Citrus Sinensis ID: 021720

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MRNQSEGGNVNLQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL
Secondary Structure (PSIPRED)
cccccccccEEEcccccEEEEEEEEEccHHHHHHHHHHHcccccccccccEEEcccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHccccHHHHHccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEccccEEccEEEEEEEEEccccccccEEEEEEEcccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccEEEEEEEHccccHHHHHHHEHcccccccccccEEEccccccccccccccEEEccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEcccccccccEEccccccccEEEEEccccccccccccccHHHHEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEcccEEEEEEEEEEEEEccccccEEEEEEEEEccccEEEEccc
Coil and Loop (DISEMBL)
mrnqseggnvnlqscggQLIDVAFYKMTSNDIFEKLIMvsdmkpssfglglitksmsfpthppthsqfvqsggwlkspnlfyslkseanpvpvTSILLKMQSFRGSIRLIQRHaltssntcsipngvvstksvghSFHSLNNYLSRSLHLLATRSqvkygyqteswgssnyyirtsgpglfppammephfanrcistsessvesasyppaaassdlaprikfkrLDKTARHIMQILDKEAVEnvksqreipdikpgyiVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAgvgveslfpl
Flexible Loop (DISEMBL)
mrnqseggnvnlqscgGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHAltssntcsiPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASyppaaassdlapriKFKRLDKTARHIMQILDkeavenvksqreipdikpgyivqlkvvipenkrrvstlkgiviarrnagisttfrlrrlvagvgveslfpl
Low Complexity Region (SEG)
MRNQSEGGNVNLQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCIstsessvesasyppaaassDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL
Disordered region (IsUnstruct)
***********LQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSM**********QFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPA*************************************FKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVES****
Disordered Region (DISOPRED)
************QSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRL*************************************S***********************************************************************************HIMQILDKEAVENVK*QREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL
Disordered Region (DISEMBL)
*********VNLQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCI*****************SSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL
Disordered Region (DISPRO)
**********NLQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSV*HSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCI********************LAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNQSEGGNVNLQSCGGQLIDVAFYKMTSNDIFEKLIMVSDMKPSSFGLGLITKSMSFPTHPPTHSQFVQSGGWLKSPNLFYSLKSEANPVPVTSILLKMQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
P82413	233	50S ribosomal protein L19	N/A	no	0.314	0.416	0.463	8e-19
Q8W463	225	50S ribosomal protein L19	no	no	0.441	0.604	0.364	5e-15
Q8RXX5	229	50S ribosomal protein L19	no	no	0.25	0.336	0.519	3e-14
Q2RV56	163	50S ribosomal protein L19	yes	no	0.253	0.478	0.392	1e-09
B6IP95	132	50S ribosomal protein L19	yes	no	0.253	0.590	0.405	1e-09
Q2VZV5	148	50S ribosomal protein L19	yes	no	0.253	0.527	0.379	2e-09
A5G0G7	124	50S ribosomal protein L19	yes	no	0.253	0.629	0.367	3e-09
B5YK97	120	50S ribosomal protein L19	yes	no	0.224	0.575	0.442	4e-09
P30529	116	50S ribosomal protein L19	N/A	no	0.237	0.629	0.405	4e-09
C5D8U6	116	50S ribosomal protein L19	yes	no	0.237	0.629	0.417	5e-09

>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2

 Score = 94.7 bits (234), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/110 (46%), Positives = 68/110 (61%), Gaps = 13/110 (11%)

Query: 199 ESSVESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYI 258
           ES  E+   PP      L               IM IL+K+AV   +  R +P I+ G I
Sbjct: 102 ESEAEAEERPPRQQRVKLG-------------DIMGILNKKAVHAAEELRPVPGIRTGDI 148

Query: 259 VQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           VQ+++ +PENKRR+S  KGIVI+R+NAGI TT R+RR++AGVGVE +FPL
Sbjct: 149 VQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPL 198

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.
Spinacia oleracea (taxid: 3562)

>sp|Q8W463|RK191_ARATH 50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 15/151 (9%)

Query: 158 KYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASSDLA 217
           K+G+  ++   + + +R         A  E   A   I+ +E +VE        A     
Sbjct: 55  KFGFSLDTRVRNEFIVRAEEGNT--EAESEEFVAE--IADTEGNVEEV----VEAKPTRK 106

Query: 218 PRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKG 277
           PRIK          +M IL+++A+E  +  R +P+I+ G IV++K+ +PENKRR+S  KG
Sbjct: 107 PRIKLG-------DVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKG 159

Query: 278 IVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           IV++R+NAGI TT R+RR++AG+GVE +FP+
Sbjct: 160 IVMSRQNAGIHTTIRIRRIIAGIGVEIVFPI 190

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXX5|RK192_ARATH 50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 63/77 (81%)

Query: 232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
           IM +L+K+A+E  ++ R +P ++ G IV++K+ +PENKRR+S  KGIV++R+NAGI TT 
Sbjct: 118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 177

Query: 292 RLRRLVAGVGVESLFPL 308
           R+RR++AG+GVE +FP+
Sbjct: 178 RIRRIIAGIGVEIVFPI 194

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2RV56|RL19_RHORT 50S ribosomal protein L19 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplS PE=3 SV=1

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
           +I++  +KE +E +  QR +P   PG  +++ V VI  N++RV   +G+ IARRNA +++
Sbjct: 2   NIIEQFEKEQIEKLLEQRGVPQFSPGDTLRVHVKVIEGNRQRVQVYEGVCIARRNAALNS 61

Query: 290 TFRLRRLVAGVGVESLFPL 308
           +F +R++  G GVE +FPL
Sbjct: 62  SFTVRKISFGEGVERIFPL 80

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

>sp|B6IP95|RL19_RHOCS 50S ribosomal protein L19 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rplS PE=3 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
           +I+Q L++E V  + + + IP   PG  V++ V + E  R RV   +G+VIAR+NAG+++
Sbjct: 2   NILQQLEQEQVAKLTAGKTIPAFSPGDTVRVNVKVVEGTRERVQAYEGVVIARKNAGLNS 61

Query: 290 TFRLRRLVAGVGVESLFPL 308
           +F +R++  G GVE +FPL
Sbjct: 62  SFTVRKISYGEGVERVFPL 80

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Rhodospirillum centenum (strain ATCC 51521 / SW) (taxid: 414684)

>sp|Q2VZV5|RL19_MAGSA 50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
           +I++ L+KE +E + + R +P   PG  +++ V VI  N+ RV   +G+ IAR+N G+++
Sbjct: 3   NIIEQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNS 62

Query: 290 TFRLRRLVAGVGVESLFPL 308
           +F +R++  G GVE +FPL
Sbjct: 63  SFVVRKISYGEGVERIFPL 81

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|A5G0G7|RL19_ACICJ 50S ribosomal protein L19 OS=Acidiphilium cryptum (strain JF-5) GN=rplS PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
           +++Q +D E +  +   R +PD KPG  +++ V + E +R R+   +G+ IAR N GI++
Sbjct: 2   NVIQTIDAEQIGKLAEARAVPDFKPGDNLRVSVRVTEGERTRIQAFEGVCIARSNRGINS 61

Query: 290 TFRLRRLVAGVGVESLFPL 308
            F +R++  G GVE +FPL
Sbjct: 62  NFTVRKISYGEGVERVFPL 80

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Acidiphilium cryptum (strain JF-5) (taxid: 349163)

>sp|B5YK97|RL19_THEYD 50S ribosomal protein L19 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=rplS PE=3 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 1/70 (1%)

Query: 240 AVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVA 298
           A+E    +  IPD KPG  V++ V + E +K R+   +G+VIARR  G+  TF +R++  
Sbjct: 8   AIEERFKKSNIPDFKPGDTVKVHVKVKEGDKERIQVFEGVVIARRGGGLRETFTVRKISF 67

Query: 299 GVGVESLFPL 308
           GVGVE +FPL
Sbjct: 68  GVGVERVFPL 77

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) (taxid: 289376)

>sp|P30529|RL19_GEOSE 50S ribosomal protein L19 OS=Geobacillus stearothermophilus GN=rplS PE=3 SV=1

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 6/79 (7%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
           H++Q + KE +       ++PD +PG  V++ V V+  N+ R+   +G+VI RR AGIS 
Sbjct: 3   HLIQEITKEQLRT-----DLPDFRPGDTVRVHVKVVEGNRERIQVFEGVVIKRRGAGISE 57

Query: 290 TFRLRRLVAGVGVESLFPL 308
           TF +R++  GVGVE  FP+
Sbjct: 58  TFTVRKVSYGVGVERTFPV 76

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Geobacillus stearothermophilus (taxid: 1422)

>sp|C5D8U6|RL19_GEOSW 50S ribosomal protein L19 OS=Geobacillus sp. (strain WCH70) GN=rplS PE=3 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 50/79 (63%), Gaps = 6/79 (7%)

Query: 231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGIST 289
           H++Q + KE +       ++PD +PG  V++ V VI  N+ R+   +G+VI RR AGIS 
Sbjct: 4   HLIQEITKEQLRT-----DLPDFRPGDTVRVHVKVIEGNRERIQVFEGVVIKRRGAGISE 58

Query: 290 TFRLRRLVAGVGVESLFPL 308
           TF +R++  GVGVE  FP+
Sbjct: 59  TFTVRKVSYGVGVERTFPV 77

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Geobacillus sp. (strain WCH70) (taxid: 471223)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
297733693	270	unnamed protein product [Vitis vinifera]	0.685	0.781	0.567	6e-54
225456876	243	PREDICTED: uncharacterized protein LOC10	0.665	0.843	0.574	7e-54
255557847	248	50S ribosomal protein L19, putative [Ric	0.665	0.826	0.536	2e-48
397787590	260	putative 50S ribosomal protein L19 [Bras	0.607	0.719	0.488	4e-44
356569639	236	PREDICTED: 50S ribosomal protein L19, ch	0.477	0.622	0.668	6e-44
449499757	189	PREDICTED: 50S ribosomal protein L19, ch	0.496	0.809	0.623	9e-44
449443361	269	PREDICTED: 50S ribosomal protein L19, ch	0.685	0.784	0.484	1e-43
356523817	231	PREDICTED: 50S ribosomal protein L19, ch	0.477	0.636	0.662	4e-43
255540489	190	50S ribosomal protein L19, putative [Ric	0.470	0.763	0.601	9e-42
18395422	222	Ribosomal protein L19 family protein [Ar	0.597	0.828	0.488	1e-41

>gi|297733693|emb|CBI14940.3| unnamed protein product [Vitis vinifera]

 Score =  217 bits (552), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 126/222 (56%), Positives = 156/222 (70%), Gaps = 11/222 (4%)

Query: 92  PVTSILLKMQSFRGSIRLIQRHALTSSNTCSIP--NGVVSTKSV-GHSFHS-LNNYLSRS 147
           P+ SI  +MQSFRG IR    H   ++  CS    +GVV+  ++ G SF S +  + SRS
Sbjct: 22  PLRSI--EMQSFRGGIRSKIVHFKLATRLCSFETNDGVVAVANLCGKSFDSSIRKFTSRS 79

Query: 148 LHLLATRSQVKYGYQTESWGSSNYYI-RTSGPGLFPPAMMEPHFANRCISTSESSVESAS 206
              L    Q K+G Q E +  S   + R+S  GLF      P F +RCI+T+ + + ++ 
Sbjct: 80  SLPL----QSKFGSQAEFFTPSGSLLDRSSRSGLFQWTAAMPTFPSRCITTTVNPISASQ 135

Query: 207 YPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIP 266
              AA  SDLAPRIKFKRLDKT++HIMQILDKEAVE V+++REIP+IKPGYIVQLKV +P
Sbjct: 136 DSSAAPVSDLAPRIKFKRLDKTSKHIMQILDKEAVEEVRAKREIPEIKPGYIVQLKVEVP 195

Query: 267 ENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           ENKRR S LKGIVIARRNAG++TTFRLRRLVAGVGVESLFPL
Sbjct: 196 ENKRRTSVLKGIVIARRNAGLNTTFRLRRLVAGVGVESLFPL 237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456876|ref|XP_002277262.1| PREDICTED: uncharacterized protein LOC100255272 [Vitis vinifera]

 Score =  216 bits (551), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 123/214 (57%), Positives = 151/214 (70%), Gaps = 9/214 (4%)

Query: 100 MQSFRGSIRLIQRHALTSSNTCSIP--NGVVSTKSV-GHSFHS-LNNYLSRSLHLLATRS 155
           MQSFRG IR    H   ++  CS    +GVV+  ++ G SF S +  + SRS   L    
Sbjct: 1   MQSFRGGIRSKIVHFKLATRLCSFETNDGVVAVANLCGKSFDSSIRKFTSRSSLPL---- 56

Query: 156 QVKYGYQTESWGSSNYYI-RTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASS 214
           Q K+G Q E +  S   + R+S  GLF      P F +RCI+T+ + + ++    AA  S
Sbjct: 57  QSKFGSQAEFFTPSGSLLDRSSRSGLFQWTAAMPTFPSRCITTTVNPISASQDSSAAPVS 116

Query: 215 DLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVST 274
           DLAPRIKFKRLDKT++HIMQILDKEAVE V+++REIP+IKPGYIVQLKV +PENKRR S 
Sbjct: 117 DLAPRIKFKRLDKTSKHIMQILDKEAVEEVRAKREIPEIKPGYIVQLKVEVPENKRRTSV 176

Query: 275 LKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           LKGIVIARRNAG++TTFRLRRLVAGVGVESLFPL
Sbjct: 177 LKGIVIARRNAGLNTTFRLRRLVAGVGVESLFPL 210

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557847|ref|XP_002519953.1| 50S ribosomal protein L19, putative [Ricinus communis] gi|223540999|gb|EEF42557.1| 50S ribosomal protein L19, putative [Ricinus communis]

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/218 (53%), Positives = 148/218 (67%), Gaps = 13/218 (5%)

Query: 100 MQSFRGSIRLIQRHALTSSNTCSIPN-----GVVSTKSVGHSFHSLNNYLSRSLHLLATR 154
           MQSF  S  LI+R  LTSS+  ++ +       ++ K+ G +FH  N   +   HL  + 
Sbjct: 1   MQSFCRS--LIRRQTLTSSSYFTVTHFKSVGASLAIKNNGSNFHGFNGVTTSKDHLFGSF 58

Query: 155 SQV---KYGYQTESWG-SSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPA 210
                 K G   ++   SS    R+S       A+  P    R ++T+ +SVESA+  P+
Sbjct: 59  HHFNLKKSGTGMDTLTLSSGCNCRSSSLCFRKDAI--PPLPRRNMTTTGNSVESATTVPS 116

Query: 211 AASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR 270
           A++ + AP IKFKRLDKTARHIMQILDKEAV+ VK+QREIPDI+PGYIVQLKV +PENKR
Sbjct: 117 ASTVNAAPNIKFKRLDKTARHIMQILDKEAVQEVKTQREIPDIRPGYIVQLKVEVPENKR 176

Query: 271 RVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           RVS +KGIVIARRNAG++TTFRLRRLVAGVGVESLFPL
Sbjct: 177 RVSIVKGIVIARRNAGLNTTFRLRRLVAGVGVESLFPL 214

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397787590|gb|AFO66496.1| putative 50S ribosomal protein L19 [Brassica napus]

 Score =  184 bits (467), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/221 (48%), Positives = 145/221 (65%), Gaps = 34/221 (15%)

Query: 99  KMQSFRGSIRLIQRHALTSSNTCSIPNGVVS---------TKSVG--HSFHSLNNYLSRS 147
           KMQS R S RL+QR+  +SSNT  +P    S         ++  G   SF+   ++ S +
Sbjct: 29  KMQSIRSSTRLLQRNRFSSSNT--LPRFTSSFSPSWSENESRRPGGFDSFNPTRDFNSPA 86

Query: 148 LHLLATRSQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASY 207
            +L+++ ++          GS +  +         P      +A+RC ST   SV+S   
Sbjct: 87  KYLISSLTKA---------GSFSSAV---------PPRQNFTYASRCFSTVGDSVQST-- 126

Query: 208 PPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE 267
            P  ++ D+ PRIKFKRLDKTA+HIMQI+DKEAVE V++ REIP+I+PGYIVQLKV +PE
Sbjct: 127 -PQGSAPDMVPRIKFKRLDKTAKHIMQIVDKEAVEEVRNGREIPEIRPGYIVQLKVEVPE 185

Query: 268 NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           NKRRVS +KGIVIARRNAG+++TFR+RRLVAGVGVES+FPL
Sbjct: 186 NKRRVSIVKGIVIARRNAGLNSTFRIRRLVAGVGVESMFPL 226

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569639|ref|XP_003553006.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Glycine max]

 Score =  184 bits (466), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 99/148 (66%), Positives = 118/148 (79%), Gaps = 1/148 (0%)

Query: 162 QTESWGSSNYYIRTSGPGLFPPAM-MEPHFANRCISTSESSVESASYPPAAASSDLAPRI 220
           Q ES       +R+SG GL+ PA  + P FA+R +ST  +SV+S+S   +    ++ PRI
Sbjct: 56  QFESGNGLASVLRSSGMGLYQPAGGLVPPFASRFMSTEATSVDSSSQDSSMLEPEVPPRI 115

Query: 221 KFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVI 280
           KFKRLDKTARHIMQILDKEAVE V+ QREIPDIKPGYIVQLKV +PENKRRVS +KGIVI
Sbjct: 116 KFKRLDKTARHIMQILDKEAVEEVRGQREIPDIKPGYIVQLKVEVPENKRRVSIIKGIVI 175

Query: 281 ARRNAGISTTFRLRRLVAGVGVESLFPL 308
           ARRNAG++TTFR+RR VAGVG+ESLFPL
Sbjct: 176 ARRNAGLNTTFRIRRQVAGVGIESLFPL 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499757|ref|XP_004160907.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus]

 Score =  183 bits (464), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 96/154 (62%), Positives = 120/154 (77%), Gaps = 1/154 (0%)

Query: 155 SQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASS 214
           SQ+++    +   S+    ++S P  F  A     F++R I+T+ SS+ESA     A  S
Sbjct: 3   SQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATT-SSMESALQGSPAVDS 61

Query: 215 DLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVST 274
            + PRIKFKRLDKT+RHIMQILDKEAVE VK++REIPDIKPGYIVQLKV +PENKRR+ST
Sbjct: 62  VIPPRIKFKRLDKTSRHIMQILDKEAVEEVKARREIPDIKPGYIVQLKVEVPENKRRIST 121

Query: 275 LKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           LKGIVIARRNAG+++TFR+RR+VAGVG+ESLFPL
Sbjct: 122 LKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPL 155

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443361|ref|XP_004139446.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Cucumis sativus]

 Score =  182 bits (463), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/227 (48%), Positives = 149/227 (65%), Gaps = 16/227 (7%)

Query: 97  LLKMQSFRGSIRLIQRHALT--SSNTCSIPNGVVSTKSV----GHSFHSLNNYLSRSLHL 150
           L++ Q    + +LI+ + L   +  +CS P  + ++ ++    G S+ SL     RS   
Sbjct: 10  LVRRQIPDANFKLIRGYPLNGDAGCSCSAPMSMENSFTIPYLFGKSYGSLCGSFLRSFSR 69

Query: 151 LATR---------SQVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESS 201
              +         SQ+++    +   S+    ++S P  F  A     F++R I+T+ SS
Sbjct: 70  SGNQYPEAFKNMSSQMEFVPLRKHASSTFSAFQSSRPHFFQLAETAAPFSSRGIATT-SS 128

Query: 202 VESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQL 261
           +ESA     A  S + PRIKFKRLDKT+RHIMQILDKEAVE VK++REIPDIKPGYIVQL
Sbjct: 129 MESALQGSPAVDSVIPPRIKFKRLDKTSRHIMQILDKEAVEEVKARREIPDIKPGYIVQL 188

Query: 262 KVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           KV +PENKRR+STLKGIVIARRNAG+++TFR+RR+VAGVG+ESLFPL
Sbjct: 189 KVEVPENKRRISTLKGIVIARRNAGLNSTFRIRRVVAGVGIESLFPL 235

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523817|ref|XP_003530531.1| PREDICTED: 50S ribosomal protein L19, chloroplastic-like [Glycine max]

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 118/148 (79%), Gaps = 1/148 (0%)

Query: 162 QTESWGSSNYYIRTSGPGLFPPAM-MEPHFANRCISTSESSVESASYPPAAASSDLAPRI 220
           Q ES       +R+SG GL+  A  + P FA+R +ST  +SV+S+S   +    ++ PRI
Sbjct: 51  QFESGNGLASVLRSSGLGLYQQAGGVVPPFASRFMSTEATSVDSSSQDSSTLEPEVPPRI 110

Query: 221 KFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVI 280
           KFKRLDKTARHIMQILDKEAVE+V+ QREIPDIKPGYIVQLKV +PENKRRVS +KGIVI
Sbjct: 111 KFKRLDKTARHIMQILDKEAVEDVRGQREIPDIKPGYIVQLKVEVPENKRRVSIIKGIVI 170

Query: 281 ARRNAGISTTFRLRRLVAGVGVESLFPL 308
           ARRNAG++TTFR+RR VAGVG+ESLFPL
Sbjct: 171 ARRNAGLNTTFRIRRQVAGVGIESLFPL 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540489|ref|XP_002511309.1| 50S ribosomal protein L19, putative [Ricinus communis] gi|223550424|gb|EEF51911.1| 50S ribosomal protein L19, putative [Ricinus communis]

 Score =  176 bits (447), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 92/153 (60%), Positives = 114/153 (74%), Gaps = 8/153 (5%)

Query: 156 QVKYGYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCISTSESSVESASYPPAAASSD 215
           + K+G QTE+         T   G    A +   F  R + T+ +S +  S   +  ++D
Sbjct: 12  ETKFGTQTEAL--------TLSKGNGSSAGLSFSFPIRNMITTGNSTKLPSTVSSVPTTD 63

Query: 216 LAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTL 275
            AP+IKFKRLDKTARHIMQILDKE+V+ VK+Q+E+PDI+PGYIVQLKV +PENKRRVS +
Sbjct: 64  AAPKIKFKRLDKTARHIMQILDKESVQEVKAQKEMPDIRPGYIVQLKVEVPENKRRVSIV 123

Query: 276 KGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           KGIVIARRNAG++TTFRLRRLVAGVGVESLFPL
Sbjct: 124 KGIVIARRNAGLNTTFRLRRLVAGVGVESLFPL 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395422|ref|NP_564213.1| Ribosomal protein L19 family protein [Arabidopsis thaliana] gi|2829876|gb|AAC00584.1| Unknown protein [Arabidopsis thaliana] gi|14994249|gb|AAK73259.1| Unknown protein [Arabidopsis thaliana] gi|15146228|gb|AAK83597.1| At1g24240/F3I6_17 [Arabidopsis thaliana] gi|19699146|gb|AAL90939.1| At1g24240/F3I6_17 [Arabidopsis thaliana] gi|332192378|gb|AEE30499.1| Ribosomal protein L19 family protein [Arabidopsis thaliana]

 Score =  176 bits (446), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/213 (48%), Positives = 134/213 (62%), Gaps = 29/213 (13%)

Query: 100 MQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKY 159
           MQ  RGS RL+QRH  + SNT    +    + S   S                     K 
Sbjct: 1   MQLIRGSTRLLQRHRFSISNTLPFTSSSCGSWSANES--------------------RKL 40

Query: 160 GYQT-ESWGSSNYYIRTSGPGLFPPAMMEP--HFANRCISTSESSVESASYPPAAASSDL 216
           G+ +  S  ++ Y I +     F    + P  +F++RC ST+  SV+ +       S  +
Sbjct: 41  GFDSFPSTRAATYLISSLKNAGFSSLAVVPKQNFSSRCFSTTGDSVQGS-----PESDCV 95

Query: 217 AP-RIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTL 275
            P RIKFKRLDKTA+HIMQI+DKEAVE V++ REIP+IKPGYIVQLKV +PENKRRVS +
Sbjct: 96  VPQRIKFKRLDKTAKHIMQIVDKEAVEEVRTLREIPEIKPGYIVQLKVEVPENKRRVSIV 155

Query: 276 KGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           KG+VIARRNAG+++TFR+RRLVAGVGVES+FPL
Sbjct: 156 KGVVIARRNAGLNSTFRIRRLVAGVGVESMFPL 188

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2139757	225	AT4G11630 [Arabidopsis thalian	0.292	0.4	0.822	3.2e-41
TAIR|locus:2181975	229	AT5G11750 [Arabidopsis thalian	0.633	0.851	0.464	6.3e-37
TAIR|locus:2032457	222	AT1G24240 [Arabidopsis thalian	0.548	0.761	0.5	1.9e-35
TAIR|locus:2129186	225	AT4G17560 [Arabidopsis thalian	0.25	0.342	0.519	1.4e-18
TAIR|locus:2171609	229	AT5G47190 [Arabidopsis thalian	0.25	0.336	0.519	1.7e-18
TIGR_CMR|CHY_1428	113	CHY_1428 "ribosomal protein L1	0.227	0.619	0.366	4.1e-09
TIGR_CMR|CBU_0442	115	CBU_0442 "ribosomal protein L1	0.240	0.643	0.367	8.9e-09
TIGR_CMR|GSU_0648	118	GSU_0648 "ribosomal protein L1	0.227	0.593	0.366	2.5e-08
TIGR_CMR|BA_3978	114	BA_3978 "ribosomal protein L19	0.243	0.657	0.376	5.4e-08
UNIPROTKB|P0A7K6	115	rplS "50S ribosomal subunit pr	0.214	0.573	0.358	8.9e-08

TAIR|locus:2139757 AT4G11630 [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 74/90 (82%), Positives = 86/90 (95%)

Query:   219 RIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGI 278
             RIKFKRLDKTA+HIMQI+DKEAVE V+S REIP+IKPGYIVQLKV +PENKRRVS +KG+
Sbjct:   102 RIKFKRLDKTAKHIMQIVDKEAVEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGV 161

Query:   279 VIARRNAGISTTFRLRRLVAGVGVESLFPL 308
             VIARRNAG+++TFR+RRLVAGVGVES+FPL
Sbjct:   162 VIARRNAGLNSTFRIRRLVAGVGVESMFPL 191

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TAIR|locus:2181975 AT5G11750 [Arabidopsis thaliana (taxid:3702)]

 Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
 Identities = 97/209 (46%), Positives = 125/209 (59%)

Query:   100 MQSFRGSIRLIQRHALTSSNTCSIPNGVVSTKSVGHSFHSLNNYLSRSLHLLATRSQVKY 159
             MQS R S RL+QRH  + SNT    +   S+ S   +   +  + S       TR+    
Sbjct:     1 MQSIRSSTRLLQRHRFSISNTLRFTSSSSSSGSWSENESRMVGFDS----FPCTRAATYL 56

Query:   160 GYQTESWGSSNYYIRTSGPGLFPPAMMEPHFANRCIXXXXXXXXXXXXXXXXXXXDLAPR 219
                 ++ G S+  I         P   +  ++ RC                     +  R
Sbjct:    57 ISSLKNVGFSSSAI---------PKQ-DFKYSLRCFSTTGDSVQSTPQGSPESDCVVPQR 106

Query:   220 IKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIV 279
             IKFKRLDKTA+HIMQI+DKEAVE V++ REIP+IKPGYIVQLKV +PENKRRVS +KG+V
Sbjct:   107 IKFKRLDKTAKHIMQIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVV 166

Query:   280 IARRNAGISTTFRLRRLVAGVGVESLFPL 308
             IARRNAG+++TFR+RRLVAGVGVES+FPL
Sbjct:   167 IARRNAGLNSTFRIRRLVAGVGVESMFPL 195

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0042254 "ribosome biogenesis" evidence=ISS

TAIR|locus:2032457 AT1G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 90/180 (50%), Positives = 116/180 (64%)

Query:   135 HSFHSLNNYL---SRSLHLLATRSQVKYGYQT-ESWGSSNYYIRTSGPGLFPPAMMEP-- 188
             H F S++N L   S S    +     K G+ +  S  ++ Y I +     F    + P  
Sbjct:    14 HRF-SISNTLPFTSSSCGSWSANESRKLGFDSFPSTRAATYLISSLKNAGFSSLAVVPKQ 72

Query:   189 HFANRCIXXXXXXXXXXXXXXXXXXXDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQR 248
             +F++RC                     +  RIKFKRLDKTA+HIMQI+DKEAVE V++ R
Sbjct:    73 NFSSRCFSTTGDSVQGSPESDCV----VPQRIKFKRLDKTAKHIMQIVDKEAVEEVRTLR 128

Query:   249 EIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
             EIP+IKPGYIVQLKV +PENKRRVS +KG+VIARRNAG+++TFR+RRLVAGVGVES+FPL
Sbjct:   129 EIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGVGVESMFPL 188

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2129186 AT4G17560 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 40/77 (51%), Positives = 63/77 (81%)

Query:   232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
             +M IL+++A+E  +  R +P+I+ G IV++K+ +PENKRR+S  KGIV++R+NAGI TT 
Sbjct:   114 VMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 173

Query:   292 RLRRLVAGVGVESLFPL 308
             R+RR++AG+GVE +FP+
Sbjct:   174 RIRRIIAGIGVEIVFPI 190

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2171609 AT5G47190 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 40/77 (51%), Positives = 63/77 (81%)

Query:   232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
             IM +L+K+A+E  ++ R +P ++ G IV++K+ +PENKRR+S  KGIV++R+NAGI TT 
Sbjct:   118 IMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTI 177

Query:   292 RLRRLVAGVGVESLFPL 308
             R+RR++AG+GVE +FP+
Sbjct:   178 RIRRIIAGIGVEIVFPI 194

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TIGR_CMR|CHY_1428 CHY_1428 "ribosomal protein L19" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 139 (54.0 bits), Expect = 4.1e-09, P = 4.1e-09
 Identities = 26/71 (36%), Positives = 48/71 (67%)

Query:   239 EAVENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
             +++E  + ++++P+ +PG  V++   VI  N+ R+   +G+VI +R +G+S TF +RR+ 
Sbjct:     5 KSLEEEQLRKDLPEFRPGDTVKVYFKVIEGNRERIQPYEGVVIRKRGSGLSATFTVRRVS 64

Query:   298 AGVGVESLFPL 308
              G+GVE  FPL
Sbjct:    65 YGIGVERTFPL 75

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CBU_0442 CBU_0442 "ribosomal protein L19" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 136 (52.9 bits), Expect = 8.9e-09, P = 8.9e-09
 Identities = 29/79 (36%), Positives = 52/79 (65%)

Query:   231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGIST 289
             +I+Q+L+ E  +     +EIPD + G  V ++V + E N+ R+   +G+VIARR+ G+++
Sbjct:     3 NIIQLLETEQTQG----KEIPDFRAGDTVTVQVKVKEGNRERLQAFEGVVIARRHRGLNS 58

Query:   290 TFRLRRLVAGVGVESLFPL 308
             +F +R++  G GVE +F L
Sbjct:    59 SFTVRKVSHGEGVERVFQL 77

GO:0003735 "structural constituent of ribosome" evidence=ISS

TIGR_CMR|GSU_0648 GSU_0648 "ribosomal protein L19" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 132 (51.5 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 26/71 (36%), Positives = 46/71 (64%)

Query:   239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
             +A+E  + ++ IP  KPG  +++ V I E +K R+   +G+ I+R+N GI  +F +R++ 
Sbjct:     5 DAIELEQMKKNIPPFKPGDTLKVHVKIVEGDKSRIQAFQGVCISRQNGGIRESFTVRKIS 64

Query:   298 AGVGVESLFPL 308
               +GVE +FPL
Sbjct:    65 NNIGVERVFPL 75

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|BA_3978 BA_3978 "ribosomal protein L19" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 129 (50.5 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 29/77 (37%), Positives = 46/77 (59%)

Query:   233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGISTTF 291
             MQ L  E  +  + + ++P  +PG  +++ V + E  R R+   +G+VI RR  GIS TF
Sbjct:     1 MQQLIAEITKG-QLKTDLPSFRPGDTLRVHVKVVEGTRERIQLFEGVVIKRRGGGISETF 59

Query:   292 RLRRLVAGVGVESLFPL 308
              +R++  GVGVE  FP+
Sbjct:    60 TVRKISYGVGVERTFPV 76

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0A7K6 rplS "50S ribosomal subunit protein L19" [Escherichia coli K-12 (taxid:83333)]

 Score = 127 (49.8 bits), Expect = 8.9e-08, P = 8.9e-08
 Identities = 24/67 (35%), Positives = 45/67 (67%)

Query:   241 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
             +E  + ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G
Sbjct:     8 LEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNG 67

Query:   300 VGVESLF 306
              GVE +F
Sbjct:    68 EGVERVF 74

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
pfam01245	113	pfam01245, Ribosomal_L19, Ribosomal protein L19	1e-20
PRK05338	116	PRK05338, rplS, 50S ribosomal protein L19; Provisi	5e-16
TIGR01024	113	TIGR01024, rplS_bact, ribosomal protein L19, bacte	4e-15
COG0335	115	COG0335, RplS, Ribosomal protein L19 [Translation,	6e-15
CHL00084	117	CHL00084, rpl19, ribosomal protein L19	9e-14

>gnl|CDD|201683 pfam01245, Ribosomal_L19, Ribosomal protein L19

 Score = 84.5 bits (210), Expect = 1e-20
 Identities = 28/77 (36%), Positives = 52/77 (67%), Gaps = 3/77 (3%)

Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTF 291
           M ++ +  +E  + ++++P+ + G  V++ V I E NK R+   +G+VIA+R  G+++TF
Sbjct: 1   MNLIKE--IEAEQLKKDLPEFRVGDTVKVHVKIKEGNKERIQVFEGVVIAKRGRGLNSTF 58

Query: 292 RLRRLVAGVGVESLFPL 308
            +R++  GVGVE +FPL
Sbjct: 59  TVRKISQGVGVERVFPL 75

Length = 113

>gnl|CDD|235418 PRK05338, rplS, 50S ribosomal protein L19; Provisional

 Score = 72.4 bits (179), Expect = 5e-16
 Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 3/77 (3%)

Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTF 291
           M ++ +  +E  + +++IP+ +PG  V++ V + E NK R+   +G+VIARR  G++ TF
Sbjct: 1   MNLIKE--IEAEQLRKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETF 58

Query: 292 RLRRLVAGVGVESLFPL 308
            +R++  GVGVE  FPL
Sbjct: 59  TVRKISYGVGVERTFPL 75

Length = 116

>gnl|CDD|130096 TIGR01024, rplS_bact, ribosomal protein L19, bacterial type

 Score = 70.0 bits (172), Expect = 4e-15
 Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 3/77 (3%)

Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTF 291
             ++ +  +E  + ++++PD + G  V++ V I E  K R+   +G+VIARR  GI  TF
Sbjct: 1   QNLIKQ--IEQEQLKKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETF 58

Query: 292 RLRRLVAGVGVESLFPL 308
            +R++  GVGVE +FPL
Sbjct: 59  TVRKISYGVGVERIFPL 75

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 113

>gnl|CDD|223412 COG0335, RplS, Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

 Score = 69.6 bits (171), Expect = 6e-15
 Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 233 MQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTF 291
           M I   + +E  + +++IP  +PG  V++ V I E +K RV   +G+VIARR  GIS TF
Sbjct: 1   MNIPIIQQLEQEQIKKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETF 60

Query: 292 RLRRLVAGVGVESLFPL 308
            +R++  GVGVE +FPL
Sbjct: 61  TVRKISYGVGVERVFPL 77

Length = 115

>gnl|CDD|177023 CHL00084, rpl19, ribosomal protein L19

 Score = 66.1 bits (162), Expect = 9e-14
 Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
           + +E+   ++ +P I+ G  V++ V+I E NK RV   +G VIA++N+G++TT  +R++ 
Sbjct: 9   KEIESEFLKKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVF 68

Query: 298 AGVGVESLFPL 308
            G+GVE +F L
Sbjct: 69  QGIGVERVFLL 79

Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
COG0335	115	RplS Ribosomal protein L19 [Translation, ribosomal	99.92
CHL00084	117	rpl19 ribosomal protein L19	99.92
TIGR01024	113	rplS_bact ribosomal protein L19, bacterial type. T	99.92
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	99.92
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	99.91
KOG1698	201	consensus Mitochondrial/chloroplast ribosomal prot	99.86

>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=2.6e-25  Score=185.21  Aligned_cols=72  Identities=49%  Similarity=0.880  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       232 LM~iLEKeemEe~r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      +++.|+++++     ++++|+|+|||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         5 ~i~~le~~q~-----~~~iP~f~~GDtvrv~vki~Eg~keR~Q~FeGvVia~r~~G~~~tftvRkis~G~GVEr~Fp~   77 (115)
T COG0335           5 IIQQLEQEQI-----KKDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETFTVRKISYGVGVERVFPL   77 (115)
T ss_pred             HHHHHHHHHH-----HhhCCCCCCCCEEEEEEEEEeCCeEEEeeeeEEEEEECCCCccceEEEEEeecCceEEEEeec
Confidence            6667766655     456999999999999999999 89999999999999999999999999999999999999997

>CHL00084 rpl19 ribosomal protein L19

Probab=99.92  E-value=3.3e-25  Score=184.46  Aligned_cols=62  Identities=42%  Similarity=0.772  Sum_probs=60.6

Q ss_pred             CCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          247 QREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       247 KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      +.++|+|+|||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus        17 ~~~~p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r~~G~~~tftvRki~~gvGVEr~fpl   79 (117)
T CHL00084         17 KKNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVERVFLL   79 (117)
T ss_pred             hcCCCccCCCCEEEEEEEEecCCeeEeceEEEEEEEEeCCCCCeeEEEEEeccCccEEEEEec
Confidence            679999999999999999999 89999999999999999999999999999999999999997

>TIGR01024 rplS_bact ribosomal protein L19, bacterial type

Probab=99.92  E-value=3.6e-25  Score=183.20  Aligned_cols=73  Identities=40%  Similarity=0.819  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       231 nLM~iLEKeemEe~r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      ++|+.++++++     ++++|+|+|||+|+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         2 ~~i~~~e~~~~-----~~~ip~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvR~i~~gvGVEr~fpl   75 (113)
T TIGR01024         2 NLIKQIEQEQL-----KKDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIFPL   75 (113)
T ss_pred             cHHHHHHHHHh-----hcCCCccCCCCEEEEEEEEccCCceEcccEEEEEEEEeCCCCceEEEEEEeccCccEEEEEEc
Confidence            35555555433     679999999999999999999 89999999999999999999999999999999999999997

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=99.92  E-value=3.8e-25  Score=183.71  Aligned_cols=73  Identities=40%  Similarity=0.831  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       231 nLM~iLEKeemEe~r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      ++|+.++++++     ++++|+|++||+|+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         2 ~~i~~~~~~~~-----~~~~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl   75 (116)
T PRK05338          2 NLIKEIEAEQL-----RKDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTFPL   75 (116)
T ss_pred             cHHHHHHHHHh-----hcCCCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEeCCCCCceEEEEEcccCccEEEEecC
Confidence            35566555444     578999999999999999999 89999999999999999999999999999999999999997

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.91  E-value=2.1e-24  Score=177.77  Aligned_cols=68  Identities=43%  Similarity=0.809  Sum_probs=63.4

Q ss_pred             HHHhhcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          241 VENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       241 mEe~r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      +|+.+.+.++|+|+|||+|+|++++.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++|||
T Consensus         7 ~e~~~~~~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvIa~~~~g~~ssftlR~~~~g~gVE~~f~l   75 (113)
T PF01245_consen    7 VEREQIKKDIPEFRVGDTVRVTYKISEGNKERIQVFEGVVIARRRRGLNSSFTLRNISQGVGVERVFPL   75 (113)
T ss_dssp             HHHTTCSSSSSSSSSSSEEEEEEEEESSSSEEEEEEEEEEEEEEBSSTSSEEEEEEEETTEEEEEEEET
T ss_pred             HHHHHhhcCCCCcCCCCEEEEEEEEecCCCceeEEEEEEEEEEECCCCCeeEEEEEEecCccEEEEEEc
Confidence            334444789999999999999999999 89999999999999999999999999999999999999997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>KOG1698 consensus Mitochondrial/chloroplast ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=1.1e-21  Score=176.01  Aligned_cols=114  Identities=44%  Similarity=0.724  Sum_probs=96.7

Q ss_pred             ceeecccCcccccCCCCCCCCCCCCcccccccchHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEecCCCccc
Q 021720          193 RCISTSESSVESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRV  272 (308)
Q Consensus       193 R~~sTt~~~v~~s~~~stap~pp~ppriK~K~l~Kra~nLM~iLEKeemEe~r~KrdIPeFkpGDTVrV~~kI~EnKeRi  272 (308)
                      |+++++..+ + ...+.--+..++....++...++.+.++|++||+++|++.+..+++|+|++||+|+|++.++++|.|+
T Consensus        39 ~~~a~~~~~-~-~~~~~~~~~~~~~~~~~f~~~~~~~~~~~e~Ldr~a~~~rr~~r~iPe~~~G~Iv~V~s~~p~~k~k~  116 (201)
T KOG1698|consen   39 RCFAPTKRP-S-VNEPSPESPCVVEQYPEFLPLRKVAKRIMEILDRQAVLERRKVRDIPEFKVGSIVRVTSEDPENKRKV  116 (201)
T ss_pred             ccccCCCCc-c-cccCCCCCccccccCcccccchhHHHHHHHhhCHHHHHHHHhcccCCccccccEEEEEecCCccCCce
Confidence            777777765 2 22222111112334556678889999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          273 STLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       273 Q~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      ..|.||||+|+|+|+++||+|||+++|+|||-+|||
T Consensus       117 s~f~Gi~I~R~~~Gl~atf~LRnvIagvGVEi~~pL  152 (201)
T KOG1698|consen  117 SRFKGICIRRRNAGLNATFLLRNVIAGVGVEIVFPL  152 (201)
T ss_pred             eEEEEEEEEecccCCcceEEeeehhhCceeEEEEec
Confidence            999999999999999999999999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	308
3bbo_R	233	Homology Model For The Spinach Chloroplast 50s Subu		1e-19
2j01_T	146	Structure Of The Thermus Thermophilus 70s Ribosome		7e-07
1vsa_N	146	Crystal Structure Of A 70s Ribosome-Trna Complex Re		7e-07
3tve_R	137	Crystal Structure Analysis Of Ribosomal Decoding. T		8e-07
3fin_T	138	T. Thermophilus 70s Ribosome In Complex With Mrna,		8e-07
3pyo_P	137	Crystal Structure Of A Complex Containing Domain 3		1e-06
1vs6_P	115	Crystal Structure Of The Bacterial Ribosome From Es		1e-06
1p85_N	114	Real Space Refined Coordinates Of The 50s Subunit F		1e-06
1nkw_N	166	Crystal Structure Of The Large Ribosomal Subunit Fr		6e-05
1pnu_N	125	Crystal Structure Of A Streptomycin Dependent Ribos		8e-05

>pdb|3BBO|R Chain R, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 233

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 61/77 (79%)
Query: 232 IMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTF 291
           IM IL+K+AV   +  R +P I+ G IVQ+++ +PENKRR+S  KGIVI+R+NAGI TT 
Sbjct: 122 IMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTI 181
Query: 292 RLRRLVAGVGVESLFPL 308
           R+RR++AGVGVE +FPL
Sbjct: 182 RIRRIIAGVGVEIVFPL 198

>pdb|2J01|T Chain T, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 146

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 249 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFP 307
           ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++  GVGVE +FP
Sbjct: 18  DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFP 77
Query: 308 L 308
           L
Sbjct: 78  L 78

>pdb|1VSA|N Chain N, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 146

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 249 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFP 307
           ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++  GVGVE +FP
Sbjct: 18  DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFP 77
Query: 308 L 308
           L
Sbjct: 78  L 78

>pdb|3TVE|R Chain R, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 137

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 241 VENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
           VE+   + ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++  G
Sbjct: 10  VESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYG 69
Query: 300 VGVESLFPL 308
           VGVE +FPL
Sbjct: 70  VGVERIFPL 78

>pdb|3FIN|T Chain T, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 138

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 241 VENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
           VE+   + ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++  G
Sbjct: 10  VESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYG 69
Query: 300 VGVESLFPL 308
           VGVE +FPL
Sbjct: 70  VGVERIFPL 78

>pdb|3PYO|P Chain P, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 137

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 249 EIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFP 307
           ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++  GVGVE +FP
Sbjct: 18  DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFP 77
Query: 308 L 308
           L
Sbjct: 78  L 78

>pdb|1VS6|P Chain P, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 115

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 241 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
           +E  + ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G
Sbjct: 8   LEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNG 67
Query: 300 VGVESLF 306
            GVE +F
Sbjct: 68  EGVERVF 74

>pdb|1P85|N Chain N, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 114

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 241 VENVKSQREIPDIKPGYIVQLKV-VIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAG 299
           +E  + ++++P  +PG  V++KV V+  +K+R+   +G+VIA RN G+ + F +R++  G
Sbjct: 7   LEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNG 66
Query: 300 VGVESLF 306
            GVE +F
Sbjct: 67  EGVERVF 73

>pdb|1NKW|N Chain N, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 166

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 248 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLF 306
           R++PD +PG  V++   + E N+ R    +G+VIA   +G   +F +R++  G GVE +F
Sbjct: 22  RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVF 81
Query: 307 PL 308
           P 
Sbjct: 82  PF 83

>pdb|1PNU|N Chain N, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 125

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 248 REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLF 306
           R++PD +PG  V++   + E N+ R    +G+VIA   +G   +F +R++  G GVE +F
Sbjct: 21  RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVF 80
Query: 307 PL 308
           P 
Sbjct: 81  PF 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	9e-28
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	2e-18
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	8e-15
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	2e-14
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	2e-14

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 233

 Score =  106 bits (266), Expect = 9e-28
 Identities = 51/113 (45%), Positives = 73/113 (64%), Gaps = 4/113 (3%)

Query: 196 STSESSVESASYPPAAASSDLAPRIKFKRLDKTARHIMQILDKEAVENVKSQREIPDIKP 255
           S +  + E       A + +  PR +  +L      IM IL+K+AV   +  R +P I+ 
Sbjct: 90  SVAVVAEEELPVESEAEAEERPPRQQRVKLG----DIMGILNKKAVHAAEELRPVPGIRT 145

Query: 256 GYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           G IVQ+++ +PENKRR+S  KGIVI+R+NAGI TT R+RR++AGVGVE +FPL
Sbjct: 146 GDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPL 198

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 98

 Score = 77.6 bits (192), Expect = 2e-18
 Identities = 21/59 (35%), Positives = 30/59 (50%)

Query: 250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL 308
           IP+   G I+++    P    ++S   GI I R   G+  TF LR ++ G GVE  F L
Sbjct: 1   IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL 59

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ... Length = 146

 Score = 69.3 bits (170), Expect = 8e-15
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
           + VE+   + ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++ 
Sbjct: 8   KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVS 67

Query: 298 AGVGVESLFPL 308
            GVGVE +FPL
Sbjct: 68  YGVGVERIFPL 78

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Length = 114

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
           + +E  + ++++P  +PG  V++KV + E +K+R+   +G+VIA RN G+ + F +R++ 
Sbjct: 5   KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 64

Query: 298 AGVGVESLFPL 308
            G GVE +F  
Sbjct: 65  NGEGVERVFQT 75

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Length = 166

 Score = 69.1 bits (169), Expect = 2e-14
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 233 MQILDKEAVENVKSQ------REIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNA 285
           MQ   K     +         R++PD +PG  V++   + E N+ R    +G+VIA   +
Sbjct: 1   MQTHIKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGS 60

Query: 286 GISTTFRLRRLVAGVGVESLFPL 308
           G   +F +R++  G GVE +FP 
Sbjct: 61  GSRKSFTVRKISFGEGVERVFPF 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	99.94
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	99.93
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	99.93
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	99.91
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	99.91

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=99.94  E-value=5.3e-27  Score=193.54  Aligned_cols=73  Identities=36%  Similarity=0.750  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          231 HIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       231 nLM~iLEKeemEe~r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      ++|+.||++++     ++++|+|+|||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         2 ~~i~~~e~~~~-----~~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl   75 (114)
T 3r8s_P            2 NIIKQLEQEQM-----KQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQT   75 (114)
T ss_dssp             CHHHHHHGGGC-----CSCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             hHHHHHHHHHh-----ccCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEec
Confidence            35565555433     689999999999999999999 89999999999999999999999999999999999999997

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q

Probab=99.93  E-value=1.9e-27  Score=206.62  Aligned_cols=78  Identities=31%  Similarity=0.563  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          230 RHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       230 ~nLM~iLEKeemEe~r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      +++|+.|+++++.++ .++++|+|+|||||+|+++|.| +|+|+|.|+||||+++|+|+++||||||+++|+||||+|||
T Consensus         5 M~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fpl   83 (166)
T 2zjr_M            5 IKINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF   83 (166)
T ss_dssp             CCCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             HHHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEec
Confidence            467888888877654 4689999999999999999999 89999999999999999999999999999999999999997

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=99.93  E-value=4.1e-26  Score=195.05  Aligned_cols=64  Identities=39%  Similarity=0.774  Sum_probs=61.8

Q ss_pred             hcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          245 KSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       245 r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      +.++++|+|+|||||+|+++|.| +|+|+|.|+||||+++|+|+++||||||+++|+||||+|||
T Consensus        14 ~~~~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fpl   78 (146)
T 3v2d_T           14 YVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL   78 (146)
T ss_dssp             TCCCCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             HhhccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEec
Confidence            44789999999999999999999 89999999999999999999999999999999999999997

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=99.91  E-value=7.6e-28  Score=217.71  Aligned_cols=80  Identities=56%  Similarity=0.917  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEecCCCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          229 ARHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       229 a~nLM~iLEKeemEe~r~KrdIPeFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      +.++|+.|+++++++.+.++++|+|++||||+|+++|.|+|+|+|.|+||||+++|+|+++|||||||++|+||||+|||
T Consensus       119 ~~~iM~~L~re~ie~~q~kkdiPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpL  198 (233)
T 3bbo_R          119 LGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPL  198 (233)
T ss_dssp             --CCSSSCSTTHHHHTTCCSCCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCccCCCCEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEec
Confidence            34889999999999999899999999999999999999999999999999999999999999999999999999999997

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=99.91  E-value=1.2e-24  Score=175.51  Aligned_cols=59  Identities=36%  Similarity=0.617  Sum_probs=58.1

Q ss_pred             CCCCCCCCEEEEEEEecCCCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          250 IPDIKPGYIVQLKVVIPENKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       250 IPeFkpGDTVrV~~kI~EnKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      +|+|+|||||+|+++|.++|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl   59 (98)
T 2ftc_K            1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFEL   59 (98)
T ss_pred             CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEec
Confidence            69999999999999999999999999999999999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d2gycn1	114	b.34.5.6 (N:1-114) Ribosomal protein L19 {Escheric	1e-15
d2zjrm1	108	b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococ	9e-12
d2j01t1	138	b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus	2e-11

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Length = 114

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

 Score = 69.8 bits (171), Expect = 1e-15
 Identities = 24/71 (33%), Positives = 46/71 (64%), Gaps = 1/71 (1%)

Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
           + +E  + ++++P  +PG  V++KV + E +K+R+   +G+VIA RN G+ + F +R++ 
Sbjct: 5   KQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKIS 64

Query: 298 AGVGVESLFPL 308
            G GVE +F  
Sbjct: 65  NGEGVERVFQT 75

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Length = 108

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 58.6 bits (142), Expect = 9e-12
 Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)

Query: 233 MQILDKEAVENVKSQ--REIPDIKPGYIVQLKVVIPENKR-RVSTLKGIVIARRNAGIST 289
           ++I   E +  ++    R++PD +PG  V++   + E  R R    +G+VIA   +G   
Sbjct: 4   IKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRK 63

Query: 290 TFRLRRLVAGVGVESLFPL 308
           +F +R++  G GVE +FP 
Sbjct: 64  SFTVRKISFGEGVERVFPF 82

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Length = 138

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 239 EAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLV 297
           + VE+   + ++P+ +PG  V++   + E N+ R+   +GIVI  R  G +TTF +R++ 
Sbjct: 8   KLVESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVS 67

Query: 298 AGVGVESLFPL 308
            GVGVE +FPL
Sbjct: 68  YGVGVERIFPL 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d2zjrm1	108	Ribosomal protein L19 {Deinococcus radiodurans [Ta	99.92
d2j01t1	138	Ribosomal protein L19 {Thermus thermophilus [TaxId	99.9
d2gycn1	114	Ribosomal protein L19 {Escherichia coli [TaxId: 56	99.89

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.92  E-value=6.3e-27  Score=189.46  Aligned_cols=73  Identities=30%  Similarity=0.695  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          230 RHIMQILDKEAVENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       230 ~nLM~iLEKeemEe~r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      +++|+.+|++     +. +++|+|+|||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus         9 ~~li~~ie~~-----~~-k~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~fpl   82 (108)
T d2zjrm1           9 GELLRGIEQD-----HT-RQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPF   82 (108)
T ss_dssp             HHHHHHTTGG-----GC-CCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEET
T ss_pred             HHHHHHHHHH-----hC-cCCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEEeCCCccceEEEEEEecCccEEEEEEc
Confidence            3555555542     32 48999999999999999999 89999999999999999999999999999999999999997

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=4.2e-25  Score=185.17  Aligned_cols=68  Identities=40%  Similarity=0.758  Sum_probs=63.8

Q ss_pred             HHHhhcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          241 VENVKSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       241 mEe~r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      +|+.+.+.++|+|++||||+|+++|.| +|+|+|.|+|+||+++|+|+++||||||+++|+||||+|||
T Consensus        10 iE~~~~k~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~fpl   78 (138)
T d2j01t1          10 VESRYVRTDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFPL   78 (138)
T ss_dssp             HHCCCCCSCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEEECS
T ss_pred             HHHHhhcccCCCcCCCCEEEEEEEEcCCCceEEEEEEEEEEEEeCCCcceEEEEEEEecCccEEEEEec
Confidence            344455789999999999999999999 89999999999999999999999999999999999999997

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.8e-26  Score=188.20  Aligned_cols=64  Identities=36%  Similarity=0.749  Sum_probs=61.7

Q ss_pred             hcCCCCCCCCCCCEEEEEEEecC-CCcccceEEEEEEEEecCCCcceEEEEeccCCeeeEEEeeC
Q 021720          245 KSQREIPDIKPGYIVQLKVVIPE-NKRRVSTLKGIVIARRNAGISTTFRLRRLVAGVGVESLFPL  308 (308)
Q Consensus       245 r~KrdIPeFkpGDTVrV~~kI~E-nKeRiQ~FeGVVIARRNrGLnSTFTLRKIs~GVGVERiFPL  308 (308)
                      +.++++|+|+|||||+|+++|.| +|+|+|.|+||||+++|+|+++|||||||++|+||||+|||
T Consensus        11 q~k~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~fpl   75 (114)
T d2gycn1          11 QMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQT   75 (114)
T ss_dssp             TTCCCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCCCC
T ss_pred             HhhccCCCcCCCCEEEEEEEEccCCcceeeEEEEEEEEEeCCCcceEEEEEEecCCccEEEEEEe
Confidence            44679999999999999999999 89999999999999999999999999999999999999997