58 (196)
T ss_dssp             SCCCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEECC-
T ss_pred             CCCCHHHHHHHc----CCCcHHHHHHHHHHHHCCCEEecC
Confidence            489999999999    999889999999999999998874

>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}

Probab=81.53  E-value=1.4  Score=34.26  Aligned_cols=64  Identities=16%  Similarity=0.105  Sum_probs=45.9

Q ss_pred             hhhhhhhhhhcC-CCCCCHHHHHHHhCcCC-CCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707            5 ECRDGRKKVRLA-NTPLSVSQILTCILPSG-GGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT   68 (309)
Q Consensus         5 ~~~~g~~~~~l~-~~~~t~~eLA~~~~~~~-g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t   68 (309)
                      .-+..+++.+.. +++.|++||.+.+.... +++..-+.|.|+.|+..|++.+...+.+..+|...
T Consensus        14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~   79 (139)
T 3mwm_A           14 RQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC   79 (139)
T ss_dssp             HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence            345567776665 46999999999882111 57788999999999999999887532123467665

>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}

Probab=81.31  E-value=1.7  Score=33.27  Aligned_cols=62  Identities=15%  Similarity=0.100  Sum_probs=44.4

Q ss_pred             hhhhhhhhhcC-CCCCCHHHHHHHhCcCC-CCCcchHHHHHHHHHcCCceeeecccccCceEEc
Q 021707            6 CRDGRKKVRLA-NTPLSVSQILTCILPSG-GGDAENLQCILRLLTSYGVFSEHREFRGERKYSL   67 (309)
Q Consensus         6 ~~~g~~~~~l~-~~~~t~~eLA~~~~~~~-g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~   67 (309)
                      -+..+++.+.. +++.|++||.+.+.... +++...+.|.|+.|+..|++.+...+.+..+|..
T Consensus        12 qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~   75 (131)
T 2o03_A           12 QRAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYRR   75 (131)
T ss_dssp             HHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence            34556666653 56999999999982211 6778899999999999999988753211235654

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=80.65  E-value=5  Score=34.68  Aligned_cols=88  Identities=11%  Similarity=-0.050  Sum_probs=50.7

Q ss_pred             ceEEEecCCc--cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHH
Q 021707          162 KRLVDVGGSA--GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECK  238 (309)
Q Consensus       162 ~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~  238 (309)
                      .+|.=||+|.  +.++..+.+..++.+ +++.|. ++..+.+.+...+.....|..+....+|+|++.-     ++....
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilav-----p~~~~~   80 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYK-IVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAV-----PIKKTI   80 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECS-----CHHHHH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcC-----CHHHHH
Confidence            4688888874  334445555544567 899997 4444433222111122234433344569988765     444456


Q ss_pred             HHHHHHHHh-cCCCcEEE
Q 021707          239 LIMENCYKA-LLAGGKLI  255 (309)
Q Consensus       239 ~iL~~~~~a-L~pgG~l~  255 (309)
                      .+++++... ++|+..++
T Consensus        81 ~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           81 DFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             HHHHHHHTSCCCTTCEEE
T ss_pred             HHHHHHHhcCCCCCCEEE
Confidence            788888887 88775444

>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}

Probab=80.59  E-value=0.82  Score=34.57  Aligned_cols=61  Identities=11%  Similarity=0.246  Sum_probs=44.9

Q ss_pred             CCCCCCHHHHHHHhCcC--CCCCcchHHHHHHHHHcCCceeeecc--cc--cCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPS--GGGDAENLQCILRLLTSYGVFSEHRE--FR--GERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~--~g~~~~~l~rlL~~L~~~gll~~~~~--~~--~~~~y~~t~~~~~l~~   76 (309)
                      .++|.+.-||++.+...  ..+++..+...|+-|...|+|+....  +.  ..-.|++|+.|+..+.
T Consensus        24 ~~~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~   90 (117)
T 3elk_A           24 VKRPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLC   90 (117)
T ss_dssp             HHSCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHH
Confidence            46899999999998100  02788999999999999999986542  10  1126999999976554

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=80.57  E-value=1.1  Score=41.00  Aligned_cols=59  Identities=14%  Similarity=0.211  Sum_probs=46.4

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc-----ccCceEEcChhch
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF-----RGERKYSLTEIGK   72 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~-----~~~~~y~~t~~~~   72 (309)
                      -+++.+. ++++|..|||+.+    |+++..+.++++.|...|++.+.+..     +..-.|++++...
T Consensus        24 ~il~~l~-~~~~sr~~la~~~----gls~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~~l~~~~~~~   87 (380)
T 2hoe_A           24 RILKRIM-KSPVSRVELAEEL----GLTKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTKSLKISPNCA   87 (380)
T ss_dssp             CSHHHHH-HSCBCHHHHHHHH----TCCHHHHHHHHHHHHHHTSEEEEECCC----CCCEEEEECGGGC
T ss_pred             HHHHHHH-cCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeecCCCCCCCCCceEEEEccCCC
Confidence            3567777 8999999999999    99999999999999999999886521     1122366666543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=80.52  E-value=4.4  Score=37.57  Aligned_cols=88  Identities=17%  Similarity=0.168  Sum_probs=54.7

Q ss_pred             ceEEEecCCc-cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-------CCCCceeeehhhhhcC
Q 021707          162 KRLVDVGGSA-GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-------IPAANAIFMKWVLATW  232 (309)
Q Consensus       162 ~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-------~p~~D~i~~~~vlh~~  232 (309)
                      .+|+=||+|. |......+... +.. ++++|. ++.++.+++ ..+.++.||..++       +..+|++++..     
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~-g~~-vvvId~d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~-----   76 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSS-GVK-MVVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAI-----   76 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT-TCC-EEEEECCHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECC-----
T ss_pred             CeEEEECCCHHHHHHHHHHHHC-CCC-EEEEECCHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECC-----
Confidence            5788888763 44434444332 567 999998 666666653 4577888998764       23367776544     


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          233 TDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ++++.-..+....+.+.|+.+++..
T Consensus        77 ~~~~~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           77 DDPQTNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             SSHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CChHHHHHHHHHHHHhCCCCeEEEE
Confidence            3333334444556667888777764

>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1

Probab=80.48  E-value=1.2  Score=41.79  Aligned_cols=55  Identities=18%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +++|..|||+.+    ++++..+.|+++-|...|+|.+...  |+..-...+|+.++.+..
T Consensus       419 ~~~~~~~l~~~~----~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~  475 (487)
T 1hsj_A          419 NEISSKEIAKCS----EFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQ  475 (487)
T ss_dssp             SEEEHHHHHHSS----CCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHH
T ss_pred             CCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHH
Confidence            789999999999    9999999999999999999988652  222346888888866554

>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85

Probab=80.37  E-value=1.3  Score=31.91  Aligned_cols=37  Identities=14%  Similarity=0.054  Sum_probs=34.1

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +..++..|||+++    +++...+.++|+.|...|+|.+..
T Consensus        34 ~~gi~qkeLa~~~----~l~~~tvt~iLk~LE~kglIkr~~   70 (91)
T 2dk5_A           34 NKGIWSRDVRYKS----NLPLTEINKILKNLESKKLIKAVK   70 (91)
T ss_dssp             TTCEEHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             CCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEec
Confidence            4589999999999    999999999999999999999554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=80.21  E-value=9.1  Score=30.44  Aligned_cols=90  Identities=12%  Similarity=0.118  Sum_probs=49.9

Q ss_pred             cceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC--------CCCCceeeehhhhh
Q 021707          161 VKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS--------IPAANAIFMKWVLA  230 (309)
Q Consensus       161 ~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~--------~p~~D~i~~~~vlh  230 (309)
                      ..+|+=+|+| .|......+.+..+.+ ++++|. ++.++.+++ ..+..+.+|..+.        ...+|+++...-  
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~-V~vid~~~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~--  114 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKI-SLGIEIREEAAQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLLAMP--  114 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSC-EEEEESCHHHHHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS--
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCe-EEEEECCHHHHHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC--
Confidence            4578888876 2433333333321456 899997 444444432 3567777887542        223587776421  


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                        ++.....++ ...+.+.|+.+++..
T Consensus       115 --~~~~~~~~~-~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          115 --HHQGNQTAL-EQLQRRNYKGQIAAI  138 (183)
T ss_dssp             --SHHHHHHHH-HHHHHTTCCSEEEEE
T ss_pred             --ChHHHHHHH-HHHHHHCCCCEEEEE
Confidence              233333333 455567788877763

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=80.14  E-value=1.9  Score=38.91  Aligned_cols=99  Identities=12%  Similarity=-0.015  Sum_probs=59.2

Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCCC----C--CCceeeehhhhhcCC
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNSI----P--AANAIFMKWVLATWT  233 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~~----p--~~D~i~~~~vlh~~~  233 (309)
                      .+|+|+-||.|.+...+.+..-..+.+.++|. +..++..+.+ +...++.+|+.+..    +  ..|+++...-+..|+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq~fS   82 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFT   82 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC-----
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcCCCcchh
Confidence            57999999999999999988533333688888 5555544433 45667888887642    2  359999877665554


Q ss_pred             hh--------HHHHHHHHHH---HhcC--CCcEEEEeccccC
Q 021707          234 DD--------ECKLIMENCY---KALL--AGGKLIACEPVLL  262 (309)
Q Consensus       234 d~--------~~~~iL~~~~---~aL~--pgG~l~i~e~~~~  262 (309)
                      ..        ..-.++.++.   +.++  |  ++++.|.+..
T Consensus        83 ~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P--~~~~~ENV~~  122 (343)
T 1g55_A           83 RIGRQGDMTDSRTNSFLHILDILPRLQKLP--KYILLENVKG  122 (343)
T ss_dssp             -------------CHHHHHHHHGGGCSSCC--SEEEEEEETT
T ss_pred             hcCCcCCccCccchHHHHHHHHHHHhcCCC--CEEEEeCCcc
Confidence            21        1112444333   3444  5  4666676654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	309
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	7e-50
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	2e-47
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	2e-42
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	2e-16
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	2e-15
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	2e-08
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	6e-08
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	1e-07
d1tw3a1	85	a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer	7e-05
d1qzza1	92	a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R	2e-04

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  163 bits (414), Expect = 7e-50
 Identities = 73/205 (35%), Positives = 115/205 (56%), Gaps = 1/205 (0%)

Query: 84  APYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGV 143
           A +       A +  W    EAV+D  I+ F  VHG   Y + GK  +MN +  +++  V
Sbjct: 5   ASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDV 64

Query: 144 SVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSI 203
               M  +L+ Y GF+G+  LVDVGG +G  L +I+ K+  I  GINFDLP+V+  AP +
Sbjct: 65  CATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIK-GINFDLPQVIENAPPL 123

Query: 204 PGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD 263
            G+ H+GGDMF S+P  +A+ +K V   W+D++C   + NC+KAL   GK+I  E +L +
Sbjct: 124 SGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE 183

Query: 264 DSNESQRTRALLEGDIFVMTIYRAK 288
           + N S+ ++ +   D  +      +
Sbjct: 184 EPNTSEESKLVSTLDNLMFITVGGR 208

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  157 bits (398), Expect = 2e-47
 Identities = 56/207 (27%), Positives = 99/207 (47%), Gaps = 4/207 (1%)

Query: 81  LSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAI 140
           L  AP V          ++  + + + +  +  F    G   + +  K PE N     A+
Sbjct: 1   LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAM 60

Query: 141 SGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEA 200
           +  S     ++ D    F G++ +VDVGG  G   ++I +    +   I FD P+VV   
Sbjct: 61  ASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLK-CIVFDRPQVVENL 119

Query: 201 PSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKAL---LAGGKLIAC 257
                +T++GGDMF SIP A+A+ +K++L  WTD +C  I++ C +A+      GK+   
Sbjct: 120 SGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII 179

Query: 258 EPVLLDDSNESQRTRALLEGDIFVMTI 284
           + V+    +E+Q T+  L  D+ +  +
Sbjct: 180 DMVIDKKKDENQVTQIKLLMDVNMACL 206

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  144 bits (363), Expect = 2e-42
 Identities = 83/205 (40%), Positives = 124/205 (60%), Gaps = 2/205 (0%)

Query: 80  GLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRA 139
           G+S +   L +     M +W  + +AVLD  I PF K +G  A+ Y+G  P  N +  + 
Sbjct: 2   GVSISALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKG 60

Query: 140 ISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGE 199
           +S  S   M  +L++Y GF+G+K LVDVGG  G  +  I+ K+  I +GINFDLP V+ +
Sbjct: 61  MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDLPHVIED 119

Query: 200 APSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP 259
           APS PGV H+GGDMF SIP A+A+FMKW+   W+D+ C   ++NCY+AL   GK+I  E 
Sbjct: 120 APSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC 179

Query: 260 VLLDDSNESQRTRALLEGDIFVMTI 284
           +L    + S  T+ ++  D+ ++  
Sbjct: 180 ILPVAPDSSLATKGVVHIDVIMLAH 204

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 75.4 bits (184), Expect = 2e-16
 Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 13/209 (6%)

Query: 88  LQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPF 147
           L         A+  + + V       +   +G P +        +       +S      
Sbjct: 11  LNGAVSHADLAFTGLLDVVRTGRP-AYAGRYGRPFWEDLSADVALADSFDALMSCDEDLA 69

Query: 148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEA------- 200
             +  D+Y+ +  V+ ++DVGG  G  L  I  +   +  G   +L      A       
Sbjct: 70  YEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVELAGPAERARRRFADA 127

Query: 201 -PSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP 259
             +       G         A+ + + +VL  W+D++   I+  C +AL  GG+L+  + 
Sbjct: 128 GLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187

Query: 260 VLLDDSNESQRTRALLEGDIFVMTIYRAK 288
             ++     +    LL  D+ ++T    +
Sbjct: 188 ADVEGDGADRFFSTLL--DLRMLTFMGGR 214

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 72.8 bits (177), Expect = 2e-15
 Identities = 34/199 (17%), Positives = 77/199 (38%), Gaps = 14/199 (7%)

Query: 98  AWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNG 157
           ++  + +A+       +  ++G+P Y      P++       ++        +   +Y+ 
Sbjct: 20  SFTRLPDAIRTGRP-TYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD- 77

Query: 158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS--------IPGVTHI 209
           +  V+ ++DVGG  G     I ++   +      ++   V  A S               
Sbjct: 78  WTNVRHVLDVGGGKGGFAAAIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVE 136

Query: 210 GGDMFNSIPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQ 269
           G         A+AI + +VL  W D +   I+  C +AL  GG+++  E   L +++ ++
Sbjct: 137 GDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNE 196

Query: 270 RTRALLEGDIFVMTIYRAK 288
           +   L   D+ ++      
Sbjct: 197 QFTEL---DLRMLVFLGGA 212

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 17  NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE----FRGERKYSLTEIGK 72
              +S  +I + +  +       L  +LRLL  Y + +         + +R Y L  + K
Sbjct: 42  GAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAK 101

Query: 73  SLVTD 77
            LV +
Sbjct: 102 YLVKN 106

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 16  ANTPLSVSQILTCI--LPSGGGDAENLQCILRLLTSYGVFSEHRE----FRGERKYSLTE 69
               +S S+I + +            L  +LRLL SY V +           ER Y L+ 
Sbjct: 41  PGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSM 100

Query: 70  IGKSLVTD 77
           +GK LV D
Sbjct: 101 VGKYLVPD 108

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 15  LANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSL 74
               P+S+S  L  IL        N++ ++R L   G F      + E  Y+LT   + L
Sbjct: 40  NHGKPISLSN-LVSILQVPSSKIGNVRRLMRYLAHNGFFEII--TKEEESYALTVASELL 96

Query: 75  VTDAE 79
           V  ++
Sbjct: 97  VRGSD 101

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 38.6 bits (90), Expect = 7e-05
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 15 LANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSL 74
          +     +V  +            E L  ++R L + G+  E        ++  TE+G+ L
Sbjct: 30 ILAGARTVKALAART----DTRPEALLRLIRHLVAIGLLEED----APGEFVPTEVGELL 81

Query: 75 VTD 77
            D
Sbjct: 82 ADD 84

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 6/62 (9%)

Query: 14 RLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKS 73
           L     +++ +            + L  ++R LT  GV     +         T +G  
Sbjct: 35 HLLAGADTLAGLADRT----DTHPQALSRLVRHLTVVGVLEGGEKQGRP--LRPTRLGML 88

Query: 74 LV 75
          L 
Sbjct: 89 LA 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	309
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	100.0
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	100.0
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	100.0
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.66
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.61
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.61
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.59
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.58
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.57
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.55
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.54
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.52
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.51
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.47
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.46
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.43
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.41
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.38
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.37
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.37
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.37
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.32
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.31
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.29
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.28
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.26
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.26
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.24
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.21
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.19
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.18
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.17
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.16
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.15
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.14
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.14
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.13
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.11
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.1
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.1
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.05
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.0
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.98
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.96
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.92
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.91
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.9
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.86
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.85
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.84
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.83
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.8
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.79
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.76
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.72
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.71
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.69
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.65
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.46
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.43
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.29
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.26
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.2
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.19
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.16
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.1
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.04
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.97
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.94
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.94
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.93
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.92
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.89
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.86
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.85
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.82
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.81
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.8
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.78
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.77
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.7
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.7
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.63
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.58
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.55
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.55
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.52
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.46
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	97.43
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	97.28
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	97.1
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.07
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.82
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.65
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	96.61
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.57
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	96.29
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	96.17
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	96.13
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	96.06
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.0
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	95.96
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	95.78
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	95.68
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	95.65
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	95.52
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	95.19
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	95.13
d1ylfa1	138	Hypothetical protein BC1842 {Bacillus cereus [TaxI	95.01
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	94.95
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	94.59
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.43
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	94.32
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	94.21
d2isya1	63	Iron-dependent regulator IdeR {Mycobacterium tuber	94.2
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	94.16
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	94.08
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	93.77
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	93.64
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	93.6
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	93.39
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	93.25
d2ev0a1	61	Manganese transport regulator MntR {Bacillus subti	93.13
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	92.82
d2hr3a1	145	Probable transcriptional regulator PA3067 {Pseudom	92.81
d2etha1	140	Putative transcriptional regulator TM0816 {Thermot	92.69
d3broa1	135	Transcriptional regulator OEOE1854 {Oenococcus oen	92.47
d1lnwa_	141	MexR repressor {Pseudomonas aeruginosa [TaxId: 287	92.4
d2hzta1	95	Putative transcriptional regulator YtcD {Bacillus	92.4
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	92.32
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.32
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	92.25
d2a61a1	139	Transcriptional regulator TM0710 {Thermotoga marit	91.8
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	91.71
d2bv6a1	136	Transcriptional regulator MgrA {Staphylococcus aur	91.68
d1ku9a_	151	DNA-binding protein Mj223 {Archaeon Methanococcus	90.94
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	90.83
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	90.76
d1s3ja_	143	Putative transcriptional regulator YusO {Bacillus	90.74
d1jgsa_	138	Multiple antibiotic resistance repressor, MarR {Es	90.65
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.5
d2obpa1	81	Putative DNA-binding protein ReutB4095 {Ralstonia	90.47
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	89.97
d2fbha1	137	Transcriptional regulator PA3341 {Pseudomonas aeru	89.9
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	89.73
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	89.72
d2fswa1	102	Hypothetical protein PG0823 {Porphyromonas gingiva	89.66
d1zyba1	73	Probable transcription regulator BT4300, C-termina	89.61
d3deua1	140	Transcriptional regulator SlyA {Salmonella typhimu	89.42
d2f2ea1	142	Hypothetical protein PA1607 {Pseudomonas aeruginos	89.4
d1hsja1	115	Staphylococcal accessory regulator A homolog, SarR	89.4
d2p8ta1	69	Hypothetical protein PH0730 {Pyrococcus horikoshii	89.37
d1lj9a_	144	Transcriptional regulator SlyA {Enterococcus faeca	89.36
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	89.17
d2frha1	115	Pleiotropic regulator of virulence genes, SarA {St	89.02
d1yyva1	114	Putative transcriptional regulator YtfH {Salmonell	88.8
d2gxba1	59	Z-alpha domain of dsRNA-specific adenosine deamina	88.69
d1p4xa1	125	Staphylococcal accessory regulator A homolog, SarS	88.67
d1bl0a1	54	MarA {Escherichia coli [TaxId: 562]}	88.2
d1z91a1	137	Organic hydroperoxide resistance transcriptional r	87.99
d1p4xa2	125	Staphylococcal accessory regulator A homolog, SarS	87.88
d2fbia1	136	Probable transcriptional regulator PA4135 {Pseudom	87.69
d1i5za1	69	Catabolite gene activator protein (CAP), C-termina	87.05
d2gaua1	81	Transcriptional regulator PG0396, C-terminal domai	87.05
d2zcwa1	82	Transcriptional regulator TTHA1359, C-terminal dom	86.74
d1z7ua1	108	Hypothetical protein EF0647 {Enterococcus faecalis	86.66
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	86.27
d1stza1	87	Heat-inducible transcription repressor HrcA, N-ter	86.15
d1ft9a1	80	CO-sensing protein CooA, C-terminal domain {Rhodos	85.74
d2fxaa1	162	Protease production regulatory protein Hpr {Bacill	85.55
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	85.17
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	85.04
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	84.93
d2hs5a1	69	Putative transcriptional regulator RHA1_ro03477 {R	84.92
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	84.62
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	84.19
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	83.7
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	83.54
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	83.16
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	82.69
d3bwga1	78	Transcriptional regulator YydK {Bacillus subtilis	82.27
d3e5ua1	80	Chlorophenol reduction protein CprK {Desulfitobact	82.03
d1hw1a1	74	Fatty acid responsive transcription factor FadR, N	81.7
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	81.09
d1q1ha_	88	Transcription factor E/IIe-alpha, N-terminal domai	80.91
d2fbka1	172	Transcriptional regulator DR1159 {Deinococcus radi	80.9
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	80.24

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=9.9e-43  Score=305.98  Aligned_cols=210  Identities=35%  Similarity=0.646  Sum_probs=180.7

Q ss_pred             ChHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCCc
Q 021707           82 SYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGV  161 (309)
Q Consensus        82 ~~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~  161 (309)
                      ++++++.+++.|.++.+|.+|.++++++.+++|+.+||.++|+|+.++|+..+.|+++|...+....+.+++.++.|++.
T Consensus         3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~   82 (244)
T d1fp1d2           3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGI   82 (244)
T ss_dssp             CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTC
T ss_pred             cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence            67888988888999999999999999987788999999999999999999999999999998888888899999757888


Q ss_pred             ceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHHHH
Q 021707          162 KRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLIM  241 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~iL  241 (309)
                      .+|||||||+|.++.+++++||+++ ++++|+|++++.+...+||+++++|+++++|.+|+|+++++||+|+|++++++|
T Consensus        83 ~~vlDiGGG~G~~~~~l~~~~P~l~-~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL  161 (244)
T d1fp1d2          83 STLVDVGGGSGRNLELIISKYPLIK-GINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL  161 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHH
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCe-EEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHH
Confidence            9999999999999999999999999 999999999999998999999999999999988999999999999999999999


Q ss_pred             HHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          242 ENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       242 ~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      ++++++|+|||+|+|.|.++|+++...+.......+|++||+  +.+|++||.
T Consensus       162 ~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~--~~~g~ert~  212 (244)
T d1fp1d2         162 SNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI--TVGGRERTE  212 (244)
T ss_dssp             HHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH--HHSCCCEEH
T ss_pred             HHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHh--hCCCcCCCH
Confidence            999999999999999999999877533334456789999998  578999984

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=9.4e-41  Score=293.62  Aligned_cols=213  Identities=38%  Similarity=0.713  Sum_probs=192.6

Q ss_pred             CCChHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCC
Q 021707           80 GLSYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFK  159 (309)
Q Consensus        80 ~~~~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~  159 (309)
                      +.|+++++.+++++.+++.|.+|++++|+|+ ++|+.+||.++|+|+.++|+..+.|.++|...+....+.+++.++.++
T Consensus         2 ~~s~~~~~~~~~~~~~~~~W~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~   80 (243)
T d1kyza2           2 GVSISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFE   80 (243)
T ss_dssp             SCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             CCcHHHHHHHhcCHHHHHHHHHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccccc
Confidence            4689999988888889999999999999998 799999999999999999999999999999888777888999987335


Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHH
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKL  239 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~  239 (309)
                      +..+|||||||+|.++.+++++||+++ ++++|+|++++.++..+|++++.+|+++++|.+|+|++++++|+|+++++++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~  159 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIK-GINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLK  159 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSE-EEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHH
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCe-EEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHH
Confidence            578999999999999999999999999 9999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCccccee
Q 021707          240 IMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYF  295 (309)
Q Consensus       240 iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~~  295 (309)
                      +|++++++|+|||+++|.|.+.++++...........+|++||++ +.+|++||..
T Consensus       160 iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~-~~~g~ert~~  214 (243)
T d1kyza2         160 FLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAH-NPGGKERTQK  214 (243)
T ss_dssp             HHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHH-CSSCCCEEHH
T ss_pred             HHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhh-CCCCCcCCHH
Confidence            999999999999999999999987664332333456799999984 5789999854

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=6.9e-40  Score=287.87  Aligned_cols=208  Identities=26%  Similarity=0.444  Sum_probs=185.4

Q ss_pred             ChHHHHHHhcchhhhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhh-cCCCCC
Q 021707           82 SYAPYVLQHHQDAFMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDS-YNGFKG  160 (309)
Q Consensus        82 ~~~~~i~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~-~~~~~~  160 (309)
                      ++..++.++.++.++..|..|+++++++.+++|+.++|.++|+|++++|+..+.|+++|...+......+.+. ++ |++
T Consensus         2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~-~~~   80 (244)
T d1fp2a2           2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV-FDG   80 (244)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHH-HTT
T ss_pred             ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhccc-ccC
Confidence            5678888888898999999999999998778999999999999999999999999999998877655555543 33 677


Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHHH
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKLI  240 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~i  240 (309)
                      ..+|||||||+|.++.+++++||+++ ++++|+|++++.+...+||++++||+++++|.+|+|+++++||+|+|++|+++
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~i  159 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLK-CIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRI  159 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHH
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCe-EEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHH
Confidence            88999999999999999999999999 99999999999999899999999999999988999999999999999999999


Q ss_pred             HHHHHHhcCCC---cEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCcccce
Q 021707          241 MENCYKALLAG---GKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFY  294 (309)
Q Consensus       241 L~~~~~aL~pg---G~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~  294 (309)
                      |++++++|+||   |+++|+|.++++++...........+|++|++   .+|++||.
T Consensus       160 L~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~---~~G~ert~  213 (244)
T d1fp2a2         160 LKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC---LNGKERNE  213 (244)
T ss_dssp             HHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG---GTCCCEEH
T ss_pred             HHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh---CCCcCCCH
Confidence            99999999998   89999999999887543333345678999987   36999985

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=100.00  E-value=3.1e-37  Score=273.13  Aligned_cols=210  Identities=18%  Similarity=0.266  Sum_probs=180.1

Q ss_pred             CCCChHHHHHHhcchh-hhhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCC
Q 021707           79 EGLSYAPYVLQHHQDA-FMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNG  157 (309)
Q Consensus        79 ~~~~~~~~i~~~~~~~-~~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~  157 (309)
                      +|.++++++.+..... ...+|.+|.+++|+|. ++|+..+|.++|+|+.++|+..+.|+++|...+...++.+++.+| 
T Consensus         1 hp~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-   78 (256)
T d1qzza2           1 HPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-   78 (256)
T ss_dssp             CTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-
T ss_pred             CcHHHHHHHhhcCchhhhHhhHHHHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-
Confidence            4678888876543322 2347999999999998 789999999999999999999999999999998888899999997 


Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCCCCC-Cceeeehhhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNSIPA-ANAIFMKWVL  229 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~~p~-~D~i~~~~vl  229 (309)
                      |++..+|||||||+|.++..++++||+++ ++++|+|++++.+++       .+|++++.+|+++++|. +|+|+++++|
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~~~-~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vL  157 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRAPHLR-GTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVL  157 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCG
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhhcCcE-EEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccc
Confidence            99999999999999999999999999999 999999988877653       38999999999998876 5999999999


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCccccee
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYF  295 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~~  295 (309)
                      |+|+++++.++|++++++|+|||+++|+|.+.+++....  ......+|++||+  ..+|++||..
T Consensus       158 h~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~--~~~~~~~d~~ml~--~~~g~~rt~~  219 (256)
T d1qzza2         158 LNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD--RFFSTLLDLRMLT--FMGGRVRTRD  219 (256)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHH--HHSCCCCCHH
T ss_pred             cccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCccc--HHHHHHHHHHHHh--hCCCccCCHH
Confidence            999999999999999999999999999999877654322  2356789999999  4689999754

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=100.00  E-value=3.3e-35  Score=259.46  Aligned_cols=192  Identities=20%  Similarity=0.358  Sum_probs=172.3

Q ss_pred             hhhhhhHHHHhcCCCCChhhhhhCCChhhhhhcCchHHHHHHHHhhcCCcccHHHHHhhcCCCCCcceEEEecCCccHHH
Q 021707           96 MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRRAISGVSVPFMTSVLDSYNGFKGVKRLVDVGGSAGDCL  175 (309)
Q Consensus        96 ~~~~~~L~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~  175 (309)
                      ..+|.+|++++|+|+ ++|+.++|.++|+|+.++|+..+.|.++|...+....+.+++.++ |++..+|||||||+|.++
T Consensus        18 ~~~~~~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~   95 (253)
T d1tw3a2          18 DISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFA   95 (253)
T ss_dssp             GGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHH
T ss_pred             cccHHHHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHH
Confidence            357999999999998 789999999999999999999999999999988888899999998 999999999999999999


Q ss_pred             HHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCCCCC-CceeeehhhhhcCChhHHHHHHHHHHHh
Q 021707          176 RMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNSIPA-ANAIFMKWVLATWTDDECKLIMENCYKA  247 (309)
Q Consensus       176 ~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~~p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~a  247 (309)
                      ..+++++|+++ ++++|+|++++.+++       .+||+++++|++++.|. +|+|+++++||+|+++++.++|++++++
T Consensus        96 ~~la~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~  174 (253)
T d1tw3a2          96 AAIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEA  174 (253)
T ss_dssp             HHHHHHCTTCE-EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHT
T ss_pred             HHHHHhcceeE-EEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHh
Confidence            99999999999 999999988877754       27999999999988776 5999999999999999999999999999


Q ss_pred             cCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhcccccCCccccee
Q 021707          248 LLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMTIYRAKDDNSFYF  295 (309)
Q Consensus       248 L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~~~g~~rt~~  295 (309)
                      |+|||+|+|.|...++++...   .....+|+.||+  ..+|++||..
T Consensus       175 LkPGG~l~i~e~~~~~~~~~~---~~~~~~dl~~~~--~~~g~~rt~~  217 (253)
T d1tw3a2         175 LEPGGRILIHERDDLHENSFN---EQFTELDLRMLV--FLGGALRTRE  217 (253)
T ss_dssp             EEEEEEEEEEECCBCGGGCCS---HHHHHHHHHHHH--HHSCCCCBHH
T ss_pred             cCCCcEEEEEeccCCCCCcch---hHHHHhhHHHHh--hCCCcCCCHH
Confidence            999999999998877664422   235678999999  5689998753

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=1e-16  Score=137.29  Aligned_cols=107  Identities=17%  Similarity=0.227  Sum_probs=92.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHh--cCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-CCCCceeeeh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQK--HHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-IPAANAIFMK  226 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~p~~D~i~~~  226 (309)
                      .+...+|||||||+|..+..+++.  .|+.+ ++++|+ +.|++.|++       ..++++..+|+.+. .+..|++++.
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~-v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~  115 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN  115 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCE-EEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCc-eEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEe
Confidence            355679999999999999999986  47889 999999 789888864       25788888888654 3345999999


Q ss_pred             hhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          227 WVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      +++|+++.++..++|++++++|+|||++++.|...++++
T Consensus       116 ~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~  154 (225)
T d1im8a_         116 FTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDT  154 (225)
T ss_dssp             SCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSH
T ss_pred             eeccccChhhHHHHHHHHHHhCCCCceeecccccccccc
Confidence            999999988888999999999999999999999988764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.61  E-value=2.7e-16  Score=139.13  Aligned_cols=114  Identities=13%  Similarity=0.191  Sum_probs=95.1

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC-C
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS-I  217 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~-~  217 (309)
                      +...+....+ +++..+|||||||+|.++..+++++ +.+ ++++|+ +.+++.+++.       ++++++++|+.+. +
T Consensus        55 ~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~  131 (282)
T d2o57a1          55 LASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC  131 (282)
T ss_dssp             HHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred             HHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcE-EEEEeccchhhhhhhcccccccccccccccccccccccc
Confidence            3455555554 7888999999999999999999886 678 999998 6777776642       6899999999774 4


Q ss_pred             CC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          218 PA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       218 p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      |.  .|+|++..++|++++.  .++|++++++|+|||++++.+....+..
T Consensus       132 ~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~  179 (282)
T d2o57a1         132 EDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGI  179 (282)
T ss_dssp             CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTC
T ss_pred             cccccchhhccchhhhccCH--HHHHHHHHHhcCCCcEEEEEEeecCCCC
Confidence            54  3999999999999876  4899999999999999999998877654

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.61  E-value=4.5e-16  Score=133.12  Aligned_cols=110  Identities=15%  Similarity=0.274  Sum_probs=92.6

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC-CCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS-IPA-  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~-~p~-  219 (309)
                      ..+++..+ +.+..+|||||||+|.++..++++.+  + ++++|+ +.+++.|++      .++++++.+|+.+. +|. 
T Consensus         5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~   80 (231)
T d1vl5a_           5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--K-VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE   80 (231)
T ss_dssp             HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--E-EEEEECCHHHHhhhhhccccccccccccccccccccccccc
Confidence            45677775 88889999999999999999998864  5 999998 778877653      38899999999764 454 


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                       .|+|++.+++|+++|.+  ++|++++++|+|||+++|.+...++.
T Consensus        81 ~fD~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~  124 (231)
T d1vl5a_          81 RFHIVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPEN  124 (231)
T ss_dssp             CEEEEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSS
T ss_pred             ccccccccccccccCCHH--HHHHHHHHhcCCCcEEEEEeCCCCCC
Confidence             39999999999998874  88999999999999999999887765

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=9.2e-16  Score=132.87  Aligned_cols=113  Identities=18%  Similarity=0.158  Sum_probs=95.2

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~  219 (309)
                      ...+.+.+. +..+.+|||||||+|.++..++++++ .+ ++++|+ +.+++.+++       .+||+++.+|+.+..+.
T Consensus        22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~-v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~   98 (245)
T d1nkva_          22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-IT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN   98 (245)
T ss_dssp             HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS
T ss_pred             HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CE-EEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc
Confidence            345677775 88889999999999999999998875 78 999999 677776654       26899999999876544


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                        .|+|++..++|++++.  .++|++++++|+|||++++.++.....+
T Consensus        99 ~~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~~~~~  144 (245)
T d1nkva_          99 EKCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLP  144 (245)
T ss_dssp             SCEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCC
T ss_pred             CceeEEEEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccccCCC
Confidence              4999999999999876  4899999999999999999998766654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.58  E-value=1.1e-15  Score=131.28  Aligned_cols=110  Identities=17%  Similarity=0.258  Sum_probs=93.3

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC-
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA-  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~-  219 (309)
                      +-+++..+ ++.+.+|||||||+|.++..++++++  + ++++|+ +.+++.|+++      +++.++++|+.+. +|. 
T Consensus         6 ~~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~-v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~   81 (234)
T d1xxla_           6 GLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--E-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   81 (234)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             HHHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--e-EEEEeCChhhhhhhhhhhccccccccccccccccccccccc
Confidence            34667776 88899999999999999999998864  5 999998 6788777642      7899999999763 454 


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                       .|+|++.+++|++++.  .++|++++++|+|||++++.+...++.
T Consensus        82 ~fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~~~~~~~~~~~~  125 (234)
T d1xxla_          82 SFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPED  125 (234)
T ss_dssp             CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSS
T ss_pred             ccceeeeeceeecccCH--HHHHHHHHHeeCCCcEEEEEEcCCCCC
Confidence             3999999999999876  589999999999999999998877654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.57  E-value=1.4e-15  Score=132.86  Aligned_cols=113  Identities=21%  Similarity=0.299  Sum_probs=93.3

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC--C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA--A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~--~  220 (309)
                      ..+++.++ ..+..+|||||||+|.++..++..+++ + ++++|. +.+++.|++    .++++++++|+.+. ++.  .
T Consensus        83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~-v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T d1xtpa_          83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-T-TDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-E-EEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-e-EEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence            44666664 566789999999999999999988765 5 899998 778887764    36689999998664 333  3


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      |+|++.+++|++++++..++|++++++|+|||+++|.|.+...+
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~  203 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD  203 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--C
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCC
Confidence            99999999999999999999999999999999999999876644

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=5.2e-15  Score=125.51  Aligned_cols=106  Identities=15%  Similarity=0.189  Sum_probs=87.5

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCC-CCC--C
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNS-IPA--A  220 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~-~p~--~  220 (309)
                      .++..+  ..+..+|||||||+|.++..+++.  +.+ ++++|+ +.+++.+++     ..++.++.+|+.+. ++.  .
T Consensus        29 ~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~-v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~f  103 (226)
T d1ve3a1          29 PLLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFE-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTF  103 (226)
T ss_dssp             HHHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCE
T ss_pred             HHHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcc-cccccccccchhhhhhhhccccccccccccccccccccCcCc
Confidence            345444  345579999999999999999976  457 999998 678887764     26789999998764 443  3


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      |+|++.+++|++++.+..++|++++++|+|||+++|....
T Consensus       104 D~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         104 DYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            9999999999999888889999999999999999987654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.7e-15  Score=129.21  Aligned_cols=105  Identities=14%  Similarity=0.211  Sum_probs=89.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC-CCC--Cceeeehh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS-IPA--ANAIFMKW  227 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~-~p~--~D~i~~~~  227 (309)
                      ..+..+|||||||+|.++..+++.++. + ++++|. +.+++.|++.      ++++++++|+.+. .+.  .|+|++.+
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~-v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~  135 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFR-E-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW  135 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCS-E-EEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCC-E-EEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            345679999999999999999877753 6 999999 7888877642      5689999999764 333  39999999


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      ++|++++++..++|+++++.|+|||++++.|...++.
T Consensus       136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~  172 (222)
T d2ex4a1         136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG  172 (222)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS
T ss_pred             ccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccc
Confidence            9999999988899999999999999999999887664

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.52  E-value=1.2e-14  Score=121.63  Aligned_cols=109  Identities=13%  Similarity=0.103  Sum_probs=89.5

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCC-CCC-
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSI-PAA-  220 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~-p~~-  220 (309)
                      .++.... +-.+.+|||||||+|..+..++++.  .+ ++++|+ +.+++.+++      .+++++...|+.+.. ++. 
T Consensus        21 ~~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g--~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~f   96 (198)
T d2i6ga1          21 DVLAAAK-VVAPGRTLDLGCGNGRNSLYLAANG--YD-VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEY   96 (198)
T ss_dssp             HHHHHHT-TSCSCEEEEETCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCE
T ss_pred             HHHHHcc-cCCCCcEEEECCCCCHHHHHHHHHh--hh-hccccCcHHHHHHHHHHhhhccccchhhhheecccccccccc
Confidence            4555553 5566799999999999999999985  46 999999 567776543      277999999998753 334 


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      |+|++..++|++++++..++|++++++|+|||++++......
T Consensus        97 D~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~  138 (198)
T d2i6ga1          97 DFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDT  138 (198)
T ss_dssp             EEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC-
T ss_pred             cEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCC
Confidence            999999999999999999999999999999999999876543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.51  E-value=9.2e-15  Score=129.28  Aligned_cols=107  Identities=17%  Similarity=0.185  Sum_probs=89.3

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-Cc
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-AN  221 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-~D  221 (309)
                      +++...+..++.+|||||||+|.++..+++.+|. .+ ++++|+ +.+++.++++     .+++++.+|+.+. +++ .|
T Consensus        18 l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~-v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD   96 (281)
T d2gh1a1          18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD   96 (281)
T ss_dssp             HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCE-EEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred             HHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCE-EEEEecchhHhhhhhcccccccccccccccccccccccCCce
Confidence            4444323667889999999999999999999885 67 999998 6788877642     4789999999775 444 49


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +|++++++|++++.+  ++|++++++|+|||++++.|+.
T Consensus        97 ~v~~~~~l~~~~d~~--~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          97 IAICHAFLLHMTTPE--TMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             EEEEESCGGGCSSHH--HHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEEehhhhcCCCHH--HHHHHHHHHcCcCcEEEEEECC
Confidence            999999999999874  8999999999999999999965

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=4e-14  Score=122.21  Aligned_cols=107  Identities=17%  Similarity=0.268  Sum_probs=86.8

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCC-CCC-C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNS-IPA-A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~-~p~-~  220 (309)
                      ..+++.+. ..+..+|||||||+|.++..++++.  .+ ++++|+ +.+++.|+++     .+++++++|+.+. +++ .
T Consensus        31 ~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~-v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~f  106 (251)
T d1wzna1          31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YE-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF  106 (251)
T ss_dssp             HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eE-EEEEeeccccccccccccccccccchheehhhhhccccccc
Confidence            44555554 5566799999999999999999875  46 999999 6789888753     5899999999764 444 4


Q ss_pred             ceeeeh-hhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          221 NAIFMK-WVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       221 D~i~~~-~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      |+|++. .++|+++.++..++|++++++|+|||++++.-.
T Consensus       107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            998875 688888888889999999999999999987543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.46  E-value=8.7e-14  Score=115.12  Aligned_cols=110  Identities=11%  Similarity=0.026  Sum_probs=90.5

Q ss_pred             HHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------------------CCceEEeC
Q 021707          151 VLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------------------PGVTHIGG  211 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------------------~ri~~~~~  211 (309)
                      ....+. .+++.+|||||||+|..+..|+++  +.+ ++++|+ +.+++.+++.                  ..+++..+
T Consensus        12 ~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (201)
T d1pjza_          12 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   87 (201)
T ss_dssp             HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence            344453 777889999999999999999987  567 999999 6788777541                  45788999


Q ss_pred             CCCCCCCC----CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          212 DMFNSIPA----ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       212 d~~~~~p~----~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      |+++..+.    .|+|+.+.++|++++++..+.++++++.|+|||++++........
T Consensus        88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~  144 (201)
T d1pjza_          88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA  144 (201)
T ss_dssp             CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS
T ss_pred             cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccc
Confidence            99875332    399999999999999988999999999999999998877665554

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=8e-14  Score=117.14  Aligned_cols=92  Identities=20%  Similarity=0.163  Sum_probs=76.9

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--CceeeehhhhhcCChhH
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWTDDE  236 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~d~~  236 (309)
                      ..+|||||||+|.++..+.      + .+++|+ +.+++.++++ +++++.+|+.+. .+.  .|+|++.++||++++. 
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~-~~giD~s~~~~~~a~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~-  107 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------I-KIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-  107 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------C-CEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH-
T ss_pred             CCeEEEECCCCcccccccc------e-EEEEeCChhhccccccc-cccccccccccccccccccccccccccccccccc-
Confidence            4589999999999987773      4 789998 7788887654 799999999764 443  3999999999999876 


Q ss_pred             HHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          237 CKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       237 ~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                       .++|++++++|+|||++++.++...
T Consensus       108 -~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_         108 -ERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             -HHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             -ccchhhhhhcCCCCceEEEEecCCc
Confidence             4899999999999999999986543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.41  E-value=1.3e-13  Score=118.99  Aligned_cols=94  Identities=19%  Similarity=0.121  Sum_probs=77.6

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCC-CCC-Cceeeeh-hhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNS-IPA-ANAIFMK-WVLA  230 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~-~p~-~D~i~~~-~vlh  230 (309)
                      .+.+|||||||+|.++..+++++.  + ++++|+ +.+++.|++     ..+++++++|+.+. .++ .|+|++. ++++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~-v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--N-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--E-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--c-cEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeee
Confidence            357899999999999999999865  5 999999 778888765     25799999999765 444 4988864 7777


Q ss_pred             cCC-hhHHHHHHHHHHHhcCCCcEEEE
Q 021707          231 TWT-DDECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       231 ~~~-d~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                      ++. .++..++|+++++.|+|||.+++
T Consensus       114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         114 YIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             GCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            764 56778999999999999998885

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.38  E-value=5.5e-13  Score=117.60  Aligned_cols=113  Identities=13%  Similarity=0.200  Sum_probs=91.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~  219 (309)
                      .+.+++.++ .+++.+|||||||.|.++..++++++ .+ ++++|+ +..++.+++       ..++.+...|+.+....
T Consensus        41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~-v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~  117 (280)
T d2fk8a1          41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEP  117 (280)
T ss_dssp             HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-ee-EEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccc
Confidence            456788885 88899999999999999999888874 68 999998 445544432       36788888887543223


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      .|.|++..+++++++..-..+|+++++.|+|||+++|.+....+
T Consensus       118 fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~  161 (280)
T d2fk8a1         118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH  161 (280)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             hhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccC
Confidence            59999999999999887789999999999999999998766544

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.37  E-value=2e-13  Score=116.49  Aligned_cols=97  Identities=21%  Similarity=0.307  Sum_probs=80.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC--CCCceEEeCCCCCC-CCC-CceeeehhhhhcC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS--IPGVTHIGGDMFNS-IPA-ANAIFMKWVLATW  232 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~--~~ri~~~~~d~~~~-~p~-~D~i~~~~vlh~~  232 (309)
                      +.++.+|||||||+|.++..++++..  + ++++|+ +.+++.+++  .++++++.+|+.+. .++ .|+|++.++|||+
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~   94 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFN--D-ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHI   94 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS--C-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGC
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCC--e-EEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEec
Confidence            44567899999999999999988753  5 999999 678888764  36799999988664 344 4999999999999


Q ss_pred             ChhHHHHHHHHHH-HhcCCCcEEEEecc
Q 021707          233 TDDECKLIMENCY-KALLAGGKLIACEP  259 (309)
Q Consensus       233 ~d~~~~~iL~~~~-~aL~pgG~l~i~e~  259 (309)
                      ++.  .++|++++ +.|+|||+++|.-+
T Consensus        95 ~d~--~~~l~~i~~~~Lk~gG~l~i~~p  120 (225)
T d2p7ia1          95 DDP--VALLKRINDDWLAEGGRLFLVCP  120 (225)
T ss_dssp             SSH--HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCH--HHHHHHHHHHhcCCCceEEEEeC
Confidence            887  58899998 68999999999743

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=2.9e-13  Score=115.91  Aligned_cols=97  Identities=19%  Similarity=0.211  Sum_probs=79.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCC--Cceeee-hhhhhcC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPA--ANAIFM-KWVLATW  232 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~--~D~i~~-~~vlh~~  232 (309)
                      .....+|||||||+|.++..+++.  ..+ ++++|. +.+++.++++....++.+|+.+. ++.  .|+|++ ..++|++
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~  116 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER--GFE-VVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYV  116 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred             cCCCCEEEEECCCCchhccccccc--ceE-EEEeecccccccccccccccccccccccccccccccccceeeecchhhhh
Confidence            345679999999999999999876  457 999999 78899888765555778888653 543  399986 5799999


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          233 TDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      +|.+  ++|+++++.|+|||.+++..+
T Consensus       117 ~d~~--~~l~~i~r~Lk~gG~~ii~~~  141 (246)
T d2avna1         117 ENKD--KAFSEIRRVLVPDGLLIATVD  141 (246)
T ss_dssp             SCHH--HHHHHHHHHEEEEEEEEEEEE
T ss_pred             hhHH--HHHHHHHhhcCcCcEEEEEEC
Confidence            8874  799999999999999988653

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.37  E-value=5.5e-13  Score=115.63  Aligned_cols=104  Identities=16%  Similarity=0.147  Sum_probs=82.9

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC-C-CC
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS-I-PA  219 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~-~-p~  219 (309)
                      .+++.+  .++..+|||||||+|..+..+++..+ .+ ++++|+ +.+++.|++       ..++.+..+|+... . +.
T Consensus        16 ~lI~~~--~~~~~~VLDlGCG~G~~~~~~~~~~~-~~-v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~   91 (252)
T d1ri5a_          16 CLIRLY--TKRGDSVLDLGCGKGGDLLKYERAGI-GE-YYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG   91 (252)
T ss_dssp             HHHHHH--CCTTCEEEEETCTTTTTHHHHHHHTC-SE-EEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCS
T ss_pred             HHHHHh--CCCcCEEEEecccCcHHHHHHHHcCC-Ce-EEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccc
Confidence            355555  34568999999999999999987743 36 899999 678877753       25799999999764 2 23


Q ss_pred             --CceeeehhhhhcC--ChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          220 --ANAIFMKWVLATW--TDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       220 --~D~i~~~~vlh~~--~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                        .|+|++..++|++  +.++..++|+++++.|+|||++++.
T Consensus        92 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          92 KEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             SCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence              4999999999986  4466789999999999999998875

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1e-12  Score=112.28  Aligned_cols=104  Identities=9%  Similarity=-0.015  Sum_probs=86.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----------------------CCCceEEeCCC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----------------------IPGVTHIGGDM  213 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----------------------~~ri~~~~~d~  213 (309)
                      ...+.+|||+|||+|..+..|++.  +.+ ++++|. +.+++.+++                       ..++++.++|+
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~-V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~  119 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR--GHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI  119 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT--TCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence            566789999999999999999987  557 999999 667765421                       15799999999


Q ss_pred             CCCC--C-C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          214 FNSI--P-A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       214 ~~~~--p-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      ++..  + . .|+|+...++|++++++..+.+++++++|+|||++++.....+..
T Consensus       120 ~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~  174 (229)
T d2bzga1         120 FDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPT  174 (229)
T ss_dssp             GGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTT
T ss_pred             hhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCC
Confidence            8752  2 2 399999999999999999999999999999999988887766543

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=7.7e-13  Score=115.92  Aligned_cols=92  Identities=17%  Similarity=0.229  Sum_probs=78.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-CCCceEEeCCCCCC-CCC--CceeeehhhhhcCC
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-IPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWT  233 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~  233 (309)
                      .+..+|||||||+|.++..+++.+|+.+ ++++|+ +.+++.+++ .++++++.+|+.+. ++.  .|+|+..+++|+  
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEIT-TFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSE-EEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC--
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCE-EEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH--
Confidence            4567999999999999999999999999 999999 778888765 48999999999764 444  399998888765  


Q ss_pred             hhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          234 DDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       234 d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                             +++++++|||||++++..+.
T Consensus       160 -------~~e~~rvLkpgG~l~~~~p~  179 (268)
T d1p91a_         160 -------AEELARVVKPGGWVITATPG  179 (268)
T ss_dssp             -------HHHHHHHEEEEEEEEEEEEC
T ss_pred             -------HHHHHHHhCCCcEEEEEeeC
Confidence                   46789999999999998754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.29  E-value=2.3e-12  Score=107.29  Aligned_cols=104  Identities=12%  Similarity=0.122  Sum_probs=82.6

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC--------CCCceEEeCCCCCCCCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS--------IPGVTHIGGDMFNSIPA  219 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~--------~~ri~~~~~d~~~~~p~  219 (309)
                      +-+++.++ ..+..+|||||||+|.++..+++.+|+   ++++|. +.+++.+++        ..+++++.+|+++..+.
T Consensus        42 ~lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~---v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~  117 (194)
T d1dusa_          42 KILVENVV-VDKDDDILDLGCGYGVIGIALADEVKS---TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD  117 (194)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred             HHHHHhCC-cCCCCeEEEEeecCChhHHHHHhhccc---cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhcc
Confidence            34566665 666789999999999999999988774   788888 666766653        25799999999887554


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                        .|+|++...+|... +...++++++.+.|+|||++++.
T Consensus       118 ~~fD~Ii~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         118 RKYNKIITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             SCEEEEEECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEEEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEE
Confidence              49999988776543 44578999999999999998875

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=4.1e-12  Score=112.07  Aligned_cols=111  Identities=12%  Similarity=0.113  Sum_probs=90.4

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC-------CCCCceEEeCCCCCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP-------SIPGVTHIGGDMFNSIPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~-------~~~ri~~~~~d~~~~~p~  219 (309)
                      .+.+++.+. .+++.+|||||||.|.++..+++++ +++ ++++++ +.-++.++       -.+++++..+|+.+ .|.
T Consensus        51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~-v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~  126 (285)
T d1kpga_          51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVN-VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDE  126 (285)
T ss_dssp             HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-Ccc-eEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-ccc
Confidence            466778885 8889999999999999999999998 588 999998 33333332       23899999999854 344


Q ss_pred             -CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          220 -ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       220 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                       .|.|+....+.++....-..+++++++.|+|||+++|.+....
T Consensus       127 ~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~  170 (285)
T d1kpga_         127 PVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  170 (285)
T ss_dssp             CCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             cccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEecc
Confidence             5999999888888876667899999999999999999887644

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=8.5e-12  Score=112.32  Aligned_cols=112  Identities=13%  Similarity=0.213  Sum_probs=88.4

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC---------------CCCceEEeC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS---------------IPGVTHIGG  211 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~---------------~~ri~~~~~  211 (309)
                      ...+++.+. .....+|+|||||+|.++..+++.++..+ ++++|+ +.+++.+++               ..+|+++.+
T Consensus       140 ~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~-~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g  217 (328)
T d1nw3a_         140 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKH-HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  217 (328)
T ss_dssp             HHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSE-EEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred             HHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence            456777775 78889999999999999999999998888 999998 555555432               368999999


Q ss_pred             CCCCC-CC----CCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          212 DMFNS-IP----AANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       212 d~~~~-~p----~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      |+.+. +.    .+|+|++++.+| ++  +..+.|+++++.|||||++++.+.+.+.+
T Consensus       218 d~~~~~~~~~~~~advi~~~~~~f-~~--~~~~~l~e~~r~LKpGg~iv~~~~~~~~~  272 (328)
T d1nw3a_         218 DFLSEEWRERIANTSVIFVNNFAF-GP--EVDHQLKERFANMKEGGRIVSSKPFAPLN  272 (328)
T ss_dssp             CTTSHHHHHHHHHCSEEEECCTTT-CH--HHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             cccccccccccCcceEEEEcceec-ch--HHHHHHHHHHHhCCCCcEEEEecccCCCC
Confidence            99864 22    257888766553 33  34688999999999999999999887664

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.26  E-value=9.3e-12  Score=110.08  Aligned_cols=114  Identities=13%  Similarity=0.137  Sum_probs=90.3

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech-hHHhhCCC-------CCCceEEeCCCCCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP-EVVGEAPS-------IPGVTHIGGDMFNSIPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p-~~~~~a~~-------~~ri~~~~~d~~~~~p~  219 (309)
                      ...+++.+. ++.+.+|||||||.|.++..++++++ ++ +++++++ +.++.+++       ..++++...|+...-..
T Consensus        50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~-v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  126 (291)
T d1kpia_          50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VN-VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP  126 (291)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred             HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cc-eeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence            456778886 88899999999999999999999985 68 9999983 33333322       37899998887433333


Q ss_pred             CceeeehhhhhcCChh-------HHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          220 ANAIFMKWVLATWTDD-------ECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~-------~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .|.|+....+.++++.       .-..+++++++.|+|||++++.....++.
T Consensus       127 fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~  178 (291)
T d1kpia_         127 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDK  178 (291)
T ss_dssp             CSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCH
T ss_pred             cceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCc
Confidence            6999999999888762       34689999999999999999998877654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.24  E-value=2.8e-11  Score=103.44  Aligned_cols=106  Identities=15%  Similarity=0.102  Sum_probs=85.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhC----CCCCCceEEeCCCCCCC--C-C-Cceeeehhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEA----PSIPGVTHIGGDMFNSI--P-A-ANAIFMKWV  228 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a----~~~~ri~~~~~d~~~~~--p-~-~D~i~~~~v  228 (309)
                      ...+.+|||+|||+|.++..+++..|+.+ ++++|+ |.+++.+    .+.+++..+.+|...+.  . . .|++++.+.
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~-V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~  150 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIADKGI-VYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCCCCE-EEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeecc
Confidence            67789999999999999999999999998 999999 6666554    44588888988887652  2 2 377777777


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCC
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSN  266 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~  266 (309)
                      +|++++.  ..+++++++.|+|||+++|.+.....+..
T Consensus       151 ~~~~~~~--~~~l~~~~r~LKpgG~~~i~~k~~~~d~~  186 (230)
T d1g8sa_         151 VAQPNQA--EILIKNAKWFLKKGGYGMIAIKARSIDVT  186 (230)
T ss_dssp             CCSTTHH--HHHHHHHHHHEEEEEEEEEEEEGGGTCSS
T ss_pred             ccchHHH--HHHHHHHHHhcccCceEEEEeeccccCCC
Confidence            7766544  57899999999999999999888777654

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.21  E-value=8.4e-12  Score=104.76  Aligned_cols=96  Identities=13%  Similarity=0.131  Sum_probs=75.4

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC---CCC--Cceeeehhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS---IPA--ANAIFMKWV  228 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~---~p~--~D~i~~~~v  228 (309)
                      ...|||||||+|.++..+++.+|+.. ++++|. +.++..+.+      .++|.++.+|+...   ++.  .|.|++.+.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~-~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDIN-YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCc-EEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence            35799999999999999999999999 999998 555555432      37899999998643   444  388887776


Q ss_pred             hhcCChhH------HHHHHHHHHHhcCCCcEEEEe
Q 021707          229 LATWTDDE------CKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       229 lh~~~d~~------~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ...+....      ...+|+.++++|+|||.|.|.
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            64433321      247999999999999999886

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.19  E-value=9.4e-12  Score=89.61  Aligned_cols=65  Identities=18%  Similarity=0.218  Sum_probs=59.9

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcC
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~   77 (309)
                      +.+++|+|+.+ .+||.|++|||+++    |+++..+.|+||+|++.|++++++    ++.|++|+.|+.|.++
T Consensus        20 ~av~L~ifd~l-~~gp~s~~eLA~~~----g~~~~~l~rlLr~l~a~gl~~e~~----~~~y~lt~~s~~L~~D   84 (85)
T d1tw3a1          20 TAATLRLVDHI-LAGARTVKALAART----DTRPEALLRLIRHLVAIGLLEEDA----PGEFVPTEVGELLADD   84 (85)
T ss_dssp             HHHHTTHHHHH-HTTCCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEE----TTEEEECTTGGGGSTT
T ss_pred             HHHHcCcHHHh-ccCCCCHHHHHHHh----CcChhHHHHHHHHHHHCCCeEecC----CCeEecCHHHHHhhcC
Confidence            35789999977 68999999999999    999999999999999999999986    7899999999998865

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.18  E-value=1.4e-11  Score=103.75  Aligned_cols=104  Identities=10%  Similarity=0.033  Sum_probs=79.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC--C-ceeeehhh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA--A-NAIFMKWV  228 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~--~-D~i~~~~v  228 (309)
                      ++++.+|||+|||+|..+..+++..|+.+ ++++|+ |.+++.+++    .+++.++.+|...+ .+.  . ++.++.+.
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~-V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~  132 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  132 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSE-EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCe-EEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEec
Confidence            67789999999999999999999999888 999999 778877654    48999999998765 222  2 22223333


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      ++++.+  ...+|+++++.|+|||+++|.+.....+
T Consensus       133 ~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~d  166 (209)
T d1nt2a_         133 IAQKNQ--IEILKANAEFFLKEKGEVVIMVKARSID  166 (209)
T ss_dssp             CCSTTH--HHHHHHHHHHHEEEEEEEEEEEEHHHHC
T ss_pred             ccChhh--HHHHHHHHHHHhccCCeEEEEEEccccC
Confidence            444443  3588999999999999999987554433

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.17  E-value=6e-12  Score=104.06  Aligned_cols=104  Identities=19%  Similarity=0.186  Sum_probs=82.0

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---I  217 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~  217 (309)
                      ..++..+. ..++.+|||||||+|.++.++++.++  + ++++|. |.+++.++++       ++|+++.+|+.+.   .
T Consensus        23 ~~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~--~-V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~   98 (186)
T d1l3ia_          23 CLIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVR--R-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI   98 (186)
T ss_dssp             HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSS--E-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred             HHHHHhcC-CCCCCEEEEEECCeEcccccccccce--E-EEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccccc
Confidence            34566664 77789999999999999999988754  6 999998 7888887652       6999999998654   2


Q ss_pred             CCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          218 PAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       218 p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      +..|+|++....+++     .++++.+.+.|+|||++++.....
T Consensus        99 ~~~D~v~~~~~~~~~-----~~~~~~~~~~LkpgG~lvi~~~~~  137 (186)
T d1l3ia_          99 PDIDIAVVGGSGGEL-----QEILRIIKDKLKPGGRIIVTAILL  137 (186)
T ss_dssp             CCEEEEEESCCTTCH-----HHHHHHHHHTEEEEEEEEEEECBH
T ss_pred             CCcCEEEEeCccccc-----hHHHHHHHHHhCcCCEEEEEeecc
Confidence            335999987655432     478999999999999998876443

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=1.7e-11  Score=106.61  Aligned_cols=120  Identities=12%  Similarity=0.144  Sum_probs=95.4

Q ss_pred             HHHHHhhcCCccc----HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCC------
Q 021707          135 LMRRAISGVSVPF----MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPS------  202 (309)
Q Consensus       135 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~------  202 (309)
                      .|...|...++..    +..++..++ ...+.+|||+|||+|.++..|++. .|+-+ ++.+|. +++++.|++      
T Consensus        68 ~~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~-V~~~d~~~~~~~~Ar~n~~~~~  145 (264)
T d1i9ga_          68 DYVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQ-VISYEQRADHAEHARRNVSGCY  145 (264)
T ss_dssp             HHHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcE-EEEecCCHHHHHHHHHhhhhhc
Confidence            3555677766644    344677776 888999999999999999999988 68889 999998 777777764      


Q ss_pred             ---CCCceEEeCCCCCC-CCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          203 ---IPGVTHIGGDMFNS-IPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       203 ---~~ri~~~~~d~~~~-~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                         .++++++.+|+.+. +++  .|.|++     |.++..  ..+.+++++|||||++++..+....
T Consensus       146 ~~~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~LkpGG~lv~~~P~i~Q  205 (264)
T d1i9ga_         146 GQPPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVATVTQ  205 (264)
T ss_dssp             TSCCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESSHHH
T ss_pred             cCCCceEEEEecccccccccCCCcceEEE-----ecCCHH--HHHHHHHhccCCCCEEEEEeCccCh
Confidence               27899999999764 655  399886     567663  7899999999999999998766654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.15  E-value=2.4e-11  Score=104.91  Aligned_cols=117  Identities=14%  Similarity=0.102  Sum_probs=82.8

Q ss_pred             HHHHhhcCCcccH----HHHHhhcCCCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCC-------
Q 021707          136 MRRAISGVSVPFM----TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPS-------  202 (309)
Q Consensus       136 f~~~m~~~~~~~~----~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~-------  202 (309)
                      |...|...++..+    ..++..++ ...+.+|||+|||+|.++..+++. .|+.+ ++++|. ++.++.|++       
T Consensus        58 ~~~~~~r~~qiiypkD~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~-V~~vD~~e~~~~~A~~n~~~~~~  135 (250)
T d1yb2a1          58 FGRVIRRNTQIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFYD  135 (250)
T ss_dssp             HHHHC------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSE-EEEECSCHHHHHHHHHHHHTTSC
T ss_pred             HHhhCCCCCcccCHHHHHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhcC
Confidence            4445665555332    33566665 788899999999999999999987 57888 999998 667776654       


Q ss_pred             CCCceEEeCCCCCCCCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          203 IPGVTHIGGDMFNSIPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       203 ~~ri~~~~~d~~~~~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      ..++++..+|+.+..++  .|.|++     +.++.  .++|++++++|+|||++++.-+..
T Consensus       136 ~~nv~~~~~Di~~~~~~~~fD~V~l-----d~p~p--~~~l~~~~~~LKpGG~lv~~~P~i  189 (250)
T d1yb2a1         136 IGNVRTSRSDIADFISDQMYDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNF  189 (250)
T ss_dssp             CTTEEEECSCTTTCCCSCCEEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSH
T ss_pred             CCceEEEEeeeecccccceeeeeee-----cCCch--HHHHHHHHHhcCCCceEEEEeCCc
Confidence            27899999999877665  399886     45555  378999999999999999875543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.14  E-value=1.9e-11  Score=103.30  Aligned_cols=100  Identities=17%  Similarity=0.298  Sum_probs=81.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIPA  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p~  219 (309)
                      ...+++.++ .+++.+|||||||+|.++..+++.. |+.+ ++.+|. +.+++.+++      ..++.++.+|..+..+.
T Consensus        64 ~a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~-V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~  141 (213)
T d1dl5a1          64 MALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE  141 (213)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred             hHHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCc-EEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc
Confidence            345677775 8888999999999999999999876 5677 999998 777777765      27899999998775443


Q ss_pred             ---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          220 ---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       220 ---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                         .|+|++...+++.++.        +.+.|+|||+|++.
T Consensus       142 ~~~fD~I~~~~~~~~~p~~--------l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         142 FSPYDVIFVTVGVDEVPET--------WFTQLKEGGRVIVP  174 (213)
T ss_dssp             GCCEEEEEECSBBSCCCHH--------HHHHEEEEEEEEEE
T ss_pred             ccchhhhhhhccHHHhHHH--------HHHhcCCCcEEEEE
Confidence               4999999999988753        56779999999884

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=5.8e-11  Score=109.09  Aligned_cols=114  Identities=14%  Similarity=0.238  Sum_probs=85.7

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---------------CCceE-E
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---------------PGVTH-I  209 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---------------~ri~~-~  209 (309)
                      .+..+++.++ ...+.+|||||||.|..+..+++.+|..+ ++|+|+ +.+++.|++.               ..+.+ .
T Consensus       204 ~i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~-v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         204 FLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCAL-SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            3556777775 88889999999999999999999998778 999998 6676666531               23344 3


Q ss_pred             eCCCCCC------CCCCceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          210 GGDMFNS------IPAANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       210 ~~d~~~~------~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      .++++..      ++.+|++++.+.+| .  ++..+.|+++++.|||||+|++.+.+.+...
T Consensus       282 ~~~f~~~~~~d~~~~~adVV~inn~~f-~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~~  340 (406)
T d1u2za_         282 KKSFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKVGCKIISLKSLRSLTY  340 (406)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTTC
T ss_pred             eechhhccccccccccceEEEEecccC-c--hHHHHHHHHHHHhcCCCcEEEEecccCCCch
Confidence            4566543      33458888766443 2  3456899999999999999999998776653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=2e-11  Score=107.77  Aligned_cols=96  Identities=19%  Similarity=0.220  Sum_probs=72.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----------CCceEEeCCCCCC---CC--C-Cc
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----------PGVTHIGGDMFNS---IP--A-AN  221 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----------~ri~~~~~d~~~~---~p--~-~D  221 (309)
                      .+..+|||||||+|.++..|++.  +.+ ++++|+ +.+++.|+++          .+..+...|+...   .|  . .|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~--g~~-v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEE--GFS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHc--CCe-eeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence            34579999999999999999987  467 999999 7788877542          2345556666431   22  2 48


Q ss_pred             eeee-hhhhhcCCh-----hHHHHHHHHHHHhcCCCcEEEEe
Q 021707          222 AIFM-KWVLATWTD-----DECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       222 ~i~~-~~vlh~~~d-----~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      +|++ .++++++++     ++..++|++++++|+|||++++.
T Consensus       132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            7775 568888764     46788999999999999988874

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.6e-11  Score=107.72  Aligned_cols=109  Identities=16%  Similarity=0.137  Sum_probs=74.3

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHH----hcCCCc-eEEEeec-hhHHhhCCC----C---CCceE--EeCCC
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQ----KHHFIC-EGINFDL-PEVVGEAPS----I---PGVTH--IGGDM  213 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~----~~p~~~-~~~~~D~-p~~~~~a~~----~---~ri~~--~~~d~  213 (309)
                      +.++..+...+...+|||||||+|.++..+++    .+|+.. .++++|. +.+++.+++    .   .++.+  ...++
T Consensus        29 ~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  108 (280)
T d1jqea_          29 PGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETS  108 (280)
T ss_dssp             HHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCH
T ss_pred             HHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhh
Confidence            33444432133445899999999998776655    466654 2689998 567766643    1   33333  33332


Q ss_pred             C-------CCCC-C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          214 F-------NSIP-A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       214 ~-------~~~p-~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      .       ...+ . .|+|++.+++|+++|.  .++|+++++.|+|||.++|...
T Consensus       109 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         109 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             HHHHHHHTTSSSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hhhcchhcccCCCCceeEEEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEe
Confidence            1       1222 2 4999999999999876  4899999999999999998754

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.10  E-value=1.1e-10  Score=97.83  Aligned_cols=95  Identities=16%  Similarity=0.271  Sum_probs=73.4

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC---CCC--Cceeeehhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS---IPA--ANAIFMKWV  228 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~---~p~--~D~i~~~~v  228 (309)
                      ...|||||||+|.++..+++.+|+.. ++++|. +.++..+.+      .++|+++.+|+.+.   +|.  .|.|++.+.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~-~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP  110 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDIN-YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  110 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCc-eEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc
Confidence            35799999999999999999999999 999998 555655532      37899999998653   444  377765543


Q ss_pred             hhcCChhH-------HHHHHHHHHHhcCCCcEEEEe
Q 021707          229 LATWTDDE-------CKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       229 lh~~~d~~-------~~~iL~~~~~aL~pgG~l~i~  257 (309)
                       ..|+...       ...+|+.+++.|+|||.|.+.
T Consensus       111 -dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         111 -DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             -CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             -ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence             3344331       257999999999999999875

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.9e-12  Score=106.41  Aligned_cols=97  Identities=14%  Similarity=0.120  Sum_probs=73.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCC---CCCC--Cceee---
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFN---SIPA--ANAIF---  224 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~---~~p~--~D~i~---  224 (309)
                      ..+.+|||||||+|..+..+++..| .+ ++++|+ |.+++.++++     .++.++.+|...   .++.  .|.|+   
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~-v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~  129 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI-DE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDT  129 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EE-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC-Ce-EEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecc
Confidence            4567999999999999999998765 36 899998 7788877642     567777776532   2443  25554   


Q ss_pred             --ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          225 --MKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       225 --~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                        ..+.++++++.  ..++++++++|+|||++++.+.
T Consensus       130 ~~~~~~~~~~~~~--~~~~~~~~r~LkpGG~~~~~~~  164 (229)
T d1zx0a1         130 YPLSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNL  164 (229)
T ss_dssp             CCCBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCH
T ss_pred             cccccccccccCH--HHHHHHHHHHcCCCcEEEEEec
Confidence              57777777665  5899999999999999988653

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.05  E-value=9.6e-11  Score=102.11  Aligned_cols=117  Identities=17%  Similarity=0.187  Sum_probs=90.7

Q ss_pred             HHHHhhcCCcccH----HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCCCC------
Q 021707          136 MRRAISGVSVPFM----TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAPSI------  203 (309)
Q Consensus       136 f~~~m~~~~~~~~----~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~~~------  203 (309)
                      |...|...++...    ..++..++ ...+.+|||+|||+|.++..+++.. |+.+ ++++|. +++++.|+++      
T Consensus        76 ~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~-V~~vD~~~~~~~~A~~~~~~~g~  153 (266)
T d1o54a_          76 EIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGK-VFAYEKREEFAKLAESNLTKWGL  153 (266)
T ss_dssp             HHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCE-EEEECCCHHHHHHHHHHHHHTTC
T ss_pred             HHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhcc
Confidence            4456766666443    34677776 8889999999999999999999875 7888 999998 7788777652      


Q ss_pred             -CCceEEeCCCCCCCCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          204 -PGVTHIGGDMFNSIPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       204 -~ri~~~~~d~~~~~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                       +++.+..+|+...++.  .|.|+     ++.++..  ++|++++++|||||++++..+..
T Consensus       154 ~~~v~~~~~d~~~~~~~~~~D~V~-----~d~p~p~--~~l~~~~~~LKpGG~lv~~~P~~  207 (266)
T d1o54a_         154 IERVTIKVRDISEGFDEKDVDALF-----LDVPDPW--NYIDKCWEALKGGGRFATVCPTT  207 (266)
T ss_dssp             GGGEEEECCCGGGCCSCCSEEEEE-----ECCSCGG--GTHHHHHHHEEEEEEEEEEESSH
T ss_pred             ccCcEEEeccccccccccceeeeE-----ecCCCHH--HHHHHHHhhcCCCCEEEEEeCcc
Confidence             6788888887665544  37664     4677763  78999999999999999986544

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.00  E-value=7e-11  Score=102.28  Aligned_cols=97  Identities=13%  Similarity=0.153  Sum_probs=75.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCC--Cceeeehhhhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPA--ANAIFMKWVLA  230 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~--~D~i~~~~vlh  230 (309)
                      .++.+|||+|||+|.+++.+++.  +.+ ++++|. |.+++.++++     -++++..+|+.+..+.  .|+|+++...|
T Consensus       119 ~~g~~VLDiGcGsG~l~i~aa~~--g~~-V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~~  195 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLAIAAEKL--GGK-ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             CccCEEEEcccchhHHHHHHHhc--CCE-EEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccccc
Confidence            35679999999999999988875  457 999998 7788777652     4578888888655443  49998864443


Q ss_pred             cCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          231 TWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       231 ~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                           ...++++.++++|+|||++++.+....+
T Consensus       196 -----~l~~l~~~~~~~LkpGG~lilSgil~~~  223 (254)
T d2nxca1         196 -----LHAALAPRYREALVPGGRALLTGILKDR  223 (254)
T ss_dssp             -----HHHHHHHHHHHHEEEEEEEEEEEEEGGG
T ss_pred             -----cHHHHHHHHHHhcCCCcEEEEEecchhh
Confidence                 3467899999999999999998766543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.9e-10  Score=96.62  Aligned_cols=100  Identities=19%  Similarity=0.130  Sum_probs=78.9

Q ss_pred             HHHHhhcC-CCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCCC-----------CCceEEeCCCC
Q 021707          149 TSVLDSYN-GFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPSI-----------PGVTHIGGDMF  214 (309)
Q Consensus       149 ~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~~-----------~ri~~~~~d~~  214 (309)
                      ..+++.+. ..+++.+|||||||+|..+..+++. .|..+ ++++|. +++++.++++           .+++++.+|..
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~-V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~  142 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGK-VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  142 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCce-EEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence            44666652 2567789999999999999988886 46778 999998 7777766542           68999999988


Q ss_pred             CCCCC---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          215 NSIPA---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       215 ~~~p~---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ...+.   .|.|++...+++.++.        +.+.|+|||++++.
T Consensus       143 ~~~~~~~~fD~I~~~~~~~~ip~~--------l~~~LkpGG~LV~p  180 (224)
T d1i1na_         143 MGYAEEAPYDAIHVGAAAPVVPQA--------LIDQLKPGGRLILP  180 (224)
T ss_dssp             GCCGGGCCEEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             cccchhhhhhhhhhhcchhhcCHH--------HHhhcCCCcEEEEE
Confidence            76443   3999999999887753        56789999999983

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=4.4e-10  Score=100.42  Aligned_cols=119  Identities=13%  Similarity=0.122  Sum_probs=90.4

Q ss_pred             HHHHHHhhcCCccc----HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHh-cCCCceEEEeec-hhHHhhCCC-----
Q 021707          134 GLMRRAISGVSVPF----MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK-HHFICEGINFDL-PEVVGEAPS-----  202 (309)
Q Consensus       134 ~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~~D~-p~~~~~a~~-----  202 (309)
                      ..|...|...++..    +..++..++ ...+.+|||+|||+|.++..|++. .|+-+ ++.+|. +++++.|++     
T Consensus        69 ~d~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~-V~t~E~~~~~~~~A~~n~~~~  146 (324)
T d2b25a1          69 EDYVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGR-VISFEVRKDHHDLAKKNYKHW  146 (324)
T ss_dssp             HHHHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcE-EEEecCCHHHHHHHHHHHHHh
Confidence            44666777777744    334677776 888999999999999999999987 58888 999998 666666543     


Q ss_pred             ------------CCCceEEeCCCCCC---CCC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          203 ------------IPGVTHIGGDMFNS---IPA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       203 ------------~~ri~~~~~d~~~~---~p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                                  .+++++..+|+...   ++.  .|.|++     |.+++.  .+|.+++++|||||+|++.-+..
T Consensus       147 ~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         147 RDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             HHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEEEESSH
T ss_pred             hhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEEEeCCH
Confidence                        26899999998654   333  388876     556553  57999999999999999876544

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.92  E-value=5e-10  Score=81.45  Aligned_cols=66  Identities=15%  Similarity=0.098  Sum_probs=56.5

Q ss_pred             chhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707            4 NECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus         4 ~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      +.+++|+|+.+ .+||.|++|||+++    |++++.+.|+||+|++.|++++.+.+  .+.|++|+.+..|..
T Consensus        26 ~aveL~ifd~L-~~gp~t~~eLA~~~----g~~~~~l~rLlr~L~a~gll~~~~d~--~~~~~~t~~g~lL~d   91 (92)
T d1qzza1          26 VAATLRLVDHL-LAGADTLAGLADRT----DTHPQALSRLVRHLTVVGVLEGGEKQ--GRPLRPTRLGMLLAD   91 (92)
T ss_dssp             HHHHTTHHHHH-HTTCCSHHHHHHHH----TCCHHHHHHHHHHHHHTTSEECCCC---CCCCEECTTGGGGST
T ss_pred             HHHHcCchHHH-hCCCCCHHHHHHHH----CcCchHHHHHHHHHHHCCCeeeecCC--CceecccHHHHhccC
Confidence            35788889866 68999999999999    99999999999999999999988621  357889999988764

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.91  E-value=4.7e-10  Score=82.98  Aligned_cols=68  Identities=21%  Similarity=0.306  Sum_probs=56.6

Q ss_pred             chhhhhhhhhhc-CCCCCCHHHHHHHhCcCCCCCc---chHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcC
Q 021707            4 NECRDGRKKVRL-ANTPLSVSQILTCILPSGGGDA---ENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus         4 ~~~~~g~~~~~l-~~~~~t~~eLA~~~~~~~g~~~---~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~   77 (309)
                      +.+++|+|+.+- .++|+|++|||+++    ++++   +.|.|+||+|++.|++.+...  ++++|++||.|+.|+++
T Consensus        28 ~aveLgi~d~l~~~~~p~t~~eLa~~~----~~~~~~~~~L~RlLR~L~~~gi~~~~~~--~~~~Y~lt~~s~~Lv~~   99 (101)
T d1fp2a1          28 WAVEMNIPNIIQNHGKPISLSNLVSIL----QVPSSKIGNVRRLMRYLAHNGFFEIITK--EEESYALTVASELLVRG   99 (101)
T ss_dssp             HHHHTTHHHHHHHHTSCEEHHHHHHHH----TCCGGGHHHHHHHHHHHHHTTSEEEEES--SSEEEEECHHHHTTSTT
T ss_pred             HHHHcCcHHHHHHcCCCCCHHHHHHHc----CCCCccchHHHHHHHHHHhCCceeeecC--CCCeEecCHHHHHhhcC
Confidence            357889999775 35899999999999    8765   569999999999999987542  15789999999988876

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=7.9e-10  Score=96.43  Aligned_cols=97  Identities=20%  Similarity=0.211  Sum_probs=77.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCCCCC--Cceeeehhh-
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNSIPA--ANAIFMKWV-  228 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~~p~--~D~i~~~~v-  228 (309)
                      .+..+|||+|||+|..++.++..+|+.+ ++++|. +..++.|+++      .+|+++.+|++++.+.  .|+|+++-. 
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~-v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPY  185 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCE-IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPY  185 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCC
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcce-eeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchh
Confidence            4557899999999999999999999999 999999 6777777653      6899999999988664  499987511 


Q ss_pred             ------------hhcCCh----------hHHHHHHHHHHHhcCCCcEEEE
Q 021707          229 ------------LATWTD----------DECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       229 ------------lh~~~d----------~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                                  +.+=|.          .-..++++++.+.|+|||.+++
T Consensus       186 i~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l  235 (274)
T d2b3ta1         186 IDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL  235 (274)
T ss_dssp             BCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             hhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence                        111110          2356799999999999998777

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.86  E-value=2.5e-09  Score=88.56  Aligned_cols=98  Identities=19%  Similarity=0.159  Sum_probs=73.6

Q ss_pred             CcceEEEecCCccH----HHHHHHHhcC----CCceEEEeec-hhHHhhCCCC---------------------------
Q 021707          160 GVKRLVDVGGSAGD----CLRMILQKHH----FICEGINFDL-PEVVGEAPSI---------------------------  203 (309)
Q Consensus       160 ~~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~~D~-p~~~~~a~~~---------------------------  203 (309)
                      +..+|+++|||+|.    +++.+.+..+    +.+ +++.|+ +.+++.|++.                           
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~-I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWK-VFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEE-EEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceE-EEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            45799999999998    4444554432    345 889998 5667655420                           


Q ss_pred             ----------CCceEEeCCCCCCC-C--C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          204 ----------PGVTHIGGDMFNSI-P--A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       204 ----------~ri~~~~~d~~~~~-p--~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                                ..+++...+..... +  . .|+|+|+++|++++++...++|++++++|+|||.|++..
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~  171 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH  171 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence                      34566777766542 2  2 399999999999999999999999999999999988874

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.8e-10  Score=97.86  Aligned_cols=103  Identities=15%  Similarity=0.065  Sum_probs=72.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CC--------------------------
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PG--------------------------  205 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~r--------------------------  205 (309)
                      ..++.+|||||||+|.++..+++... .+ ++++|+ +.+++.++++     ..                          
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~~-~~-v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDSF-QD-ITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  126 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCCCHhHHHHhcccc-Cc-EEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence            34578999999999998876665532 25 999998 6677766431     10                          


Q ss_pred             ----c-eEEeCCCC-----CCCCC--CceeeehhhhhcCCh--hHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          206 ----V-THIGGDMF-----NSIPA--ANAIFMKWVLATWTD--DECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       206 ----i-~~~~~d~~-----~~~p~--~D~i~~~~vlh~~~d--~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                          + .....+..     .+.+.  .|+|++.+++|+.+.  ++...+++++++.|+|||++++.+....
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~  197 (257)
T d2a14a1         127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL  197 (257)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred             HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence                0 11111211     12333  499999999998763  4667899999999999999999886543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.84  E-value=1.4e-09  Score=92.17  Aligned_cols=97  Identities=15%  Similarity=0.170  Sum_probs=76.5

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCCCCC---C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNSIPA---A  220 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~~p~---~  220 (309)
                      ..+++.++ .+++.+|||||||+|.++..+++..  .+ ++.+|. +..++.+++    ..+++++.+|....+|+   .
T Consensus        60 a~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~-V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pf  135 (224)
T d1vbfa_          60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DK-VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY  135 (224)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cc-cccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhH
Confidence            34677786 8888999999999999998888775  35 899997 666665543    48999999998776554   3


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      |.|++...+++.++.        +.+.|+|||+|++-
T Consensus       136 D~Iiv~~a~~~ip~~--------l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         136 DRVVVWATAPTLLCK--------PYEQLKEGGIMILP  164 (224)
T ss_dssp             EEEEESSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             HHHHhhcchhhhhHH--------HHHhcCCCCEEEEE
Confidence            999998888877653        45679999999873

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=1.2e-09  Score=97.42  Aligned_cols=94  Identities=18%  Similarity=0.158  Sum_probs=72.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCC-CCC--Cceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNS-IPA--ANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~-~p~--~D~i~~~~vl  229 (309)
                      ++.+|||||||+|.++..+++..+ .+ ++++|.++....+++       .++|+++.+|+.+. .|.  .|+|++....
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~-V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGA-RK-VIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SE-EEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCC-CE-EEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            357899999999999998888754 36 999998544333322       37899999999875 443  4999887776


Q ss_pred             hcCCh-hHHHHHHHHHHHhcCCCcEEE
Q 021707          230 ATWTD-DECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       230 h~~~d-~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      |.... .....++..+.+.|+|||+++
T Consensus       111 ~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         111 YCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             BTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            66543 356789999999999999886

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.80  E-value=6.7e-09  Score=88.07  Aligned_cols=111  Identities=19%  Similarity=0.177  Sum_probs=79.9

Q ss_pred             HHHhhcC--CCCCcceEEEecCCccHHHHHHHHhc-CCCceEEEeec-hhHHhhCC----CCCCceEEeCCCCCC--CCC
Q 021707          150 SVLDSYN--GFKGVKRLVDVGGSAGDCLRMILQKH-HFICEGINFDL-PEVVGEAP----SIPGVTHIGGDMFNS--IPA  219 (309)
Q Consensus       150 ~~~~~~~--~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~~D~-p~~~~~a~----~~~ri~~~~~d~~~~--~p~  219 (309)
                      .++..++  ....+.+|||+|||+|.++..+++.. |+-+ ++++|+ |.+++.++    ...++..+.+|...+  .+.
T Consensus        61 ~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~-V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~  139 (227)
T d1g8aa_          61 AIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGK-IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRA  139 (227)
T ss_dssp             HHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTT
T ss_pred             HHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCE-EEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccc
Confidence            3444443  26678999999999999999999985 7788 999998 66666553    457788888887654  221


Q ss_pred             ----CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          220 ----ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       220 ----~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                          .|++++  .+++..  +...+++++++.|+|||+++|.......+.
T Consensus       140 ~~~~vD~i~~--d~~~~~--~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~  185 (227)
T d1g8aa_         140 LVPKVDVIFE--DVAQPT--QAKILIDNAEVYLKRGGYGMIAVKSRSIDV  185 (227)
T ss_dssp             TCCCEEEEEE--CCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCT
T ss_pred             cccceEEEEE--Eccccc--hHHHHHHHHHHhcccCCeEEEEEECCccCC
Confidence                255554  333333  446789999999999999998765544443

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=2.3e-09  Score=96.02  Aligned_cols=94  Identities=17%  Similarity=0.221  Sum_probs=72.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC-------CCCceEEeCCCCCC-CCC--Cceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS-------IPGVTHIGGDMFNS-IPA--ANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~-------~~ri~~~~~d~~~~-~p~--~D~i~~~~vl  229 (309)
                      ++.+|||||||+|.++..++++.. .+ ++++|.++++..+++       .++++++.+|+.+. +|.  .|+|+.....
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga-~~-V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGA-KH-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC-SE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC-CE-EEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            357999999999999988887643 36 999999766655443       37899999999775 554  4999887666


Q ss_pred             hcCCh-hHHHHHHHHHHHhcCCCcEEE
Q 021707          230 ATWTD-DECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       230 h~~~d-~~~~~iL~~~~~aL~pgG~l~  255 (309)
                      |.... .....++..+.+.|+|||+++
T Consensus       116 ~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         116 YFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeccchhHHHHHHHHHhccCCCeEEE
Confidence            55443 345678999999999999875

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1e-09  Score=95.34  Aligned_cols=103  Identities=15%  Similarity=0.088  Sum_probs=73.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CC--------------------------
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PG--------------------------  205 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~r--------------------------  205 (309)
                      ..++.+|||||||+|.+....+..... + ++++|. +.+++.+++.     ..                          
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~-v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  129 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFE-D-ITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  129 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCS-E-EEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCC-e-EEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence            345689999999999887655544433 5 999998 6777766421     00                          


Q ss_pred             -----ceEEeCCCCCC-------C-CC-CceeeehhhhhcCCh--hHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          206 -----VTHIGGDMFNS-------I-PA-ANAIFMKWVLATWTD--DECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       206 -----i~~~~~d~~~~-------~-p~-~D~i~~~~vlh~~~d--~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                           -.....|..++       . +. .|+|++.++||+.+.  ++-.++|+++++.|||||.|++.+....
T Consensus       130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~  202 (263)
T d2g72a1         130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE  202 (263)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred             hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence                 12334465543       1 12 499999999998763  3578999999999999999999887544

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.72  E-value=6.1e-09  Score=87.54  Aligned_cols=99  Identities=23%  Similarity=0.231  Sum_probs=78.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCCC-
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIPA-  219 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p~-  219 (309)
                      ...+++.++ .++..+|||||||+|..+..+++.. +.+ ++++|. +++++.+++      .++++++.+|.++-+|. 
T Consensus        67 ~a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~-g~~-V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~  143 (215)
T d1jg1a_          67 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIV-KTD-VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK  143 (215)
T ss_dssp             HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH-CSC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             HHHHHHhhc-cCccceEEEecCCCChhHHHHHHhh-Cce-eEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCccc
Confidence            345677776 8888999999999999999888765 355 888887 667776654      38999999999876554 


Q ss_pred             --CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          220 --ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       220 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                        .|.|++.-.++..|+.        +.+.|+|||++++.
T Consensus       144 ~pfD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         144 APYDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP  175 (215)
T ss_dssp             CCEEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             CcceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence              3999999888877754        45679999999873

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=9.7e-09  Score=91.06  Aligned_cols=96  Identities=19%  Similarity=0.179  Sum_probs=72.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCC-------CCCCceEEeCCCCCC-CCC--Cceeeehh
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAP-------SIPGVTHIGGDMFNS-IPA--ANAIFMKW  227 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~-------~~~ri~~~~~d~~~~-~p~--~D~i~~~~  227 (309)
                      ..++.+|||||||+|.++..+++..+ .+ ++++|..+....++       ..++|+++.+|+.+. .|.  .|+|++..
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~-V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~  110 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGA-KK-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW  110 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC-SE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCC-CE-EEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEee
Confidence            33567899999999999999998765 36 99999854332222       138899999999875 443  49999877


Q ss_pred             hhhcCChh-HHHHHHHHHHHhcCCCcEEE
Q 021707          228 VLATWTDD-ECKLIMENCYKALLAGGKLI  255 (309)
Q Consensus       228 vlh~~~d~-~~~~iL~~~~~aL~pgG~l~  255 (309)
                      ..|....+ ....++....+.|+|||+++
T Consensus       111 ~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         111 MGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            77665544 45577777888999999887

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.69  E-value=1e-08  Score=86.68  Aligned_cols=100  Identities=20%  Similarity=0.210  Sum_probs=77.1

Q ss_pred             HHHHhhcC-CCCCcceEEEecCCccHHHHHHHHhc------CCCceEEEeec-hhHHhhCCCC-----------CCceEE
Q 021707          149 TSVLDSYN-GFKGVKRLVDVGGSAGDCLRMILQKH------HFICEGINFDL-PEVVGEAPSI-----------PGVTHI  209 (309)
Q Consensus       149 ~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~------p~~~~~~~~D~-p~~~~~a~~~-----------~ri~~~  209 (309)
                      ..+++.+. +..+..+|||||||+|.++..+++..      +..+ ++.+|. +++++.++++           .++.++
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~-V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~  146 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  146 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCE-EEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccE-EEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence            34666652 26778899999999999998888763      4457 999998 6667666542           689999


Q ss_pred             eCCCCCCCCC---CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          210 GGDMFNSIPA---ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       210 ~~d~~~~~p~---~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .+|..+..+.   .|.|++...+++.|+.        +.+.|+|||++++.
T Consensus       147 ~~d~~~~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         147 EGDGRKGYPPNAPYNAIHVGAAAPDTPTE--------LINQLASGGRLIVP  189 (223)
T ss_dssp             ESCGGGCCGGGCSEEEEEECSCBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             ecccccccccccceeeEEEEeechhchHH--------HHHhcCCCcEEEEE
Confidence            9999876543   4999999998877753        56789999999874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.65  E-value=7.9e-09  Score=85.33  Aligned_cols=115  Identities=19%  Similarity=0.203  Sum_probs=86.8

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCC-----
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNS-----  216 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~-----  216 (309)
                      ...+++.+. ......++|++||+|.++..+++++|+.+ ++++|. +.+++.+++     .+|++++.++|.+.     
T Consensus        12 l~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~-vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~   89 (192)
T d1m6ya2          12 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCR-IIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK   89 (192)
T ss_dssp             HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred             HHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCe-EEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence            456777775 66778999999999999999999999999 999999 788887764     37899999988642     


Q ss_pred             -CC--CCceeeeh-----hhhhcC--ChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          217 -IP--AANAIFMK-----WVLATW--TDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       217 -~p--~~D~i~~~-----~vlh~~--~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                       ++  ..|.|++-     +-+-.-  .-....+.|..+.+.|+|||+++++.+-..++
T Consensus        90 ~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Ed  147 (192)
T d1m6ya2          90 TLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLED  147 (192)
T ss_dssp             HTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHH
T ss_pred             HcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHH
Confidence             22  23776642     222110  01234688999999999999999998766554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=4.2e-08  Score=84.71  Aligned_cols=97  Identities=14%  Similarity=0.009  Sum_probs=75.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC--Cceeeehhh
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA--ANAIFMKWV  228 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~--~D~i~~~~v  228 (309)
                      .++.+|||+|||+|.++..+++. +..+ ++++|+ |..++.+++       .++|+++.+|.++..++  +|.|+|...
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~-V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p  183 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVY-GKAK-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  183 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHH-TCCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             CCccEEEECcceEcHHHHHHHHh-CCcE-EEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence            45789999999999999999976 4567 999998 666666654       27899999999886554  598887532


Q ss_pred             hhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          229 LATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       229 lh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                          +  ...+.|..+.+.|+|||.|.+.+.+..+
T Consensus       184 ----~--~~~~~l~~a~~~l~~gG~lh~~~~~~~~  212 (260)
T d2frna1         184 ----V--RTHEFIPKALSIAKDGAIIHYHNTVPEK  212 (260)
T ss_dssp             ----S--SGGGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred             ----C--chHHHHHHHHhhcCCCCEEEEEeccccc
Confidence                1  2246788888999999999887765443

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.43  E-value=1.3e-07  Score=69.83  Aligned_cols=73  Identities=19%  Similarity=0.237  Sum_probs=54.2

Q ss_pred             hhhhhhhhhhcCC---CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccC----ceEEcChhchhhhcC
Q 021707            5 ECRDGRKKVRLAN---TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGE----RKYSLTEIGKSLVTD   77 (309)
Q Consensus         5 ~~~~g~~~~~l~~---~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~----~~y~~t~~~~~l~~~   77 (309)
                      ..+||++|.+...   .++|..|||.+++..+.-.+..|.|+||+|++.|+|.+......+    ..|.+||.++.|+++
T Consensus        27 AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~~dg~~~~~Y~LTpvsk~Lv~d  106 (107)
T d1kyza1          27 ALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKN  106 (107)
T ss_dssp             HHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHSCC
T ss_pred             HHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeecCCCCCeeeEEecchhHHhhcCC
Confidence            5689999988654   378999999999221111245799999999999999765321112    369999999999976

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.29  E-value=2e-07  Score=73.68  Aligned_cols=93  Identities=8%  Similarity=0.019  Sum_probs=66.3

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCC--C-CC-Cceeeehh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNS--I-PA-ANAIFMKW  227 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~--~-p~-~D~i~~~~  227 (309)
                      ++.+|||+|||+|.++.+.+.+... + ++.+|. +.+++.+++       .++++++.+|.++.  . .. .|+|++--
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~-~-v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP   91 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMS-A-AVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP   91 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCC-E-EEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcc-e-eeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEech
Confidence            4679999999999999999888654 6 999998 666665543       27899999998664  2 22 59998742


Q ss_pred             hhhcCChhHHHHHHHHHHH--hcCCCcEEEEe
Q 021707          228 VLATWTDDECKLIMENCYK--ALLAGGKLIAC  257 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~--aL~pgG~l~i~  257 (309)
                      .   +........|..+.+  .|+|+|.+++-
T Consensus        92 P---y~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          92 P---YAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             S---SHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             h---hccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence            1   123344566666654  48899977653

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.26  E-value=6.7e-07  Score=66.22  Aligned_cols=74  Identities=28%  Similarity=0.354  Sum_probs=53.7

Q ss_pred             hhhhhhhhhhcCCC----CCCHHHHHHHhCc-CCCCC-cchHHHHHHHHHcCCceeeecccccC----ceEEcChhchhh
Q 021707            5 ECRDGRKKVRLANT----PLSVSQILTCILP-SGGGD-AENLQCILRLLTSYGVFSEHREFRGE----RKYSLTEIGKSL   74 (309)
Q Consensus         5 ~~~~g~~~~~l~~~----~~t~~eLA~~~~~-~~g~~-~~~l~rlL~~L~~~gll~~~~~~~~~----~~y~~t~~~~~l   74 (309)
                      ..+||+++.+...|    ++|.+|||.++|. +++.+ +..|.|+||.|++.|+|........+    ..|.+||.++.|
T Consensus        26 AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~~~~~~~~g~~e~~Y~Ltpvsk~L  105 (110)
T d1fp1d1          26 AIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYL  105 (110)
T ss_dssp             HHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTGGGG
T ss_pred             HHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccccccccCCCCCeeeEEecchhhHhh
Confidence            56889999886543    4799999999821 11111 34799999999999999755421112    269999999999


Q ss_pred             hcCC
Q 021707           75 VTDA   78 (309)
Q Consensus        75 ~~~~   78 (309)
                      ++++
T Consensus       106 v~de  109 (110)
T d1fp1d1         106 VPDE  109 (110)
T ss_dssp             STTC
T ss_pred             cCCC
Confidence            9874

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.20  E-value=4.1e-07  Score=74.95  Aligned_cols=65  Identities=17%  Similarity=0.137  Sum_probs=52.2

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-CCceEEeCCCCCCCCCCceeeehh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-PGVTHIGGDMFNSIPAANAIFMKW  227 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-~ri~~~~~d~~~~~p~~D~i~~~~  227 (309)
                      +.+|||+|||+|.+++.++...+. + ++++|. +.+++.++++ .+++++.+|+.+.....|+|+++-
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga~-~-V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~NP  115 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGAE-S-VTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMNP  115 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTBS-E-EEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEECC
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCCC-c-ccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeCc
Confidence            579999999999999888876543 6 999998 6777777764 789999999866433469999863

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.19  E-value=2.3e-07  Score=77.63  Aligned_cols=100  Identities=13%  Similarity=0.132  Sum_probs=71.2

Q ss_pred             CcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCCC---------Cc
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIPA---------AN  221 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p~---------~D  221 (309)
                      ++.+||+||||+|..+..+++..+ +.+ ++.+|. +...+.+++       .++|+++.||..+.+|.         .|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~-v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D  134 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGAR-LLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  134 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccE-EEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence            467999999999999999999875 567 999998 666666653       27899999998653321         38


Q ss_pred             eeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          222 AIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       222 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      +|++-+   +.........+.++.+.|+|||.|++-+..++.
T Consensus       135 ~ifiD~---~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g  173 (214)
T d2cl5a1         135 MVFLDH---WKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG  173 (214)
T ss_dssp             EEEECS---CGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCC
T ss_pred             eeeecc---cccccccHHHHHHHhCccCCCcEEEEeCcCCCC
Confidence            887652   222222233466777889999976666555654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.16  E-value=6.1e-07  Score=79.70  Aligned_cols=100  Identities=15%  Similarity=0.087  Sum_probs=72.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC---C---C-CCcee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS---I---P-AANAI  223 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~---~---p-~~D~i  223 (309)
                      +++.+|||+|||+|.++..++.... .+ ++.+|. +..++.++++       ++++++.+|.++.   +   . ..|+|
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~-V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGA-DE-VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCC-cE-EEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            4578999999999999999987753 36 999998 6677776542       6889999998753   1   1 24999


Q ss_pred             eehhh---hhcCCh----hHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          224 FMKWV---LATWTD----DECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       224 ~~~~v---lh~~~d----~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      ++.-.   .+.-..    ..-.++++.+.+.|+|||.|+.+...
T Consensus       222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            97322   111111    12356889999999999999887533

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.10  E-value=5.1e-07  Score=79.76  Aligned_cols=100  Identities=18%  Similarity=0.145  Sum_probs=74.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-----------CCCceEEeCCCCCC---CCC-Cc
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-----------IPGVTHIGGDMFNS---IPA-AN  221 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-----------~~ri~~~~~d~~~~---~p~-~D  221 (309)
                      .+++.+||.||+|.|..+.++++..|..+ ++++|+ |.|++.+++           .+|++++.+|.++.   .+. .|
T Consensus        75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~-v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD  153 (312)
T d1uira_          75 HPEPKRVLIVGGGEGATLREVLKHPTVEK-AVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD  153 (312)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred             CCCcceEEEeCCCchHHHHHHHhcCCcce-EEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence            34568999999999999999998888888 999999 777776543           37999999998864   333 49


Q ss_pred             eeeehh--hhhc-CCh--hHHHHHHHHHHHhcCCCcEEEEec
Q 021707          222 AIFMKW--VLAT-WTD--DECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       222 ~i~~~~--vlh~-~~d--~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +|++--  .... -+.  --..+.++.+++.|+|||.++..-
T Consensus       154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            998422  1111 011  113578999999999999887753

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.3e-06  Score=73.09  Aligned_cols=98  Identities=11%  Similarity=0.111  Sum_probs=75.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCC--------CC-C
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSI--------PA-A  220 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~--------p~-~  220 (309)
                      .++.+||+||+|+|..+..+++..| +.+ ++.+|. |+..+.+++       .++++++.||..+..        +. .
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~-i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f  136 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGR-VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  136 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCce-EEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence            4578999999999999999999987 567 999998 555555443       488999999976531        22 4


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      |+|++-+     ........+..+.+.|+|||.|++-+..+.
T Consensus       137 D~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~  173 (219)
T d2avda1         137 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLWR  173 (219)
T ss_dssp             EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred             cEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence            8888743     333456778889999999998888777665

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.97  E-value=2.4e-06  Score=73.70  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=52.7

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCCCC----CCceeeeh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNSIP----AANAIFMK  226 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~~p----~~D~i~~~  226 (309)
                      +..+++|+|||+|..+..++ ++|+.+ +++.|. +..++.++++       .++.++.+|+++..+    ..|+|+.+
T Consensus       110 ~~~~vld~g~GsG~i~~~la-~~~~~~-v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVA-KFSDAI-VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHH-HHSSCE-EEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             cccEEEEeeeeeehhhhhhh-hcccce-eeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence            34689999999999999987 579999 999998 6777776652       688999999988744    24998865

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.94  E-value=5.6e-06  Score=68.21  Aligned_cols=68  Identities=16%  Similarity=0.029  Sum_probs=51.8

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-----CCceEEeCCCCCCCCCCceeeehhhh
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-----PGVTHIGGDMFNSIPAANAIFMKWVL  229 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-----~ri~~~~~d~~~~~p~~D~i~~~~vl  229 (309)
                      .+.+|||+|||+|.++.+++.+.+ .+ ++++|. +.+++.++++     .++++..+|..+.....|+|+++--.
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~-~~-v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGA-KE-VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPF  119 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCC
T ss_pred             CCCEEEECcCcchHHHHHHHHcCC-CE-EEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcc
Confidence            357999999999999998887644 46 999998 6667666542     67889999986654446999986543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.94  E-value=1.7e-06  Score=76.49  Aligned_cols=97  Identities=18%  Similarity=0.113  Sum_probs=70.4

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC------CCceEEeCCCCCC---C---CC-Cceeee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI------PGVTHIGGDMFNS---I---PA-ANAIFM  225 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~------~ri~~~~~d~~~~---~---p~-~D~i~~  225 (309)
                      ++.+|||++||+|.++..++..  ..+ ++.+|. +.+++.++++      ++++++.+|.++.   +   .+ .|+|++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~-V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FRE-VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCc-EEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            4689999999999999998764  345 999998 6677777642      7899999998753   1   22 499997


Q ss_pred             hhhhhcCCh-------hHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          226 KWVLATWTD-------DECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       226 ~~vlh~~~d-------~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      .-.......       ..-.++++.+.+.|+|||.|+....
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            422111111       1235789999999999999887644

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.8e-06  Score=75.14  Aligned_cols=99  Identities=15%  Similarity=0.153  Sum_probs=73.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC-Cce
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA-ANA  222 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~-~D~  222 (309)
                      .+.+.+||-||+|.|..+.++++..+..+ ++++|+ |.|++.+++          .+|++++.+|.++.   .++ .|+
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~-v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVES-VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV  154 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcce-eeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence            45678999999999999999997777777 999998 778877754          38999999998764   233 399


Q ss_pred             eeehhhhhcCChh---HHHHHHHHHHHhcCCCcEEEEec
Q 021707          223 IFMKWVLATWTDD---ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       223 i~~~~vlh~~~d~---~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      |++-- .+.....   -..+.++.+++.|+|||.+++.-
T Consensus       155 Ii~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         155 IITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            98532 1111111   13467999999999999888763

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.92  E-value=2e-06  Score=75.09  Aligned_cols=100  Identities=19%  Similarity=0.216  Sum_probs=73.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC-Ccee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA-ANAI  223 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~-~D~i  223 (309)
                      +++.+||-||+|.|..+.+++++.|..+ ++++|+ |.|++.+++          .+|++++.+|.++.   .+. .|+|
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~-i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEK-AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            4568999999999999999998877777 999999 778877654          38999999998764   233 3999


Q ss_pred             eehhhhhc-CChh--HHHHHHHHHHHhcCCCcEEEEecc
Q 021707          224 FMKWVLAT-WTDD--ECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       224 ~~~~vlh~-~~d~--~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ++--.-.. -+..  -..+.++.+++.|+|||.++..-.
T Consensus       167 i~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~  205 (295)
T d1inla_         167 IIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  205 (295)
T ss_dssp             EEEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence            85321110 0110  125799999999999998887643

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=9.1e-06  Score=69.22  Aligned_cols=70  Identities=7%  Similarity=-0.058  Sum_probs=54.3

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC----C---CC--Cce
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS----I---PA--ANA  222 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~----~---p~--~D~  222 (309)
                      ...++||+|||+|..+..+++++|+.+ ++++|. +..++.|+++       +|+.++..+....    .   ..  .|+
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~-~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWY-FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCcc-ccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            356899999999999999999999999 999999 6777777652       7888887654432    1   12  489


Q ss_pred             eeehhhhh
Q 021707          223 IFMKWVLA  230 (309)
Q Consensus       223 i~~~~vlh  230 (309)
                      |+++--.+
T Consensus       140 ivsNPPY~  147 (250)
T d2h00a1         140 CMCNPPFF  147 (250)
T ss_dssp             EEECCCCC
T ss_pred             EEecCccc
Confidence            88765444

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.86  E-value=4.2e-06  Score=72.47  Aligned_cols=98  Identities=19%  Similarity=0.191  Sum_probs=71.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------------CCCceEEeCCCCCC---C
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------------IPGVTHIGGDMFNS---I  217 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------------~~ri~~~~~d~~~~---~  217 (309)
                      .+++.+||-||+|.|..+.++++ +|..+ ++++|+ |.|++.+++                .+|++++.+|.++.   -
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~-v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~  147 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDE-VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  147 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTT-SCCSE-EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCCCceEEEecCCchHHHHHHHH-hCCce-EEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence            34568999999999999999986 45567 999998 778776642                37999999998653   2


Q ss_pred             CCCceeeehhhhhcCChh---HHHHHHHHHHHhcCCCcEEEEec
Q 021707          218 PAANAIFMKWVLATWTDD---ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       218 p~~D~i~~~~vlh~~~d~---~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      ...|+|++--. ......   -..+.++.+++.|+|||.++..-
T Consensus       148 ~~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         148 RGFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             CCEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            22499985221 111111   12578999999999999887754

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.85  E-value=3e-06  Score=74.42  Aligned_cols=99  Identities=20%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC-Ccee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA-ANAI  223 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~-~D~i  223 (309)
                      +.+.+||-||+|.|..+.++++..|-.+ ++++|+ |.|++.+++          .+|++++.+|.++.   .+. .|+|
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~-v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEK-VTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCE-EEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcce-EEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            4567999999999999999998777667 999999 777776653          28999999998764   233 4999


Q ss_pred             eehhhh--hcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          224 FMKWVL--ATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       224 ~~~~vl--h~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +.--.-  ..-..--..+.++.+++.|+|||.++..-
T Consensus       184 I~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         184 ITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             EECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            853211  10001124578999999999999888874

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.82  E-value=3.7e-06  Score=72.66  Aligned_cols=99  Identities=20%  Similarity=0.167  Sum_probs=73.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC-Ccee
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA-ANAI  223 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~-~D~i  223 (309)
                      .++.+||-||+|.|..+.+++++.|..+ ++++|+ |.|++.+++          .+|++++.+|.++.   .++ .|+|
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~-i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKK-ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSE-EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcce-EEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            4568999999999999999998777777 999999 777776643          38999999998764   233 4998


Q ss_pred             eehhhhhcCC--hhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          224 FMKWVLATWT--DDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       224 ~~~~vlh~~~--d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +.--.-..-+  .--..+.++.+++.|+|||.++..-
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            8532111000  0013478999999999999888764

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.81  E-value=4e-06  Score=73.07  Aligned_cols=101  Identities=18%  Similarity=0.163  Sum_probs=75.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----------CCCceEEeCCCCCC---CCC--Cc
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----------IPGVTHIGGDMFNS---IPA--AN  221 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----------~~ri~~~~~d~~~~---~p~--~D  221 (309)
                      .+++.+||=||+|.|..+.++++..|-.+ ++++|+ |.|++.+++          .+|++++.+|.++.   .++  .|
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~-i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD  156 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASIEQ-IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  156 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCCcceEEecCCchHHHHHHHhccccee-eEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc
Confidence            35678999999999999999998777677 999999 777777654          38999999997653   333  49


Q ss_pred             eeeehhhhhcCCh---hHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          222 AIFMKWVLATWTD---DECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       222 ~i~~~~vlh~~~d---~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      +|+.--. .....   --..+.++.+++.|+|||.++..-..
T Consensus       157 vIi~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         157 AVIVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             EEEECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEEEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            9885211 11111   11357899999999999998887543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.80  E-value=9.1e-06  Score=69.00  Aligned_cols=91  Identities=12%  Similarity=0.194  Sum_probs=69.9

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC----CCceEEeCCCCCC-CCCC
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI----PGVTHIGGDMFNS-IPAA  220 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~----~ri~~~~~d~~~~-~p~~  220 (309)
                      ....+++..+ .....+|||||||+|.++..|++...  + ++++|. +.+++.+++.    ++++++.+|+.+. ++..
T Consensus        17 ii~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~-v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~   92 (245)
T d1yuba_          17 VLNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--Q-VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNK   92 (245)
T ss_dssp             THHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--E-EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCS
T ss_pred             HHHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--c-eeEeeecccchhhhhhhhhhccchhhhhhhhhccccccc
Confidence            4567888875 77889999999999999999999843  5 899998 5556666543    7899999999885 6654


Q ss_pred             -ceeeehhhhhcCChhHHHHHH
Q 021707          221 -NAIFMKWVLATWTDDECKLIM  241 (309)
Q Consensus       221 -D~i~~~~vlh~~~d~~~~~iL  241 (309)
                       +..+.++.-++.+.+-..+++
T Consensus        93 ~~~~vv~NLPY~Ist~il~~~l  114 (245)
T d1yuba_          93 QRYKIVGNIPYHLSTQIIKKVV  114 (245)
T ss_dssp             SEEEEEEECCSSSCHHHHHHHH
T ss_pred             eeeeEeeeeehhhhHHHHHHHh
Confidence             667778888888876433433

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.78  E-value=6e-06  Score=69.35  Aligned_cols=98  Identities=12%  Similarity=0.029  Sum_probs=74.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCCC----------C
Q 021707          159 KGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSIP----------A  219 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~p----------~  219 (309)
                      .++.+||+||+++|..+..+++..| +.+ ++.+|. |...+.|++       .++|+++.||..+.+|          .
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~-v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGK-ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCE-EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcE-EEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            3578999999999999999999987 567 999998 555555543       3789999999865321          2


Q ss_pred             CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccC
Q 021707          220 ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLL  262 (309)
Q Consensus       220 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~  262 (309)
                      .|+|++-.     ........+..+.+.|+|||.|++-+.++.
T Consensus       137 fD~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNvl~~  174 (227)
T d1susa1         137 YDFIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNTLWN  174 (227)
T ss_dssp             BSEEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETTTGG
T ss_pred             eeEEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccCCCC
Confidence            49988742     334456888889999999997777776654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=4.1e-06  Score=67.98  Aligned_cols=91  Identities=8%  Similarity=-0.005  Sum_probs=64.6

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCC---CC-Cceeeehhhh
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSI---PA-ANAIFMKWVL  229 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~---p~-~D~i~~~~vl  229 (309)
                      ..+|||++||+|.++.+.+.+... + ++.+|. +.+++.+++      ..+++++.+|.++.+   .. .|+|++---.
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~-~-v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY  121 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAA-G-ATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-E-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             hhhhhhhhccccceeeeEEecCcc-e-eEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence            468999999999999999998754 5 899998 556665543      267899999977542   22 4999986432


Q ss_pred             hcCChhHHHHHHHHHHH--hcCCCcEEEE
Q 021707          230 ATWTDDECKLIMENCYK--ALLAGGKLIA  256 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~--aL~pgG~l~i  256 (309)
                         ......+++..+.+  .|+|+|.+++
T Consensus       122 ---~~~~~~~~l~~l~~~~~L~~~~iIii  147 (183)
T d2fpoa1         122 ---RRGLLEETINLLEDNGWLADEALIYV  147 (183)
T ss_dssp             ---STTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ---ccchHHHHHHHHHHCCCCCCCeEEEE
Confidence               22334466666655  4889886665

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.70  E-value=3.3e-06  Score=67.83  Aligned_cols=93  Identities=14%  Similarity=0.078  Sum_probs=58.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEEeCCCCCC----C-CCCceee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHIGGDMFNS----I-PAANAIF  224 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~~~d~~~~----~-p~~D~i~  224 (309)
                      ...+.+|||+|||+|.++.+++.+.  .+ ++.+|. +.+++.++++       .++.....|.+..    . ...|+|+
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~-vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If  115 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEG--WE-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAF  115 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTT--CE-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhcc--ch-hhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeE
Confidence            4466799999999999999988874  56 889998 6777766542       4454444443321    1 1249998


Q ss_pred             ehhhhhcCChhHHHHHHHHHH--HhcCCCcEEEEe
Q 021707          225 MKWVLATWTDDECKLIMENCY--KALLAGGKLIAC  257 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~--~aL~pgG~l~i~  257 (309)
                      +.=-. .....   +++..+.  ..|+|||.+++.
T Consensus       116 ~DPPY-~~~~~---~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         116 MAPPY-AMDLA---ALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             ECCCT-TSCTT---HHHHHHHHHTCEEEEEEEEEE
T ss_pred             Ecccc-ccCHH---HHHHHHHHcCCcCCCeEEEEE
Confidence            74221 12212   2333333  457899976653

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.70  E-value=1.4e-05  Score=69.97  Aligned_cols=101  Identities=14%  Similarity=0.126  Sum_probs=71.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC--------CCceEEeCCCCCCC------C-CCc
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI--------PGVTHIGGDMFNSI------P-AAN  221 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~--------~ri~~~~~d~~~~~------p-~~D  221 (309)
                      ..++.+|||+.||+|.++..++..  ..+ ++.+|. +..++.++++        .+++++++|.++.+      . ..|
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~-V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD  206 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAA--GAE-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYD  206 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHT--TCE-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhC--CCe-EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCC
Confidence            345679999999999999998876  457 999998 6677777642        47999999998642      1 249


Q ss_pred             eeeeh---hhhh----cCC-hhHHHHHHHHHHHhcCCCcEEEEecccc
Q 021707          222 AIFMK---WVLA----TWT-DDECKLIMENCYKALLAGGKLIACEPVL  261 (309)
Q Consensus       222 ~i~~~---~vlh----~~~-d~~~~~iL~~~~~aL~pgG~l~i~e~~~  261 (309)
                      +|++-   +.-.    .|. ......+++.+.+.|+|||.+++.-...
T Consensus       207 ~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         207 IILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             EEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             EEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence            99972   1111    111 2234567788889999999777665443

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.63  E-value=1.1e-05  Score=71.06  Aligned_cols=99  Identities=10%  Similarity=0.089  Sum_probs=68.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC--------CCCceEEeCCCCCCC------CC-Cc
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS--------IPGVTHIGGDMFNSI------PA-AN  221 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~--------~~ri~~~~~d~~~~~------p~-~D  221 (309)
                      ...+.+|||+.||+|.+++.++... ..+ ++.+|. +..++.+++        ..+++++.+|.++.+      .. .|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~-V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD  219 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMA-TTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYD  219 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTT-BSE-EEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCC-Cce-EEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence            4457899999999999998877643 234 899998 555655543        257999999997642      22 49


Q ss_pred             eeeehh---hhh--c-CC-hhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          222 AIFMKW---VLA--T-WT-DDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       222 ~i~~~~---vlh--~-~~-d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +|++--   .-+  . +. ..+-.++++.+.+.|+|||.|+..-
T Consensus       220 ~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         220 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            998731   100  1 11 1234679999999999999888764

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.58  E-value=5.2e-05  Score=63.73  Aligned_cols=91  Identities=7%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC----CCCCceEEeCCCCCC-CCCC
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP----SIPGVTHIGGDMFNS-IPAA  220 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~----~~~ri~~~~~d~~~~-~p~~  220 (309)
                      ....+++..+ .....+||+||||+|.++..|++...  + ++++|. +.+++..+    ..++++++.+|+++. ++..
T Consensus         9 i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~--~-v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~   84 (235)
T d1qama_           9 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCN--F-VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN   84 (235)
T ss_dssp             HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSS--E-EEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred             HHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcC--c-eEEEeeccchHHHHHHHhhcccchhhhhhhhhhcccccc
Confidence            3566777775 77889999999999999999998753  5 888887 44444433    358999999999985 5654


Q ss_pred             -ceeeehhhhhcCChhHHHHHHHHHH
Q 021707          221 -NAIFMKWVLATWTDDECKLIMENCY  245 (309)
Q Consensus       221 -D~i~~~~vlh~~~d~~~~~iL~~~~  245 (309)
                       ...+.++.-++.+.    .+|.++.
T Consensus        85 ~~~~vv~NLPYnIss----~il~~ll  106 (235)
T d1qama_          85 QSYKIFGNIPYNIST----DIIRKIV  106 (235)
T ss_dssp             CCCEEEEECCGGGHH----HHHHHHH
T ss_pred             ccceeeeeehhhhhH----HHHHHHH
Confidence             56666777665554    3555554

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=3.9e-05  Score=63.23  Aligned_cols=92  Identities=10%  Similarity=0.043  Sum_probs=70.5

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeech----hHHhhCC---CCCCceEEeCCCCCCCCC--Cceeeehhhhhc
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP----EVVGEAP---SIPGVTHIGGDMFNSIPA--ANAIFMKWVLAT  231 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p----~~~~~a~---~~~ri~~~~~d~~~~~p~--~D~i~~~~vlh~  231 (309)
                      ..+|+|||+|.|.-++-++-.+|+.+ ++.+|..    ..+..+.   ..+++++++....+..+.  .|+|+++-+   
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~-~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~---  141 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAH-FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF---  141 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred             CCceeeeeccCCceeeehhhhcccce-EEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhh---
Confidence            46899999999999999999999999 9999972    2233221   136899999888765333  598887655   


Q ss_pred             CChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          232 WTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       232 ~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                       .+  ...++.-+...++++|++++.-.
T Consensus       142 -~~--~~~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         142 -AS--LNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             -SS--HHHHHHHHTTSEEEEEEEEEEES
T ss_pred             -cC--HHHHHHHHHHhcCCCcEEEEECC
Confidence             22  34788888888999999998864

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.55  E-value=2.5e-05  Score=63.16  Aligned_cols=94  Identities=10%  Similarity=0.033  Sum_probs=66.2

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC-------CCCceEEeCCCCCCC------C-CCceee
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS-------IPGVTHIGGDMFNSI------P-AANAIF  224 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~-------~~ri~~~~~d~~~~~------p-~~D~i~  224 (309)
                      .+.+|||+.||+|.++.+.+.+... + ++.+|. +.++..+++       .++++++.+|.++.+      . ..|+|+
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~-~-v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf  118 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD-K-SICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  118 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS-E-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEcccccccccceeeecchh-H-HHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence            4689999999999999999998643 5 899998 555555543       268999999986531      1 249998


Q ss_pred             ehhhhhcCChhHHHHHHHHHHH--hcCCCcEEEEecc
Q 021707          225 MKWVLATWTDDECKLIMENCYK--ALLAGGKLIACEP  259 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~--aL~pgG~l~i~e~  259 (309)
                      +-=-.   ......++|..+.+  .|+|+|.++ +|.
T Consensus       119 lDPPY---~~~~~~~~l~~i~~~~~L~~~giIi-~E~  151 (182)
T d2fhpa1         119 LDPPY---AKQEIVSQLEKMLERQLLTNEAVIV-CET  151 (182)
T ss_dssp             ECCCG---GGCCHHHHHHHHHHTTCEEEEEEEE-EEE
T ss_pred             echhh---hhhHHHHHHHHHHHCCCCCCCEEEE-EEc
Confidence            74321   12334577887765  488998554 554

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.52  E-value=0.00011  Score=59.33  Aligned_cols=112  Identities=24%  Similarity=0.315  Sum_probs=80.6

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC--CCCceEEeCCCCCC------C-
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS--IPGVTHIGGDMFNS------I-  217 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~--~~ri~~~~~d~~~~------~-  217 (309)
                      ...+++.+. ...+..++|+.+|.|.++.+++++  +.+ ++++|. |.++..+++  .+|++++.+++-+.      . 
T Consensus         7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~-viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~   82 (182)
T d1wg8a2           7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGR-VIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALG   82 (182)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCc-EEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcC
Confidence            456777775 667789999999999999999997  457 999998 777776654  47999999887542      1 


Q ss_pred             -CCCceeee-----hhhhhcCCh--hHHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          218 -PAANAIFM-----KWVLATWTD--DECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       218 -p~~D~i~~-----~~vlh~~~d--~~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                       ...|.|++     ++-+.+-..  ......|....+.|+|||++++..+-..+
T Consensus        83 ~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~E  136 (182)
T d1wg8a2          83 VERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLE  136 (182)
T ss_dssp             CSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHH
T ss_pred             CCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccch
Confidence             12366664     333332211  12456788999999999999998875444

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.46  E-value=0.00019  Score=58.77  Aligned_cols=107  Identities=14%  Similarity=0.131  Sum_probs=70.2

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechh-HHhhCCCCCCceEEeCCCCCCCCC--Cceee
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPE-VVGEAPSIPGVTHIGGDMFNSIPA--ANAIF  224 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~-~~~~a~~~~ri~~~~~d~~~~~p~--~D~i~  224 (309)
                      ++-+++.+. ..++.+|+|.|||+|.++..+.++++....+.++|..+ .+..+   .+..+..+|++...+.  .|+++
T Consensus         8 ~~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---~~~~~~~~~~~~~~~~~~fd~ii   83 (223)
T d2ih2a1           8 VDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLIL   83 (223)
T ss_dssp             HHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEE
T ss_pred             HHHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---ccceeeeeehhccccccccceec
Confidence            344555554 55678999999999999999998877643389999843 22222   3457777887765322  37777


Q ss_pred             ehhhhhcC--Ch-------------------------hHHHHHHHHHHHhcCCCcEEEEec
Q 021707          225 MKWVLATW--TD-------------------------DECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       225 ~~~vlh~~--~d-------------------------~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      .+......  ..                         .-...++.++.+.|+|||++.++=
T Consensus        84 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~  144 (223)
T d2ih2a1          84 GNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV  144 (223)
T ss_dssp             ECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence            65332110  00                         012456788899999999987663

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.43  E-value=5.2e-05  Score=66.69  Aligned_cols=100  Identities=14%  Similarity=0.151  Sum_probs=69.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhc-----CCCceEEEeec-hhHHhhCCC-----CCCceEEeCCCCCCCCC--Cceee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKH-----HFICEGINFDL-PEVVGEAPS-----IPGVTHIGGDMFNSIPA--ANAIF  224 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~~D~-p~~~~~a~~-----~~ri~~~~~d~~~~~p~--~D~i~  224 (309)
                      .....+|+|.|||+|.++.++.++.     ++.+ ++++|. +.++..++.     .....+..+|.+...+.  .|+|+
T Consensus       115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~-~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi  193 (328)
T d2f8la1         115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVH-ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVI  193 (328)
T ss_dssp             TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEE
T ss_pred             CCCCCEEEeCCCCcchhHHHHHHHHHhccCccce-EEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccc
Confidence            3456799999999999999987643     3445 899998 556655543     26778888888776443  59999


Q ss_pred             ehhhhhcCChh----------------HHHHHHHHHHHhcCCCcEEEEec
Q 021707          225 MKWVLATWTDD----------------ECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       225 ~~~vlh~~~d~----------------~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      ++-........                --.-.+..+.+.|+|||+++++=
T Consensus       194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~  243 (328)
T d2f8la1         194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV  243 (328)
T ss_dssp             EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence            87443211111                11346899999999999876543

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.28  E-value=0.00016  Score=49.36  Aligned_cols=47  Identities=17%  Similarity=0.143  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIG   71 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~   71 (309)
                      ++|+|+.|||+.+    |++...+.|+|..|...|++++++    +++|++++-.
T Consensus        18 ~~~~s~~eia~~~----~~~~st~~rll~tL~~~g~l~~~~----~g~y~lG~~l   64 (75)
T d1mkma1          18 PGDVSVSEIAEKF----NMSVSNAYKYMVVLEEKGFVLRKK----DKRYVPGYKL   64 (75)
T ss_dssp             SSCBCHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEECT----TSCEEECTHH
T ss_pred             CCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEECC----CCCEeecHHH
Confidence            5789999999999    999999999999999999999986    6889999744

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00055  Score=44.95  Aligned_cols=61  Identities=20%  Similarity=0.131  Sum_probs=51.2

Q ss_pred             CCcchhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcC
Q 021707            1 MEDNECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLT   68 (309)
Q Consensus         1 ~~~~~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t   68 (309)
                      |.+++..+-+.+++-.++..|.+|||+.+    |++...+++-+..|...|+..+...   ...|++.
T Consensus         1 Mk~~~~~~~iL~~L~~~~~~s~~eLa~~l----~vS~~ti~r~i~~L~~~G~~I~~~~---g~GY~L~   61 (63)
T d1biaa1           1 MKDNTVPLKLIALLANGEFHSGEQLGETL----GMSRAAINKHIQTLRDWGVDVFTVP---GKGYSLP   61 (63)
T ss_dssp             CCCCHHHHHHHHHHTTSSCBCHHHHHHHH----TSCHHHHHHHHHHHHHTTCCCEEET---TTEEECS
T ss_pred             CCccHHHHHHHHHHHHCCcCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCcEEEeC---CCeEEeC
Confidence            77888888899988777899999999999    9999999999999999998544431   2358875

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.07  E-value=0.001  Score=53.16  Aligned_cols=104  Identities=21%  Similarity=0.257  Sum_probs=70.0

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeechhHHhhCCCCCCceEEeCCCCCC---------CC-
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDLPEVVGEAPSIPGVTHIGGDMFNS---------IP-  218 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~p~~~~~a~~~~ri~~~~~d~~~~---------~p-  218 (309)
                      ++.+.+.-+.+..+|||+||+.|.++..+.+..+. .+ ++++|+..    ....+++.++.+|+...         .. 
T Consensus        12 EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~-v~~vDl~~----~~~i~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR-IIACDLLP----MDPIVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCE-EEEEESSC----CCCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             HHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccce-EEEeeccc----ccccCCceEeecccccchhhhhhhhhccC
Confidence            45566653567789999999999999998887655 55 89999744    23457889999998753         11 


Q ss_pred             -CCceeeehhhhhc---CC-h-----hHHHHHHHHHHHhcCCCcEEEEec
Q 021707          219 -AANAIFMKWVLAT---WT-D-----DECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       219 -~~D~i~~~~vlh~---~~-d-----~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                       ..|+|+.=....-   .. |     +-+...|.-+.+.|++||.+++-=
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~  136 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV  136 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEE
Confidence             2488774322111   11 1     124455666788899999888654

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.82  E-value=0.0021  Score=53.47  Aligned_cols=103  Identities=15%  Similarity=0.077  Sum_probs=65.9

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHh----cCCCceEEEeech-hHHhhC-CCCCCceEEeCCCCCC-----C
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQK----HHFICEGINFDLP-EVVGEA-PSIPGVTHIGGDMFNS-----I  217 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~~D~p-~~~~~a-~~~~ri~~~~~d~~~~-----~  217 (309)
                      +.++..+    ++.+||+||++.|..+..++..    .++.+ ++++|.. ...... ...+||+++.+|....     .
T Consensus        73 ~eli~~~----KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~k-I~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l  147 (232)
T d2bm8a1          73 HDMLWEL----RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQ-VIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHL  147 (232)
T ss_dssp             HHHHHHH----CCSEEEEECCTTSHHHHHHHHHHHHTTCCCE-EEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGG
T ss_pred             HHHHHHh----CCCEEEEECCCCchHHHHHHHHHHhcCCCce-EEecCcChhhhhhhhccccceeeeecccccHHHHHHH
Confidence            3445454    2578999999999876655533    36778 9999983 222222 2348999999997654     1


Q ss_pred             CC--CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          218 PA--ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       218 p~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      .+  .|+|++= .-|..  +.+..-+ +....|+|||.+++-|..
T Consensus       148 ~~~~~dlIfID-~~H~~--~~v~~~~-~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         148 REMAHPLIFID-NAHAN--TFNIMKW-AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             SSSCSSEEEEE-SSCSS--HHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred             HhcCCCEEEEc-CCcch--HHHHHHH-HHhcccCcCCEEEEEcCC
Confidence            22  3766653 22532  2223334 466889999999888875

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.65  E-value=0.00051  Score=57.49  Aligned_cols=96  Identities=16%  Similarity=0.156  Sum_probs=69.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcCCCceEEEeech----hHHhhCCC---CCCceEEeCCCCC-----CCCC-Cceee
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLP----EVVGEAPS---IPGVTHIGGDMFN-----SIPA-ANAIF  224 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p----~~~~~a~~---~~ri~~~~~d~~~-----~~p~-~D~i~  224 (309)
                      +....+++|||+|.|.-++-++-.+|+.+ ++.+|..    ..+..+..   ..+++++.....+     ...+ .|+|+
T Consensus        68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~-v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~  146 (239)
T d1xdza_          68 FNQVNTICDVGAGAGFPSLPIKICFPHLH-VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT  146 (239)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             ccCCCeEEeecCCCchHHHHHHHhCCCcc-ceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEE
Confidence            34567999999999999999999999999 9999972    23332221   3677777764421     1222 49998


Q ss_pred             ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      ++-+    .  ....++.-+...+++||++++.-.-
T Consensus       147 sRAv----a--~l~~ll~~~~~~l~~~g~~i~~KG~  176 (239)
T d1xdza_         147 ARAV----A--RLSVLSELCLPLVKKNGLFVALKAA  176 (239)
T ss_dssp             EECC----S--CHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             Ehhh----h--CHHHHHHHHhhhcccCCEEEEECCC
Confidence            8754    2  2357899999999999999988654

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00065  Score=57.35  Aligned_cols=91  Identities=10%  Similarity=0.091  Sum_probs=63.0

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC----CCCceEEeCCCCCC-CCC-
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS----IPGVTHIGGDMFNS-IPA-  219 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~----~~ri~~~~~d~~~~-~p~-  219 (309)
                      ....+++..+ ..+...|++||||.|.++..|++...  + ++++|. +.+++..++    .++++++.+|+.+. ++. 
T Consensus         9 ~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~--~-v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~   84 (252)
T d1qyra_           9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLD--Q-LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGEL   84 (252)
T ss_dssp             HHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCS--C-EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHH
T ss_pred             HHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCC--c-eEEEEeccchhHHHHHHhhhccchhHHhhhhhhhccccc
Confidence            3456777775 67788999999999999999998753  4 888888 455554433    37899999999874 221 


Q ss_pred             -----CceeeehhhhhcCChhHHHHHHHHHH
Q 021707          220 -----ANAIFMKWVLATWTDDECKLIMENCY  245 (309)
Q Consensus       220 -----~D~i~~~~vlh~~~d~~~~~iL~~~~  245 (309)
                           .-+.+..+.-++.+.    .||.++.
T Consensus        85 ~~~~~~~~~vvgNlPY~Iss----~Il~~l~  111 (252)
T d1qyra_          85 AEKMGQPLRVFGNLPYNIST----PLMFHLF  111 (252)
T ss_dssp             HHHHTSCEEEEEECCTTTHH----HHHHHHH
T ss_pred             ccccCCCeEEEecchHHHHH----HHHHHhc
Confidence                 135566666655543    3454443

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.57  E-value=0.005  Score=51.29  Aligned_cols=105  Identities=10%  Similarity=-0.066  Sum_probs=64.5

Q ss_pred             HHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHh---hCCC---CCCceEEeCCCCCCCC-C-Cc
Q 021707          150 SVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVG---EAPS---IPGVTHIGGDMFNSIP-A-AN  221 (309)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~---~a~~---~~ri~~~~~d~~~~~p-~-~D  221 (309)
                      .+.+.+- +....+|||+|||.|.++..+++..+..+ +.++++-.-..   ...+   .+-+++..++.....+ . +|
T Consensus        57 ~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~-V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D  134 (257)
T d2p41a1          57 WFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVRE-VKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCD  134 (257)
T ss_dssp             HHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEE-EEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCS
T ss_pred             HHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCc-eeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCC
Confidence            3445553 66778999999999999999998866555 66666511011   1111   1335666665444433 3 59


Q ss_pred             eeeehhhhhcCC----hhHHHHHHHHHHHhcCCCcEEEE
Q 021707          222 AIFMKWVLATWT----DDECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       222 ~i~~~~vlh~~~----d~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                      +|++=-.-+.-+    .....++|.-+.+.|+|||-+++
T Consensus       135 ~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         135 TLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             EEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             EEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence            988754322111    12345777778899999997665

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.011  Score=51.59  Aligned_cols=102  Identities=15%  Similarity=0.182  Sum_probs=81.4

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC---------------------------CCCceEEeCCC
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS---------------------------IPGVTHIGGDM  213 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~---------------------------~~ri~~~~~d~  213 (309)
                      ...||-+|||.=.....+...+|+++ .+=+|+|++++..++                           .++.++++.|+
T Consensus        97 ~~QVV~LGaG~DTr~~Rl~~~~~~~~-~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL  175 (328)
T d1rjda_          97 KVQVVNLGCGSDLRMLPLLQMFPHLA-YVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  175 (328)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEE-EEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CcEEEEeCCccchHHHHhhccCCCcE-EEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence            35799999999999999999999988 999999988764321                           26789999998


Q ss_pred             CCC--C---------CCC-ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          214 FNS--I---------PAA-NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       214 ~~~--~---------p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      .+.  .         +.. =+++.=.+|.+++++++.++|+.+.+..+ ++.+++.|++.+..
T Consensus       176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~  237 (328)
T d1rjda_         176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQ  237 (328)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCS
T ss_pred             CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCC
Confidence            753  1         111 25666789999999999999999998874 67899999997643

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=96.17  E-value=0.0008  Score=53.88  Aligned_cols=95  Identities=11%  Similarity=0.013  Sum_probs=60.7

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC--------CCCceEEeCCCCCC------CCCCceeee
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS--------IPGVTHIGGDMFNS------IPAANAIFM  225 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~--------~~ri~~~~~d~~~~------~p~~D~i~~  225 (309)
                      ..+|||+-||+|.++.+.+.+... + ++.+|. +..+...++        .....++..|.++.      .+..|+|++
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA~-~-v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQAK-K-VTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCS-E-EEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cceEeecccCccceeeeeeeecce-e-eEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            368999999999999999999644 5 899998 444443332        23566776664431      122498887


Q ss_pred             hhhhhcCChhHHHHHHHHHHH--hcCCCcEEEEecccc
Q 021707          226 KWVLATWTDDECKLIMENCYK--ALLAGGKLIACEPVL  261 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~--aL~pgG~l~i~e~~~  261 (309)
                      -=-- .  .....++|..+.+  .|+++|.+++ |.-.
T Consensus       122 DPPY-~--~~~~~~~l~~l~~~~~L~~~~liii-E~~~  155 (183)
T d2ifta1         122 DPPF-H--FNLAEQAISLLCENNWLKPNALIYV-ETEK  155 (183)
T ss_dssp             CCCS-S--SCHHHHHHHHHHHTTCEEEEEEEEE-EEES
T ss_pred             chhH-h--hhhHHHHHHHHHHhCCcCCCcEEEE-EecC
Confidence            4322 1  2234567777765  5788885555 5433

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=96.13  E-value=0.0058  Score=52.54  Aligned_cols=96  Identities=11%  Similarity=0.095  Sum_probs=73.1

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeechhHHhhCCC---------CCCceEEeCCCCCCCC----------CC
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDLPEVVGEAPS---------IPGVTHIGGDMFNSIP----------AA  220 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~p~~~~~a~~---------~~ri~~~~~d~~~~~p----------~~  220 (309)
                      +...||.+|||-=.....+ ...++++ .+=+|+|.+++..++         ..+.++++.|+.++++          ..
T Consensus        89 g~~qvV~LGaGlDTr~~Rl-~~~~~~~-~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~  166 (297)
T d2uyoa1          89 GIRQFVILASGLDSRAYRL-DWPTGTT-VYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA  166 (297)
T ss_dssp             TCCEEEEETCTTCCHHHHS-CCCTTCE-EEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred             CCCeEEEeCcccCChhhhc-CCCcCce-EEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence            3457888999998888776 4456778 889999998875432         2567888888876522          11


Q ss_pred             -ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          221 -NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       221 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                       -+++.-.++++++++++.++|+.+.+...||+.|++-
T Consensus       167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d  204 (297)
T d2uyoa1         167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE  204 (297)
T ss_dssp             CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence             3455667899999999999999999999999987654

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0051  Score=52.39  Aligned_cols=92  Identities=15%  Similarity=0.261  Sum_probs=61.3

Q ss_pred             cHHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCC----C---CCCceEEeCCCCCC-C
Q 021707          147 FMTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAP----S---IPGVTHIGGDMFNS-I  217 (309)
Q Consensus       147 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~----~---~~ri~~~~~d~~~~-~  217 (309)
                      ....+++..+ .....+|++||+|.|.++..|+++..  + +++++. +..++..+    .   .++++++.+|+++. +
T Consensus         9 i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~--~-v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~   84 (278)
T d1zq9a1           9 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--K-VVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL   84 (278)
T ss_dssp             HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--E-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred             HHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCC--c-EEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence            3556777775 66778999999999999999999864  5 777877 33333332    2   26899999999985 5


Q ss_pred             CCCceeeehhhhhcCChhHHHHHHHHHHHh
Q 021707          218 PAANAIFMKWVLATWTDDECKLIMENCYKA  247 (309)
Q Consensus       218 p~~D~i~~~~vlh~~~d~~~~~iL~~~~~a  247 (309)
                      |....++ .+.-++.    ...++.++...
T Consensus        85 ~~~~~vV-~NLPY~I----ss~il~~~~~~  109 (278)
T d1zq9a1          85 PFFDTCV-ANLPYQI----SSPFVFKLLLH  109 (278)
T ss_dssp             CCCSEEE-EECCGGG----HHHHHHHHHHC
T ss_pred             hhhhhhh-cchHHHH----HHHHHHHHHhh
Confidence            5544433 3433333    23455555443

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.00  E-value=0.028  Score=49.36  Aligned_cols=106  Identities=14%  Similarity=0.195  Sum_probs=73.5

Q ss_pred             CCcceEEEecCCccHHH-------HH-HHHh--------cCCCceEEEeechh-----HHhhCCCC----CC--ceEEeC
Q 021707          159 KGVKRLVDVGGSAGDCL-------RM-ILQK--------HHFICEGINFDLPE-----VVGEAPSI----PG--VTHIGG  211 (309)
Q Consensus       159 ~~~~~vlDvG~G~G~~~-------~~-l~~~--------~p~~~~~~~~D~p~-----~~~~a~~~----~r--i~~~~~  211 (309)
                      ++.-+|+|+||.+|..+       +. +.++        -|..+ +..=|+|.     +.......    ..  +.-++|
T Consensus        50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~q-vf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpG  128 (359)
T d1m6ex_          50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQ-IFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG  128 (359)
T ss_dssp             SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEE-EEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEES
T ss_pred             CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEE-EEeCCCCcchHHHHHHhccccccCCCCeEEEecCC
Confidence            34568999999999876       33 3222        24556 88888852     33333322    12  456779


Q ss_pred             CCCCC-CCCC--ceeeehhhhhcCCh-------------------------------hHHHHHHHHHHHhcCCCcEEEEe
Q 021707          212 DMFNS-IPAA--NAIFMKWVLATWTD-------------------------------DECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       212 d~~~~-~p~~--D~i~~~~vlh~~~d-------------------------------~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .|+.. +|..  ++++.++.||-++.                               .|-..+|+.=++-|.|||++++.
T Consensus       129 SFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~  208 (359)
T d1m6ex_         129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             chhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            99986 7873  99999999986531                               24456888888999999999998


Q ss_pred             ccccCCCC
Q 021707          258 EPVLLDDS  265 (309)
Q Consensus       258 e~~~~~~~  265 (309)
                      =.-.++.+
T Consensus       209 ~~gr~~~~  216 (359)
T d1m6ex_         209 ILGRRSED  216 (359)
T ss_dssp             EEECSSSS
T ss_pred             EeccCCCC
Confidence            77766643

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.96  E-value=0.0017  Score=46.38  Aligned_cols=66  Identities=21%  Similarity=0.237  Sum_probs=51.8

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhh
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLV   75 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~   75 (309)
                      ..+.+...+..++++|+.|||+.+    ++++..+.+.|+.|...|+|+.....  ...-.|++|+.++.+.
T Consensus        17 ~r~~IL~~L~~~~~~~~~eLa~~l----~is~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~~~   84 (100)
T d1ub9a_          17 VRLGIMIFLLPRRKAPFSQIQKVL----DLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEA   84 (100)
T ss_dssp             HHHHHHHHHHHHSEEEHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred             HHHHHHHHhccCCCeeHHHHHHHH----hhccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHHHH
Confidence            345666666667899999999999    99999999999999999999876421  1112599999886544

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0059  Score=53.61  Aligned_cols=113  Identities=11%  Similarity=0.113  Sum_probs=72.4

Q ss_pred             HHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCC------CCCceEEeCCCCCCCC---
Q 021707          149 TSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNSIP---  218 (309)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~~p---  218 (309)
                      +.+++..+ ..+..+|+|+-||+|.++..|++.+.  + ++++|. +..++.|++      ..+++++.+|..+.++   
T Consensus       202 ~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~~--~-V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~  277 (358)
T d1uwva2         202 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQAA--S-VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP  277 (358)
T ss_dssp             HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred             HHHHHhhc-cCCCceEEEecccccccchhcccccc--E-EEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh
Confidence            34445543 55678999999999999999997653  4 999998 666666654      2789999999876532   


Q ss_pred             ---C-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCCCchhhhhhhhcccHhhhc
Q 021707          219 ---A-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDDSNESQRTRALLEGDIFVMT  283 (309)
Q Consensus       219 ---~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~~~~~~~~~~~~~dl~ml~  283 (309)
                         . .|++++-     =|..-+.+.++++.+. +|.-.++|.         ..|.   .-..|+..|.
T Consensus       278 ~~~~~~d~vilD-----PPR~G~~~~~~~l~~~-~~~~ivYVS---------Cnp~---TlaRDl~~l~  328 (358)
T d1uwva2         278 WAKNGFDKVLLD-----PARAGAAGVMQQIIKL-EPIRIVYVS---------CNPA---TLARDSEALL  328 (358)
T ss_dssp             GGTTCCSEEEEC-----CCTTCCHHHHHHHHHH-CCSEEEEEE---------SCHH---HHHHHHHHHH
T ss_pred             hhhccCceEEeC-----CCCccHHHHHHHHHHc-CCCEEEEEe---------CCHH---HHHHHHHHHH
Confidence               1 3777653     2322223455555543 566555553         1111   2357887776

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=95.68  E-value=0.0054  Score=55.38  Aligned_cols=110  Identities=16%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC-------------CCceEEEeec-hhHHhhCC--------CCCC
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH-------------FICEGINFDL-PEVVGEAP--------SIPG  205 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-------------~~~~~~~~D~-p~~~~~a~--------~~~r  205 (309)
                      +..+++.++ .....+|+|-.||+|.++.++.++..             ... ..++|. +.....++        ....
T Consensus       151 v~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~-l~g~E~~~~~~~la~~n~~l~g~~~~~  228 (425)
T d2okca1         151 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA-LHGVDNTPLVVTLASMNLYLHGIGTDR  228 (425)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT-EEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred             hHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhh-hhhhhccHHHHHHHHhhhhhcCCcccc
Confidence            444555554 44568999999999999998877543             234 778887 43433332        1245


Q ss_pred             ceEEeCCCCCCCCC--Cceeeehhhhhc--CC-------------hhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          206 VTHIGGDMFNSIPA--ANAIFMKWVLAT--WT-------------DDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       206 i~~~~~d~~~~~p~--~D~i~~~~vlh~--~~-------------d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ..+..+|.+...+.  .|+|+.+--...  +.             ...-.-.+..+.+.|+|||++.++=+
T Consensus       229 ~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         229 SPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             CSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence            67888898876443  499987644421  11             01124589999999999998776643

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=95.65  E-value=0.0037  Score=41.67  Aligned_cols=45  Identities=16%  Similarity=0.039  Sum_probs=40.6

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .++.++..++++|..|||+.+    |+++..+.+.++.|...|+|.+.+
T Consensus        10 ~Il~~l~~~g~~sr~eLa~~~----glS~~Tv~~~l~~L~~~Glv~e~~   54 (71)
T d1z05a1          10 RVYKLIDQKGPISRIDLSKES----ELAPASITKITRELIDAHLIHETT   54 (71)
T ss_dssp             HHHHHHHHHCSBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHHHcCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEec
Confidence            466777778999999999999    999999999999999999998764

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=95.52  E-value=0.0047  Score=42.81  Aligned_cols=55  Identities=16%  Similarity=0.201  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      ++++|..|||+.+    ++++..+.++|+.|...|+|.+.. |...-.|.+|+.|..+..
T Consensus        19 ~~~lt~~eLa~~l----~i~~~~vs~~l~~Le~~GlV~r~~-D~R~~~i~LT~~G~~~l~   73 (85)
T d3ctaa1          19 RAYLTSSKLADML----GISQQSASRIIIDLEKNGYITRTV-TKRGQILNITEKGLDVLY   73 (85)
T ss_dssp             EEECCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEEE-ETTEEEEEECHHHHHHHH
T ss_pred             CCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCeeeec-ccccccceECHHHHHHHH
Confidence            4689999999999    999999999999999999999865 111235889998865544

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.0084  Score=39.80  Aligned_cols=45  Identities=9%  Similarity=-0.009  Sum_probs=41.0

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .++..+..++++|..|||+.+    |++...+.+++..|...|+|.+.+
T Consensus         9 ~Il~~i~~~g~~sr~eLa~~~----gLS~~Tvs~iv~~L~~~glv~e~g   53 (70)
T d1z6ra1           9 AVYRLIDQLGPVSRIDLSRLA----QLAPASITKIVHEMLEAHLVQELE   53 (70)
T ss_dssp             HHHHHHHSSCSCCHHHHHHHT----TCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred             HHHHHHHHcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEeeC
Confidence            467778889999999999999    999999999999999999998764

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.13  E-value=0.0086  Score=43.40  Aligned_cols=60  Identities=27%  Similarity=0.242  Sum_probs=47.8

Q ss_pred             hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707            5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus         5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      ..++.++..+..+++.++.|||+.+    |+++..+..-|+.|...|+|.....++ .-.|++++
T Consensus        31 p~Rl~Il~~L~~~~~~~v~ela~~l----~~s~s~vS~HL~~L~~aGlv~~~r~G~-~~~Y~l~~   90 (108)
T d1u2wa1          31 ENRAKITYALCQDEELCVCDIANIL----GVTIANASHHLRTLYKQGVVNFRKEGK-LALYSLGD   90 (108)
T ss_dssp             HHHHHHHHHHHHSSCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEC-----CCEEEESC
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHHH----ccChhHHHHHHHHHHHCCeeEEEEECC-EEEEEECH
Confidence            3466777777678999999999999    999999999999999999999876321 23688775

>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein BC1842
species: Bacillus cereus [TaxId: 1396]

Probab=95.01  E-value=0.0092  Score=45.07  Aligned_cols=47  Identities=11%  Similarity=0.130  Sum_probs=39.2

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      .+.+.|.++||+..    ++++..++++|..|...|+|...++   .|.|.+..
T Consensus        20 ~~~~vss~~IA~~~----~i~~~~l~kil~~L~~aGlv~S~rG---~GG~~L~~   66 (138)
T d1ylfa1          20 PSSLCTSDYMAESV----NTNPVVIRKIMSYLKQAGFVYVNRG---PGGAGLLK   66 (138)
T ss_dssp             CGGGCCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEC------CCEEESS
T ss_pred             CCCcCcHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEeecC---CCCceecC
Confidence            35689999999999    9999999999999999999988762   46677764

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=94.95  E-value=0.016  Score=37.67  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=38.4

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEc
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSL   67 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~   67 (309)
                      .|-++.|||+.+    |+++..++.+|+.|...|.+.+..    ++.|-+
T Consensus        22 ~PP~vrdl~~~l----~~~e~~~~~lL~~l~~~G~lvkI~----~d~yfh   63 (64)
T d1lvaa3          22 QPPSFKEVAGSF----NLDPSELEELLHYLVREGVLVKIN----DEFYWH   63 (64)
T ss_dssp             SCCBHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEESS----SSBEEE
T ss_pred             CCCcHHHHHHHh----CCCHHHHHHHHHHHHHCCCEEEec----cccccc
Confidence            699999999999    999999999999999999999986    677754

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.59  E-value=0.019  Score=42.53  Aligned_cols=47  Identities=11%  Similarity=0.147  Sum_probs=39.1

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      .++++|.++||+..    ++++..++++|+.|...|+|+..++ . .|.| +..
T Consensus        15 ~~~~~ss~~IA~~~----~~~~~~v~kIl~~L~~aglV~s~rG-~-~GGy-Lar   61 (127)
T d1xd7a_          15 MDEKTSSEIIADSV----NTNPVVVRRMISLLKKADILTSRAG-V-PGAS-LKK   61 (127)
T ss_dssp             TCSCCCHHHHHHHH----TSCHHHHHHHHHHHHHTTSEECCSS-S-SSCE-ESS
T ss_pred             cCCCCCHHHHHHHh----CcCHHHHHHHHHHHHHhCcccccCC-C-CCcc-ccC
Confidence            36789999999999    9999999999999999999987653 2 2335 654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.43  E-value=0.054  Score=41.66  Aligned_cols=89  Identities=10%  Similarity=0.052  Sum_probs=61.0

Q ss_pred             eEEEecCCc--cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-CCCCceeeehhhhhcCChhHHH
Q 021707          163 RLVDVGGSA--GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-IPAANAIFMKWVLATWTDDECK  238 (309)
Q Consensus       163 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-~p~~D~i~~~~vlh~~~d~~~~  238 (309)
                      +|+=||||.  |.++..|.+.+++.+ ++++|. ++.++.+++...+.....+.... ...+|+|++.-     |.++..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~-I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~-----p~~~~~   76 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGK-IYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS-----PVRTFR   76 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSE-EEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECS-----CHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeE-EEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccC-----Cchhhh
Confidence            477789984  346667777778888 999998 66777776554444433333222 22358888765     556788


Q ss_pred             HHHHHHHHhcCCCcEEEEe
Q 021707          239 LIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       239 ~iL~~~~~aL~pgG~l~i~  257 (309)
                      ++|+++...++++..+.-+
T Consensus        77 ~vl~~l~~~~~~~~ii~d~   95 (171)
T d2g5ca2          77 EIAKKLSYILSEDATVTDQ   95 (171)
T ss_dssp             HHHHHHHHHSCTTCEEEEC
T ss_pred             hhhhhhhcccccccccccc
Confidence            9999999999988655433

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=94.32  E-value=0.029  Score=39.64  Aligned_cols=58  Identities=22%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      .++.++..+ .+++.++.|||+.+    |++...+..-|+.|...|+|.....+. .-.|++++
T Consensus        24 ~Rl~Il~~L-~~~~~~v~ela~~l----~is~stvS~HL~~L~~aglV~~~r~G~-~~~Y~l~~   81 (98)
T d1r1ta_          24 NRLRLLSLL-ARSELCVGDLAQAI----GVSESAVSHQLRSLRNLRLVSYRKQGR-HVYYQLQD   81 (98)
T ss_dssp             HHHHHHHHH-TTCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEESS
T ss_pred             HHHHHHHHH-HcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCceEEEEECC-EEEEEECh
Confidence            355566644 57899999999999    999999999999999999998876321 12477664

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.21  E-value=0.022  Score=40.03  Aligned_cols=58  Identities=22%  Similarity=0.203  Sum_probs=45.7

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      .++-++..+ .+++.++.||++.+    |+++..+.+-|+.|...|+|.....+. .-.|+++.
T Consensus        19 ~Rl~Il~~L-~~~~~~v~el~~~l----~~s~~~vS~HL~~L~~~glv~~~r~G~-~~~Y~l~~   76 (94)
T d1r1ua_          19 NRIRIMELL-SVSEASVGHISHQL----NLSQSNVSHQLKLLKSVHLVKAKRQGQ-SMIYSLDD   76 (94)
T ss_dssp             HHHHHHHHH-HHCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEEESS
T ss_pred             HHHHHHHHH-HcCCccHHHHHHHH----CCCHHHHHHHHHHHHHCCceEEEEECC-EEEEEECc
Confidence            345556544 47899999999999    999999999999999999998876221 12488774

>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Iron-dependent regulator IdeR
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.20  E-value=0.045  Score=35.32  Aligned_cols=46  Identities=4%  Similarity=-0.007  Sum_probs=40.7

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ..++.+.-.+++.+..+||+.+    |+++..+.++++-|...|+|...+
T Consensus        12 ~~I~~L~~~~~~v~~~~iA~~L----~vs~~SVt~mvkrL~~~Glv~~~~   57 (63)
T d2isya1          12 RTIYDLEEEGVTPLRARIAERL----DQSGPTVSQTVSRMERDGLLRVAG   57 (63)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEECT
T ss_pred             HHHHHHHhcCCCCcHHHHHHHh----CCCchhHHHHHHHHHHCCCEEEcC
Confidence            3456666667899999999999    999999999999999999999875

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.046  Score=47.16  Aligned_cols=55  Identities=7%  Similarity=-0.057  Sum_probs=41.0

Q ss_pred             CcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHh---hCCCCCCceEEeCCCCC
Q 021707          160 GVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVG---EAPSIPGVTHIGGDMFN  215 (309)
Q Consensus       160 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~---~a~~~~ri~~~~~d~~~  215 (309)
                      ...+|||||+|.|.++..|+++.---+ ++++|. +...+   ...+.++++++.+|++.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~-v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQ-YSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSE-EEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            456899999999999999998752235 889997 33333   22335789999999874

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.08  E-value=0.017  Score=41.62  Aligned_cols=44  Identities=18%  Similarity=0.132  Sum_probs=38.6

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +...++..+++|+.|||+.+    |++...+.+.|+-|...|+|.+..
T Consensus        25 v~~~L~~~g~~t~~eia~~~----~i~~~~v~~~l~~L~~~GlV~r~~   68 (109)
T d1sfxa_          25 IYSLLLERGGMRVSEIAREL----DLSARFVRDRLKVLLKRGFVRREI   68 (109)
T ss_dssp             HHHHHHHHCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHhcCCCCHHHHHHHh----CCCcchHHHHHHHHHhCCCEEEEe
Confidence            44445567999999999999    999999999999999999998653

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.77  E-value=0.019  Score=37.02  Aligned_cols=43  Identities=16%  Similarity=0.262  Sum_probs=37.9

Q ss_pred             hhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           10 RKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        10 ~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +++.+. ++|+|..|||+.+    |++...+.++++.|...|+|.+.+
T Consensus         4 Il~~i~-~~pisr~eLa~~~----gls~~TVs~~v~~L~~~GlV~e~~   46 (62)
T d2hoea1           4 ILKRIM-KSPVSRVELAEEL----GLTKTTVGEIAKIFLEKGIVVEEK   46 (62)
T ss_dssp             SHHHHH-HSCBCHHHHHHHH----TCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHH-HCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCEEECC
Confidence            345554 5799999999999    999999999999999999998875

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.64  E-value=0.039  Score=35.74  Aligned_cols=52  Identities=17%  Similarity=0.190  Sum_probs=41.4

Q ss_pred             hhhhhhcC-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCc-eeeecccccCceEEcCh
Q 021707            9 GRKKVRLA-NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGV-FSEHREFRGERKYSLTE   69 (309)
Q Consensus         9 g~~~~~l~-~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gl-l~~~~~~~~~~~y~~t~   69 (309)
                      -+.+.+.. ++++|..+||+.+    +++.+.++|-+..|...|+ +...     .+.|.+.+
T Consensus        11 ~Il~~L~~~~~~vs~~~La~~l----~VS~~TI~rdi~~L~~~G~~I~~~-----~gGY~L~~   64 (65)
T d1j5ya1          11 SIVRILERSKEPVSGAQLAEEL----SVSRQVIVQDIAYLRSLGYNIVAT-----PRGYVLAG   64 (65)
T ss_dssp             HHHHHHHHCSSCBCHHHHHHHH----TSCHHHHHHHHHHHHHHTCCCEEE-----TTEEECCT
T ss_pred             HHHHHHHHcCCCCcHHHHHHHH----CCCHHHHHHHHHHHHHCCCeEEEe-----CCCEEeCC
Confidence            44555543 5689999999999    9999999999999999998 4444     45788764

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.60  E-value=0.06  Score=37.35  Aligned_cols=51  Identities=16%  Similarity=0.256  Sum_probs=45.7

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhcC
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~~   77 (309)
                      +.++...|...+    +++...+...|..|+..|++++.     ++.|.+|+.|..|+..
T Consensus        17 ~g~~kT~i~~~a----NLs~~~~~kyl~~L~~~GLI~~~-----~~~Y~iT~kG~~~L~~   67 (90)
T d1r7ja_          17 SGSPKTRIMYGA----NLSYALTGRYIKMLMDLEIIRQE-----GKQYMLTKKGEELLED   67 (90)
T ss_dssp             TCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHHHH
T ss_pred             CCCCccHHHHHc----CCCHHHHHHHHHHHHHCCCeeec-----CCEEEECccHHHHHHH
Confidence            456889999999    99999999999999999999877     5899999999877753

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.085  Score=44.54  Aligned_cols=111  Identities=14%  Similarity=0.190  Sum_probs=69.4

Q ss_pred             HhhcCCCCCcceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHH----hhCCC--CCCceEEeCCCCCC---CCC-C
Q 021707          152 LDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVV----GEAPS--IPGVTHIGGDMFNS---IPA-A  220 (309)
Q Consensus       152 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~----~~a~~--~~ri~~~~~d~~~~---~p~-~  220 (309)
                      +..++ ...+.+|||+.++.|.=+..+++...+.+ ++..|. +.-+    ..+++  ...+..+..|....   .+. +
T Consensus        95 ~~~L~-~~~g~~vLD~CAaPGgKt~~la~l~~~~~-i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~f  172 (284)
T d1sqga2          95 MTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF  172 (284)
T ss_dssp             HHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred             ccccC-ccccceeEeccCccccchhhhhhhhhhhh-hhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccc
Confidence            33444 55678999999999999999999888877 999997 2222    22221  13444444444322   222 4


Q ss_pred             ceeee------hhhh-------hcCChhH-------HHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          221 NAIFM------KWVL-------ATWTDDE-------CKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       221 D~i~~------~~vl-------h~~~d~~-------~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      |.|++      ..++       +.|...+       -.+||+++.+.|+|||+|+-.--.+...
T Consensus       173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~  236 (284)
T d1sqga2         173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE  236 (284)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG
T ss_pred             cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh
Confidence            77763      2222       2343322       4678999999999999877555444433

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.25  E-value=0.081  Score=45.35  Aligned_cols=110  Identities=15%  Similarity=0.102  Sum_probs=67.6

Q ss_pred             HhhcCCCCCcceEEEecCCccHHHHHHHHhcCC-CceEEEeec-hhHHhhCCC------CCCceEEeCCCCCC--CCC-C
Q 021707          152 LDSYNGFKGVKRLVDVGGSAGDCLRMILQKHHF-ICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFNS--IPA-A  220 (309)
Q Consensus       152 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~~--~p~-~  220 (309)
                      ...++ -..+.+|+|+.+|.|.=+..++....+ .. ++..|. +.-+...++      ..++.....|....  .+. .
T Consensus       109 ~~~l~-~~~g~~vlD~CAapGgKt~~l~~~~~~~~~-i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~f  186 (313)
T d1ixka_         109 PVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGV-IYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF  186 (313)
T ss_dssp             HHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCE
T ss_pred             hhccc-CCccceeeecccchhhhhHhhhhhcccccc-eeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccc
Confidence            33443 456689999999999988888877654 45 888897 333333221      25666666666543  222 4


Q ss_pred             ceeee------hhhh-------hcCChh-------HHHHHHHHHHHhcCCCcEEEEeccccCC
Q 021707          221 NAIFM------KWVL-------ATWTDD-------ECKLIMENCYKALLAGGKLIACEPVLLD  263 (309)
Q Consensus       221 D~i~~------~~vl-------h~~~d~-------~~~~iL~~~~~aL~pgG~l~i~e~~~~~  263 (309)
                      |.|++      ..++       ..+..+       ...++|+++.+.++|||+|+-..-.+..
T Consensus       187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~  249 (313)
T d1ixka_         187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEP  249 (313)
T ss_dssp             EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCG
T ss_pred             cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCCh
Confidence            77664      1111       122322       2467899999999999987655444433

>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Manganese transport regulator MntR
species: Bacillus subtilis [TaxId: 1423]

Probab=93.13  E-value=0.032  Score=35.78  Aligned_cols=46  Identities=9%  Similarity=0.016  Sum_probs=39.2

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      ..++++...+++.+..+||+.+    |+++..+..+++-|...|+|+...
T Consensus        10 k~I~~l~~~~~~v~~~~iA~~L----~vs~~SVs~mikrL~~~GlV~~~~   55 (61)
T d2ev0a1          10 EQIYMLIEEKGYARVSDIAEAL----AVHPSSVTKMVQKLDKDEYLIYEK   55 (61)
T ss_dssp             HHHHHHHHHHSSCCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEC--
T ss_pred             HHHHHHHhcCCCccHHHHHHHh----CCCchhHHHHHHHHHHCCCEEEcc
Confidence            3456666567899999999999    999999999999999999998874

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.82  E-value=0.057  Score=42.61  Aligned_cols=60  Identities=18%  Similarity=0.193  Sum_probs=46.2

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccC----ceEEcChhc
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGE----RKYSLTEIG   71 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~----~~y~~t~~~   71 (309)
                      +.-+++++ .++|.|+.|||+.+    |+++..+.+-|+.|...|+|+....+...    -.|++|+.+
T Consensus        21 R~~Il~~L-~~~~~s~~ela~~l----g~s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~~   84 (190)
T d1ulya_          21 RRKILKLL-RNKEMTISQLSEIL----GKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADV   84 (190)
T ss_dssp             HHHHHHHH-TTCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSE
T ss_pred             HHHHHHHH-HhCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcccc
Confidence            44566655 68999999999999    99999999999999999999765421111    248888654

>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA3067
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.81  E-value=0.084  Score=39.57  Aligned_cols=57  Identities=19%  Similarity=0.231  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      .+|++|..+||+..    +++...+.++++-|...|+|++...  |...-.+.+|+.|+.+..
T Consensus        46 ~~g~~t~~~La~~~----~~~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~  104 (145)
T d2hr3a1          46 LGGDVTPSELAAAE----RMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLY  104 (145)
T ss_dssp             TTSCBCHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHH
T ss_pred             cCCCCCHHHHHHHH----CCCHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHHH
Confidence            45789999999999    9999999999999999999987652  211236999999876654

>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator TM0816
species: Thermotoga maritima [TaxId: 2336]

Probab=92.69  E-value=0.054  Score=40.39  Aligned_cols=57  Identities=19%  Similarity=0.253  Sum_probs=47.0

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.|..+||+.+    +++...+.+.++.|...|+|.+...  |...-..++|+.|..+..
T Consensus        43 ~~~~~t~~~La~~l----~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~  101 (140)
T d2etha1          43 LFGPKKMKEIAEFL----STTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFG  101 (140)
T ss_dssp             HHCCBCHHHHHHHT----TSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHH
T ss_pred             HcCCcCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHH
Confidence            45789999999999    9999999999999999999997652  111236899998876654

>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator OEOE1854
species: Oenococcus oeni [TaxId: 1247]

Probab=92.47  E-value=0.082  Score=39.05  Aligned_cols=56  Identities=11%  Similarity=0.065  Sum_probs=45.9

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~   76 (309)
                      ++++|..|||+.+    +++...+.++++.|...|+|.+....  ...-.+.+|+.|+.+..
T Consensus        43 ~~~it~~ela~~~----~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~  100 (135)
T d3broa1          43 NKEVLQRDLESEF----SIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLET  100 (135)
T ss_dssp             TSCCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHH
T ss_pred             CCCCCHHHHHHHH----CcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHH
Confidence            4679999999999    99999999999999999999876521  11236999998876654

>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: MexR repressor
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.40  E-value=0.097  Score=39.06  Aligned_cols=57  Identities=14%  Similarity=0.131  Sum_probs=45.8

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..++.|..+||+.+    +++...+.+.+..|+..|+|++...  |...-.+.+|+.|..+..
T Consensus        47 ~~~~~t~~~la~~l----~~~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~~  105 (141)
T d1lnwa_          47 EQRGLNLQDLGRQM----CRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHQ  105 (141)
T ss_dssp             SSTTCBHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHHH
T ss_pred             HCCCCCHHHHHHHH----CccHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHHH
Confidence            45679999999999    9999999999999999999987652  111235888988865544

>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtcD
species: Bacillus subtilis [TaxId: 1423]

Probab=92.40  E-value=0.091  Score=36.72  Aligned_cols=58  Identities=24%  Similarity=0.240  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccC--ceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGE--RKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~--~~y~~t~~~~~l~~   76 (309)
                      ..|+....||.... |  |+++.-|..=|+.|...|+|++......+  -.|++|+.|..|..
T Consensus        21 ~~g~~rF~el~~~l-~--gis~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~p   80 (95)
T d2hzta1          21 THGKKRTSELKRLM-P--NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLEG   80 (95)
T ss_dssp             TTCCBCHHHHHHHC-T--TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred             HcCCCCHHHHHHHh-h--cCChhHHHHHHHHHHHhHHHhheeccccccchhhhhhhhHHHHHH
Confidence            57999999999886 3  89999999999999999999976521111  23999999977764

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.32  E-value=0.046  Score=43.47  Aligned_cols=63  Identities=21%  Similarity=0.221  Sum_probs=48.4

Q ss_pred             hhhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc----ccCceEEcChhch
Q 021707            5 ECRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF----RGERKYSLTEIGK   72 (309)
Q Consensus         5 ~~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~----~~~~~y~~t~~~~   72 (309)
                      .++.-++.++ .++|.|+.|||+.+    |+++..+.+-|+.|...|+|+.....    +....|+++..+.
T Consensus        15 ~~R~~Il~~L-~~~~~~~~ela~~l----~~s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~   81 (194)
T d2p4wa1          15 ETRRRILFLL-TKRPYFVSELSREL----GVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR   81 (194)
T ss_dssp             HHHHHHHHHH-HHSCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred             HHHHHHHHHH-HhCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence            3455566644 57899999999999    99999999999999999999865421    1123688888653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.32  E-value=0.11  Score=41.29  Aligned_cols=105  Identities=10%  Similarity=-0.072  Sum_probs=66.4

Q ss_pred             CCCcceEEEecCCc-cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCC-C---------CCC-Cceee
Q 021707          158 FKGVKRLVDVGGSA-GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFN-S---------IPA-ANAIF  224 (309)
Q Consensus       158 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~-~---------~p~-~D~i~  224 (309)
                      .+.+.+|+.+|||. |.++..+++.....+ +++.|. ++-++.+++..--..+  |..+ +         -+. .|+++
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~-Vi~~d~~~~rl~~a~~~Ga~~~~--~~~~~~~~~~i~~~t~g~g~D~vi   99 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAV-VIVGDLNPARLAHAKAQGFEIAD--LSLDTPLHEQIAALLGEPEVDCAV   99 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHTTCEEEE--TTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccc-eeeecccchhhHhhhhccccEEE--eCCCcCHHHHHHHHhCCCCcEEEE
Confidence            67788999999987 778888888776667 999998 6666666654322222  2111 1         122 37766


Q ss_pred             ehhh------hh-cCChhHHHHHHHHHHHhcCCCcEEEEeccccCCCC
Q 021707          225 MKWV------LA-TWTDDECKLIMENCYKALLAGGKLIACEPVLLDDS  265 (309)
Q Consensus       225 ~~~v------lh-~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~~  265 (309)
                      -.--      .| ........+.|+.+.+.++|+|++.++-...++.+
T Consensus       100 d~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~  147 (195)
T d1kola2         100 DAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDP  147 (195)
T ss_dssp             ECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCT
T ss_pred             ECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcc
Confidence            3211      01 01111224689999999999999999976555543

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=92.25  E-value=0.043  Score=39.30  Aligned_cols=38  Identities=11%  Similarity=0.246  Sum_probs=35.5

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .++|+|+.|||+.+    ++++..+.+.|.-|...|+|.+..
T Consensus        33 ~~~~~t~~eLa~~~----~i~~~tvs~~l~~L~~~GlV~r~~   70 (109)
T d2d1ha1          33 IEKPITSEELADIF----KLSKTTVENSLKKLIELGLVVRTK   70 (109)
T ss_dssp             HCSCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             cCCCCCHHHHHHHH----CccHhHHHHHHHHHHHCCCEEEee
Confidence            46899999999999    999999999999999999998765

>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator TM0710
species: Thermotoga maritima [TaxId: 2336]

Probab=91.80  E-value=0.081  Score=39.36  Aligned_cols=57  Identities=12%  Similarity=0.228  Sum_probs=47.0

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhcC
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~~   77 (309)
                      .++.|..+||+.+    +++...+.+++.-|...|++.+...  |...-.+.+|+.|..++..
T Consensus        42 ~~~~t~~~la~~l----~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~  100 (139)
T d2a61a1          42 EGPKRPGELSVLL----GVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEK  100 (139)
T ss_dssp             HCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred             cCCCCHHHHHHHh----CCCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHH
Confidence            5789999999999    9999999999999999999987652  1112369999999777653

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=91.71  E-value=0.042  Score=50.67  Aligned_cols=108  Identities=14%  Similarity=0.109  Sum_probs=65.5

Q ss_pred             HHHHHhhcCCCCCcceEEEecCCccHHHHHHHHhcC----C--------------CceEEEeec-hhHHhhCCC------
Q 021707          148 MTSVLDSYNGFKGVKRLVDVGGSAGDCLRMILQKHH----F--------------ICEGINFDL-PEVVGEAPS------  202 (309)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~--------------~~~~~~~D~-p~~~~~a~~------  202 (309)
                      +..+++.++ -....+|+|-.||+|.++.+..+...    .              .. ..++|. +.+...++.      
T Consensus       153 v~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~G~E~~~~~~~la~~nl~l~~  230 (524)
T d2ar0a1         153 IKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA-FIGLELVPGTRRLALMNCLLHD  230 (524)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTS-EEEEESCHHHHHHHHHHHHTTT
T ss_pred             hHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhh-hhhhccCHHHHHHHHHHHHhhc
Confidence            444555554 44567999999999999988766421    1              13 688887 444333321      


Q ss_pred             --C---CCceEEeCCCCCC----CCCCceeeehhhhh--cC-----------ChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          203 --I---PGVTHIGGDMFNS----IPAANAIFMKWVLA--TW-----------TDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       203 --~---~ri~~~~~d~~~~----~p~~D~i~~~~vlh--~~-----------~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                        .   ..-.+..+|.+..    .+..|+|+.+--.-  .+           ...+ .-.+..+.+.|+|||++.++=
T Consensus       231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~gGr~aiIl  307 (524)
T d2ar0a1         231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-LCFMQHIIETLHPGGRAAVVV  307 (524)
T ss_dssp             CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH-HHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcccccccc-HHHHHHHHHhccccCcEEEEE
Confidence              0   2234555666542    22358888654331  11           1122 458999999999999988763

>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator MgrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.68  E-value=0.083  Score=39.18  Aligned_cols=57  Identities=16%  Similarity=0.279  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.|..+||+.+    ++++..+.++++-|+..|++++....  ...-.+.+|+.|..+..
T Consensus        45 ~~~~~t~~~la~~l----~~~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~~  103 (136)
T d2bv6a1          45 DESPVNVKKVVTEL----ALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRP  103 (136)
T ss_dssp             HSSEEEHHHHHHHT----TCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHH
T ss_pred             cCCCCCHHHHHHHH----CCCHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHHH
Confidence            46889999999999    99999999999999999999876531  11225789998876554

>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.94  E-value=0.075  Score=39.98  Aligned_cols=39  Identities=23%  Similarity=0.368  Sum_probs=35.8

Q ss_pred             cCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           15 LANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        15 l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +.++|+|+.|||+.+    |++...+.+.|+-|...|+|.+..
T Consensus        37 ~~~~plt~~ela~~l----~vsk~~vs~~l~~L~~~GlV~r~~   75 (151)
T d1ku9a_          37 LSDKPLTISDIMEEL----KISKGNVSMSLKKLEELGFVRKVW   75 (151)
T ss_dssp             HCSSCEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             hCCCCcCHHHHHHHh----CCCcchHHHHHHHHHHCCCEEEEE
Confidence            356799999999999    999999999999999999998664

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=90.83  E-value=0.28  Score=37.19  Aligned_cols=86  Identities=13%  Similarity=0.015  Sum_probs=53.9

Q ss_pred             eEEEecCC--ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCCCCCCceeeehhhhhcCChhHHHH
Q 021707          163 RLVDVGGS--AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNSIPAANAIFMKWVLATWTDDECKL  239 (309)
Q Consensus       163 ~vlDvG~G--~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~~p~~D~i~~~~vlh~~~d~~~~~  239 (309)
                      +|.=||+|  -+.++..|.+.  +.+ +++.|. ++.++.+++...+... .+..+....+|+|++.-     |.....+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~--g~~-V~~~d~~~~~~~~a~~~~~~~~~-~~~~~~~~~~DiIilav-----p~~~~~~   72 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRR--GHY-LIGVSRQQSTCEKAVERQLVDEA-GQDLSLLQTAKIIFLCT-----PIQLILP   72 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCE-EEEECSCHHHHHHHHHTTSCSEE-ESCGGGGTTCSEEEECS-----CHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHC--CCE-EEEEECCchHHHHHHHhhcccee-eeecccccccccccccC-----cHhhhhh
Confidence            45567765  23344455443  456 899998 5666665544333222 23323455679998754     6677889


Q ss_pred             HHHHHHHhcCCCcEEEEe
Q 021707          240 IMENCYKALLAGGKLIAC  257 (309)
Q Consensus       240 iL~~~~~aL~pgG~l~i~  257 (309)
                      +++++...++|+..++-.
T Consensus        73 vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          73 TLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             HHHHHGGGSCTTCEEEEC
T ss_pred             hhhhhhhhcccccceeec
Confidence            999999999988755433

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=90.76  E-value=0.16  Score=32.50  Aligned_cols=47  Identities=15%  Similarity=0.109  Sum_probs=40.6

Q ss_pred             hhhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            6 CRDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         6 ~~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      ....+.+.+-.++..|..|||+.+    |+++..+.+=++-|...|++...
T Consensus         6 ~D~~IL~~L~~n~r~s~~~iA~~l----gis~~tv~~Ri~~L~~~giI~~~   52 (63)
T d2cfxa1           6 IDLNIIEELKKDSRLSMRELGRKI----KLSPPSVTERVRQLESFGIIKQY   52 (63)
T ss_dssp             HHHHHHHHHHHCSCCCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeeeE
Confidence            344556666678999999999999    99999999999999999999865

>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator YusO
species: Bacillus subtilis [TaxId: 1423]

Probab=90.74  E-value=0.065  Score=40.10  Aligned_cols=58  Identities=17%  Similarity=0.177  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhcC
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~~   77 (309)
                      ..++.|+.+||+.+    ++++..+.+.+..|+..|+|.+....  ...-.+.+|+.|..+...
T Consensus        46 ~~~~~t~~~la~~~----~i~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~~  105 (143)
T d1s3ja_          46 KHGSLKVSEIAERM----EVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEE  105 (143)
T ss_dssp             HHSEEEHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHH----CcCHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHHH
Confidence            35789999999999    99999999999999999999876521  111259999988766653

>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Multiple antibiotic resistance repressor, MarR
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.17  Score=37.43  Aligned_cols=56  Identities=14%  Similarity=0.105  Sum_probs=46.1

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +++.|..|||+.+    +++...+.+++..|...|+|++...  |...-.+++|+.|..+..
T Consensus        46 ~~~~t~~ela~~~----~i~~~~vs~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~  103 (138)
T d1jgsa_          46 AACITPVELKKVL----SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICE  103 (138)
T ss_dssp             HSSBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHH
T ss_pred             CcCCCHHHHHHHH----CCCHhHHHHHHHHHhhCCCEEEeeccCCCCeeEEEECHHHHHHHH
Confidence            5789999999999    9999999999999999999987642  111236999998877654

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.50  E-value=0.085  Score=33.50  Aligned_cols=45  Identities=9%  Similarity=0.085  Sum_probs=38.9

Q ss_pred             hhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            8 DGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         8 ~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      .-+...+-.++..|..+||+.+    |+++..+.+=++.|...|++...
T Consensus         6 ~kIl~~L~~n~r~s~~~lA~~~----gls~~~v~~Ri~~L~~~giI~~~   50 (60)
T d1i1ga1           6 KIILEILEKDARTPFTEIAKKL----GISETAVRKRVKALEEKGIIEGY   50 (60)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHH----TSCHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEeE
Confidence            3445556678999999999999    99999999999999999999754

>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ReutB4095-like
domain: Putative DNA-binding protein ReutB4095
species: Ralstonia eutropha [TaxId: 106590]

Probab=90.47  E-value=0.29  Score=32.21  Aligned_cols=55  Identities=27%  Similarity=0.272  Sum_probs=46.0

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhh
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLV   75 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~   75 (309)
                      .+|-|...|+++.    ++|--.|+|.|-.|.+.|+++..-.+.+.|.=++|+.+..+.
T Consensus        22 g~~WSLaklsKra----~~PMS~LRR~LTqL~~aGl~~t~~~edG~G~A~Lt~~G~~lc   76 (81)
T d2obpa1          22 ATPWSLPKIAKRA----QLPMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA   76 (81)
T ss_dssp             CCCCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred             CCCccHHHHHhhc----CCcHHHHHHHHHHHhhcCceeeeeccCCcceeeccHHHHHHH
Confidence            3588999999999    999999999999999999997654332357889999887664

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.97  E-value=0.1  Score=33.08  Aligned_cols=46  Identities=15%  Similarity=0.154  Sum_probs=39.9

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      ..-+.+.+-.++..|..|||+.+    |+++..+.+=++.|...|++...
T Consensus         5 D~~Il~~L~~n~r~s~~eiA~~l----~ls~~~v~~Ri~~L~~~giI~~~   50 (60)
T d2cyya1           5 DKKIIKILQNDGKAPLREISKIT----GLAESTIHERIRKLRESGVIKKF   50 (60)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHH----CSCHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEeE
Confidence            34556666678999999999999    99999999999999999999855

>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator PA3341
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.90  E-value=0.25  Score=36.25  Aligned_cols=56  Identities=18%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~   76 (309)
                      .++.|..+||+.+    ++++..+.++++.|+..|+|.+....  ...-.+.+|+.|+.+..
T Consensus        41 ~~~~t~~~la~~~----~~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~   98 (137)
T d2fbha1          41 RDSPTQRELAQSV----GVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIA   98 (137)
T ss_dssp             SSCCBHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHH
T ss_pred             CCCCcHHHHHHHH----CCCHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHHH
Confidence            3468999999999    99999999999999999999977521  11125888988876654

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.25  Score=41.64  Aligned_cols=57  Identities=11%  Similarity=0.075  Sum_probs=41.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHhcC-CCceEEEeec-hhHHhhCCC------CCCceEEeCCCCC
Q 021707          158 FKGVKRLVDVGGSAGDCLRMILQKHH-FICEGINFDL-PEVVGEAPS------IPGVTHIGGDMFN  215 (309)
Q Consensus       158 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~~D~-p~~~~~a~~------~~ri~~~~~d~~~  215 (309)
                      ...+.+|||+++|.|.-+..+++... ..+ ++++|. +.-+...++      ..++.+...|+..
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~-i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~  156 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGK-IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA  156 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCce-EeeecCCHHHHHHHHHHHHhcCccceeeeehhhhh
Confidence            45577899999999998888887654 456 899998 333443332      2678888888754

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.72  E-value=0.11  Score=45.69  Aligned_cols=92  Identities=9%  Similarity=-0.108  Sum_probs=64.1

Q ss_pred             cceEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCC---------------------CCceEEeCCCCCC--
Q 021707          161 VKRLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSI---------------------PGVTHIGGDMFNS--  216 (309)
Q Consensus       161 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~---------------------~ri~~~~~d~~~~--  216 (309)
                      ..+|||..||+|..++..+.+.+..+ ++..|. +..++.++++                     ..+.+...|....  
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~-V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEE-VWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSE-EEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCE-EEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            46899999999999999888877666 999998 6666655432                     2245555554322  


Q ss_pred             -CCC-CceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          217 -IPA-ANAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       217 -~p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                       ... .|+|.+=-    |...  ...|..+.++++.||.|.|.-+
T Consensus       125 ~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGSP--MEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEECC----SSCC--HHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhcCcCCcccCCC----CCCc--HHHHHHHHHHhccCCEEEEEec
Confidence             222 37666532    2222  4689999999999999988754

>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PG0823
species: Porphyromonas gingivalis [TaxId: 837]

Probab=89.66  E-value=0.16  Score=35.90  Aligned_cols=58  Identities=21%  Similarity=0.313  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccC--ceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGE--RKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~--~~y~~t~~~~~l~~   76 (309)
                      .+|+....||.+.+ +  |+++.-|..=|+.|...|+|.+......+  -.|++|+.|..|..
T Consensus        30 ~~g~~rF~el~~~l-~--gIs~~~Ls~rLkeL~~~glv~r~~~~~~p~~veY~LT~~G~~L~p   89 (102)
T d2fswa1          30 NRRIIRYGELKRAI-P--GISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP   89 (102)
T ss_dssp             TTSCEEHHHHHHHS-T--TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred             ccCCCCHHHHHhhC-c--ccchhHHHHHHHHHHHCCceeecccCCCCCeehhhhhHhHHHHHH
Confidence            57899999999996 3  89999999999999999999876421111  24999999977653

>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Probable transcription regulator BT4300, C-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=89.61  E-value=0.23  Score=32.67  Aligned_cols=43  Identities=14%  Similarity=0.342  Sum_probs=38.0

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChh
Q 021707           19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEI   70 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~   70 (309)
                      ++|-+|||+.+    |++...+.|.|..|...|+++..     .+++.+...
T Consensus        27 ~lt~~elA~~l----g~sr~tvsr~l~~l~~~g~I~~~-----~~~i~I~d~   69 (73)
T d1zyba1          27 KVKMDDLARCL----DDTRLNISKTLNELQDNGLIELH-----RKEILIPDA   69 (73)
T ss_dssp             ECCHHHHHHHH----TSCHHHHHHHHHHHHHTTSCEEE-----TTEEEESCG
T ss_pred             ecCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEec-----CCEEEEccH
Confidence            67999999999    99999999999999999999877     467776543

>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.42  E-value=0.18  Score=37.22  Aligned_cols=56  Identities=25%  Similarity=0.273  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +++.|..+||+..    +++...+.++++.|...|+|.+...  |...-.+++|+.|..+..
T Consensus        44 ~~~~t~~~la~~l----~i~~~~vs~~l~~L~~~glI~~~~~~~D~R~~~l~lT~~G~~~~~  101 (140)
T d3deua1          44 PPDQSQIQLAKAI----GIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIA  101 (140)
T ss_dssp             CSSEEHHHHHHHH----TSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHH
T ss_pred             CCCccHHHHHHHH----CCCHhHHHHHHHHHHhCCCEEecccCCCCCceeeEECHHHHHHHH
Confidence            4579999999999    9999999999999999999987652  111236999998876665

>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PA1607
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.40  E-value=0.19  Score=37.81  Aligned_cols=57  Identities=21%  Similarity=0.258  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccc-cCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFR-GERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~-~~~~y~~t~~~~~l~~   76 (309)
                      ..|+....||.+.+    |+++..|..=|+.|...|+|.+...+. ..-.|++|+.|..|..
T Consensus        30 ~~G~~rf~el~~~l----gis~~vLs~rL~~L~~~gLv~r~~~~~p~r~~Y~LT~~G~~L~p   87 (142)
T d2f2ea1          30 FEGLTRFGEFQKSL----GLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFP   87 (142)
T ss_dssp             HTTCCSHHHHHHHH----CCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHH
T ss_pred             HcCCCCHHHHHHHh----hccHHHHHHHHHHHHHhcceeeecCCCCCeeEEecCcCcchHHH
Confidence            36899999999999    999999999999999999998743211 1135999999877654

>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarR
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.40  E-value=0.13  Score=37.06  Aligned_cols=57  Identities=18%  Similarity=0.163  Sum_probs=45.9

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.|..+||+.+    ++++..+.++++.|...|+|.+...  |...-...+|+.|..+..
T Consensus        45 ~~~~~t~~ela~~l----~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~  103 (115)
T d1hsja1          45 ESNEISSKEIAKCS----EFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQ  103 (115)
T ss_dssp             SCSEEEHHHHHHSS----CCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHH
T ss_pred             CCCCcCHHHHHHHH----CCChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHHH
Confidence            35689999999999    9999999999999999999987653  222235888888865553

>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PH0730 N-terminal domain-like
domain: Hypothetical protein PH0730
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.37  E-value=0.23  Score=32.30  Aligned_cols=52  Identities=23%  Similarity=0.287  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~~~~~l~~   76 (309)
                      ..+|+.-..||+.+    ++.++.++-.++.|..+|+++...     ..-.+|+.++.++.
T Consensus        14 l~qPiGRr~La~~L----~l~Er~vRte~~~Lk~~gLI~~~~-----~Gm~lTe~G~~~l~   65 (69)
T d2p8ta1          14 LKEPLGRKQISERL----ELGEGSVRTLLRKLSHLDIIRSKQ-----RGHFLTLKGKEIRD   65 (69)
T ss_dssp             TTSCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEC-------CEEECHHHHHHHH
T ss_pred             HcCCccHHHHHHHc----CCcHHHHHHHHHHHHHCCCeeeeC-----CCCEECHhHHHHHH
Confidence            36899999999999    999999999999999999999985     34678888876553

>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.36  E-value=0.19  Score=37.56  Aligned_cols=57  Identities=18%  Similarity=0.202  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~   76 (309)
                      .+++.|..+||+.+    ++++..+.++++-|+..|++.+....  ...-...+|+.|..+..
T Consensus        40 ~~~~~t~~~la~~l----~i~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~   98 (144)
T d1lj9a_          40 ENPGIIQEKIAELI----KVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYP   98 (144)
T ss_dssp             HSTTEEHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHH
T ss_pred             hCCCCCHHHHHHHH----CccHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHHH
Confidence            35789999999999    99999999999999999999877521  11126888988876654

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=89.17  E-value=0.14  Score=32.69  Aligned_cols=44  Identities=11%  Similarity=0.238  Sum_probs=38.8

Q ss_pred             hhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeee
Q 021707            9 GRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEH   56 (309)
Q Consensus         9 g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~   56 (309)
                      -+...+-.++..|..|||+.+    |+++..+.+=++.|...|++...
T Consensus         9 ~IL~~L~~~~r~s~~eiA~~l----~ls~~~v~~Ri~rL~~~GiI~~~   52 (63)
T d2cg4a1           9 GILEALMGNARTAYAELAKQF----GVSPETIHVRVEKMKQAGIITGA   52 (63)
T ss_dssp             HHHHHHHHCTTSCHHHHHHHH----TSCHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHcCCCCHHHHHHHH----CcCHHHHHHHHHHHHHCCCeEeE
Confidence            455556568999999999999    99999999999999999999865

>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Pleiotropic regulator of virulence genes, SarA
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.02  E-value=0.13  Score=37.13  Aligned_cols=56  Identities=7%  Similarity=0.115  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ++++|..+||+.+    ++++..+.+.++.|...|++.+...  |...-.+.+|+.|+....
T Consensus        47 ~~~~t~~~la~~l----~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~  104 (115)
T d2frha1          47 EKEYYLKDIINHL----NYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE  104 (115)
T ss_dssp             CSEEEHHHHHHHS----SSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred             CCCCCHHHHHHHH----CCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHHH
Confidence            4678999999999    9999999999999999999988763  212245889998866543

>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtfH
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.80  E-value=0.15  Score=36.88  Aligned_cols=58  Identities=19%  Similarity=0.177  Sum_probs=47.1

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccC--ceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGE--RKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~--~~y~~t~~~~~l~~   76 (309)
                      .+|+....||...+ +  |++++-|..=|+.|...|+|.+......+  -.|++|+.|+.|..
T Consensus        34 ~~g~~RF~el~~~l-~--gis~~~Ls~rL~~Le~~glv~R~~~~~~p~~veY~LT~~G~~L~~   93 (114)
T d1yyva1          34 RDGTHRFSDLRRKM-G--GVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSD   93 (114)
T ss_dssp             GGCCEEHHHHHHHS-T--TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred             hcCCCCHHHHHHHc-c--ccchhHHHHHHHHHHHHHHHhhcccCCCCchhHhHhhHhHHHHHH
Confidence            57899999999998 4  79999999999999999999877521111  24999999987764

>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.69  E-value=0.71  Score=28.62  Aligned_cols=55  Identities=7%  Similarity=0.030  Sum_probs=43.5

Q ss_pred             hhhhhhhhcCCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEc
Q 021707            7 RDGRKKVRLANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSL   67 (309)
Q Consensus         7 ~~g~~~~~l~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~   67 (309)
                      .+++++.+=.....|+.+||.++    +++...+-|+|..|...|.+.+.+.  .+-.|++
T Consensus         4 vl~~l~~lg~~~~~tA~~LA~kl----~vpKk~iNr~LYsL~~kgkl~k~~g--tPPlWr~   58 (59)
T d2gxba1           4 ILKFLEELGEGKATTAHDLSGKL----GTPKKEINRVLYSLAKKGKLQKEAG--TPPLWKI   58 (59)
T ss_dssp             HHHHHHHHCTTCCBCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEECS--SSCEEEE
T ss_pred             HHHHHHhcCCccchhHHHHHHHh----CCcHHHHHHHHHHHHHccchhhcCC--CCCCccc
Confidence            34556655456789999999999    9999999999999999999988752  1345554

>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.67  E-value=0.2  Score=36.60  Aligned_cols=56  Identities=14%  Similarity=0.179  Sum_probs=45.8

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~   76 (309)
                      ++++|..|||+.+    +++...+.+.++.|...|+|.+....  ...-...+|+.|+..+.
T Consensus        48 ~~~~t~~eia~~~----~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~  105 (125)
T d1p4xa1          48 ENTLPFKKIVSDL----CYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIA  105 (125)
T ss_dssp             CSEEEHHHHHHHS----SSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHH
T ss_pred             cCCcCHHHHHHHh----CCCcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHHH
Confidence            4689999999999    99999999999999999999887631  11235889988866554

>d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: AraC type transcriptional activator
domain: MarA
species: Escherichia coli [TaxId: 562]

Probab=88.20  E-value=0.18  Score=30.93  Aligned_cols=46  Identities=17%  Similarity=0.099  Sum_probs=34.9

Q ss_pred             cchhhhhhhhhhcC--CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCc
Q 021707            3 DNECRDGRKKVRLA--NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGV   52 (309)
Q Consensus         3 ~~~~~~g~~~~~l~--~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gl   52 (309)
                      |......+++.+-.  ..++|+++||+.+    |+++..+.|+.+......+
T Consensus         1 D~~~i~~v~~yI~~~~~~~~tl~~lA~~~----~~s~~~l~r~Fk~~~g~tp   48 (54)
T d1bl0a1           1 DAITIHSILDWIEDNLESPLSLEKVSERS----GYSKWHLQRMFKKETGHSL   48 (54)
T ss_dssp             CHHHHHHHHHHHHTTTTSCCCCHHHHHHS----SSCHHHHHHHHHHHHSSCH
T ss_pred             CHHHHHHHHHHHHhccCCCCCHHHHHHHH----CcCHHHHHHHHHHHHCcCH
Confidence            33444445554433  4799999999999    9999999999998877654

>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Organic hydroperoxide resistance transcriptional regulator OhrR
species: Bacillus subtilis [TaxId: 1423]

Probab=87.99  E-value=0.16  Score=37.49  Aligned_cols=57  Identities=23%  Similarity=0.228  Sum_probs=47.5

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhcC
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~~   77 (309)
                      .++.|..+||+.+    ++++..+.+.+.-|+..|+|.+...  |...-...+|+.|..+...
T Consensus        45 ~~~~t~~~La~~~----~i~~~~vsr~i~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~  103 (137)
T d1z91a1          45 HETLTVKKMGEQL----YLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK  103 (137)
T ss_dssp             HSEEEHHHHHHTT----TCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred             CCCCCHHHHHHHH----CcCHHHHHHHHHHHhhccceEEeecCCCCCeEEEEECHHHHHHHHH
Confidence            5789999999999    9999999999999999999987752  1112358999999877654

>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=87.88  E-value=0.21  Score=36.49  Aligned_cols=56  Identities=9%  Similarity=0.065  Sum_probs=45.3

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ++++|..+||+.+    +++...+.+.++-|...|+|.+...  |...-...+|+.|+.+..
T Consensus        47 ~~~~~~~~ia~~l----~~~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~~  104 (125)
T d1p4xa2          47 KNIVLLKDLIETI----HHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAE  104 (125)
T ss_dssp             TCCEEHHHHHHHS----SSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHH
T ss_pred             CCCccHHHHHHHH----CCCcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHHH
Confidence            4678999999999    9999999999999999999987652  212235888888865554

>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA4135
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.69  E-value=0.16  Score=37.50  Aligned_cols=58  Identities=14%  Similarity=0.094  Sum_probs=46.9

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeeccc--ccCceEEcChhchhhhcC
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREF--RGERKYSLTEIGKSLVTD   77 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~--~~~~~y~~t~~~~~l~~~   77 (309)
                      ..++.|..+||+.+    +++...+.++++-|...|+|++....  ...-.+.+|+.|..+...
T Consensus        41 ~~~~~t~~~la~~~----~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~  100 (136)
T d2fbia1          41 QQGEMESYQLANQA----CILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVS  100 (136)
T ss_dssp             HHCSEEHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHHH
Confidence            45789999999999    99999999999999999999876521  112358999988766653

>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Catabolite gene activator protein (CAP), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.05  E-value=0.38  Score=31.02  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=33.3

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      |+|-+|||..+    |+....+.|.|..|...|+++..+
T Consensus        29 ~lt~~~lA~~~----G~sRetvsr~L~~l~~~glI~~~~   63 (69)
T d1i5za1          29 KITRQEIGQIV----GCSRETVGRILKMLEDQNLISAHG   63 (69)
T ss_dssp             ECCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred             CCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEEcC
Confidence            68999999999    999999999999999999999874

>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Transcriptional regulator PG0396, C-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=87.05  E-value=0.43  Score=31.63  Aligned_cols=42  Identities=14%  Similarity=0.105  Sum_probs=37.2

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      |.|-+|||..+    |++...+.|.|..|...|+++..+     +.+.+..
T Consensus        29 ~lt~~eLA~~~----G~sretvsr~L~~l~~~glI~~~~-----~~i~I~d   70 (81)
T d2gaua1          29 YLSREELATLS----NMTVSNAIRTLSTFVSERMLALDG-----KRIKIID   70 (81)
T ss_dssp             CCCHHHHHHHT----TSCHHHHHHHHHHHHHTTSEEEET-----TEEEESC
T ss_pred             cCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEecC-----CEEEEcC
Confidence            78999999999    999999999999999999999874     5565553

>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein EF0647
species: Enterococcus faecalis [TaxId: 1351]

Probab=86.66  E-value=0.32  Score=34.60  Aligned_cols=58  Identities=17%  Similarity=0.146  Sum_probs=46.3

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccC--ceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGE--RKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~--~~y~~t~~~~~l~~   76 (309)
                      ..|+....||...+ |  |+++.-|.+=|+.|...|+|.+......+  -.|++|+.|..|..
T Consensus        29 ~~g~~RF~el~~~l-~--gIS~~~Ls~rLk~L~~~glv~R~~~~~~p~~veY~LT~~G~~L~p   88 (108)
T d1z7ua1          29 FQGTKRNGELMRAL-D--GITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALYD   88 (108)
T ss_dssp             HHSCBCHHHHHHHS-T--TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHH
T ss_pred             HcCCCCHHHHHHHC-c--CCChhHHHHHHHHHHHCCcceeeccCCCcceehhhhchhHHHHHH
Confidence            35899999999997 3  79999999999999999999876421101  13999999987764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.27  E-value=1.6  Score=31.38  Aligned_cols=84  Identities=14%  Similarity=0.073  Sum_probs=51.7

Q ss_pred             eEEEecCCccHHHHHHHHhc--CCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-------CCCCceeeehhhhhcC
Q 021707          163 RLVDVGGSAGDCLRMILQKH--HFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-------IPAANAIFMKWVLATW  232 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-------~p~~D~i~~~~vlh~~  232 (309)
                      +|+=+|+  |.++..+++..  -+.. ++++|. |+.++.+.+.-.+.++.||..++       ...+|.++...     
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t-----   73 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHD-IVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT-----   73 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCE-EEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC-----
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCC-cceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC-----
Confidence            4566665  66666666543  2456 999998 77776665444788999999764       22357766532     


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEE
Q 021707          233 TDDECKLIMENCYKALLAGGKL  254 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l  254 (309)
                      ++++.-.+.....+.+.+.-.+
T Consensus        74 ~~d~~N~~~~~~~k~~~~~~iI   95 (132)
T d1lssa_          74 GKEEVNLMSSLLAKSYGINKTI   95 (132)
T ss_dssp             SCHHHHHHHHHHHHHTTCCCEE
T ss_pred             CcHHHHHHHHHHHHHcCCceEE
Confidence            2333334555566678777433

>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-inducible transcription repressor HrcA, N-terminal domain
domain: Heat-inducible transcription repressor HrcA, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.15  E-value=0.26  Score=33.71  Aligned_cols=49  Identities=12%  Similarity=0.146  Sum_probs=40.6

Q ss_pred             hhhhhhhhhhcCC-CCCCHHHHHHHhCcCCCC--CcchHHHHHHHHHcCCceeeec
Q 021707            5 ECRDGRKKVRLAN-TPLSVSQILTCILPSGGG--DAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         5 ~~~~g~~~~~l~~-~~~t~~eLA~~~~~~~g~--~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +.+..+++..+.. .|.+..+|++..    ++  ++-.++..|..|...|++.+.-
T Consensus         8 ~IL~~Ive~y~~~g~Pv~s~~i~~~~----~l~~S~aTIRn~m~~LE~~G~l~~~h   59 (87)
T d1stza1           8 KVLYCIVREYIENKKPVSSQRVLEVS----NIEFSSATIRNDMKKLEYLGYIYQPH   59 (87)
T ss_dssp             HHHHHHHHHHHHHCSCBCHHHHHHHS----CCCSCHHHHHHHHHHHHHTTSEECCS
T ss_pred             HHHHHHHHHHHHcCCccCHHHHHHHh----CCCCCHHHHHHHHHHHHHCCcccCCC
Confidence            4566777777654 599999999997    65  5889999999999999998753

>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: CO-sensing protein CooA, C-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=85.74  E-value=0.56  Score=31.07  Aligned_cols=43  Identities=21%  Similarity=0.358  Sum_probs=37.9

Q ss_pred             CCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           19 PLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        19 ~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      |.|-+|||..+    |++...+.|.|..|...|+++...    .+.+.+..
T Consensus        30 ~~t~~eiA~~l----G~sretvsr~l~~l~~~g~I~~~~----~~~i~I~d   72 (80)
T d1ft9a1          30 DFTVEEIANLI----GSSRQTTSTALNSLIKEGYISRQG----RGHYTIPN   72 (80)
T ss_dssp             CCCHHHHHHHH----CSCHHHHHHHHHHHHHTTSSEECS----TTCEECSS
T ss_pred             CCCHHHHHHHH----CCCHHHHHHHHHHHHHCCCEEECC----CCeEEECC
Confidence            78999999999    999999999999999999999874    45666654

>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Protease production regulatory protein Hpr
species: Bacillus subtilis [TaxId: 1423]

Probab=85.55  E-value=0.23  Score=38.01  Aligned_cols=57  Identities=16%  Similarity=0.036  Sum_probs=45.9

Q ss_pred             CCCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           16 ANTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        16 ~~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      ..++.|..+||+.+    +++...+.+++.-|...|+|++...  |...-..++|+.|..+..
T Consensus        52 ~~~~~t~~~la~~~----~l~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~  110 (162)
T d2fxaa1          52 QLNGASISEIAKFG----VMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFW  110 (162)
T ss_dssp             HHTSEEHHHHHHHT----TCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHH
T ss_pred             cCCCcCHHHHHHHH----cCCchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHHH
Confidence            35789999999999    9999999999999999999997652  111236899999876654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.17  E-value=2.4  Score=31.82  Aligned_cols=94  Identities=11%  Similarity=0.013  Sum_probs=58.9

Q ss_pred             CCCcceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC----------CCC-Cceee
Q 021707          158 FKGVKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS----------IPA-ANAIF  224 (309)
Q Consensus       158 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~----------~p~-~D~i~  224 (309)
                      .....+|+=+|+| .|.++..+++...-.+ +++.|. ++-++.+++..--.++..+-...          .+. +|+++
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~-Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi  102 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQ-VVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTI  102 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCce-EEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEE
Confidence            5667788889987 5667777777764446 999997 66666665542222222211110          122 37766


Q ss_pred             ehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccc
Q 021707          225 MKWVLATWTDDECKLIMENCYKALLAGGKLIACEPV  260 (309)
Q Consensus       225 ~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~  260 (309)
                      -.-     ..   ...++.+.+.++|||++++.-..
T Consensus       103 d~~-----G~---~~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2         103 ECT-----GA---EASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             ECS-----CC---HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             ecc-----CC---chhHHHHHHHhcCCCEEEEEecC
Confidence            432     11   25788899999999999998643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=85.04  E-value=3.9  Score=29.05  Aligned_cols=86  Identities=9%  Similarity=-0.027  Sum_probs=48.6

Q ss_pred             eEEEecCCccHHHHHHHHhc--CCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-------CCCCceeeehhhhhcC
Q 021707          163 RLVDVGGSAGDCLRMILQKH--HFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-------IPAANAIFMKWVLATW  232 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-------~p~~D~i~~~~vlh~~  232 (309)
                      +++=||+|  .++..+++..  -+.. ++++|. ++.++.++.. ....+.||..++       +..+|.+++..     
T Consensus         2 ~~iIiG~G--~~G~~la~~L~~~g~~-vvvid~d~~~~~~~~~~-~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~-----   72 (134)
T d2hmva1           2 QFAVIGLG--RFGGSIVKELHRMGHE-VLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAI-----   72 (134)
T ss_dssp             CEEEECCS--HHHHHHHHHHHHTTCC-CEEEESCHHHHHHTTTT-CSEEEECCTTCTTHHHHHTGGGCSEEEECC-----
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCCe-EEEecCcHHHHHHHHHh-CCcceeeecccchhhhccCCccccEEEEEc-----
Confidence            45556654  5555555443  2456 899998 7778877654 346667888765       12356655543     


Q ss_pred             ChhHHHHHHHHHHHhcCCCcEEEEe
Q 021707          233 TDDECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       233 ~d~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      ++++...++....+.+.|..+++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          73 GANIQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CchHHhHHHHHHHHHHcCCCcEEee
Confidence            3332233444444445566676544

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=84.93  E-value=0.47  Score=30.92  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=32.7

Q ss_pred             CCCCHHHHHHHhCcCCCCC-cchHHHHHHHHHcCCceeeec
Q 021707           18 TPLSVSQILTCILPSGGGD-AENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~-~~~l~rlL~~L~~~gll~~~~   57 (309)
                      -|-|+.|||+.+    |+. +..+.+.|..|...|++.+..
T Consensus        23 ~~Ps~rei~~~~----g~~S~stv~~~l~~Le~kG~I~r~~   59 (71)
T d1jhfa1          23 MPPTRAEIAQRL----GFRSPNAAEEHLKALARKGVIEIVS   59 (71)
T ss_dssp             SCCCHHHHHHHT----TCSSHHHHHHHHHHHHHTTSEEECS
T ss_pred             CCCCHHHHHHHc----CCCCHHHHHHHHHHHHHCcCeecCC
Confidence            488999999999    995 678999999999999999974

>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Putative transcriptional regulator RHA1 ro03477
species: Rhodococcus sp. RHA1 [TaxId: 101510]

Probab=84.92  E-value=0.59  Score=30.14  Aligned_cols=44  Identities=9%  Similarity=0.134  Sum_probs=37.0

Q ss_pred             CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEc
Q 021707           17 NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSL   67 (309)
Q Consensus        17 ~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~   67 (309)
                      +..++..+||+..    |++...+++-+..|...|+++...   +.|.|-.
T Consensus        23 G~~l~~~~La~~~----~vSr~tvr~Al~~L~~~Gli~~~~---~~G~~V~   66 (69)
T d2hs5a1          23 GARLSEPDICAAL----DVSRNTVREAFQILIEDRLVAHEL---NRGVFVR   66 (69)
T ss_dssp             TCEECHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEET---TTEEEEC
T ss_pred             cCccCHHHHHHHH----CCCHHHHHHHHHHHHHCCcEEEEc---CCEEEec
Confidence            3566899999999    999999999999999999999886   2455543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=84.62  E-value=0.61  Score=33.68  Aligned_cols=86  Identities=14%  Similarity=0.082  Sum_probs=53.5

Q ss_pred             eEEEecCCccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-------CCCCceeeehhhhhcCCh
Q 021707          163 RLVDVGGSAGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-------IPAANAIFMKWVLATWTD  234 (309)
Q Consensus       163 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-------~p~~D~i~~~~vlh~~~d  234 (309)
                      +++=+  |.|..+..+++..-+-. ++++|. +..++..+ ...+.++.||..++       +..++.+++..-    .|
T Consensus         2 HivI~--G~g~~g~~l~~~L~~~~-i~vi~~d~~~~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~----~d   73 (129)
T d2fy8a1           2 HVVIC--GWSESTLECLRELRGSE-VFVLAEDENVRKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNLE----SD   73 (129)
T ss_dssp             CEEEE--SCCHHHHHHHHTSCGGG-EEEEESCTTHHHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECCS----SH
T ss_pred             EEEEE--CCCHHHHHHHHHHcCCC-CEEEEcchHHHHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEecc----ch
Confidence            34444  56788999998876666 888887 44444432 35789999999765       233566554321    34


Q ss_pred             hHHHHHHHHHHHhcCCCcEEEEe
Q 021707          235 DECKLIMENCYKALLAGGKLIAC  257 (309)
Q Consensus       235 ~~~~~iL~~~~~aL~pgG~l~i~  257 (309)
                      .++..+... .+.+.|..+++..
T Consensus        74 ~~n~~~~~~-~r~~~~~~~iia~   95 (129)
T d2fy8a1          74 SETIHCILG-IRKIDESVRIIAE   95 (129)
T ss_dssp             HHHHHHHHH-HHHHCSSSCEEEE
T ss_pred             hhhHHHHHH-HHHHCCCceEEEE
Confidence            455444444 4557888765544

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=84.19  E-value=2.1  Score=32.52  Aligned_cols=93  Identities=10%  Similarity=-0.014  Sum_probs=59.6

Q ss_pred             CCCcceEEEecCCc-cHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeC---CCC-CC-----CCC-Cceeee
Q 021707          158 FKGVKRLVDVGGSA-GDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGG---DMF-NS-----IPA-ANAIFM  225 (309)
Q Consensus       158 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~---d~~-~~-----~p~-~D~i~~  225 (309)
                      .+.+.+|+=+|||. |.++..+++..--.+ +++.|. ++-.+.+++..--.++..   |-. +.     .+. .|+++-
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~-Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie  104 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASR-IIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLD  104 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCce-eeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence            66778999999986 889999999885556 888887 445555555433333321   110 00     112 377653


Q ss_pred             hhhhhcCChhHHHHHHHHHHHhcCCC-cEEEEecc
Q 021707          226 KWVLATWTDDECKLIMENCYKALLAG-GKLIACEP  259 (309)
Q Consensus       226 ~~vlh~~~d~~~~~iL~~~~~aL~pg-G~l~i~e~  259 (309)
                      .-     ..   ...+.+..+.++|+ |+++++-.
T Consensus       105 ~~-----G~---~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2         105 CA-----GT---AQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             SS-----CC---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             ec-----cc---chHHHHHHHHhhcCCeEEEecCC
Confidence            22     11   35788899999996 99998754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=83.70  E-value=1.3  Score=33.60  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=60.3

Q ss_pred             HHhhcCCCCCcceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCC---CCC----CCC-C
Q 021707          151 VLDSYNGFKGVKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDM---FNS----IPA-A  220 (309)
Q Consensus       151 ~~~~~~~~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~---~~~----~p~-~  220 (309)
                      +.+..+ .+...+|+=+||| .|.++..+++.....+ +++.|. +.-++.+++..-.+++..+-   .+.    .+. .
T Consensus        20 ~~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~-v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~   97 (174)
T d1f8fa2          20 CINALK-VTPASSFVTWGAGAVGLSALLAAKVCGASI-IIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGV   97 (174)
T ss_dssp             HHTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSE-EEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             HHHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccce-eeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCC
Confidence            344443 6677888889987 5667778887775556 788886 55566555543333332211   110    122 2


Q ss_pred             ceeeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          221 NAIFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       221 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      |+++-.-     ..   ...++.+.+.++|+|+++++-.
T Consensus        98 D~vid~~-----G~---~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          98 NFALEST-----GS---PEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             EEEEECS-----CC---HHHHHHHHHTEEEEEEEEECCC
T ss_pred             cEEEEcC-----Cc---HHHHHHHHhcccCceEEEEEee
Confidence            6665321     11   2567888899999999998754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=83.54  E-value=2.1  Score=32.50  Aligned_cols=98  Identities=16%  Similarity=0.020  Sum_probs=59.8

Q ss_pred             CCCcceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEe-CC--CCC------C-C-CC-Ccee
Q 021707          158 FKGVKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIG-GD--MFN------S-I-PA-ANAI  223 (309)
Q Consensus       158 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~-~d--~~~------~-~-p~-~D~i  223 (309)
                      .+.+.+|+-+|+| .|.++..+++.+---+ +++.|. ++-.+.+++..--.++. .+  ..+      . . +. .|+|
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~-Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvv  104 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAEN-VIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFI  104 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSE-EEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred             CCCCCEEEEECCCccchhheeccccccccc-ccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEE
Confidence            5567899999987 5888889998863236 899997 55555555442212221 11  100      0 1 12 3776


Q ss_pred             eehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEeccccCCC
Q 021707          224 FMKWVLATWTDDECKLIMENCYKALLAGGKLIACEPVLLDD  264 (309)
Q Consensus       224 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~~~~~~  264 (309)
                      +-.-     ..   ...++.+.+.|+|||+++++-...+..
T Consensus       105 id~v-----G~---~~~~~~a~~~l~~~G~iv~~G~~~~~~  137 (182)
T d1vj0a2         105 LEAT-----GD---SRALLEGSELLRRGGFYSVAGVAVPQD  137 (182)
T ss_dssp             EECS-----SC---TTHHHHHHHHEEEEEEEEECCCCSCCC
T ss_pred             eecC-----Cc---hhHHHHHHHHhcCCCEEEEEeecCCCC
Confidence            6221     11   145778889999999999887544443

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=83.16  E-value=4.4  Score=30.00  Aligned_cols=92  Identities=11%  Similarity=-0.017  Sum_probs=58.7

Q ss_pred             CCCcceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCC-C-----------CCC-Cce
Q 021707          158 FKGVKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFN-S-----------IPA-ANA  222 (309)
Q Consensus       158 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~-~-----------~p~-~D~  222 (309)
                      .....+|+-+||| .|.++..+++.. +.+ ++++|. +.-++.+++..--..+..|-.. .           .+. .|+
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~-vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~  101 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNV  101 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSE
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhh-ccc-ccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCce
Confidence            5667788889987 788888888776 578 999998 5556666554221222222211 1           122 366


Q ss_pred             eeehhhhhcCChhHHHHHHHHHHHhcCCCcEEEEecc
Q 021707          223 IFMKWVLATWTDDECKLIMENCYKALLAGGKLIACEP  259 (309)
Q Consensus       223 i~~~~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e~  259 (309)
                      ++-.-     ..   ...+..+.+.++|+|++++.-.
T Consensus       102 vid~~-----g~---~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2         102 TIDCS-----GN---EKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             EEECS-----CC---HHHHHHHHHHSCTTCEEEECSC
T ss_pred             eeecC-----CC---hHHHHHHHHHHhcCCceEEEec
Confidence            65321     11   2567888899999999999864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=82.69  E-value=0.47  Score=36.14  Aligned_cols=88  Identities=17%  Similarity=0.159  Sum_probs=50.7

Q ss_pred             ceEEEecCCccHHHH-HHHHhcCCCceEEEeec-hhHHhhCCCC-------CCceEE------eCCCCCCCCCCceeeeh
Q 021707          162 KRLVDVGGSAGDCLR-MILQKHHFICEGINFDL-PEVVGEAPSI-------PGVTHI------GGDMFNSIPAANAIFMK  226 (309)
Q Consensus       162 ~~vlDvG~G~G~~~~-~l~~~~p~~~~~~~~D~-p~~~~~a~~~-------~ri~~~------~~d~~~~~p~~D~i~~~  226 (309)
                      .+|.=||+|.-..+. ..+.. -+.. ++++|. ++-++..++.       +.....      ..|..+..+.+|+|++.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~-~G~~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLAL-KGQS-VLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCE-EEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CEEEEECccHHHHHHHHHHHH-CCCE-EEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            578889998544333 23333 2567 999998 4444443321       111111      12221114456888875


Q ss_pred             hhhhcCChhHHHHHHHHHHHhcCCCcEEEE
Q 021707          227 WVLATWTDDECKLIMENCYKALLAGGKLIA  256 (309)
Q Consensus       227 ~vlh~~~d~~~~~iL~~~~~aL~pgG~l~i  256 (309)
                      -     +......++++++..|+++..+++
T Consensus        80 v-----~~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          80 V-----PAIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             S-----CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             E-----chhHHHHHHHHhhhccCCCCEEEE
Confidence            3     444567899999999998876553

>d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Transcriptional regulator YydK
species: Bacillus subtilis [TaxId: 1423]

Probab=82.27  E-value=0.94  Score=29.79  Aligned_cols=44  Identities=16%  Similarity=0.228  Sum_probs=37.3

Q ss_pred             CCCC-CHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEc
Q 021707           17 NTPL-SVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSL   67 (309)
Q Consensus        17 ~~~~-t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~   67 (309)
                      +..+ |..+||+..    +++...+++-|..|...|++....   +.|.|-.
T Consensus        19 G~~LPse~~La~~~----~vSr~tvr~Al~~L~~~Gli~~~~---g~G~~V~   63 (78)
T d3bwga1          19 GDKLPVLETLMAQF----EVSKSTITKSLELLEQKGAIFQVR---GSGIFVR   63 (78)
T ss_dssp             TCBCCCHHHHHHHT----TCCHHHHHHHHHHHHHTTSEEEET---TTEEEEC
T ss_pred             cCCCcCHHHHHHHH----CCCHHHHHHHHHHHHHCCcEEEEc---CcEEEEc
Confidence            3466 899999999    999999999999999999999886   2455544

>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=82.03  E-value=0.69  Score=30.53  Aligned_cols=43  Identities=19%  Similarity=0.227  Sum_probs=34.8

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecccccCceEEcCh
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHREFRGERKYSLTE   69 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~~~~~~~y~~t~   69 (309)
                      =|+|-+|||..+    |++...+.|.|..|...|+++..+     +.+.+..
T Consensus        29 ~~lt~~elA~~~----g~sretvsr~l~~l~~~glI~~~~-----~~i~I~d   71 (80)
T d3e5ua1          29 MPLSQKSIGEIT----GVHHVTVSRVLASLKRENILDKKK-----NKIIVYN   71 (80)
T ss_dssp             SCCCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEC---------CEESC
T ss_pred             eCCCHHHHHHHH----CCCHHHHHHHHHHHHHCCcEEecC-----CEEEEcC
Confidence            378999999999    999999999999999999998763     4555543

>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Fatty acid responsive transcription factor FadR, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.70  E-value=0.87  Score=29.77  Aligned_cols=37  Identities=22%  Similarity=0.257  Sum_probs=34.1

Q ss_pred             CCCC-CHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707           17 NTPL-SVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus        17 ~~~~-t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      +..+ |..+||+..    +++..-+++-+..|+..|++....
T Consensus        24 G~~LPs~~eLa~~~----~vSr~tvr~Al~~L~~~G~i~~~~   61 (74)
T d1hw1a1          24 GTILPAERELSELI----GVTRTTLREVLQRLARDGWLTIQH   61 (74)
T ss_dssp             TSBCCCHHHHHHHH----TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred             cCCCccHHHHHHHH----CCCHHHHHHHHHHHHHCCcEEEEe
Confidence            3467 899999999    999999999999999999999886

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.09  E-value=1.4  Score=32.98  Aligned_cols=90  Identities=9%  Similarity=0.024  Sum_probs=55.8

Q ss_pred             CCCcceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEeCCCCCC-------CCCCc-eeeehh
Q 021707          158 FKGVKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIGGDMFNS-------IPAAN-AIFMKW  227 (309)
Q Consensus       158 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~~d~~~~-------~p~~D-~i~~~~  227 (309)
                      .+...+|+=+|+| .|.++..+++.. +.+ ++++|. +.-++.+++..--+++..+-.+.       .+..| ++....
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~-Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~  102 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAM-GLH-VAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV  102 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCE-EEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHc-CCc-cceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc
Confidence            5667788889986 677777888776 578 999998 55566665543333332211111       11123 333221


Q ss_pred             hhhcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          228 VLATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       228 vlh~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                            .   ...+..+.+.|+|+|+++++-
T Consensus       103 ------~---~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         103 ------S---NSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             ------C---HHHHHHHHTTEEEEEEEEECC
T ss_pred             ------c---chHHHHHHHHhcCCcEEEEEE
Confidence                  1   245788889999999999985

>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcription factor E/IIe-alpha, N-terminal domain
domain: Transcription factor E/IIe-alpha, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=80.91  E-value=0.47  Score=32.30  Aligned_cols=45  Identities=18%  Similarity=0.231  Sum_probs=38.2

Q ss_pred             hhhhhhcC-CCCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeec
Q 021707            9 GRKKVRLA-NTPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHR   57 (309)
Q Consensus         9 g~~~~~l~-~~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~   57 (309)
                      .+++.++. .+.+|=++||+.+    |++...+++.|..|...|+++...
T Consensus        22 ~v~~~L~~~~~evtDe~iA~~t----gi~in~VRk~Ly~L~~~~L~~y~R   67 (88)
T d1q1ha_          22 DVLRILLDKGTEMTDEEIANQL----NIKVNDVRKKLNLLEEQGFVSYRK   67 (88)
T ss_dssp             HHHHHHHHHCSCBCHHHHHHTT----TSCHHHHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHhccCcCCHHHHHHHh----CCcHHHHHHHHHHHHhCCceEEEE
Confidence            35555553 4689999999999    999999999999999999997654

>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator DR1159
species: Deinococcus radiodurans [TaxId: 1299]

Probab=80.90  E-value=0.38  Score=36.98  Aligned_cols=55  Identities=18%  Similarity=0.184  Sum_probs=43.7

Q ss_pred             CCCCHHHHHHHhCcCCCCCcchHHHHHHHHHcCCceeeecc--cccCceEEcChhchhhhc
Q 021707           18 TPLSVSQILTCILPSGGGDAENLQCILRLLTSYGVFSEHRE--FRGERKYSLTEIGKSLVT   76 (309)
Q Consensus        18 ~~~t~~eLA~~~~~~~g~~~~~l~rlL~~L~~~gll~~~~~--~~~~~~y~~t~~~~~l~~   76 (309)
                      +++|..|||+.+    +++...+.++++-|+..|+|++...  |...-.+++|+.|..+..
T Consensus        78 ~~lt~~eLa~~l----~i~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~~  134 (172)
T d2fbka1          78 EGLRPTELSALA----AISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT  134 (172)
T ss_dssp             SCBCHHHHHHHC----SCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred             CCcCHHHHHHHH----CcCHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHHH
Confidence            458999999999    9999999999999999999998752  111234788888876664

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.24  E-value=0.77  Score=34.75  Aligned_cols=92  Identities=14%  Similarity=0.016  Sum_probs=55.7

Q ss_pred             CCCcceEEEecCC-ccHHHHHHHHhcCCCceEEEeec-hhHHhhCCCCCCceEEe-CCCCC---CCCC-Cceeeeh-hhh
Q 021707          158 FKGVKRLVDVGGS-AGDCLRMILQKHHFICEGINFDL-PEVVGEAPSIPGVTHIG-GDMFN---SIPA-ANAIFMK-WVL  229 (309)
Q Consensus       158 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~~D~-p~~~~~a~~~~ri~~~~-~d~~~---~~p~-~D~i~~~-~vl  229 (309)
                      ...+.+|+-+|+| .|.++..+++.. +.+ ++++|. ++-++.+++..--+++. .+-.+   .... .|+++-. ...
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~-vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~  102 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAE-TYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL  102 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHH-TCE-EEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhc-ccc-ccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence            6677889999988 788888888775 788 999997 44455555432112222 11111   1223 3766642 222


Q ss_pred             hcCChhHHHHHHHHHHHhcCCCcEEEEec
Q 021707          230 ATWTDDECKLIMENCYKALLAGGKLIACE  258 (309)
Q Consensus       230 h~~~d~~~~~iL~~~~~aL~pgG~l~i~e  258 (309)
                      +...       +..+.+.|+|+|+++++-
T Consensus       103 ~~~~-------~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         103 TDID-------FNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             TTCC-------TTTGGGGEEEEEEEEECC
T ss_pred             ccch-------HHHHHHHhhccceEEEec
Confidence            2111       334667899999999985